Citrus Sinensis ID: 035832
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
|---|
|
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 245 | 2.2.26 [Sep-21-2011] | |||||||
| Q8LEF6 | 278 | ABC transporter I family | yes | no | 0.987 | 0.870 | 0.789 | 1e-100 | |
| A3DJK5 | 281 | Energy-coupling factor tr | yes | no | 0.791 | 0.690 | 0.384 | 1e-30 | |
| Q97EK9 | 286 | Energy-coupling factor tr | yes | no | 0.848 | 0.727 | 0.372 | 7e-30 | |
| A0PXX8 | 288 | Energy-coupling factor tr | yes | no | 0.906 | 0.770 | 0.360 | 2e-29 | |
| Q8DWR4 | 280 | Energy-coupling factor tr | N/A | no | 0.873 | 0.764 | 0.367 | 2e-29 | |
| Q8E2L3 | 280 | Energy-coupling factor tr | N/A | no | 0.873 | 0.764 | 0.367 | 2e-29 | |
| Q3JYF5 | 280 | Energy-coupling factor tr | N/A | no | 0.873 | 0.764 | 0.367 | 2e-29 | |
| Q1WSB9 | 289 | Energy-coupling factor tr | yes | no | 0.828 | 0.702 | 0.379 | 6e-29 | |
| Q0TMS8 | 285 | Energy-coupling factor tr | yes | no | 0.832 | 0.715 | 0.363 | 3e-28 | |
| Q8XHV3 | 285 | Energy-coupling factor tr | yes | no | 0.832 | 0.715 | 0.363 | 3e-28 |
| >sp|Q8LEF6|AB11I_ARATH ABC transporter I family member 11, chloroplastic OS=Arabidopsis thaliana GN=ABCI11 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 364 bits (935), Expect = e-100, Method: Compositional matrix adjust.
Identities = 191/242 (78%), Positives = 211/242 (87%)
Query: 4 RKKRAGGISCDYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQ 63
R K+ ISCDYSC+EVRDV YRPPGTQ++ILNGV+FSL EKSFGLIFG+SGSGKTTLLQ
Sbjct: 37 RTKKPRVISCDYSCIEVRDVCYRPPGTQLNILNGVNFSLREKSFGLIFGKSGSGKTTLLQ 96
Query: 64 LLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGW 123
LLAGL+KPTSGSI I+GY +DG+P P+ LP EKVGIVFQFPER+FVADNVLDE+ FGW
Sbjct: 97 LLAGLNKPTSGSICIQGYGDDGQPKADPDLLPTEKVGIVFQFPERFFVADNVLDEITFGW 156
Query: 124 PRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLI 183
PRQ GS+QLKE L NLQRA NWVGLD LDKDP LSGGYKRRLALAIQLVQ PDLLI
Sbjct: 157 PRQKGSLQLKEQLTSNLQRAFNWVGLDSIPLDKDPQLLSGGYKRRLALAIQLVQTPDLLI 216
Query: 184 LDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQRI 243
LDEPLAGLDWKARADV KLLKHLKKELT+LVVSHDL+E+AALVD SWRM+ GG LV +R
Sbjct: 217 LDEPLAGLDWKARADVAKLLKHLKKELTLLVVSHDLRELAALVDQSWRMETGGVLVAERP 276
Query: 244 PV 245
P+
Sbjct: 277 PL 278
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|A3DJK5|ECFA2_CLOTH Energy-coupling factor transporter ATP-binding protein EcfA 2 OS=Clostridium thermocellum (strain ATCC 27405 / DSM 1237) GN=ecfA2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 133 bits (335), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 78/203 (38%), Positives = 120/203 (59%), Gaps = 9/203 (4%)
Query: 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94
L+ ++ S+ F I G +GSGK+TL+Q GL KPTSGS+ I G G+ +
Sbjct: 23 LDNINLSIETGEFVGIIGHTGSGKSTLVQHFNGLLKPTSGSVYINGEELTGQRAKELK-- 80
Query: 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSL 154
++VGIVFQ+PE + V ++ FG R+ + K+ + +++ I VGL L
Sbjct: 81 --KQVGIVFQYPEHQLFEETVYKDIAFGLVRRG---EEKDEIYRKVRKTIRLVGLSEDIL 135
Query: 155 DKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTI 212
DK P LSGG KRR+A+A LV P +L+LDEP AGLD K R ++ +L+ +L K ++T+
Sbjct: 136 DKSPFELSGGQKRRVAMAGILVLEPSILVLDEPAAGLDPKGREEIFELVSNLHKNNKMTV 195
Query: 213 LVVSHDLKEMAALVDHSWRMDMG 235
++VSH ++++A V M+ G
Sbjct: 196 ILVSHSMEDVAKYVQRVIVMNQG 218
|
Part of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. Clostridium thermocellum (strain ATCC 27405 / DSM 1237) (taxid: 203119) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: - |
| >sp|Q97EK9|ECFA1_CLOAB Energy-coupling factor transporter ATP-binding protein EcfA 1 OS=Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) GN=ecfA1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 130 bits (328), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 83/223 (37%), Positives = 135/223 (60%), Gaps = 15/223 (6%)
Query: 18 LEVRDVSYR-PPGT--QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSG 74
+++ +++Y PGT + L+ V+ ++ + F + G +GSGK+TL+Q + GL KPTSG
Sbjct: 3 IKIENLTYTYMPGTPFEKKALDNVNITIEDGEFAVFIGHTGSGKSTLIQQINGLLKPTSG 62
Query: 75 SINIRGYNNDGEPNNSPEPLPP--EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQL 132
SI I +D + + L +KVG+VFQ+PE + + ++ FG PR G +
Sbjct: 63 SIFI----DDVDITDKSVKLNDIRKKVGLVFQYPEYQLFEETIEKDIAFG-PRNMGLSE- 116
Query: 133 KEYLALNLQRAINWVGLDGTSL-DKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGL 191
E ++ +++A+ VGL+ DK P LSGG KRR+A+A + P +LILDEP AGL
Sbjct: 117 -EEVSTRVKKAMKMVGLEYNDFKDKSPFELSGGQKRRVAIAGVVAMEPKVLILDEPTAGL 175
Query: 192 DWKARADVVKLLKHLKKE--LTILVVSHDLKEMAALVDHSWRM 232
D K R D++ +K L+KE +TI++VSH ++++A + D + M
Sbjct: 176 DPKGRDDILYEIKKLQKEYKMTIILVSHSMEDVAKVADKIFVM 218
|
Part of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. Clostridium acetobutylicum (strain ATCC 824 / DSM 792 / JCM 1419 / LMG 5710 / VKM B-1787) (taxid: 272562) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: - |
| >sp|A0PXX8|ECFA2_CLONN Energy-coupling factor transporter ATP-binding protein EcfA 2 OS=Clostridium novyi (strain NT) GN=ecfA2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 129 bits (324), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 84/233 (36%), Positives = 140/233 (60%), Gaps = 11/233 (4%)
Query: 17 CLEVRDVSY-RPPGTQVD--ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTS 73
+E++++++ PG+ + L+ V+ S+ + F + G +GSGK+TL+Q + GL K +S
Sbjct: 2 SIEIKNLTHIYMPGSPFERKALDNVNISIEDGEFVALIGHTGSGKSTLIQHINGLLKASS 61
Query: 74 GSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLK 133
G+I I G + E E +KVG+VFQ+PE + + ++ FG P+ G
Sbjct: 62 GNIIIDGVDITSEKVKLSEI--RKKVGLVFQYPEYQLFEETIEKDIAFG-PKNLGLND-- 116
Query: 134 EYLALNLQRAINWVGLD-GTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLD 192
E ++ +++A+N VGLD DK P LSGG KRR+A+A + P +LILDEP AGLD
Sbjct: 117 EQVSKRVKKAMNIVGLDYDVYKDKSPFDLSGGQKRRVAIAGVVAMEPKVLILDEPAAGLD 176
Query: 193 WKARADVVKLLKHLKKE--LTILVVSHDLKEMAALVDHSWRMDMGGFLVEQRI 243
K R D+++ +K LK+E +TI++VSH ++++A + + MD G +++ I
Sbjct: 177 PKGREDILEKVKQLKEEYNMTIILVSHSMEDVAKIAERVLVMDKGRCILDGTI 229
|
Part of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. Clostridium novyi (strain NT) (taxid: 386415) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: - |
| >sp|Q8DWR4|ECFA1_STRA5 Energy-coupling factor transporter ATP-binding protein EcfA 1 OS=Streptococcus agalactiae serotype V (strain ATCC BAA-611 / 2603 V/R) GN=ecfA1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 129 bits (324), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 82/223 (36%), Positives = 128/223 (57%), Gaps = 9/223 (4%)
Query: 18 LEVRDVSYR-PPGTQVD--ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSG 74
+E ++VSY GT + L V+ + + S+ G +GSGK+T++QLL GL PT G
Sbjct: 3 IEFKNVSYTYQAGTPFEGRALFDVNLKIEDASYTAFIGHTGSGKSTIMQLLNGLHIPTKG 62
Query: 75 SINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLK- 133
+ + ++ N +KVG+VFQFPE + VL +V FG P+ G Q++
Sbjct: 63 EVIVDDFSIKAGDKNKEIKFIRQKVGLVFQFPESQLFEETVLKDVAFG-PQNFGISQIEA 121
Query: 134 EYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDW 193
E LA + + VG+ DK+P LSGG RR+A+A L P +L+LDEP AGLD
Sbjct: 122 ERLA---EEKLRLVGISEDLFDKNPFELSGGQMRRVAIAGILAMEPKVLVLDEPTAGLDP 178
Query: 194 KARADVVKLLKHL-KKELTILVVSHDLKEMAALVDHSWRMDMG 235
K R +++ L K+L KK +TI++V+H + ++A D+ + ++ G
Sbjct: 179 KGRKELMTLFKNLHKKGMTIVLVTHLMDDVADYADYVYVLEAG 221
|
Part of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. Streptococcus agalactiae serotype V (taxid: 216466) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: - |
| >sp|Q8E2L3|ECFA1_STRA3 Energy-coupling factor transporter ATP-binding protein EcfA 1 OS=Streptococcus agalactiae serotype III (strain NEM316) GN=ecfA1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 129 bits (324), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 82/223 (36%), Positives = 128/223 (57%), Gaps = 9/223 (4%)
Query: 18 LEVRDVSYR-PPGTQVD--ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSG 74
+E ++VSY GT + L V+ + + S+ G +GSGK+T++QLL GL PT G
Sbjct: 3 IEFKNVSYTYQAGTPFEGRALFDVNLKIEDASYTAFIGHTGSGKSTIMQLLNGLHIPTKG 62
Query: 75 SINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLK- 133
+ + ++ N +KVG+VFQFPE + VL +V FG P+ G Q++
Sbjct: 63 EVIVDDFSIKAGDKNKEIKFIRQKVGLVFQFPESQLFEETVLKDVAFG-PQNFGISQIEA 121
Query: 134 EYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDW 193
E LA + + VG+ DK+P LSGG RR+A+A L P +L+LDEP AGLD
Sbjct: 122 ERLA---EEKLRLVGISEDLFDKNPFELSGGQMRRVAIAGILAMEPKVLVLDEPTAGLDP 178
Query: 194 KARADVVKLLKHL-KKELTILVVSHDLKEMAALVDHSWRMDMG 235
K R +++ L K+L KK +TI++V+H + ++A D+ + ++ G
Sbjct: 179 KGRKELMTLFKNLHKKGMTIVLVTHLMDDVADYADYVYVLEAG 221
|
Part of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. Streptococcus agalactiae serotype III (taxid: 216495) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: - |
| >sp|Q3JYF5|ECFA1_STRA1 Energy-coupling factor transporter ATP-binding protein EcfA 1 OS=Streptococcus agalactiae serotype Ia (strain ATCC 27591 / A909 / CDC SS700) GN=ecfA1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 129 bits (324), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 82/223 (36%), Positives = 128/223 (57%), Gaps = 9/223 (4%)
Query: 18 LEVRDVSYR-PPGTQVD--ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSG 74
+E ++VSY GT + L V+ + + S+ G +GSGK+T++QLL GL PT G
Sbjct: 3 IEFKNVSYTYQAGTPFEGRALFDVNLKIEDASYTAFIGHTGSGKSTIMQLLNGLHIPTKG 62
Query: 75 SINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLK- 133
+ + ++ N +KVG+VFQFPE + VL +V FG P+ G Q++
Sbjct: 63 EVIVDDFSIKAGDKNKEIKFIRQKVGLVFQFPESQLFEETVLKDVAFG-PQNFGISQIEA 121
Query: 134 EYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDW 193
E LA + + VG+ DK+P LSGG RR+A+A L P +L+LDEP AGLD
Sbjct: 122 ERLA---EEKLRLVGISEDLFDKNPFELSGGQMRRVAIAGILAMEPKVLVLDEPTAGLDP 178
Query: 194 KARADVVKLLKHL-KKELTILVVSHDLKEMAALVDHSWRMDMG 235
K R +++ L K+L KK +TI++V+H + ++A D+ + ++ G
Sbjct: 179 KGRKELMTLFKNLHKKGMTIVLVTHLMDDVADYADYVYVLEAG 221
|
Part of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. Streptococcus agalactiae serotype Ia (taxid: 355315) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: - |
| >sp|Q1WSB9|ECFA1_LACS1 Energy-coupling factor transporter ATP-binding protein EcfA 1 OS=Lactobacillus salivarius (strain UCC118) GN=ecfA1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 127 bits (319), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 79/208 (37%), Positives = 117/208 (56%), Gaps = 5/208 (2%)
Query: 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94
L VS ++ + S+ I G +GSGK+TLLQ L GL KPTSG I+I GY D N
Sbjct: 23 LKDVSINIKDGSYTAIVGHTGSGKSTLLQHLNGLLKPTSGEISINGYTIDNTTKNKELGK 82
Query: 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSL 154
++VG VFQFPE + VL ++ F P+ G + E + ++A V L L
Sbjct: 83 LRKEVGFVFQFPEAQLFEETVLKDIAFA-PKNFGKSE-DEAEKIAREKA-KLVALPEEVL 139
Query: 155 DKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKE--LTI 212
+K P LSGG RR+A+A L P +L+LDEP AGLD + R ++++ L K+ LTI
Sbjct: 140 EKSPFELSGGQMRRVAIAGILAMEPKVLVLDEPTAGLDPEGRHQMMEMFNRLHKDENLTI 199
Query: 213 LVVSHDLKEMAALVDHSWRMDMGGFLVE 240
++V+H + ++A DH ++ G + +
Sbjct: 200 ILVTHQMNDVAEYADHVIVLESGKVIAD 227
|
Part of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. Lactobacillus salivarius (strain UCC118) (taxid: 362948) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: - |
| >sp|Q0TMS8|ECFA2_CLOP1 Energy-coupling factor transporter ATP-binding protein EcfA 2 OS=Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) GN=ecfA2 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 125 bits (314), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 77/212 (36%), Positives = 126/212 (59%), Gaps = 8/212 (3%)
Query: 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94
LN ++ + + F + G +GSGK+T +Q L GL PTSG+I + G N + +
Sbjct: 23 LNNINCEIEDGEFVALIGHTGSGKSTFIQHLNGLLSPTSGNIIVDGVNIADKKVKLSDI- 81
Query: 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLD-GTS 153
+KVG+VFQ+PE + + ++ +G PR G + E ++ +++++ VGLD T
Sbjct: 82 -RKKVGLVFQYPEYQLFEETIEKDIEYG-PRNLGISE--EEISKRVKKSMEMVGLDYETY 137
Query: 154 LDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKE--LT 211
DK P LSGG KRR+A+A + P +LILDEP AGLD K R D++ ++ L KE +T
Sbjct: 138 KDKSPFDLSGGQKRRVAIAGVIAMEPKVLILDEPTAGLDPKGREDILAQIRLLHKEYGMT 197
Query: 212 ILVVSHDLKEMAALVDHSWRMDMGGFLVEQRI 243
I++VSH ++++A + D M+ G +++ +I
Sbjct: 198 IIMVSHSMEDVAKIADRVIVMNSGEIVLDGKI 229
|
Part of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. Clostridium perfringens (strain ATCC 13124 / NCTC 8237 / Type A) (taxid: 195103) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: - |
| >sp|Q8XHV3|ECFA1_CLOPE Energy-coupling factor transporter ATP-binding protein EcfA 1 OS=Clostridium perfringens (strain 13 / Type A) GN=ecfA1 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 125 bits (314), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 77/212 (36%), Positives = 126/212 (59%), Gaps = 8/212 (3%)
Query: 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94
LN ++ + + F + G +GSGK+T +Q L GL PTSG+I + G N + +
Sbjct: 23 LNNINCEIEDGEFVALIGHTGSGKSTFIQHLNGLLSPTSGNIIVDGVNIADKKVKLSDI- 81
Query: 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLD-GTS 153
+KVG+VFQ+PE + + ++ +G PR G + E ++ +++++ VGLD T
Sbjct: 82 -RKKVGLVFQYPEYQLFEETIEKDIEYG-PRNLGISE--EEISKRVKKSMEMVGLDYETY 137
Query: 154 LDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKE--LT 211
DK P LSGG KRR+A+A + P +LILDEP AGLD K R D++ ++ L KE +T
Sbjct: 138 KDKSPFDLSGGQKRRVAIAGVIAMEPKVLILDEPTAGLDPKGREDILAQIRLLHKEYGMT 197
Query: 212 ILVVSHDLKEMAALVDHSWRMDMGGFLVEQRI 243
I++VSH ++++A + D M+ G +++ +I
Sbjct: 198 IIMVSHSMEDVAKIADRVIVMNSGEIVLDGKI 229
|
Part of a common energy-coupling factor (ECF) ABC-transporter complex. Unlike classic ABC transporters this ECF transporter provides the energy necessary to transport a number of different substrates. Clostridium perfringens (strain 13 / Type A) (taxid: 195102) EC: 3 EC: . EC: 6 EC: . EC: 3 EC: . EC: - |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 245 | ||||||
| 225451493 | 284 | PREDICTED: ABC transporter I family memb | 0.951 | 0.820 | 0.811 | 1e-106 | |
| 255543695 | 238 | metal abc transporter, putative [Ricinus | 0.930 | 0.957 | 0.824 | 1e-100 | |
| 224129064 | 234 | predicted protein [Populus trichocarpa] | 0.938 | 0.982 | 0.808 | 9e-99 | |
| 15241308 | 278 | ABC transporter I family member 11 [Arab | 0.987 | 0.870 | 0.789 | 2e-98 | |
| 357503753 | 280 | ABC transporter I family member [Medicag | 0.951 | 0.832 | 0.793 | 1e-97 | |
| 297811527 | 278 | non-intrinsic abc protein 14 [Arabidopsi | 0.987 | 0.870 | 0.780 | 2e-97 | |
| 356571563 | 272 | PREDICTED: ABC transporter I family memb | 0.959 | 0.863 | 0.791 | 7e-97 | |
| 449441710 | 274 | PREDICTED: ABC transporter I family memb | 0.995 | 0.890 | 0.741 | 5e-96 | |
| 9757791 | 270 | unnamed protein product [Arabidopsis tha | 0.955 | 0.866 | 0.760 | 1e-91 | |
| 449532119 | 246 | PREDICTED: ABC transporter I family memb | 0.881 | 0.878 | 0.754 | 2e-84 |
| >gi|225451493|ref|XP_002274500.1| PREDICTED: ABC transporter I family member 11, chloroplastic [Vitis vinifera] gi|296082322|emb|CBI21327.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 390 bits (1001), Expect = e-106, Method: Compositional matrix adjust.
Identities = 189/233 (81%), Positives = 212/233 (90%)
Query: 11 ISCDYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK 70
ISC+YSC+EVR VSYRP GT+ D+LN V+FSLPEKSFGLIFGRSGSGKTTLLQLLAG++K
Sbjct: 50 ISCEYSCIEVRGVSYRPQGTEFDLLNDVNFSLPEKSFGLIFGRSGSGKTTLLQLLAGINK 109
Query: 71 PTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSI 130
PTSGSI ++ Y +DG+ + EPLP E+VGI+FQFPERYFVADNVL+EV FGWPRQ GS
Sbjct: 110 PTSGSIFVQKYGDDGKLTQTSEPLPSERVGILFQFPERYFVADNVLEEVTFGWPRQRGSF 169
Query: 131 QLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAG 190
QLKE+LAL L+RAINWVGL+G SLDKDPHSLSGGYKRRLALAIQLVQ+PDLLILDEPLAG
Sbjct: 170 QLKEHLALGLERAINWVGLNGISLDKDPHSLSGGYKRRLALAIQLVQIPDLLILDEPLAG 229
Query: 191 LDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQRI 243
LDWKARADVV+LLKHLKKELTILVVSHDLKE+AALVD SWRM+MGG L E+ I
Sbjct: 230 LDWKARADVVELLKHLKKELTILVVSHDLKELAALVDRSWRMEMGGVLKEEPI 282
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255543695|ref|XP_002512910.1| metal abc transporter, putative [Ricinus communis] gi|223547921|gb|EEF49413.1| metal abc transporter, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 370 bits (950), Expect = e-100, Method: Compositional matrix adjust.
Identities = 188/228 (82%), Positives = 211/228 (92%)
Query: 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSI 76
L ++DVSYRPPGTQ+++LNGVSFSLPEKSFGLIFG+SGSGKTTLLQLLAGLS+PTSGSI
Sbjct: 10 TLALKDVSYRPPGTQLNLLNGVSFSLPEKSFGLIFGQSGSGKTTLLQLLAGLSEPTSGSI 69
Query: 77 NIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYL 136
I+ Y NDG P SP+PL E+VGIVFQFPERYFVAD +LDEVIFGWPRQ GS+QLKE+L
Sbjct: 70 CIQKYGNDGNPCQSPKPLSHERVGIVFQFPERYFVADTILDEVIFGWPRQKGSLQLKEHL 129
Query: 137 ALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKAR 196
ALNLQ+AI WVGL+G SL KDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDW+AR
Sbjct: 130 ALNLQKAITWVGLNGISLGKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWRAR 189
Query: 197 ADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQRIP 244
ADVVKLLK LKKELT+L+VSHDLKE+AALVDHSWRM+MGGFL E+++P
Sbjct: 190 ADVVKLLKQLKKELTVLIVSHDLKELAALVDHSWRMEMGGFLKEEQLP 237
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224129064|ref|XP_002328881.1| predicted protein [Populus trichocarpa] gi|222839311|gb|EEE77648.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 365 bits (937), Expect = 9e-99, Method: Compositional matrix adjust.
Identities = 186/230 (80%), Positives = 210/230 (91%)
Query: 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGS 75
S V+DVSYRPPGT++++LN V+FSLPE+SFGLIFG+SGSGKTTLLQLL+G+SKPTSGS
Sbjct: 5 SLSTVKDVSYRPPGTELNLLNKVTFSLPERSFGLIFGQSGSGKTTLLQLLSGISKPTSGS 64
Query: 76 INIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEY 135
I ++ Y NDG PN PE L PEKVGIVFQFPERYFVAD + DEV FGWPR+ S+QL+E+
Sbjct: 65 ICVQRYGNDGNPNQLPEQLSPEKVGIVFQFPERYFVADTIADEVTFGWPRRKSSVQLREH 124
Query: 136 LALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKA 195
LALNLQRA+NWVGL+G SLDKDPHSLSGGYKRRLALAIQLV+VPDLLILDEPLAGLDWKA
Sbjct: 125 LALNLQRAVNWVGLNGISLDKDPHSLSGGYKRRLALAIQLVEVPDLLILDEPLAGLDWKA 184
Query: 196 RADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQRIPV 245
RADVVKLLKHLKKELTILVVSHDLKE+AALVDHSWRM+MGGFL E+ +PV
Sbjct: 185 RADVVKLLKHLKKELTILVVSHDLKELAALVDHSWRMEMGGFLREELLPV 234
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15241308|ref|NP_196914.1| ABC transporter I family member 11 [Arabidopsis thaliana] gi|75330013|sp|Q8LEF6.1|AB11I_ARATH RecName: Full=ABC transporter I family member 11, chloroplastic; Short=ABC transporter ABCI.11; Short=AtABCI11; AltName: Full=Non-intrinsic ABC protein 14; Flags: Precursor gi|21553579|gb|AAM62672.1| contains similarity to ABC transporter, ATP-binding protein [Arabidopsis thaliana] gi|26452494|dbj|BAC43332.1| unknown protein [Arabidopsis thaliana] gi|29824157|gb|AAP04039.1| putative ABC transporter family protein [Arabidopsis thaliana] gi|332004604|gb|AED91987.1| ABC transporter I family member 11 [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 364 bits (935), Expect = 2e-98, Method: Compositional matrix adjust.
Identities = 191/242 (78%), Positives = 211/242 (87%)
Query: 4 RKKRAGGISCDYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQ 63
R K+ ISCDYSC+EVRDV YRPPGTQ++ILNGV+FSL EKSFGLIFG+SGSGKTTLLQ
Sbjct: 37 RTKKPRVISCDYSCIEVRDVCYRPPGTQLNILNGVNFSLREKSFGLIFGKSGSGKTTLLQ 96
Query: 64 LLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGW 123
LLAGL+KPTSGSI I+GY +DG+P P+ LP EKVGIVFQFPER+FVADNVLDE+ FGW
Sbjct: 97 LLAGLNKPTSGSICIQGYGDDGQPKADPDLLPTEKVGIVFQFPERFFVADNVLDEITFGW 156
Query: 124 PRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLI 183
PRQ GS+QLKE L NLQRA NWVGLD LDKDP LSGGYKRRLALAIQLVQ PDLLI
Sbjct: 157 PRQKGSLQLKEQLTSNLQRAFNWVGLDSIPLDKDPQLLSGGYKRRLALAIQLVQTPDLLI 216
Query: 184 LDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQRI 243
LDEPLAGLDWKARADV KLLKHLKKELT+LVVSHDL+E+AALVD SWRM+ GG LV +R
Sbjct: 217 LDEPLAGLDWKARADVAKLLKHLKKELTLLVVSHDLRELAALVDQSWRMETGGVLVAERP 276
Query: 244 PV 245
P+
Sbjct: 277 PL 278
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357503753|ref|XP_003622165.1| ABC transporter I family member [Medicago truncatula] gi|355497180|gb|AES78383.1| ABC transporter I family member [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 361 bits (927), Expect = 1e-97, Method: Compositional matrix adjust.
Identities = 185/233 (79%), Positives = 209/233 (89%)
Query: 13 CDYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPT 72
C YS LEVRDVSY+PPGT+ +LN V+FSLPEKS GLIFG+SGSGKTTLLQLLAG++KPT
Sbjct: 48 CSYSSLEVRDVSYQPPGTEFKLLNSVNFSLPEKSLGLIFGQSGSGKTTLLQLLAGINKPT 107
Query: 73 SGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQL 132
SGSI+I+ Y +DG P+ SPEPL PE+VGIVFQFPERYFVAD VLDEV FGWPRQ G+ QL
Sbjct: 108 SGSIHIQKYGDDGSPSQSPEPLVPERVGIVFQFPERYFVADTVLDEVTFGWPRQKGNDQL 167
Query: 133 KEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLD 192
+E LAL LQRAINWVGL G SLDK+PHSLSGGYKRRLALAIQLVQ+PDLLILDEPLAGLD
Sbjct: 168 RENLALGLQRAINWVGLSGISLDKNPHSLSGGYKRRLALAIQLVQIPDLLILDEPLAGLD 227
Query: 193 WKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQRIPV 245
WKARADVVKLLKHLKKELT+LVVSHDL+E A+LVD SWRM+MGG L ++ +P+
Sbjct: 228 WKARADVVKLLKHLKKELTVLVVSHDLREFASLVDQSWRMEMGGNLRQEFLPL 280
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297811527|ref|XP_002873647.1| non-intrinsic abc protein 14 [Arabidopsis lyrata subsp. lyrata] gi|297319484|gb|EFH49906.1| non-intrinsic abc protein 14 [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 360 bits (925), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 189/242 (78%), Positives = 210/242 (86%)
Query: 4 RKKRAGGISCDYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQ 63
RKK+ ISCDYSC+EVRDV YRPPGTQ++ILNGV+FSL E+SFGLIFG+SGSGKTTLLQ
Sbjct: 37 RKKKPRVISCDYSCIEVRDVCYRPPGTQLNILNGVNFSLRERSFGLIFGKSGSGKTTLLQ 96
Query: 64 LLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGW 123
LLAGL+KPTSGSI I+ Y +DG+P PE LP EKVGIVFQFPER+FVADNVLDE+ FGW
Sbjct: 97 LLAGLNKPTSGSICIQRYGDDGQPKAVPELLPTEKVGIVFQFPERFFVADNVLDEITFGW 156
Query: 124 PRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLI 183
PRQ GS+QLKE L NL RA NWVGLD LDKDP LSGGYKRRLALAIQLVQ PDLLI
Sbjct: 157 PRQKGSLQLKEQLTSNLHRAFNWVGLDSIPLDKDPQLLSGGYKRRLALAIQLVQTPDLLI 216
Query: 184 LDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQRI 243
LDEPLAGLDWKARADV KLLKHLKKELT+LVVSHDL+E+AALVD SWRM+ GG L+ +R
Sbjct: 217 LDEPLAGLDWKARADVAKLLKHLKKELTLLVVSHDLRELAALVDQSWRMETGGVLLAERP 276
Query: 244 PV 245
P+
Sbjct: 277 PL 278
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356571563|ref|XP_003553946.1| PREDICTED: ABC transporter I family member 11, chloroplastic-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 359 bits (921), Expect = 7e-97, Method: Compositional matrix adjust.
Identities = 186/235 (79%), Positives = 209/235 (88%)
Query: 11 ISCDYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK 70
I+ +YS EVRDV+Y+PPGTQ+ +LN VSFSLPEKSFGLIFG+SGSGKTTLLQLLAG+SK
Sbjct: 38 INSNYSSFEVRDVTYQPPGTQLRLLNSVSFSLPEKSFGLIFGQSGSGKTTLLQLLAGISK 97
Query: 71 PTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSI 130
PTSGSI I+ Y +DG P+ PEPL PE+VGIVFQFPERYFVADNVLDEV FGWPRQ G+
Sbjct: 98 PTSGSIYIQEYESDGNPSQPPEPLVPERVGIVFQFPERYFVADNVLDEVTFGWPRQKGNH 157
Query: 131 QLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAG 190
L+E LAL LQRAINWVGL G SL+K+PHSLSGGYKRRLALAIQLVQ PDLLILDEPLAG
Sbjct: 158 HLRENLALGLQRAINWVGLSGISLNKNPHSLSGGYKRRLALAIQLVQTPDLLILDEPLAG 217
Query: 191 LDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQRIPV 245
LDWKARADVVKLLKHLKKELT+LVVSHDL+E A+LVD SWRM+MGG L E+ +P+
Sbjct: 218 LDWKARADVVKLLKHLKKELTVLVVSHDLREFASLVDRSWRMEMGGNLREEFLPL 272
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449441710|ref|XP_004138625.1| PREDICTED: ABC transporter I family member 11, chloroplastic-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 356 bits (913), Expect = 5e-96, Method: Compositional matrix adjust.
Identities = 181/244 (74%), Positives = 209/244 (85%)
Query: 2 NLRKKRAGGISCDYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTL 61
N R+ A + +YSC EVRD+SYRPPGT+ +LN V+FSL EKSFGLIFG+SGSGKTTL
Sbjct: 31 NSRRTNALTLKSNYSCFEVRDLSYRPPGTEHSLLNAVNFSLREKSFGLIFGQSGSGKTTL 90
Query: 62 LQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIF 121
LQLLAGLSKPTSGSI ++ Y+ DG+P S +PL PE+VGIVFQFPERYF+ D+VL+EV F
Sbjct: 91 LQLLAGLSKPTSGSICVQKYDKDGKPCQSSQPLTPERVGIVFQFPERYFITDSVLNEVTF 150
Query: 122 GWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDL 181
GWPRQ LKE LAL LQRAINWVGL+G +LDKDPHSLSGGYKRRLALAIQLVQ+PDL
Sbjct: 151 GWPRQRSDSDLKENLALRLQRAINWVGLNGIALDKDPHSLSGGYKRRLALAIQLVQIPDL 210
Query: 182 LILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241
LILDEPLAGLDWKAR DVVKLLK+LKKELT+L+VSHDLKE A LVD+SWRM+MGG L E+
Sbjct: 211 LILDEPLAGLDWKARTDVVKLLKNLKKELTVLIVSHDLKEFAGLVDNSWRMEMGGVLREE 270
Query: 242 RIPV 245
+P+
Sbjct: 271 PLPI 274
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|9757791|dbj|BAB08289.1| unnamed protein product [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 341 bits (875), Expect = 1e-91, Method: Compositional matrix adjust.
Identities = 184/242 (76%), Positives = 204/242 (84%), Gaps = 8/242 (3%)
Query: 4 RKKRAGGISCDYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQ 63
R K+ ISCDYSC+EVRDV YRPPGTQ++ILNGV+FSL EKSFGLIFG+SGSGKTTLLQ
Sbjct: 37 RTKKPRVISCDYSCIEVRDVCYRPPGTQLNILNGVNFSLREKSFGLIFGKSGSGKTTLLQ 96
Query: 64 LLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGW 123
LLAGL+KPTSGSI I+GY +DG+P P+ LP EKVGIVFQFPER+FVADNVLDE+ FGW
Sbjct: 97 LLAGLNKPTSGSICIQGYGDDGQPKADPDLLPTEKVGIVFQFPERFFVADNVLDEITFGW 156
Query: 124 PRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLI 183
PRQ GS+QLKE L VGLD LDKDP LSGGYKRRLALAIQLVQ PDLLI
Sbjct: 157 PRQKGSLQLKEQL--------TSVGLDSIPLDKDPQLLSGGYKRRLALAIQLVQTPDLLI 208
Query: 184 LDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQRI 243
LDEPLAGLDWKARADV KLLKHLKKELT+LVVSHDL+E+AALVD SWRM+ GG LV +R
Sbjct: 209 LDEPLAGLDWKARADVAKLLKHLKKELTLLVVSHDLRELAALVDQSWRMETGGVLVAERP 268
Query: 244 PV 245
P+
Sbjct: 269 PL 270
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449532119|ref|XP_004173031.1| PREDICTED: ABC transporter I family member 11, chloroplastic-like, partial [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 317 bits (813), Expect = 2e-84, Method: Compositional matrix adjust.
Identities = 163/216 (75%), Positives = 186/216 (86%)
Query: 2 NLRKKRAGGISCDYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTL 61
N R+ A + +YSC EVRD+SYRPPGT+ +LN V+FSL EKSFGLIFG+SGSGKTTL
Sbjct: 31 NSRRTNALTLKSNYSCFEVRDLSYRPPGTEHSLLNAVNFSLREKSFGLIFGQSGSGKTTL 90
Query: 62 LQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIF 121
LQLLAGLSKPTSGSI ++ Y+ DG+P S +PL PE+VGIVFQFPERYF+ D+VL+EV F
Sbjct: 91 LQLLAGLSKPTSGSICVQKYDKDGKPCQSSQPLTPERVGIVFQFPERYFITDSVLNEVTF 150
Query: 122 GWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDL 181
GWPRQ LKE LAL LQRAINWVGL+G +LDKDPHSLSGGYKRRLALAIQLVQ+PDL
Sbjct: 151 GWPRQRSDSDLKENLALRLQRAINWVGLNGIALDKDPHSLSGGYKRRLALAIQLVQIPDL 210
Query: 182 LILDEPLAGLDWKARADVVKLLKHLKKELTILVVSH 217
LILDEPLAGLDWKAR DVVKLLK+LKKELT+L+VSH
Sbjct: 211 LILDEPLAGLDWKARTDVVKLLKNLKKELTVLIVSH 246
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 245 | ||||||
| TAIR|locus:2174653 | 278 | ABCI11 "ATP-binding cassette I | 0.987 | 0.870 | 0.727 | 1.1e-89 | |
| UNIPROTKB|Q3A9U7 | 279 | CHY_2278 "Cobalt ABC transport | 0.857 | 0.752 | 0.369 | 2.5e-26 | |
| TIGR_CMR|CHY_2278 | 279 | CHY_2278 "cobalt ABC transport | 0.857 | 0.752 | 0.369 | 2.5e-26 | |
| TIGR_CMR|BA_0139 | 280 | BA_0139 "ABC transporter, ATP- | 0.873 | 0.764 | 0.358 | 5.9e-25 | |
| UNIPROTKB|A2RI02 | 288 | ecfA2 "Energy-coupling factor | 0.791 | 0.673 | 0.34 | 1.1e-23 | |
| UNIPROTKB|D5AQY6 | 254 | nikO "Nickel import ATP-bindin | 0.861 | 0.830 | 0.354 | 2.3e-23 | |
| UNIPROTKB|Q81VQ1 | 293 | ecfA2 "Energy-coupling factor | 0.808 | 0.675 | 0.330 | 1e-22 | |
| TIGR_CMR|BA_0140 | 293 | BA_0140 "ABC transporter, ATP- | 0.808 | 0.675 | 0.330 | 1e-22 | |
| UNIPROTKB|Q71WH8 | 288 | ecfA1 "Energy-coupling factor | 0.808 | 0.687 | 0.339 | 3.9e-21 | |
| TIGR_CMR|CHY_1630 | 270 | CHY_1630 "cobalt ABC transport | 0.869 | 0.788 | 0.315 | 8e-21 |
| TAIR|locus:2174653 ABCI11 "ATP-binding cassette I11" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 895 (320.1 bits), Expect = 1.1e-89, P = 1.1e-89
Identities = 176/242 (72%), Positives = 194/242 (80%)
Query: 4 RKKRAGGISCDYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQ 63
R K+ ISCDYSC+EVRDV YRPPGTQ++ILNGV+FSL EKSFGLIFG+SGSGKTTLLQ
Sbjct: 37 RTKKPRVISCDYSCIEVRDVCYRPPGTQLNILNGVNFSLREKSFGLIFGKSGSGKTTLLQ 96
Query: 64 LLAGLSKPTSGSINIRGYNNDGXXXXXXXXXXXXKVGIVFQFPERYFVADNVLDEVIFGW 123
LLAGL+KPTSGSI I+GY +DG KVGIVFQFPER+FVADNVLDE+ FGW
Sbjct: 97 LLAGLNKPTSGSICIQGYGDDGQPKADPDLLPTEKVGIVFQFPERFFVADNVLDEITFGW 156
Query: 124 PRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLI 183
PRQ GS+QLKE L NLQRA NWVGLD LDKDP LSGGYKRRLALAIQLVQ PDLLI
Sbjct: 157 PRQKGSLQLKEQLTSNLQRAFNWVGLDSIPLDKDPQLLSGGYKRRLALAIQLVQTPDLLI 216
Query: 184 LDEPLAGLDWKARADVVXXXXXXXXXXTILVVSHDLKEMAALVDHSWRMDMGGFLVEQRI 243
LDEPLAGLDWKARADV T+LVVSHDL+E+AALVD SWRM+ GG LV +R
Sbjct: 217 LDEPLAGLDWKARADVAKLLKHLKKELTLLVVSHDLRELAALVDQSWRMETGGVLVAERP 276
Query: 244 PV 245
P+
Sbjct: 277 PL 278
|
|
| UNIPROTKB|Q3A9U7 CHY_2278 "Cobalt ABC transporter, ATP-binding protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 82/222 (36%), Positives = 117/222 (52%)
Query: 18 LEVRDVSY-RPPGTQVDI--LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSG 74
+ ++DV++ PGT +++ LN ++ + E I G +GSGK+TLL LL GL PT G
Sbjct: 3 ITLKDVTFVYNPGTPMEVIALNTINLNFNEGIITGIIGPTGSGKSTLLMLLNGLLTPTRG 62
Query: 75 SINIRGYNNDGXXXXXXXXXXXXKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKE 134
++ + G KV ++FQ+PE A+ V DE+ FG P+ G +L E
Sbjct: 63 NVVVDGLVTS---KKANLKTIRQKVQLIFQYPEHQLFAETVFDELTFG-PKNFGR-ELTE 117
Query: 135 YLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWK 194
A L R VGLD T L + P LSGG KRRLA+A L P LILDEP A LD
Sbjct: 118 GQAAELLRQ---VGLDETYLKRSPFELSGGEKRRLAIASVLGISPKYLILDEPAAALDPV 174
Query: 195 ARADVVXXXXXXXXXX-TILVVSHDLKEMAALVDHSWRMDMG 235
+ + T+++VSH+++E+A L D +D G
Sbjct: 175 GKETIYRLLLSLKKQGVTVIIVSHNMEEVAYLCDQILVLDRG 216
|
|
| TIGR_CMR|CHY_2278 CHY_2278 "cobalt ABC transporter, ATP-binding protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 297 (109.6 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 82/222 (36%), Positives = 117/222 (52%)
Query: 18 LEVRDVSY-RPPGTQVDI--LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSG 74
+ ++DV++ PGT +++ LN ++ + E I G +GSGK+TLL LL GL PT G
Sbjct: 3 ITLKDVTFVYNPGTPMEVIALNTINLNFNEGIITGIIGPTGSGKSTLLMLLNGLLTPTRG 62
Query: 75 SINIRGYNNDGXXXXXXXXXXXXKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKE 134
++ + G KV ++FQ+PE A+ V DE+ FG P+ G +L E
Sbjct: 63 NVVVDGLVTS---KKANLKTIRQKVQLIFQYPEHQLFAETVFDELTFG-PKNFGR-ELTE 117
Query: 135 YLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWK 194
A L R VGLD T L + P LSGG KRRLA+A L P LILDEP A LD
Sbjct: 118 GQAAELLRQ---VGLDETYLKRSPFELSGGEKRRLAIASVLGISPKYLILDEPAAALDPV 174
Query: 195 ARADVVXXXXXXXXXX-TILVVSHDLKEMAALVDHSWRMDMG 235
+ + T+++VSH+++E+A L D +D G
Sbjct: 175 GKETIYRLLLSLKKQGVTVIIVSHNMEEVAYLCDQILVLDRG 216
|
|
| TIGR_CMR|BA_0139 BA_0139 "ABC transporter, ATP-binding protein" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 284 (105.0 bits), Expect = 5.9e-25, P = 5.9e-25
Identities = 81/226 (35%), Positives = 120/226 (53%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
L ++S++ PG L VSFSL E + + G++GSGK+TL +LL GL P +G+I
Sbjct: 6 LRTENISFQYPGAATYALKDVSFSLFEGEWVSVIGQNGSGKSTLAKLLNGLFLPEAGTIT 65
Query: 78 IRGYNNDGXXXXXXXXXXXXK-VGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYL 136
+ ND K +G+VFQ P+ FV V D+V+FG G +E +
Sbjct: 66 V----NDTMILSEETVWDVRKQIGMVFQNPDNQFVGTTVQDDVVFGL-ENIG--MPREQM 118
Query: 137 ALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKAR 196
L +A+ V ++ L+ +PHSLSGG K+R+A+A L P +LILDE + LD + R
Sbjct: 119 VERLNQALRLVRMEDF-LNDEPHSLSGGQKQRVAIAGVLALQPSILILDEATSMLDPQGR 177
Query: 197 ADVVXXXXXXXXXX--TILVVSHDLKEMAALVDHSWRMDMGGFLVE 240
+VV T+L ++HDL+E AA D ++ G L E
Sbjct: 178 REVVETVRQLVNEKGITVLSITHDLEE-AAQSDRVIILNKGEILEE 222
|
|
| UNIPROTKB|A2RI02 ecfA2 "Energy-coupling factor transporter ATP-binding protein EcfA 2" [Lactococcus lactis subsp. cremoris MG1363 (taxid:416870)] | Back alignment and assigned GO terms |
|---|
Score = 272 (100.8 bits), Expect = 1.1e-23, P = 1.1e-23
Identities = 68/200 (34%), Positives = 105/200 (52%)
Query: 38 VSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGXXXXXXXXXXXX 97
+ + + S+ + G +GSGK+TLLQ L GL +PT G + +
Sbjct: 25 IDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRK 84
Query: 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLK-EYLALNLQRAINWVGLDGTSLDK 156
KVG+VFQFPE + VL +V FG P+ G + K E +A + VGL +K
Sbjct: 85 KVGVVFQFPESQLFEETVLKDVAFG-PQNFGIPKEKAEKIAAE---KLEMVGLADEFWEK 140
Query: 157 DPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVXXXXXXXXXX-TILVV 215
P LSGG RR+A+A L P++L+LDEP AGLD KAR +++ T+++V
Sbjct: 141 SPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLV 200
Query: 216 SHDLKEMAALVDHSWRMDMG 235
+H + ++A D+ + ++ G
Sbjct: 201 THLMDDVADYADYVYLLEKG 220
|
|
| UNIPROTKB|D5AQY6 nikO "Nickel import ATP-binding protein NikO" [Rhodobacter capsulatus SB 1003 (taxid:272942)] | Back alignment and assigned GO terms |
|---|
Score = 269 (99.8 bits), Expect = 2.3e-23, P = 2.3e-23
Identities = 79/223 (35%), Positives = 110/223 (49%)
Query: 19 EVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINI 78
E++ V + G V LNG+ +LP + G +GSGK+TLL+LL GL P +G I+
Sbjct: 6 ELQGVQFAYKG--VPALNGLDLTLPLGRRTALLGANGSGKSTLLRLLDGLQFPAAGRISA 63
Query: 79 RG--YNNDGXXXXXXXXXXXXKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYL 136
G +VG VFQ PE +V DE+ FG P Q KE +
Sbjct: 64 FGTPLTEAMFTDEAAAIAFRRRVGFVFQNPEVQLFCPSVFDELAFG-PLQLH--WPKERI 120
Query: 137 ALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKAR 196
+ RAI GL G + PH LSGG K+R+ALA L+ P++L+LDEP A LD +A
Sbjct: 121 RARVARAIAQFGL-GPLAGRPPHRLSGGEKKRVALASVLILDPEVLLLDEPTAALDPQAT 179
Query: 197 ADVVXXXXXXXXXX----TILVVSHDLKEMAALVDHSWRMDMG 235
D+ T++ SHDL +A + DH ++ G
Sbjct: 180 DDIAALLETEFGARNPGRTLIFSSHDLDLVARIADHVVVLEAG 222
|
|
| UNIPROTKB|Q81VQ1 ecfA2 "Energy-coupling factor transporter ATP-binding protein EcfA 2" [Bacillus anthracis (taxid:1392)] | Back alignment and assigned GO terms |
|---|
Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
Identities = 67/203 (33%), Positives = 103/203 (50%)
Query: 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGXXXXXXXXX 94
L V S P + I G +GSGK+T++Q L GL +PT+G++ I +
Sbjct: 23 LYDVDVSFPSGGYYAIIGHTGSGKSTMIQHLNGLLQPTNGTVQIGEHFISAGKKEKKLKP 82
Query: 95 XXXKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSL 154
KVG+VFQFPE + V ++ FG P G + E + AI VGL+ L
Sbjct: 83 LRKKVGVVFQFPEHQLFEETVEKDICFG-PTNFGVSE--EAAKQKAREAIELVGLEPELL 139
Query: 155 DKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVXXXXXXXXXX--TI 212
+ P LSGG RR+A+A L P++L+LDEP AGLD K + +++ T+
Sbjct: 140 ARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGQNELMEMFYKLHKEKGLTV 199
Query: 213 LVVSHDLKEMAALVDHSWRMDMG 235
++V+H++++ A + M G
Sbjct: 200 ILVTHNMEDAAKYAEQIVVMHKG 222
|
|
| TIGR_CMR|BA_0140 BA_0140 "ABC transporter, ATP-binding protein" [Bacillus anthracis str. Ames (taxid:198094)] | Back alignment and assigned GO terms |
|---|
Score = 263 (97.6 bits), Expect = 1.0e-22, P = 1.0e-22
Identities = 67/203 (33%), Positives = 103/203 (50%)
Query: 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGXXXXXXXXX 94
L V S P + I G +GSGK+T++Q L GL +PT+G++ I +
Sbjct: 23 LYDVDVSFPSGGYYAIIGHTGSGKSTMIQHLNGLLQPTNGTVQIGEHFISAGKKEKKLKP 82
Query: 95 XXXKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSL 154
KVG+VFQFPE + V ++ FG P G + E + AI VGL+ L
Sbjct: 83 LRKKVGVVFQFPEHQLFEETVEKDICFG-PTNFGVSE--EAAKQKAREAIELVGLEPELL 139
Query: 155 DKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVXXXXXXXXXX--TI 212
+ P LSGG RR+A+A L P++L+LDEP AGLD K + +++ T+
Sbjct: 140 ARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAGLDPKGQNELMEMFYKLHKEKGLTV 199
Query: 213 LVVSHDLKEMAALVDHSWRMDMG 235
++V+H++++ A + M G
Sbjct: 200 ILVTHNMEDAAKYAEQIVVMHKG 222
|
|
| UNIPROTKB|Q71WH8 ecfA1 "Energy-coupling factor transporter ATP-binding protein EcfA 1" [Listeria monocytogenes serotype 4b str. F2365 (taxid:265669)] | Back alignment and assigned GO terms |
|---|
Score = 248 (92.4 bits), Expect = 3.9e-21, P = 3.9e-21
Identities = 69/203 (33%), Positives = 96/203 (47%)
Query: 38 VSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGXXXXXXXXXXXX 97
V+ S S+ I G +GSGK+TLLQ L L PT G I +
Sbjct: 26 VNVSFDSGSYSAIIGHTGSGKSTLLQHLNALLMPTEGKITVGDREIVAGVKQKKLRDLRK 85
Query: 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKD 157
KVGIVFQFPE + V ++ FG P G + E L ++ I VGL L +
Sbjct: 86 KVGIVFQFPEAQLFEETVEKDICFG-PMNFGVSE--EDAKLRAKKVIYEVGLTEEILSRS 142
Query: 158 PHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVXXXXXXXXXX--TILVV 215
P LSGG RR+A+A L P++L+LDEP AGLD R +++ T ++V
Sbjct: 143 PFELSGGQMRRVAIAGVLAMDPEVLVLDEPTAGLDPHGREEIMEMFYNLHKEKGLTTVLV 202
Query: 216 SHDLKEMAALVDHSWRMDMGGFL 238
+H +++ A + M G L
Sbjct: 203 THSMEDAARYAEKIVLMKAGTVL 225
|
|
| TIGR_CMR|CHY_1630 CHY_1630 "cobalt ABC transporter, ATP-binding protein" [Carboxydothermus hydrogenoformans Z-2901 (taxid:246194)] | Back alignment and assigned GO terms |
|---|
Score = 245 (91.3 bits), Expect = 8.0e-21, P = 8.0e-21
Identities = 71/225 (31%), Positives = 116/225 (51%)
Query: 18 LEVRDVSY-RPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSI 76
+E+ ++++ P G + L+GVSF +PE+S +I G +G+GK+TLL L GL + G +
Sbjct: 5 VEIENLTFFYPDGNKA--LDGVSFVIPERSKTVILGHNGAGKSTLLLHLNGLYTASRGRV 62
Query: 77 NIRGYNNDGXXXXXXXXXXXXKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYL 136
I G KVG+VFQ P+ A + D+V FG P Q+ + KE L
Sbjct: 63 KIFGK----VINEENIREIRKKVGLVFQDPDDQLFASTIFDDVAFG-P-QNLELDKKEIL 116
Query: 137 ALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKAR 196
++ A+ V + ++ PH LS G K+R A+A L PD+++LDEP+A LD + +
Sbjct: 117 R-RVEEALKAVDMWDLR-ERPPHHLSLGQKKRAAIAGVLAMEPDIVVLDEPMAYLDPRGQ 174
Query: 197 ADVVXXXXXXXXXX-TILVVSHDLKEMAALVDHSWRMDMGGFLVE 240
++ T++V +HDL D+ ++ G + E
Sbjct: 175 EEITAILNRLNNEGKTVIVSTHDLDWALEWADYVVVLNAGRVVAE 219
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8LEF6 | AB11I_ARATH | No assigned EC number | 0.7892 | 0.9877 | 0.8705 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 245 | |||
| cd03225 | 211 | cd03225, ABC_cobalt_CbiO_domain1, First domain of | 3e-66 | |
| COG1122 | 235 | COG1122, CbiO, ABC-type cobalt transport system, A | 9e-62 | |
| cd03257 | 228 | cd03257, ABC_NikE_OppD_transporters, ATP-binding c | 1e-43 | |
| cd03293 | 220 | cd03293, ABC_NrtD_SsuB_transporters, ATP-binding c | 3e-42 | |
| cd03259 | 213 | cd03259, ABC_Carb_Solutes_like, ATP-binding casset | 9e-42 | |
| PRK13641 | 287 | PRK13641, cbiO, cobalt transporter ATP-binding sub | 3e-41 | |
| COG1131 | 293 | COG1131, CcmA, ABC-type multidrug transport system | 3e-41 | |
| COG1136 | 226 | COG1136, SalX, ABC-type antimicrobial peptide tran | 4e-41 | |
| PRK13637 | 287 | PRK13637, cbiO, cobalt transporter ATP-binding sub | 6e-41 | |
| COG1124 | 252 | COG1124, DppF, ABC-type dipeptide/oligopeptide/nic | 7e-41 | |
| COG3842 | 352 | COG3842, PotA, ABC-type spermidine/putrescine tran | 6e-40 | |
| PRK13634 | 290 | PRK13634, cbiO, cobalt transporter ATP-binding sub | 9e-40 | |
| COG1116 | 248 | COG1116, TauB, ABC-type nitrate/sulfonate/bicarbon | 2e-39 | |
| cd03255 | 218 | cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding casse | 3e-39 | |
| cd03230 | 173 | cd03230, ABC_DR_subfamily_A, ATP-binding cassette | 6e-39 | |
| cd03229 | 178 | cd03229, ABC_Class3, ATP-binding cassette domain o | 3e-38 | |
| COG1121 | 254 | COG1121, ZnuC, ABC-type Mn/Zn transport systems, A | 7e-38 | |
| cd03228 | 171 | cd03228, ABCC_MRP_Like, ATP-binding cassette domai | 8e-38 | |
| COG1127 | 263 | COG1127, Ttg2A, ABC-type transport system involved | 1e-37 | |
| PRK13635 | 279 | PRK13635, cbiO, cobalt transporter ATP-binding sub | 1e-37 | |
| cd03261 | 235 | cd03261, ABC_Org_Solvent_Resistant, ATP-binding ca | 7e-37 | |
| cd03226 | 205 | cd03226, ABC_cobalt_CbiO_domain2, Second domain of | 1e-36 | |
| cd03300 | 232 | cd03300, ABC_PotA_N, ATP-binding cassette domain o | 6e-36 | |
| PRK13649 | 280 | PRK13649, cbiO, cobalt transporter ATP-binding sub | 8e-36 | |
| cd03260 | 227 | cd03260, ABC_PstB_phosphate_transporter, ATP-bindi | 2e-35 | |
| PRK13648 | 269 | PRK13648, cbiO, cobalt transporter ATP-binding sub | 6e-35 | |
| cd03235 | 213 | cd03235, ABC_Metallic_Cations, ATP-binding cassett | 3e-34 | |
| cd03263 | 220 | cd03263, ABC_subfamily_A, ATP-binding cassette dom | 1e-33 | |
| PRK13646 | 286 | PRK13646, cbiO, cobalt transporter ATP-binding sub | 1e-33 | |
| COG3839 | 338 | COG3839, MalK, ABC-type sugar transport systems, A | 1e-33 | |
| PRK13639 | 275 | PRK13639, cbiO, cobalt transporter ATP-binding sub | 2e-33 | |
| COG0444 | 316 | COG0444, DppD, ABC-type dipeptide/oligopeptide/nic | 4e-33 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 5e-33 | |
| PRK13652 | 277 | PRK13652, cbiO, cobalt transporter ATP-binding sub | 7e-33 | |
| cd03219 | 236 | cd03219, ABC_Mj1267_LivG_branched, ATP-binding cas | 1e-32 | |
| PRK13632 | 271 | PRK13632, cbiO, cobalt transporter ATP-binding sub | 4e-32 | |
| PRK13651 | 305 | PRK13651, PRK13651, cobalt transporter ATP-binding | 5e-32 | |
| TIGR02142 | 354 | TIGR02142, modC_ABC, molybdenum ABC transporter, A | 1e-31 | |
| COG1123 | 539 | COG1123, COG1123, ATPase components of various ABC | 2e-31 | |
| COG1126 | 240 | COG1126, GlnQ, ABC-type polar amino acid transport | 2e-31 | |
| PRK13631 | 320 | PRK13631, cbiO, cobalt transporter ATP-binding sub | 2e-31 | |
| TIGR02857 | 529 | TIGR02857, CydD, thiol reductant ABC exporter, Cyd | 3e-31 | |
| COG1120 | 258 | COG1120, FepC, ABC-type cobalamin/Fe3+-siderophore | 4e-31 | |
| PRK13640 | 282 | PRK13640, cbiO, cobalt transporter ATP-binding sub | 6e-31 | |
| cd03297 | 214 | cd03297, ABC_ModC_molybdenum_transporter, ATP-bind | 8e-31 | |
| COG4987 | 573 | COG4987, CydC, ABC-type transport system involved | 8e-31 | |
| COG1118 | 345 | COG1118, CysA, ABC-type sulfate/molybdate transpor | 1e-30 | |
| COG0411 | 250 | COG0411, LivG, ABC-type branched-chain amino acid | 3e-30 | |
| PRK13636 | 283 | PRK13636, cbiO, cobalt transporter ATP-binding sub | 3e-30 | |
| COG4988 | 559 | COG4988, CydD, ABC-type transport system involved | 3e-30 | |
| cd03258 | 233 | cd03258, ABC_MetN_methionine_transporter, ATP-bind | 4e-30 | |
| cd03295 | 242 | cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cas | 7e-30 | |
| TIGR02211 | 221 | TIGR02211, LolD_lipo_ex, lipoprotein releasing sys | 1e-29 | |
| TIGR03265 | 353 | TIGR03265, PhnT2, putative 2-aminoethylphosphonate | 1e-29 | |
| PRK13643 | 288 | PRK13643, cbiO, cobalt transporter ATP-binding sub | 2e-29 | |
| cd03301 | 213 | cd03301, ABC_MalK_N, The N-terminal ATPase domain | 2e-29 | |
| COG4555 | 245 | COG4555, NatA, ABC-type Na+ transport system, ATPa | 4e-29 | |
| cd03214 | 180 | cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-bind | 4e-29 | |
| COG4148 | 352 | COG4148, ModC, ABC-type molybdate transport system | 5e-29 | |
| COG3638 | 258 | COG3638, COG3638, ABC-type phosphate/phosphonate t | 1e-28 | |
| COG4175 | 386 | COG4175, ProV, ABC-type proline/glycine betaine tr | 3e-28 | |
| COG1125 | 309 | COG1125, OpuBA, ABC-type proline/glycine betaine t | 3e-28 | |
| cd03294 | 269 | cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette | 3e-28 | |
| TIGR02673 | 214 | TIGR02673, FtsE, cell division ATP-binding protein | 3e-28 | |
| COG4608 | 268 | COG4608, AppF, ABC-type oligopeptide transport sys | 5e-28 | |
| PRK13650 | 279 | PRK13650, cbiO, cobalt transporter ATP-binding sub | 6e-28 | |
| TIGR01166 | 190 | TIGR01166, cbiO, cobalt transport protein ATP-bind | 9e-28 | |
| COG1135 | 339 | COG1135, AbcC, ABC-type metal ion transport system | 2e-27 | |
| PRK13647 | 274 | PRK13647, cbiO, cobalt transporter ATP-binding sub | 2e-27 | |
| TIGR02868 | 530 | TIGR02868, CydC, thiol reductant ABC exporter, Cyd | 4e-27 | |
| PRK09452 | 375 | PRK09452, potA, putrescine/spermidine ABC transpor | 6e-27 | |
| cd03268 | 208 | cd03268, ABC_BcrA_bacitracin_resist, ATP-binding c | 7e-27 | |
| cd03296 | 239 | cd03296, ABC_CysA_sulfate_importer, ATP-binding ca | 8e-27 | |
| TIGR02982 | 220 | TIGR02982, heterocyst_DevA, ABC exporter ATP-bindi | 9e-27 | |
| TIGR00968 | 237 | TIGR00968, 3a0106s01, sulfate ABC transporter, ATP | 1e-26 | |
| TIGR03608 | 206 | TIGR03608, L_ocin_972_ABC, putative bacteriocin ex | 1e-26 | |
| cd03299 | 235 | cd03299, ABC_ModC_like, ATP-binding cassette domai | 2e-26 | |
| cd03292 | 214 | cd03292, ABC_FtsE_transporter, ATP-binding cassett | 2e-26 | |
| cd03262 | 213 | cd03262, ABC_HisP_GlnQ, ATP-binding cassette domai | 2e-26 | |
| COG2274 | 709 | COG2274, SunT, ABC-type bacteriocin/lantibiotic ex | 3e-26 | |
| COG1132 | 567 | COG1132, MdlB, ABC-type multidrug transport system | 3e-26 | |
| cd03264 | 211 | cd03264, ABC_drug_resistance_like, ABC-type multid | 5e-26 | |
| COG2884 | 223 | COG2884, FtsE, Predicted ATPase involved in cell d | 6e-26 | |
| cd03265 | 220 | cd03265, ABC_DrrA, Daunorubicin/doxorubicin resist | 8e-26 | |
| COG3840 | 231 | COG3840, ThiQ, ABC-type thiamine transport system, | 1e-25 | |
| PRK11144 | 352 | PRK11144, modC, molybdate transporter ATP-binding | 2e-25 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-25 | |
| COG4619 | 223 | COG4619, COG4619, ABC-type uncharacterized transpo | 3e-25 | |
| PRK10247 | 225 | PRK10247, PRK10247, putative ABC transporter ATP-b | 6e-25 | |
| PRK11308 | 327 | PRK11308, dppF, dipeptide transporter ATP-binding | 9e-25 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 2e-24 | |
| cd03246 | 173 | cd03246, ABCC_Protease_Secretion, ATP-binding cass | 3e-24 | |
| PRK13633 | 280 | PRK13633, PRK13633, cobalt transporter ATP-binding | 3e-24 | |
| cd03256 | 241 | cd03256, ABC_PhnC_transporter, ATP-binding cassett | 4e-24 | |
| COG4525 | 259 | COG4525, TauB, ABC-type taurine transport system, | 6e-24 | |
| TIGR01186 | 363 | TIGR01186, proV, glycine betaine/L-proline transpo | 8e-24 | |
| cd03245 | 220 | cd03245, ABCC_bacteriocin_exporters, ATP-binding c | 9e-24 | |
| PRK13642 | 277 | PRK13642, cbiO, cobalt transporter ATP-binding sub | 1e-23 | |
| TIGR03864 | 236 | TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-bindi | 1e-23 | |
| COG4172 | 534 | COG4172, COG4172, ABC-type uncharacterized transpo | 2e-23 | |
| cd03224 | 222 | cd03224, ABC_TM1139_LivF_branched, ATP-binding cas | 2e-23 | |
| TIGR01187 | 325 | TIGR01187, potA, spermidine/putrescine ABC transpo | 2e-23 | |
| TIGR01184 | 230 | TIGR01184, ntrCD, nitrate transport ATP-binding su | 3e-23 | |
| TIGR02769 | 265 | TIGR02769, nickel_nikE, nickel import ATP-binding | 4e-23 | |
| COG1117 | 253 | COG1117, PstB, ABC-type phosphate transport system | 6e-23 | |
| COG1119 | 257 | COG1119, ModF, ABC-type molybdenum transport syste | 1e-22 | |
| PRK11247 | 257 | PRK11247, ssuB, aliphatic sulfonates transport ATP | 1e-22 | |
| PRK11629 | 233 | PRK11629, lolD, lipoprotein transporter ATP-bindin | 2e-22 | |
| cd03213 | 194 | cd03213, ABCG_EPDR, Eye pigment and drug resistanc | 3e-22 | |
| TIGR03258 | 362 | TIGR03258, PhnT, 2-aminoethylphosphonate ABC trans | 3e-22 | |
| TIGR01188 | 302 | TIGR01188, drrA, daunorubicin resistance ABC trans | 4e-22 | |
| COG0410 | 237 | COG0410, LivF, ABC-type branched-chain amino acid | 4e-22 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 5e-22 | |
| PRK11264 | 250 | PRK11264, PRK11264, putative amino-acid ABC transp | 6e-22 | |
| PRK14250 | 241 | PRK14250, PRK14250, phosphate ABC transporter ATP- | 7e-22 | |
| TIGR01277 | 213 | TIGR01277, thiQ, thiamine ABC transporter, ATP-bin | 7e-22 | |
| PRK11831 | 269 | PRK11831, PRK11831, putative ABC transporter ATP-b | 1e-21 | |
| PRK13537 | 306 | PRK13537, PRK13537, nodulation ABC transporter Nod | 1e-21 | |
| COG4181 | 228 | COG4181, COG4181, Predicted ABC-type transport sys | 2e-21 | |
| TIGR01842 | 544 | TIGR01842, type_I_sec_PrtD, type I secretion syste | 2e-21 | |
| TIGR03375 | 694 | TIGR03375, type_I_sec_LssB, type I secretion syste | 3e-21 | |
| COG0488 | 530 | COG0488, Uup, ATPase components of ABC transporter | 4e-21 | |
| cd03247 | 178 | cd03247, ABCC_cytochrome_bd, ATP-binding cassette | 5e-21 | |
| COG4604 | 252 | COG4604, CeuD, ABC-type enterochelin transport sys | 6e-21 | |
| PRK14261 | 253 | PRK14261, PRK14261, phosphate ABC transporter ATP- | 8e-21 | |
| TIGR02315 | 243 | TIGR02315, ABC_phnC, phosphonate ABC transporter, | 1e-20 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 2e-20 | |
| cd03298 | 211 | cd03298, ABC_ThiQ_thiamine_transporter, ATP-bindin | 2e-20 | |
| PRK11248 | 255 | PRK11248, tauB, taurine transporter ATP-binding su | 2e-20 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 2e-20 | |
| PRK10419 | 268 | PRK10419, nikE, nickel transporter ATP-binding pro | 3e-20 | |
| PRK14275 | 286 | PRK14275, PRK14275, phosphate ABC transporter ATP- | 3e-20 | |
| TIGR00972 | 247 | TIGR00972, 3a0107s01c2, phosphate ABC transporter, | 4e-20 | |
| COG4618 | 580 | COG4618, ArpD, ABC-type protease/lipase transport | 5e-20 | |
| cd03266 | 218 | cd03266, ABC_NatA_sodium_exporter, ATP-binding cas | 8e-20 | |
| TIGR03411 | 242 | TIGR03411, urea_trans_UrtD, urea ABC transporter, | 8e-20 | |
| PRK14264 | 305 | PRK14264, PRK14264, phosphate ABC transporter ATP- | 1e-19 | |
| COG4674 | 249 | COG4674, COG4674, Uncharacterized ABC-type transpo | 1e-19 | |
| cd03254 | 229 | cd03254, ABCC_Glucan_exporter_like, ATP-binding ca | 1e-19 | |
| PRK13645 | 289 | PRK13645, cbiO, cobalt transporter ATP-binding sub | 1e-19 | |
| COG4559 | 259 | COG4559, COG4559, ABC-type hemin transport system, | 2e-19 | |
| PRK13644 | 274 | PRK13644, cbiO, cobalt transporter ATP-binding sub | 2e-19 | |
| COG4586 | 325 | COG4586, COG4586, ABC-type uncharacterized transpo | 2e-19 | |
| TIGR02203 | 571 | TIGR02203, MsbA_lipidA, lipid A export permease/AT | 2e-19 | |
| PRK11432 | 351 | PRK11432, fbpC, ferric transporter ATP-binding sub | 3e-19 | |
| COG4167 | 267 | COG4167, SapF, ABC-type antimicrobial peptide tran | 3e-19 | |
| PRK11160 | 574 | PRK11160, PRK11160, cysteine/glutathione ABC trans | 5e-19 | |
| TIGR03740 | 223 | TIGR03740, galliderm_ABC, gallidermin-class lantib | 5e-19 | |
| COG1134 | 249 | COG1134, TagH, ABC-type polysaccharide/polyol phos | 5e-19 | |
| PRK10851 | 353 | PRK10851, PRK10851, sulfate/thiosulfate transporte | 6e-19 | |
| PRK11300 | 255 | PRK11300, livG, leucine/isoleucine/valine transpor | 6e-19 | |
| cd03218 | 232 | cd03218, ABC_YhbG, ATP-binding cassette component | 7e-19 | |
| cd03234 | 226 | cd03234, ABCG_White, White pigment protein homolog | 9e-19 | |
| PRK14254 | 285 | PRK14254, PRK14254, phosphate ABC transporter ATP- | 9e-19 | |
| PRK11153 | 343 | PRK11153, metN, DL-methionine transporter ATP-bind | 1e-18 | |
| PRK14249 | 251 | PRK14249, PRK14249, phosphate ABC transporter ATP- | 1e-18 | |
| cd03220 | 224 | cd03220, ABC_KpsT_Wzt, ATP-binding cassette compon | 1e-18 | |
| TIGR02314 | 343 | TIGR02314, ABC_MetN, D-methionine ABC transporter, | 2e-18 | |
| PRK14267 | 253 | PRK14267, PRK14267, phosphate ABC transporter ATP- | 2e-18 | |
| pfam00005 | 119 | pfam00005, ABC_tran, ABC transporter | 2e-18 | |
| cd03251 | 234 | cd03251, ABCC_MsbA, ATP-binding cassette domain of | 2e-18 | |
| TIGR01189 | 198 | TIGR01189, ccmA, heme ABC exporter, ATP-binding pr | 2e-18 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 2e-18 | |
| PRK14246 | 257 | PRK14246, PRK14246, phosphate ABC transporter ATP- | 2e-18 | |
| COG4133 | 209 | COG4133, CcmA, ABC-type transport system involved | 2e-18 | |
| PRK10535 | 648 | PRK10535, PRK10535, macrolide transporter ATP-bind | 3e-18 | |
| COG1101 | 263 | COG1101, PhnK, ABC-type uncharacterized transport | 3e-18 | |
| cd03249 | 238 | cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassett | 4e-18 | |
| PRK10771 | 232 | PRK10771, thiQ, thiamine transporter ATP-binding s | 8e-18 | |
| COG4107 | 258 | COG4107, PhnK, ABC-type phosphonate transport syst | 9e-18 | |
| PRK15112 | 267 | PRK15112, PRK15112, antimicrobial peptide ABC syst | 1e-17 | |
| PRK14240 | 250 | PRK14240, PRK14240, phosphate transporter ATP-bind | 1e-17 | |
| PRK13548 | 258 | PRK13548, hmuV, hemin importer ATP-binding subunit | 1e-17 | |
| COG4152 | 300 | COG4152, COG4152, ABC-type uncharacterized transpo | 2e-17 | |
| PRK11701 | 258 | PRK11701, phnK, phosphonate C-P lyase system prote | 2e-17 | |
| TIGR02323 | 253 | TIGR02323, CP_lyasePhnK, phosphonate C-P lyase sys | 2e-17 | |
| COG4136 | 213 | COG4136, COG4136, ABC-type uncharacterized transpo | 2e-17 | |
| PRK14273 | 254 | PRK14273, PRK14273, phosphate ABC transporter ATP- | 2e-17 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 2e-17 | |
| TIGR01288 | 303 | TIGR01288, nodI, ATP-binding ABC transporter famil | 2e-17 | |
| TIGR02770 | 230 | TIGR02770, nickel_nikD, nickel import ATP-binding | 2e-17 | |
| PRK13539 | 207 | PRK13539, PRK13539, cytochrome c biogenesis protei | 3e-17 | |
| COG1137 | 243 | COG1137, YhbG, ABC-type (unclassified) transport s | 3e-17 | |
| PRK14236 | 272 | PRK14236, PRK14236, phosphate transporter ATP-bind | 3e-17 | |
| PRK10619 | 257 | PRK10619, PRK10619, histidine/lysine/arginine/orni | 3e-17 | |
| PRK11607 | 377 | PRK11607, potG, putrescine transporter ATP-binding | 3e-17 | |
| TIGR02324 | 224 | TIGR02324, CP_lyasePhnL, phosphonate C-P lyase sys | 4e-17 | |
| TIGR03415 | 382 | TIGR03415, ABC_choXWV_ATP, choline ABC transporter | 4e-17 | |
| PRK14260 | 259 | PRK14260, PRK14260, phosphate ABC transporter ATP- | 4e-17 | |
| PRK14274 | 259 | PRK14274, PRK14274, phosphate ABC transporter ATP- | 5e-17 | |
| PRK14245 | 250 | PRK14245, PRK14245, phosphate ABC transporter ATP- | 6e-17 | |
| TIGR01193 | 708 | TIGR01193, bacteriocin_ABC, ABC-type bacteriocin t | 7e-17 | |
| TIGR03005 | 252 | TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine AB | 7e-17 | |
| cd03269 | 210 | cd03269, ABC_putative_ATPase, ATP-binding cassette | 8e-17 | |
| PRK09493 | 240 | PRK09493, glnQ, glutamine ABC transporter ATP-bind | 8e-17 | |
| PRK14257 | 329 | PRK14257, PRK14257, phosphate ABC transporter ATP- | 8e-17 | |
| PRK13536 | 340 | PRK13536, PRK13536, nodulation factor exporter sub | 8e-17 | |
| PRK14270 | 251 | PRK14270, PRK14270, phosphate ABC transporter ATP- | 9e-17 | |
| cd03217 | 200 | cd03217, ABC_FeS_Assembly, ABC-type transport syst | 1e-16 | |
| PRK14238 | 271 | PRK14238, PRK14238, phosphate transporter ATP-bind | 1e-16 | |
| COG4178 | 604 | COG4178, COG4178, ABC-type uncharacterized transpo | 1e-16 | |
| PRK14262 | 250 | PRK14262, PRK14262, phosphate ABC transporter ATP- | 2e-16 | |
| TIGR03522 | 301 | TIGR03522, GldA_ABC_ATP, gliding motility-associat | 2e-16 | |
| PRK10584 | 228 | PRK10584, PRK10584, putative ABC transporter ATP-b | 2e-16 | |
| PRK14244 | 251 | PRK14244, PRK14244, phosphate ABC transporter ATP- | 2e-16 | |
| PRK14256 | 252 | PRK14256, PRK14256, phosphate ABC transporter ATP- | 3e-16 | |
| cd03267 | 236 | cd03267, ABC_NatA_like, ATP-binding cassette domai | 4e-16 | |
| PRK14251 | 251 | PRK14251, PRK14251, phosphate ABC transporter ATP- | 5e-16 | |
| cd03215 | 182 | cd03215, ABC_Carb_Monos_II, Second domain of the A | 5e-16 | |
| PRK14237 | 267 | PRK14237, PRK14237, phosphate transporter ATP-bind | 5e-16 | |
| PRK14252 | 265 | PRK14252, PRK14252, phosphate ABC transporter ATP- | 5e-16 | |
| PRK11000 | 369 | PRK11000, PRK11000, maltose/maltodextrin transport | 5e-16 | |
| PRK14242 | 253 | PRK14242, PRK14242, phosphate transporter ATP-bind | 6e-16 | |
| PRK14268 | 258 | PRK14268, PRK14268, phosphate ABC transporter ATP- | 6e-16 | |
| PRK10908 | 222 | PRK10908, PRK10908, cell division protein FtsE; Pr | 6e-16 | |
| TIGR03873 | 256 | TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC tra | 8e-16 | |
| PRK11174 | 588 | PRK11174, PRK11174, cysteine/glutathione ABC trans | 1e-15 | |
| PRK14265 | 274 | PRK14265, PRK14265, phosphate ABC transporter ATP- | 1e-15 | |
| PRK14243 | 264 | PRK14243, PRK14243, phosphate transporter ATP-bind | 2e-15 | |
| PRK14272 | 252 | PRK14272, PRK14272, phosphate ABC transporter ATP- | 3e-15 | |
| cd03250 | 204 | cd03250, ABCC_MRP_domain1, ATP-binding cassette do | 3e-15 | |
| PRK14255 | 252 | PRK14255, PRK14255, phosphate ABC transporter ATP- | 4e-15 | |
| PRK10070 | 400 | PRK10070, PRK10070, glycine betaine transporter AT | 4e-15 | |
| COG1129 | 500 | COG1129, MglA, ABC-type sugar transport system, AT | 5e-15 | |
| COG0396 | 251 | COG0396, sufC, Cysteine desulfurase activator ATPa | 5e-15 | |
| PRK14271 | 276 | PRK14271, PRK14271, phosphate ABC transporter ATP- | 5e-15 | |
| PRK14253 | 249 | PRK14253, PRK14253, phosphate ABC transporter ATP- | 6e-15 | |
| PRK10790 | 592 | PRK10790, PRK10790, putative multidrug transporter | 6e-15 | |
| PRK09473 | 330 | PRK09473, oppD, oligopeptide transporter ATP-bindi | 6e-15 | |
| COG4161 | 242 | COG4161, ArtP, ABC-type arginine transport system, | 7e-15 | |
| TIGR03410 | 230 | TIGR03410, urea_trans_UrtE, urea ABC transporter, | 7e-15 | |
| PRK14247 | 250 | PRK14247, PRK14247, phosphate ABC transporter ATP- | 1e-14 | |
| PRK14248 | 268 | PRK14248, PRK14248, phosphate ABC transporter ATP- | 1e-14 | |
| PRK14266 | 250 | PRK14266, PRK14266, phosphate ABC transporter ATP- | 1e-14 | |
| COG4598 | 256 | COG4598, HisP, ABC-type histidine transport system | 1e-14 | |
| cd03252 | 237 | cd03252, ABCC_Hemolysin, ATP-binding cassette doma | 2e-14 | |
| PRK15056 | 272 | PRK15056, PRK15056, manganese/iron transporter ATP | 2e-14 | |
| PRK14235 | 267 | PRK14235, PRK14235, phosphate transporter ATP-bind | 2e-14 | |
| PRK11176 | 582 | PRK11176, PRK11176, lipid transporter ATP-binding/ | 2e-14 | |
| PRK11231 | 255 | PRK11231, fecE, iron-dicitrate transporter ATP-bin | 4e-14 | |
| cd00267 | 157 | cd00267, ABC_ATPase, ATP-binding cassette transpor | 5e-14 | |
| COG3845 | 501 | COG3845, COG3845, ABC-type uncharacterized transpo | 6e-14 | |
| PRK11124 | 242 | PRK11124, artP, arginine transporter ATP-binding s | 6e-14 | |
| cd03231 | 201 | cd03231, ABC_CcmA_heme_exporter, Cytochrome c biog | 7e-14 | |
| PRK14239 | 252 | PRK14239, PRK14239, phosphate transporter ATP-bind | 7e-14 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 9e-14 | |
| PRK15079 | 331 | PRK15079, PRK15079, oligopeptide ABC transporter A | 9e-14 | |
| COG4615 | 546 | COG4615, PvdE, ABC-type siderophore export system, | 1e-13 | |
| PRK14258 | 261 | PRK14258, PRK14258, phosphate ABC transporter ATP- | 1e-13 | |
| PRK10744 | 260 | PRK10744, pstB, phosphate transporter ATP-binding | 2e-13 | |
| PRK10575 | 265 | PRK10575, PRK10575, iron-hydroxamate transporter A | 2e-13 | |
| TIGR00955 | 617 | TIGR00955, 3a01204, The Eye Pigment Precursor Tran | 2e-13 | |
| PRK14269 | 246 | PRK14269, PRK14269, phosphate ABC transporter ATP- | 3e-13 | |
| cd03248 | 226 | cd03248, ABCC_TAP, ATP-binding cassette domain of | 4e-13 | |
| COG4778 | 235 | COG4778, PhnL, ABC-type phosphonate transport syst | 4e-13 | |
| cd03223 | 166 | cd03223, ABCD_peroxisomal_ALDP, ATP-binding casset | 5e-13 | |
| PRK14263 | 261 | PRK14263, PRK14263, phosphate ABC transporter ATP- | 5e-13 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 6e-13 | |
| TIGR00958 | 711 | TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) | 7e-13 | |
| PRK15134 | 529 | PRK15134, PRK15134, microcin C ABC transporter ATP | 8e-13 | |
| PRK09536 | 402 | PRK09536, btuD, corrinoid ABC transporter ATPase; | 8e-13 | |
| PRK11650 | 356 | PRK11650, ugpC, glycerol-3-phosphate transporter A | 8e-13 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 8e-13 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 1e-12 | |
| cd03253 | 236 | cd03253, ABCC_ATM1_transporter, ATP-binding casset | 2e-12 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 2e-12 | |
| cd03237 | 246 | cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-bin | 2e-12 | |
| TIGR02204 | 576 | TIGR02204, MsbA_rel, ABC transporter, permease/ATP | 2e-12 | |
| TIGR03797 | 686 | TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin syste | 2e-12 | |
| PRK09544 | 251 | PRK09544, znuC, high-affinity zinc transporter ATP | 3e-12 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 4e-12 | |
| TIGR03269 | 520 | TIGR03269, met_CoM_red_A2, methyl coenzyme M reduc | 7e-12 | |
| PRK10762 | 501 | PRK10762, PRK10762, D-ribose transporter ATP bindi | 8e-12 | |
| TIGR03771 | 223 | TIGR03771, anch_rpt_ABC, anchored repeat-type ABC | 9e-12 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 1e-11 | |
| TIGR01192 | 585 | TIGR01192, chvA, glucan exporter ATP-binding prote | 1e-11 | |
| COG1245 | 591 | COG1245, COG1245, Predicted ATPase, RNase L inhibi | 2e-11 | |
| PRK14241 | 258 | PRK14241, PRK14241, phosphate transporter ATP-bind | 3e-11 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 3e-11 | |
| PRK13540 | 200 | PRK13540, PRK13540, cytochrome c biogenesis protei | 3e-11 | |
| PRK10418 | 254 | PRK10418, nikD, nickel transporter ATP-binding pro | 4e-11 | |
| PRK13638 | 271 | PRK13638, cbiO, cobalt transporter ATP-binding sub | 5e-11 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 5e-11 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 6e-11 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 9e-11 | |
| TIGR01257 | 2272 | TIGR01257, rim_protein, retinal-specific rim ABC t | 1e-10 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 1e-10 | |
| cd03244 | 221 | cd03244, ABCC_MRP_domain2, ATP-binding cassette do | 1e-10 | |
| PRK10522 | 547 | PRK10522, PRK10522, multidrug transporter membrane | 1e-10 | |
| PRK09700 | 510 | PRK09700, PRK09700, D-allose transporter ATP-bindi | 2e-10 | |
| PRK14259 | 269 | PRK14259, PRK14259, phosphate ABC transporter ATP- | 2e-10 | |
| PRK13657 | 588 | PRK13657, PRK13657, cyclic beta-1,2-glucan ABC tra | 2e-10 | |
| TIGR01978 | 243 | TIGR01978, sufC, FeS assembly ATPase SufC | 2e-10 | |
| TIGR01846 | 694 | TIGR01846, type_I_sec_HlyB, type I secretion syste | 3e-10 | |
| PRK15439 | 510 | PRK15439, PRK15439, autoinducer 2 ABC transporter | 4e-10 | |
| TIGR03796 | 710 | TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin syste | 4e-10 | |
| cd03369 | 207 | cd03369, ABCC_NFT1, ATP-binding cassette domain 2 | 5e-10 | |
| PRK10253 | 265 | PRK10253, PRK10253, iron-enterobactin transporter | 6e-10 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 6e-10 | |
| PRK11022 | 326 | PRK11022, dppD, dipeptide transporter ATP-binding | 9e-10 | |
| COG4138 | 248 | COG4138, BtuD, ABC-type cobalamin transport system | 9e-10 | |
| PRK13409 | 590 | PRK13409, PRK13409, putative ATPase RIL; Provision | 1e-09 | |
| TIGR01194 | 555 | TIGR01194, cyc_pep_trnsptr, cyclic peptide transpo | 1e-09 | |
| PRK15093 | 330 | PRK15093, PRK15093, antimicrobial peptide ABC tran | 2e-09 | |
| cd03216 | 163 | cd03216, ABC_Carb_Monos_I, First domain of the ATP | 3e-09 | |
| PRK03695 | 248 | PRK03695, PRK03695, vitamin B12-transporter ATPase | 3e-09 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 5e-09 | |
| PRK10261 | 623 | PRK10261, PRK10261, glutathione transporter ATP-bi | 6e-09 | |
| cd03270 | 226 | cd03270, ABC_UvrA_I, ATP-binding cassette domain I | 7e-09 | |
| TIGR03719 | 552 | TIGR03719, ABC_ABC_ChvD, ATP-binding cassette prot | 8e-09 | |
| PRK11147 | 635 | PRK11147, PRK11147, ABC transporter ATPase compone | 9e-09 | |
| PRK10895 | 241 | PRK10895, PRK10895, lipopolysaccharide ABC transpo | 1e-08 | |
| TIGR00630 | 925 | TIGR00630, uvra, excinuclease ABC, A subunit | 1e-08 | |
| cd03238 | 176 | cd03238, ABC_UvrA, ATP-binding cassette domain of | 1e-08 | |
| COG0178 | 935 | COG0178, UvrA, Excinuclease ATPase subunit [DNA re | 2e-08 | |
| cd03290 | 218 | cd03290, ABCC_SUR1_N, ATP-binding cassette domain | 2e-08 | |
| PRK10789 | 569 | PRK10789, PRK10789, putative multidrug transporter | 3e-08 | |
| PRK11614 | 237 | PRK11614, livF, leucine/isoleucine/valine transpor | 3e-08 | |
| cd03227 | 162 | cd03227, ABC_Class2, ATP-binding cassette domain o | 3e-08 | |
| cd03222 | 177 | cd03222, ABC_RNaseL_inhibitor, ATP-binding cassett | 4e-08 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 5e-08 | |
| cd03289 | 275 | cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 | 6e-08 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 7e-08 | |
| TIGR02633 | 500 | TIGR02633, xylG, D-xylose ABC transporter, ATP-bin | 8e-08 | |
| COG4170 | 330 | COG4170, SapD, ABC-type antimicrobial peptide tran | 8e-08 | |
| PRK10636 | 638 | PRK10636, PRK10636, putative ABC transporter ATP-b | 1e-07 | |
| PRK13547 | 272 | PRK13547, hmuV, hemin importer ATP-binding subunit | 1e-07 | |
| PRK13541 | 195 | PRK13541, PRK13541, cytochrome c biogenesis protei | 1e-07 | |
| PRK10938 | 490 | PRK10938, PRK10938, putative molybdenum transport | 2e-07 | |
| PRK13549 | 506 | PRK13549, PRK13549, xylose transporter ATP-binding | 2e-07 | |
| COG0419 | 908 | COG0419, SbcC, ATPase involved in DNA repair [DNA | 2e-07 | |
| PLN03211 | 659 | PLN03211, PLN03211, ABC transporter G-25; Provisio | 2e-07 | |
| cd03236 | 255 | cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-bin | 4e-07 | |
| TIGR00957 | 1522 | TIGR00957, MRP_assoc_pro, multi drug resistance-as | 4e-07 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 6e-07 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 8e-07 | |
| PRK13545 | 549 | PRK13545, tagH, teichoic acids export protein ATP- | 8e-07 | |
| cd03221 | 144 | cd03221, ABCF_EF-3, ATP-binding cassette domain of | 1e-06 | |
| COG5265 | 497 | COG5265, ATM1, ABC-type transport system involved | 1e-06 | |
| TIGR00956 | 1394 | TIGR00956, 3a01205, Pleiotropic Drug Resistance (P | 2e-06 | |
| PLN03140 | 1470 | PLN03140, PLN03140, ABC transporter G family membe | 2e-06 | |
| cd03232 | 192 | cd03232, ABCG_PDR_domain2, Second domain of the pl | 2e-06 | |
| PRK09984 | 262 | PRK09984, PRK09984, phosphonate/organophosphate es | 2e-06 | |
| PRK13543 | 214 | PRK13543, PRK13543, cytochrome c biogenesis protei | 2e-06 | |
| TIGR01271 | 1490 | TIGR01271, CFTR_protein, cystic fibrosis transmemb | 3e-06 | |
| cd03291 | 282 | cd03291, ABCC_CFTR1, ATP-binding cassette domain o | 3e-06 | |
| COG2401 | 593 | COG2401, COG2401, ABC-type ATPase fused to a predi | 3e-06 | |
| cd03240 | 204 | cd03240, ABC_Rad50, ATP-binding cassette domain of | 3e-06 | |
| smart00382 | 148 | smart00382, AAA, ATPases associated with a variety | 3e-06 | |
| PRK11288 | 501 | PRK11288, araG, L-arabinose transporter ATP-bindin | 5e-06 | |
| CHL00131 | 252 | CHL00131, ycf16, sulfate ABC transporter protein; | 7e-06 | |
| PRK11819 | 556 | PRK11819, PRK11819, putative ABC transporter ATP-b | 8e-06 | |
| PRK03918 | 880 | PRK03918, PRK03918, chromosome segregation protein | 9e-06 | |
| PRK00349 | 943 | PRK00349, uvrA, excinuclease ABC subunit A; Review | 1e-05 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 2e-05 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 2e-05 | |
| cd03241 | 276 | cd03241, ABC_RecN, ATP-binding cassette domain of | 2e-05 | |
| PLN03073 | 718 | PLN03073, PLN03073, ABC transporter F family; Prov | 3e-05 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 3e-05 | |
| pfam13304 | 256 | pfam13304, AAA_21, AAA domain | 4e-05 | |
| PRK00635 | 1809 | PRK00635, PRK00635, excinuclease ABC subunit A; Pr | 4e-05 | |
| PRK13538 | 204 | PRK13538, PRK13538, cytochrome c biogenesis protei | 6e-05 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 6e-05 | |
| PRK09580 | 248 | PRK09580, sufC, cysteine desulfurase ATPase compon | 7e-05 | |
| PLN03130 | 1622 | PLN03130, PLN03130, ABC transporter C family membe | 8e-05 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 2e-04 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 3e-04 | |
| PRK02224 | 880 | PRK02224, PRK02224, chromosome segregation protein | 3e-04 | |
| PRK10982 | 491 | PRK10982, PRK10982, galactose/methyl galaxtoside t | 5e-04 | |
| PRK15064 | 530 | PRK15064, PRK15064, ABC transporter ATP-binding pr | 7e-04 | |
| pfam13304 | 256 | pfam13304, AAA_21, AAA domain | 0.001 | |
| PLN03232 | 1495 | PLN03232, PLN03232, ABC transporter C family membe | 0.001 | |
| cd03271 | 261 | cd03271, ABC_UvrA_II, ATP-binding cassette domain | 0.001 | |
| TIGR00630 | 925 | TIGR00630, uvra, excinuclease ABC, A subunit | 0.002 | |
| PTZ00265 | 1466 | PTZ00265, PTZ00265, multidrug resistance protein ( | 0.002 | |
| TIGR00954 | 659 | TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Tra | 0.003 | |
| pfam13481 | 154 | pfam13481, AAA_25, AAA domain | 0.004 | |
| cd03279 | 213 | cd03279, ABC_sbcCD, ATP-binding cassette domain of | 0.004 |
| >gnl|CDD|213192 cd03225, ABC_cobalt_CbiO_domain1, First domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 203 bits (520), Expect = 3e-66
Identities = 86/219 (39%), Positives = 127/219 (57%), Gaps = 11/219 (5%)
Query: 19 EVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINI 78
E++++S+ P L+ +S ++ + F LI G +GSGK+TLL+LL GL PTSG + +
Sbjct: 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLV 60
Query: 79 RGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLAL 138
G + S + L KVG+VFQ P+ F V +EV FG G L E
Sbjct: 61 DGKDLT---KLSLKELR-RKVGLVFQNPDDQFFGPTVEEEVAFG-LENLG---LPEEEIE 112
Query: 139 N-LQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARA 197
++ A+ VGL+G D+ P +LSGG K+R+A+A L PD+L+LDEP AGLD R
Sbjct: 113 ERVEEALELVGLEGL-RDRSPFTLSGGQKQRVAIAGVLAMDPDILLLDEPTAGLDPAGRR 171
Query: 198 DVVKLLKHLKKE-LTILVVSHDLKEMAALVDHSWRMDMG 235
++++LLK LK E TI++V+HDL + L D ++ G
Sbjct: 172 ELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDG 210
|
Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 211 |
| >gnl|CDD|224047 COG1122, CbiO, ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 193 bits (492), Expect = 9e-62
Identities = 88/220 (40%), Positives = 127/220 (57%), Gaps = 10/220 (4%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
+E ++S+R PG + L VS + + L+ G +GSGK+TLL+LL GL KPTSG +
Sbjct: 4 IEAENLSFRYPG-RKAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVL 62
Query: 78 IRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLA 137
+ G D S L KVG+VFQ P+ V DEV FG G +E +
Sbjct: 63 VDGL--DTSSEKSLLELRQ-KVGLVFQNPDDQLFGPTVEDEVAFG-LENLGLP--REEIE 116
Query: 138 LNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARA 197
+ A+ VGL+ LD+ P +LSGG K+R+A+A L P++L+LDEP AGLD K R
Sbjct: 117 ERVAEALELVGLEEL-LDRPPFNLSGGQKQRVAIAGVLAMGPEILLLDEPTAGLDPKGRR 175
Query: 198 DVVKLLKHLKKE--LTILVVSHDLKEMAALVDHSWRMDMG 235
++++LLK LK+E TI++V+HDL+ + D +D G
Sbjct: 176 ELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDG 215
|
Length = 235 |
| >gnl|CDD|213224 cd03257, ABC_NikE_OppD_transporters, ATP-binding cassette domain of nickel/oligopeptides specific transporters | Back alignment and domain information |
|---|
Score = 146 bits (371), Expect = 1e-43
Identities = 84/236 (35%), Positives = 126/236 (53%), Gaps = 22/236 (9%)
Query: 18 LEVRD--VSYRPPGTQVDILNGVSFSLPE-KSFGLIFGRSGSGKTTLLQLLAGLSKPTSG 74
LEV++ VS+ G V L+ VSFS+ + ++ GL+ G SGSGK+TL + + GL KPTSG
Sbjct: 2 LEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLV-GESGSGKSTLARAILGLLKPTSG 60
Query: 75 SINIRGYNNDGEPNNSPEPLPP--EKVGIVFQ-----FPERYFVADNVLDEVIFGWPRQS 127
SI G + S +++ +VFQ R + + + E + + S
Sbjct: 61 SIIFDGKD---LLKLSRRLRKIRRKEIQMVFQDPMSSLNPRMTIGE-QIAEPLRIHGKLS 116
Query: 128 GSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEP 187
KE + L L VGL L++ PH LSGG ++R+A+A L P LLI DEP
Sbjct: 117 KKEARKEAVLLLLVG----VGLPEEVLNRYPHELSGGQRQRVAIARALALNPKLLIADEP 172
Query: 188 LAGLDWKARADVVKLLKHLKKE--LTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241
+ LD +A ++ LLK L++E LT+L ++HDL +A + D M G +VE+
Sbjct: 173 TSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMY-AGKIVEE 227
|
The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE). The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. Length = 228 |
| >gnl|CDD|213260 cd03293, ABC_NrtD_SsuB_transporters, ATP-binding cassette domain of the nitrate and sulfonate transporters | Back alignment and domain information |
|---|
Score = 142 bits (362), Expect = 3e-42
Identities = 80/226 (35%), Positives = 114/226 (50%), Gaps = 40/226 (17%)
Query: 18 LEVRDVS--YRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGS 75
LEVR+VS Y G V L +S S+ E F + G SG GK+TLL+++AGL +PTSG
Sbjct: 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGE 60
Query: 76 INIRGYNNDGEPNNSPEPLPPEKVGIVFQ----FPERYFVADNVLDEVIFG-----WPRQ 126
+ + DGEP P P G VFQ P VLD V G P+
Sbjct: 61 VLV-----DGEPVTGPGP----DRGYVFQQDALLPWL-----TVLDNVALGLELQGVPKA 106
Query: 127 SGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDE 186
+ +E + + VGL G + PH LSGG ++R+ALA L PD+L+LDE
Sbjct: 107 ----EARER----AEELLELVGLSG-FENAYPHQLSGGMRQRVALARALAVDPDVLLLDE 157
Query: 187 PLAGLDW----KARADVVKLLKHLKKELTILVVSHDLKEMAALVDH 228
P + LD + + +++ + + K T+L+V+HD+ E L D
Sbjct: 158 PFSALDALTREQLQEELLDIWRETGK--TVLLVTHDIDEAVFLADR 201
|
NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|213226 cd03259, ABC_Carb_Solutes_like, ATP-binding cassette domain of the carbohydrate and solute transporters-like | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 9e-42
Identities = 83/224 (37%), Positives = 122/224 (54%), Gaps = 37/224 (16%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
LE++ +S + L+ +S ++ F + G SG GKTTLL+L+AGL +P SG I
Sbjct: 1 LELKGLSKTYGSVRA--LDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEIL 58
Query: 78 IRGYNNDGEPNNSPEPLPPEK--VGIVFQ----FPERYFVADNVLDEVIFG-----WPRQ 126
I DG +PPE+ +G+VFQ FP V + + FG P+
Sbjct: 59 I-----DGRDVTG---VPPERRNIGMVFQDYALFPHL-----TVAENIAFGLKLRGVPKA 105
Query: 127 SGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDE 186
+++E L L VGL+G L++ PH LSGG ++R+ALA L + P LL+LDE
Sbjct: 106 EIRARVRELLEL--------VGLEGL-LNRYPHELSGGQQQRVALARALAREPSLLLLDE 156
Query: 187 PLAGLDWKARADVVKLLKHLKKEL--TILVVSHDLKEMAALVDH 228
PL+ LD K R ++ + LK L++EL T + V+HD +E AL D
Sbjct: 157 PLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADR 200
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 213 |
| >gnl|CDD|237456 PRK13641, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 142 bits (359), Expect = 3e-41
Identities = 81/225 (36%), Positives = 126/225 (56%), Gaps = 13/225 (5%)
Query: 18 LEVRDVSY-RPPGT--QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSG 74
++ +V Y PGT + L+ +SF L E SF + G +GSGK+TL+Q L KP+SG
Sbjct: 3 IKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSG 62
Query: 75 SINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKE 134
+I I GY+ E N +KV +VFQFPE + VL +V FG P+ G + +
Sbjct: 63 TITIAGYHITPETGNKNLKKLRKKVSLVFQFPEAQLFENTVLKDVEFG-PKNFGFSEDEA 121
Query: 135 YLALNLQRAINW---VGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGL 191
++A+ W VGL + K P LSGG RR+A+A + P++L LDEP AGL
Sbjct: 122 K-----EKALKWLKKVGLSEDLISKSPFELSGGQMRRVAIAGVMAYEPEILCLDEPAAGL 176
Query: 192 DWKARADVVKLLKHLKKE-LTILVVSHDLKEMAALVDHSWRMDMG 235
D + R ++++L K +K T+++V+H++ ++A D ++ G
Sbjct: 177 DPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHG 221
|
Length = 287 |
| >gnl|CDD|224054 COG1131, CcmA, ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 142 bits (360), Expect = 3e-41
Identities = 83/232 (35%), Positives = 132/232 (56%), Gaps = 25/232 (10%)
Query: 17 CLEVRDVSYRPPGTQVDILNGVSFSLPE-KSFGLIFGRSGSGKTTLLQLLAGLSKPTSGS 75
+EVR+++ + G L+GVSF + + FGL+ G +G+GKTTLL++LAGL KPTSG
Sbjct: 4 VIEVRNLTKKY-GGDKTALDGVSFEVEPGEIFGLL-GPNGAGKTTLLKILAGLLKPTSGE 61
Query: 76 INIRGYNNDGEPNNSPEPLPPEKVGIVFQ---FPERYFVADNVLDEV--IFGWPRQSGSI 130
I + GY+ EP ++G V Q V +N L+ ++G ++
Sbjct: 62 ILVLGYDVVKEPAKVRR-----RIGYVPQEPSLYPELTVREN-LEFFARLYGLSKEEAEE 115
Query: 131 QLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAG 190
+++E L L GL+ +K +LSGG K+RL++A+ L+ P+LLILDEP +G
Sbjct: 116 RIEELLEL--------FGLED-KANKKVRTLSGGMKQRLSIALALLHDPELLILDEPTSG 166
Query: 191 LDWKARADVVKLLKHLKKE--LTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240
LD ++R ++ +LL+ L KE +TIL+ +H L+E L D ++ G + E
Sbjct: 167 LDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAE 218
|
Length = 293 |
| >gnl|CDD|224059 COG1136, SalX, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 139 bits (354), Expect = 4e-41
Identities = 78/232 (33%), Positives = 116/232 (50%), Gaps = 15/232 (6%)
Query: 18 LEVRDVS--YRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGS 75
+E+++VS Y G +V+ L V+ + F I G SGSGK+TLL LL GL KPTSG
Sbjct: 2 IELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGE 61
Query: 76 INIRGYNNDGEPNNSPEPLPPEKVGIVFQFP---ERYFVADNVLDEVIFGWPRQSGSIQL 132
+ I G + L +K+G VFQ V +NV ++ S
Sbjct: 62 VLINGKDLTKLSEKELAKLRRKKIGFVFQNFNLLPDLTVLENVELPLLI----AGKSAGR 117
Query: 133 KEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLD 192
++ A L +GL+ L K P LSGG ++R+A+A L+ P +++ DEP LD
Sbjct: 118 RKRAAEELLEV---LGLEDRLLKKKPSELSGGQQQRVAIARALINNPKIILADEPTGNLD 174
Query: 193 WKARADVVKLLKHLKKEL--TILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242
K +V++LL+ L KE TI++V+HD E+A D + G E+
Sbjct: 175 SKTAKEVLELLRELNKERGKTIIMVTHDP-ELAKYADRVIELKDGKIEEEEL 225
|
Length = 226 |
| >gnl|CDD|237455 PRK13637, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 141 bits (357), Expect = 6e-41
Identities = 81/204 (39%), Positives = 120/204 (58%), Gaps = 8/204 (3%)
Query: 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94
L+ V+ + + F + G +GSGK+TL+Q L GL KPTSG I I G + + +
Sbjct: 23 LDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKVKLSDI- 81
Query: 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSL 154
+KVG+VFQ+PE + + ++ FG P G +E + ++RA+N VGLD
Sbjct: 82 -RKKVGLVFQYPEYQLFEETIEKDIAFG-PINLG--LSEEEIENRVKRAMNIVGLDYEDY 137
Query: 155 -DKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKE--LT 211
DK P LSGG KRR+A+A + P +LILDEP AGLD K R +++ +K L KE +T
Sbjct: 138 KDKSPFELSGGQKRRVAIAGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMT 197
Query: 212 ILVVSHDLKEMAALVDHSWRMDMG 235
I++VSH ++++A L D M+ G
Sbjct: 198 IILVSHSMEDVAKLADRIIVMNKG 221
|
Length = 287 |
| >gnl|CDD|224049 COG1124, DppF, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 140 bits (354), Expect = 7e-41
Identities = 88/241 (36%), Positives = 121/241 (50%), Gaps = 38/241 (15%)
Query: 18 LEVRDVS--YRPPGTQVDILNGVSFSLPE-KSFGLIFGRSGSGKTTLLQLLAGLSKPTSG 74
L VR++S Y LN VS + ++ G++ G SGSGK+TL +LLAGL KP+SG
Sbjct: 4 LSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIV-GESGSGKSTLARLLAGLEKPSSG 62
Query: 75 SINIRGYNNDGEPNNSPEPLPPEK--------VGIVFQFPER----YFVADNVLDEVIFG 122
SI + G +PL P+K V +VFQ P +L E
Sbjct: 63 SILLDG-----------KPLAPKKRAKAFYRPVQMVFQDPYSSLNPRRTVGRILSE---- 107
Query: 123 WPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLL 182
P + + + L VGL + LD+ PH LSGG ++R+A+A L+ P LL
Sbjct: 108 -PLRPHGLSKSQQRIAELLDQ---VGLPPSFLDRRPHELSGGQRQRIAIARALIPEPKLL 163
Query: 183 ILDEPLAGLDWKARADVVKLLKHLKKE--LTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240
ILDEP + LD +A ++ LL LKKE LT L +SHDL + + D MD G +VE
Sbjct: 164 ILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQ-IVE 222
Query: 241 Q 241
Sbjct: 223 I 223
|
Length = 252 |
| >gnl|CDD|226361 COG3842, PotA, ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 140 bits (355), Expect = 6e-40
Identities = 83/225 (36%), Positives = 120/225 (53%), Gaps = 38/225 (16%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
LE+R+VS ++ +S + + F + G SG GKTTLL+++AG +P+SG I
Sbjct: 6 LEIRNVSKSFGDFTA--VDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEIL 63
Query: 78 IRGYNNDGEPNNSPEPLPPEK--VGIVFQ----FPERYFVADNVLDEVIFG------WPR 125
+ DGE +PPEK +G+VFQ FP V + V FG +
Sbjct: 64 L-----DGEDITD---VPPEKRPIGMVFQSYALFPHM-----TVEENVAFGLKVRKKLKK 110
Query: 126 QSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILD 185
+++E L L VGL+G D+ PH LSGG ++R+ALA LV P +L+LD
Sbjct: 111 AEIKARVEEALEL--------VGLEG-FADRKPHQLSGGQQQRVALARALVPEPKVLLLD 161
Query: 186 EPLAGLDWKARADVVKLLKHLKKEL--TILVVSHDLKEMAALVDH 228
EPL+ LD K R + K LK L++EL T + V+HD +E A+ D
Sbjct: 162 EPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDR 206
|
Length = 352 |
| >gnl|CDD|237454 PRK13634, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 138 bits (350), Expect = 9e-40
Identities = 86/228 (37%), Positives = 120/228 (52%), Gaps = 22/228 (9%)
Query: 21 RDVSYR-PPGT--QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
+ V +R T + L V+ S+P S+ I G +GSGK+TLLQ L GL +PTSG++
Sbjct: 6 QKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVT 65
Query: 78 IRGYNNDGE----PNNSPEPLPP--EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQ 131
I GE + L P +KVGIVFQFPE + V ++ FG P G
Sbjct: 66 I------GERVITAGKKNKKLKPLRKKVGIVFQFPEHQLFEETVEKDICFG-PMNFG--- 115
Query: 132 LKEYLALNLQR-AINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAG 190
+ E A R I VGL L + P LSGG RR+A+A L P++L+LDEP AG
Sbjct: 116 VSEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAGVLAMEPEVLVLDEPTAG 175
Query: 191 LDWKARADVVKLLKHLKKE--LTILVVSHDLKEMAALVDHSWRMDMGG 236
LD K R +++++ L KE LT ++V+H +++ A D M G
Sbjct: 176 LDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGT 223
|
Length = 290 |
| >gnl|CDD|224041 COG1116, TauB, ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 136 bits (345), Expect = 2e-39
Identities = 84/220 (38%), Positives = 112/220 (50%), Gaps = 28/220 (12%)
Query: 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGS 75
+ LE+ VS G +V L ++ S+ + F I G SG GK+TLL+L+AGL KPTSG
Sbjct: 2 ALLEIEGVSKSFGGVEV--LEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGE 59
Query: 76 INIRGYNNDGEPNNSPEPLPPEKVGIVFQ----FPERYFVADNV-LDEVIFGWPRQSGSI 130
+ + DG P P P +G VFQ P V DNV L + G +
Sbjct: 60 VLL-----DGRPVTGPGP----DIGYVFQEDALLPWLT-VLDNVALGLELRGKSKAEARE 109
Query: 131 QLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAG 190
+ KE L L VGL G DK PH LSGG ++R+A+A L P LL+LDEP
Sbjct: 110 RAKELLEL--------VGLAG-FEDKYPHQLSGGMRQRVAIARALATRPKLLLLDEPFGA 160
Query: 191 LDWKARADVVKLLKHLKKE--LTILVVSHDLKEMAALVDH 228
LD R ++ L L +E T+L+V+HD+ E L D
Sbjct: 161 LDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADR 200
|
Length = 248 |
| >gnl|CDD|213222 cd03255, ABC_MJ0796_LolCDE_FtsE, ATP-binding cassette domain of the transporters involved in export of lipoprotein and macrolide, and cell division protein | Back alignment and domain information |
|---|
Score = 134 bits (341), Expect = 3e-39
Identities = 75/223 (33%), Positives = 114/223 (51%), Gaps = 18/223 (8%)
Query: 18 LEVRDVS--YRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGS 75
+E++++S Y G +V L GVS S+ + F I G SGSGK+TLL +L GL +PTSG
Sbjct: 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGE 60
Query: 76 INIRGYNNDGEPNNSPEPLPPEKVGIVFQFP---ERYFVADNV-LDEVIFGWPRQSGSIQ 131
+ + G + +G VFQ +NV L ++ G P++ +
Sbjct: 61 VRVDGTDISKLSEKELAAFRRRHIGFVFQSFNLLPDLTALENVELPLLLAGVPKKERRER 120
Query: 132 LKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGL 191
+E L VGL G L+ P LSGG ++R+A+A L P +++ DEP L
Sbjct: 121 AEELLER--------VGL-GDRLNHYPSELSGGQQQRVAIARALANDPKIILADEPTGNL 171
Query: 192 DWKARADVVKLLKHLKKE--LTILVVSHDLKEMAALVDHSWRM 232
D + +V++LL+ L KE TI+VV+HD E+A D +
Sbjct: 172 DSETGKEVMELLRELNKEAGTTIVVVTHDP-ELAEYADRIIEL 213
|
This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of lipoproteins from the cytoplasmic membrane (LolCDE). They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyzes the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. Length = 218 |
| >gnl|CDD|213197 cd03230, ABC_DR_subfamily_A, ATP-binding cassette domain of the drug resistance transporter and related proteins, subfamily A | Back alignment and domain information |
|---|
Score = 132 bits (336), Expect = 6e-39
Identities = 67/213 (31%), Positives = 104/213 (48%), Gaps = 51/213 (23%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKS-FGLIFGRSGSGKTTLLQLLAGLSKPTSGSI 76
+EVR++S R L+ +S ++ + +GL+ G +G+GKTTL++++ GL KP SG I
Sbjct: 1 IEVRNLSKRYGKKTA--LDDISLTVEKGEIYGLL-GPNGAGKTTLIKIILGLLKPDSGEI 57
Query: 77 NIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYL 136
+ G+ ++G + + P Y ++ ++E L
Sbjct: 58 KV-----LGKDIKKEPEEVKRRIGYLPEEPSLY------------------ENLTVRENL 94
Query: 137 ALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKAR 196
LSGG K+RLALA L+ P+LLILDEP +GLD ++R
Sbjct: 95 -----------------------KLSGGMKQRLALAQALLHDPELLILDEPTSGLDPESR 131
Query: 197 ADVVKLLKHLKKE-LTILVVSHDLKEMAALVDH 228
+ +LL+ LKKE TIL+ SH L+E L D
Sbjct: 132 REFWELLRELKKEGKTILLSSHILEEAERLCDR 164
|
This family of ATP-binding proteins belongs to a multi-subunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryotic systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 173 |
| >gnl|CDD|213196 cd03229, ABC_Class3, ATP-binding cassette domain of the binding protein-dependent transport systems | Back alignment and domain information |
|---|
Score = 131 bits (331), Expect = 3e-38
Identities = 77/227 (33%), Positives = 106/227 (46%), Gaps = 59/227 (25%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
LE+++VS R V LN VS ++ + G SGSGK+TLL+ +AGL +P SGSI
Sbjct: 1 LELKNVSKRYGQKTV--LNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSIL 58
Query: 78 IRGYNNDGEPNNSPEPLPPE---KVGIVFQ----FPERYFVADNVLDEVIFGWPRQSGSI 130
I DGE E P ++G+VFQ FP VL+ + G
Sbjct: 59 I-----DGEDLTDLEDELPPLRRRIGMVFQDFALFPHL-----TVLENIALG-------- 100
Query: 131 QLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAG 190
LSGG ++R+ALA L PD+L+LDEP +
Sbjct: 101 ------------------------------LSGGQQQRVALARALAMDPDVLLLDEPTSA 130
Query: 191 LDWKARADVVKLLKHLKKEL--TILVVSHDLKEMAALVDHSWRMDMG 235
LD R +V LLK L+ +L T+++V+HDL E A L D + G
Sbjct: 131 LDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDG 177
|
This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 178 |
| >gnl|CDD|224046 COG1121, ZnuC, ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 7e-38
Identities = 67/214 (31%), Positives = 107/214 (50%), Gaps = 11/214 (5%)
Query: 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSI 76
+EV +++ V L +S S+ + + G +G+GK+TLL+ + GL KP+SG I
Sbjct: 4 MIEVENLTVSYGNRPV--LEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEI 61
Query: 77 NIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEV-IFGWPRQSGSIQLKEY 135
I G P+K + FP V D V + + ++ +L +
Sbjct: 62 KIFGKPVRKRRKRLRIGYVPQKSSVDRSFPIT------VKDVVLLGRYGKKGWFRRLNKK 115
Query: 136 LALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKA 195
+ A+ VG++ D+ LSGG K+R+ LA L Q PDLL+LDEP G+D
Sbjct: 116 DKEKVDEALERVGMEDL-RDRQIGELSGGQKQRVLLARALAQNPDLLLLDEPFTGVDVAG 174
Query: 196 RADVVKLLKHLKKE-LTILVVSHDLKEMAALVDH 228
+ ++ LLK L++E T+L+V+HDL + A D
Sbjct: 175 QKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDR 208
|
Length = 254 |
| >gnl|CDD|213195 cd03228, ABCC_MRP_Like, ATP-binding cassette domain of multidrug resistance protein-like transporters | Back alignment and domain information |
|---|
Score = 129 bits (328), Expect = 8e-38
Identities = 66/218 (30%), Positives = 101/218 (46%), Gaps = 48/218 (22%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
+E ++VS+ PG +L VS ++ I G SGSGK+TLL+LL L PTSG I
Sbjct: 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEIL 60
Query: 78 IRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLA 137
I G + + E L + + V Q P +F SG+I +E
Sbjct: 61 IDGVDLR---DLDLESL-RKNIAYVPQDP------------FLF-----SGTI--RE--- 94
Query: 138 LNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARA 197
N+ LSGG ++R+A+A L++ P +LILDE + LD + A
Sbjct: 95 -NI--------------------LSGGQRQRIAIARALLRDPPILILDEATSALDPETEA 133
Query: 198 DVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMG 235
+++ L+ L K T++V++H L D +D G
Sbjct: 134 LILEALRALAKGKTVIVIAHRL-STIRDADRIIVLDDG 170
|
The MRP (Multidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 171 |
| >gnl|CDD|224052 COG1127, Ttg2A, ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 131 bits (333), Expect = 1e-37
Identities = 72/220 (32%), Positives = 111/220 (50%), Gaps = 22/220 (10%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
+EVR V+ IL+GV +P I G SGSGK+TLL+L+ GL +P G I
Sbjct: 9 IEVRGVTKSFGDRV--ILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEIL 66
Query: 78 IRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLA 137
I G + + +++G++FQ F + V + V F L+E+
Sbjct: 67 IDGEDIPQLSEEELYEIR-KRMGVLFQQGA-LFSSLTVFENVAF---------PLREHTK 115
Query: 138 L--NLQRAI-----NWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAG 190
L +L R + VGL G + D P LSGG ++R+ALA + P+LL LDEP +G
Sbjct: 116 LPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALARAIALDPELLFLDEPTSG 175
Query: 191 LDWKARADVVKLLKHLKKEL--TILVVSHDLKEMAALVDH 228
LD + + +L++ L L T+++V+HDL + + D
Sbjct: 176 LDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADR 215
|
Length = 263 |
| >gnl|CDD|184195 PRK13635, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 132 bits (334), Expect = 1e-37
Identities = 77/215 (35%), Positives = 117/215 (54%), Gaps = 24/215 (11%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
+ V +S+R P L VSFS+ E + I G +GSGK+TL +LL GL P +G+I
Sbjct: 6 IRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTIT 65
Query: 78 IRGYNNDGEPNNSPEPLPPE-------KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSI 130
+ G L E +VG+VFQ P+ FV V D+V FG
Sbjct: 66 VGGM-----------VLSEETVWDVRRQVGMVFQNPDNQFVGATVQDDVAFGLENIGVP- 113
Query: 131 QLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAG 190
+E + + +A+ VG++ L+++PH LSGG K+R+A+A L PD++ILDE +
Sbjct: 114 --REEMVERVDQALRQVGME-DFLNREPHRLSGGQKQRVAIAGVLALQPDIIILDEATSM 170
Query: 191 LDWKARADVVKLLKHLKKELTILVVS--HDLKEMA 223
LD + R +V++ ++ LK++ I V+S HDL E A
Sbjct: 171 LDPRGRREVLETVRQLKEQKGITVLSITHDLDEAA 205
|
Length = 279 |
| >gnl|CDD|213228 cd03261, ABC_Org_Solvent_Resistant, ATP-binding cassette transport system involved in resistant to organic solvents | Back alignment and domain information |
|---|
Score = 129 bits (327), Expect = 7e-37
Identities = 77/222 (34%), Positives = 112/222 (50%), Gaps = 27/222 (12%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
+E+R ++ G + +L GV + I G SGSGK+TLL+L+ GL +P SG +
Sbjct: 1 IELRGLTKSF-GGRT-VLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVL 58
Query: 78 IRGYNNDGEPNNSPEPLPPE--KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEY 135
I G + G S L ++G++FQ F + V + V F L+E+
Sbjct: 59 IDGEDISG---LSEAELYRLRRRMGMLFQSGA-LFDSLTVFENVAFP---------LREH 105
Query: 136 LALNLQR-------AINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPL 188
L+ + + VGL G D P LSGG K+R+ALA L P+LL+ DEP
Sbjct: 106 TRLSEEEIREIVLEKLEAVGLRGA-EDLYPAELSGGMKKRVALARALALDPELLLYDEPT 164
Query: 189 AGLDWKARADVVKLLKHLKKEL--TILVVSHDLKEMAALVDH 228
AGLD A + L++ LKKEL T ++V+HDL A+ D
Sbjct: 165 AGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADR 206
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213193 cd03226, ABC_cobalt_CbiO_domain2, Second domain of the ATP-binding cassette component of cobalt transport system | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 1e-36
Identities = 65/209 (31%), Positives = 110/209 (52%), Gaps = 18/209 (8%)
Query: 19 EVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINI 78
+ ++S+ +IL+ +S L + G++G+GKTTL ++LAGL K +SGSI +
Sbjct: 1 RIENISFSYKKGT-EILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILL 59
Query: 79 RGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLAL 138
+G+P + E + +G V Q + D+V +E++ G + E
Sbjct: 60 -----NGKPIKAKERR--KSIGYVMQDVDYQLFTDSVREELLLGLKELDAGNEQAE---- 108
Query: 139 NLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARAD 198
+ + ++ L ++ P SLSGG K+RLA+A L+ DLLI DEP +GLD+K
Sbjct: 109 TVLKDLDLYALK----ERHPLSLSGGQKQRLAIAAALLSGKDLLIFDEPTSGLDYKNMER 164
Query: 199 VVKLLKHLKKE-LTILVVSHDLKEMAALV 226
V +L++ L + ++V++HD E A V
Sbjct: 165 VGELIRELAAQGKAVIVITHDY-EFLAKV 192
|
Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota. The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. Length = 205 |
| >gnl|CDD|213267 cd03300, ABC_PotA_N, ATP-binding cassette domain of the polyamine transporter | Back alignment and domain information |
|---|
Score = 126 bits (320), Expect = 6e-36
Identities = 81/218 (37%), Positives = 114/218 (52%), Gaps = 27/218 (12%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
+E+ +VS G L+GVS + E F + G SG GKTTLL+L+AG PTSG I
Sbjct: 1 IELENVSKFYGGFVA--LDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEIL 58
Query: 78 IRGYNNDGEPNNSPEPLPPEK--VGIVFQ----FPERYFVADNVLDEVIFGWPRQSGSIQ 131
+ DG+ LPP K V VFQ FP V + + FG +
Sbjct: 59 L-----DGKDIT---NLPPHKRPVNTVFQNYALFPHL-----TVFENIAFGLRLKKLP-- 103
Query: 132 LKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGL 191
K + + A++ V L+G + ++ P LSGG ++R+A+A LV P +L+LDEPL L
Sbjct: 104 -KAEIKERVAEALDLVQLEGYA-NRKPSQLSGGQQQRVAIARALVNEPKVLLLDEPLGAL 161
Query: 192 DWKARADVVKLLKHLKKEL--TILVVSHDLKEMAALVD 227
D K R D+ LK L+KEL T + V+HD +E + D
Sbjct: 162 DLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSD 199
|
PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D. PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 232 |
| >gnl|CDD|184208 PRK13649, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 127 bits (322), Expect = 8e-36
Identities = 74/203 (36%), Positives = 115/203 (56%), Gaps = 6/203 (2%)
Query: 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94
L V+ ++ + S+ G +GSGK+T++QLL GL PT GS+ + N
Sbjct: 23 LFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIKQ 82
Query: 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSG-SIQLKEYLALNLQRAINWVGLDGTS 153
+KVG+VFQFPE + VL +V FG P+ G S + E LA + + VG+ +
Sbjct: 83 IRKKVGLVFQFPESQLFEETVLKDVAFG-PQNFGVSQEEAEALA---REKLALVGISESL 138
Query: 154 LDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKE-LTI 212
+K+P LSGG RR+A+A L P +L+LDEP AGLD K R +++ L K L + +TI
Sbjct: 139 FEKNPFELSGGQMRRVAIAGILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTI 198
Query: 213 LVVSHDLKEMAALVDHSWRMDMG 235
++V+H + ++A D + ++ G
Sbjct: 199 VLVTHLMDDVANYADFVYVLEKG 221
|
Length = 280 |
| >gnl|CDD|213227 cd03260, ABC_PstB_phosphate_transporter, ATP-binding cassette domain of the phosphate transport system | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 2e-35
Identities = 71/226 (31%), Positives = 116/226 (51%), Gaps = 18/226 (7%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK-----PT 72
+E+RD++ L +S +P+ + G SG GK+TLL+LL L+ P
Sbjct: 1 IELRDLNVYY--GDKHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPD 58
Query: 73 SGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQ--FPERYFVADNVLDEVIFGWPRQSGSI 130
G + + G + + + L +VG+VFQ P + DNV +G R G I
Sbjct: 59 EGEVLLDG-KDIYDLDVDVLELR-RRVGMVFQKPNPFPGSIYDNVA----YG-LRLHG-I 110
Query: 131 QLKEYLALNLQRAINWVGLDGTSLDK-DPHSLSGGYKRRLALAIQLVQVPDLLILDEPLA 189
+LKE L ++ A+ L D+ LSGG ++RL LA L P++L+LDEP +
Sbjct: 111 KLKEELDERVEEALRKAALWDEVKDRLHALGLSGGQQQRLCLARALANEPEVLLLDEPTS 170
Query: 190 GLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMG 235
LD + A + +L+ LKKE TI++V+H++++ A + D + + G
Sbjct: 171 ALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNG 216
|
Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient. The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. PstA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). Length = 227 |
| >gnl|CDD|184207 PRK13648, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 125 bits (316), Expect = 6e-35
Identities = 71/223 (31%), Positives = 119/223 (53%), Gaps = 17/223 (7%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
+ ++VS++ L VSF++P+ + I G +GSGK+T+ +L+ G+ K SG I
Sbjct: 8 IVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIF 67
Query: 78 IRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLA 137
YNN +++ E L + +GIVFQ P+ FV V +V FG +
Sbjct: 68 ---YNNQAITDDNFEKLR-KHIGIVFQNPDNQFVGSIVKYDVAFGLENHAVPYD------ 117
Query: 138 LNLQRAINWVGLDGTSLDK---DPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWK 194
+ R ++ L++ +P++LSGG K+R+A+A L P ++ILDE + LD
Sbjct: 118 -EMHRRVSEALKQVDMLERADYEPNALSGGQKQRVAIAGVLALNPSVIILDEATSMLDPD 176
Query: 195 ARADVVKLLKHLK--KELTILVVSHDLKEMAALVDHSWRMDMG 235
AR +++ L++ +K +TI+ ++HDL E A DH M+ G
Sbjct: 177 ARQNLLDLVRKVKSEHNITIISITHDLSE-AMEADHVIVMNKG 218
|
Length = 269 |
| >gnl|CDD|213202 cd03235, ABC_Metallic_Cations, ATP-binding cassette domain of the metal-type transporters | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 3e-34
Identities = 81/215 (37%), Positives = 114/215 (53%), Gaps = 19/215 (8%)
Query: 19 EVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINI 78
EV D++ G +L VSF + F I G +G+GK+TLL+ + GL KPTSGSI +
Sbjct: 1 EVEDLTVSYGGHP--VLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRV 58
Query: 79 RGYNNDGEPNNSPEPLPPEKVGIVFQFPE--RYFVADNVLDEVIFGWPRQSGSIQL--KE 134
G + E ++G V Q R F V D V+ G G + K
Sbjct: 59 FGKPLEKERK---------RIGYVPQRRSIDRDFPIS-VRDVVLMGLYGHKGLFRRLSKA 108
Query: 135 YLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWK 194
A + A+ VGL + D+ LSGG ++R+ LA LVQ PDLL+LDEP AG+D K
Sbjct: 109 DKAK-VDEALERVGLSELA-DRQIGELSGGQQQRVLLARALVQDPDLLLLDEPFAGVDPK 166
Query: 195 ARADVVKLLKHLKKE-LTILVVSHDLKEMAALVDH 228
+ D+ +LL+ L++E +TILVV+HDL + D
Sbjct: 167 TQEDIYELLRELRREGMTILVVTHDLGLVLEYFDR 201
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. Length = 213 |
| >gnl|CDD|213230 cd03263, ABC_subfamily_A, ATP-binding cassette domain of the lipid transporters, subfamily A | Back alignment and domain information |
|---|
Score = 120 bits (304), Expect = 1e-33
Identities = 60/224 (26%), Positives = 108/224 (48%), Gaps = 36/224 (16%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKS-FGLIFGRSGSGKTTLLQLLAGLSKPTSGSI 76
L++R+++ ++ +S ++ + FGL+ G +G+GKTT L++L G +PTSG+
Sbjct: 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLL-GHNGAGKTTTLKMLTGELRPTSGTA 59
Query: 77 NIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDE--------VIFGWPRQSG 128
I GY+ + + +G QF + L + +
Sbjct: 60 YINGYSIRTDRK-----AARQSLGYCPQF--------DALFDELTVREHLRFYA------ 100
Query: 129 SIQLKEYLALNLQRAINWVGLDGTSL----DKDPHSLSGGYKRRLALAIQLVQVPDLLIL 184
+LK ++ + + L L +K +LSGG KR+L+LAI L+ P +L+L
Sbjct: 101 --RLKGLPKSEIKEEVELL-LRVLGLTDKANKRARTLSGGMKRKLSLAIALIGGPSVLLL 157
Query: 185 DEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDH 228
DEP +GLD +R + L+ ++K +I++ +H + E AL D
Sbjct: 158 DEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDR 201
|
The ABCA subfamily mediates the transport of a variety of lipid compounds. Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. Length = 220 |
| >gnl|CDD|184205 PRK13646, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 122 bits (308), Expect = 1e-33
Identities = 74/235 (31%), Positives = 123/235 (52%), Gaps = 23/235 (9%)
Query: 22 DVSY-RPPGT--QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINI 78
+VSY GT + ++ V+ + + I G++GSGK+TL+Q + L KPT+G++ +
Sbjct: 7 NVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTV 66
Query: 79 RGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGS--IQLKEY- 135
+ + +++G+VFQFPE D V E+IFG P+ ++K Y
Sbjct: 67 DDITITHKTKDKYIRPVRKRIGMVFQFPESQLFEDTVEREIIFG-PKNFKMNLDEVKNYA 125
Query: 136 ----LALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGL 191
+ L R + + + P +SGG R++A+ L PD+++LDEP AGL
Sbjct: 126 HRLLMDLGFSRDV---------MSQSPFQMSGGQMRKIAIVSILAMNPDIIVLDEPTAGL 176
Query: 192 DWKARADVVKLLKHLKKE--LTILVVSHDLKEMAALVDHSWRMDMGGFLVEQRIP 244
D +++ V++LLK L+ + TI++VSHD+ E+A D M G +V Q P
Sbjct: 177 DPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGS-IVSQTSP 230
|
Length = 286 |
| >gnl|CDD|226359 COG3839, MalK, ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 123 bits (311), Expect = 1e-33
Identities = 76/238 (31%), Positives = 118/238 (49%), Gaps = 34/238 (14%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
LE+++V +V L V+ + + F ++ G SG GK+TLL+++AGL +PTSG I
Sbjct: 4 LELKNVRKSFGSFEV--LKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEIL 61
Query: 78 IRGYNNDGEPNNSPEPLPPEK--VGIVFQFPERY---FVADNVLDEVIFGWPRQSGSIQL 132
I DG LPPEK + +VFQ Y V +N+ + + +
Sbjct: 62 I-----DGRDVTD---LPPEKRGIAMVFQNYALYPHMTVYENI------AFGLKLRGVPK 107
Query: 133 KEYLALNLQRAINWV----GLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPL 188
E + + + V GL+ L++ P LSGG ++R+ALA LV+ P + +LDEPL
Sbjct: 108 AE-----IDKRVKEVAKLLGLEH-LLNRKPLQLSGGQRQRVALARALVRKPKVFLLDEPL 161
Query: 189 AGLDWKARADVVKLLKHLKKEL--TILVVSHDLKEMAALVDHSWRMDMGGFLVEQRIP 244
+ LD K R + +K L + L T + V+HD E L D M+ G + + P
Sbjct: 162 SNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMN-DGRIQQVGTP 218
|
Length = 338 |
| >gnl|CDD|184199 PRK13639, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 121 bits (305), Expect = 2e-33
Identities = 76/208 (36%), Positives = 116/208 (55%), Gaps = 18/208 (8%)
Query: 18 LEVRDVSYR-PPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSI 76
LE RD+ Y P GT+ L G++F + + G +G+GK+TL G+ KPTSG +
Sbjct: 2 LETRDLKYSYPDGTEA--LKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEV 59
Query: 77 NIRG----YNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQL 132
I+G Y+ + VGIVFQ P+ A V ++V FG P G
Sbjct: 60 LIKGEPIKYDKKSLLEVR------KTVGIVFQNPDDQLFAPTVEEDVAFG-PLNLG--LS 110
Query: 133 KEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLD 192
KE + ++ A+ VG++G +K PH LSGG K+R+A+A L P++++LDEP +GLD
Sbjct: 111 KEEVEKRVKEALKAVGMEGFE-NKPPHHLSGGQKKRVAIAGILAMKPEIIVLDEPTSGLD 169
Query: 193 WKARADVVKLLKHLKKE-LTILVVSHDL 219
+ ++KLL L KE +TI++ +HD+
Sbjct: 170 PMGASQIMKLLYDLNKEGITIIISTHDV 197
|
Length = 275 |
| >gnl|CDD|223521 COG0444, DppD, ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 121 bits (307), Expect = 4e-33
Identities = 65/228 (28%), Positives = 107/228 (46%), Gaps = 23/228 (10%)
Query: 18 LEVRD--VSYRPPGTQVDILNGVSFSLPE-KSFGLIFGRSGSGKTTLLQLLAGLSKP--- 71
LEV++ VS+ V ++GVSF L + + G++ G SGSGK+ L + + GL
Sbjct: 2 LEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIV-GESGSGKSVLAKAIMGLLPKPNA 60
Query: 72 --TSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYF-----VADNVLDEVIFGWP 124
G I G + + +++ ++FQ P + D + EV+
Sbjct: 61 RIVGGEILFDGKDLLSLSEKELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIA-EVL---- 115
Query: 125 RQSGSIQLKEYLALNLQRAINWVGLDGTS--LDKDPHSLSGGYKRRLALAIQLVQVPDLL 182
R G K+ + VG+ L PH LSGG ++R+ +A+ L P LL
Sbjct: 116 RLHGKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMRQRVMIAMALALNPKLL 175
Query: 183 ILDEPLAGLDWKARADVVKLLKHLKKE--LTILVVSHDLKEMAALVDH 228
I DEP LD +A ++ LLK L++E +++++HDL +A + D
Sbjct: 176 IADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADR 223
|
Length = 316 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 124 bits (315), Expect = 5e-33
Identities = 83/237 (35%), Positives = 119/237 (50%), Gaps = 30/237 (12%)
Query: 18 LEVRDVS--YRPPGTQ-------VDILNGVSFSLPEKS-FGLIFGRSGSGKTTLLQLLAG 67
L VR++S Y V ++ VSF L E GL+ G SGSGK+TL ++LAG
Sbjct: 281 LSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLV-GESGSGKSTLARILAG 339
Query: 68 LSKPTSGSINIRGYNNDGEPNNSPEPLPPE--KVGIVFQFPE-----RYFVADNVLDEVI 120
L P+SGSI G + + + L ++ +VFQ P R V D + + +
Sbjct: 340 LLPPSSGSIIFDG----QDLDLTGGELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLR 395
Query: 121 FGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPD 180
+ + +A L+ VGL LD+ PH LSGG ++R+A+A L P
Sbjct: 396 IHGGGSGA--ERRARVAELLEL----VGLPPEFLDRYPHELSGGQRQRVAIARALALEPK 449
Query: 181 LLILDEPLAGLDWKARADVVKLLKHLKKE--LTILVVSHDLKEMAALVDHSWRMDMG 235
LLILDEP++ LD +A V+ LLK L++E LT L +SHDL + + D M G
Sbjct: 450 LLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDG 506
|
Length = 539 |
| >gnl|CDD|172200 PRK13652, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 7e-33
Identities = 75/232 (32%), Positives = 122/232 (52%), Gaps = 25/232 (10%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
+E RD+ Y G+ + LN ++F P S + G +G+GK+TL + G+ KPTSGS+
Sbjct: 4 IETRDLCYSYSGS-KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVL 62
Query: 78 IRGYNNDGEPNNSPEPLPPEK-------VGIVFQFPERYFVADNVLDEVIFGWPRQSGSI 130
IRG EP+ E VG+VFQ P+ + V ++ FG P G
Sbjct: 63 IRG-----------EPITKENIREVRKFVGLVFQNPDDQIFSPTVEQDIAFG-PINLGLD 110
Query: 131 QLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAG 190
+ E +A + A++ +GL+ D+ PH LSGG K+R+A+A + P +L+LDEP AG
Sbjct: 111 E--ETVAHRVSSALHMLGLEEL-RDRVPHHLSGGEKKRVAIAGVIAMEPQVLVLDEPTAG 167
Query: 191 LDWKARADVVKLLKHLKKE--LTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240
LD + +++ L L + +T++ +H L + + D+ + MD G +
Sbjct: 168 LDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAY 219
|
Length = 277 |
| >gnl|CDD|213186 cd03219, ABC_Mj1267_LivG_branched, ATP-binding cassette component of branched chain amino acids transport system | Back alignment and domain information |
|---|
Score = 118 bits (299), Expect = 1e-32
Identities = 76/240 (31%), Positives = 118/240 (49%), Gaps = 33/240 (13%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKS-FGLIFGRSGSGKTTLLQLLAGLSKPTSGSI 76
LEVR ++ R G L+ VSFS+ GLI G +G+GKTTL L++G +PTSGS+
Sbjct: 1 LEVRGLTKRFGGLVA--LDDVSFSVRPGEIHGLI-GPNGAGKTTLFNLISGFLRPTSGSV 57
Query: 77 NIRGYNNDGEPNNSPEPLPPEKV---GIV--FQFPERYF---VADNVL-------DEVIF 121
G + G LPP ++ GI FQ P + V +NV+ +
Sbjct: 58 LFDGEDITG--------LPPHEIARLGIGRTFQIPRLFPELTVLENVMVAAQARTGSGLL 109
Query: 122 GWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDL 181
+ + +E + VGL D+ LS G +RRL +A L P L
Sbjct: 110 LARARREEREARERAE----ELLERVGLAD-LADRPAGELSYGQQRRLEIARALATDPKL 164
Query: 182 LILDEPLAGLDWKARADVVKLLKHLKKE-LTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240
L+LDEP AGL+ + ++ +L++ L++ +T+L+V HD+ + +L D +D G + E
Sbjct: 165 LLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAE 224
|
The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine. MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). Length = 236 |
| >gnl|CDD|237452 PRK13632, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 117 bits (296), Expect = 4e-32
Identities = 74/234 (31%), Positives = 121/234 (51%), Gaps = 22/234 (9%)
Query: 19 EVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINI 78
+V +VS+ P ++ + L VSF + E + I G +GSGK+T+ ++L GL KP SG I I
Sbjct: 9 KVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKI 68
Query: 79 RGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFG-----WPRQSGSIQLK 133
G + +K+GI+FQ P+ F+ V D++ FG P + +
Sbjct: 69 DGI----TISKENLKEIRKKIGIIFQNPDNQFIGATVEDDIAFGLENKKVPPKKMKDIID 124
Query: 134 EYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDW 193
+ VG++ LDK+P +LSGG K+R+A+A L P+++I DE + LD
Sbjct: 125 DLAKK--------VGMEDY-LDKEPQNLSGGQKQRVAIASVLALNPEIIIFDESTSMLDP 175
Query: 194 KARADVVKLLKHLKKEL--TILVVSHDLKEMAALVDHSWRMDMGGFLVEQRIPV 245
K + ++ K++ L+K T++ ++HD+ E A L D G L+ Q P
Sbjct: 176 KGKREIKKIMVDLRKTRKKTLISITHDMDE-AILADKVIVFS-EGKLIAQGKPK 227
|
Length = 271 |
| >gnl|CDD|184210 PRK13651, PRK13651, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 5e-32
Identities = 70/231 (30%), Positives = 115/231 (49%), Gaps = 37/231 (16%)
Query: 18 LEVRDVSY---RPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSG 74
++V+++ + T++ L+ VS + + F I G++GSGKTT ++ L L P +G
Sbjct: 3 IKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTG 62
Query: 75 SINIRGYNNDGEPNNSPEPLPPE----------------------KVGIVFQFPERYFVA 112
+I + ++ + + +VG+VFQF E
Sbjct: 63 TIEWI-FKDE-KNKKKTKEKEKVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFE 120
Query: 113 DNVLDEVIFGWPRQSGSIQLKEYLALNLQRA---INWVGLDGTSLDKDPHSLSGGYKRRL 169
+ ++IFG P G + +E +RA I VGLD + L + P LSGG KRR+
Sbjct: 121 QTIEKDIIFG-PVSMG-VSKEE----AKKRAAKYIELVGLDESYLQRSPFELSGGQKRRV 174
Query: 170 ALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKE-LTILVVSHDL 219
ALA L PD L+ DEP AGLD + +++++ +L K+ TI++V+HDL
Sbjct: 175 ALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDL 225
|
Length = 305 |
| >gnl|CDD|131197 TIGR02142, modC_ABC, molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 118 bits (298), Expect = 1e-31
Identities = 75/209 (35%), Positives = 108/209 (51%), Gaps = 27/209 (12%)
Query: 38 VSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP---L 94
F+LP + IFGRSGSGKTTL++L+AGL++P G I + +G L
Sbjct: 16 ADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVL-----NGRTLFDSRKGIFL 70
Query: 95 PPEK--VGIVFQ----FPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVG 148
PPEK +G VFQ FP V N+ +G R ++ +R I +G
Sbjct: 71 PPEKRRIGYVFQEARLFPH-LSVRGNLR----YGMKRARP-----SERRISFERVIELLG 120
Query: 149 LDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK 208
+ G L + P LSGG K+R+A+ L+ P LL++DEPLA LD + +++ L+ L
Sbjct: 121 I-GHLLGRLPGRLSGGEKQRVAIGRALLSSPRLLLMDEPLAALDDPRKYEILPYLERLHA 179
Query: 209 ELTI--LVVSHDLKEMAALVDHSWRMDMG 235
E I L VSH L+E+ L D ++ G
Sbjct: 180 EFGIPILYVSHSLQEVLRLADRVVVLEDG 208
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter [Transport and binding proteins, Anions]. Length = 354 |
| >gnl|CDD|224048 COG1123, COG1123, ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Score = 120 bits (303), Expect = 2e-31
Identities = 71/221 (32%), Positives = 108/221 (48%), Gaps = 21/221 (9%)
Query: 18 LEVRD--VSYRPPGTQVDILNGVSFSL-PEKSFGLIFGRSGSGKTTLLQLLAGL----SK 70
LEV + V + G +V + VSF + P + G++ G SGSGK+TL L GL +
Sbjct: 6 LEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIV-GESGSGKSTLALALMGLLPEGGR 64
Query: 71 PTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFP----ERYFVADNVLDEVIFGWPRQ 126
TSG + + G + G L +++ ++FQ P + + E +
Sbjct: 65 ITSGEVILDGRDLLGLSEREMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREAL--RLHG 122
Query: 127 SGSIQLKEYLALNLQRAINWVGL-DGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILD 185
GS A+ L VGL D D+ PH LSGG ++R+ +A+ L P LLI D
Sbjct: 123 KGSRAEARKRAVELLEQ---VGLPDPERRDRYPHQLSGGMRQRVMIAMALALKPKLLIAD 179
Query: 186 EPLAGLDWKARADVVKLLKHLKKEL--TILVVSHDLKEMAA 224
EP LD +A ++ LLK L++EL +L ++HDL + A
Sbjct: 180 EPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDL-GVVA 219
|
Length = 539 |
| >gnl|CDD|224051 COG1126, GlnQ, ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 115 bits (290), Expect = 2e-31
Identities = 71/238 (29%), Positives = 117/238 (49%), Gaps = 31/238 (13%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
+E++++S +V L G+S S+ + +I G SGSGK+TLL+ L GL +P SGSI
Sbjct: 3 IEIKNLSKSFGDKEV--LKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSIT 60
Query: 78 IRGYNNDGEPNNSPEPLPPEKVGIVFQ----FPERYFVADNVLDEVIF------GWPRQS 127
+ G + + + KVG+VFQ FP VL+ V +
Sbjct: 61 VDGEDVGDKKD---ILKLRRKVGMVFQQFNLFPHL-----TVLENVTLAPVKVKKLSKAE 112
Query: 128 GSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEP 187
+ E L VGL D P LSGG ++R+A+A L P +++ DEP
Sbjct: 113 AREKALELLEK--------VGL-ADKADAYPAQLSGGQQQRVAIARALAMDPKVMLFDEP 163
Query: 188 LAGLDWKARADVVKLLKHLKKE-LTILVVSHDLKEMAALVDHSWRMDMGGFLVEQRIP 244
+ LD + +V+ ++K L +E +T+++V+H++ + D MD G ++E+ P
Sbjct: 164 TSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMD-QGKIIEEGPP 220
|
Length = 240 |
| >gnl|CDD|237451 PRK13631, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 117 bits (294), Expect = 2e-31
Identities = 71/224 (31%), Positives = 112/224 (50%), Gaps = 22/224 (9%)
Query: 31 QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRG-YNNDGEPNN 89
++ LN +S++ + I G SGSGK+TL+ GL K G+I + Y D + N+
Sbjct: 38 ELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIGDKKNNH 97
Query: 90 SPEPLPPEK-----------VGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLAL 138
P K V +VFQFPE D + +++FG + L +
Sbjct: 98 ELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFG------PVALGVKKSE 151
Query: 139 NLQRA---INWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKA 195
+ A +N +GLD + L++ P LSGG KRR+A+A L P++LI DEP AGLD K
Sbjct: 152 AKKLAKFYLNKMGLDDSYLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKG 211
Query: 196 RADVVKLLKHLKKE-LTILVVSHDLKEMAALVDHSWRMDMGGFL 238
++++L+ K T+ V++H ++ + + D MD G L
Sbjct: 212 EHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIVMDKGKIL 255
|
Length = 320 |
| >gnl|CDD|234033 TIGR02857, CydD, thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Score = 120 bits (302), Expect = 3e-31
Identities = 70/225 (31%), Positives = 106/225 (47%), Gaps = 27/225 (12%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
LE VS PG + L VSF++P + G SG+GK+TLL LL G PT GSI
Sbjct: 322 LEFSGVSVAYPGRRP-ALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIA 380
Query: 78 IRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLA 137
+ N ++ +++ V Q P + A + + + P S
Sbjct: 381 V----NGVPLADADADSWRDQIAWVPQHP--FLFAGTIAENIRLARPDAS---------D 425
Query: 138 LNLQRAINWVGLDG----------TSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEP 187
++ A+ GLD T + + LSGG +RLALA ++ LL+LDEP
Sbjct: 426 AEIREALERAGLDEFVAALPQGLDTPIGEGGAGLSGGQAQRLALARAFLRDAPLLLLDEP 485
Query: 188 LAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRM 232
A LD + A+V++ L+ L + T+L+V+H L +AAL D +
Sbjct: 486 TAHLDAETEAEVLEALRALAQGRTVLLVTHRL-ALAALADRIVVL 529
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD. Length = 529 |
| >gnl|CDD|224045 COG1120, FepC, ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 114 bits (289), Expect = 4e-31
Identities = 78/237 (32%), Positives = 123/237 (51%), Gaps = 26/237 (10%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
LEV ++S+ G IL+ +SFS+P+ I G +GSGK+TLL+ LAGL KP SG +
Sbjct: 3 LEVENLSFGYGGK--PILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVL 60
Query: 78 IRGYNNDGEPNNSPEPLPP----EKVGIVFQ---FPERYFVADNVLDEVIFG-WPRQSGS 129
+ DG+ S L P +K+ V Q P V + V+ G +P
Sbjct: 61 L-----DGKDIAS---LSPKELAKKLAYVPQSPSAPFGLT----VYELVLLGRYPHLGLF 108
Query: 130 IQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLA 189
+ + ++ A+ +GL+ + D+ LSGG ++R+ +A L Q +L+LDEP +
Sbjct: 109 GRPSKEDEEIVEEALELLGLEHLA-DRPVDELSGGERQRVLIARALAQETPILLLDEPTS 167
Query: 190 GLDWKARADVVKLLKHLKKE--LTILVVSHDLKEMAALVDHSWRMDMGGFLVEQRIP 244
LD + +V++LL+ L +E LT+++V HDL A DH + G +V Q P
Sbjct: 168 HLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLK-DGKIVAQGTP 223
|
Length = 258 |
| >gnl|CDD|184200 PRK13640, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 115 bits (289), Expect = 6e-31
Identities = 75/229 (32%), Positives = 123/229 (53%), Gaps = 16/229 (6%)
Query: 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGS 75
+ +E + VS+ P ++ LN +SFS+P S+ + G +GSGK+T+ +L+ GL P
Sbjct: 4 NIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNP 63
Query: 76 ---INIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWP-RQSGSIQ 131
I + G + EKVGIVFQ P+ FV V D+V FG R +
Sbjct: 64 NSKITVDGITLTAKTVWDIR----EKVGIVFQNPDNQFVGATVGDDVAFGLENRAVPRPE 119
Query: 132 LKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGL 191
+ + + + + VG+ +D +P +LSGG K+R+A+A L P ++ILDE + L
Sbjct: 120 MIKIV----RDVLADVGM-LDYIDSEPANLSGGQKQRVAIAGILAVEPKIIILDESTSML 174
Query: 192 DWKARADVVKLLKHLKKE--LTILVVSHDLKEMAALVDHSWRMDMGGFL 238
D + ++KL++ LKK+ LT++ ++HD+ E A + D +D G L
Sbjct: 175 DPAGKEQILKLIRKLKKKNNLTVISITHDIDE-ANMADQVLVLDDGKLL 222
|
Length = 282 |
| >gnl|CDD|213264 cd03297, ABC_ModC_molybdenum_transporter, ATP-binding cassette domain of the molybdenum transport system | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 8e-31
Identities = 80/202 (39%), Positives = 109/202 (53%), Gaps = 30/202 (14%)
Query: 38 VSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYN-NDGEPNNSPEPLPP 96
+ F L E+ G IFG SG+GK+TLL+ +AGL KP G+I + G D + LPP
Sbjct: 17 IDFDLNEEVTG-IFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKIN---LPP 72
Query: 97 E--KVGIVFQ----FPERYFVADNVLDEVIFGWPRQSGS---IQLKEYLALNLQRAINWV 147
+ K+G+VFQ FP NV + + FG R+ I + E L L +
Sbjct: 73 QQRKIGLVFQQYALFPHL-----NVRENLAFGLKRKRNREDRISVDELLDL--------L 119
Query: 148 GLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLK 207
GLD L++ P LSGG K+R+ALA L P+LL+LDEP + LD R ++ LK +K
Sbjct: 120 GLDHL-LNRYPAQLSGGEKQRVALARALAAQPELLLLDEPFSALDRALRLQLLPELKQIK 178
Query: 208 KELTI--LVVSHDLKEMAALVD 227
K L I + V+HDL E L D
Sbjct: 179 KNLNIPVIFVTHDLSEAEYLAD 200
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 214 |
| >gnl|CDD|227320 COG4987, CydC, ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 118 bits (299), Expect = 8e-31
Identities = 74/232 (31%), Positives = 109/232 (46%), Gaps = 23/232 (9%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
LE+R+VS+ PG Q L + +L + I GRSGSGK+TLLQLLAG P GSI
Sbjct: 337 LELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSIT 396
Query: 78 IRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGS-------- 129
+ N E + E E + ++ Q + + + D + P S
Sbjct: 397 L----NGVEIASLDEQALRETISVLTQRV--HLFSGTLRDNLRLANPDASDEELWAALQQ 450
Query: 130 IQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLA 189
+ L++ L W+G G LSGG +RRLALA L+ L +LDEP
Sbjct: 451 VGLEKLLESAPDGLNTWLGEGG-------RRLSGGERRRLALARALLHDAPLWLLDEPTE 503
Query: 190 GLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241
GLD V+ LL + T+L+V+H L+ + + D +D G ++E+
Sbjct: 504 GLDPITERQVLALLFEHAEGKTLLMVTHRLRGLERM-DRIIVLD-NGKIIEE 553
|
Length = 573 |
| >gnl|CDD|224043 COG1118, CysA, ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 115 bits (291), Expect = 1e-30
Identities = 68/229 (29%), Positives = 105/229 (45%), Gaps = 28/229 (12%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
+ + +V R L+ +S + + G SG+GK+TLL+++AGL P +G I
Sbjct: 3 IRINNVKKRFGAFGA--LDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIR 60
Query: 78 IRGYNNDGEPNNSPEPLPPE--KVGIVFQFPERYFVADNVLDEVIFG-------WPRQSG 128
+ +G L KVG VFQ + V D + FG
Sbjct: 61 L-----NGRVLFDVSNLAVRDRKVGFVFQHYALFPHM-TVADNIAFGLKVRKERPSEAEI 114
Query: 129 SIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPL 188
+++E L L V L+G + D+ P LSGG ++R+ALA L P +L+LDEP
Sbjct: 115 RARVEELLRL--------VQLEGLA-DRYPAQLSGGQRQRVALARALAVEPKVLLLDEPF 165
Query: 189 AGLDWKARADVVKLLKHLKKEL--TILVVSHDLKEMAALVDHSWRMDMG 235
LD K R ++ + L+ L L T + V+HD +E L D ++ G
Sbjct: 166 GALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQG 214
|
Length = 345 |
| >gnl|CDD|223488 COG0411, LivG, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 112 bits (283), Expect = 3e-30
Identities = 76/236 (32%), Positives = 113/236 (47%), Gaps = 32/236 (13%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
LEVR +S R G +N VS + + G +G+GKTTL L+ G KP+SG++
Sbjct: 5 LEVRGLSKRFGGLTA--VNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVI 62
Query: 78 IRGYNNDGEPNNSPEPLPPEKV---GIV--FQFPERYFVADNVLDEVIFG---WPRQSGS 129
RG + G LPP ++ GI FQ R F VL+ V G SG
Sbjct: 63 FRGRDITG--------LPPHRIARLGIARTFQIT-RLFPGLTVLENVAVGAHARLGLSGL 113
Query: 130 IQLKEY---LALNLQRA---INWVGLDGTSLDKDP--HSLSGGYKRRLALAIQLVQVPDL 181
+ +RA + +VGL D +LS G +RRL +A L P L
Sbjct: 114 LGRPRARKEEREARERARELLEFVGLGE---LADRPAGNLSYGQQRRLEIARALATQPKL 170
Query: 182 LILDEPLAGLDWKARADVVKLLKHLKKE--LTILVVSHDLKEMAALVDHSWRMDMG 235
L+LDEP AGL+ + ++ +L++ L+ +TIL++ HD+K + L D ++ G
Sbjct: 171 LLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYG 226
|
Length = 250 |
| >gnl|CDD|184196 PRK13636, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 3e-30
Identities = 74/231 (32%), Positives = 126/231 (54%), Gaps = 21/231 (9%)
Query: 18 LEVRDVSYR-PPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSI 76
L+V +++Y GT L G++ ++ + I G +G+GK+TL Q L G+ KP+SG I
Sbjct: 6 LKVEELNYNYSDGTHA--LKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRI 63
Query: 77 NIRG----YNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQL 132
G Y+ G E VG+VFQ P+ + +V +V FG + +++L
Sbjct: 64 LFDGKPIDYSRKGLMKLR------ESVGMVFQDPDNQLFSASVYQDVSFG----AVNLKL 113
Query: 133 -KEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGL 191
++ + + A+ G++ DK H LS G K+R+A+A LV P +L+LDEP AGL
Sbjct: 114 PEDEVRKRVDNALKRTGIEHLK-DKPTHCLSFGQKKRVAIAGVLVMEPKVLVLDEPTAGL 172
Query: 192 DWKARADVVKLLKHLKKEL--TILVVSHDLKEMAALVDHSWRMDMGGFLVE 240
D ++++KLL ++KEL TI++ +HD+ + D+ + M G +++
Sbjct: 173 DPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQ 223
|
Length = 283 |
| >gnl|CDD|227321 COG4988, CydD, ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 117 bits (295), Expect = 3e-30
Identities = 74/230 (32%), Positives = 115/230 (50%), Gaps = 15/230 (6%)
Query: 18 LEVRDVSYR-PPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSI 76
+ + ++S+R P G L+ ++ ++ + G SG+GK+TLL LL G PT G I
Sbjct: 321 ISLENLSFRYPDGKPA--LSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEI 378
Query: 77 NIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYL 136
+ G + + SPE +++ V Q P Y A + + ++ P S ++ L
Sbjct: 379 RVNGIDLR---DLSPEAWR-KQISWVSQNP--YLFAGTIRENILLARPDASDE-EIIAAL 431
Query: 137 AL-NLQRAINWV-GLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWK 194
L + GLD T + + LSGG +RLALA L+ LL+LDEP A LD +
Sbjct: 432 DQAGLLEFVPKPDGLD-TVIGEGGAGLSGGQAQRLALARALLSPASLLLLDEPTAHLDAE 490
Query: 195 ARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQRIP 244
+++ L+ L K+ T+LV++H L E AA D +D G LVEQ
Sbjct: 491 TEQIILQALQELAKQKTVLVITHRL-EDAADADRIVVLDNGR-LVEQGTH 538
|
Length = 559 |
| >gnl|CDD|213225 cd03258, ABC_MetN_methionine_transporter, ATP-binding cassette domain of methionine transporter | Back alignment and domain information |
|---|
Score = 111 bits (281), Expect = 4e-30
Identities = 75/236 (31%), Positives = 127/236 (53%), Gaps = 27/236 (11%)
Query: 18 LEVRDVS--YRPPGTQVDILNGVSFSLPEKS-FGLIFGRSGSGKTTLLQLLAGLSKPTSG 74
+E+++VS + G +V L VS S+P+ FG+I GRSG+GK+TL++ + GL +PTSG
Sbjct: 2 IELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGII-GRSGAGKSTLIRCINGLERPTSG 60
Query: 75 SINIRGYNNDGEPNNSPEPLPPE--KVGIVFQ----FPERYFVADNV-LDEVIFGWPRQS 127
S+ + G + L ++G++FQ R V +NV L I G P+
Sbjct: 61 SVLVDGTDLTLLSGKE---LRKARRRIGMIFQHFNLLSSRT-VFENVALPLEIAGVPKAE 116
Query: 128 GSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEP 187
++ E L L VGL+ + D P LSGG K+R+ +A L P +L+ DE
Sbjct: 117 IEERVLELLEL--------VGLEDKA-DAYPAQLSGGQKQRVGIARALANNPKVLLCDEA 167
Query: 188 LAGLDWKARADVVKLLKHLKKEL--TILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241
+ LD + ++ LL+ + +EL TI++++H+++ + + D M+ G +VE+
Sbjct: 168 TSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVME-KGEVVEE 222
|
MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport. Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 233 |
| >gnl|CDD|213262 cd03295, ABC_OpuCA_Osmoprotection, ATP-binding cassette domain of the osmoprotectant transporter | Back alignment and domain information |
|---|
Score = 111 bits (279), Expect = 7e-30
Identities = 79/236 (33%), Positives = 120/236 (50%), Gaps = 25/236 (10%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
+E +V+ R G + +N ++ + + F ++ G SGSGKTT ++++ L +PTSG I
Sbjct: 1 IEFENVTKRYGGGKK-AVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIF 59
Query: 78 IRGYNNDGEPNNSPEPLP-PEKVGIVFQ----FPERYFVADNV-LDEVIFGWPRQSGSIQ 131
I DGE +P+ K+G V Q FP V +N+ L + WP++ +
Sbjct: 60 I-----DGEDIREQDPVELRRKIGYVIQQIGLFPHMT-VEENIALVPKLLKWPKEKIRER 113
Query: 132 LKEYLALNLQRAINWVGLD-GTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAG 190
E LAL VGLD D+ PH LSGG ++R+ +A L P LL++DEP
Sbjct: 114 ADELLAL--------VGLDPAEFADRYPHELSGGQQQRVGVARALAADPPLLLMDEPFGA 165
Query: 191 LDWKARADVVKLLKHLKKEL--TILVVSHDLKEMAALVDHSWRMDMGGFLVEQRIP 244
LD R + + K L++EL TI+ V+HD+ E L D M G +V+ P
Sbjct: 166 LDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMK-NGEIVQVGTP 220
|
OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment. ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 242 |
| >gnl|CDD|131266 TIGR02211, LolD_lipo_ex, lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Score = 110 bits (277), Expect = 1e-29
Identities = 71/216 (32%), Positives = 104/216 (48%), Gaps = 10/216 (4%)
Query: 24 SYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNN 83
Y+ +L GVS S+ + I G SGSGK+TLL LL GL PTSG + G +
Sbjct: 10 RYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSL 69
Query: 84 DGEPNNSPEPLPPEKVGIVFQFPERYFVAD-NVLDEVIFGWPRQSGSIQLKEYLALNLQR 142
+N L +K+G ++QF + + D L+ V S++ + A +
Sbjct: 70 SKLSSNERAKLRNKKLGFIYQF--HHLLPDFTALENVAMPLLIGKKSVKEAKERAYEMLE 127
Query: 143 AINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKL 202
VGL ++ P LSGG ++R+A+A LV P L++ DEP LD + L
Sbjct: 128 K---VGL-EHRINHRPSELSGGERQRVAIARALVNQPSLVLADEPTGNLDNNNAKIIFDL 183
Query: 203 LKHLKKELTI--LVVSHDLKEMAALVDHSWRMDMGG 236
+ L +EL LVV+HDL E+A +D M G
Sbjct: 184 MLELNRELNTSFLVVTHDL-ELAKKLDRVLEMKDGQ 218
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina [Protein fate, Protein and peptide secretion and trafficking]. Length = 221 |
| >gnl|CDD|234152 TIGR03265, PhnT2, putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 113 bits (284), Expect = 1e-29
Identities = 78/232 (33%), Positives = 119/232 (51%), Gaps = 29/232 (12%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
L + ++ R L +S S+ + F + G SG GKTTLL+++AGL + T+G+I
Sbjct: 5 LSIDNIRKRFGAFT--ALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIY 62
Query: 78 IRGYNNDGEPNNSPEPLPPEK--VGIVFQ----FPERYFVADNVLDEVIFGWPRQSGSIQ 131
G LPP+K GIVFQ FP VADN+ +G +
Sbjct: 63 QGG--------RDITRLPPQKRDYGIVFQSYALFPN-LTVADNI----AYGLKNRGMG-- 107
Query: 132 LKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGL 191
+ +A + ++ VGL G S K P LSGG ++R+ALA L P LL+LDEPL+ L
Sbjct: 108 -RAEVAERVAELLDLVGLPG-SERKYPGQLSGGQQQRVALARALATSPGLLLLDEPLSAL 165
Query: 192 DWKARADVVKLLKHLKKEL--TILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241
D + R + ++ L++ L T ++V+HD +E ++ D M+ G +EQ
Sbjct: 166 DARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGV--IEQ 215
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely [Transport and binding proteins, Amino acids, peptides and amines]. Length = 353 |
| >gnl|CDD|184203 PRK13643, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 111 bits (278), Expect = 2e-29
Identities = 68/200 (34%), Positives = 110/200 (55%), Gaps = 6/200 (3%)
Query: 38 VSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97
+ + + S+ + G +GSGK+TLLQ L GL +PT G + + +
Sbjct: 25 IDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIKPVRK 84
Query: 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSG-SIQLKEYLALNLQRAINWVGLDGTSLDK 156
KVG+VFQFPE + VL +V FG P+ G + E +A + VGL +K
Sbjct: 85 KVGVVFQFPESQLFEETVLKDVAFG-PQNFGIPKEKAEKIA---AEKLEMVGLADEFWEK 140
Query: 157 DPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKE-LTILVV 215
P LSGG RR+A+A L P++L+LDEP AGLD KAR ++++L + + + T+++V
Sbjct: 141 SPFELSGGQMRRVAIAGILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLV 200
Query: 216 SHDLKEMAALVDHSWRMDMG 235
+H + ++A D+ + ++ G
Sbjct: 201 THLMDDVADYADYVYLLEKG 220
|
Length = 288 |
| >gnl|CDD|213268 cd03301, ABC_MalK_N, The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 2e-29
Identities = 67/222 (30%), Positives = 111/222 (50%), Gaps = 35/222 (15%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
+E+ +V+ R L+ ++ + + F ++ G SG GKTT L+++AGL +PTSG I
Sbjct: 1 VELENVTKRFGNVTA--LDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIY 58
Query: 78 IRGYNNDGEPNNSPEPLPPEK--VGIVFQ----FPERYFVADNVLDEVIFGWPRQSGSIQ 131
I G LPP+ + +VFQ +P V DN+ FG ++
Sbjct: 59 I-----GGRDVTD---LPPKDRDIAMVFQNYALYP-HMTVYDNI----AFG-------LK 98
Query: 132 LKEYLALNLQRAINWV----GLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEP 187
L++ + + V ++ LD+ P LSGG ++R+AL +V+ P + ++DEP
Sbjct: 99 LRKVPKDEIDERVREVAELLQIEHL-LDRKPKQLSGGQRQRVALGRAIVREPKVFLMDEP 157
Query: 188 LAGLDWKARADVVKLLKHLKKEL--TILVVSHDLKEMAALVD 227
L+ LD K R + LK L++ L T + V+HD E + D
Sbjct: 158 LSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMAD 199
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. Length = 213 |
| >gnl|CDD|226927 COG4555, NatA, ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 109 bits (274), Expect = 4e-29
Identities = 66/214 (30%), Positives = 104/214 (48%), Gaps = 16/214 (7%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
LEV D++ G++V + VSF E + G +G+GKTTLL+++A L P SG +
Sbjct: 2 LEVTDLTKSY-GSKVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVT 60
Query: 78 IRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVI--FGWPRQSGSIQLKEY 135
I G + +P+ K+G++F ER A E + F ++K
Sbjct: 61 IDGVDTVRDPSFVRR-----KIGVLFG--ERGLYARLTARENLKYFARLNGLSRKEIKAR 113
Query: 136 LALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKA 195
+A + L LD+ S G K+++A+A LV P +L+LDEP +GLD +
Sbjct: 114 IA----ELSKRLQLLEY-LDRRVGEFSTGMKQKVAIARALVHDPSILVLDEPTSGLDIRT 168
Query: 196 RADVVKLLKHLKKE-LTILVVSHDLKEMAALVDH 228
R +K LK E ++ SH ++E+ AL D
Sbjct: 169 RRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDR 202
|
Length = 245 |
| >gnl|CDD|213181 cd03214, ABC_Iron-Siderophores_B12_Hemin, ATP-binding component of iron-siderophores, vitamin B12 and hemin transporters and related proteins | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 4e-29
Identities = 64/221 (28%), Positives = 103/221 (46%), Gaps = 49/221 (22%)
Query: 19 EVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINI 78
EV ++S G +L+ +S S+ I G +G+GK+TLL+ LAGL KP+SG I +
Sbjct: 1 EVENLSVGYGGRT--VLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILL 58
Query: 79 RGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLAL 138
DG+ S + +L +A
Sbjct: 59 -----DGKDLAS--------------------------------LSPK----ELARKIAY 77
Query: 139 NLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARAD 198
Q A+ +GL + D+ + LSGG ++R+ LA L Q P +L+LDEP + LD + +
Sbjct: 78 VPQ-ALELLGLAHLA-DRPFNELSGGERQRVLLARALAQEPPILLLDEPTSHLDIAHQIE 135
Query: 199 VVKLLKHLKKE--LTILVVSHDLKEMAALV-DHSWRMDMGG 236
+++LL+ L +E T+++V HDL +AA D + G
Sbjct: 136 LLELLRRLARERGKTVVMVLHDL-NLAARYADRVILLKDGR 175
|
ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. Length = 180 |
| >gnl|CDD|226628 COG4148, ModC, ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 111 bits (280), Expect = 5e-29
Identities = 75/225 (33%), Positives = 111/225 (49%), Gaps = 35/225 (15%)
Query: 22 DVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGY 81
+ R +D +F+LP + +FG SGSGKT+L+ ++AGL++P G I + G
Sbjct: 5 NFRQRLGNFALDA----NFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGR 60
Query: 82 N-NDGEPNNSPEPLPPEK--VGIVFQ----FPERYFVADNVLDEVIFGWPRQSGSIQLKE 134
D E LPPEK +G VFQ FP Y V N+ + Q +
Sbjct: 61 VLVDAEKGIF---LPPEKRRIGYVFQDARLFPH-YTVRGNLRYGMWKSMRAQFDQL---- 112
Query: 135 YLALNLQRAINWVGLDGTS--LDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLD 192
V L G LD+ P +LSGG K+R+A+ L+ P+LL++DEPLA LD
Sbjct: 113 ------------VALLGIEHLLDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLD 160
Query: 193 WKARADVVKLLKHLKKE--LTILVVSHDLKEMAALVDHSWRMDMG 235
+ +++ L+ L+ E + IL VSH L E+ L D ++ G
Sbjct: 161 LPRKREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENG 205
|
Length = 352 |
| >gnl|CDD|226164 COG3638, COG3638, ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 1e-28
Identities = 64/220 (29%), Positives = 106/220 (48%), Gaps = 31/220 (14%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
+EV+++S PG L V+ + + I G SG+GK+TLL+ L GL PTSG I
Sbjct: 4 IEVKNLSKTYPG-GHQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEIL 62
Query: 78 IRGYNNDGEPNNSPEPLPPE---KVGIVFQFP---ERYFVADNVLD---------EVIFG 122
G + + +G++FQ R V +NVL +FG
Sbjct: 63 FNGV----QITKLKGKELRKLRRDIGMIFQQFNLVPRLSVLENVLLGRLGYTSTWRSLFG 118
Query: 123 WPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLL 182
+ + AL A+ VG+ + + +LSGG ++R+A+A LVQ P ++
Sbjct: 119 LFSKE-----DKAQAL---DALERVGILDKAYQR-ASTLSGGQQQRVAIARALVQQPKII 169
Query: 183 ILDEPLAGLDWKARADVVKLLKHLKKE--LTILVVSHDLK 220
+ DEP+A LD ++ V+ +LK + +E +T++V H +
Sbjct: 170 LADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVD 209
|
Length = 258 |
| >gnl|CDD|226643 COG4175, ProV, ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 110 bits (276), Expect = 3e-28
Identities = 69/193 (35%), Positives = 101/193 (52%), Gaps = 15/193 (7%)
Query: 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94
+N S + E +I G SGSGK+TL++LL L +PT G I + G + L
Sbjct: 44 VNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRGEILVDGKDIAKLSAAELREL 103
Query: 95 PPEKVGIVFQ----FPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLD 150
+K+ +VFQ P R VL+ V FG Q +E AL A+ VGL+
Sbjct: 104 RRKKISMVFQSFALLPHR-----TVLENVAFGLEVQGVPKAEREERAL---EALELVGLE 155
Query: 151 GTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKEL 210
G + DK P+ LSGG ++R+ LA L PD+L++DE + LD R ++ L L+ +L
Sbjct: 156 GYA-DKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKL 214
Query: 211 --TILVVSHDLKE 221
TI+ ++HDL E
Sbjct: 215 KKTIVFITHDLDE 227
|
Length = 386 |
| >gnl|CDD|224050 COG1125, OpuBA, ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 108 bits (272), Expect = 3e-28
Identities = 81/239 (33%), Positives = 122/239 (51%), Gaps = 32/239 (13%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
+E +VS R + ++ V+ ++ E F ++ G SGSGKTT L+++ L +PTSG I
Sbjct: 2 IEFENVSKRYGNKKA--VDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEIL 59
Query: 78 IRGYNNDGEPNNSPEPLPPEK----VGIVFQ----FPERYFVADNV-LDEVIFGWPRQSG 128
I DGE + L P + +G V Q FP VA+N+ + GW ++
Sbjct: 60 I-----DGEDISD---LDPVELRRKIGYVIQQIGLFPHLT-VAENIATVPKLLGWDKERI 110
Query: 129 SIQLKEYLALNLQRAINWVGLDGTS-LDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEP 187
+ E L L VGLD + D+ PH LSGG ++R+ +A L P +L++DEP
Sbjct: 111 KKRADELLDL--------VGLDPSEYADRYPHELSGGQQQRVGVARALAADPPILLMDEP 162
Query: 188 LAGLDWKARADVVKLLKHLKKEL--TILVVSHDLKEMAALVDHSWRMDMGGFLVEQRIP 244
LD R + + +K L+KEL TI+ V+HD+ E L D MD G +V+ P
Sbjct: 163 FGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMD-AGEIVQYDTP 220
|
Length = 309 |
| >gnl|CDD|213261 cd03294, ABC_Pro_Gly_Betaine, ATP-binding cassette domain of the osmoprotectant proline/glycine betaine uptake system | Back alignment and domain information |
|---|
Score = 107 bits (270), Expect = 3e-28
Identities = 70/197 (35%), Positives = 100/197 (50%), Gaps = 23/197 (11%)
Query: 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYN----NDGEPNNS 90
+N VS + E +I G SGSGK+TLL+ + L +PTSG + I G + + E
Sbjct: 40 VNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRE- 98
Query: 91 PEPLPPEKVGIVFQ----FPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINW 146
L +K+ +VFQ P R VL+ V FG Q +E A A+
Sbjct: 99 ---LRRKKISMVFQSFALLPHR-----TVLENVAFGLEVQGVPRAEREERAA---EALEL 147
Query: 147 VGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHL 206
VGL+G K P LSGG ++R+ LA L PD+L++DE + LD R ++ L L
Sbjct: 148 VGLEG-WEHKYPDELSGGMQQRVGLARALAVDPDILLMDEAFSALDPLIRREMQDELLRL 206
Query: 207 KKEL--TILVVSHDLKE 221
+ EL TI+ ++HDL E
Sbjct: 207 QAELQKTIVFITHDLDE 223
|
This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 269 |
| >gnl|CDD|131721 TIGR02673, FtsE, cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 3e-28
Identities = 75/217 (34%), Positives = 109/217 (50%), Gaps = 19/217 (8%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
+E +VS PG V L+ VS + + F + G SG+GKTTLL+LL G P+ G +
Sbjct: 2 IEFHNVSKAYPGG-VAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVR 60
Query: 78 IRGYNNDGEPNNSPEPLPPEKVGIVFQ----FPERYFVADNV-LDEVIFGWPRQSGSIQL 132
I G + + PL ++G+VFQ P+R V +NV L + G + IQ
Sbjct: 61 IAGEDVNRLRGRQL-PLLRRRIGVVFQDFRLLPDRT-VYENVALPLEVRGKKER--EIQR 116
Query: 133 KEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLD 192
+ + A+ VGL D P LSGG ++R+A+A +V P LL+ DEP LD
Sbjct: 117 R------VGAALRQVGL-EHKADAFPEQLSGGEQQRVAIARAIVNSPPLLLADEPTGNLD 169
Query: 193 WKARADVVKLLKHLKKE-LTILVVSHDLKEMAALVDH 228
++ LLK L K T++V +HDL + V H
Sbjct: 170 PDLSERILDLLKRLNKRGTTVIVATHDL-SLVDRVAH 205
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein [Cellular processes, Cell division]. Length = 214 |
| >gnl|CDD|226967 COG4608, AppF, ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 5e-28
Identities = 67/212 (31%), Positives = 97/212 (45%), Gaps = 56/212 (26%)
Query: 18 LEVRDVSYR-------PPGTQVDILNGVSFSLPE-KSFGLIFGRSGSGKTTLLQLLAGLS 69
LEV+++ V ++GVSFS+ E ++ GL+ G SG GK+TL +L+ GL
Sbjct: 5 LEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLV-GESGCGKSTLGRLILGLE 63
Query: 70 KPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGS 129
+PTSG I G D + E E+V
Sbjct: 64 EPTSGEILFEG--KDITKLSKEERR--ERV------------------------------ 89
Query: 130 IQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLA 189
E L VGL L + PH LSGG ++R+ +A L P L++ DEP++
Sbjct: 90 ---LELLEK--------VGLPEEFLYRYPHELSGGQRQRIGIARALALNPKLIVADEPVS 138
Query: 190 GLDWKARADVVKLLKHLKKE--LTILVVSHDL 219
LD +A ++ LLK L++E LT L +SHDL
Sbjct: 139 ALDVSVQAQILNLLKDLQEELGLTYLFISHDL 170
|
Length = 268 |
| >gnl|CDD|184209 PRK13650, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 107 bits (268), Expect = 6e-28
Identities = 68/216 (31%), Positives = 119/216 (55%), Gaps = 25/216 (11%)
Query: 18 LEVRDVSYRPPGTQVD-ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSI 76
+EV++++++ Q LN VSF + + + I G +GSGK+T ++L+ GL + SG I
Sbjct: 5 IEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQI 64
Query: 77 NIRGYNNDGEPNNSPEPLPPE-------KVGIVFQFPERYFVADNVLDEVIFGWPRQSGS 129
I G + L E K+G+VFQ P+ FV V D+V FG +
Sbjct: 65 IIDG-----------DLLTEENVWDIRHKIGMVFQNPDNQFVGATVEDDVAFGLENKG-- 111
Query: 130 IQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLA 189
I +E + + A+ VG+ +++P LSGG K+R+A+A + P ++ILDE +
Sbjct: 112 IPHEE-MKERVNEALELVGMQDFK-EREPARLSGGQKQRVAIAGAVAMRPKIIILDEATS 169
Query: 190 GLDWKARADVVKLLKHLKKE--LTILVVSHDLKEMA 223
LD + R +++K +K ++ + +T++ ++HDL E+A
Sbjct: 170 MLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEVA 205
|
Length = 279 |
| >gnl|CDD|130234 TIGR01166, cbiO, cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Score = 104 bits (261), Expect = 9e-28
Identities = 69/192 (35%), Positives = 111/192 (57%), Gaps = 15/192 (7%)
Query: 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEP-NNS 90
++L G++F+ + G +G+GK+TLL L GL +P SG++ I DGEP + S
Sbjct: 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLI-----DGEPLDYS 59
Query: 91 PEPLPP--EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKE-YLALNLQRAINWV 147
+ L ++VG+VFQ P+ A +V +V FG P G L E + ++ A+ V
Sbjct: 60 RKGLLERRQRVGLVFQDPDDQLFAADVDQDVAFG-PLNLG---LSEAEVERRVREALTAV 115
Query: 148 GLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLK 207
G G ++ H LSGG K+R+A+A + PD+L+LDEP AGLD R ++ +L+ L+
Sbjct: 116 GASGLR-ERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGLDPAGREQMLAILRRLR 174
Query: 208 KE-LTILVVSHD 218
E +T+++ +HD
Sbjct: 175 AEGMTVVISTHD 186
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux [Transport and binding proteins, Cations and iron carrying compounds]. Length = 190 |
| >gnl|CDD|224058 COG1135, AbcC, ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 106 bits (268), Expect = 2e-27
Identities = 74/234 (31%), Positives = 123/234 (52%), Gaps = 22/234 (9%)
Query: 18 LEVRDVS---YRPPGTQVDILNGVSFSLPEKS-FGLIFGRSGSGKTTLLQLLAGLSKPTS 73
+E+ +VS + V L+ VS +P+ FG+I G SG+GK+TLL+L+ L +PTS
Sbjct: 2 IELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGII-GYSGAGKSTLLRLINLLERPTS 60
Query: 74 GSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFP---ERYFVADNV-LDEVIFGWPRQSGS 129
GS+ + G + L +K+G++FQ V +NV + G P+
Sbjct: 61 GSVFVDGQDLTALSEAELRQL-RQKIGMIFQHFNLLSSRTVFENVAFPLELAGVPKAEIK 119
Query: 130 IQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLA 189
++ E L L VGL D+ P LSGG K+R+A+A L P +L+ DE +
Sbjct: 120 QRVAELLEL--------VGLSD-KADRYPAQLSGGQKQRVAIARALANNPKILLCDEATS 170
Query: 190 GLDWKARADVVKLLKHLKKEL--TILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241
LD + +++LLK + +EL TI++++H+++ + + D +D G LVE+
Sbjct: 171 ALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLD-QGRLVEE 223
|
Length = 339 |
| >gnl|CDD|237457 PRK13647, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 105 bits (264), Expect = 2e-27
Identities = 71/204 (34%), Positives = 113/204 (55%), Gaps = 12/204 (5%)
Query: 18 LEVRDVSYR-PPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSI 76
+EV D+ +R GT+ L G+S S+PE S + G +G+GK+TLL L G+ P G +
Sbjct: 5 IEVEDLHFRYKDGTKA--LKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRV 62
Query: 77 NIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYL 136
+ G E N E KVG+VFQ P+ + V D+V FG P G K+ +
Sbjct: 63 KVMGR----EVNAENEKWVRSKVGLVFQDPDDQVFSSTVWDDVAFG-PVNMG--LDKDEV 115
Query: 137 ALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKAR 196
++ A+ V + DK P+ LS G K+R+A+A L PD+++LDEP+A LD + +
Sbjct: 116 ERRVEEALKAVRMWDFR-DKPPYHLSYGQKKRVAIAGVLAMDPDVIVLDEPMAYLDPRGQ 174
Query: 197 ADVVKLLKHLKKE-LTILVVSHDL 219
++++L L + T++V +HD+
Sbjct: 175 ETLMEILDRLHNQGKTVIVATHDV 198
|
Length = 274 |
| >gnl|CDD|234041 TIGR02868, CydC, thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Score = 108 bits (271), Expect = 4e-27
Identities = 68/221 (30%), Positives = 101/221 (45%), Gaps = 22/221 (9%)
Query: 7 RAGGISCDYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLA 66
AG + LE+RD+S PG +L+GVS LP I G SGSGK+TLL LA
Sbjct: 324 AAGAVGLGKPTLELRDLSAGYPGAPP-VLDGVSLDLPPGERVAILGPSGSGKSTLLATLA 382
Query: 67 GLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVAD-NVLDEVIFGWPR 125
GL P G + + G + E V + + D V + + P
Sbjct: 383 GLLDPLQGEVTLDGVPVSSLDQD-------EVRRRVSVCAQDAHLFDTTVRENLRLARPD 435
Query: 126 QSGSIQLKEYLALNLQRA--INWV-----GLDGTSLDKDPHSLSGGYKRRLALAIQLVQV 178
+ E L L+R +W+ GLD T L + LSGG ++RLALA L+
Sbjct: 436 ATD-----EELWAALERVGLADWLRALPDGLD-TVLGEGGARLSGGERQRLALARALLAD 489
Query: 179 PDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDL 219
+L+LDEP LD + ++++ L T+++++H L
Sbjct: 490 APILLLDEPTEHLDAETADELLEDLLAALSGRTVVLITHHL 530
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. Length = 530 |
| >gnl|CDD|236523 PRK09452, potA, putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Score = 106 bits (266), Expect = 6e-27
Identities = 68/223 (30%), Positives = 110/223 (49%), Gaps = 37/223 (16%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
+E+R +S G + +++ + ++ F + G SG GKTT+L+L+AG P SG I
Sbjct: 15 VELRGISKSFDGKE--VISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIM 72
Query: 78 IRGYNNDGEPNNSPEPLPPEK--VGIVFQ----FPERYFVADNVLDEVIFGW-----PRQ 126
+ G + +P E V VFQ FP V + V FG P
Sbjct: 73 LDGQDITH--------VPAENRHVNTVFQSYALFPHM-----TVFENVAFGLRMQKTPAA 119
Query: 127 SGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDE 186
+ ++ E L + V L+ + + PH LSGG ++R+A+A +V P +L+LDE
Sbjct: 120 EITPRVMEALRM--------VQLEEFA-QRKPHQLSGGQQQRVAIARAVVNKPKVLLLDE 170
Query: 187 PLAGLDWKARADVVKLLKHLKKEL--TILVVSHDLKEMAALVD 227
L+ LD+K R + LK L+++L T + V+HD +E + D
Sbjct: 171 SLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSD 213
|
Length = 375 |
| >gnl|CDD|213235 cd03268, ABC_BcrA_bacitracin_resist, ATP-binding cassette domain of the bacitracin-resistance transporter | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 7e-27
Identities = 59/219 (26%), Positives = 103/219 (47%), Gaps = 32/219 (14%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKS-FGLIFGRSGSGKTTLLQLLAGLSKPTSGSI 76
L+ D++ +V L+ +S + + +G + G +G+GKTT ++++ GL KP SG I
Sbjct: 1 LKTNDLTKTYGKKRV--LDDISLHVKKGEIYGFL-GPNGAGKTTTMKIILGLIKPDSGEI 57
Query: 77 NIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYL 136
+ + E L ++G + + P Y P + L+
Sbjct: 58 TF----DGKSYQKNIEAL--RRIGALIEAPGFY--------------PNLTARENLRLLA 97
Query: 137 AL------NLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAG 190
L + ++ VGL ++ K S G K+RL +A+ L+ PDLLILDEP G
Sbjct: 98 RLLGIRKKRIDEVLDVVGLKDSA-KKKVKGFSLGMKQRLGIALALLGNPDLLILDEPTNG 156
Query: 191 LDWKARADVVKLLKHLKKE-LTILVVSHDLKEMAALVDH 228
LD ++ +L+ L+ + +T+L+ SH L E+ + D
Sbjct: 157 LDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADR 195
|
The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance. Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multi-enzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. Length = 208 |
| >gnl|CDD|213263 cd03296, ABC_CysA_sulfate_importer, ATP-binding cassette domain of the sulfate transporter | Back alignment and domain information |
|---|
Score = 103 bits (258), Expect = 8e-27
Identities = 80/229 (34%), Positives = 114/229 (49%), Gaps = 19/229 (8%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
+EVR+VS R L+ VS +P + G SGSGKTTLL+L+AGL +P SG+I
Sbjct: 3 IEVRNVSKRFGDFVA--LDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTIL 60
Query: 78 IRGYNNDGEPNNSPEPLPPEKVGIVFQFPERY--FVADNVLDEVIFGWP-RQSGSIQLKE 134
G + + P+ VG VFQ Y F V D V FG + +
Sbjct: 61 FGG------EDATDVPVQERNVGFVFQ---HYALFRHMTVFDNVAFGLRVKPRSERPPEA 111
Query: 135 YLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWK 194
+ + + V LD + D+ P LSGG ++R+ALA L P +L+LDEP LD K
Sbjct: 112 EIRAKVHELLKLVQLDWLA-DRYPAQLSGGQRQRVALARALAVEPKVLLLDEPFGALDAK 170
Query: 195 ARADVVKLLKHLKKEL--TILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241
R ++ + L+ L EL T + V+HD +E + D M+ G +EQ
Sbjct: 171 VRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGR--IEQ 217
|
Part of the ABC transporter complex cysAWTP involved in sulfate import. Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 239 |
| >gnl|CDD|132027 TIGR02982, heterocyst_DevA, ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 9e-27
Identities = 72/200 (36%), Positives = 103/200 (51%), Gaps = 33/200 (16%)
Query: 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93
+L ++ + ++ G SGSGKTTLL L+ GL GS+ + G G
Sbjct: 20 VLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKELVQ 79
Query: 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINW------- 146
L +G +FQ A N+L F RQ+ +Q+ AL LQ +++
Sbjct: 80 LR-RNIGYIFQ-------AHNLLG---FLTARQN--VQM----ALELQPNLSYQEARERA 122
Query: 147 ------VGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVV 200
VGL G LD PH+LSGG K+R+A+A LV P L++ DEP A LD K+ DVV
Sbjct: 123 RAMLEAVGL-GDHLDYYPHNLSGGQKQRVAIARALVHRPKLVLADEPTAALDSKSGRDVV 181
Query: 201 KLLKHLKKE--LTILVVSHD 218
+L++ L +E TIL+V+HD
Sbjct: 182 ELMQKLAREQGCTILIVTHD 201
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. Length = 220 |
| >gnl|CDD|130041 TIGR00968, 3a0106s01, sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 102 bits (257), Expect = 1e-26
Identities = 75/229 (32%), Positives = 116/229 (50%), Gaps = 23/229 (10%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
+E+ ++S R Q L+ V+ +P S + G SGSGK+TLL+++AGL +P SG I
Sbjct: 1 IEIANISKRFGSFQA--LDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIR 58
Query: 78 IRGYNNDGEPNNSPEPLPPEKVGIVFQFPERY--FVADNVLDEVIFGWP-RQSGSIQLKE 134
+ G + + K+G VFQ Y F V D + FG R+ ++K
Sbjct: 59 LNG------QDATRVHARDRKIGFVFQ---HYALFKHLTVRDNIAFGLEIRKHPKAKIKA 109
Query: 135 YLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWK 194
++ + V L+G D+ P+ LSGG ++R+ALA L P +L+LDEP LD K
Sbjct: 110 ----RVEELLELVQLEGLG-DRYPNQLSGGQRQRVALARALAVEPQVLLLDEPFGALDAK 164
Query: 195 ARADVVKLLKHLKKEL--TILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241
R ++ L+ L E+ T + V+HD +E + D M G +EQ
Sbjct: 165 VRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGK--IEQ 211
|
[Transport and binding proteins, Anions]. Length = 237 |
| >gnl|CDD|188353 TIGR03608, L_ocin_972_ABC, putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Score = 101 bits (255), Expect = 1e-26
Identities = 61/198 (30%), Positives = 102/198 (51%), Gaps = 12/198 (6%)
Query: 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93
IL+ ++ ++ + I G SGSGK+TLL ++ L K SG + + G +
Sbjct: 13 ILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGQETPPLNSKKASK 72
Query: 94 LPPEKVGIVFQFPERYFVADN--VLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG 151
EK+G +FQ + + +N V + + G + S + K + A+ VGL+
Sbjct: 73 FRREKLGYLFQ---NFALIENETVEENLDLGLKYKKLSKKEKREK---KKEALEKVGLNL 126
Query: 152 TSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKE-L 210
L + + LSGG ++R+ALA +++ P L++ DEP LD K R +V+ LL L E
Sbjct: 127 -KLKQKIYELSGGEQQRVALARAILKPPPLILADEPTGSLDPKNRDEVLDLLLELNDEGK 185
Query: 211 TILVVSHD--LKEMAALV 226
TI++V+HD + + A V
Sbjct: 186 TIIIVTHDPEVAKQADRV 203
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins [Cellular processes, Toxin production and resistance, Transport and binding proteins, Unknown substrate]. Length = 206 |
| >gnl|CDD|213266 cd03299, ABC_ModC_like, ATP-binding cassette domain similar to the molybdate transporter | Back alignment and domain information |
|---|
Score = 102 bits (256), Expect = 2e-26
Identities = 65/201 (32%), Positives = 102/201 (50%), Gaps = 25/201 (12%)
Query: 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94
L VS + + +I G +GSGK+ LL+ +AG KP SG I + G + L
Sbjct: 15 LKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKD--------ITNL 66
Query: 95 PPEK--VGIVFQ----FPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVG 148
PPEK + V Q FP V + +G ++ + E L + +
Sbjct: 67 PPEKRDISYVPQNYALFPHM-----TVYKNIAYGLKKRKVDKKEIERKVLEIAEMLGIDH 121
Query: 149 LDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK 208
L L++ P +LSGG ++R+A+A LV P +L+LDEP + LD + + + + LK ++K
Sbjct: 122 L----LNRKPETLSGGEQQRVAIARALVVNPKILLLDEPFSALDVRTKEKLREELKKIRK 177
Query: 209 E--LTILVVSHDLKEMAALVD 227
E +T+L V+HD +E AL D
Sbjct: 178 EFGVTVLHVTHDFEEAWALAD 198
|
Archaeal protein closely related to ModC. ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 235 |
| >gnl|CDD|213259 cd03292, ABC_FtsE_transporter, ATP-binding cassette domain of the cell division transporter | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 2e-26
Identities = 64/207 (30%), Positives = 101/207 (48%), Gaps = 18/207 (8%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
+E +V+ P L+G++ S+ F + G SG+GK+TLL+L+ PTSG+I
Sbjct: 1 IEFINVTKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIR 59
Query: 78 IRGYNNDGEPNNSPEPLPPEKVGIVFQ----FPERYFVADNV-LDEVIFGWPRQSGSIQL 132
+ G + + P K+G+VFQ P+R V +NV + G P + ++
Sbjct: 60 VNGQDVSDLRGRAI-PYLRRKIGVVFQDFRLLPDRN-VYENVAFALEVTGVPPREIRKRV 117
Query: 133 KEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLD 192
L L VGL P LSGG ++R+A+A +V P +LI DEP LD
Sbjct: 118 PAALEL--------VGLSHKH-RALPAELSGGEQQRVAIARAIVNSPTILIADEPTGNLD 168
Query: 193 WKARADVVKLLKHLKKE-LTILVVSHD 218
+++ LLK + K T++V +H
Sbjct: 169 PDTTWEIMNLLKKINKAGTTVVVATHA 195
|
FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane. The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. Length = 214 |
| >gnl|CDD|213229 cd03262, ABC_HisP_GlnQ, ATP-binding cassette domain of the histidine and glutamine transporters | Back alignment and domain information |
|---|
Score = 101 bits (254), Expect = 2e-26
Identities = 69/226 (30%), Positives = 116/226 (51%), Gaps = 23/226 (10%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
+E++++ V L G+ ++ + +I G SGSGK+TLL+ + L +P SG+I
Sbjct: 1 IEIKNLHKSFGDFHV--LKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTII 58
Query: 78 IRGYNNDGEPNNSPEPLPPEKVGIVFQ----FPERYFVADNVLDEVIFGWPRQSGSIQLK 133
I G + N E +KVG+VFQ FP VL+ + P + +
Sbjct: 59 IDGLKLTDDKKNINELR--QKVGMVFQQFNLFPHL-----TVLENITLA-PIKVKGMSKA 110
Query: 134 EYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDW 193
E L+ + VGL + D P LSGG ++R+A+A L P +++ DEP + LD
Sbjct: 111 EAEERALE-LLEKVGLADKA-DAYPAQLSGGQQQRVAIARALAMNPKVMLFDEPTSALDP 168
Query: 194 KARADVVKLLKHLKKE-LTILVVSHDL---KEMAALVDHSWRMDMG 235
+ +V+ ++K L +E +T++VV+H++ +E+A D MD G
Sbjct: 169 ELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVA---DRVIFMDDG 211
|
HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, respectively. Histidine permease is a multi-subunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryotic extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQMP system of S. typhimurium, where HisJ is the extracellular solute binding proteins and HisP is the ABC protein. Length = 213 |
| >gnl|CDD|225183 COG2274, SunT, ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 106 bits (267), Expect = 3e-26
Identities = 73/244 (29%), Positives = 110/244 (45%), Gaps = 45/244 (18%)
Query: 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSI 76
+E +VS+R +L +S +P I GRSGSGK+TLL+LL GL KP G I
Sbjct: 471 EIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRI 530
Query: 77 NIRGYN-NDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEY 135
+ G + ND + + +VG V Q D L SGSI+ E
Sbjct: 531 LLDGVDLNDIDLASL-----RRQVGYVLQ--------DPFL---------FSGSIR--EN 566
Query: 136 LALNLQ--------RAINWVGLDG----------TSLDKDPHSLSGGYKRRLALAIQLVQ 177
+AL A G T + + +LSGG ++RLALA L+
Sbjct: 567 IALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTPVGEGGANLSGGQRQRLALARALLS 626
Query: 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGF 237
P +L+LDE + LD + A +++ L + + T+++++H L D +D G
Sbjct: 627 KPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRL-STIRSADRIIVLD-QGK 684
Query: 238 LVEQ 241
+VEQ
Sbjct: 685 IVEQ 688
|
Length = 709 |
| >gnl|CDD|224055 COG1132, MdlB, ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 105 bits (265), Expect = 3e-26
Identities = 75/229 (32%), Positives = 118/229 (51%), Gaps = 18/229 (7%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
+E +VS+ PG + +L +SFS+ I G SGSGK+TL++LL L PTSG I
Sbjct: 329 IEFENVSFSYPGKKP-VLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEIL 387
Query: 78 IRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLA 137
I G + +S +++GIV Q P + + + + G P + +++E A
Sbjct: 388 IDGIDIRDISLDSL----RKRIGIVSQDP--LLFSGTIRENIALGRPDAT-DEEIEE--A 438
Query: 138 LNLQRAINWV-----GLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLD 192
L L A ++ G D T + + +LSGG ++RLA+A L++ P +LILDE + LD
Sbjct: 439 LKLANAHEFIANLPDGYD-TIVGERGVNLSGGQRQRLAIARALLRNPPILILDEATSALD 497
Query: 193 WKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241
+ A + LK L K T L+++H L D +D G +VE+
Sbjct: 498 TETEALIQDALKKLLKGRTTLIIAHRLS-TIKNADRIIVLD-NGRIVER 544
|
Length = 567 |
| >gnl|CDD|213231 cd03264, ABC_drug_resistance_like, ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 5e-26
Identities = 64/213 (30%), Positives = 111/213 (52%), Gaps = 19/213 (8%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
L++ +++ R + L+GVS +L +GL+ G +G+GKTTL+++LA L+ P+SG+I
Sbjct: 1 LQLENLTKRYGKKRA--LDGVSLTLGPGMYGLL-GPNGAGKTTLMRILATLTPPSSGTIR 57
Query: 78 IRGYNNDGEPNNSPEPLPPEKVGIV---FQFPERYFVADNVLDEVIFGWPRQSGSIQLKE 134
I + + P+ L ++G + F F LD W + S ++K
Sbjct: 58 I----DGQDVLKQPQKLR-RRIGYLPQEFGVYPN-FTVREFLD--YIAWLKGIPSKEVKA 109
Query: 135 YLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWK 194
+ + V L G K SLSGG +RR+ +A LV P +LI+DEP AGLD +
Sbjct: 110 RV----DEVLELVNL-GDRAKKKIGSLSGGMRRRVGIAQALVGDPSILIVDEPTAGLDPE 164
Query: 195 ARADVVKLLKHLKKELTILVVSHDLKEMAALVD 227
R LL L ++ +++ +H ++++ +L +
Sbjct: 165 ERIRFRNLLSELGEDRIVILSTHIVEDVESLCN 197
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|225438 COG2884, FtsE, Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 6e-26
Identities = 62/211 (29%), Positives = 106/211 (50%), Gaps = 16/211 (7%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
+ +VS PG + L VSF +P+ F + G SG+GK+TLL+L+ G +PT G I
Sbjct: 2 IRFENVSKAYPGGRE-ALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKIL 60
Query: 78 IRGYNNDGEPNNSPEPLPPEKVGIVFQ---FPERYFVADNV-LDEVIFGWPRQSGSIQLK 133
+ G++ P ++G+VFQ V +NV L + G P + ++
Sbjct: 61 VNGHDLSRLKGREI-PFLRRQIGVVFQDFRLLPDRTVYENVALPLRVIGKPPREIRRRVS 119
Query: 134 EYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDW 193
E ++ VGL + P LSGG ++R+A+A +V P +L+ DEP LD
Sbjct: 120 E--------VLDLVGLKHKARA-LPSQLSGGEQQRVAIARAIVNQPAVLLADEPTGNLDP 170
Query: 194 KARADVVKLLKHLKKE-LTILVVSHDLKEMA 223
++++L + + + T+L+ +HDL+ +
Sbjct: 171 DLSWEIMRLFEEINRLGTTVLMATHDLELVN 201
|
Length = 223 |
| >gnl|CDD|213232 cd03265, ABC_DrrA, Daunorubicin/doxorubicin resistance ATP-binding protein | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 8e-26
Identities = 71/212 (33%), Positives = 111/212 (52%), Gaps = 30/212 (14%)
Query: 35 LNGVSFSLPEKSFGLIF---GRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSP 91
+ GVSF + G IF G +G+GKTT +++L L KPTSG + G++ EP
Sbjct: 16 VRGVSFRVRR---GEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREPREVR 72
Query: 92 EPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEY------LALNLQRAIN 145
++GIVFQ D +D+ + GW ++ I + Y + ++
Sbjct: 73 R-----RIGIVFQ--------DLSVDDELTGW--ENLYIHARLYGVPGAERRERIDELLD 117
Query: 146 WVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKH 205
+VGL + D+ + SGG +RRL +A LV P++L LDEP GLD + RA V + ++
Sbjct: 118 FVGL-LEAADRLVKTYSGGMRRRLEIARSLVHRPEVLFLDEPTIGLDPQTRAHVWEYIEK 176
Query: 206 LKKE--LTILVVSHDLKEMAALVDHSWRMDMG 235
LK+E +TIL+ +H ++E L D +D G
Sbjct: 177 LKEEFGMTILLTTHYMEEAEQLCDRVAIIDHG 208
|
DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin. In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 220 |
| >gnl|CDD|226360 COG3840, ThiQ, ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 100 bits (250), Expect = 1e-25
Identities = 70/215 (32%), Positives = 104/215 (48%), Gaps = 26/215 (12%)
Query: 35 LNGVSFSLPEKSFGL-----------IFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNN 83
L+ V FS I G SG+GK+TLL L+AG P SG I I G ++
Sbjct: 4 LDDVRFSYGHLPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDH 63
Query: 84 DGEPNNSPEPLPPEK-VGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQR 142
P P E+ V ++FQ F V + G S ++L ++
Sbjct: 64 TASP-------PAERPVSMLFQ-ENNLFAHLTVAQNIGLG---LSPGLKLNAEQREKVEA 112
Query: 143 AINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKL 202
A VGL G L + P LSGG ++R+ALA LV+ +L+LDEP + LD RA+++ L
Sbjct: 113 AAAQVGLAGF-LKRLPGELSGGQRQRVALARCLVREQPILLLDEPFSALDPALRAEMLAL 171
Query: 203 LKHLKKE--LTILVVSHDLKEMAALVDHSWRMDMG 235
+ L E +T+L+V+H ++ A + D +D G
Sbjct: 172 VSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNG 206
|
Length = 231 |
| >gnl|CDD|182993 PRK11144, modC, molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 101 bits (255), Expect = 2e-25
Identities = 72/207 (34%), Positives = 112/207 (54%), Gaps = 27/207 (13%)
Query: 38 VSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYN-NDGEPNNSPEPLPP 96
V+ +LP + IFGRSG+GKT+L+ ++GL++P G I + G D E LPP
Sbjct: 17 VNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGIC---LPP 73
Query: 97 EK--VGIVFQ----FPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLD 150
EK +G VFQ FP Y V N+ +G + + + + + +G++
Sbjct: 74 EKRRIGYVFQDARLFPH-YKVRGNLR----YG---------MAKSMVAQFDKIVALLGIE 119
Query: 151 GTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKEL 210
LD+ P SLSGG K+R+A+ L+ P+LL++DEPLA LD + +++ L+ L +E+
Sbjct: 120 -PLLDRYPGSLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPRKRELLPYLERLAREI 178
Query: 211 T--ILVVSHDLKEMAALVDHSWRMDMG 235
IL VSH L E+ L D ++ G
Sbjct: 179 NIPILYVSHSLDEILRLADRVVVLEQG 205
|
Length = 352 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 103 bits (259), Expect = 2e-25
Identities = 81/251 (32%), Positives = 121/251 (48%), Gaps = 44/251 (17%)
Query: 17 CLEVRDVS---------YRPPGTQVDILNGVSFSLPE-KSFGLIFGRSGSGKTTLLQLLA 66
LEV D+ R + ++G+S +L ++ GL+ G SGSGK+TL L
Sbjct: 276 LLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLV-GESGSGKSTLGLALL 334
Query: 67 GLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGW--P 124
L P+ G I G + DG PL ++ +VFQ P +G P
Sbjct: 335 RLI-PSQGEIRFDGQDIDGLSRKEMRPLR-RRMQVVFQDP--------------YGSLSP 378
Query: 125 RQS-GSI--------QLKEYLALNLQRAI---NWVGLDGTSLDKDPHSLSGGYKRRLALA 172
R + G I + K A QR I VGLD + ++ PH SGG ++R+A+A
Sbjct: 379 RMTVGQIIEEGLRVHEPKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSGGQRQRIAIA 438
Query: 173 IQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKE--LTILVVSHDLKEMAALVDHSW 230
L+ P+L++LDEP + LD +A V+ LL+ L+++ L+ L +SHDL + AL
Sbjct: 439 RALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVI 498
Query: 231 RMDMGGFLVEQ 241
M G +VEQ
Sbjct: 499 VMR-DGKIVEQ 508
|
Length = 534 |
| >gnl|CDD|226970 COG4619, COG4619, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 98.8 bits (246), Expect = 3e-25
Identities = 65/219 (29%), Positives = 104/219 (47%), Gaps = 19/219 (8%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
LE++ V Y + ILN +S S+ F I G SG GK+TLL+++A L PTSG++
Sbjct: 4 LELKQVGYLAGDAK--ILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLL 61
Query: 78 IRGYNNDGEPNN--SPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEY 135
G E + PE ++V Q P D V D +IF W ++
Sbjct: 62 FEG-----EDVSTLKPEAYR-QQVSYCAQTPA--LFGDTVEDNLIFPWQIRNRRPDRAAA 113
Query: 136 LALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKA 195
L L L R L + L K+ LSGG K+R+AL L +P +L+LDE + LD
Sbjct: 114 LDL-LAR----FALPDSILTKNITELSGGEKQRIALIRNLQFMPKILLLDEITSALDESN 168
Query: 196 RADVVKLLKHL--KKELTILVVSHDLKEMAALVDHSWRM 232
+ ++ +++ ++ + +L ++HD + D +
Sbjct: 169 KRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITL 207
|
Length = 223 |
| >gnl|CDD|182331 PRK10247, PRK10247, putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Score = 97.9 bits (244), Expect = 6e-25
Identities = 70/212 (33%), Positives = 111/212 (52%), Gaps = 23/212 (10%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
L++++V Y + ILN +SFSL F LI G SG GK+TLL+++A L PTSG++
Sbjct: 8 LQLQNVGYLAGDAK--ILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLL 65
Query: 78 IRGYNNDGEPNNSPEPLPPE----KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLK 133
+GE ++ L PE +V Q P + D V D +IF W ++
Sbjct: 66 F-----EGEDIST---LKPEIYRQQVSYCAQTPTLF--GDTVYDNLIFPWQIRNQQPDPA 115
Query: 134 EYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDW 193
+L +L+R L T L K+ LSGG K+R++L L +P +L+LDE + LD
Sbjct: 116 IFLD-DLER----FALPDTILTKNIAELSGGEKQRISLIRNLQFMPKVLLLDEITSALDE 170
Query: 194 KARADVVKLLKHLKKE--LTILVVSHDLKEMA 223
+ +V +++ +E + +L V+HD E+
Sbjct: 171 SNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN 202
|
Length = 225 |
| >gnl|CDD|236898 PRK11308, dppF, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 99.7 bits (249), Expect = 9e-25
Identities = 72/224 (32%), Positives = 117/224 (52%), Gaps = 33/224 (14%)
Query: 19 EVRDVSYRPPGTQVDILNGVSFSLPEKSFGL-IFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
V+ ++P V L+GVSF+L E+ L + G SG GK+TL +LL + PT G +
Sbjct: 16 PVKRGLFKPERL-VKALDGVSFTL-ERGKTLAVVGESGCGKSTLARLLTMIETPTGGELY 73
Query: 78 IRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLA 137
+G + + + L +K+ IVFQ P + + N PR+ L+E L
Sbjct: 74 YQGQDLLK-ADPEAQKLLRQKIQIVFQNP---YGSLN---------PRKKVGQILEEPLL 120
Query: 138 LN--LQRA---------INWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDE 186
+N L A + VGL D+ PH SGG ++R+A+A L+ PD+++ DE
Sbjct: 121 INTSLSAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQRQRIAIARALMLDPDVVVADE 180
Query: 187 PLAGLDWKARADVVKLLKHLKKE--LTILVVSHDLKEMAALVDH 228
P++ LD +A V+ L+ L++E L+ + +SHDL ++V+H
Sbjct: 181 PVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDL----SVVEH 220
|
Length = 327 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 100 bits (251), Expect = 2e-24
Identities = 63/226 (27%), Positives = 97/226 (42%), Gaps = 45/226 (19%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKS-FGLIFGRSGSGKTTLLQLLAGLSKPTSGSI 76
+ + ++S +L VS +L GL+ GR+G+GK+TLL++LAG +P SG +
Sbjct: 4 ITLENLSLAYGDRP--LLENVSLTLNPGERIGLV-GRNGAGKSTLLKILAGELEPDSGEV 60
Query: 77 NIRGYNNDGEPNNSPEPLPPEKVGIVFQ---FPERYFVADNVLDEVIFGWPRQS------ 127
+VG + Q V D V++ +
Sbjct: 61 TR---------------PKGLRVGYLSQEPPLDPEKTVLDYVIEGFGELRELLAELEEAY 105
Query: 128 -----GSIQLKEYLALNLQRAINW----------VGLDGTSLDKDPHSLSGGYKRRLALA 172
+L L L+ W +GL D+ SLSGG++RR+ALA
Sbjct: 106 ALLADPDDELLAELEALLEELDGWTLEARAEEALLGLGFPDEDRPVSSLSGGWRRRVALA 165
Query: 173 IQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHD 218
L++ PDLL+LDEP LD ++ + LK T++VVSHD
Sbjct: 166 RALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYPG--TVIVVSHD 209
|
Length = 530 |
| >gnl|CDD|213213 cd03246, ABCC_Protease_Secretion, ATP-binding cassette domain of PrtD, subfamily C | Back alignment and domain information |
|---|
Score = 95.0 bits (237), Expect = 3e-24
Identities = 69/213 (32%), Positives = 97/213 (45%), Gaps = 53/213 (24%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
LEV +VS+R PG + +L VSFS+ I G SGSGK+TL +L+ GL +PTSG +
Sbjct: 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVR 60
Query: 78 IRGYNNDGEPNNS--PEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEY 135
+ DG + P L VG + Q D+ +F SGSI
Sbjct: 61 L-----DGADISQWDPNELGD-HVGYLPQ------------DDELF-----SGSI----- 92
Query: 136 LALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKA 195
A N+ LSGG ++RL LA L P +L+LDEP + LD +
Sbjct: 93 -AENI--------------------LSGGQRQRLGLARALYGNPRILVLDEPNSHLDVEG 131
Query: 196 RADVVKLLKHLKKE-LTILVVSHDLKEMAALVD 227
+ + + LK T +V++H E A D
Sbjct: 132 ERALNQAIAALKAAGATRIVIAHR-PETLASAD 163
|
This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substrates ranges from inorganic ions, nutrients such as amino acids, sugars, or peptides, hydrophobic drugs, to large polypeptides, such as HlyA. Length = 173 |
| >gnl|CDD|237453 PRK13633, PRK13633, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 97.5 bits (243), Expect = 3e-24
Identities = 75/234 (32%), Positives = 122/234 (52%), Gaps = 24/234 (10%)
Query: 18 LEVRDVSYR----PPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTS 73
++ ++VSY+ T+ L+ V+ + + F +I GR+GSGK+T+ + + L P+
Sbjct: 5 IKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSE 64
Query: 74 GSINIRGYNNDGEPN-----NSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSG 128
G + + G + E N N K G+VFQ P+ VA V ++V FG P G
Sbjct: 65 GKVYVDGLDTSDEENLWDIRN--------KAGMVFQNPDNQIVATIVEEDVAFG-PENLG 115
Query: 129 SIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPL 188
I +E + + ++ VG+ PH LSGG K+R+A+A L P+ +I DEP
Sbjct: 116 -IPPEE-IRERVDESLKKVGMYEYR-RHAPHLLSGGQKQRVAIAGILAMRPECIIFDEPT 172
Query: 189 AGLDWKARADVVKLLKHLKKE--LTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240
A LD R +VV +K L K+ +TI++++H ++E A D MD G ++E
Sbjct: 173 AMLDPSGRREVVNTIKELNKKYGITIILITHYMEE-AVEADRIIVMDSGKVVME 225
|
Length = 280 |
| >gnl|CDD|213223 cd03256, ABC_PhnC_transporter, ATP-binding cassette domain of the binding protein-dependent phosphonate transport system | Back alignment and domain information |
|---|
Score = 96.1 bits (240), Expect = 4e-24
Identities = 71/219 (32%), Positives = 110/219 (50%), Gaps = 31/219 (14%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
+EV ++S P L VS S+ F + G SG+GK+TLL+ L GL +PTSGS+
Sbjct: 1 IEVENLSKTYPNG-KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVL 59
Query: 78 IRGYNNDGEPNNSPEPLPPEKVGIVFQ---FPERYFVADNVLD---------EVIFGWPR 125
I G + + ++G++FQ ER V +NVL +FG
Sbjct: 60 IDGTDINKLK-GKALRQLRRQIGMIFQQFNLIERLSVLENVLSGRLGRRSTWRSLFGLF- 117
Query: 126 QSGSIQLKEYLALNLQRAINWVGLDGTSL---DKDPHSLSGGYKRRLALAIQLVQVPDLL 182
+ + LA L+R VGL + D+ LSGG ++R+A+A L+Q P L+
Sbjct: 118 --PKEEKQRALAA-LER----VGLLDKAYQRADQ----LSGGQQQRVAIARALMQQPKLI 166
Query: 183 ILDEPLAGLDWKARADVVKLLKHLKKE--LTILVVSHDL 219
+ DEP+A LD + V+ LLK + +E +T++V H +
Sbjct: 167 LADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQV 205
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only prokaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 241 |
| >gnl|CDD|226905 COG4525, TauB, ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 96.4 bits (240), Expect = 6e-24
Identities = 70/207 (33%), Positives = 97/207 (46%), Gaps = 18/207 (8%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
L V +S G L VS ++ ++ G SG GKTTLL L+AG P+ GSI
Sbjct: 4 LNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQ 63
Query: 78 IRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWP-RQSGSIQLKEYL 136
+ N P + G+VFQ E NV+D V FG R Q +E
Sbjct: 64 L---------NGRRIEGPGAERGVVFQ-NEALLPWLNVIDNVAFGLQLRGIEKAQRREIA 113
Query: 137 ALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKAR 196
L VGL+G K LSGG ++R+ +A L P LL+LDEP LD R
Sbjct: 114 HQMLAL----VGLEGAE-HKYIWQLSGGMRQRVGIARALAVEPQLLLLDEPFGALDALTR 168
Query: 197 ADVVKLLKHLKKE--LTILVVSHDLKE 221
+ +LL L +E +L+++HD++E
Sbjct: 169 EQMQELLLDLWQETGKQVLLITHDIEE 195
|
Length = 259 |
| >gnl|CDD|130254 TIGR01186, proV, glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Score = 97.6 bits (243), Expect = 8e-24
Identities = 64/199 (32%), Positives = 99/199 (49%), Gaps = 15/199 (7%)
Query: 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94
+N ++ + +I G SGSGK+T +++L L +PT+G I I G N + +
Sbjct: 9 VNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREV 68
Query: 95 PPEKVGIVFQ----FPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLD 150
+K+G+VFQ FP + + L + GWP Q + E L L VGL+
Sbjct: 69 RRKKIGMVFQQFALFPHMTILQNTSLGPELLGWPEQERKEKALELLKL--------VGLE 120
Query: 151 GTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKEL 210
+ P LSGG ++R+ LA L PD+L++DE + LD R + LK L+ L
Sbjct: 121 EY-EHRYPDELSGGMQQRVGLARALAAEPDILLMDEAFSALDPLIRDSMQDELKKLQATL 179
Query: 211 --TILVVSHDLKEMAALVD 227
TI+ ++HDL E + D
Sbjct: 180 QKTIVFITHDLDEAIRIGD 198
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lactis functionally complements an E.coli proU mutant. The comlementing locus is similar to a opuA locus in B.sutlis. This clarifies the differences in nomenclature [Transport and binding proteins, Amino acids, peptides and amines]. Length = 363 |
| >gnl|CDD|213212 cd03245, ABCC_bacteriocin_exporters, ATP-binding cassette domain of bacteriocin exporters, subfamily C | Back alignment and domain information |
|---|
Score = 94.6 bits (236), Expect = 9e-24
Identities = 70/242 (28%), Positives = 114/242 (47%), Gaps = 54/242 (22%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSL-PEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSI 76
+E R+VS+ P ++ L+ VS ++ + +I GR GSGK+TLL+LLAGL KPTSGS+
Sbjct: 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAII-GRVGSGKSTLLKLLAGLYKPTSGSV 61
Query: 77 NIRGYNNDGEPNNSPEPLPP----EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQL 132
+ G + L P +G V Q D +F G+ L
Sbjct: 62 LLDGTDIR--------QLDPADLRRNIGYVPQ------------DVTLF-----YGT--L 94
Query: 133 KEYLALNLQ--------RAINWVGLDGTSLDKDPH-----------SLSGGYKRRLALAI 173
++ + L RA G+ ++K P+ LSGG ++ +ALA
Sbjct: 95 RDNITLGAPLADDERILRAAELAGVT-DFVNKHPNGLDLQIGERGRGLSGGQRQAVALAR 153
Query: 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMD 233
L+ P +L+LDEP + +D + + + L+ L + T+++++H + LVD MD
Sbjct: 154 ALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPS-LLDLVDRIIVMD 212
Query: 234 MG 235
G
Sbjct: 213 SG 214
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. Length = 220 |
| >gnl|CDD|184202 PRK13642, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 95.5 bits (237), Expect = 1e-23
Identities = 72/216 (33%), Positives = 122/216 (56%), Gaps = 23/216 (10%)
Query: 18 LEVRDVSYR-PPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSI 76
LEV ++ ++ + V+ LNGVSFS+ + + I G++GSGK+T +L+ GL + G +
Sbjct: 5 LEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKV 64
Query: 77 NIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGW-----PRQSGSIQ 131
I G E + K+G+VFQ P+ FV V D+V FG PR+ +
Sbjct: 65 KIDGELLTAENVWNLR----RKIGMVFQNPDNQFVGATVEDDVAFGMENQGIPREEMIKR 120
Query: 132 LKE-YLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAG 190
+ E LA+N+ LD + ++P LSGG K+R+A+A + P+++ILDE +
Sbjct: 121 VDEALLAVNM--------LDFKT--REPARLSGGQKQRVAVAGIIALRPEIIILDESTSM 170
Query: 191 LDWKARADVVKLLKHLKKE--LTILVVSHDLKEMAA 224
LD R ++++++ +K++ LT+L ++HDL E A+
Sbjct: 171 LDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAAS 206
|
Length = 277 |
| >gnl|CDD|188394 TIGR03864, PQQ_ABC_ATP, ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Score = 94.7 bits (236), Expect = 1e-23
Identities = 66/220 (30%), Positives = 106/220 (48%), Gaps = 36/220 (16%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
LEV +S+R + L+ VSF++ F + G +G+GK+TL LL L G I+
Sbjct: 2 LEVAGLSFRYGARRA--LDDVSFTVRPGRFVALLGPNGAGKSTLFSLLTRLYVAQEGQIS 59
Query: 78 IRGYNNDGEPNNSPEPLPPEKVGIVFQFPE-----------RYFVADNVLDEVIFGWPRQ 126
+ G++ P L ++G+VFQ P RY A + G R
Sbjct: 60 VAGHDLRRAP---RAAL--ARLGVVFQQPTLDLDLSVRQNLRYHAA-------LHGLSRA 107
Query: 127 SGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDE 186
++ E LA +GL + DK L+GG++RR+ +A L+ P LL+LDE
Sbjct: 108 EARARIAELLAR--------LGLAERADDK-VRELNGGHRRRVEIARALLHRPALLLLDE 158
Query: 187 PLAGLDWKARADVVKLLKHLKKE--LTILVVSHDLKEMAA 224
P GLD +RA + ++ L ++ L++L +H + E+ A
Sbjct: 159 PTVGLDPASRAAITAHVRALARDQGLSVLWATHLVDEIEA 198
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 236 |
| >gnl|CDD|226641 COG4172, COG4172, ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 98.1 bits (245), Expect = 2e-23
Identities = 72/225 (32%), Positives = 108/225 (48%), Gaps = 36/225 (16%)
Query: 18 LEVRD--VSYRPPGTQVDILNGVSFSL-PEKSFGLIFGRSGSGKT----TLLQLLAGLSK 70
L +R+ V++ G V+ + G+SF + ++ L+ G SGSGK+ ++L LL +
Sbjct: 7 LSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALV-GESGSGKSVTALSILGLLPSPAA 65
Query: 71 PT-SGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGS 129
SGSI G + + K+G++FQ P + N P +
Sbjct: 66 AHPSGSILFDGEDLLAASERQLRGVRGNKIGMIFQEP---MTSLN---------PLHTIG 113
Query: 130 IQLKEYLALNL--------QRAINW---VGLD--GTSLDKDPHSLSGGYKRRLALAIQLV 176
QL E L L+ RA+ VG+ LD PH LSGG ++R+ +A+ L
Sbjct: 114 KQLAEVLRLHRGLSRAAARARALELLELVGIPEPEKRLDAYPHELSGGQRQRVMIAMALA 173
Query: 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLKKEL--TILVVSHDL 219
PDLLI DEP LD +A ++ LLK L+ EL IL ++HDL
Sbjct: 174 NEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDL 218
|
Length = 534 |
| >gnl|CDD|213191 cd03224, ABC_TM1139_LivF_branched, ATP-binding cassette domain of branched-chain amino acid transporter | Back alignment and domain information |
|---|
Score = 94.0 bits (235), Expect = 2e-23
Identities = 77/240 (32%), Positives = 111/240 (46%), Gaps = 68/240 (28%)
Query: 18 LEVRDVS--YRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGS 75
LEV +++ Y + IL GVS ++PE + GR+G+GKTTLL+ + GL P SGS
Sbjct: 1 LEVENLNAGYG----KSQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGS 56
Query: 76 INIRGYNNDGEPNNSPEPLPPEKV---GIVFQFPE--RYF----VADNV----------- 115
I G + G LPP + GI + PE R F V +N+
Sbjct: 57 IRFDGRDITG--------LPPHERARAGIGYV-PEGRRIFPELTVEENLLLGAYARRRAK 107
Query: 116 ----LDEV--IFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRL 169
L+ V +F PR LKE Q A GT LSGG ++ L
Sbjct: 108 RKARLERVYELF--PR------LKERRK---QLA-------GT--------LSGGEQQML 141
Query: 170 ALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKE-LTILVVSHDLKEMAALVDH 228
A+A L+ P LL+LDEP GL K ++ + ++ L+ E +TIL+V + + + D
Sbjct: 142 AIARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADR 201
|
LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids. The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. Length = 222 |
| >gnl|CDD|162242 TIGR01187, potA, spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 96.0 bits (239), Expect = 2e-23
Identities = 73/198 (36%), Positives = 103/198 (52%), Gaps = 27/198 (13%)
Query: 50 IFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEK--VGIVFQ--- 104
+ G SG GKTTLL+LLAG +P SGSI + DGE +PP + +VFQ
Sbjct: 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIML-----DGE---DVTNVPPHLRHINMVFQSYA 52
Query: 105 -FPERYFVADNVLDEV-IFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLS 162
FP V +NV + + PR ++ E L L V L+ + D+ PH LS
Sbjct: 53 LFPHMT-VEENVAFGLKMRKVPRAEIKPRVLEALRL--------VQLEEFA-DRKPHQLS 102
Query: 163 GGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKEL--TILVVSHDLK 220
GG ++R+ALA LV P +L+LDEPL+ LD K R + LK ++++L T + V+HD +
Sbjct: 103 GGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQLGITFVFVTHDQE 162
Query: 221 EMAALVDHSWRMDMGGFL 238
E + D M G
Sbjct: 163 EAMTMSDRIAIMRKGKIA 180
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included) [Transport and binding proteins, Amino acids, peptides and amines]. Length = 325 |
| >gnl|CDD|130252 TIGR01184, ntrCD, nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Score = 93.7 bits (233), Expect = 3e-23
Identities = 69/202 (34%), Positives = 106/202 (52%), Gaps = 28/202 (13%)
Query: 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94
L GV+ ++ + F + G SG GK+TLL L++GL++PTSG + + G EP
Sbjct: 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQIT-------EPG 53
Query: 95 PPEKVGIVFQ----FPERYFVADNV---LDEVIFGWPRQSGSIQLKEYLALNLQRAINWV 147
P V VFQ P V +N+ +D V+ + ++E++AL V
Sbjct: 54 PDRMV--VFQNYSLLPWLT-VRENIALAVDRVLPDLSKSERRAIVEEHIAL--------V 102
Query: 148 GLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLK 207
GL + DK P LSGG K+R+A+A L P +L+LDEP LD R ++ + L +
Sbjct: 103 GL-TEAADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDALTRGNLQEELMQIW 161
Query: 208 KE--LTILVVSHDLKEMAALVD 227
+E +T+L+V+HD+ E L D
Sbjct: 162 EEHRVTVLMVTHDVDEALLLSD 183
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase [Transport and binding proteins, Anions, Transport and binding proteins, Other]. Length = 230 |
| >gnl|CDD|131816 TIGR02769, nickel_nikE, nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Score = 94.1 bits (234), Expect = 4e-23
Identities = 79/245 (32%), Positives = 120/245 (48%), Gaps = 30/245 (12%)
Query: 16 SCLEVRDVS--YRPPG-----TQVDILNGVSFSLPE-KSFGLIFGRSGSGKTTLLQLLAG 67
S LEVRDV+ YR G + +L VS S+ E ++ GL+ GRSG GK+TL +LL G
Sbjct: 1 SLLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLL-GRSGCGKSTLARLLLG 59
Query: 68 LSKPTSGSINIRG---YNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWP 124
L KP G+++ RG Y D + + V +VFQ + ++I G P
Sbjct: 60 LEKPAQGTVSFRGQDLYQLDRKQRRAFR----RDVQLVFQDSPSAVNPRMTVRQII-GEP 114
Query: 125 -----RQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVP 179
S Q L ++ VGL DK P LSGG +R+ +A L P
Sbjct: 115 LRHLTSLDESEQKARIAEL-----LDMVGLRSEDADKLPRQLSGGQLQRINIARALAVKP 169
Query: 180 DLLILDEPLAGLDWKARADVVKLLKHLKKE--LTILVVSHDLKEMAALVDHSWRMDMGGF 237
L++LDE ++ LD +A +++LL+ L++ L ++HDL+ + + MD G
Sbjct: 170 KLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMD-KGQ 228
Query: 238 LVEQR 242
+VE+
Sbjct: 229 IVEEC 233
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase [Transport and binding proteins, Cations and iron carrying compounds]. Length = 265 |
| >gnl|CDD|224042 COG1117, PstB, ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 93.4 bits (233), Expect = 6e-23
Identities = 72/245 (29%), Positives = 122/245 (49%), Gaps = 46/245 (18%)
Query: 18 LEVRDVS--YRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTS-- 73
+EVRD++ Y L ++ +P+ + G SG GK+TLL+ L ++
Sbjct: 8 IEVRDLNLYY----GDKHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGA 63
Query: 74 ---GSINIRGYNNDGEPNNSPEPLPPE---KVGIVFQ----FPERYFVADNVLDEVIFGW 123
G + + DG+ P+ E +VG+VFQ FP + DNV +G
Sbjct: 64 RVEGEVLL-----DGKNIYDPKVDVVELRRRVGMVFQKPNPFPMSIY--DNVA----YG- 111
Query: 124 PRQSGSI--QLKEYLALNLQRAINWVGLDGTS--LDKDPHSLSGGYKRRL----ALAIQL 175
R G +L E + +L++A W D L K LSGG ++RL ALA++
Sbjct: 112 LRLHGIKDKELDEIVESSLKKAALW---DEVKDRLHKSALGLSGGQQQRLCIARALAVK- 167
Query: 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMG 235
P++L++DEP + LD + + +L+ LKK+ TI++V+H++++ A + D++ +G
Sbjct: 168 ---PEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLG 224
Query: 236 GFLVE 240
LVE
Sbjct: 225 E-LVE 228
|
Length = 253 |
| >gnl|CDD|224044 COG1119, ModF, ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 92.4 bits (230), Expect = 1e-22
Identities = 66/203 (32%), Positives = 99/203 (48%), Gaps = 14/203 (6%)
Query: 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93
IL +S+ + I G +G+GKTTLL LL G P+SG + + G E
Sbjct: 46 ILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLG-----RRFGKGET 100
Query: 94 LPP--EKVGIV-FQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLD 150
+ +++G+V + ER+ V + V D V+ G+ G Q A +L A + L
Sbjct: 101 IFELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQED-LTAEDLAAAQWLLELL 159
Query: 151 GTS--LDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHL-- 206
G D+ SLS G +RR+ +A LV+ P+LLILDEP GLD AR ++ L+ L
Sbjct: 160 GAKHLADRPFGSLSQGEQRRVLIARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAA 219
Query: 207 -KKELTILVVSHDLKEMAALVDH 228
+L V+H +E+ H
Sbjct: 220 SPGAPALLFVTHHAEEIPPCFTH 242
|
Length = 257 |
| >gnl|CDD|183055 PRK11247, ssuB, aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 92.4 bits (230), Expect = 1e-22
Identities = 68/196 (34%), Positives = 102/196 (52%), Gaps = 22/196 (11%)
Query: 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93
+LN + +P F + GRSG GK+TLL+LLAGL P++G + + G +P
Sbjct: 27 VLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGEL-LAG--------TAPLA 77
Query: 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTS 153
E ++FQ R V+D V G LK +A+ VGL +
Sbjct: 78 EAREDTRLMFQ-DARLLPWKKVIDNVGLG---------LKGQWRDAALQALAAVGLADRA 127
Query: 154 LDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKE--LT 211
+ P +LSGG K+R+ALA L+ P LL+LDEPL LD R ++ L++ L ++ T
Sbjct: 128 NEW-PAALSGGQKQRVALARALIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFT 186
Query: 212 ILVVSHDLKEMAALVD 227
+L+V+HD+ E A+ D
Sbjct: 187 VLLVTHDVSEAVAMAD 202
|
Length = 257 |
| >gnl|CDD|183244 PRK11629, lolD, lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 91.4 bits (227), Expect = 2e-22
Identities = 71/204 (34%), Positives = 104/204 (50%), Gaps = 19/204 (9%)
Query: 25 YRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNND 84
Y+ Q D+L+ VSFS+ E I G SGSGK+TLL LL GL PTSG + G
Sbjct: 15 YQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMS 74
Query: 85 GEPNNSPEPLPPEKVGIVFQF----PERYFVA-DNV-LDEVIFGWPRQSGSIQLKEYLAL 138
+ + L +K+G ++QF P+ F A +NV + +I + + E LA
Sbjct: 75 KLSSAAKAELRNQKLGFIYQFHHLLPD--FTALENVAMPLLIGKKKPAEINSRALEMLAA 132
Query: 139 NLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARAD 198
VGL+ + + P LSGG ++R+A+A LV P L++ DEP LD +
Sbjct: 133 --------VGLEHRANHR-PSELSGGERQRVAIARALVNNPRLVLADEPTGNLDARNADS 183
Query: 199 VVKLLKHLKKE--LTILVVSHDLK 220
+ +LL L + LVV+HDL+
Sbjct: 184 IFQLLGELNRLQGTAFLVVTHDLQ 207
|
Length = 233 |
| >gnl|CDD|213180 cd03213, ABCG_EPDR, Eye pigment and drug resistance transporter subfamily G of the ATP-binding cassette superfamily | Back alignment and domain information |
|---|
Score = 89.9 bits (224), Expect = 3e-22
Identities = 55/209 (26%), Positives = 86/209 (41%), Gaps = 52/209 (24%)
Query: 18 LEVRDVSY----RPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGL--SKP 71
L R+++ P + +L VS I G SG+GK+TLL LAG
Sbjct: 4 LSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLG 63
Query: 72 TSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQ 131
SG + I G + + +G V Q D+++ ++
Sbjct: 64 VSGEVLINGRP-------LDKRSFRKIIGYVPQ------------DDILHP------TLT 98
Query: 132 LKEYL--ALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLA 189
++E L A L+ LSGG ++R+++A++LV P LL LDEP +
Sbjct: 99 VRETLMFAAKLR------------------GLSGGERKRVSIALELVSNPSLLFLDEPTS 140
Query: 190 GLDWKARADVVKLLKHLKKE-LTILVVSH 217
GLD + V+ LL+ L TI+ H
Sbjct: 141 GLDSSSALQVMSLLRRLADTGRTIICSIH 169
|
ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR). DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. Length = 194 |
| >gnl|CDD|132302 TIGR03258, PhnT, 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Score = 93.5 bits (232), Expect = 3e-22
Identities = 70/213 (32%), Positives = 103/213 (48%), Gaps = 28/213 (13%)
Query: 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP--TSGSINIRGYNNDGEPNNSP 91
+L+ +S + + G+SG GKTTLL+ +AG K +G I I +
Sbjct: 20 VLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRD--------L 71
Query: 92 EPLPPEK--VGIVFQ----FPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAIN 145
PP K + ++FQ FP V D V FG Q K +A + A+
Sbjct: 72 THAPPHKRGLALLFQNYALFPHL-----KVEDNVAFGLRAQK---MPKADIAERVADALK 123
Query: 146 WVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKH 205
VGL G + P LSGG ++R+A+A + PD+L+LDEPL+ LD RA++ + +
Sbjct: 124 LVGL-GDAAAHLPAQLSGGMQQRIAIARAIAIEPDVLLLDEPLSALDANIRANMREEIAA 182
Query: 206 LKKE---LTILVVSHDLKEMAALVDHSWRMDMG 235
L +E LTIL V+HD + L D + M G
Sbjct: 183 LHEELPELTILCVTHDQDDALTLADKAGIMKDG 215
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. Length = 362 |
| >gnl|CDD|130256 TIGR01188, drrA, daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Score = 92.1 bits (229), Expect = 4e-22
Identities = 65/214 (30%), Positives = 103/214 (48%), Gaps = 35/214 (16%)
Query: 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94
++GV+F + E G +G+GKTT +++L L +PTSG+ + GY+ EP
Sbjct: 9 VDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREPR-----K 63
Query: 95 PPEKVGIVFQFPERYFVADNVLDEVIFGW------------PRQSGSIQLKEYLALNLQR 142
+GIV Q+ +DE + G P+ + +E L L
Sbjct: 64 VRRSIGIVPQYAS--------VDEDLTGRENLEMMGRLYGLPKDEAEERAEELLEL---- 111
Query: 143 AINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKL 202
L G + D+ + SGG +RRL +A L+ PD+L LDEP GLD + R +
Sbjct: 112 ----FEL-GEAADRPVGTYSGGMRRRLDIAASLIHQPDVLFLDEPTTGLDPRTRRAIWDY 166
Query: 203 LKHLKKE-LTILVVSHDLKEMAALVDHSWRMDMG 235
++ LK+E +TIL+ +H ++E L D +D G
Sbjct: 167 IRALKEEGVTILLTTHYMEEADKLCDRIAIIDHG 200
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc [Transport and binding proteins, Other]. Length = 302 |
| >gnl|CDD|223487 COG0410, LivF, ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 90.6 bits (226), Expect = 4e-22
Identities = 79/247 (31%), Positives = 112/247 (45%), Gaps = 66/247 (26%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
LEV ++S Q L GVS + + GR+G+GKTTLL+ + GL +P SG I
Sbjct: 4 LEVENLSAGYGKIQ--ALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRII 61
Query: 78 IRGYNNDGEPNNSPEPLPPEKV---GIVFQFPE--RYF----VADN-------------- 114
G + G LPP + GI + PE R F V +N
Sbjct: 62 FDGEDITG--------LPPHERARLGIAY-VPEGRRIFPRLTVEENLLLGAYARRDKEAQ 112
Query: 115 --VLDEV--IFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLA 170
L+EV +F PR LKE QRA GT LSGG ++ LA
Sbjct: 113 ERDLEEVYELF--PR------LKERRN---QRA-------GT--------LSGGEQQMLA 146
Query: 171 LAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKE--LTILVVSHDLKEMAALVDH 228
+A L+ P LL+LDEP GL K ++ + +K L+KE +TIL+V + + + D
Sbjct: 147 IARALMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADR 206
Query: 229 SWRMDMG 235
+ ++ G
Sbjct: 207 GYVLENG 213
|
Length = 237 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 88.5 bits (220), Expect = 5e-22
Identities = 31/78 (39%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 159 HSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKE-LTILVVSH 217
LSGG ++R+ALA L+ PDLL+LDEP +GLD +R +++LL+ L +E T+++V+H
Sbjct: 79 PQLSGGQRQRVALARALLLNPDLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTH 138
Query: 218 DLKEMAALVDHSWRMDMG 235
D + D + G
Sbjct: 139 DPELAELAADRVIVLKDG 156
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|183063 PRK11264, PRK11264, putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Score = 90.6 bits (225), Expect = 6e-22
Identities = 72/242 (29%), Positives = 122/242 (50%), Gaps = 34/242 (14%)
Query: 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGS 75
S +EV+++ + G V L+G+ + I G SGSGKTTLL+ + L +P +G+
Sbjct: 2 SAIEVKNLVKKFHGQTV--LHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGT 59
Query: 76 INIRGYNNDGEPNNSPEPLPPEK---------VGIVFQ----FPERYFVADNVLDE--VI 120
I + D L +K VG VFQ FP R V +N+++ ++
Sbjct: 60 IRVGDITIDTA-----RSLSQQKGLIRQLRQHVGFVFQNFNLFPHRT-VLENIIEGPVIV 113
Query: 121 FGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPD 180
G P++ + + +E LA VGL G P LSGG ++R+A+A L P+
Sbjct: 114 KGEPKEEATARARELLAK--------VGLAGKE-TSYPRRLSGGQQQRVAIARALAMRPE 164
Query: 181 LLILDEPLAGLDWKARADVVKLLKHLKKE-LTILVVSHDLKEMAALVDHSWRMDMGGFLV 239
+++ DEP + LD + +V+ ++ L +E T+++V+H++ + D + MD G +V
Sbjct: 165 VILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMD-QGRIV 223
Query: 240 EQ 241
EQ
Sbjct: 224 EQ 225
|
Length = 250 |
| >gnl|CDD|237648 PRK14250, PRK14250, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 90.3 bits (224), Expect = 7e-22
Identities = 67/229 (29%), Positives = 120/229 (52%), Gaps = 22/229 (9%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
+E ++VSY G + IL +S + I G SG+GK+TL++L+ L PT GSI
Sbjct: 4 IEFKEVSYSSFGKE--ILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSIL 61
Query: 78 IRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSG--SIQLKEY 135
I + + K+G+VFQ P + V D + +G P G ++ ++ Y
Sbjct: 62 I----DGVDIKTIDVIDLRRKIGMVFQQP--HLFEGTVKDNIEYG-PMLKGEKNVDVEYY 114
Query: 136 LALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKA 195
L++ VGL+ +D +LSGG +R+++A L P++L+LDEP + LD +
Sbjct: 115 LSI--------VGLNKEYATRDVKNLSGGEAQRVSIARTLANNPEVLLLDEPTSALDPTS 166
Query: 196 RADVVKLLKHLKKE--LTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242
+ +L+ LK + LT++ ++H++++ + D++ ++ G LVE
Sbjct: 167 TEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNK-GILVEYA 214
|
Length = 241 |
| >gnl|CDD|130344 TIGR01277, thiQ, thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 89.5 bits (222), Expect = 7e-22
Identities = 63/188 (33%), Positives = 99/188 (52%), Gaps = 25/188 (13%)
Query: 50 IFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERY 109
I G SG+GK+TLL L+AG +P SGSI + ++ G P P V ++FQ
Sbjct: 29 IMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA---PYQRP---VSMLFQ----- 77
Query: 110 FVADNVLDEVIFGWPRQSGSIQLKEYLALN------LQRAINWVGLDGTSLDKDPHSLSG 163
+N+ + RQ+ + L L LN + A VG+ LD+ P LSG
Sbjct: 78 --ENNLFAHLTV---RQNIGLGLHPGLKLNAEQQEKVVDAAQQVGIADY-LDRLPEQLSG 131
Query: 164 GYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHL--KKELTILVVSHDLKE 221
G ++R+ALA LV+ +L+LDEP + LD R +++ L+K L +++ T+L+V+H L +
Sbjct: 132 GQRQRVALARCLVRPNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSD 191
Query: 222 MAALVDHS 229
A+
Sbjct: 192 ARAIASQI 199
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found [Transport and binding proteins, Other]. Length = 213 |
| >gnl|CDD|236997 PRK11831, PRK11831, putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Score = 90.6 bits (225), Expect = 1e-21
Identities = 72/217 (33%), Positives = 106/217 (48%), Gaps = 13/217 (5%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
+++R VS+ G + I + +S ++P I G SG GKTTLL+L+ G P G I
Sbjct: 8 VDMRGVSFTR-GNRC-IFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEIL 65
Query: 78 IRGYNNDGEPNNSPEPL--PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEY 135
G N P S L +++ ++FQ F NV D V +P + +
Sbjct: 66 FDGEN---IPAMSRSRLYTVRKRMSMLFQ-SGALFTDMNVFDNV--AYPLREHTQLPAPL 119
Query: 136 LALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKA 195
L + + VGL G + P LSGG RR ALA + PDL++ DEP G D
Sbjct: 120 LHSTVMMKLEAVGLRGAA-KLMPSELSGGMARRAALARAIALEPDLIMFDEPFVGQDPIT 178
Query: 196 RADVVKLLKHLKKEL--TILVVSHDLKEMAALVDHSW 230
+VKL+ L L T +VVSHD+ E+ ++ DH++
Sbjct: 179 MGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAY 215
|
Length = 269 |
| >gnl|CDD|237420 PRK13537, PRK13537, nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Score = 91.0 bits (226), Expect = 1e-21
Identities = 76/217 (35%), Positives = 121/217 (55%), Gaps = 23/217 (10%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSL-PEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSI 76
++ R+V R G ++ +++G+SF + + FGL+ G +G+GKTT L++L GL+ P +GSI
Sbjct: 8 IDFRNVEKRY-GDKL-VVDGLSFHVQRGECFGLL-GPNGAGKTTTLRMLLGLTHPDAGSI 64
Query: 77 NIRGYNNDGEPNNSPEPLPPEKVGIVFQF----PERYFVADNVLDEVIFGWPRQSGSIQL 132
++ G EP S ++VG+V QF P+ + V +N+L +FG +
Sbjct: 65 SLCG-----EPVPSRARHARQRVGVVPQFDNLDPD-FTVRENLL---VFGRYFGLSAAAA 115
Query: 133 KEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLD 192
+ + L+ A L+ + D LSGG KRRL LA LV PD+L+LDEP GLD
Sbjct: 116 RALVPPLLEFA----KLENKA-DAKVGELSGGMKRRLTLARALVNDPDVLVLDEPTTGLD 170
Query: 193 WKARADVVKLLKHL-KKELTILVVSHDLKEMAALVDH 228
+AR + + L+ L + TIL+ +H ++E L D
Sbjct: 171 PQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDR 207
|
Length = 306 |
| >gnl|CDD|226647 COG4181, COG4181, Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Score = 88.6 bits (220), Expect = 2e-21
Identities = 69/214 (32%), Positives = 104/214 (48%), Gaps = 22/214 (10%)
Query: 31 QVDILNGVSFSL-PEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNN 89
++ IL GV + ++ ++ G SGSGK+TLL +LAGL P+SG + + G +
Sbjct: 22 ELSILKGVELVVKRGETVAIV-GPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDED 80
Query: 90 SPEPLPPEKVGIVFQFPERYFVADNV--LDEVIFGWPRQSGSIQLK-EYLALNLQRAINW 146
+ L VG VFQ + + N+ L+ V ++L+ E A + A
Sbjct: 81 ARAALRARHVGFVFQ---SFHLIPNLTALENVAL-------PLELRGESSADSRAGAKAL 130
Query: 147 ---VGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLL 203
VGL G L P LSGG ++R+ALA PD+L DEP LD + LL
Sbjct: 131 LEAVGL-GKRLTHYPAQLSGGEQQRVALARAFAGRPDVLFADEPTGNLDRATGDKIADLL 189
Query: 204 KHLKKE--LTILVVSHDLKEMAALVDHSWRMDMG 235
L +E T+++V+HD + +AA D R+ G
Sbjct: 190 FALNRERGTTLVLVTHDPQ-LAARCDRQLRLRSG 222
|
Length = 228 |
| >gnl|CDD|200134 TIGR01842, type_I_sec_PrtD, type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Score = 92.0 bits (229), Expect = 2e-21
Identities = 68/211 (32%), Positives = 102/211 (48%), Gaps = 26/211 (12%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
L V +V+ PPG + L G+SFSL I G SGSGK+TL +L+ G+ PTSGS+
Sbjct: 317 LSVENVTIVPPGGKKPTLRGISFSLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVR 376
Query: 78 IRGYNNDGEPNNSPEPLP------PEKV----GIVFQFPERYFVADNVLDEVIFGWPRQS 127
+ G + E P+ V G V + R+ +N E I + +
Sbjct: 377 LDGADLK---QWDRETFGKHIGYLPQDVELFPGTVAENIARF--GENADPEKIIEAAKLA 431
Query: 128 GSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEP 187
G + L L L G D T + +LSGG ++R+ALA L P L++LDEP
Sbjct: 432 GVHE----LILRLPD-----GYD-TVIGPGGATLSGGQRQRIALARALYGDPKLVVLDEP 481
Query: 188 LAGLDWKARADVVKLLKHLKKE-LTILVVSH 217
+ LD + + +K LK +T++V++H
Sbjct: 482 NSNLDEEGEQALANAIKALKARGITVVVITH 512
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 544 |
| >gnl|CDD|234189 TIGR03375, type_I_sec_LssB, type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Score = 91.9 bits (229), Expect = 3e-21
Identities = 71/229 (31%), Positives = 110/229 (48%), Gaps = 28/229 (12%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSL-PEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSI 76
+E R+VS+ PG + L+ VS ++ P + +I GR GSGK+TLL+LL GL +PT GS+
Sbjct: 464 IEFRNVSFAYPGQETPALDNVSLTIRPGEKVAII-GRIGSGKSTLLKLLLGLYQPTEGSV 522
Query: 77 NIRGYNNDGEPNNSPEPLPPE----KVGIVFQFPERYF--VADNVLDEVIFGWPRQSGSI 130
+ G + + P +G V Q P ++ + DN + G P
Sbjct: 523 LLDGVDIR--------QIDPADLRRNIGYVPQDPRLFYGTLRDN----IALGAPYADDEE 570
Query: 131 QLKEYLALNLQRAINWVGLDGTSLDKDPH----SLSGGYKRRLALAIQLVQVPDLLILDE 186
L+ A L +V LD SLSGG ++ +ALA L++ P +L+LDE
Sbjct: 571 ILR---AAELAGVTEFVRRHPDGLDMQIGERGRSLSGGQRQAVALARALLRDPPILLLDE 627
Query: 187 PLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMG 235
P + +D ++ LK T+++V+H + LVD MD G
Sbjct: 628 PTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRT-SLLDLVDRIIVMDNG 675
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export [Protein fate, Protein and peptide secretion and trafficking, Cellular processes, Pathogenesis]. Length = 694 |
| >gnl|CDD|223562 COG0488, Uup, ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Score = 91.2 bits (227), Expect = 4e-21
Identities = 61/214 (28%), Positives = 96/214 (44%), Gaps = 29/214 (13%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSL-PEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSI 76
LE +VS G ++ +L +SF + ++ G +G+GK+TLL+LLAG P SG++
Sbjct: 322 LEFENVSKGYDGGRL-LLKDLSFRIDRGDRIAIV-GPNGAGKSTLLKLLAGELGPLSGTV 379
Query: 77 NIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYL 136
+ K+G Q + VL+E + +++ YL
Sbjct: 380 KVG---------------ETVKIGYFDQHRDELDPDKTVLEE-LSEGFPDGDEQEVRAYL 423
Query: 137 ALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKAR 196
G G +K LSGG K RL LA L+Q P+LL+LDEP LD ++
Sbjct: 424 GR--------FGFTGEDQEKPVGVLSGGEKARLLLAKLLLQPPNLLLLDEPTNHLDIESL 475
Query: 197 ADVVKLLKHLKKELTILVVSHDLKEMAALVDHSW 230
+ + L + T+L+VSHD + + W
Sbjct: 476 EALEEALLDFEG--TVLLVSHDRYFLDRVATRIW 507
|
Length = 530 |
| >gnl|CDD|213214 cd03247, ABCC_cytochrome_bd, ATP-binding cassette domain of CydCD, subfamily C | Back alignment and domain information |
|---|
Score = 86.2 bits (214), Expect = 5e-21
Identities = 57/207 (27%), Positives = 89/207 (42%), Gaps = 45/207 (21%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
L + +VS+ P + +L +S L + + GRSGSGK+TLLQLL G KP G I
Sbjct: 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEIT 60
Query: 78 IRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLA 137
+ DG P + E + ++ Q P Y + +
Sbjct: 61 L-----DGVPVSDLEKALSSLISVLNQRP--YLFDTTLRN-------------------- 93
Query: 138 LNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARA 197
NL R SGG ++RLALA L+Q +++LDEP GLD
Sbjct: 94 -NLGR-----------------RFSGGERQRLALARILLQDAPIVLLDEPTVGLDPITER 135
Query: 198 DVVKLLKHLKKELTILVVSHDLKEMAA 224
++ L+ + K+ T++ ++H L +
Sbjct: 136 QLLSLIFEVLKDKTLIWITHHLTGIEH 162
|
The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilis, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. Length = 178 |
| >gnl|CDD|226963 COG4604, CeuD, ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 88.1 bits (219), Expect = 6e-21
Identities = 72/215 (33%), Positives = 114/215 (53%), Gaps = 15/215 (6%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
+ + +VS GT+V +L+ VS +P+ I G +G+GK+TLL +++ L K SG I
Sbjct: 2 ITIENVSKSY-GTKV-VLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEIT 59
Query: 78 IRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVAD-NVLDEVIFG-WPRQSGSIQLKEY 135
I G P+ +K+ I+ Q E + + V D V FG +P G + ++
Sbjct: 60 IDGLELTSTPSKELA----KKLSILKQ--ENHINSRLTVRDLVGFGRFPYSQGRLTKEDR 113
Query: 136 LALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKA 195
+N AI ++ L+ S D+ LSGG ++R +A+ L Q D ++LDEPL LD K
Sbjct: 114 RIIN--EAIEYLHLEDLS-DRYLDELSGGQRQRAFIAMVLAQDTDYVLLDEPLNNLDMKH 170
Query: 196 RADVVKLLKHLKKEL--TILVVSHDLKEMAALVDH 228
++K+L+ L EL TI+VV HD+ + DH
Sbjct: 171 SVQIMKILRRLADELGKTIVVVLHDINFASCYSDH 205
|
Length = 252 |
| >gnl|CDD|172749 PRK14261, PRK14261, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 87.6 bits (217), Expect = 8e-21
Identities = 61/212 (28%), Positives = 107/212 (50%), Gaps = 11/212 (5%)
Query: 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94
L ++ S+P+ + G SG GK+TLL+ ++ G +GE
Sbjct: 22 LYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD 81
Query: 95 P---PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSG---SIQLKEYLALNLQRAINWVG 148
K+G+VFQ P + ++ + V +G PR G L + +L+ A W
Sbjct: 82 VVALRRKIGMVFQRPNPF--PKSIYENVAYG-PRIHGEKNKKTLDTIVEKSLKGAALWDE 138
Query: 149 LDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK 208
+ L SLSGG ++RL +A L P+++++DEP + LD A A + L++ LKK
Sbjct: 139 VK-DRLHDSALSLSGGQQQRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKK 197
Query: 209 ELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240
E T+++V+H++++ A + D++ M +G L+E
Sbjct: 198 EYTVIIVTHNMQQAARVSDYTGFMYLGK-LIE 228
|
Length = 253 |
| >gnl|CDD|131368 TIGR02315, ABC_phnC, phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 87.0 bits (216), Expect = 1e-20
Identities = 65/220 (29%), Positives = 103/220 (46%), Gaps = 33/220 (15%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
LEV ++S P L ++ ++ F I G SG+GK+TLL+ + L +P+SGSI
Sbjct: 2 LEVENLSKVYPN-GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSIL 60
Query: 78 IRGY---NNDGEPNNSPEPLPPEKVGIVFQ---FPERYFVADNVLD---------EVIFG 122
+ G G+ ++G++FQ ER V +NVL + G
Sbjct: 61 LEGTDITKLRGKKLRKLR----RRIGMIFQHYNLIERLTVLENVLHGRLGYKPTWRSLLG 116
Query: 123 W-PRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDL 181
+ KE AL+ + D+ LSGG ++R+A+A L Q PDL
Sbjct: 117 RFSEED-----KE-RALSALERVGLADKAYQRADQ----LSGGQQQRVAIARALAQQPDL 166
Query: 182 LILDEPLAGLDWKARADVVKLLKHLKKE--LTILVVSHDL 219
++ DEP+A LD K V+ LK + KE +T+++ H +
Sbjct: 167 ILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQV 206
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates [Transport and binding proteins, Anions]. Length = 243 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 89.5 bits (222), Expect = 2e-20
Identities = 75/244 (30%), Positives = 125/244 (51%), Gaps = 39/244 (15%)
Query: 18 LEVRDVSYRPPGTQ---VDILNGVSFSLPEKS-FGLIFGRSGSGKTTLLQLLAGLSKPTS 73
++VR+VS R V ++ VS + E FG++ G SG+GKTTL +++AG+ +PTS
Sbjct: 280 IKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIV-GTSGAGKTTLSKIIAGVLEPTS 338
Query: 74 GSINIRGYNNDGEPNNSPEPLPPEK------VGIVFQ----FPERYFVADNVLDEVIFGW 123
G +N+R + E + +P P + +GI+ Q +P R V DN+ + +
Sbjct: 339 GEVNVRVGD---EWVDMTKPGPDGRGRAKRYIGILHQEYDLYPHRT-VLDNLTEAI---- 390
Query: 124 PRQSGSIQLKEYLALNLQRAI---NWVGLDGTS----LDKDPHSLSGGYKRRLALAIQLV 176
++L + LA +A+ VG D LDK P LS G + R+ALA L+
Sbjct: 391 -----GLELPDELAR--MKAVITLKMVGFDEEKAEEILDKYPDELSEGERHRVALAQVLI 443
Query: 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLKKEL--TILVVSHDLKEMAALVDHSWRMDM 234
+ P ++ILDEP +D + DV + ++E+ T ++VSHD+ + + D + M
Sbjct: 444 KEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRD 503
Query: 235 GGFL 238
G +
Sbjct: 504 GKIV 507
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|213265 cd03298, ABC_ThiQ_thiamine_transporter, ATP-binding cassette domain of the thiamine transport system | Back alignment and domain information |
|---|
Score = 86.0 bits (213), Expect = 2e-20
Identities = 65/189 (34%), Positives = 94/189 (49%), Gaps = 15/189 (7%)
Query: 50 IFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYN-NDGEPNNSPEPLPPEKVGIVFQFPER 108
I G SGSGK+TLL L+AG P SG + I G + P + P V ++FQ
Sbjct: 29 IVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPPADRP-------VSMLFQ-ENN 80
Query: 109 YFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRR 168
F V V G S ++L ++ A+ VGL G P LSGG ++R
Sbjct: 81 LFAHLTVEQNVGLG---LSPGLKLTAEDRQAIEVALARVGLAGLEKRL-PGELSGGERQR 136
Query: 169 LALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKE--LTILVVSHDLKEMAALV 226
+ALA LV+ +L+LDEP A LD RA+++ L+ L E +T+L+V+H ++ L
Sbjct: 137 VALARVLVRDKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLA 196
Query: 227 DHSWRMDMG 235
+D G
Sbjct: 197 QRVVFLDNG 205
|
Part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP. Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 211 |
| >gnl|CDD|183056 PRK11248, tauB, taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 86.7 bits (215), Expect = 2e-20
Identities = 64/210 (30%), Positives = 96/210 (45%), Gaps = 26/210 (12%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
L++ + G L ++ +L ++ G SG GKTTLL L+AG GSI
Sbjct: 2 LQISHLYADYGGKPA--LEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSIT 59
Query: 78 IRGYNNDGEPNNSPEPLPPEKVGIVFQ----FPERYFVADNVLDEVIFGWPRQSGSIQLK 133
+ G +G P + G+VFQ P R NV D V FG +
Sbjct: 60 LDGKPVEG---------PGAERGVVFQNEGLLPWR-----NVQDNVAFGLQLAGVEKMQR 105
Query: 134 EYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDW 193
+A + + VGL+G + LSGG ++R+ +A L P LL+LDEP LD
Sbjct: 106 LEIA---HQMLKKVGLEGAE-KRYIWQLSGGQRQRVGIARALAANPQLLLLDEPFGALDA 161
Query: 194 KARADVVKLLKHLKKEL--TILVVSHDLKE 221
R + LL L +E +L+++HD++E
Sbjct: 162 FTREQMQTLLLKLWQETGKQVLLITHDIEE 191
|
Length = 255 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 89.1 bits (222), Expect = 2e-20
Identities = 62/214 (28%), Positives = 104/214 (48%), Gaps = 14/214 (6%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
LE+R ++ R PG + VS S+ + + G +G+GK+TL+++L GL +P SG I
Sbjct: 5 LEMRGITKRFPGVVA--NDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIR 62
Query: 78 IRGYNNDGEPNNSPEPLPPEKVGIVFQFP---ERYFVADNVLDEVIFGWPRQSGSIQLKE 134
+ G SP +G+V Q VA+N+ ++ P + G I ++
Sbjct: 63 VDGKE---VRIKSPRDAIRLGIGMVHQHFMLVPTLTVAENI---ILGLEPSKGGLIDRRQ 116
Query: 135 YLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWK 194
++ GL D LS G ++R+ + L + LLILDEP A L +
Sbjct: 117 -ARARIKELSERYGLP-VDPDAKVADLSVGEQQRVEILKALYRGARLLILDEPTAVLTPQ 174
Query: 195 ARADVVKLLKHLKKE-LTILVVSHDLKEMAALVD 227
++ ++L+ L E TI+ ++H LKE+ A+ D
Sbjct: 175 EADELFEILRRLAAEGKTIIFITHKLKEVMAIAD 208
|
Length = 501 |
| >gnl|CDD|236689 PRK10419, nikE, nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Score = 86.7 bits (215), Expect = 3e-20
Identities = 72/211 (34%), Positives = 105/211 (49%), Gaps = 48/211 (22%)
Query: 34 ILNGVSFSLPE-KSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPE 92
+LN VS SL ++ L+ GRSG GK+TL +LL GL P+ G+++ RG E
Sbjct: 27 VLNNVSLSLKSGETVALL-GRSGCGKSTLARLLVGLESPSQGNVSWRG-----------E 74
Query: 93 PLPPEK----------VGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLA--LNL 140
PL + +VFQ A N PR++ ++E L L+L
Sbjct: 75 PLAKLNRAQRKAFRRDIQMVFQDS---ISAVN---------PRKTVREIIREPLRHLLSL 122
Query: 141 QRA---------INWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGL 191
+A + V LD + LDK P LSGG +R+ LA L P LLILDE ++ L
Sbjct: 123 DKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQRVCLARALAVEPKLLILDEAVSNL 182
Query: 192 DWKARADVVKLLKHLKKELTI--LVVSHDLK 220
D +A V++LLK L+++ L ++HDL+
Sbjct: 183 DLVLQAGVIRLLKKLQQQFGTACLFITHDLR 213
|
Length = 268 |
| >gnl|CDD|237652 PRK14275, PRK14275, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 86.9 bits (215), Expect = 3e-20
Identities = 63/190 (33%), Positives = 109/190 (57%), Gaps = 18/190 (9%)
Query: 50 IFGRSGSGKTTLLQLLAGL-----SKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQ 104
I G SG GK+T L+ + + S T+G++ G + G+ + E L +K+G+VFQ
Sbjct: 70 IIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGK--FTDEVLLRKKIGMVFQ 127
Query: 105 FPERYFVADNVLDEVIFGWPRQSG---SIQLKEYLALNLQRAINWVGLDGTS--LDKDPH 159
P + ++ D + +G PR G QL+E + +L++A W D S LDK+
Sbjct: 128 KPNPF--PKSIFDNIAYG-PRLHGINDKKQLEEIVEKSLRKAALW---DEVSDRLDKNAL 181
Query: 160 SLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDL 219
LSGG ++RL +A L P++L+LDEP + LD KA A + L++ L+ TI++V+H++
Sbjct: 182 GLSGGQQQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNM 241
Query: 220 KEMAALVDHS 229
++ + + D++
Sbjct: 242 QQASRVSDYT 251
|
Length = 286 |
| >gnl|CDD|188099 TIGR00972, 3a0107s01c2, phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 85.8 bits (213), Expect = 4e-20
Identities = 63/216 (29%), Positives = 107/216 (49%), Gaps = 17/216 (7%)
Query: 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGL-----SKPTSGSINIRGYN-NDGEPN 88
L ++ +P+ + G SG GK+TLL+ L + G + G + D
Sbjct: 17 LKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYD--KK 74
Query: 89 NSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSI---QLKEYLALNLQRAIN 145
L +VG+VFQ P + ++ D + +G PR G +L E + +L++A
Sbjct: 75 IDVVELR-RRVGMVFQKPNPF--PMSIYDNIAYG-PRLHGIKDKKELDEIVEESLKKAAL 130
Query: 146 WVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKH 205
W + L LSGG ++RL +A L P++L+LDEP + LD A + +L++
Sbjct: 131 WDEVK-DRLHDSALGLSGGQQQRLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQE 189
Query: 206 LKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241
LKK+ TI++V+H++++ A + D + G LVE
Sbjct: 190 LKKKYTIVIVTHNMQQAARISDRTAFFYD-GELVEY 224
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters [Transport and binding proteins, Anions]. Length = 247 |
| >gnl|CDD|226969 COG4618, ArpD, ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Score = 88.1 bits (219), Expect = 5e-20
Identities = 66/211 (31%), Positives = 102/211 (48%), Gaps = 26/211 (12%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
L V ++ PPG + IL G+SF+L I G SGSGK+TL +LL G+ PTSGS+
Sbjct: 335 LSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVR 394
Query: 78 IRGYNNDGEPNNSPEPLP------PEKV----GIVFQFPERYFVADNVLDEVIFGWPRQS 127
+ G + E L P+ V G + + R+ + E + R +
Sbjct: 395 LDGADLR---QWDREQLGRHIGYLPQDVELFDGTIAENIARF--GEEADPEKVIEAARLA 449
Query: 128 GSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEP 187
G + L L L + G D T + + +LSGG ++R+ALA L P L++LDEP
Sbjct: 450 GVHE----LILRLPQ-----GYD-TRIGEGGATLSGGQRQRIALARALYGDPFLVVLDEP 499
Query: 188 LAGLDWKARADVVKLLKHLKKE-LTILVVSH 217
+ LD + A + + K T++V++H
Sbjct: 500 NSNLDSEGEAALAAAILAAKARGGTVVVIAH 530
|
Length = 580 |
| >gnl|CDD|213233 cd03266, ABC_NatA_sodium_exporter, ATP-binding cassette domain of the Na+ transporter | Back alignment and domain information |
|---|
Score = 84.3 bits (209), Expect = 8e-20
Identities = 58/215 (26%), Positives = 99/215 (46%), Gaps = 31/215 (14%)
Query: 24 SYRPPGTQVDILNGVSFSL-PEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYN 82
+R V ++GVSF++ P + GL+ G +G+GKTT L++LAGL +P +G + G++
Sbjct: 10 RFRDVKKTVQAVDGVSFTVKPGEVTGLL-GPNGAGKTTTLRMLAGLLEPDAGFATVDGFD 68
Query: 83 NDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLAL---- 138
EP + ++G V Y R + L+ + L
Sbjct: 69 VVKEPAEARR-----RLGFVSDSTGLY--------------DRLTARENLEYFAGLYGLK 109
Query: 139 --NLQRAINWVG--LD-GTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDW 193
L + + L LD+ S G ++++A+A LV P +L+LDEP GLD
Sbjct: 110 GDELTARLEELADRLGMEELLDRRVGGFSTGMRQKVAIARALVHDPPVLLLDEPTTGLDV 169
Query: 194 KARADVVKLLKHLKKE-LTILVVSHDLKEMAALVD 227
A + + ++ L+ IL +H ++E+ L D
Sbjct: 170 MATRALREFIRQLRALGKCILFSTHIMQEVERLCD 204
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single integral membrane protein. Length = 218 |
| >gnl|CDD|234200 TIGR03411, urea_trans_UrtD, urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Score = 84.5 bits (210), Expect = 8e-20
Identities = 55/205 (26%), Positives = 95/205 (46%), Gaps = 28/205 (13%)
Query: 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94
LN +S + +I G +G+GKTT++ ++ G ++P GS+ G + PE
Sbjct: 18 LNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGT----DLTGLPEHQ 73
Query: 95 PPEK-VGIVFQFP---ERYFVADNVLD----------EVIFGWPRQSGSIQLKEYLALNL 140
+G FQ P E V +N L+ +F +++E L
Sbjct: 74 IARAGIGRKFQKPTVFENLTVFEN-LELALPRDKSVFASLFFRLSAEEKDRIEEVLET-- 130
Query: 141 QRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVV 200
+GL D+ LS G K+ L + + L+Q P LL+LDEP+AG+ +
Sbjct: 131 ------IGLAD-EADRLAGLLSHGQKQWLEIGMLLMQDPKLLLLDEPVAGMTDEETEKTA 183
Query: 201 KLLKHLKKELTILVVSHDLKEMAAL 225
+LLK L + +++VV HD++ + ++
Sbjct: 184 ELLKSLAGKHSVVVVEHDMEFVRSI 208
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 242 |
| >gnl|CDD|184594 PRK14264, PRK14264, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 85.7 bits (212), Expect = 1e-19
Identities = 67/226 (29%), Positives = 117/226 (51%), Gaps = 26/226 (11%)
Query: 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGL-----SKPTSGSINIRGYNNDGEPNN 89
L GVS +PEKS + G SG GK+T L+ L + + GS+ + G + + N
Sbjct: 61 LKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGVN 120
Query: 90 SPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSI---------------QLKE 134
E ++VG+VFQ P + ++ + + +G PR+ G I E
Sbjct: 121 LVEL--RKRVGMVFQSPNPF--PKSIRENISYG-PRKHGDINTGLLARLLGRDDKDAEDE 175
Query: 135 YLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWK 194
+ +L++A W ++ LD + LSGG ++RL +A L P+++++DEP + LD
Sbjct: 176 LVERSLRQAALWDEVN-DRLDDNALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPI 234
Query: 195 ARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240
A + + L++ L +E T++VV+H++++ A + D + GG LVE
Sbjct: 235 ATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGGELVE 280
|
Length = 305 |
| >gnl|CDD|227019 COG4674, COG4674, Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 84.7 bits (210), Expect = 1e-19
Identities = 69/236 (29%), Positives = 106/236 (44%), Gaps = 27/236 (11%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
L + VS G + LN +SFS+ ++ G +G+GKTTL+ ++ G ++P G +
Sbjct: 6 LYLDGVSVSFGGFKA--LNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVL 63
Query: 78 IRGYNNDGEPNNSPEPLPPEK-VGIVFQFP---ERYFVADNV---------LDEVIFGWP 124
G D + PE +G FQ P E V +N+ + +F
Sbjct: 64 FDG---DTDLTKLPEHRIARAGIGRKFQKPTVFENLTVRENLELALNRDKSVFASLFARL 120
Query: 125 RQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLIL 184
R ++ E LA +GL G D+ LS G K+ L + + L Q P LL+L
Sbjct: 121 RAEERRRIDELLAT--------IGL-GDERDRLAALLSHGQKQWLEIGMLLAQDPKLLLL 171
Query: 185 DEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240
DEP+AG+ +LLK L + +ILVV HD+ + + D + G L E
Sbjct: 172 DEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAE 227
|
Length = 249 |
| >gnl|CDD|213221 cd03254, ABCC_Glucan_exporter_like, ATP-binding cassette domain of glucan transporter and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 83.8 bits (208), Expect = 1e-19
Identities = 52/206 (25%), Positives = 94/206 (45%), Gaps = 16/206 (7%)
Query: 19 EVRDV--SYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSI 76
E +V SY + +L ++FS+ I G +G+GKTTL+ LL P G I
Sbjct: 4 EFENVNFSYDE---KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQI 60
Query: 77 NIRGYNNDGEPNNS-PEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEY 135
I DG +G+V Q + + + +++ + G P + ++
Sbjct: 61 LI-----DGIDIRDISRKSLRSMIGVVLQ--DTFLFSGTIMENIRLGRPNATDEEVIEAA 113
Query: 136 LALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDW 193
I + G D T L ++ +LS G ++ LA+A +++ P +LILDE + +D
Sbjct: 114 KEAGAHDFIMKLPNGYD-TVLGENGGNLSQGERQLLAIARAMLRDPKILILDEATSNIDT 172
Query: 194 KARADVVKLLKHLKKELTILVVSHDL 219
+ + + L+ L K T ++++H L
Sbjct: 173 ETEKLIQEALEKLMKGRTSIIIAHRL 198
|
Glucan exporter ATP-binding protein. In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virulence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 229 |
| >gnl|CDD|184204 PRK13645, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 85.1 bits (210), Expect = 1e-19
Identities = 62/204 (30%), Positives = 96/204 (47%), Gaps = 6/204 (2%)
Query: 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94
LN S + + + G +GSGK+T++QL GL +G + Y E
Sbjct: 27 LNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKEVK 86
Query: 95 PPEK-VGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTS 153
K +G+VFQFPE + + ++ FG P G K+ + + V L
Sbjct: 87 RLRKEIGLVFQFPEYQLFQETIEKDIAFG-PVNLGEN--KQEAYKKVPELLKLVQLPEDY 143
Query: 154 LDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELT-- 211
+ + P LSGG KRR+ALA + + L+LDEP GLD K D + L + L KE
Sbjct: 144 VKRSPFELSGGQKRRVALAGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKR 203
Query: 212 ILVVSHDLKEMAALVDHSWRMDMG 235
I++V+H++ ++ + D M G
Sbjct: 204 IIMVTHNMDQVLRIADEVIVMHEG 227
|
Length = 289 |
| >gnl|CDD|226929 COG4559, COG4559, ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 84.3 bits (209), Expect = 2e-19
Identities = 63/224 (28%), Positives = 99/224 (44%), Gaps = 30/224 (13%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
+ ++SY G ++ L+GVS L I G +G+GK+TLL+ L+G P SG +
Sbjct: 2 IRAENLSYSLAGRRL--LDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVT 59
Query: 78 IRGYNNDGEPNNSPEPLP------PEKVGIVFQFPERYFVADNVLDEVIFG-WPRQSGSI 130
N + PE L P+ + F F V + V G P +SG
Sbjct: 60 ---LNGVPLNSWPPEELARHRAVLPQNSSLAFPFT--------VQEVVQMGRIPHRSGRE 108
Query: 131 QLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQV------PDLLIL 184
++ +A+ L G + +D +LSGG ++R+ LA L Q+ L L
Sbjct: 109 PEED--ERIAAQALAATDLSGLA-GRDYRTLSGGEQQRVQLARVLAQLWPPVPSGRWLFL 165
Query: 185 DEPLAGLDWKARADVVKLLKHL-KKELTILVVSHDLKEMAALVD 227
DEP + LD + ++L + L ++ +L V HDL A D
Sbjct: 166 DEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYAD 209
|
Length = 259 |
| >gnl|CDD|106587 PRK13644, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 84.3 bits (208), Expect = 2e-19
Identities = 72/232 (31%), Positives = 115/232 (49%), Gaps = 26/232 (11%)
Query: 18 LEVRDVSYR-PPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSI 76
+ + +VSY P GT L ++ + + + I G++GSGK+TL L GL +P G +
Sbjct: 2 IRLENVSYSYPDGTPA--LENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKV 59
Query: 77 NIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYL 136
+ G + G+ + + VGIVFQ PE FV V +++ FG E L
Sbjct: 60 LVSGIDT-GDFSKLQG--IRKLVGIVFQNPETQFVGRTVEEDLAFG----------PENL 106
Query: 137 AL-------NLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLA 189
L + RA+ +GL + P +LSGG + +ALA L P+ LI DE +
Sbjct: 107 CLPPIEIRKRVDRALAEIGL-EKYRHRSPKTLSGGQGQCVALAGILTMEPECLIFDEVTS 165
Query: 190 GLDWKARADVVKLLKHL-KKELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240
LD + V++ +K L +K TI+ ++H+L+E+ D MD G ++E
Sbjct: 166 MLDPDSGIAVLERIKKLHEKGKTIVYITHNLEELHD-ADRIIVMDRGKIVLE 216
|
Length = 274 |
| >gnl|CDD|226952 COG4586, COG4586, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 85.1 bits (211), Expect = 2e-19
Identities = 59/220 (26%), Positives = 99/220 (45%), Gaps = 13/220 (5%)
Query: 19 EVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINI 78
+ + ++ + +SF +P+ G +G+GK+T L++L GL PTSG + +
Sbjct: 24 GSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVRV 83
Query: 79 RGYNNDGEP-NNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLA 137
G +P E L +G+V + + LD + I E+ A
Sbjct: 84 NGK----DPFRRREEYL--RSIGLVMGQKLQLWWDLPALDS--LEVLKLIYEIPDDEF-A 134
Query: 138 LNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARA 197
L + L+G L LS G + R LA L+ P +L LDEP GLD A+A
Sbjct: 135 ERLDFLTEILDLEG-FLKWPVRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQA 193
Query: 198 DVVKLLKHL--KKELTILVVSHDLKEMAALVDHSWRMDMG 235
++ + LK +++ T+L+ +H ++A L D +D G
Sbjct: 194 NIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQG 233
|
Length = 325 |
| >gnl|CDD|131258 TIGR02203, MsbA_lipidA, lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Score = 86.3 bits (214), Expect = 2e-19
Identities = 62/207 (29%), Positives = 107/207 (51%), Gaps = 14/207 (6%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
+E R+V++R PG L+ +S + + GRSGSGK+TL+ L+ +P SG I
Sbjct: 331 VEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQIL 390
Query: 78 IRGYNNDGEP--NNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEY 135
+ DG + + L +V +V Q + D + + + +G Q+ +++
Sbjct: 391 L-----DGHDLADYTLASL-RRQVALVSQ--DVVLFNDTIANNIAYGRTEQADRAEIERA 442
Query: 136 L-ALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLD 192
L A Q ++ + GLD T + ++ LSGG ++RLA+A L++ +LILDE + LD
Sbjct: 443 LAAAYAQDFVDKLPLGLD-TPIGENGVLLSGGQRQRLAIARALLKDAPILILDEATSALD 501
Query: 193 WKARADVVKLLKHLKKELTILVVSHDL 219
++ V L+ L + T LV++H L
Sbjct: 502 NESERLVQAALERLMQGRTTLVIAHRL 528
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes [Cell envelope, Biosynthesis and degradation of surface polysaccharides and lipopolysaccharides, Transport and binding proteins, Other]. Length = 571 |
| >gnl|CDD|183133 PRK11432, fbpC, ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 84.8 bits (210), Expect = 3e-19
Identities = 71/227 (31%), Positives = 119/227 (52%), Gaps = 29/227 (12%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
+ +++++ R G+ I N ++ ++ + + + G SG GKTT+L+L+AGL KPT G I
Sbjct: 7 VVLKNITKRF-GSNTVIDN-LNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIF 64
Query: 78 IRGYNNDGEPNNSPEPLPPEKVGIVFQ----FPERYFVADNV---LDEVIFGWPRQSGSI 130
I DGE + + + + +VFQ FP + +NV L + G P++
Sbjct: 65 I-----DGE-DVTHRSIQQRDICMVFQSYALFPHMS-LGENVGYGLK--MLGVPKEERKQ 115
Query: 131 QLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAG 190
++KE L L V L G D+ +SGG ++R+ALA L+ P +L+ DEPL+
Sbjct: 116 RVKEALEL--------VDLAGFE-DRYVDQISGGQQQRVALARALILKPKVLLFDEPLSN 166
Query: 191 LDWKARADVVKLLKHLKKELTI--LVVSHDLKEMAALVDHSWRMDMG 235
LD R + + ++ L+++ I L V+HD E A+ D M+ G
Sbjct: 167 LDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKG 213
|
Length = 351 |
| >gnl|CDD|226637 COG4167, SapF, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 83.7 bits (207), Expect = 3e-19
Identities = 68/238 (28%), Positives = 106/238 (44%), Gaps = 36/238 (15%)
Query: 18 LEVRDVSYRPPGT-------QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK 70
LEVR++S V+ + VSF+L E I G +GSGK+TL ++LAG+ +
Sbjct: 5 LEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE 64
Query: 71 PTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSI 130
PTSG I I ND + +++ ++FQ P PR
Sbjct: 65 PTSGEILI----NDHPLHFGDYSFRSKRIRMIFQDPNTSLN------------PRLRIGQ 108
Query: 131 QLKEYLALN--------LQRAIN---WVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVP 179
L L LN ++ VGL + PH L+ G K+R+ALA L+ P
Sbjct: 109 ILDFPLRLNTDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQKQRVALARALILRP 168
Query: 180 DLLILDEPLAGLDWKARADVVKLLKHLKKELTI--LVVSHDLKEMAALVDHSWRMDMG 235
++I DE LA LD R+ ++ L+ L+++ I + V+ + + + D M G
Sbjct: 169 KIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEG 226
|
Length = 267 |
| >gnl|CDD|236865 PRK11160, PRK11160, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 85.3 bits (212), Expect = 5e-19
Identities = 67/244 (27%), Positives = 105/244 (43%), Gaps = 48/244 (19%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
L + +VS+ P +L G+S + + GR+G GK+TLLQLL P G I
Sbjct: 339 LTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEIL 398
Query: 78 IRGYNNDGEPNNS-PEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYL 136
+ +G+P E + + +V Q +F S + L++ L
Sbjct: 399 L-----NGQPIADYSEAALRQAISVVSQRVH------------LF-----SAT--LRDNL 434
Query: 137 AL--------NLQRAINWVGLDGTSLDKDPHSL-----------SGGYKRRLALAIQLVQ 177
L L + VGL+ L +D L SGG +RRL +A L+
Sbjct: 435 LLAAPNASDEALIEVLQQVGLE--KLLEDDKGLNAWLGEGGRQLSGGEQRRLGIARALLH 492
Query: 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGF 237
LL+LDEP GLD + +++LL + T+L+++H L + D MD G
Sbjct: 493 DAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLEQF-DRICVMD-NGQ 550
Query: 238 LVEQ 241
++EQ
Sbjct: 551 IIEQ 554
|
Length = 574 |
| >gnl|CDD|163452 TIGR03740, galliderm_ABC, gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 82.1 bits (203), Expect = 5e-19
Identities = 68/218 (31%), Positives = 111/218 (50%), Gaps = 32/218 (14%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKS-FGLIFGRSGSGKTTLLQLLAGLSKPTSGSI 76
LE +++S R G Q +N +S ++P+ S +GL+ G +G+GK+TLL+++ G+ +PTSG I
Sbjct: 1 LETKNLSKRF-GKQ-TAVNNISLTVPKNSVYGLL-GPNGAGKSTLLKMITGILRPTSGEI 57
Query: 77 NIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERY---FVADNV-LDEVIFGWPRQSGSIQL 132
DG P + K+G + + P Y +N+ + + G P
Sbjct: 58 IF-----DGHPWTRKDL---HKIGSLIESPPLYENLTARENLKVHTTLLGLPDSR----- 104
Query: 133 KEYLALNLQRAINWVGLDGTSLDKDPHS-LSGGYKRRLALAIQLVQVPDLLILDEPLAGL 191
+ +N V L T K S G K+RL +AI L+ P LLILDEP GL
Sbjct: 105 -------IDEVLNIVDLTNT--GKKKAKQFSLGMKQRLGIAIALLNHPKLLILDEPTNGL 155
Query: 192 DWKARADVVKLLKHLKKE-LTILVVSHDLKEMAALVDH 228
D ++ +L++ ++ +T+++ SH L E+ L DH
Sbjct: 156 DPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADH 193
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. Length = 223 |
| >gnl|CDD|224057 COG1134, TagH, ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 5e-19
Identities = 59/197 (29%), Positives = 95/197 (48%), Gaps = 42/197 (21%)
Query: 34 ILNGVSFSLPE-KSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPE 92
L +SF + + + G+I G +G+GK+TLL+L+AG+ KPTSG + + G +
Sbjct: 42 ALKDISFEIYKGERVGII-GHNGAGKSTLLKLIAGIYKPTSGKVKVTG-----------K 89
Query: 93 PLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLD-- 150
P ++G F PE +N I L+ L L L R +D
Sbjct: 90 VAPLIELGAGFD-PE-LTGREN---------------IYLRG-LILGLTRKEIDEKVDEI 131
Query: 151 ------GTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLD--WKARADVVKL 202
G +D+ + S G RLA ++ PD+L+LDE LA D ++ + + +L
Sbjct: 132 IEFAELGDFIDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVGDAAFQEKC-LERL 190
Query: 203 LKHLKKELTILVVSHDL 219
+ ++K TI++VSHDL
Sbjct: 191 NELVEKNKTIVLVSHDL 207
|
Length = 249 |
| >gnl|CDD|182778 PRK10851, PRK10851, sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 84.0 bits (208), Expect = 6e-19
Identities = 75/218 (34%), Positives = 108/218 (49%), Gaps = 27/218 (12%)
Query: 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93
+LN +S +P + G SGSGKTTLL+++AGL TSG I G D ++ +
Sbjct: 17 VLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHG--TDVSRLHARD- 73
Query: 94 LPPEKVGIVFQFPERY--FVADNVLDEVIFG---WPRQ---SGSIQLKEYLALNLQRAIN 145
KVG VFQ Y F V D + FG PR+ + + + L +
Sbjct: 74 ---RKVGFVFQ---HYALFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQL-----LE 122
Query: 146 WVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKH 205
V L + D+ P LSGG K+R+ALA L P +L+LDEP LD + R ++ + L+
Sbjct: 123 MVQLAHLA-DRYPAQLSGGQKQRVALARALAVEPQILLLDEPFGALDAQVRKELRRWLRQ 181
Query: 206 LKKEL--TILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241
L +EL T + V+HD +E + D M G +EQ
Sbjct: 182 LHEELKFTSVFVTHDQEEAMEVADRVVVMSQGN--IEQ 217
|
Length = 353 |
| >gnl|CDD|183080 PRK11300, livG, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 82.7 bits (205), Expect = 6e-19
Identities = 67/237 (28%), Positives = 115/237 (48%), Gaps = 31/237 (13%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
L V + R G +N V+ + E+ + G +G+GKTT+ L G KPT G+I
Sbjct: 6 LSVSGLMMRFGGLLA--VNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTIL 63
Query: 78 IRGYNNDGEPNNSPEPLPPEKV---GIVFQFPE-RYFVADNVLDEVIFGWPRQSGSIQLK 133
+RG + +G LP ++ G+V F R F V++ ++ +Q +
Sbjct: 64 LRGQHIEG--------LPGHQIARMGVVRTFQHVRLFREMTVIENLLVAQHQQLKTGLFS 115
Query: 134 EYLAL---------NLQRAINW---VGLDGTSL-DKDPHSLSGGYKRRLALAIQLVQVPD 180
L L RA W VGL ++ +L+ G +RRL +A +V P+
Sbjct: 116 GLLKTPAFRRAESEALDRAATWLERVGL--LEHANRQAGNLAYGQQRRLEIARCMVTQPE 173
Query: 181 LLILDEPLAGLDWKARADVVKLLKHLKKE--LTILVVSHDLKEMAALVDHSWRMDMG 235
+L+LDEP AGL+ K ++ +L+ L+ E +T+L++ HD+K + + D + ++ G
Sbjct: 174 ILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQG 230
|
Length = 255 |
| >gnl|CDD|213185 cd03218, ABC_YhbG, ATP-binding cassette component of YhbG transport system | Back alignment and domain information |
|---|
Score = 81.8 bits (203), Expect = 7e-19
Identities = 68/227 (29%), Positives = 110/227 (48%), Gaps = 37/227 (16%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPE-KSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSI 76
L ++S R +V +NGVS S+ + + GL G +G+GKTT ++ GL KP SG I
Sbjct: 1 LRAENLSKRYGKRKV--VNGVSLSVKQGEIVGL-LGPNGAGKTTTFYMIVGLVKPDSGKI 57
Query: 77 NIRGYNNDGEPNNSPEPLPPEK---VGIVF--QFP---ERYFVADN---VLDEVIFGWPR 125
+ G LP K +GI + Q + V +N VL+ I G +
Sbjct: 58 LLDG--------QDITKLPMHKRARLGIGYLPQEASIFRKLTVEENILAVLE--IRGLSK 107
Query: 126 QSGSIQLKEYLA-LNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLIL 184
+ +L+E L ++ SLSGG +RR+ +A L P L+L
Sbjct: 108 KEREEKLEELLEEFHITHLRKSKAS----------SLSGGERRRVEIARALATNPKFLLL 157
Query: 185 DEPLAGLDWKARADVVKLLKHLK-KELTILVVSHDLKEMAALVDHSW 230
DEP AG+D A D+ K++K LK + + +L+ H+++E ++ D ++
Sbjct: 158 DEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAY 204
|
The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids. The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. Length = 232 |
| >gnl|CDD|213201 cd03234, ABCG_White, White pigment protein homolog of ABCG transporter subfamily | Back alignment and domain information |
|---|
Score = 81.5 bits (202), Expect = 9e-19
Identities = 59/202 (29%), Positives = 89/202 (44%), Gaps = 31/202 (15%)
Query: 28 PGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGL---SKPTSGSINIRGYNND 84
ILN VS + I G SGSGKTTLL ++G TSG I +
Sbjct: 16 WNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILF-----N 70
Query: 85 GEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDE----------VIFGWPRQSGSIQLKE 134
G+P P+ + V V Q D +L I PR+S K+
Sbjct: 71 GQPR-KPD-QFQKCVAYVRQD-------DILLPGLTVRETLTYTAILRLPRKSSDAIRKK 121
Query: 135 YLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWK 194
+ L R + + G + +SGG +RR+++A+QL+ P +LILDEP +GLD
Sbjct: 122 RVEDVLLRDLALTRIGGNLVK----GISGGERRRVSIAVQLLWDPKVLILDEPTSGLDSF 177
Query: 195 ARADVVKLLKHLKKELTILVVS 216
++V L L + I++++
Sbjct: 178 TALNLVSTLSQLARRNRIVILT 199
|
The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors. The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in macrophages, hepatocytes, and intestinal mucosa cells. ABCG1 (ABC8), the human homolog of the Drosophila white gene is induced in monocyte-derived macrophages during cholesterol influx mediated by acetylated low-density lipoprotein. It is possible that human ABCG1 forms heterodimers with several heterologous partners. Length = 226 |
| >gnl|CDD|237649 PRK14254, PRK14254, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 82.5 bits (204), Expect = 9e-19
Identities = 61/214 (28%), Positives = 109/214 (50%), Gaps = 16/214 (7%)
Query: 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGL-----SKPTSGSINIRG---YNNDGE 86
L+ VS +PE + G SG GK+T L+ + + + G + RG Y+ D +
Sbjct: 55 LDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADVD 114
Query: 87 PNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINW 146
P ++G+VFQ P + ++ D V +G Q + E + +L+RA W
Sbjct: 115 P-----VALRRRIGMVFQKPNPF--PKSIYDNVAYGLKIQGYDGDIDERVEESLRRAALW 167
Query: 147 VGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHL 206
+ LD LSGG ++RL +A + P+++++DEP + LD A + + L++ L
Sbjct: 168 DEVK-DQLDSSGLDLSGGQQQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEEL 226
Query: 207 KKELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240
+E T+++V+H++++ A + D + GG LVE
Sbjct: 227 AEEYTVVIVTHNMQQAARISDKTAVFLTGGELVE 260
|
Length = 285 |
| >gnl|CDD|236863 PRK11153, metN, DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 83.3 bits (207), Expect = 1e-18
Identities = 77/245 (31%), Positives = 123/245 (50%), Gaps = 47/245 (19%)
Query: 19 EVRDVS--YRPPGTQVDILNGVSFSLPEKS-FGLIFGRSGSGKTTLLQLLAGLSKPTSGS 75
E++++S + G + LN VS +P FG+I G SG+GK+TL++ + L +PTSG
Sbjct: 3 ELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVI-GASGAGKSTLIRCINLLERPTSGR 61
Query: 76 INIRGYNNDGEP----NNSPEPLPPEKVGIVFQFPERYF-------VADNV-LDEVIFGW 123
+ + DG+ + ++G++FQ +F V DNV L + G
Sbjct: 62 VLV-----DGQDLTALSEKELRKARRQIGMIFQ----HFNLLSSRTVFDNVALPLELAGT 112
Query: 124 PRQSGSIQLK--EYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDL 181
P+ I+ + E L L VGL + D+ P LSGG K+R+A+A L P +
Sbjct: 113 PKAE--IKARVTELLEL--------VGLSDKA-DRYPAQLSGGQKQRVAIARALASNPKV 161
Query: 182 LILDEPLAGLDWKARADVVKLLKHLKKEL--TILVVSHDLKEMA---ALVDHSWRMDMGG 236
L+ DE + LD +++LLK + +EL TI++++H EM + D +D G
Sbjct: 162 LLCDEATSALDPATTRSILELLKDINRELGLTIVLITH---EMDVVKRICDRVAVID-AG 217
Query: 237 FLVEQ 241
LVEQ
Sbjct: 218 RLVEQ 222
|
Length = 343 |
| >gnl|CDD|184590 PRK14249, PRK14249, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 81.7 bits (201), Expect = 1e-18
Identities = 63/202 (31%), Positives = 109/202 (53%), Gaps = 14/202 (6%)
Query: 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGY-----NNDGEPN 88
+L ++ PE+ I G SG GK+TLL+ L ++ SG+ + G N PN
Sbjct: 19 VLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGA-RLEGAVLLDNENIYSPN 77
Query: 89 NSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSI---QLKEYLALNLQRAIN 145
L ++VG+VFQ P + ++ D V FG PR G+ +L E + +L++A
Sbjct: 78 LDVVNLR-KRVGMVFQQPNPF--PKSIFDNVAFG-PRMLGTTAQSRLDEVVEKSLRQAAL 133
Query: 146 WVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKH 205
W + +L K +LSGG ++RL +A L P+++++DEP + LD + + +L++
Sbjct: 134 WDEVK-DNLHKSGLALSGGQQQRLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQE 192
Query: 206 LKKELTILVVSHDLKEMAALVD 227
LK+ TI +V+H++++ A D
Sbjct: 193 LKQNYTIAIVTHNMQQAARASD 214
|
Length = 251 |
| >gnl|CDD|213187 cd03220, ABC_KpsT_Wzt, ATP-binding cassette component of polysaccharide transport system | Back alignment and domain information |
|---|
Score = 81.0 bits (201), Expect = 1e-18
Identities = 65/207 (31%), Positives = 98/207 (47%), Gaps = 26/207 (12%)
Query: 32 VDILNGVSFSLPE-KSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNS 90
L VSF +P + GLI GR+G+GK+TLL+LLAG+ P SG++ +RG
Sbjct: 35 FWALKDVSFEVPRGERIGLI-GRNGAGKSTLLRLLAGIYPPDSGTVTVRG---------R 84
Query: 91 PEPLPPEKVGIVFQFPERYFVADNV-LDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGL 149
L G + R +N+ L+ + G R+ I K I + L
Sbjct: 85 VSSLLGLGGGFNPELTGR----ENIYLNGRLLGLSRK--EIDEKI------DEIIEFSEL 132
Query: 150 DGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKE 209
G +D + S G K RLA AI PD+L++DE LA D + + L+ L K+
Sbjct: 133 -GDFIDLPVKTYSSGMKARLAFAIATALEPDILLIDEVLAVGDAAFQEKCQRRLRELLKQ 191
Query: 210 L-TILVVSHDLKEMAALVDHSWRMDMG 235
T+++VSHD + L D + ++ G
Sbjct: 192 GKTVILVSHDPSSIKRLCDRALVLEKG 218
|
The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export. Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenza) and a cytoplasmic membrane protein MPA2. Length = 224 |
| >gnl|CDD|131367 TIGR02314, ABC_MetN, D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 83.0 bits (205), Expect = 2e-18
Identities = 65/220 (29%), Positives = 108/220 (49%), Gaps = 19/220 (8%)
Query: 29 GTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPN 88
+ LN VS +P + G SG+GK+TL++ + L +PTSGS+ + G D
Sbjct: 15 TKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDG--QDLTTL 72
Query: 89 NSPEPLPPEK-VGIVFQ----FPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRA 143
++ E + +G++FQ R + L + P+ ++ E LAL
Sbjct: 73 SNSELTKARRQIGMIFQHFNLLSSRTVFGNVALPLELDNTPKDEIKRKVTELLAL----- 127
Query: 144 INWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLL 203
VGL G D P +LSGG K+R+A+A L P +L+ DE + LD +++LL
Sbjct: 128 ---VGL-GDKHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSALDPATTQSILELL 183
Query: 204 KHLKKEL--TILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241
K + + L TIL+++H++ + + D + G L+EQ
Sbjct: 184 KEINRRLGLTILLITHEMDVVKRICDCVAVIS-NGELIEQ 222
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. Length = 343 |
| >gnl|CDD|184596 PRK14267, PRK14267, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 81.4 bits (201), Expect = 2e-18
Identities = 65/213 (30%), Positives = 103/213 (48%), Gaps = 18/213 (8%)
Query: 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGL-----SKPTSGSINIRGYNNDGEPN 88
++ GV +P+ + G SG GK+TLL+ L G + + G N
Sbjct: 19 VIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNI----- 73
Query: 89 NSPEPLPPE---KVGIVFQFPERYFVADNVLDEVIFGWPRQS---GSIQLKEYLALNLQR 142
SP+ P E +VG+VFQ+P F + D V G +L E + L++
Sbjct: 74 YSPDVDPIEVRREVGMVFQYPNP-FPHLTIYDNVAIGVKLNGLVKSKKELDERVEWALKK 132
Query: 143 AINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKL 202
A W + L+ P +LSGG ++RL +A L P +L++DEP A +D A + +L
Sbjct: 133 AALWDEVK-DRLNDYPSNLSGGQRQRLVIARALAMKPKILLMDEPTANIDPVGTAKIEEL 191
Query: 203 LKHLKKELTILVVSHDLKEMAALVDHSWRMDMG 235
L LKKE TI++V+H + A + D+ + +G
Sbjct: 192 LFELKKEYTIVLVTHSPAQAARVSDYVAFLYLG 224
|
Length = 253 |
| >gnl|CDD|215650 pfam00005, ABC_tran, ABC transporter | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 2e-18
Identities = 44/134 (32%), Positives = 67/134 (50%), Gaps = 18/134 (13%)
Query: 59 TTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFP---ERYFVADNV 115
+TLL+L+ GL +PTSG+I + G DG +S + L +G+VFQ P V +N+
Sbjct: 1 STLLKLITGLLQPTSGTILLDG--EDGTGLSSRKLLRKR-IGVVFQDPQLFPELTVRENL 57
Query: 116 LDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175
+ + A+ VGL + +LSGG K+R+A+A L
Sbjct: 58 FFGLRDKE-------ADARA-----EEALERVGLPDFLDREPVGTLSGGQKQRVAIARAL 105
Query: 176 VQVPDLLILDEPLA 189
++ P LL+LDEP A
Sbjct: 106 LKKPKLLLLDEPTA 119
|
ABC transporters for a large family of proteins responsible for translocation of a variety of compounds across biological membranes. ABC transporters are the largest family of proteins in many completely sequenced bacteria. ABC transporters are composed of two copies of this domain and two copies of a transmembrane domain pfam00664. These four domains may belong to a single polypeptide as in human CFTR, or belong in different polypeptide chains. Length = 119 |
| >gnl|CDD|213218 cd03251, ABCC_MsbA, ATP-binding cassette domain of the bacterial lipid flippase and related proteins, subfamily C | Back alignment and domain information |
|---|
Score = 80.7 bits (200), Expect = 2e-18
Identities = 61/205 (29%), Positives = 103/205 (50%), Gaps = 11/205 (5%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPE-KSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSI 76
+E ++V++R PG +L +S +P ++ L+ G SGSGK+TL+ L+ SG I
Sbjct: 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALV-GPSGSGKSTLVNLIPRFYDVDSGRI 59
Query: 77 NIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYL 136
I G++ S ++G+V Q + + D V + + +G P + +
Sbjct: 60 LIDGHDVRDYTLASLR----RQIGLVSQ--DVFLFNDTVAENIAYGRPGATREEVEEAAR 113
Query: 137 ALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWK 194
A N I + G D T + + LSGG ++R+A+A L++ P +LILDE + LD +
Sbjct: 114 AANAHEFIMELPEGYD-TVIGERGVKLSGGQRQRIAIARALLKDPPILILDEATSALDTE 172
Query: 195 ARADVVKLLKHLKKELTILVVSHDL 219
+ V L+ L K T V++H L
Sbjct: 173 SERLVQAALERLMKNRTTFVIAHRL 197
|
MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 234 |
| >gnl|CDD|233305 TIGR01189, ccmA, heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Score = 80.1 bits (198), Expect = 2e-18
Identities = 61/204 (29%), Positives = 85/204 (41%), Gaps = 23/204 (11%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
L R+++ + G+SF+L + G +G GKTTLL++LAGL +P SG +
Sbjct: 1 LAARNLACSRGERM--LFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVR 58
Query: 78 IRGYNNDGEPNNSPEPLPPEKVGIVFQFP---ERYFVADNVLDEVIFGWPRQSGSIQLKE 134
+G P + + P +N L F W G Q
Sbjct: 59 W-----NGTALAEQRDEPHRNILYLGHLPGLKPELSALEN-LH---F-WAAIHGGAQRTI 108
Query: 135 YLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWK 194
AL VGL G D LS G +RRLALA + L ILDEP LD
Sbjct: 109 EDALAA------VGLTGFE-DLPAAQLSAGQQRRLALARLWLSRAPLWILDEPTTALDKA 161
Query: 195 ARADVVKLLK-HLKKELTILVVSH 217
A + LL+ HL + +L+ +H
Sbjct: 162 GVALLAGLLRAHLARGGIVLLTTH 185
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c [Protein fate, Protein and peptide secretion and trafficking, Transport and binding proteins, Other]. Length = 198 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 83.3 bits (207), Expect = 2e-18
Identities = 63/219 (28%), Positives = 105/219 (47%), Gaps = 21/219 (9%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSL-PEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSI 76
LE+R +S G + L+GVS ++ P + L+ G +G+GK+TL+++L+G+ P SG I
Sbjct: 9 LELRGISKSFGGVKA--LDGVSLTVRPGEVHALL-GENGAGKSTLMKILSGVYPPDSGEI 65
Query: 77 NIRGYNNDGEPNNSPEPLPPEKVGI--VFQ----FPERYFVADNVLDEVIFGWPRQSGSI 130
I DG+P P GI V Q P VA+N+ + P + +
Sbjct: 66 LI-----DGKPVAFSSPRDALAAGIATVHQELSLVPNLS-VAENIF---LGREPTRRFGL 116
Query: 131 QLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAG 190
++ + + + +GLD D LS ++ + +A L +LILDEP A
Sbjct: 117 IDRKAMRRRARELLARLGLD-IDPDTLVGDLSIAQRQMVEIARALSFDARVLILDEPTAA 175
Query: 191 LDWKARADVVKLLKHLKKE-LTILVVSHDLKEMAALVDH 228
L K + L++ LK + + I+ +SH L E+ + D
Sbjct: 176 LTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADR 214
|
Length = 500 |
| >gnl|CDD|172734 PRK14246, PRK14246, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 81.2 bits (200), Expect = 2e-18
Identities = 64/204 (31%), Positives = 103/204 (50%), Gaps = 16/204 (7%)
Query: 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRG---YNNDGEPNNS 90
IL ++ +P S I G SGSGK+TLL++L L + I + G Y
Sbjct: 25 ILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84
Query: 91 PEPLPPEKVGIVFQFPERY---FVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWV 147
L E VG+VFQ P + + DN+ +P +S I+ K + ++ + V
Sbjct: 85 AIKLRKE-VGMVFQQPNPFPHLSIYDNI------AYPLKSHGIKEKREIKKIVEECLRKV 137
Query: 148 GLDGTSLDK--DPHS-LSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLK 204
GL D+ P S LSGG ++RL +A L P +L++DEP + +D + KL+
Sbjct: 138 GLWKEVYDRLNSPASQLSGGQQQRLTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLIT 197
Query: 205 HLKKELTILVVSHDLKEMAALVDH 228
LK E+ I++VSH+ +++A + D+
Sbjct: 198 ELKNEIAIVIVSHNPQQVARVADY 221
|
Length = 257 |
| >gnl|CDD|226617 COG4133, CcmA, ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 80.0 bits (198), Expect = 2e-18
Identities = 60/208 (28%), Positives = 90/208 (43%), Gaps = 28/208 (13%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
LE ++S + + +SF+L I G +G+GKTTLL++LAGL +P +G +
Sbjct: 3 LEAENLSCERGERT--LFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVY 60
Query: 78 IRGYNNDGEPNNSPEPL------PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQ 131
+G + + L P K E L+ + F W R GS
Sbjct: 61 WQGEPIQNVRESYHQALLYLGHQPGIK-------TEL-----TALENLHF-WQRFHGSGN 107
Query: 132 LKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGL 191
A + A+ VGL G D LS G +RR+ALA + L ILDEP L
Sbjct: 108 -----AATIWEALAQVGLAGL-EDLPVGQLSAGQQRRVALARLWLSPAPLWILDEPFTAL 161
Query: 192 DWKARADVVKLLK-HLKKELTILVVSHD 218
D + A + L+ H + +L+ +H
Sbjct: 162 DKEGVALLTALMAAHAAQGGIVLLTTHQ 189
|
Length = 209 |
| >gnl|CDD|182528 PRK10535, PRK10535, macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Score = 83.2 bits (206), Expect = 3e-18
Identities = 67/213 (31%), Positives = 109/213 (51%), Gaps = 22/213 (10%)
Query: 16 SCLEVRDV--SYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTS 73
+ LE++D+ SY QV++L G+S + I G SGSGK+TL+ +L L KPTS
Sbjct: 3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTS 62
Query: 74 GSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFV------ADNV-LDEVIFGWPRQ 126
G+ + G + ++ L E G +FQ RY + A NV + V G R+
Sbjct: 63 GTYRVAGQDVATLDADALAQLRREHFGFIFQ---RYHLLSHLTAAQNVEVPAVYAGLERK 119
Query: 127 SGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDE 186
+L L LQR +GL ++ P LSGG ++R+++A L+ +++ DE
Sbjct: 120 Q---RLLRAQEL-LQR----LGL-EDRVEYQPSQLSGGQQQRVSIARALMNGGQVILADE 170
Query: 187 PLAGLDWKARADVVKLLKHLKKE-LTILVVSHD 218
P LD + +V+ +L L+ T+++V+HD
Sbjct: 171 PTGALDSHSGEEVMAILHQLRDRGHTVIIVTHD 203
|
Length = 648 |
| >gnl|CDD|224026 COG1101, PhnK, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 80.8 bits (200), Expect = 3e-18
Identities = 58/201 (28%), Positives = 94/201 (46%), Gaps = 23/201 (11%)
Query: 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93
LNG+S + E F + G +G+GK+TLL +AG KPTSG I I G +
Sbjct: 21 ALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTK-------- 72
Query: 94 LPPEK----VGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVG- 148
K + VFQ P + ++E + + L ALN +R ++
Sbjct: 73 KSVAKRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLS--SALNERRRSSFRER 130
Query: 149 LDGTSLDKDPH------SLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKL 202
L L + LSGG ++ L+L + + P +L+LDE A LD K V++L
Sbjct: 131 LARLGLGLENRLSDRIGLLSGGQRQALSLLMATLHPPKILLLDEHTAALDPKTAEFVMEL 190
Query: 203 LKHL--KKELTILVVSHDLKE 221
+ + +LT L+V+H++++
Sbjct: 191 TAKIVEEHKLTTLMVTHNMED 211
|
Length = 263 |
| >gnl|CDD|213216 cd03249, ABC_MTABC3_MDL1_MDL2, ATP-binding cassette domain of a mitochondrial protein MTABC3 and related proteins | Back alignment and domain information |
|---|
Score = 79.9 bits (198), Expect = 4e-18
Identities = 63/216 (29%), Positives = 100/216 (46%), Gaps = 34/216 (15%)
Query: 19 EVRDVSYR-PPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
E ++VS+R P V IL G+S ++P + G SG GK+T++ LL PTSG I
Sbjct: 2 EFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEIL 61
Query: 78 IRGYNNDGEPNNSPEPLPP----EKVGIVFQFPERYF--VADNVLDEVIFGWPRQSGSIQ 131
+ DG L ++G+V Q P + +A+N+ +G P +
Sbjct: 62 L-----DGVDIRD---LNLRWLRSQIGLVSQEPVLFDGTIAENIR----YGKPDATDEEV 109
Query: 132 LKEYLALNLQRAIN--------WVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLI 183
+ N+ I VG G+ LSGG K+R+A+A L++ P +L+
Sbjct: 110 EEAAKKANIHDFIMSLPDGYDTLVGERGS-------QLSGGQKQRIAIARALLRNPKILL 162
Query: 184 LDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDL 219
LDE + LD ++ V + L K T +V++H L
Sbjct: 163 LDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRL 198
|
MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1. In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. Length = 238 |
| >gnl|CDD|182716 PRK10771, thiQ, thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 79.2 bits (196), Expect = 8e-18
Identities = 59/183 (32%), Positives = 93/183 (50%), Gaps = 27/183 (14%)
Query: 50 IFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQ----F 105
I G SG+GK+TLL L+AG P SGS+ + N P P V ++FQ F
Sbjct: 30 ILGPSGAGKSTLLNLIAGFLTPASGSLTL---NGQDHTTTPPSRRP---VSMLFQENNLF 83
Query: 106 PERYFVADNV---LDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLS 162
VA N+ L+ ++L L +G++ L + P LS
Sbjct: 84 SH-LTVAQNIGLGLNP----------GLKLNAAQREKLHAIARQMGIE-DLLARLPGQLS 131
Query: 163 GGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHL--KKELTILVVSHDLK 220
GG ++R+ALA LV+ +L+LDEP + LD R +++ L+ + +++LT+L+VSH L+
Sbjct: 132 GGQRQRVALARCLVREQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLE 191
Query: 221 EMA 223
+ A
Sbjct: 192 DAA 194
|
Length = 232 |
| >gnl|CDD|226592 COG4107, PhnK, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 9e-18
Identities = 76/242 (31%), Positives = 118/242 (48%), Gaps = 33/242 (13%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSL-PEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSI 76
L V +S + G + VSF L P + G I G SGSGKTTLL+ ++G P +G++
Sbjct: 7 LSVSGLS-KLYGPGKGCRD-VSFDLYPGEVLG-IVGESGSGKTTLLKCISGRLTPDAGTV 63
Query: 77 NIRGYNNDGEPNNSPEPLPPEKV-------GIVFQFPE---RYFVA--DNVLDEVIFGWP 124
R DG+P + E+ G V Q P R V+ N+ + ++
Sbjct: 64 TYR--MRDGQPRDLYTMSEAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIGA 121
Query: 125 RQSGSIQLKEYLALNLQRAINW---VGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDL 181
R G+I+ A +W V +D +D P + SGG ++RL +A LV P L
Sbjct: 122 RHYGNIR---------AEAQDWLEEVEIDLDRIDDLPRTFSGGMQQRLQIARNLVTRPRL 172
Query: 182 LILDEPLAGLDWKARADVVKLLKHLKKE--LTILVVSHDLKEMAALVDHSWRMDMGGFLV 239
+ +DEP GLD +A ++ LL+ L +E L +++V+HDL +A L+ + G +V
Sbjct: 173 VFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLA-VARLLADRLMVMKQGQVV 231
Query: 240 EQ 241
E
Sbjct: 232 ES 233
|
Length = 258 |
| >gnl|CDD|185067 PRK15112, PRK15112, antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Score = 79.4 bits (196), Expect = 1e-17
Identities = 74/245 (30%), Positives = 111/245 (45%), Gaps = 50/245 (20%)
Query: 18 LEVRDVS----YRP---PGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK 70
LEVR++S YR V+ + +SF+L E I G +GSGK+TL ++LAG+ +
Sbjct: 5 LEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIE 64
Query: 71 PTSGSINIRGYNNDGEPNNSPEPLP-------PEKVGIVFQFPERYFVADNVLDEVIFGW 123
PTSG + I + PL +++ ++FQ P L+
Sbjct: 65 PTSGELLIDDH-----------PLHFGDYSYRSQRIRMIFQDPS------TSLN------ 101
Query: 124 PRQSGSIQLKEYLALNL-------QRAIN----WVGLDGTSLDKDPHSLSGGYKRRLALA 172
PRQ S L L LN ++ I VGL PH L+ G K+RL LA
Sbjct: 102 PRQRISQILDFPLRLNTDLEPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQKQRLGLA 161
Query: 173 IQLVQVPDLLILDEPLAGLDWKARADVVKLLKHL--KKELTILVVSHDLKEMAALVDHSW 230
L+ P ++I DE LA LD R+ ++ L+ L K+ ++ + V+ L M + D
Sbjct: 162 RALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVL 221
Query: 231 RMDMG 235
M G
Sbjct: 222 VMHQG 226
|
Length = 267 |
| >gnl|CDD|184586 PRK14240, PRK14240, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 79.0 bits (195), Expect = 1e-17
Identities = 59/204 (28%), Positives = 105/204 (51%), Gaps = 20/204 (9%)
Query: 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGL-----SKPTSGSINIRG---YNNDGE 86
L ++ + E + G SG GK+T L+ L + S G + + G Y +D +
Sbjct: 19 LKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDID 78
Query: 87 PNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSG---SIQLKEYLALNLQRA 143
N + +VG+VFQ P + ++ D V +G PR G +L E + +L+ A
Sbjct: 79 VNQLRK-----RVGMVFQQPNPF--PMSIYDNVAYG-PRTHGIKDKKKLDEIVEKSLKGA 130
Query: 144 INWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLL 203
W + L K LSGG ++RL +A L P++L++DEP + LD + + +L+
Sbjct: 131 ALWDEVK-DRLKKSALGLSGGQQQRLCIARALAVEPEVLLMDEPTSALDPISTLKIEELI 189
Query: 204 KHLKKELTILVVSHDLKEMAALVD 227
+ LKK+ TI++V+H++++ + + D
Sbjct: 190 QELKKDYTIVIVTHNMQQASRISD 213
|
Length = 250 |
| >gnl|CDD|237422 PRK13548, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 79.0 bits (196), Expect = 1e-17
Identities = 66/219 (30%), Positives = 99/219 (45%), Gaps = 37/219 (16%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
LE R++S R G +L+ VS +L I G +G+GK+TLL+ L+G P SG +
Sbjct: 3 LEARNLSVRLGGRT--LLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVR 60
Query: 78 IRGYNNDGEPNN--SPEPLP------PEKVGIVFQFPERYFVADNVLDEVIFG-WPRQSG 128
+ +G P SP L P+ + F F V + V G P
Sbjct: 61 L-----NGRPLADWSPAELARRRAVLPQHSSLSFPFT--------VEEVVAMGRAPHGLS 107
Query: 129 SIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQV------PDLL 182
+ + A+ V L + +D LSGG ++R+ LA L Q+ P L
Sbjct: 108 RAEDDAL----VAAALAQVDLAHLA-GRDYPQLSGGEQQRVQLARVLAQLWEPDGPPRWL 162
Query: 183 ILDEPLAGLDWKARADVVKLLKHLKKE--LTILVVSHDL 219
+LDEP + LD + V++L + L E L ++VV HDL
Sbjct: 163 LLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDL 201
|
Length = 258 |
| >gnl|CDD|226631 COG4152, COG4152, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 79.3 bits (196), Expect = 2e-17
Identities = 61/207 (29%), Positives = 99/207 (47%), Gaps = 38/207 (18%)
Query: 35 LNGVSFSLPE-KSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93
++ +SF +P + FGL+ G +G+GKTT +++ GL +PT G I G E N
Sbjct: 18 VDNISFEVPPGEIFGLL-GPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQEIKNRIGY 76
Query: 94 LPPEKVGIVFQFPERYFVADNVLDEVIF-----GWPRQSGSIQLKEYLALNLQRAINWVG 148
LP E+ G+ +P+ V D++ + G P+ +L+ + L+R
Sbjct: 77 LPEER-GL---YPKM-----TVEDQLKYLAELKGMPKAEIQKKLQAW----LER------ 117
Query: 149 LDGTSLDKDP-HSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADV-VKLLKHL 206
L+ LS G ++++ ++ P+LLILDEP +GLD V V+LLK
Sbjct: 118 LEIVGKKTKKIKELSKGNQQKIQFISAVIHEPELLILDEPFSGLD-----PVNVELLKDA 172
Query: 207 KKEL-----TILVVSHDLKEMAALVDH 228
EL TI+ SH ++ + L D
Sbjct: 173 IFELKEEGATIIFSSHRMEHVEELCDR 199
|
Length = 300 |
| >gnl|CDD|183280 PRK11701, phnK, phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Score = 78.8 bits (195), Expect = 2e-17
Identities = 68/202 (33%), Positives = 100/202 (49%), Gaps = 32/202 (15%)
Query: 37 GVSFSL-PEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNN---SPE 92
VSF L P + G I G SGSGKTTLL L+ P +G ++ R DG+ + E
Sbjct: 24 DVSFDLYPGEVLG-IVGESGSGKTTLLNALSARLAPDAGEVHYRM--RDGQLRDLYALSE 80
Query: 93 P----LPPEKVGIVFQFPE---RYFVA--DNVLDEVI-FGWPRQSGSIQLKEYLALNLQR 142
L + G V Q P R V+ N+ + ++ G R G I+
Sbjct: 81 AERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGA-RHYGDIR---------AT 130
Query: 143 AINW---VGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADV 199
A +W V +D +D P + SGG ++RL +A LV P L+ +DEP GLD +A +
Sbjct: 131 AGDWLERVEIDAARIDDLPTTFSGGMQQRLQIARNLVTHPRLVFMDEPTGGLDVSVQARL 190
Query: 200 VKLLKHLKKE--LTILVVSHDL 219
+ LL+ L +E L +++V+HDL
Sbjct: 191 LDLLRGLVRELGLAVVIVTHDL 212
|
Length = 258 |
| >gnl|CDD|188208 TIGR02323, CP_lyasePhnK, phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Score = 78.7 bits (194), Expect = 2e-17
Identities = 68/218 (31%), Positives = 97/218 (44%), Gaps = 30/218 (13%)
Query: 36 NGVSFSL-PEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNN---SP 91
VSF L P + G I G SGSGK+TLL LAG P G+ G
Sbjct: 20 RDVSFDLYPGEVLG-IVGESGSGKSTLLGCLAGRLAPDHGTATYI--MRSGAELELYQLS 76
Query: 92 EP----LPPEKVGIVFQFPE-----RYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQR 142
E L + G V Q P R N+ + ++ R G+I+
Sbjct: 77 EAERRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGARHYGNIR---------AT 127
Query: 143 AINW---VGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADV 199
A +W V +D T +D P + SGG ++RL +A LV P L+ +DEP GLD +A +
Sbjct: 128 AQDWLEEVEIDPTRIDDLPRAFSGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARL 187
Query: 200 VKLLKHLKKELTI--LVVSHDLKEMAALVDHSWRMDMG 235
+ LL+ L ++L + ++V+HDL L M G
Sbjct: 188 LDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQG 225
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se [Central intermediary metabolism, Phosphorus compounds]. Length = 253 |
| >gnl|CDD|226620 COG4136, COG4136, ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 77.6 bits (191), Expect = 2e-17
Identities = 59/213 (27%), Positives = 98/213 (46%), Gaps = 19/213 (8%)
Query: 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPT---S 73
L +++VS R PG+ +L V+F++ + + G SG GK+TLL + G +
Sbjct: 2 MLCLKNVSLRLPGSC--LLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCT 59
Query: 74 GSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLK 133
G + + D P ++GI+FQ F +V ++F P +
Sbjct: 60 GELWLNEQRLDMLPAAQ------RQIGILFQDA-LLFPHLSVGQNLLFALPATLKGNARR 112
Query: 134 EYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDW 193
A+ GLDG + +DP +LSGG + R+AL L+ P L+LDEP + LD
Sbjct: 113 N----AANAALERSGLDG-AFHQDPATLSGGQRARVALLRALLAQPKALLLDEPFSRLDV 167
Query: 194 KARADVVKLLKHLKKELTI--LVVSHDLKEMAA 224
R + + + I + V+HDL+++ A
Sbjct: 168 ALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVPA 200
|
Length = 213 |
| >gnl|CDD|172761 PRK14273, PRK14273, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.5 bits (193), Expect = 2e-17
Identities = 57/207 (27%), Positives = 112/207 (54%), Gaps = 12/207 (5%)
Query: 30 TQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRG---YNNDGE 86
T LN ++ + + S + G SG GK+T L+ L ++ G I I G Y
Sbjct: 18 TDFKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEG-IKIEGNVIYEGKNI 76
Query: 87 PNNSPEPLP-PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSI---QLKEYLALNLQR 142
+N+ + L K+G+VFQ P + ++ + D + +G P+ G+ +L E + +L++
Sbjct: 77 YSNNFDILELRRKIGMVFQTPNPFLMS--IYDNISYG-PKIHGTKDKKKLDEIVEQSLKK 133
Query: 143 AINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKL 202
+ W + L+ + SLSGG ++RL +A L P+++++DEP + LD + + +L
Sbjct: 134 SALWNEVK-DKLNTNALSLSGGQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEEL 192
Query: 203 LKHLKKELTILVVSHDLKEMAALVDHS 229
+ +LK+ TI++V+H++++ + D +
Sbjct: 193 IINLKESYTIIIVTHNMQQAGRISDRT 219
|
Length = 254 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 80.5 bits (199), Expect = 2e-17
Identities = 68/208 (32%), Positives = 108/208 (51%), Gaps = 32/208 (15%)
Query: 34 ILNGVSFSL-PEKSFGLIFGRSGSGKTT----LLQLLAGLSKPTSGSINIRGYNNDGEP- 87
++ +SF+L P ++ GL+ G SGSGK+T LL+L+ + G I DG+P
Sbjct: 301 VVKNISFTLRPGETLGLV-GESGSGKSTTGLALLRLIN-----SQGEIWF-----DGQPL 349
Query: 88 -NNSPEPLPP--EKVGIVFQFPE-----RYFVADNVLDEVIFGWPRQSGSIQLKEYLALN 139
N + L P ++ +VFQ P R V + + + P S + + ++ +A
Sbjct: 350 HNLNRRQLLPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTLSAAQREQQVIA-- 407
Query: 140 LQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADV 199
+ VGLD + + P SGG ++R+A+A L+ P L+ILDEP + LD +A +
Sbjct: 408 ---VMEEVGLDPETRHRYPAEFSGGQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQI 464
Query: 200 VKLLKHL--KKELTILVVSHDLKEMAAL 225
+ LLK L K +L L +SHDL + AL
Sbjct: 465 LALLKSLQQKHQLAYLFISHDLHVVRAL 492
|
Length = 529 |
| >gnl|CDD|130355 TIGR01288, nodI, ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Score = 79.2 bits (195), Expect = 2e-17
Identities = 70/214 (32%), Positives = 111/214 (51%), Gaps = 19/214 (8%)
Query: 34 ILNGVSFSLPE-KSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPE 92
++N +SF++ + FGL+ G +G+GK+T+ ++L G+ P G I + G EP S
Sbjct: 19 VVNDLSFTIARGECFGLL-GPNGAGKSTIARMLLGMISPDRGKITVLG-----EPVPSRA 72
Query: 93 PLPPEKVGIVFQFP--ERYFVA-DNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGL 149
L +G+V QF + F +N+L +FG + +++ + L+ A L
Sbjct: 73 RLARVAIGVVPQFDNLDPEFTVRENLL---VFGRYFGMSTREIEAVIPSLLEFA----RL 125
Query: 150 DGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKH-LKK 208
+ + D LSGG KRRL LA L+ P LLILDEP GLD AR + + L+ L +
Sbjct: 126 ESKA-DVRVALLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLAR 184
Query: 209 ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242
TIL+ +H ++E L D ++ G + E R
Sbjct: 185 GKTILLTTHFMEEAERLCDRLCVLESGRKIAEGR 218
|
This protein is required for normal nodulation by nitrogen-fixing root nodule bacteria such as Mesorhizobium loti. It is a member of the family of ABC transporter ATP binding proteins and works with NodJ to export a nodulation signal molecule. This model does not recognize the highly divergent NodI from Azorhizobium caulinodans [Cellular processes, Other, Transport and binding proteins, Other]. Length = 303 |
| >gnl|CDD|131817 TIGR02770, nickel_nikD, nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Score = 77.8 bits (192), Expect = 2e-17
Identities = 66/219 (30%), Positives = 102/219 (46%), Gaps = 27/219 (12%)
Query: 37 GVSFSLPEKSFGLIFGRSGSGKTT----LLQLLAGLSKPTSGSINIRGYNNDGEPNNSPE 92
++ SL + G SGSGK+ +L LL TSG I + G P
Sbjct: 4 DLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPL------LPL 57
Query: 93 PLPPEKVGIVFQFPERYF-----VADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWV 147
+ + + Q P F + ++ ++ + R G + K+ AL L+ A+ V
Sbjct: 58 SIRGRHIATIMQNPRTAFNPLFTMGNHAIETL-----RSLGKLS-KQARALILE-ALEAV 110
Query: 148 GLDGTS--LDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKH 205
GL L K P LSGG +R+ +A+ L+ P LI DEP LD +A V+KLL+
Sbjct: 111 GLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADEPTTDLDVVNQARVLKLLRE 170
Query: 206 LKKE--LTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242
L++ IL+++HDL +A + D MD G +VE+
Sbjct: 171 LRQLFGTGILLITHDLGVVARIADEVAVMDDGR-IVERG 208
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous [Transport and binding proteins, Cations and iron carrying compounds]. Length = 230 |
| >gnl|CDD|237421 PRK13539, PRK13539, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 77.2 bits (191), Expect = 3e-17
Identities = 72/234 (30%), Positives = 107/234 (45%), Gaps = 41/234 (17%)
Query: 18 LEVRDVS-YRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSI 76
LE D++ R G +V + +G+SF+L ++ G +GSGKTTLL+L+AGL P +G+I
Sbjct: 3 LEGEDLACVR--GGRV-LFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTI 59
Query: 77 NIRGYNNDGEPNNSPEPLPPEK---VGIVFQFPERYFVADN--VLDEVIFGWPRQSGSIQ 131
+ G + D +P E +G R + V + + F W G +
Sbjct: 60 KLDGGDID-------DPDVAEACHYLG------HRNAMKPALTVAENLEF-WAAFLGGEE 105
Query: 132 LKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGL 191
L++ A+ VGL LS G KRR+ALA LV + ILDEP A L
Sbjct: 106 ------LDIAAALEAVGLAPL-AHLPFGYLSAGQKRRVALARLLVSNRPIWILDEPTAAL 158
Query: 192 DWKARADVVKLLK-HLKKELTILVVSH---DLKEMAALVDHSWRMDMGGFLVEQ 241
D A A +L++ HL + ++ +H L L D+G F E
Sbjct: 159 DAAAVALFAELIRAHLAQGGIVIAATHIPLGLPGAREL-------DLGPFAAED 205
|
Length = 207 |
| >gnl|CDD|224060 COG1137, YhbG, ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Score = 77.6 bits (192), Expect = 3e-17
Identities = 58/217 (26%), Positives = 101/217 (46%), Gaps = 25/217 (11%)
Query: 34 ILNGVSFSL-PEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPE 92
++N VS + + GL G +G+GKTT ++ GL +P SG I + +
Sbjct: 19 VVNDVSLEVNSGEIVGL-LGPNGAGKTTTFYMIVGLVRPDSGKILLDDED--------IT 69
Query: 93 PLPPEK-----VGIVFQFP---ERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAI 144
LP K +G + Q + V DN++ + + ++ L
Sbjct: 70 KLPMHKRARLGIGYLPQEASIFRKLTVEDNIM--AVLEIREKDLKKAERKEELDALLEEF 127
Query: 145 NWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLK 204
+ L D +SLSGG +RR+ +A L P ++LDEP AG+D A D+ +++K
Sbjct: 128 HITHL----RDSKAYSLSGGERRRVEIARALAANPKFILLDEPFAGVDPIAVIDIQRIIK 183
Query: 205 HLK-KELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240
HLK + + +L+ H+++E + D ++ + G L E
Sbjct: 184 HLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAE 220
|
Length = 243 |
| >gnl|CDD|184582 PRK14236, PRK14236, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 3e-17
Identities = 70/253 (27%), Positives = 123/253 (48%), Gaps = 31/253 (12%)
Query: 3 LRKKRAGGISCDYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLL 62
L +S + + LEVR+++ Q L +S +P+ G SG GK+TLL
Sbjct: 11 LPLLDVLNLSDEQTALEVRNLNLFYGDKQA--LFDISMRIPKNRVTAFIGPSGCGKSTLL 68
Query: 63 QLLAGLSK-----PTSGSINIRGYNNDGEPNNSPEPLPPE---KVGIVFQ----FPERYF 110
+ ++ G I + DG+ + E +VG+VFQ FP+
Sbjct: 69 RCFNRMNDLVDNCRIEGEIRL-----DGQNIYDKKVDVAELRRRVGMVFQRPNPFPK--- 120
Query: 111 VADNVLDEVIFGWPRQSG---SIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKR 167
++ + V++G R G L E + +L+ A W + L ++ LSGG ++
Sbjct: 121 ---SIYENVVYG-LRLQGINNRRVLDEAVERSLRGAALWDEVK-DRLHENAFGLSGGQQQ 175
Query: 168 RLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVD 227
RL +A + P++L+LDEP + LD + + +L+ LK + TI++V+H++++ A + D
Sbjct: 176 RLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSD 235
Query: 228 HSWRMDMGGFLVE 240
++ M MG LVE
Sbjct: 236 YTAFMYMGK-LVE 247
|
Length = 272 |
| >gnl|CDD|182592 PRK10619, PRK10619, histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 78.1 bits (192), Expect = 3e-17
Identities = 60/205 (29%), Positives = 105/205 (51%), Gaps = 23/205 (11%)
Query: 31 QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYN------ND 84
+ ++L GVS I G SGSGK+T L+ + L KP+ GSI + G D
Sbjct: 17 EHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKD 76
Query: 85 GE---PNNSPEPLPPEKVGIVFQFPERY---FVADNVLDEVI--FGWPRQSGSIQLKEYL 136
G+ + + L ++ +VFQ + V +NV++ I G +Q + +YL
Sbjct: 77 GQLKVADKNQLRLLRTRLTMVFQHFNLWSHMTVLENVMEAPIQVLGLSKQEARERAVKYL 136
Query: 137 ALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKAR 196
VG+D + K P LSGG ++R+++A L P++L+ DEP + LD +
Sbjct: 137 --------AKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPEVLLFDEPTSALDPELV 188
Query: 197 ADVVKLLKHLKKE-LTILVVSHDLK 220
+V+++++ L +E T++VV+H++
Sbjct: 189 GEVLRIMQQLAEEGKTMVVVTHEMG 213
|
Length = 257 |
| >gnl|CDD|183226 PRK11607, potG, putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 79.5 bits (196), Expect = 3e-17
Identities = 70/235 (29%), Positives = 116/235 (49%), Gaps = 39/235 (16%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
LE+R+++ G ++ VS ++ + + G SG GK+TLL++LAG +PT+G I
Sbjct: 20 LEIRNLTKSFDGQHA--VDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIM 77
Query: 78 IRGYNNDGEPNNSPEPLPPEKVGIVFQ----FPERYFVADNVLDEVIFG-----WPRQSG 128
+ G + P P P + ++FQ FP V + FG P+
Sbjct: 78 LDGVDLSHVP---PYQRP---INMMFQSYALFPHM-----TVEQNIAFGLKQDKLPKAEI 126
Query: 129 SIQLKEYLAL-NLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEP 187
+ ++ E L L ++Q + PH LSGG ++R+ALA L + P LL+LDEP
Sbjct: 127 ASRVNEMLGLVHMQEFAK----------RKPHQLSGGQRQRVALARSLAKRPKLLLLDEP 176
Query: 188 LAGLDWKAR----ADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFL 238
+ LD K R +VV +L+ + +T ++V+HD +E + M+ G F+
Sbjct: 177 MGALDKKLRDRMQLEVVDILERVG--VTCVMVTHDQEEAMTMAGRIAIMNRGKFV 229
|
Length = 377 |
| >gnl|CDD|131377 TIGR02324, CP_lyasePhnL, phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Score = 77.0 bits (190), Expect = 4e-17
Identities = 63/222 (28%), Positives = 101/222 (45%), Gaps = 36/222 (16%)
Query: 18 LEVRDVS-----YRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPT 72
LEV D+S ++ G ++ +L VS ++ + G SG+GK+TLL+ L P
Sbjct: 2 LEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPD 61
Query: 73 SGSINIRGYNNDGEPNNSPEPLPPE-------KVGIVFQF-------PERYFVADNVLDE 118
SG I ++G + + P E +G V QF VA+ +L+
Sbjct: 62 SGRI---LVRHEGAWVDLAQASPREVLEVRRKTIGYVSQFLRVIPRVSALEVVAEPLLE- 117
Query: 119 VIFGWPRQSGSIQLKEYLA-LNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ 177
G PR++ + +E LA LN+ + W P + SGG ++R+ +A +
Sbjct: 118 --RGVPREAARARARELLARLNIPERL-W--------HLPPATFSGGEQQRVNIARGFIA 166
Query: 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILV-VSHD 218
+L+LDEP A LD R VV+L+ K L+ + HD
Sbjct: 167 DYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHD 208
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. Length = 224 |
| >gnl|CDD|188317 TIGR03415, ABC_choXWV_ATP, choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 79.1 bits (195), Expect = 4e-17
Identities = 65/224 (29%), Positives = 104/224 (46%), Gaps = 30/224 (13%)
Query: 36 NGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP-- 93
+ S + E ++ G SGSGK+TLL+ + GL+ + GS+ ++ + + N
Sbjct: 41 HNASLDIEEGEICVLMGLSGSGKSTLLRAVNGLNPVSRGSVLVKDGDGSVDVANCDAATL 100
Query: 94 --LPPEKVGIVFQ----FPERYFVADNVLDEVIFGW-----PRQSGSIQLKEYLALNLQR 142
L +V +VFQ P R V + V FG P+ ++ E L L
Sbjct: 101 RRLRTHRVSMVFQQFALLPWR-----TVEENVAFGLEMQGMPKAERRKRVDEQLEL---- 151
Query: 143 AINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKL 202
VGL + D+ P LSGG ++R+ LA +L++DEP + LD R +
Sbjct: 152 ----VGLAQWA-DRKPGELSGGMQQRVGLARAFATEAPILLMDEPFSALDPLIRTQLQDE 206
Query: 203 LKHLKKEL--TILVVSHDLKEMAALVDHSWRMDMGGFLVEQRIP 244
L L+ +L TI+ VSHDL E + + M+ GG +++ P
Sbjct: 207 LLELQSKLKKTIVFVSHDLDEALKIGNRIAIME-GGRIIQHGTP 249
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines [Transport and binding proteins, Amino acids, peptides and amines]. Length = 382 |
| >gnl|CDD|172748 PRK14260, PRK14260, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.8 bits (191), Expect = 4e-17
Identities = 61/218 (27%), Positives = 110/218 (50%), Gaps = 16/218 (7%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
++V+D+S+ ++ + G+S + I G SG GK+T ++ L +S+ G +
Sbjct: 8 IKVKDLSFYYNTSKA--IEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISE-LEGPVK 64
Query: 78 IRGY-----NNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSG---S 129
+ G N +P + L ++G+VFQ P + ++ + + V +G R S
Sbjct: 65 VEGVVDFFGQNIYDPRININRLR-RQIGMVFQRPNPFPMS--IYENVAYGV-RISAKLPQ 120
Query: 130 IQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLA 189
L E + L+ A W + L+K LSGG ++RL +A L P +L++DEP +
Sbjct: 121 ADLDEIVESALKGAALWQEVK-DKLNKSALGLSGGQQQRLCIARALAIKPKVLLMDEPCS 179
Query: 190 GLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVD 227
LD A V +L+ L+ ELTI +V+H++++ + D
Sbjct: 180 ALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSD 217
|
Length = 259 |
| >gnl|CDD|172762 PRK14274, PRK14274, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.6 bits (191), Expect = 5e-17
Identities = 65/217 (29%), Positives = 109/217 (50%), Gaps = 21/217 (9%)
Query: 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRG---YNNDGEPNNSP 91
L ++ S+PE I G SG GK+T ++ L + + + + G YN
Sbjct: 28 LKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPN-VKLTGEMNYNGSNILKGKV 86
Query: 92 EPLPPEK-VGIVFQ----FPERYFVADNVLDEVIFGWPRQSG---SIQLKEYLALNLQRA 143
+ + K +G+VFQ FP+ F D V +G PR G +L+E + +L+
Sbjct: 87 DLVELRKNIGMVFQKGNPFPQSIF------DNVAYG-PRIHGTKNKKKLQEIVEKSLKDV 139
Query: 144 INWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLL 203
W + L SLSGG ++RL +A L PD+L++DEP + LD + + +L+
Sbjct: 140 ALWDEVK-DRLHTQALSLSGGQQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELI 198
Query: 204 KHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240
LK++ TI++V+H++++ A + D + MG LVE
Sbjct: 199 LKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGE-LVE 234
|
Length = 259 |
| >gnl|CDD|172733 PRK14245, PRK14245, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.0 bits (189), Expect = 6e-17
Identities = 62/209 (29%), Positives = 107/209 (51%), Gaps = 14/209 (6%)
Query: 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK--PTS---GSINIRGYNNDGEPNN 89
L G+S + EKS G SG GK+T L+L ++ P + G I I G N +
Sbjct: 19 LKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGVQ 78
Query: 90 SPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGL 149
E + VG+VFQ P + ++ + V +G R +G ++ ++ ++ + L
Sbjct: 79 VDEL--RKNVGMVFQRPNPF--PKSIFENVAYGL-RVNG-VKDNAFIRQRVEETLKGAAL 132
Query: 150 DGTSLDK---DPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHL 206
DK +LSGG ++RL +A + P +L++DEP + LD + A V +L+ L
Sbjct: 133 WDEVKDKLKESAFALSGGQQQRLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHEL 192
Query: 207 KKELTILVVSHDLKEMAALVDHSWRMDMG 235
KK+ TI++V+H++++ A + D + MG
Sbjct: 193 KKDYTIVIVTHNMQQAARVSDKTAFFYMG 221
|
Length = 250 |
| >gnl|CDD|130261 TIGR01193, bacteriocin_ABC, ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Score = 79.0 bits (195), Expect = 7e-17
Identities = 66/230 (28%), Positives = 109/230 (47%), Gaps = 20/230 (8%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
+ + DVSY G +IL+ +S ++ S I G SGSGK+TL +LL G + SG I
Sbjct: 474 IVINDVSYSY-GYGSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEIL 532
Query: 78 IRGYNND----GEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLK 133
+ G++ LP E Y + ++L+ ++ G ++
Sbjct: 533 LNGFSLKDIDRHTLRQFINYLPQEP----------YIFSGSILENLLLGAKENVSQDEIW 582
Query: 134 EYLAL-NLQRAINWVGLD-GTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGL 191
+ ++ I + L T L ++ S+SGG K+R+ALA L+ +LILDE + L
Sbjct: 583 AACEIAEIKDDIENMPLGYQTELSEEGSSISGGQKQRIALARALLTDSKVLILDESTSNL 642
Query: 192 DWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241
D +V L +L ++ TI+ V+H L +A D +D G ++EQ
Sbjct: 643 DTITEKKIVNNLLNL-QDKTIIFVAHRL-SVAKQSDKIIVLDHGK-IIEQ 689
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc [Protein fate, Protein and peptide secretion and trafficking, Protein fate, Protein modification and repair, Transport and binding proteins, Other]. Length = 708 |
| >gnl|CDD|132050 TIGR03005, ectoine_ehuA, ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 7e-17
Identities = 60/203 (29%), Positives = 100/203 (49%), Gaps = 27/203 (13%)
Query: 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93
+L+G++FS+ + G SGSGK+T+L++L L G I + G P +
Sbjct: 15 VLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPL 74
Query: 94 LPP---------EKVGIVFQ----FPERYFVADNVLDE--VIFGWPRQSGSIQLKEYLAL 138
+P K+G+VFQ FP + V DNV + ++ G R + E L
Sbjct: 75 VPADEKHLRQMRNKIGMVFQSFNLFPHKT-VLDNVTEAPVLVLGMARAEAEKRAMELL-- 131
Query: 139 NLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARAD 198
+ VGL D P LSGG ++R+A+A L P +++ DE + LD + +
Sbjct: 132 ------DMVGL-ADKADHMPAQLSGGQQQRVAIARALAMRPKVMLFDEVTSALDPELVGE 184
Query: 199 VVKLLKHLKKE--LTILVVSHDL 219
V+ +++ L E LT+L+V+H++
Sbjct: 185 VLNVIRRLASEHDLTMLLVTHEM 207
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. Length = 252 |
| >gnl|CDD|213236 cd03269, ABC_putative_ATPase, ATP-binding cassette domain of an uncharacterized transporter | Back alignment and domain information |
|---|
Score = 76.2 bits (188), Expect = 8e-17
Identities = 52/206 (25%), Positives = 104/206 (50%), Gaps = 28/206 (13%)
Query: 31 QVDILNGVSFSLPE-KSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNN 89
+V L+ +SFS+ + + FGL+ G +G+GKTT ++++ G+ P SG + G D N
Sbjct: 12 RVTALDDISFSVEKGEIFGLL-GPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDIAARN 70
Query: 90 SPEPLPPEKVGIVFQFPERYFVADNVLDEVIF-----GWPRQSGSIQLKEYLALNLQRAI 144
LP E+ G+ +P+ V+D++++ G ++ ++ E+L
Sbjct: 71 RIGYLPEER-GL---YPKM-----KVIDQLVYLAQLKGLKKEEARRRIDEWL-------- 113
Query: 145 NWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVK--L 202
+ L +K LS G ++++ ++ P+LLILDEP +GLD +++K +
Sbjct: 114 ERLEL-SEYANKRVEELSKGNQQKVQFIAAVIHDPELLILDEPFSGLD-PVNVELLKDVI 171
Query: 203 LKHLKKELTILVVSHDLKEMAALVDH 228
+ + T+++ +H ++ + L D
Sbjct: 172 RELARAGKTVILSTHQMELVEELCDR 197
|
This subgroup is related to the subfamily A transporters involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity. In eubacteria and archaea, the typical organization consists of one ABC and one or two integral membranes. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 210 |
| >gnl|CDD|181906 PRK09493, glnQ, glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 8e-17
Identities = 68/210 (32%), Positives = 112/210 (53%), Gaps = 23/210 (10%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
+E ++VS TQV L+ + ++ + +I G SGSGK+TLL+ + L + TSG +
Sbjct: 2 IEFKNVSKHFGPTQV--LHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLI 59
Query: 78 IRGYN-NDGEPNNSPEPLPPEKVGIVFQ----FPERYFVADNVLDEVIFGWPRQ--SGSI 130
+ G ND E L ++ G+VFQ FP L+ V+FG P + S
Sbjct: 60 VDGLKVNDP---KVDERLIRQEAGMVFQQFYLFPHL-----TALENVMFG-PLRVRGASK 110
Query: 131 QLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAG 190
+ E A L + VGL P LSGG ++R+A+A L P L++ DEP +
Sbjct: 111 EEAEKQAREL---LAKVGL-AERAHHYPSELSGGQQQRVAIARALAVKPKLMLFDEPTSA 166
Query: 191 LDWKARADVVKLLKHLKKE-LTILVVSHDL 219
LD + R +V+K+++ L +E +T+++V+H++
Sbjct: 167 LDPELRHEVLKVMQDLAEEGMTMVIVTHEI 196
|
Length = 240 |
| >gnl|CDD|172745 PRK14257, PRK14257, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 77.8 bits (191), Expect = 8e-17
Identities = 60/224 (26%), Positives = 114/224 (50%), Gaps = 14/224 (6%)
Query: 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTS 73
+ E+R+ ++ +L+ ++ + G SG GK+T L+ L L+
Sbjct: 77 HANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIE 136
Query: 74 GS-----INIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSG 128
G+ I G N + +S E ++G+VFQ P + ++ + D V +G PR +G
Sbjct: 137 GTSHEGEIYFLGTNTRSKKISSLEL--RTRIGMVFQKPTPFEMS--IFDNVAYG-PRNNG 191
Query: 129 SIQ---LKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILD 185
L++ + +L+ A W + LDK ++LSGG ++RL +A + P++L++D
Sbjct: 192 INDRKILEKIVEKSLKSAALWDEVK-DDLDKAGNALSGGQQQRLCIARAIALEPEVLLMD 250
Query: 186 EPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHS 229
EP + LD A A + +L+ LKK+ +I++V+H + + + D +
Sbjct: 251 EPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDET 294
|
Length = 329 |
| >gnl|CDD|237419 PRK13536, PRK13536, nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Score = 77.9 bits (192), Expect = 8e-17
Identities = 71/222 (31%), Positives = 114/222 (51%), Gaps = 35/222 (15%)
Query: 34 ILNGVSFSL-PEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPE 92
++NG+SF++ + FGL+ G +G+GK+T+ +++ G++ P +G I + G P +
Sbjct: 56 VVNGLSFTVASGECFGLL-GPNGAGKSTIARMILGMTSPDAGKITVLG-----VPVPARA 109
Query: 93 PLPPEKVGIVFQF----PERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVG 148
L ++G+V QF E + V +N+L +FG Y ++ R I V
Sbjct: 110 RLARARIGVVPQFDNLDLE-FTVRENLL---VFG-----------RYFGMS-TREIEAVI 153
Query: 149 ---LDGTSLDKDPHS----LSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVK 201
L+ L+ + LSGG KRRL LA L+ P LLILDEP GLD AR + +
Sbjct: 154 PSLLEFARLESKADARVSDLSGGMKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWE 213
Query: 202 LLKH-LKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242
L+ L + TIL+ +H ++E L D ++ G + E R
Sbjct: 214 RLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGR 255
|
Length = 340 |
| >gnl|CDD|184597 PRK14270, PRK14270, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.5 bits (188), Expect = 9e-17
Identities = 59/209 (28%), Positives = 107/209 (51%), Gaps = 14/209 (6%)
Query: 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK-----PTSGSINIRGYNNDGEPNN 89
LN ++ + E + G SG GK+T L+ L ++ G + + G N + +
Sbjct: 20 LNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDVD 79
Query: 90 SPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSG---SIQLKEYLALNLQRAINW 146
E ++VG+VFQ P + ++ D V +G PR G +L + + L++A W
Sbjct: 80 VVEL--RKRVGMVFQKPNPF--PMSIYDNVAYG-PRIHGIKDKKELDKIVEWALKKAALW 134
Query: 147 VGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHL 206
+ L K LSGG ++RL +A + PD++++DEP + LD + + L+ L
Sbjct: 135 DEVK-DDLKKSALKLSGGQQQRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVEL 193
Query: 207 KKELTILVVSHDLKEMAALVDHSWRMDMG 235
KKE TI++V+H++++ + + D++ MG
Sbjct: 194 KKEYTIVIVTHNMQQASRVSDYTAFFLMG 222
|
Length = 251 |
| >gnl|CDD|213184 cd03217, ABC_FeS_Assembly, ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Score = 75.3 bits (186), Expect = 1e-16
Identities = 56/209 (26%), Positives = 95/209 (45%), Gaps = 56/209 (26%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLS--KPTSGS 75
LE++D+ G + IL GV+ ++ + + G +GSGK+TL + + G + T G
Sbjct: 1 LEIKDLHVSVGGKE--ILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGE 58
Query: 76 INIRGYN-NDGEPNNSPEPLPPEK-----VGIVFQFPERYFVADNVLDEVIFGWPRQSGS 129
I +G + D LPPE+ + + FQ+P G
Sbjct: 59 ILFKGEDITD---------LPPEERARLGIFLAFQYPPEI-----------------PG- 91
Query: 130 IQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLA 189
++ ++L R +N G SGG K+R + L+ PDL ILDEP +
Sbjct: 92 VKNADFL-----RYVN-EGF------------SGGEKKRNEILQLLLLEPDLAILDEPDS 133
Query: 190 GLDWKARADVVKLLKHLKKE-LTILVVSH 217
GLD A V +++ L++E ++L+++H
Sbjct: 134 GLDIDALRLVAEVINKLREEGKSVLIITH 162
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multi-protein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. Length = 200 |
| >gnl|CDD|184584 PRK14238, PRK14238, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.8 bits (189), Expect = 1e-16
Identities = 63/202 (31%), Positives = 107/202 (52%), Gaps = 16/202 (7%)
Query: 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGL-----SKPTSGSINIRGYNNDGEPNN 89
L ++ + E I G SG GK+T ++ L + S T+G I R N + +
Sbjct: 40 LKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRD-QNIFDKSY 98
Query: 90 SPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQ----LKEYLALNLQRAIN 145
S E L VG+VFQ P + ++ D V +G P+ G I+ L E + +L+ A
Sbjct: 99 SVEELR-TNVGMVFQKPNPF--PKSIYDNVTYG-PKIHG-IKDKKTLDEIVEKSLRGAAI 153
Query: 146 WVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKH 205
W L L + + LSGG ++RL +A L PD++++DEP + LD + V +L++
Sbjct: 154 WDELK-DRLHDNAYGLSGGQQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQE 212
Query: 206 LKKELTILVVSHDLKEMAALVD 227
LKK+ +I++V+H++++ A + D
Sbjct: 213 LKKDYSIIIVTHNMQQAARISD 234
|
Length = 271 |
| >gnl|CDD|226646 COG4178, COG4178, ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 78.1 bits (193), Expect = 1e-16
Identities = 58/206 (28%), Positives = 95/206 (46%), Gaps = 32/206 (15%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
+ + ++S R P Q +L+ ++F + LI G SG+GKT+LL+ LAGL SG I+
Sbjct: 393 ITLENLSLRTPDGQT-LLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRIS 451
Query: 78 IRGYNNDGEPNNSPEPLPPEKVGIVFQFPER-YFVADNVLDEVIFGWPRQSGSIQLKEYL 136
+ P ++F P+R Y + + + + P + E +
Sbjct: 452 M-----------------PADSALLF-LPQRPYLPQGTLREALCY--PNAAPDFSDAELV 491
Query: 137 ALNLQRAINWVGLD--GTSLDK-DP--HSLSGGYKRRLALAIQLVQVPDLLILDEPLAGL 191
A ++ VGL LD+ D LSGG ++RLA A L+ P + LDE + L
Sbjct: 492 A-----VLHKVGLGDLAERLDEEDRWDRVLSGGEQQRLAFARLLLHKPKWVFLDEATSAL 546
Query: 192 DWKARADVVKLLKHLKKELTILVVSH 217
D + + +LLK + T++ V H
Sbjct: 547 DEETEDRLYQLLKEELPDATVISVGH 572
|
Length = 604 |
| >gnl|CDD|172750 PRK14262, PRK14262, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 76.1 bits (187), Expect = 2e-16
Identities = 60/206 (29%), Positives = 104/206 (50%), Gaps = 20/206 (9%)
Query: 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK-----PTSGSINIRG---YNNDG 85
+ V+ + + I G SG GKTTLL+ + ++ G I +G Y+
Sbjct: 18 AVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQL 77
Query: 86 EPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSI---QLKEYLALNLQR 142
+ +KVG+VFQ P + ++ + D V FG PR G +L + +L++
Sbjct: 78 DVT-----EYRKKVGMVFQKPTPFPMS--IYDNVAFG-PRIHGVKSKHKLDRIVEESLKK 129
Query: 143 AINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKL 202
A W + + L+K LSGG ++RL +A L P++++LDEP + LD A + KL
Sbjct: 130 AALWDEVK-SELNKPGTRLSGGQQQRLCIARALAVEPEVILLDEPTSALDPIATQRIEKL 188
Query: 203 LKHLKKELTILVVSHDLKEMAALVDH 228
L+ L + TI++V+H++ + + D+
Sbjct: 189 LEELSENYTIVIVTHNIGQAIRIADY 214
|
Length = 250 |
| >gnl|CDD|132561 TIGR03522, GldA_ABC_ATP, gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Score = 76.7 bits (189), Expect = 2e-16
Identities = 61/215 (28%), Positives = 106/215 (49%), Gaps = 22/215 (10%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
+ V ++ + GTQ + L+ VSF + G +G+GK+T ++++ G P SGS+
Sbjct: 3 IRVSSLT-KLYGTQ-NALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQ 60
Query: 78 IRGYN---NDGEPNNSPEPLPPEKVGIVFQFPERY--FVADNVLDEVIFGWPRQSGSIQL 132
+ G + N E + LP + + Y F+A I+G Q ++
Sbjct: 61 VCGEDVLQNPKEVQRNIGYLPEHNPLYLDMYVREYLQFIAG------IYGMKGQLLKQRV 114
Query: 133 KEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLD 192
+E + L VGL K LS GY++R+ LA L+ P +LILDEP GLD
Sbjct: 115 EEMIEL--------VGLRPEQ-HKKIGQLSKGYRQRVGLAQALIHDPKVLILDEPTTGLD 165
Query: 193 WKARADVVKLLKHLKKELTILVVSHDLKEMAALVD 227
++ ++K++ K+ TI++ +H ++E+ A+ D
Sbjct: 166 PNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICD 200
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. Length = 301 |
| >gnl|CDD|182569 PRK10584, PRK10584, putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Score = 75.2 bits (185), Expect = 2e-16
Identities = 67/209 (32%), Positives = 100/209 (47%), Gaps = 18/209 (8%)
Query: 31 QVDILNGVSFSL-PEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNN 89
++ IL GV + ++ LI G SGSGK+TLL +LAGL +SG +++ G
Sbjct: 22 ELSILTGVELVVKRGETIALI-GESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEE 80
Query: 90 SPEPLPPEKVGIVFQ----FPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAIN 145
+ L + VG VFQ P + + L ++ G + K L
Sbjct: 81 ARAKLRAKHVGFVFQSFMLIPTLNALENVELPALLRGESSRQSRNGAKALLEQ------- 133
Query: 146 WVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKH 205
+GL G LD P LSGG ++R+ALA PD+L DEP LD + + LL
Sbjct: 134 -LGL-GKRLDHLPAQLSGGEQQRVALARAFNGRPDVLFADEPTGNLDRQTGDKIADLLFS 191
Query: 206 LKKEL--TILVVSHDLKEMAALVDHSWRM 232
L +E T+++V+HD ++AA D R+
Sbjct: 192 LNREHGTTLILVTHD-LQLAARCDRRLRL 219
|
Length = 228 |
| >gnl|CDD|172732 PRK14244, PRK14244, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.6 bits (186), Expect = 2e-16
Identities = 59/202 (29%), Positives = 101/202 (50%), Gaps = 13/202 (6%)
Query: 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK-----PTSGSINIRGYNNDGEPN 88
IL ++ + ++ G SG GK+T L+ ++ G ++I G D
Sbjct: 20 ILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGI--DVYSV 77
Query: 89 NSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVG 148
++ L KVG+VFQ P + ++ D V +G P+ G + K+ L +++++ VG
Sbjct: 78 DTNVVLLRAKVGMVFQKPNPF--PKSIYDNVAYG-PKLHGLAKNKKKLDEIVEKSLTSVG 134
Query: 149 L---DGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKH 205
L G L LSGG ++RL +A + P +L++DEP + LD A + L++
Sbjct: 135 LWEELGDRLKDSAFELSGGQQQRLCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQE 194
Query: 206 LKKELTILVVSHDLKEMAALVD 227
LKK TI+VV+H +K+ + D
Sbjct: 195 LKKNFTIIVVTHSMKQAKKVSD 216
|
Length = 251 |
| >gnl|CDD|172744 PRK14256, PRK14256, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.4 bits (185), Expect = 3e-16
Identities = 63/214 (29%), Positives = 114/214 (53%), Gaps = 20/214 (9%)
Query: 38 VSFSLPEKSFGLIFGRSGSGKTTLLQLLAGL-----SKPTSGSINIRG---YNNDGEPNN 89
VS PE S I G SG GK+T+L+ + + S +G I + Y+ +P +
Sbjct: 23 VSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVDPVS 82
Query: 90 SPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSI---QLKEYLALNLQRAINW 146
+VG+VFQ P F A ++ D VI G+ + +G + + E + +L+R W
Sbjct: 83 IRR-----RVGMVFQKPNP-FPAMSIYDNVIAGY-KLNGRVNRSEADEIVESSLKRVALW 135
Query: 147 VGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHL 206
+ L + LSGG ++RL +A + P+++++DEP + LD + + +L++ L
Sbjct: 136 DEVK-DRLKSNAMELSGGQQQRLCIARTIAVKPEVILMDEPASALDPISTLKIEELIEEL 194
Query: 207 KKELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240
K++ TI++V+H++++ A + D++ MG LVE
Sbjct: 195 KEKYTIIIVTHNMQQAARVSDYTAFFYMGD-LVE 227
|
Length = 252 |
| >gnl|CDD|213234 cd03267, ABC_NatA_like, ATP-binding cassette domain of an uncharacterized transporter similar in sequence to NatA | Back alignment and domain information |
|---|
Score = 74.7 bits (184), Expect = 4e-16
Identities = 63/212 (29%), Positives = 105/212 (49%), Gaps = 25/212 (11%)
Query: 25 YRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNND 84
++ +V+ L G+SF++ + G +G+GKTT L++L+GL +PTSG + + G
Sbjct: 27 FKRKYREVEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGL--- 83
Query: 85 GEP-NNSPEPLPPEKVGIVF-QFPERYF---VADNV-LDEVIFGWPRQSGSIQLKEYL-A 137
P + L ++G+VF Q + ++ V D+ L I+ P +L E
Sbjct: 84 -VPWKRRKKFL--RRIGVVFGQKTQLWWDLPVIDSFYLLAAIYDLPPARFKKRLDELSEL 140
Query: 138 LNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARA 197
L+L+ LD LS G + R +A L+ P++L LDEP GLD A+
Sbjct: 141 LDLEEL----------LDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGLDVVAQE 190
Query: 198 DVVKLLKHLKKE--LTILVVSHDLKEMAALVD 227
++ LK +E T+L+ SH +K++ AL
Sbjct: 191 NIRNFLKEYNRERGTTVLLTSHYMKDIEALAR 222
|
NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake. NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the proton-motive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunorubicin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single integral membrane protein. Length = 236 |
| >gnl|CDD|172739 PRK14251, PRK14251, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.7 bits (183), Expect = 5e-16
Identities = 58/217 (26%), Positives = 111/217 (51%), Gaps = 15/217 (6%)
Query: 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK-----PTSGSINIRGYNNDGE 86
+ L+G+S EK + G SG GK+T L+ L ++ +G I G N G
Sbjct: 17 YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGS 76
Query: 87 PNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINW 146
+ E ++VG+VFQ P + + V D V +G + ++ KE + ++ ++
Sbjct: 77 KMDLVEL--RKEVGMVFQQPTPFPFS--VYDNVAYGL--KIAGVKDKELIDQRVEESLKQ 130
Query: 147 VGL---DGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLL 203
+ +LD++ + SGG ++R+ +A L P +++LDEP + LD + +++ + L
Sbjct: 131 AAIWKETKDNLDRNAQAFSGGQQQRICIARALAVRPKVVLLDEPTSALDPISSSEIEETL 190
Query: 204 KHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240
LK + T ++V+H+L++ + D + + M G L+E
Sbjct: 191 MELKHQYTFIMVTHNLQQAGRISDQTAFL-MNGDLIE 226
|
Length = 251 |
| >gnl|CDD|213182 cd03215, ABC_Carb_Monos_II, Second domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 73.2 bits (181), Expect = 5e-16
Identities = 60/215 (27%), Positives = 94/215 (43%), Gaps = 50/215 (23%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIF---GRSGSGKTTLLQLLAGLSKPTSG 74
LEVR +S + + VSF + G I G G+G+T L + L GL P SG
Sbjct: 5 LEVRGLSVK------GAVRDVSFEVRA---GEIVGIAGLVGNGQTELAEALFGLRPPASG 55
Query: 75 SINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKE 134
I + DG+P P + GI + V ++ E + S + E
Sbjct: 56 EITL-----DGKPVTRRSPRDAIRAGIAY-------VPEDRKREGLV--LDLS----VAE 97
Query: 135 YLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWK 194
+AL LSGG ++++ LA L + P +LILDEP G+D
Sbjct: 98 NIAL-------------------SSLLSGGNQQKVVLARWLARDPRVLILDEPTRGVDVG 138
Query: 195 ARADVVKLLKHLKKE-LTILVVSHDLKEMAALVDH 228
A+A++ +L++ L +L++S +L E+ L D
Sbjct: 139 AKAEIYRLIRELADAGKAVLLISSELDELLGLCDR 173
|
This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 182 |
| >gnl|CDD|237646 PRK14237, PRK14237, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.8 bits (184), Expect = 5e-16
Identities = 58/207 (28%), Positives = 101/207 (48%), Gaps = 22/207 (10%)
Query: 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP-----TSGSINIRGYNNDGEPNN 89
+ G+ + + G SGSGK+T L+ L ++ +G I RG + N
Sbjct: 36 IKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDI-----N 90
Query: 90 SPEPLPPE---KVGIVFQFPERYFVADNVLDEVIFGWPR--QSGSIQLKEYLALNLQRAI 144
E E +G+VFQ P + A ++ + + F R L E + +L++A
Sbjct: 91 RKEINVYEMRKHIGMVFQRPNPF--AKSIYENITFALERAGVKDKKVLDEIVETSLKQAA 148
Query: 145 NW--VGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKL 202
W V D L K +LSGG ++RL +A + PD+L++DEP + LD + + +
Sbjct: 149 LWDQVKDD---LHKSALTLSGGQQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEET 205
Query: 203 LKHLKKELTILVVSHDLKEMAALVDHS 229
+ LKK TI++V+H++++ A D++
Sbjct: 206 MFELKKNYTIIIVTHNMQQAARASDYT 232
|
Length = 267 |
| >gnl|CDD|172740 PRK14252, PRK14252, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.0 bits (184), Expect = 5e-16
Identities = 70/244 (28%), Positives = 122/244 (50%), Gaps = 26/244 (10%)
Query: 6 KRAGGISCDYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLL 65
K AG +S EV +++ G Q L ++ + EK + G SG GK+T L+
Sbjct: 5 KPAGDVSPTQQKSEVNKLNFYYGGYQA--LKNINMMVHEKQVTALIGPSGCGKSTFLRCF 62
Query: 66 AGLSKPTSGSINIRGYNNDGE----PNN----SPEPLPPE---KVGIVFQFPERYFVADN 114
+ G+ + +GE P+N SPE P E ++ +VFQ P + +
Sbjct: 63 NRMHDLYPGN------HYEGEIILHPDNVNILSPEVDPIEVRMRISMVFQKPNPF--PKS 114
Query: 115 VLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKD---PHSLSGGYKRRLAL 171
+ + V +G R G ++ + L ++ A+ L D+ +LSGG ++RL +
Sbjct: 115 IFENVAYGL-RIRG-VKRRSILEERVENALRNAALWDEVKDRLGDLAFNLSGGQQQRLCI 172
Query: 172 AIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWR 231
A L P++L+ DEP + LD A A + +L+ LK ++TIL+V+H++++ A + D++
Sbjct: 173 ARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAY 232
Query: 232 MDMG 235
M MG
Sbjct: 233 MYMG 236
|
Length = 265 |
| >gnl|CDD|182893 PRK11000, PRK11000, maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 75.8 bits (187), Expect = 5e-16
Identities = 66/215 (30%), Positives = 100/215 (46%), Gaps = 47/215 (21%)
Query: 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYN-NDGEPNNS 90
V I ++ + E F + G SG GK+TLL+++AGL TSG + I ND
Sbjct: 16 VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMND------ 69
Query: 91 PEPLPPEK--VGIVFQ----FPERYFVADNVLDEVIFGWP--------RQSGSIQLKEYL 136
+PP + VG+VFQ +P +V + + FG Q+ E L
Sbjct: 70 ---VPPAERGVGMVFQSYALYPHL-----SVAENMSFGLKLAGAKKEEINQRVNQVAEVL 121
Query: 137 ALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDW--- 193
L LD+ P +LSGG ++R+A+ LV P + +LDEPL+ LD
Sbjct: 122 QL------------AHLLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALR 169
Query: 194 -KARADVVKLLKHLKKELTILVVSHDLKEMAALVD 227
+ R ++ +L K L + T++ V+HD E L D
Sbjct: 170 VQMRIEISRLHKRLGR--TMIYVTHDQVEAMTLAD 202
|
Length = 369 |
| >gnl|CDD|172730 PRK14242, PRK14242, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.4 bits (183), Expect = 6e-16
Identities = 63/212 (29%), Positives = 108/212 (50%), Gaps = 11/212 (5%)
Query: 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94
L+ +S + + G SG GK+T L+ L ++ G+ DGE P
Sbjct: 22 LHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPHVD 81
Query: 95 PPE---KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG 151
E +VG+VFQ P + ++ + V +G R +G ++ K YLA ++R++ L
Sbjct: 82 VVELRRRVGMVFQKPNPF--PKSIFENVAYGL-RVNG-VKDKAYLAERVERSLRHAALWD 137
Query: 152 TSLDKDPHS---LSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK 208
D+ S LSGG ++RL +A L P++L++DEP + LD A + +L+ LK
Sbjct: 138 EVKDRLHESALGLSGGQQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKA 197
Query: 209 ELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240
TI++V+H++++ A + D + MG L+E
Sbjct: 198 RYTIIIVTHNMQQAARVSDVTAFFYMGK-LIE 228
|
Length = 253 |
| >gnl|CDD|172756 PRK14268, PRK14268, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 74.7 bits (183), Expect = 6e-16
Identities = 64/210 (30%), Positives = 109/210 (51%), Gaps = 17/210 (8%)
Query: 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK-----PTSGSINIRGYNNDGEPNN 89
L VS +P+ S + G SG GK+T ++ L ++ G ++I G + +
Sbjct: 28 LKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPDVD 87
Query: 90 SPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQ--LKEYLALNLQRAINWV 147
E + VG+VFQ P + ++ + D V +G PR G+ + L + L+ A W
Sbjct: 88 VVEL--RKNVGMVFQKPNPFPMS--IYDNVAYG-PRIHGANKKDLDGVVENALRSAALW- 141
Query: 148 GLDGTS--LDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKH 205
D TS L SLSGG ++RL +A L P +++ DEP + LD + A + L+ +
Sbjct: 142 --DETSDRLKSPALSLSGGQQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMN 199
Query: 206 LKKELTILVVSHDLKEMAALVDHSWRMDMG 235
LKK+ TI++V+H++++ A + D++ MG
Sbjct: 200 LKKDYTIVIVTHNMQQAARISDYTGFFLMG 229
|
Length = 258 |
| >gnl|CDD|182829 PRK10908, PRK10908, cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Score = 73.8 bits (181), Expect = 6e-16
Identities = 59/194 (30%), Positives = 101/194 (52%), Gaps = 23/194 (11%)
Query: 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94
L GV+F + + G SG+GK+TLL+L+ G+ +P++G I G+ + N P
Sbjct: 18 LQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGH-DITRLKNREVPF 76
Query: 95 PPEKVGIVFQ----FPERYFVADNV-LDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGL 149
++G++FQ +R V DNV + +I G SG + + + A++ VGL
Sbjct: 77 LRRQIGMIFQDHHLLMDRT-VYDNVAIPLIIAG---ASG-----DDIRRRVSAALDKVGL 127
Query: 150 DGTSLDKD---PHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHL 206
LDK P LSGG ++R+ +A +V P +L+ DEP LD +++L +
Sbjct: 128 ----LDKAKNFPIQLSGGEQQRVGIARAVVNKPAVLLADEPTGNLDDALSEGILRLFEEF 183
Query: 207 KK-ELTILVVSHDL 219
+ +T+L+ +HD+
Sbjct: 184 NRVGVTVLMATHDI 197
|
Length = 222 |
| >gnl|CDD|163585 TIGR03873, F420-0_ABC_ATP, proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 74.1 bits (182), Expect = 8e-16
Identities = 66/234 (28%), Positives = 111/234 (47%), Gaps = 38/234 (16%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
L + VS+ G I++GV + P S + G +GSGK+TLL+LLAG +P +G+++
Sbjct: 2 LRLSRVSWSAGG--RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVD 59
Query: 78 IRGYNNDGEP--------------NNSPEPLPPEKVGIVFQFPER-YFVADNVLDEVIFG 122
+ G + G +++ PL V + + P R + D+ D +
Sbjct: 60 LAGVDLHGLSRRARARRVALVEQDSDTAVPLTVRDVVALGRIPHRSLWAGDSPHDAAV-- 117
Query: 123 WPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLL 182
+ RA+ L + D+D +LSGG ++R+ +A L Q P LL
Sbjct: 118 -----------------VDRALARTELSHLA-DRDMSTLSGGERQRVHVARALAQEPKLL 159
Query: 183 ILDEPLAGLDWKARADVVKLLKHLKKE-LTILVVSHDLKEMAALVDHSWRMDMG 235
+LDEP LD +A+ + + L++ L +T++ HDL A+ DH +D G
Sbjct: 160 LLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGG 213
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. Length = 256 |
| >gnl|CDD|236870 PRK11174, PRK11174, cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Score = 75.7 bits (187), Expect = 1e-15
Identities = 70/213 (32%), Positives = 98/213 (46%), Gaps = 26/213 (12%)
Query: 38 VSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97
++F+LP + G SG+GKT+LL L G P GS+ I G E +
Sbjct: 369 LNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGI----ELRELDPESWRK 423
Query: 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWV---------G 148
+ V Q P+ + D V+ G P S E L L+ A WV G
Sbjct: 424 HLSWVGQNPQ--LPHGTLRDNVLLGNPDAS-----DEQLQQALENA--WVSEFLPLLPQG 474
Query: 149 LDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK 208
LD T + LS G +RLALA L+Q LL+LDEP A LD + V++ L +
Sbjct: 475 LD-TPIGDQAAGLSVGQAQRLALARALLQPCQLLLLDEPTASLDAHSEQLVMQALNAASR 533
Query: 209 ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241
T L+V+H L+++A D W M G +V+Q
Sbjct: 534 RQTTLMVTHQLEDLAQ-WDQIWVMQ-DGQIVQQ 564
|
Length = 588 |
| >gnl|CDD|237650 PRK14265, PRK14265, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 73.9 bits (181), Expect = 1e-15
Identities = 57/196 (29%), Positives = 99/196 (50%), Gaps = 12/196 (6%)
Query: 38 VSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK-----PTSGSINIRGYNNDGEPNNSPE 92
V +P K G SG GK+TLL+ ++ G + R N NS +
Sbjct: 39 VHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQINSVK 98
Query: 93 PLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSG-SIQLKEYLALNLQRAINWVGLDG 151
+VG+VFQ P + ++ + + F PR +G L E + +L+RA W +
Sbjct: 99 L--RRQVGMVFQRPNPF--PKSIYENIAFA-PRANGYKGNLDELVEDSLRRAAIWEEVK- 152
Query: 152 TSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELT 211
L + +LSGG ++RL +A + PD+L++DEP + LD + V +L LK++ T
Sbjct: 153 DKLKEKGTALSGGQQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYT 212
Query: 212 ILVVSHDLKEMAALVD 227
I++V+H++++ + + D
Sbjct: 213 IIMVTHNMQQASRVAD 228
|
Length = 274 |
| >gnl|CDD|184588 PRK14243, PRK14243, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.9 bits (179), Expect = 2e-15
Identities = 53/202 (26%), Positives = 102/202 (50%), Gaps = 18/202 (8%)
Query: 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGL-----SKPTSGSINIRGYNNDGEPNN 89
+ V +P+ G SG GK+T+L+ L G + G N
Sbjct: 26 VKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNL-----Y 80
Query: 90 SPEPLPPE---KVGIVFQFPERYFVADNVLDEVIFGWPRQSG-SIQLKEYLALNLQRAIN 145
+P+ P E ++G+VFQ P + ++ D + +G R +G + E + +L++A
Sbjct: 81 APDVDPVEVRRRIGMVFQKPNPF--PKSIYDNIAYG-ARINGYKGDMDELVERSLRQAAL 137
Query: 146 WVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKH 205
W + L + SLSGG ++RL +A + P+++++DEP + LD + + +L+
Sbjct: 138 WDEVK-DKLKQSGLSLSGGQQQRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHE 196
Query: 206 LKKELTILVVSHDLKEMAALVD 227
LK++ TI++V+H++++ A + D
Sbjct: 197 LKEQYTIIIVTHNMQQAARVSD 218
|
Length = 264 |
| >gnl|CDD|172760 PRK14272, PRK14272, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.7 bits (178), Expect = 3e-15
Identities = 65/211 (30%), Positives = 107/211 (50%), Gaps = 10/211 (4%)
Query: 37 GVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP- 95
V+ + + + G SG GKTT L+ + + T G+ DG+ P P
Sbjct: 22 NVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRVDPV 81
Query: 96 --PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTS 153
+VG+VFQ P F +V D V+ G + +G I+ +++L +R++ L
Sbjct: 82 AMRRRVGMVFQKPNP-FPTMSVFDNVVAGL-KLAG-IRDRDHLMEVAERSLRGAALWDEV 138
Query: 154 LD--KDPHS-LSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKEL 210
D K P + LSGG ++RL +A L P++L++DEP + LD + A + L+ LKK
Sbjct: 139 KDRLKTPATGLSGGQQQRLCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVT 198
Query: 211 TILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241
TI++V+H++ + AA V + + G LVE
Sbjct: 199 TIIIVTHNMHQ-AARVSDTTSFFLVGDLVEH 228
|
Length = 252 |
| >gnl|CDD|213217 cd03250, ABCC_MRP_domain1, ATP-binding cassette domain 1 of multidrug resistance-associated protein, subfamily C | Back alignment and domain information |
|---|
Score = 71.3 bits (176), Expect = 3e-15
Identities = 50/224 (22%), Positives = 88/224 (39%), Gaps = 62/224 (27%)
Query: 18 LEVRDVSYR---PPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSG 74
+ V D S+ L ++ +P+ I G GSGK++LL L G + SG
Sbjct: 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSG 60
Query: 75 SINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKE 134
S+++ G + V Q P + + + ++FG K
Sbjct: 61 SVSVPG-----------------SIAYVSQEP--WIQNGTIRENILFG----------KP 91
Query: 135 YLALNLQRAINWVGLDGTSLDKD----PH-----------SLSGGYKRRLALAIQLVQVP 179
+ ++ I +L+ D P +LSGG K+R++LA +
Sbjct: 92 FDEERYEKVI-----KACALEPDLEILPDGDLTEIGEKGINLSGGQKQRISLARAVYSDA 146
Query: 180 DLLILDEPLAGLDWKARADVVK------LLKHLKKELTILVVSH 217
D+ +LD+PL+ +D A V + +L L T ++V+H
Sbjct: 147 DIYLLDDPLSAVD----AHVGRHIFENCILGLLLNNKTRILVTH 186
|
This subfamily is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 204 |
| >gnl|CDD|172743 PRK14255, PRK14255, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.3 bits (177), Expect = 4e-15
Identities = 57/203 (28%), Positives = 103/203 (50%), Gaps = 14/203 (6%)
Query: 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGL-----SKPTSGSINIRGYNNDGEPNN 89
L G+ + + G SG GK+T L+ L + +G++++RG N PN
Sbjct: 21 LKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRG-QNIYAPNE 79
Query: 90 SPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQ---LKEYLALNLQRAINW 146
L + VG+VFQ P + + + + VI+G R +G L E + +L++A W
Sbjct: 80 DVVQLRKQ-VGMVFQQPNPFPFS--IYENVIYGL-RLAGVKDKAVLDEAVETSLKQAAIW 135
Query: 147 VGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHL 206
+ L + SLSGG ++R+ +A L PD+++LDEP + LD + + +L L
Sbjct: 136 DEVK-DHLHESALSLSGGQQQRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLEL 194
Query: 207 KKELTILVVSHDLKEMAALVDHS 229
+ + TI++V+H + + + + D +
Sbjct: 195 RDQYTIILVTHSMHQASRISDKT 217
|
Length = 252 |
| >gnl|CDD|182221 PRK10070, PRK10070, glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 73.5 bits (180), Expect = 4e-15
Identities = 64/203 (31%), Positives = 99/203 (48%), Gaps = 15/203 (7%)
Query: 39 SFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEK 98
S ++ E +I G SGSGK+T+++LL L +PT G + I G + + + +K
Sbjct: 48 SLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTRGQVLIDGVDIAKISDAELREVRRKK 107
Query: 99 VGIVFQ----FPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSL 154
+ +VFQ P VLD FG + + + AL+ A+ VGL+ +
Sbjct: 108 IAMVFQSFALMPHM-----TVLDNTAFGMELAGINAEERREKALD---ALRQVGLENYA- 158
Query: 155 DKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHL--KKELTI 212
P LSGG ++R+ LA L PD+L++DE + LD R ++ L L K + TI
Sbjct: 159 HSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTI 218
Query: 213 LVVSHDLKEMAALVDHSWRMDMG 235
+ +SHDL E + D M G
Sbjct: 219 VFISHDLDEAMRIGDRIAIMQNG 241
|
Length = 400 |
| >gnl|CDD|224053 COG1129, MglA, ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Score = 73.3 bits (181), Expect = 5e-15
Identities = 67/234 (28%), Positives = 109/234 (46%), Gaps = 36/234 (15%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSG---SGKTTLLQLLAGLSKPTSG 74
LEVR++S + VSF++ G I G +G +G+T L + L G +SG
Sbjct: 264 LEVRNLSGG------GKVRDVSFTVRA---GEILGIAGLVGAGRTELARALFGARPASSG 314
Query: 75 SINIRGYNNDGEP--NNSPEP-------LPPE---KVGIVFQFPERYFVADNVLDEVIFG 122
I + DG+P SP PE G+V +A+N+ +
Sbjct: 315 EILL-----DGKPVRIRSPRDAIKAGIAYVPEDRKSEGLVLDMS----IAENITLASLRR 365
Query: 123 WPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLL 182
+ R+ + KE +R I + + S ++ +LSGG ++++ LA L P +L
Sbjct: 366 FSRRGLIDRRKE--RALAERYIRRLRIKTPSPEQPIGTLSGGNQQKVVLARWLATDPKVL 423
Query: 183 ILDEPLAGLDWKARADVVKLLKHLKKE-LTILVVSHDLKEMAALVDHSWRMDMG 235
ILDEP G+D A+A++ +L++ L E IL++S +L E+ L D M G
Sbjct: 424 ILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREG 477
|
Length = 500 |
| >gnl|CDD|223473 COG0396, sufC, Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 71.8 bits (177), Expect = 5e-15
Identities = 59/209 (28%), Positives = 94/209 (44%), Gaps = 19/209 (9%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLS--KPTSGS 75
LE++D+ G + IL GV+ ++ E I G +GSGK+TL + G + T G
Sbjct: 4 LEIKDLHVEVEGKKE-ILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGE 62
Query: 76 INIRGYNNDGEPNNSPEPLPPE---KVGI--VFQFPERYFVADNVLDEVIFGWPRQSGSI 130
I DGE L P+ + GI FQ+P D + + G+
Sbjct: 63 ILF-----DGEDILE---LSPDERARAGIFLAFQYPVE-IPGVTNSDFLRAAMNARRGAR 113
Query: 131 QLKEYLALNLQRAINWVGLDGTSLDKDPH-SLSGGYKRRLALAIQLVQVPDLLILDEPLA 189
+ L+ +GLD L++ + SGG K+R + L+ P L ILDEP +
Sbjct: 114 GILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEILQLLLLEPKLAILDEPDS 173
Query: 190 GLDWKARADVVKLLKHLK-KELTILVVSH 217
GLD A V + + L+ + +L+++H
Sbjct: 174 GLDIDALKIVAEGINALREEGRGVLIITH 202
|
Length = 251 |
| >gnl|CDD|172759 PRK14271, PRK14271, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 72.4 bits (177), Expect = 5e-15
Identities = 64/219 (29%), Positives = 109/219 (49%), Gaps = 22/219 (10%)
Query: 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEP------ 87
+L+ VS P ++ + G +GSGKTT L+ L ++ SG Y G+
Sbjct: 36 VLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSG------YRYSGDVLLGGRS 89
Query: 88 -NNSPEPLP-PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAIN 145
N + L +VG++FQ P + ++ ++D V+ G R + KE+ + R +
Sbjct: 90 IFNYRDVLEFRRRVGMLFQRPNPFPMS--IMDNVLAG-VRAHKLVPRKEFRGVAQAR-LT 145
Query: 146 WVGLDGTSLDK---DPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKL 202
VGL D+ P LSGG ++ L LA L P++L+LDEP + LD + +
Sbjct: 146 EVGLWDAVKDRLSDSPFRLSGGQQQLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEF 205
Query: 203 LKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241
++ L LT+++V+H+L + A + D + + G LVE+
Sbjct: 206 IRSLADRLTVIIVTHNLAQAARISDRA-ALFFDGRLVEE 243
|
Length = 276 |
| >gnl|CDD|172741 PRK14253, PRK14253, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 71.8 bits (176), Expect = 6e-15
Identities = 60/216 (27%), Positives = 110/216 (50%), Gaps = 20/216 (9%)
Query: 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQ-------LLAGLSKPTSGSINIRGYNNDGEP 87
L ++ +P + + G SG GK+TLL+ L+ G+ +G + + G + G
Sbjct: 19 LKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVK--ITGKLTMDGEDIYGNI 76
Query: 88 NNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWV 147
+ + + KVG+VFQ P + ++ + + V +G Q I+ K+ L ++R++
Sbjct: 77 DVADLRI---KVGMVFQKPNPFPMS--IYENVAYGLRAQG--IKDKKVLDEVVERSLRGA 129
Query: 148 GL---DGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLK 204
L L LSGG ++RL +A + PD++++DEP + LD A + +L++
Sbjct: 130 ALWDEVKDRLKSHAFGLSGGQQQRLCIARTIAMEPDVILMDEPTSALDPIATHKIEELME 189
Query: 205 HLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240
LKK TI++V+H +++ + D + MG LVE
Sbjct: 190 ELKKNYTIVIVTHSMQQARRISDRTAFFLMGE-LVE 224
|
Length = 249 |
| >gnl|CDD|182733 PRK10790, PRK10790, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 73.2 bits (180), Expect = 6e-15
Identities = 67/213 (31%), Positives = 105/213 (49%), Gaps = 29/213 (13%)
Query: 18 LEVRDVS--YRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGS 75
+++ +VS YR +L ++ S+P + F + G +GSGK+TL LL G T G
Sbjct: 341 IDIDNVSFAYR---DDNLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGE 397
Query: 76 INIRGYNNDGEPNNS-PEPLPPEKVGIVFQFPERYFVADNVLDEVIFG--------WPRQ 126
I + DG P +S + + V +V Q P +AD L V G W +
Sbjct: 398 IRL-----DGRPLSSLSHSVLRQGVAMVQQDP--VVLADTFLANVTLGRDISEEQVW-QA 449
Query: 127 SGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDE 186
++QL E LA +L + T L + ++LS G K+ LALA LVQ P +LILDE
Sbjct: 450 LETVQLAE-LARSLPDGLY------TPLGEQGNNLSVGQKQLLALARVLVQTPQILILDE 502
Query: 187 PLAGLDWKARADVVKLLKHLKKELTILVVSHDL 219
A +D + + L +++ T++V++H L
Sbjct: 503 ATANIDSGTEQAIQQALAAVREHTTLVVIAHRL 535
|
Length = 592 |
| >gnl|CDD|181888 PRK09473, oppD, oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 72.4 bits (178), Expect = 6e-15
Identities = 69/237 (29%), Positives = 106/237 (44%), Gaps = 30/237 (12%)
Query: 18 LEVRD--VSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKT----TLLQLLAGLSKP 71
L+V+D V++ P V +N ++FSL I G SGSGK+ L+ LLA +
Sbjct: 13 LDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGR- 71
Query: 72 TSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFP----ERYFVADNVLDEVIFGWPRQS 127
GS G P L E++ ++FQ P Y L EV+ S
Sbjct: 72 IGGSATFNGREILNLPEKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGMS 131
Query: 128 GSIQLKEYLALNLQRAINWVGLDGTSLDKD-------PHSLSGGYKRRLALAIQLVQVPD 180
+ +E + + LD + + PH SGG ++R+ +A+ L+ P
Sbjct: 132 KAEAFEESVRM----------LDAVKMPEARKRMKMYPHEFSGGMRQRVMIAMALLCRPK 181
Query: 181 LLILDEPLAGLDWKARADVVKLLKHLKKEL--TILVVSHDLKEMAALVDHSWRMDMG 235
LLI DEP LD +A ++ LL LK+E I++++HDL +A + D M G
Sbjct: 182 LLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAG 238
|
Length = 330 |
| >gnl|CDD|226635 COG4161, ArtP, ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 71.4 bits (175), Expect = 7e-15
Identities = 62/218 (28%), Positives = 110/218 (50%), Gaps = 24/218 (11%)
Query: 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRG--YNNDGEPNNSPE 92
L ++ PE ++ G SG+GK++LL++L L P SG++NI G ++ P++
Sbjct: 18 LFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAI 77
Query: 93 PLPPEKVGIVFQ----FPERYFVADNVLDEV--IFGWPRQSGSIQLKEYLA-LNL-QRAI 144
VG+VFQ +P V +N+++ + G + + ++ L L L A
Sbjct: 78 RDLRRNVGMVFQQYNLWPH-LTVQENLIEAPCRVLGLSKDQALARAEKLLKRLRLKPYA- 135
Query: 145 NWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLK 204
D+ P LSGG ++R+A+A L+ P +L+ DEP A LD + A +V ++K
Sbjct: 136 ----------DRYPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSIIK 185
Query: 205 HLKKE-LTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241
L + +T ++V+H+++ M+ G +VEQ
Sbjct: 186 ELAETGITQVIVTHEVEVARKTASRVVYME-NGHIVEQ 222
|
Length = 242 |
| >gnl|CDD|234199 TIGR03410, urea_trans_UrtE, urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Score = 71.0 bits (175), Expect = 7e-15
Identities = 77/239 (32%), Positives = 111/239 (46%), Gaps = 42/239 (17%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
LEV +++ + IL GVS +P+ + GR+G GKTTLL+ L GL SGSI
Sbjct: 1 LEVSNLNVYYGQSH--ILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIR 58
Query: 78 IRGYNNDGEPNNSPEPLPPEK-----VGIVFQ----FPERYFVADNVLDEVIFGWPRQSG 128
+ DGE LPP + + V Q FP R V +N+L + PR+S
Sbjct: 59 L-----DGEDITK---LPPHERARAGIAYVPQGREIFP-RLTVEENLL-TGLAALPRRSR 108
Query: 129 SI-----QLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLI 183
I +L L L R G D LSGG +++LA+A LV P LL+
Sbjct: 109 KIPDEIYELFPVLKEMLGRR----GGD----------LSGGQQQQLAIARALVTRPKLLL 154
Query: 184 LDEPLAGLDWKARADVVKLLKHLKKE--LTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240
LDEP G+ D+ ++++ L+ E + IL+V L L D + M+ G +
Sbjct: 155 LDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVAS 213
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity [Transport and binding proteins, Amino acids, peptides and amines]. Length = 230 |
| >gnl|CDD|172735 PRK14247, PRK14247, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.7 bits (173), Expect = 1e-14
Identities = 59/203 (29%), Positives = 102/203 (50%), Gaps = 8/203 (3%)
Query: 31 QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRG--YNNDGEPN 88
QV++L+GV+ +P+ + + G SGSGK+TLL++ L + + G Y + +
Sbjct: 15 QVEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIE-LYPEARVSGEVYLDGQDIF 73
Query: 89 NSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQ---SGSIQLKEYLALNLQRAIN 145
+V +VFQ P ++ + V G +L+E + L++A
Sbjct: 74 KMDVIELRRRVQMVFQIPNP-IPNLSIFENVALGLKLNRLVKSKKELQERVRWALEKAQL 132
Query: 146 WVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKH 205
W + LD LSGG ++RL +A L P++L+ DEP A LD + A + L
Sbjct: 133 WDEVK-DRLDAPAGKLSGGQQQRLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLE 191
Query: 206 LKKELTILVVSHDLKEMAALVDH 228
LKK++TI++V+H ++ A + D+
Sbjct: 192 LKKDMTIVLVTHFPQQAARISDY 214
|
Length = 250 |
| >gnl|CDD|237647 PRK14248, PRK14248, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.8 bits (173), Expect = 1e-14
Identities = 62/233 (26%), Positives = 112/233 (48%), Gaps = 14/233 (6%)
Query: 4 RKKRAGGISCDYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQ 63
+ + A LEV+D+S + +N +S + + + + G SG GK+T L+
Sbjct: 8 KIEIAPFPEAKEHILEVKDLSIYYGEKRA--VNDISMDIEKHAVTALIGPSGCGKSTFLR 65
Query: 64 LLAGL-----SKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERY--FVADNVL 116
+ + S + G I G N N L E +G+VFQ P + + +N+
Sbjct: 66 SINRMNDLIPSARSEGEILYEGLNILDSNINVVN-LRRE-IGMVFQKPNPFPKSIYNNIT 123
Query: 117 DEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176
+ + R+ L E + +L +A W + L SLSGG ++RL +A L
Sbjct: 124 HALKYAGERRKSV--LDEIVEESLTKAALWDEVK-DRLHSSALSLSGGQQQRLCIARTLA 180
Query: 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHS 229
P +L+LDEP + LD + A + +L+ LK+E +I++V+H++++ + D +
Sbjct: 181 MKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRT 233
|
Length = 268 |
| >gnl|CDD|237651 PRK14266, PRK14266, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.7 bits (173), Expect = 1e-14
Identities = 58/217 (26%), Positives = 107/217 (49%), Gaps = 26/217 (11%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQ-------LLAGLSK 70
+EV +++ IL V+ +P+ S + G SG GK+T ++ L+ G
Sbjct: 4 IEVENLNTYFDDAH--ILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRH 61
Query: 71 PTSGSINIRG---YNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQS 127
G I + G Y+ + + KVG+VFQ P + ++ D V +G R
Sbjct: 62 --EGHIYLDGVDIYDPAVDVVELRK-----KVGMVFQKPNPF--PKSIFDNVAYGL-RIH 111
Query: 128 GSIQ---LKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLIL 184
G ++E + +L+ A W + LDK LSGG ++RL +A + P+++++
Sbjct: 112 GEDDEDFIEERVEESLKAAALWDEVK-DKLDKSALGLSGGQQQRLCIARTIAVSPEVILM 170
Query: 185 DEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKE 221
DEP + LD + + L+ LK++ TI++V+H++++
Sbjct: 171 DEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQ 207
|
Length = 250 |
| >gnl|CDD|226961 COG4598, HisP, ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 1e-14
Identities = 65/222 (29%), Positives = 113/222 (50%), Gaps = 34/222 (15%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
LEV D+ R + ++L GVS I G SGSGK+T L+ + L KP++GSI
Sbjct: 7 LEVEDLHKR--YGEHEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIR 64
Query: 78 IRGYNNDGEPNNSPEPLPPEK---------VGIVFQFPERYF-------VADNVLDEVI- 120
+ G + + + P +K +G+VFQ +F V +NV++ +
Sbjct: 65 VNGEEIRLKRDKDGQLKPADKRQLQRLRTRLGMVFQ----HFNLWSHMTVLENVIEAPVH 120
Query: 121 -FGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVP 179
G + + ++YLA VG+ + D P LSGG ++R+A+A L P
Sbjct: 121 VLGVSKAEAIERAEKYLAK--------VGIAEKA-DAYPAHLSGGQQQRVAIARALAMEP 171
Query: 180 DLLILDEPLAGLDWKARADVVKLLKHLKKE-LTILVVSHDLK 220
++++ DEP + LD + +V+K+++ L +E T++VV+H++
Sbjct: 172 EVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMG 213
|
Length = 256 |
| >gnl|CDD|213219 cd03252, ABCC_Hemolysin, ATP-binding cassette domain of hemolysin B, subfamily C | Back alignment and domain information |
|---|
Score = 70.2 bits (172), Expect = 2e-14
Identities = 51/215 (23%), Positives = 95/215 (44%), Gaps = 31/215 (14%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
+ V +R IL+ +S + I GRSGSGK+TL +L+ P +G +
Sbjct: 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVL 60
Query: 78 IRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLA 137
+ G++ P L +VG+V Q E ++ D + P
Sbjct: 61 VDGHD---LALADPAWL-RRQVGVVLQ--ENVLFNRSIRDNIALADP------------G 102
Query: 138 LNLQRAINWVGLDG-------------TSLDKDPHSLSGGYKRRLALAIQLVQVPDLLIL 184
++++R I L G T + + LSGG ++R+A+A L+ P +LI
Sbjct: 103 MSMERVIEAAKLAGAHDFISELPEGYDTIVGEQGAGLSGGQRQRIAIARALIHNPRILIF 162
Query: 185 DEPLAGLDWKARADVVKLLKHLKKELTILVVSHDL 219
DE + LD+++ +++ + + T+++++H L
Sbjct: 163 DEATSALDYESEHAIMRNMHDICAGRTVIIIAHRL 197
|
The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E. coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. Length = 237 |
| >gnl|CDD|185016 PRK15056, PRK15056, manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.7 bits (173), Expect = 2e-14
Identities = 62/214 (28%), Positives = 98/214 (45%), Gaps = 22/214 (10%)
Query: 23 VSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYN 82
V++R T L SF++P S + G +GSGK+TL + L G + SG I+I G
Sbjct: 14 VTWRNGHTA---LRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQP 70
Query: 83 NDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVI--FGWPRQSGSIQLKEYLALNL 140
+ P+ + + FP V D V+ GW R++
Sbjct: 71 TRQALQKNLVAYVPQSEEVDWSFP--VLVEDVVMMGRYGHMGWLRRAKK----------R 118
Query: 141 QRAINWVGLDGTSLDKDPH----SLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKAR 196
R I L + + H LSGG K+R+ LA + Q +++LDEP G+D K
Sbjct: 119 DRQIVTAALARVDMVEFRHRQIGELSGGQKKRVFLARAIAQQGQVILLDEPFTGVDVKTE 178
Query: 197 ADVVKLLKHLKKE-LTILVVSHDLKEMAALVDHS 229
A ++ LL+ L+ E T+LV +H+L + D++
Sbjct: 179 ARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYT 212
|
Length = 272 |
| >gnl|CDD|237645 PRK14235, PRK14235, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 70.5 bits (173), Expect = 2e-14
Identities = 68/228 (29%), Positives = 107/228 (46%), Gaps = 42/228 (18%)
Query: 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGL-----SKPTSGSINIRGYNNDGEPNN 89
L V +PEK+ G SG GK+T L+ L + +G I + DGE
Sbjct: 35 LFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITL-----DGEDIY 89
Query: 90 SPEPLPPE---KVGIVFQ----FPERYFVADNVLDEVIFGWPRQSG----SIQLKEYLAL 138
P E +VG+VFQ FP+ + + V +G PR G +L E +
Sbjct: 90 DPRLDVVELRARVGMVFQKPNPFPKSIY------ENVAYG-PRIHGLARSKAELDEIVET 142
Query: 139 NLQRAINW------VGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLD 192
+L++A W + GT L SGG ++RL +A + P+++++DEP + LD
Sbjct: 143 SLRKAGLWEEVKDRLHEPGTGL-------SGGQQQRLCIARAIAVSPEVILMDEPCSALD 195
Query: 193 WKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240
A A V +L+ L++ TI++V+H +++ AA V G LVE
Sbjct: 196 PIATAKVEELIDELRQNYTIVIVTHSMQQ-AARVSQRTAFFHLGNLVE 242
|
Length = 267 |
| >gnl|CDD|183016 PRK11176, PRK11176, lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Score = 71.6 bits (176), Expect = 2e-14
Identities = 64/221 (28%), Positives = 112/221 (50%), Gaps = 24/221 (10%)
Query: 6 KRAGGISCDYSCLEVRDVSYRPPGTQVDILNGVSFSLPE-KSFGLIFGRSGSGKTTLLQL 64
+RA G +E R+V++ PG +V L ++F +P K+ L+ GRSGSGK+T+ L
Sbjct: 336 ERAKG------DIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALV-GRSGSGKSTIANL 388
Query: 65 LAGLSKPTSGSINIRGYN-NDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGW 123
L G I + G++ D + +V +V Q + D + + + +
Sbjct: 389 LTRFYDIDEGEILLDGHDLRDYTLASL-----RNQVALVSQ--NVHLFNDTIANNIAYAR 441
Query: 124 PRQSGSIQLKEYLALNLQRAINWV-----GLDGTSLDKDPHSLSGGYKRRLALAIQLVQV 178
Q Q++E A + A++++ GLD T + ++ LSGG ++R+A+A L++
Sbjct: 442 TEQYSREQIEE--AARMAYAMDFINKMDNGLD-TVIGENGVLLSGGQRQRIAIARALLRD 498
Query: 179 PDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDL 219
+LILDE + LD ++ + L L+K T LV++H L
Sbjct: 499 SPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRL 539
|
Length = 582 |
| >gnl|CDD|183044 PRK11231, fecE, iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 4e-14
Identities = 58/217 (26%), Positives = 96/217 (44%), Gaps = 48/217 (22%)
Query: 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNS--- 90
ILN +S SLP + G +G GK+TLL+ A L P SG++ + +P +
Sbjct: 17 ILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFL-----GDKPISMLSS 71
Query: 91 ----------PE-PLPPEKVGIVFQFPERYFVADNVLDEVIFG-------WPRQSGSIQL 132
P+ L PE GI V + V +G W R S
Sbjct: 72 RQLARRLALLPQHHLTPE--GI------------TVRELVAYGRSPWLSLWGRLSAEDNA 117
Query: 133 KEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLD 192
+ + +A+ ++ D+ LSGG ++R LA+ L Q +++LDEP LD
Sbjct: 118 R------VNQAMEQTRIN-HLADRRLTDLSGGQRQRAFLAMVLAQDTPVVLLDEPTTYLD 170
Query: 193 WKARADVVKLLKHLKKE-LTILVVSHDLKEMAALVDH 228
+ ++++L++ L + T++ V HDL + + DH
Sbjct: 171 INHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDH 207
|
Length = 255 |
| >gnl|CDD|213179 cd00267, ABC_ATPase, ATP-binding cassette transporter nucleotide-binding domain | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 5e-14
Identities = 31/87 (35%), Positives = 45/87 (51%), Gaps = 6/87 (6%)
Query: 19 EVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINI 78
E+ ++S+R G L+ VS +L + G +GSGK+TLL+ +AGL KPTSG I I
Sbjct: 1 EIENLSFRYGGRTA--LDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILI 58
Query: 79 RGYNNDGEPNNSPEPLPPEKVGIVFQF 105
G + P ++G V Q
Sbjct: 59 DGKD----IAKLPLEELRRRIGYVPQL 81
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 157 |
| >gnl|CDD|226364 COG3845, COG3845, ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Score = 70.3 bits (173), Expect = 6e-14
Identities = 64/229 (27%), Positives = 99/229 (43%), Gaps = 34/229 (14%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIF---GRSGSGKTTLLQLLAGLSKPTSG 74
LEV D+S V + VSF + G I G +G+G++ L++ ++GL KP SG
Sbjct: 258 LEVEDLS-VKDRRGVTAVKDVSFEVRA---GEIVGIAGVAGNGQSELVEAISGLRKPASG 313
Query: 75 SINIRGYNNDGEPNNSPEPLP-------PE---KVGIVFQFPERYFVADNVL-----DEV 119
I + G D SP PE G+V +A+N++ +
Sbjct: 314 RILLNG--KDVLGRLSPRERRRLGLAYVPEDRHGHGLVLDLS----LAENLVLGRHDKKP 367
Query: 120 IFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVP 179
G + + + I + S D SLSGG +++L LA +L + P
Sbjct: 368 FSRG----GFLDRRAIRKFA-RELIEEFDVRAPSPDAPARSLSGGNQQKLILARELARRP 422
Query: 180 DLLILDEPLAGLDWKARADVVKLLKHLKKE-LTILVVSHDLKEMAALVD 227
DLLI +P GLD A + + L L+ +L++S DL E+ L D
Sbjct: 423 DLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSD 471
|
Length = 501 |
| >gnl|CDD|182980 PRK11124, artP, arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 6e-14
Identities = 56/196 (28%), Positives = 100/196 (51%), Gaps = 23/196 (11%)
Query: 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNND--GEPNNSP 91
L ++ P+ ++ G SG+GK++LL++L L P SG++NI G + D P++
Sbjct: 17 ALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKA 76
Query: 92 EPLPPEKVGIVFQ----FPERYFVADNVLDEV--IFGWPRQSGSIQLKEYLA-LNL-QRA 143
VG+VFQ +P V N+++ + G + + ++ L L L A
Sbjct: 77 IRELRRNVGMVFQQYNLWPH-LTVQQNLIEAPCRVLGLSKDQALARAEKLLERLRLKPYA 135
Query: 144 INWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLL 203
D+ P LSGG ++R+A+A L+ P +L+ DEP A LD + A +V ++
Sbjct: 136 -----------DRFPLHLSGGQQQRVAIARALMMEPQVLLFDEPTAALDPEITAQIVSII 184
Query: 204 KHLKKE-LTILVVSHD 218
+ L + +T ++V+H+
Sbjct: 185 RELAETGITQVIVTHE 200
|
Length = 242 |
| >gnl|CDD|213198 cd03231, ABC_CcmA_heme_exporter, Cytochrome c biogenesis ATP-binding export protein | Back alignment and domain information |
|---|
Score = 67.9 bits (166), Expect = 7e-14
Identities = 57/197 (28%), Positives = 89/197 (45%), Gaps = 36/197 (18%)
Query: 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93
+ +G+SF+L + G +GSGKTTLL++LAGLS P +G + + G D + ++
Sbjct: 15 LFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQRDSIARG 74
Query: 94 L------PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWV 147
L P K + R++ AD+ ++V + A+ V
Sbjct: 75 LLYLGHAPGIKTTLSVLENLRFWHADHSDEQV---------------------EEALARV 113
Query: 148 GLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLK 207
GL+G D+ LS G +RR+ALA L+ L ILDEP LD +A V + + +
Sbjct: 114 GLNGFE-DRPVAQLSAGQQRRVALARLLLSGRPLWILDEPTTALD---KAGVARFAEAMA 169
Query: 208 KEL-----TILVVSHDL 219
+L DL
Sbjct: 170 GHCARGGMVVLTTHQDL 186
|
CcmA, the ATP-binding component of the bacterial CcmAB transporter. The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperon that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. Length = 201 |
| >gnl|CDD|184585 PRK14239, PRK14239, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 68.6 bits (168), Expect = 7e-14
Identities = 61/219 (27%), Positives = 107/219 (48%), Gaps = 25/219 (11%)
Query: 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK-----PTSGSINIRGYNNDGEPNN 89
LN VS + G SGSGK+TLL+ + ++ +GSI G+N P
Sbjct: 21 LNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYS-PRT 79
Query: 90 SPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGL 149
L E +G+VFQ P + ++ + + V++G R G I+ K+ L ++++ L
Sbjct: 80 DTVDLRKE-IGMVFQQPNPFPMS--IYENVVYGL-RLKG-IKDKQVLDEAVEKS-----L 129
Query: 150 DGTS--------LDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVK 201
G S L LSGG ++R+ +A L P +++LDEP + LD + + +
Sbjct: 130 KGASIWDEVKDRLHDSALGLSGGQQQRVCIARVLATSPKIILLDEPTSALDPISAGKIEE 189
Query: 202 LLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240
L LK + T+L+V+ +++ + + D + + G L+E
Sbjct: 190 TLLGLKDDYTMLLVTRSMQQASRISDRTGFF-LDGDLIE 227
|
Length = 252 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 69.9 bits (171), Expect = 9e-14
Identities = 65/225 (28%), Positives = 99/225 (44%), Gaps = 37/225 (16%)
Query: 18 LEVRDVSYRPP---------GTQVDILNGVSFSL-PEKSFGLIFGRSGSGKTTLLQLLAG 67
L+VR++ R P +V + VSF L P ++ L+ G SGSGK+T + L
Sbjct: 314 LQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLV-GESGSGKSTTGRALLR 372
Query: 68 LSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQS 127
L + G I G D SP L + I F F + Y D PRQ+
Sbjct: 373 LVESQGGEIIFNGQRID---TLSPGKLQALRRDIQFIFQDPYASLD----------PRQT 419
Query: 128 GSIQLKEYLALN-------LQRAINW----VGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176
+ E L ++ + W VGL + PH SGG ++R+ +A L
Sbjct: 420 VGDSIMEPLRVHGLLPGKAAAARVAWLLERVGLLPEHAWRYPHEFSGGQRQRICIARALA 479
Query: 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTI--LVVSHDL 219
P ++I DE ++ LD R ++ LL L+++ I L +SHD+
Sbjct: 480 LNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDM 524
|
Length = 623 |
| >gnl|CDD|185037 PRK15079, PRK15079, oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Score = 69.3 bits (170), Expect = 9e-14
Identities = 66/233 (28%), Positives = 117/233 (50%), Gaps = 36/233 (15%)
Query: 18 LEVRDVS------------YRPPGTQVDILNGVSFSLPE-KSFGLIFGRSGSGKTTLLQL 64
LEV D+ ++PP T + ++GV+ L E ++ G++ G SG GK+T +
Sbjct: 9 LEVADLKVHFDIKDGKQWFWQPPKT-LKAVDGVTLRLYEGETLGVV-GESGCGKSTFARA 66
Query: 65 LAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGI--VFQFP-----ERYFVADNVLD 117
+ GL K T G + G + G + + I +FQ P R + + + +
Sbjct: 67 IIGLVKATDGEVAWLGKDLLGM---KDDEWRAVRSDIQMIFQDPLASLNPRMTIGEIIAE 123
Query: 118 EVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ 177
+ P+ S ++K+ + + + VGL +++ PH SGG +R+ +A L+
Sbjct: 124 PLRTYHPKLSRQ-EVKDRVKAMMLK----VGLLPNLINRYPHEFSGGQCQRIGIARALIL 178
Query: 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKKE--LTILVVSHDLKEMAALVDH 228
P L+I DEP++ LD +A VV LL+ L++E L+++ ++HDL A+V H
Sbjct: 179 EPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDL----AVVKH 227
|
Length = 331 |
| >gnl|CDD|226968 COG4615, PvdE, ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 69.8 bits (171), Expect = 1e-13
Identities = 63/215 (29%), Positives = 96/215 (44%), Gaps = 35/215 (16%)
Query: 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTS 73
D+ LE+R+V + + ++ ++ + G +GSGK+TL LL GL +P S
Sbjct: 319 DWKTLELRNVRFAYQDNAFH-VGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQS 377
Query: 74 GSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERY------FVADNVLDEVIFGWPRQS 127
G I + G +P+ E+ E Y +D L + + G P
Sbjct: 378 GEILLDG-----------KPVSAEQ-------LEDYRKLFSAVFSDYHLFDQLLG-PEGK 418
Query: 128 GSIQLKE-YLA-LNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILD 185
S QL E +L L L + L+ LS G K+RLAL + L++ D+L+LD
Sbjct: 419 ASPQLIEKWLQRLELA---HKTSLNDGRF--SNLKLSTGQKKRLALLLALLEERDILVLD 473
Query: 186 EPLAGLDWKARADVVKLLKHLKKEL--TILVVSHD 218
E A D R + ++L L KE TI +SHD
Sbjct: 474 EWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHD 508
|
Length = 546 |
| >gnl|CDD|184593 PRK14258, PRK14258, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.8 bits (165), Expect = 1e-13
Identities = 61/204 (29%), Positives = 100/204 (49%), Gaps = 16/204 (7%)
Query: 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRG----YNNDGEPNN 89
IL GVS + + I G SG GK+T L+ L +++ + + G +N +
Sbjct: 22 ILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNE-LESEVRVEGRVEFFNQNIYERR 80
Query: 90 SPEPLPPEKVGIVFQFPERY--FVADNVLDEV-IFGW-PRQSGSIQLKEYLALNLQRAIN 145
+V +V P + V DNV V I GW P+ +++ + + L+ A
Sbjct: 81 VNLNRLRRQVSMVHPKPNLFPMSVYDNVAYGVKIVGWRPK----LEIDDIVESALKDADL 136
Query: 146 WVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKH 205
W + + K LSGG ++RL +A L P +L++DEP GLD A V L++
Sbjct: 137 WDEIK-HKIHKSALDLSGGQQQRLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQS 195
Query: 206 --LKKELTILVVSHDLKEMAALVD 227
L+ ELT+++VSH+L +++ L D
Sbjct: 196 LRLRSELTMVIVSHNLHQVSRLSD 219
|
Length = 261 |
| >gnl|CDD|182692 PRK10744, pstB, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 2e-13
Identities = 61/227 (26%), Positives = 105/227 (46%), Gaps = 41/227 (18%)
Query: 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLL-------QLLAGLSKPTSGSINIRGYN--NDG 85
L ++ + + G SG GK+TLL +L G I + G N
Sbjct: 29 LKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQR--AEGEILLDGENILTPK 86
Query: 86 EPNNSPEPLPPEKVGIVFQ----FPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALN-- 139
+ L KVG+VFQ FP + D + FG ++L E L+
Sbjct: 87 QDIA----LLRAKVGMVFQKPTPFPMSIY------DNIAFG-------VRLFEKLSRAEM 129
Query: 140 ---LQRAINWVGLDGTSLDK---DPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDW 193
++ A+ L DK +SLSGG ++RL +A + P++L+LDEP + LD
Sbjct: 130 DERVEWALTKAALWNEVKDKLHQSGYSLSGGQQQRLCIARGIAIRPEVLLLDEPCSALDP 189
Query: 194 KARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240
+ + +L+ LK++ T+++V+H++++ A D++ M +G L+E
Sbjct: 190 ISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGE-LIE 235
|
Length = 260 |
| >gnl|CDD|182561 PRK10575, PRK10575, iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 67.5 bits (165), Expect = 2e-13
Identities = 71/228 (31%), Positives = 110/228 (48%), Gaps = 43/228 (18%)
Query: 20 VRDVSYRPPGTQVDILNGVSFSLPE-KSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINI 78
+R+VS+R PG +L+ +S + P K GLI G +GSGK+TLL++L P+ G I +
Sbjct: 14 LRNVSFRVPGRT--LLHPLSLTFPAGKVTGLI-GHNGSGKSTLLKMLGRHQPPSEGEILL 70
Query: 79 RGYNNDGEPNNS-------------PEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPR 125
D +P S P+ LP + V R VA I +P
Sbjct: 71 -----DAQPLESWSSKAFARKVAYLPQQLPAAEGMTV-----RELVA-------IGRYPW 113
Query: 126 QSGSIQLKEYLALNLQR---AINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLL 182
L + A + ++ AI+ VGL + + SLSGG ++R +A+ + Q L
Sbjct: 114 HGA---LGRFGAADREKVEEAISLVGLKPLA-HRLVDSLSGGERQRAWIAMLVAQDSRCL 169
Query: 183 ILDEPLAGLDWKARADVVKLLKHLKKE--LTILVVSHDLKEMAALVDH 228
+LDEP + LD + DV+ L+ L +E LT++ V HD+ A D+
Sbjct: 170 LLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDY 217
|
Length = 265 |
| >gnl|CDD|233207 TIGR00955, 3a01204, The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Score = 68.5 bits (168), Expect = 2e-13
Identities = 60/198 (30%), Positives = 89/198 (44%), Gaps = 27/198 (13%)
Query: 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP---TSGSINIRGYNNDGEPNNS 90
+L VS + G SG+GKTTL+ LA S SGS+ + +G P ++
Sbjct: 40 LLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLL-----NGMPIDA 94
Query: 91 PEPLPPEKVGIVFQFPERYFVADNVLDEVIFG----WPRQSGSIQLKE-----YLALNLQ 141
E V Q + + V + ++F PR+ + +E AL L+
Sbjct: 95 KEM--RAISAYVQQD-DLFIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLR 151
Query: 142 RAINWV-GLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVV 200
+ N G+ G LSGG ++RLA A +L+ P LL DEP +GLD VV
Sbjct: 152 KCANTRIGVPG-----RVKGLSGGERKRLAFASELLTDPPLLFCDEPTSGLDSFMAYSVV 206
Query: 201 KLLKHL-KKELTILVVSH 217
++LK L +K TI+ H
Sbjct: 207 QVLKGLAQKGKTIICTIH 224
|
[Transport and binding proteins, Other]. Length = 617 |
| >gnl|CDD|172757 PRK14269, PRK14269, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.6 bits (162), Expect = 3e-13
Identities = 52/204 (25%), Positives = 100/204 (49%), Gaps = 13/204 (6%)
Query: 38 VSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTS---GSINIRGYNNDGEPNNSPEPL 94
++ + + + G SG GK+T L+ ++ + G + I G + N
Sbjct: 21 INMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEG----KDVKNQDVVA 76
Query: 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSL 154
+ VG+VFQ P + ++ + + + P+ G I+ K+ + + VGL
Sbjct: 77 LRKNVGMVFQQPNVF--VKSIYENISYA-PKLHGMIKNKDEEEALVVDCLQKVGLFEEVK 133
Query: 155 DK---DPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELT 211
DK + +LSGG ++RL +A L P LL+LDEP + LD + + +LLK L L+
Sbjct: 134 DKLKQNALALSGGQQQRLCIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLS 193
Query: 212 ILVVSHDLKEMAALVDHSWRMDMG 235
+++V+H++++ + D++ +G
Sbjct: 194 MIMVTHNMQQGKRVADYTAFFHLG 217
|
Length = 246 |
| >gnl|CDD|213215 cd03248, ABCC_TAP, ATP-binding cassette domain of the Transporter Associated with Antigen Processing, subfamily C | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 4e-13
Identities = 63/210 (30%), Positives = 106/210 (50%), Gaps = 18/210 (8%)
Query: 18 LEVRDVSY---RPPGTQVDILNGVSFSL-PEKSFGLIFGRSGSGKTTLLQLLAGLSKPTS 73
++ ++V++ P T V L VSF+L P + L+ G SGSGK+T++ LL +P
Sbjct: 12 VKFQNVTFAYPTRPDTLV--LQDVSFTLHPGEVTALV-GPSGSGKSTVVALLENFYQPQG 68
Query: 74 GSINIRGYNNDGEPNNSPE-PLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQL 132
G + + DG+P + E KV +V Q P + A ++ D + +G S
Sbjct: 69 GQVLL-----DGKPISQYEHKYLHSKVSLVGQEPVLF--ARSLQDNIAYGLQSCSFECVK 121
Query: 133 KEYLALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAG 190
+ + I+ + G D T + + LSGG K+R+A+A L++ P +LILDE +
Sbjct: 122 EAAQKAHAHSFISELASGYD-TEVGEKGSQLSGGQKQRVAIARALIRNPQVLILDEATSA 180
Query: 191 LDWKARADVVKLLKHLKKELTILVVSHDLK 220
LD ++ V + L + T+LV++H L
Sbjct: 181 LDAESEQQVQQALYDWPERRTVLVIAHRLS 210
|
TAP (Transporter Associated with Antigen Processing) is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules. Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. Length = 226 |
| >gnl|CDD|227118 COG4778, PhnL, ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Score = 66.3 bits (162), Expect = 4e-13
Identities = 70/245 (28%), Positives = 109/245 (44%), Gaps = 38/245 (15%)
Query: 18 LEVRDVS-----YRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPT 72
L V +VS ++ G ++ +L VS S+ ++ G SGSGK+TLL+ L P
Sbjct: 5 LNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPD 64
Query: 73 SGSINIRGYNNDGEPNNSPEPLPPE-------KVGIVFQF-------PERYFVADNVLDE 118
G I +R ++GE + P E +G V QF VA+ +L
Sbjct: 65 EGQILVR---HEGEWVDLVTAEPREVLEVRRTTIGYVSQFLRVIPRVSALDVVAEPLLAR 121
Query: 119 VIFGWPRQSGSIQLKEYLA-LNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ 177
G PR+ + + L LNL + W P + SGG ++R+ +A +
Sbjct: 122 ---GVPREVARAKAADLLTRLNLPERL-W--------SLAPATFSGGEQQRVNIARGFIV 169
Query: 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILV-VSHDLKEMAALVDHSWRMDMGG 236
+L+LDEP A LD RA VV+L++ K LV + HD + A+ D +D+
Sbjct: 170 DYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRL--LDVSA 227
Query: 237 FLVEQ 241
F +
Sbjct: 228 FSPRK 232
|
Length = 235 |
| >gnl|CDD|213190 cd03223, ABCD_peroxisomal_ALDP, ATP-binding cassette domain of peroxisomal transporter, subfamily D | Back alignment and domain information |
|---|
Score = 64.5 bits (158), Expect = 5e-13
Identities = 50/202 (24%), Positives = 83/202 (41%), Gaps = 58/202 (28%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
+E+ ++S P +V +L +SF + LI G SG+GK++L + LAGL SG I
Sbjct: 1 IELENLSLATPDGRV-LLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIG 59
Query: 78 IRGYNNDGEPNNSPEPLPPEKVGIVFQFPER-YFVADNVLDEVIFGWPRQSGSIQLKEYL 136
+ PE ++F P+R Y + +++I+ W
Sbjct: 60 M-----------------PEGEDLLF-LPQRPYLPLGTLREQLIYPWDDV---------- 91
Query: 137 ALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKAR 196
LSGG ++RLA A L+ P + LDE + LD ++
Sbjct: 92 ------------------------LSGGEQQRLAFARLLLHKPKFVFLDEATSALDEESE 127
Query: 197 ADVVKLLKHLKKELTILV-VSH 217
+L + LK+ ++ V H
Sbjct: 128 D---RLYQLLKELGITVISVGH 146
|
Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome. The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asymptomatic). Length = 166 |
| >gnl|CDD|172751 PRK14263, PRK14263, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 66.2 bits (161), Expect = 5e-13
Identities = 53/185 (28%), Positives = 93/185 (50%), Gaps = 18/185 (9%)
Query: 52 GRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPN--------NSPEPLPPEK-VGIV 102
G SG GK+T+L+ L ++ ++G+ +G + +P+ + +G+V
Sbjct: 41 GPSGCGKSTVLRSLNRMNDL------VKGFRFEGHVHFLGQDVYGKGVDPVVVRRYIGMV 94
Query: 103 FQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLS 162
FQ P + ++ + D V FG L + + LQ A W + L SLS
Sbjct: 95 FQQPNPFSMS--IFDNVAFGLRLNRYKGDLGDRVKHALQGAALWDEVK-DKLKVSGLSLS 151
Query: 163 GGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEM 222
GG ++RL +A + P++L+LDEP + LD A V +L+ LKK+ TI +V+H++++
Sbjct: 152 GGQQQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQA 211
Query: 223 AALVD 227
+ D
Sbjct: 212 IRVAD 216
|
Length = 261 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 67.3 bits (165), Expect = 6e-13
Identities = 56/176 (31%), Positives = 79/176 (44%), Gaps = 37/176 (21%)
Query: 50 IFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNS--PEPLPPEKVGIVFQFPE 107
I G +G GKTT ++LLAG+ KP GS + + S P+ + P+ G V
Sbjct: 372 ILGPNGIGKTTFVKLLAGVIKPDEGS--------EEDLKVSYKPQYISPDYDGTVEDL-- 421
Query: 108 RYFVADNVLDEVIFGWPRQSGSIQLKEYLA--LNLQRAINWVGLDGTSLDKDPHSLSGGY 165
L I GS K + LNL+ L++ LSGG
Sbjct: 422 --------LRSAI---RSAFGSSYFKTEIVKPLNLEDL----------LERPVDELSGGE 460
Query: 166 KRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHL--KKELTILVVSHDL 219
+R+A+A L + DL +LDEP A LD + R V K+++ E T LVV HD+
Sbjct: 461 LQRVAIAAALSREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDI 516
|
Length = 591 |
| >gnl|CDD|233209 TIGR00958, 3a01208, Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Score = 67.4 bits (165), Expect = 7e-13
Identities = 63/222 (28%), Positives = 103/222 (46%), Gaps = 46/222 (20%)
Query: 18 LEVRDVSYR-PPGTQVDILNGVSFSL-PEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGS 75
+E +DVS+ P V +L G++F+L P + L+ G SGSGK+T+ LL L +PT G
Sbjct: 479 IEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALV-GPSGSGKSTVAALLQNLYQPTGGQ 537
Query: 76 INIRGYNNDGEPNNSPEPLPP-------EKVGIVFQFPERY--FVADNVL-------DEV 119
+ + G PL +V +V Q P + V +N+ DE
Sbjct: 538 VLLDG-----------VPLVQYDHHYLHRQVALVGQEPVLFSGSVRENIAYGLTDTPDEE 586
Query: 120 IFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVP 179
I + + + + + T + + LSGG K+R+A+A LV+ P
Sbjct: 587 IMAAAKAANA----HDFIMEFPNGYD------TEVGEKGSQLSGGQKQRIAIARALVRKP 636
Query: 180 DLLILDEPLAGLDWKARADVVKLLKHLK--KELTILVVSHDL 219
+LILDE + LD A+ +LL+ + T+L+++H L
Sbjct: 637 RVLILDEATSALD----AECEQLLQESRSRASRTVLLIAHRL 674
|
[Transport and binding proteins, Other]. Length = 711 |
| >gnl|CDD|237917 PRK15134, PRK15134, microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Score = 67.0 bits (164), Expect = 8e-13
Identities = 71/247 (28%), Positives = 115/247 (46%), Gaps = 35/247 (14%)
Query: 18 LEVRDVS--YRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKT-TLLQLLAGLSKP--- 71
L + ++S +R T ++N VS + + G SGSGK+ T L +L L P
Sbjct: 6 LAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVV 65
Query: 72 -TSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSI 130
SG I G + + + K+ ++FQ P V+ N P +
Sbjct: 66 YPSGDIRFHGESLLHASEQTLRGVRGNKIAMIFQEP---MVSLN---------PLHTLEK 113
Query: 131 QLKEYLALN-----------LQRAINWVGLDGTS--LDKDPHSLSGGYKRRLALAIQLVQ 177
QL E L+L+ + ++ VG+ + L PH LSGG ++R+ +A+ L+
Sbjct: 114 QLYEVLSLHRGMRREAARGEILNCLDRVGIRQAAKRLTDYPHQLSGGERQRVMIAMALLT 173
Query: 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKKEL--TILVVSHDLKEMAALVDHSWRMDMG 235
P+LLI DEP LD +A +++LL+ L++EL +L ++H+L + L D M
Sbjct: 174 RPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQ-N 232
Query: 236 GFLVEQR 242
G VEQ
Sbjct: 233 GRCVEQN 239
|
Length = 529 |
| >gnl|CDD|236554 PRK09536, btuD, corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 8e-13
Identities = 63/216 (29%), Positives = 103/216 (47%), Gaps = 25/216 (11%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
++V D+S T V L+GV S+ E S + G +G+GKTTLL+ + G PT+G++
Sbjct: 4 IDVSDLSVEFGDTTV--LDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVL 61
Query: 78 IRGYNNDGEP--NNSPEPLP------PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGS 129
+ G+ S P+ + F+F R V + P +S
Sbjct: 62 V-----AGDDVEALSARAASRRVASVPQDTSLSFEFDVRQVVE-------MGRTPHRSRF 109
Query: 130 IQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLA 189
E ++RA+ G+ + D+ SLSGG ++R+ LA L Q +L+LDEP A
Sbjct: 110 DTWTETDRAAVERAMERTGVAQFA-DRPVTSLSGGERQRVLLARALAQATPVLLLDEPTA 168
Query: 190 GLDWKARADVVKLLKHLKKE-LTILVVSHDLKEMAA 224
LD + ++L++ L + T + HDL ++AA
Sbjct: 169 SLDINHQVRTLELVRRLVDDGKTAVAAIHDL-DLAA 203
|
Length = 402 |
| >gnl|CDD|236947 PRK11650, ugpC, glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 8e-13
Identities = 77/241 (31%), Positives = 118/241 (48%), Gaps = 42/241 (17%)
Query: 16 SCLEVRDV--SYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTS 73
+ L+++ V SY TQV + G+ + + F ++ G SG GK+TLL+++AGL + TS
Sbjct: 2 AGLKLQAVRKSY-DGKTQV--IKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITS 58
Query: 74 GSINIRGYN-NDGEPNNSPEPLPPEKVGI--VFQ----FPERYFVADNV---LDEVIFGW 123
G I I G N+ EP + I VFQ +P V +N+ L I G
Sbjct: 59 GEIWIGGRVVNELEPADR---------DIAMVFQNYALYPHMS-VRENMAYGLK--IRGM 106
Query: 124 PRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLI 183
P K + + A + L+ LD+ P LSGG ++R+A+ +V+ P + +
Sbjct: 107 P--------KAEIEERVAEAARILELEPL-LDRKPRELSGGQRQRVAMGRAIVREPAVFL 157
Query: 184 LDEPLAGLDWKARADVVKLLKHLKKEL--TILVVSHDLKEMAALVDHSWR-MDMGGFLVE 240
DEPL+ LD K R + ++ L + L T L V+HD E L D R + M G + E
Sbjct: 158 FDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLAD---RVVVMNGGVAE 214
Query: 241 Q 241
Q
Sbjct: 215 Q 215
|
Length = 356 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 63.6 bits (156), Expect = 8e-13
Identities = 27/70 (38%), Positives = 40/70 (57%), Gaps = 2/70 (2%)
Query: 161 LSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLK 220
LSGG K RLALA L++ P+LL+LDEP LD ++ + + LK T+++VSHD
Sbjct: 71 LSGGEKMRLALAKLLLENPNLLLLDEPTNHLDLESIEALEEALKEYPG--TVILVSHDRY 128
Query: 221 EMAALVDHSW 230
+ +
Sbjct: 129 FLDQVATKII 138
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 66.4 bits (163), Expect = 1e-12
Identities = 58/176 (32%), Positives = 81/176 (46%), Gaps = 37/176 (21%)
Query: 50 IFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNS--PEPLPPEKVGIVFQFPE 107
I G +G GKTT +LLAG+ KP G + D E S P+ + P+ G V
Sbjct: 370 IVGPNGIGKTTFAKLLAGVLKPDEGEV-------DPELKISYKPQYIKPDYDGTVEDL-- 420
Query: 108 RYFVADNVLDEVIFGWPRQSGSIQLKEYLA--LNLQRAINWVGLDGTSLDKDPHSLSGGY 165
L + GS K + L L+R LDK+ LSGG
Sbjct: 421 --------LRSI----TDDLGSSYYKSEIIKPLQLERL----------LDKNVKDLSGGE 458
Query: 166 KRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHL--KKELTILVVSHDL 219
+R+A+A L + DL +LDEP A LD + R V K ++ + ++E T LVV HD+
Sbjct: 459 LQRVAIAACLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDI 514
|
Length = 590 |
| >gnl|CDD|213220 cd03253, ABCC_ATM1_transporter, ATP-binding cassette domain of iron-sulfur clusters transporter, subfamily C | Back alignment and domain information |
|---|
Score = 64.6 bits (158), Expect = 2e-12
Identities = 59/214 (27%), Positives = 98/214 (45%), Gaps = 26/214 (12%)
Query: 18 LEVRDV--SYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGS 75
+E +V +Y P +L VSF++P I G SGSGK+T+L+LL +SGS
Sbjct: 1 IEFENVTFAYDP---GRPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGS 57
Query: 76 INIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEY 135
I I G + +S +G+V Q + D + + +G P + ++
Sbjct: 58 ILIDGQDIREVTLDSLR----RAIGVVPQ--DTVLFNDTIGYNIRYGRPDATDEEVIEAA 111
Query: 136 LALNLQRAI-NW-------VGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEP 187
A + I + VG G LSGG K+R+A+A +++ P +L+LDE
Sbjct: 112 KAAQIHDKIMRFPDGYDTIVGERGL-------KLSGGEKQRVAIARAILKNPPILLLDEA 164
Query: 188 LAGLDWKARADVVKLLKHLKKELTILVVSHDLKE 221
+ LD ++ L+ + K T +V++H L
Sbjct: 165 TSALDTHTEREIQAALRDVSKGRTTIVIAHRLST 198
|
ATM1 is an ABC transporter that is expressed in the mitochondria. Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 236 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 66.2 bits (161), Expect = 2e-12
Identities = 57/202 (28%), Positives = 100/202 (49%), Gaps = 24/202 (11%)
Query: 43 PEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRG---YNNDGEPNNSPEPLPPEKV 99
P + FGL+ G +G+GKTT ++L G + TSG + G N + + + +
Sbjct: 1964 PGECFGLL-GVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNISDVHQN--------M 2014
Query: 100 GIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINW-VGLDGTSL--DK 156
G QF + +D+++ G +L+ A +++ NW + G SL D+
Sbjct: 2015 GYCPQF--------DAIDDLLTGREHLYLYARLRGVPAEEIEKVANWSIQSLGLSLYADR 2066
Query: 157 DPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVK-LLKHLKKELTILVV 215
+ SGG KR+L+ AI L+ P L++LDEP G+D +AR + ++ +++ +++
Sbjct: 2067 LAGTYSGGNKRKLSTAIALIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLT 2126
Query: 216 SHDLKEMAALVDHSWRMDMGGF 237
SH ++E AL M G F
Sbjct: 2127 SHSMEECEALCTRLAIMVKGAF 2148
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|213204 cd03237, ABC_RNaseL_inhibitor_domain2, The ATP-binding cassette domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 64.4 bits (157), Expect = 2e-12
Identities = 49/181 (27%), Positives = 77/181 (42%), Gaps = 27/181 (14%)
Query: 50 IFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERY 109
I G +G GKTT +++LAG+ KP G D E P+ + ++ R
Sbjct: 30 ILGPNGIGKTTFIKMLAGVLKPDEG---------DIEIELDTVSYKPQYIKADYEGTVRD 80
Query: 110 FVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRL 169
++ K +A LQ ++ LD++ LSGG +R+
Sbjct: 81 LLSSIT--------KDFYTHPYFKTEIAKPLQ-------IEQI-LDREVPELSGGELQRV 124
Query: 170 ALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKH--LKKELTILVVSHDLKEMAALVD 227
A+A L + D+ +LDEP A LD + R K+++ E T VV HD+ + L D
Sbjct: 125 AIAACLSKDADIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLAD 184
Query: 228 H 228
Sbjct: 185 R 185
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 246 |
| >gnl|CDD|131259 TIGR02204, MsbA_rel, ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.9 bits (161), Expect = 2e-12
Identities = 65/235 (27%), Positives = 115/235 (48%), Gaps = 28/235 (11%)
Query: 18 LEVRDVSYRPPG-TQVDILNGVSFSL-PEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGS 75
+E V++ P L+G++ ++ P ++ L+ G SG+GK+TL QLL P SG
Sbjct: 338 IEFEQVNFAYPARPDQPALDGLNLTVRPGETVALV-GPSGAGKSTLFQLLLRFYDPQSGR 396
Query: 76 INIRGYN-NDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKE 134
I + G + +P ++ +V Q P + A +V++ + +G P + +
Sbjct: 397 ILLDGVDLRQLDPAELRA-----RMALVPQDPVLF--AASVMENIRYGRPDATDE---EV 446
Query: 135 YLALNLQRAINWV-----GLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLA 189
A A ++ G D T L + +LSGG ++R+A+A +++ +L+LDE +
Sbjct: 447 EAAARAAHAHEFISALPEGYD-TYLGERGVTLSGGQRQRIAIARAILKDAPILLLDEATS 505
Query: 190 GLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWR---MDMGGFLVEQ 241
LD ++ V + L+ L K T L+++H L A V + R MD G +V Q
Sbjct: 506 ALDAESEQLVQQALETLMKGRTTLIIAHRL----ATVLKADRIVVMDQGR-IVAQ 555
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. Length = 576 |
| >gnl|CDD|234357 TIGR03797, NHLM_micro_ABC2, NHLM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 65.8 bits (161), Expect = 2e-12
Identities = 72/235 (30%), Positives = 109/235 (46%), Gaps = 43/235 (18%)
Query: 1 VNLRKKRAGGISCDYSCLEVRDVS--YRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGK 58
V+ K G +S +EV V+ YRP G IL+ VS + F I G SGSGK
Sbjct: 438 VDEAKTDPGKLSGA---IEVDRVTFRYRPDGPL--ILDDVSLQIEPGEFVAIVGPSGSGK 492
Query: 59 TTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKV----GIVFQFPERYFVADN 114
+TLL+LL G P SGS+ G + G L + V G+V Q ++ +
Sbjct: 493 STLLRLLLGFETPESGSVFYDGQDLAG--------LDVQAVRRQLGVVLQ--NGRLMSGS 542
Query: 115 VLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG----------TSLDKDPHSLSGG 164
+ + + G P + L E A GL T + + +LSGG
Sbjct: 543 IFENIAGGAP-----LTLDE-----AWEAARMAGLAEDIRAMPMGMHTVISEGGGTLSGG 592
Query: 165 YKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDL 219
++RL +A LV+ P +L+ DE + LD + +A V + L+ LK +T +V++H L
Sbjct: 593 QRQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERLK--VTRIVIAHRL 645
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal leader sequence cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, members of protein families related to nitrile hydratase alpha subunit or to nif11 have undergone paralogous family expansions, with members possessing a putative bacteriocin cleavage region ending with a classic Gly-Gly motif. Those sets of putative bacteriocins, members of this protein family and its partners TIGR03794 and TIGR03796, and cyclodehydratase/docking scaffold fusion proteins of thiazole/oxazole biosynthesis frequently show correlated species distribution and co-clustering within many of those genomes [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 686 |
| >gnl|CDD|181939 PRK09544, znuC, high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Score = 64.0 bits (156), Expect = 3e-12
Identities = 56/197 (28%), Positives = 93/197 (47%), Gaps = 29/197 (14%)
Query: 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93
+L+ VS L + G +G+GK+TL++++ GL P G I +
Sbjct: 19 VLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVI---------------KR 63
Query: 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYL-ALNLQRAINWVGLDGT 152
++G V P++ ++ D L + + R + ++ L AL +A G
Sbjct: 64 NGKLRIGYV---PQKLYL-DTTLPLTVNRFLRLRPGTKKEDILPALKRVQA-------GH 112
Query: 153 SLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKEL-- 210
+D LSGG +R+ LA L+ P LL+LDEP G+D + + L+ L++EL
Sbjct: 113 LIDAPMQKLSGGETQRVLLARALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDC 172
Query: 211 TILVVSHDLKEMAALVD 227
+L+VSHDL + A D
Sbjct: 173 AVLMVSHDLHLVMAKTD 189
|
Length = 251 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 64.8 bits (158), Expect = 4e-12
Identities = 60/188 (31%), Positives = 92/188 (48%), Gaps = 31/188 (16%)
Query: 34 ILNGVSFSL-PEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINI-RGYNNDGEPNNSP 91
IL+ + +L P GL+ GR+G+GK+TL++LLAG P SG I + +G
Sbjct: 327 ILDSIKLNLVPGSRIGLL-GRNGAGKSTLIKLLAGELAPVSGEIGLAKGI---------- 375
Query: 92 EPLPPEKVGIVFQFPERYFVAD-NVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLD 150
K+G Q + AD + L + P++ +L++YL G
Sbjct: 376 ------KLGYFAQHQLEFLRADESPLQHLARLAPQELEQ-KLRDYLG--------GFGFQ 420
Query: 151 GTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKEL 210
G + ++ SGG K RL LA+ + Q P+LL+LDEP LD R + + L + E
Sbjct: 421 GDKVTEETRRFSGGEKARLVLALIVWQRPNLLLLDEPTNHLDLDMRQALTEAL--IDFEG 478
Query: 211 TILVVSHD 218
++VVSHD
Sbjct: 479 ALVVVSHD 486
|
Length = 638 |
| >gnl|CDD|132313 TIGR03269, met_CoM_red_A2, methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Score = 64.1 bits (156), Expect = 7e-12
Identities = 68/251 (27%), Positives = 112/251 (44%), Gaps = 39/251 (15%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLS--KPTSGS 75
+EV++++ + G +V L +SF++ E I GRSG+GK+ L+ +L G+ +PTSG
Sbjct: 1 IEVKNLTKKFDGKEV--LKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGR 58
Query: 76 INIR-------GY----NNDGEP-NNSPEPLPPEKV-----------------GIVFQFP 106
I GY + GEP L PE+V I+ Q
Sbjct: 59 IIYHVALCEKCGYVERPSKVGEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRT 118
Query: 107 ERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYK 166
+ D VLD V+ + A++L + + T + +D LSGG K
Sbjct: 119 FALYGDDTVLDNVLEALEEIGYEGKEAVGRAVDLIEMVQ-LSHRITHIARD---LSGGEK 174
Query: 167 RRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKE--LTILVVSHDLKEMAA 224
+R+ LA QL + P L + DEP LD + V L+ K +++++ SH + +
Sbjct: 175 QRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIED 234
Query: 225 LVDHSWRMDMG 235
L D + ++ G
Sbjct: 235 LSDKAIWLENG 245
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2 [Energy metabolism, Methanogenesis]. Length = 520 |
| >gnl|CDD|236755 PRK10762, PRK10762, D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Score = 63.9 bits (156), Expect = 8e-12
Identities = 67/231 (29%), Positives = 112/231 (48%), Gaps = 44/231 (19%)
Query: 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSG---SGKTTLLQLLAGLSKPTS 73
L+V ++S PG +N VSF+L + G I G SG +G+T L+++L G TS
Sbjct: 257 RLKVDNLS--GPG-----VNDVSFTLRK---GEILGVSGLMGAGRTELMKVLYGALPRTS 306
Query: 74 GSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFG----------- 122
G + + DG + P GIV Y D D ++ G
Sbjct: 307 GYVTL-----DGHEVVTRSPQDGLANGIV------YISEDRKRDGLVLGMSVKENMSLTA 355
Query: 123 ---WPRQSGSIQLK-EYLAL-NLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ 177
+ R GS++ E A+ + R N + S+++ LSGG ++++A+A L+
Sbjct: 356 LRYFSRAGGSLKHADEQQAVSDFIRLFN---IKTPSMEQAIGLLSGGNQQKVAIARGLMT 412
Query: 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKKE-LTILVVSHDLKEMAALVD 227
P +LILDEP G+D A+ ++ +L+ K E L+I++VS ++ E+ + D
Sbjct: 413 RPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSD 463
|
Length = 501 |
| >gnl|CDD|163483 TIGR03771, anch_rpt_ABC, anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Score = 62.2 bits (151), Expect = 9e-12
Identities = 57/190 (30%), Positives = 89/190 (46%), Gaps = 31/190 (16%)
Query: 50 IFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERY 109
+ G +G+GKTTLL+ + GL P G++ + G + +G V P+R+
Sbjct: 11 LLGPNGAGKTTLLRAILGLIPPAKGTVKVAG---------ASPGKGWRHIGYV---PQRH 58
Query: 110 -FVAD---NVLDEVI------FGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDP- 158
F D +V V+ GW R+ + ++ A+ A+ VGL T L P
Sbjct: 59 EFAWDFPISVAHTVMSGRTGHIGWLRRPC---VADFAAVR--DALRRVGL--TELADRPV 111
Query: 159 HSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKE-LTILVVSH 217
LSGG ++R+ +A L P +L+LDEP GLD + + +L L IL+ +H
Sbjct: 112 GELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQELLTELFIELAGAGTAILMTTH 171
Query: 218 DLKEMAALVD 227
DL + A D
Sbjct: 172 DLAQAMATCD 181
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown [Transport and binding proteins, Unknown substrate]. Length = 223 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 63.7 bits (155), Expect = 1e-11
Identities = 61/223 (27%), Positives = 102/223 (45%), Gaps = 22/223 (9%)
Query: 18 LEVRDVS-YRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPT--SG 74
LE R+++ + ++ VSFSL + G G+G+T L+Q L G + P G
Sbjct: 258 LEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFG-AYPGKFEG 316
Query: 75 SINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPER--------YFVADNVLDEVIFGWPRQ 126
++ I +G+P + P + GI +R V N+ V+
Sbjct: 317 NVFI-----NGKPVDIRNPAQAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVL---KSF 368
Query: 127 SGSIQLKEYLALN-LQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILD 185
+++ L + AI + + S LSGG +++ LA L+ P +LILD
Sbjct: 369 CFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQKAVLAKMLLTNPRVLILD 428
Query: 186 EPLAGLDWKARADVVKLLKHLKKE-LTILVVSHDLKEMAALVD 227
EP G+D A+ ++ KL+ L +E + I+VVS +L E+ L D
Sbjct: 429 EPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSD 471
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|130260 TIGR01192, chvA, glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Score = 63.4 bits (154), Expect = 1e-11
Identities = 58/240 (24%), Positives = 99/240 (41%), Gaps = 41/240 (17%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
+E R +++ + + + VSF I G +G+GKTTL+ LL + PT G I
Sbjct: 335 VEFRHITFEFANSSQGVFD-VSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQIL 393
Query: 78 IRGYNNDGEPNNSPEPLPPEKVGIVFQ---FPERYFVADNV--------LDEVIFGWPRQ 126
I G + + S + + VFQ R + +N+ +EV
Sbjct: 394 IDGIDINTVTRESLR----KSIATVFQDAGLFNRS-IRENIRLGREGATDEEVYEAAKAA 448
Query: 127 SGS----IQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLL 182
+ + Y L VG G L SGG ++RLA+A +++ +L
Sbjct: 449 AAHDFILKRSNGYDTL--------VGERGNRL-------SGGERQRLAIARAILKNAPIL 493
Query: 183 ILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLK-----EMAALVDHSWRMDMGGF 237
+LDE + LD + A V + L+K T +++H L ++ +D ++ G F
Sbjct: 494 VLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVRNADLVLFLDQGRLIEKGSF 553
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 585 |
| >gnl|CDD|224166 COG1245, COG1245, Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Score = 63.1 bits (154), Expect = 2e-11
Identities = 50/202 (24%), Positives = 84/202 (41%), Gaps = 49/202 (24%)
Query: 50 IFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFP--- 106
I G +G GK+T L++LAG KP N G + PP ++ +F
Sbjct: 105 ILGPNGIGKSTALKILAGELKP-----------NLGRYED-----PPSWDEVIKRFRGTE 148
Query: 107 -ERYF--VADNVLDEVIFGWPRQSGSIQLKEYLAL-----------------NLQRAINW 146
+ YF + + L V Q + + +
Sbjct: 149 LQNYFKKLYEGELRAVH--------KPQYVDLIPKVVKGKVGELLKKVDERGKFDEVVER 200
Query: 147 VGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHL 206
+GL+ LD+D LSGG +R+A+A L++ D+ DEP + LD + R + ++++ L
Sbjct: 201 LGLEN-VLDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIREL 259
Query: 207 -KKELTILVVSHDLKEMAALVD 227
+ ++VV HDL + L D
Sbjct: 260 AEDGKYVIVVEHDLAVLDYLSD 281
|
Length = 591 |
| >gnl|CDD|184587 PRK14241, PRK14241, phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 61.7 bits (150), Expect = 3e-11
Identities = 57/198 (28%), Positives = 99/198 (50%), Gaps = 9/198 (4%)
Query: 38 VSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP-- 95
V+ ++ +S G SG GK+T+L+ L + + G+ DGE P P
Sbjct: 23 VNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGVDPVA 82
Query: 96 -PEKVGIVFQFPERY---FVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG 151
+G+VFQ P + + DNV+ + R L E + +L+ A W +
Sbjct: 83 VRRTIGMVFQRPNPFPTMSIRDNVVAGLKLNGVRNKK--DLDELVEKSLRGANLWNEVK- 139
Query: 152 TSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELT 211
LDK LSGG ++RL +A + PD+L++DEP + LD + + L+ LK++ T
Sbjct: 140 DRLDKPGGGLSGGQQQRLCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYT 199
Query: 212 ILVVSHDLKEMAALVDHS 229
I++V+H++++ A + D +
Sbjct: 200 IVIVTHNMQQAARVSDQT 217
|
Length = 258 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 62.5 bits (152), Expect = 3e-11
Identities = 54/211 (25%), Positives = 102/211 (48%), Gaps = 30/211 (14%)
Query: 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDG-EPNNS 90
V L V+ ++ + G +G+GK+TL+++L+G+ +PT G+I I N + + +
Sbjct: 18 VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHKLA 77
Query: 91 PEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINW---- 146
+ +GI++Q E + + + E ++ G K+ +N+ I+W
Sbjct: 78 AQ----LGIGIIYQ--ELSVIDELTVLENLY-----IGRHLTKKVCGVNI---IDWREMR 123
Query: 147 ---------VGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARA 197
VGL LD+ +LS +K+ L +A L+ ++I+DEP + L K
Sbjct: 124 VRAAMMLLRVGLK-VDLDEKVANLSISHKQMLEIAKTLMLDAKVIIMDEPTSSLTNKEVD 182
Query: 198 DVVKLLKHLKKELT-ILVVSHDLKEMAALVD 227
+ ++ L+KE T I+ +SH L E+ + D
Sbjct: 183 YLFLIMNQLRKEGTAIVYISHKLAEIRRICD 213
|
Length = 510 |
| >gnl|CDD|184127 PRK13540, PRK13540, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 60.3 bits (146), Expect = 3e-11
Identities = 55/189 (29%), Positives = 87/189 (46%), Gaps = 24/189 (12%)
Query: 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93
+L +SF LP + G +G+GKTTLL+L+AGL P G I + + +
Sbjct: 16 LLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKDLCTYQKQ 75
Query: 94 L--PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLAL-NLQRAINW-VGL 149
L + GI R +N L ++ F G++ + E L +L+ I++ GL
Sbjct: 76 LCFVGHRSGINPYLTLR----ENCLYDIHF----SPGAVGITELCRLFSLEHLIDYPCGL 127
Query: 150 DGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVV-KLLKHLKK 208
LS G KR++AL + L +LDEPL LD + ++ K+ +H K
Sbjct: 128 -----------LSSGQKRQVALLRLWMSKAKLWLLDEPLVALDELSLLTIITKIQEHRAK 176
Query: 209 ELTILVVSH 217
+L+ SH
Sbjct: 177 GGAVLLTSH 185
|
Length = 200 |
| >gnl|CDD|236688 PRK10418, nikD, nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Score = 60.9 bits (148), Expect = 4e-11
Identities = 66/238 (27%), Positives = 110/238 (46%), Gaps = 34/238 (14%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKT----TLLQLL-AGLSKPT 72
+E+R+++ + V GVS +L + G SGSGK+ L +L AG+ + T
Sbjct: 5 IELRNIALQAAQPLVH---GVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQ-T 60
Query: 73 SGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYF-----VADNVLDEVIFGWPRQS 127
+G + + DG+P +P L K+ + Q P F + + +
Sbjct: 61 AGRVLL-----DGKPV-APCALRGRKIATIMQNPRSAFNPLHTMHTHARETC-----LAL 109
Query: 128 GSIQLKEYLALNLQRAINWVGLD--GTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILD 185
G K L A+ VGL+ L P +SGG +R+ +A+ L+ +I D
Sbjct: 110 G----KPADDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRMMIALALLCEAPFIIAD 165
Query: 186 EPLAGLDWKARADVVKLLKHLKKE--LTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241
EP LD A+A ++ LL+ + ++ L +L+V+HD+ +A L D M G +VEQ
Sbjct: 166 EPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGR-IVEQ 222
|
Length = 254 |
| >gnl|CDD|184198 PRK13638, cbiO, cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (147), Expect = 5e-11
Identities = 59/226 (26%), Positives = 103/226 (45%), Gaps = 17/226 (7%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
L D+ +R V L G++ + G +G GK+TL L+GL +P G++
Sbjct: 2 LATSDLWFRYQDEPV--LKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVL 59
Query: 78 IRGYNNDGEP-NNSPEPLPP--EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKE 134
+G +P + S L ++V VFQ PE+ ++ ++ F R G +
Sbjct: 60 WQG-----KPLDYSKRGLLALRQQVATVFQDPEQQIFYTDIDSDIAFSL-RNLGVPE--A 111
Query: 135 YLALNLQRAINWVGLDGTSLDKDP-HSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDW 193
+ + A+ V D P LS G K+R+A+A LV L+LDEP AGLD
Sbjct: 112 EITRRVDEALTLV--DAQHFRHQPIQCLSHGQKKRVAIAGALVLQARYLLLDEPTAGLDP 169
Query: 194 KARADVVKLLKHLKKELT-ILVVSHDLKEMAALVDHSWRMDMGGFL 238
R ++ +++ + + +++ SHD+ + + D + + G L
Sbjct: 170 AGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQIL 215
|
Length = 271 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 61.9 bits (151), Expect = 5e-11
Identities = 66/226 (29%), Positives = 98/226 (43%), Gaps = 57/226 (25%)
Query: 27 PPGTQVDILNGVSFS-LPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDG 85
PP + IL +S S P G++ G +G+GK+TLL+++AG+ K +G
Sbjct: 15 PPKKE--ILKDISLSFFPGAKIGVL-GLNGAGKSTLLRIMAGVDKEFNGEA--------- 62
Query: 86 EPNNSPEPLPPEKVGIVFQFPE-------RYFVADNV---------LDEV--IFGWPRQS 127
P P KVG + Q P+ R V + V +E+ F P
Sbjct: 63 ------RPAPGIKVGYLPQEPQLDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDAD 116
Query: 128 GSIQLKEYLAL----------NLQRAINWVGLDGTSL---DKDPHSLSGGYKRRLALAIQ 174
L E L +L R + + +D D D LSGG +RR+AL
Sbjct: 117 MDALLAEQAELQEIIDAADAWDLDRKLE-IAMDALRCPPWDADVTKLSGGERRRVALCRL 175
Query: 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKEL--TILVVSHD 218
L+ PD+L+LDEP LD A+ V L+ +E T++ V+HD
Sbjct: 176 LLSKPDMLLLDEPTNHLD----AESVAWLEQHLQEYPGTVVAVTHD 217
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 59.0 bits (144), Expect = 6e-11
Identities = 35/100 (35%), Positives = 55/100 (55%), Gaps = 13/100 (13%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPE-KSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSI 76
LE+R ++ R G + L+GVS S+ + L+ G +G+GK+TL+++L+GL KP SG I
Sbjct: 1 LELRGITKRFGGVKA--LDGVSLSVRRGEVHALL-GENGAGKSTLMKILSGLYKPDSGEI 57
Query: 77 NIRGYNNDGEPNNSPEPLPPEKVGI--VFQFP--ERYFVA 112
+ DG+ + P + GI V+Q ER V
Sbjct: 58 LV-----DGKEVSFASPRDARRAGIAMVYQLSVGERQMVE 92
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 60.8 bits (148), Expect = 9e-11
Identities = 68/210 (32%), Positives = 102/210 (48%), Gaps = 32/210 (15%)
Query: 23 VSY--RPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRG 80
VSY RP IL+ +S+ + I G +G+GK+TLL L+ G P +G
Sbjct: 268 VSYNDRP------ILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITG-DHP-------QG 313
Query: 81 YNND----GEPNNSPEPL--PPEKVGIVF-QFPERYFVADNVLDEVIFGWPRQSGSIQLK 133
Y+ND G S E + + +G V Y V+ +V + ++ G+ SI +
Sbjct: 314 YSNDLTLFGRRRGSGETIWDIKKHIGYVSSSLHLDYRVSTSVRNVILSGF---FDSIGIY 370
Query: 134 EYLALNLQR-AINW---VGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLA 189
+ ++ Q+ A W +G+D + D HSLS G +R + LV+ P LLILDEPL
Sbjct: 371 QAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLALIVRALVKHPTLLILDEPLQ 430
Query: 190 GLDWKARADVVKLLKHL--KKELTILVVSH 217
GLD R V + + L + E +L VSH
Sbjct: 431 GLDPLNRQLVRRFVDVLISEGETQLLFVSH 460
|
Length = 490 |
| >gnl|CDD|130324 TIGR01257, rim_protein, retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Score = 60.8 bits (147), Expect = 1e-10
Identities = 61/215 (28%), Positives = 103/215 (47%), Gaps = 16/215 (7%)
Query: 13 CDYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPT 72
C + +++ + S RP VD LN + E G +G+GKTT L +L GL PT
Sbjct: 930 CVKNLVKIFEPSGRP---AVDRLN---ITFYENQITAFLGHNGAGKTTTLSILTGLLPPT 983
Query: 73 SGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQL 132
SG++ + G D E N + +G+ Q F V + ++F + + G
Sbjct: 984 SGTVLVGG--KDIETNLD---AVRQSLGMCPQH-NILFHHLTVAEHILF-YAQLKGRSW- 1035
Query: 133 KEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLD 192
E L ++ + GL +++ LSGG +R+L++AI V +++LDEP +G+D
Sbjct: 1036 -EEAQLEMEAMLEDTGLHHKR-NEEAQDLSGGMQRKLSVAIAFVGDAKVVVLDEPTSGVD 1093
Query: 193 WKARADVVKLLKHLKKELTILVVSHDLKEMAALVD 227
+R + LL + TI++ +H + E L D
Sbjct: 1094 PYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGD 1128
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease [Transport and binding proteins, Other]. Length = 2272 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 1e-10
Identities = 64/227 (28%), Positives = 106/227 (46%), Gaps = 45/227 (19%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
L R +S + G V++L G+ F+L + G +G+GK+TL++++AG+ P SG++
Sbjct: 12 LCARSISKQYSG--VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLE 69
Query: 78 IRGYNNDGEPNNSPEPLPPEKVGI--VFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEY 135
I G P P ++GI V Q P F +V + ++FG P++ S+Q +
Sbjct: 70 I-----GGNPCARLTPAKAHQLGIYLVPQEP-LLFPNLSVKENILFGLPKRQASMQKMKQ 123
Query: 136 LALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAI---QLVQV-------PDLLILD 185
L L G L D S +G +L + Q+V++ +LILD
Sbjct: 124 LLAAL----------GCQL--DLDSSAG------SLEVADRQIVEILRGLMRDSRILILD 165
Query: 186 EPLAGLDWKARADVVKLLKHLKKELT----ILVVSHDLKEMAALVDH 228
EP A L A+ +L +++ L I+ +SH L E+ L D
Sbjct: 166 EPTASL---TPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADR 209
|
Length = 510 |
| >gnl|CDD|213211 cd03244, ABCC_MRP_domain2, ATP-binding cassette domain 2 of multidrug resistance-associated protein | Back alignment and domain information |
|---|
Score = 59.0 bits (144), Expect = 1e-10
Identities = 67/224 (29%), Positives = 106/224 (47%), Gaps = 50/224 (22%)
Query: 18 LEVRDVS--YRPPGTQVDILNGVSFSL-PEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSG 74
+E ++VS YRP V L +SFS+ P + G I GR+GSGK++LL L L + +SG
Sbjct: 3 IEFKNVSLRYRPNLPPV--LKNISFSIKPGEKVG-IVGRTGSGKSSLLLALFRLVELSSG 59
Query: 75 SINIRGYNNDGEPNNSPEPLPPEKV----GIVFQFPERYFVADNVLDEVIFGWPRQSGSI 130
SI I DG + + + I+ Q D V+F SG+I
Sbjct: 60 SILI-----DGVDISK---IGLHDLRSRISIIPQ------------DPVLF-----SGTI 94
Query: 131 Q-----LKEYLALNLQRAINWVGLD----------GTSLDKDPHSLSGGYKRRLALAIQL 175
+ EY L +A+ VGL T +++ +LS G ++ L LA L
Sbjct: 95 RSNLDPFGEYSDEELWQALERVGLKEFVESLPGGLDTVVEEGGENLSVGQRQLLCLARAL 154
Query: 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDL 219
++ +L+LDE A +D + A + K ++ K+ T+L ++H L
Sbjct: 155 LRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRL 198
|
The ABC subfamily C is also known as MRP (multidrug resistance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. Length = 221 |
| >gnl|CDD|236707 PRK10522, PRK10522, multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Score = 60.4 bits (147), Expect = 1e-10
Identities = 59/220 (26%), Positives = 96/220 (43%), Gaps = 47/220 (21%)
Query: 23 VSYRPPGTQVDILNGVSFSLPEKSFG------------LIF--GRSGSGKTTLLQLLAGL 68
P Q L V+F+ + F L+F G +GSGK+TL LL GL
Sbjct: 313 RPQAFPDWQTLELRNVTFAYQDNGFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGL 372
Query: 69 SKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERY-------FVADNVLDEVIF 121
+P SG I + DG+P + + PE Y F ++ D+++
Sbjct: 373 YQPQSGEILL-----DGKP-------------VTAEQPEDYRKLFSAVFTDFHLFDQLLG 414
Query: 122 GWPRQSGSIQLKEYLA-LNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPD 180
+ + ++++L L + + ++L LS G K+RLAL + L + D
Sbjct: 415 PEGKPANPALVEKWLERLKMAHKLELEDGRISNLK-----LSKGQKKRLALLLALAEERD 469
Query: 181 LLILDEPLAGLDWKARADVVKLLKHLKKEL--TILVVSHD 218
+L+LDE A D R + ++L L +E+ TI +SHD
Sbjct: 470 ILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHD 509
|
Length = 547 |
| >gnl|CDD|182036 PRK09700, PRK09700, D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 60.2 bits (146), Expect = 2e-10
Identities = 60/222 (27%), Positives = 104/222 (46%), Gaps = 24/222 (10%)
Query: 19 EVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINI 78
EVR+V+ R + +SFS+ G GSG+T L+ L G+ K G I +
Sbjct: 267 EVRNVTSRDRKK----VRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRL 322
Query: 79 RGYNNDGEPNNSPEPLPPEKVGIVFQFPER----YF----VADNVLDEVIFGWPRQSGSI 130
G D P + PL K G+ + R +F +A N+ G++
Sbjct: 323 NG--KDISPRS---PLDAVKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAM 377
Query: 131 QL----KEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDE 186
L E QR + + L S++++ LSGG ++++ ++ L P+++I DE
Sbjct: 378 GLFHEVDEQRTAENQREL--LALKCHSVNQNITELSGGNQQKVLISKWLCCCPEVIIFDE 435
Query: 187 PLAGLDWKARADVVKLLKHLKKE-LTILVVSHDLKEMAALVD 227
P G+D A+A++ K+++ L + IL+VS +L E+ + D
Sbjct: 436 PTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCD 477
|
Length = 510 |
| >gnl|CDD|172747 PRK14259, PRK14259, phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 59.4 bits (144), Expect = 2e-10
Identities = 59/219 (26%), Positives = 110/219 (50%), Gaps = 28/219 (12%)
Query: 16 SCLEVRDV--SYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQ-------LLA 66
+ +++V SY GT + N V +P + G SG GK+T+L+ L+
Sbjct: 12 IIISLQNVTISY---GTFEAVKN-VFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIE 67
Query: 67 GLSKPTSGSINIRGYNNDGEPNNSPEPLPPE---KVGIVFQFPERYFVADNVLDEVIFGW 123
G S G + DG P P E ++G+VFQ P + ++ + + FG
Sbjct: 68 GCS--LKGRVLF-----DGTDLYDPRVDPVEVRRRIGMVFQQPNPF--PKSIYENIAFG- 117
Query: 124 PRQSG-SIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLL 182
R +G + + E + +L++A W L++ +SLSGG ++RL +A + P+++
Sbjct: 118 ARINGYTGDMDELVERSLRKAAVWDECK-DKLNESGYSLSGGQQQRLCIARTIAIEPEVI 176
Query: 183 ILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKE 221
++DEP + LD + + + + LKK TI++V+H++++
Sbjct: 177 LMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQ 215
|
Length = 269 |
| >gnl|CDD|184214 PRK13657, PRK13657, cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Score = 60.0 bits (146), Expect = 2e-10
Identities = 65/238 (27%), Positives = 107/238 (44%), Gaps = 39/238 (16%)
Query: 19 EVRDVSYRPPGTQVDILNGVSFS-LPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSI- 76
E DVS+ ++ + VSF P ++ ++ G +G+GK+TL+ LL + P SG I
Sbjct: 336 EFDDVSFSYDNSRQGV-EDVSFEAKPGQTVAIV-GPTGAGKSTLINLLQRVFDPQSGRIL 393
Query: 77 ----NIRGYNNDGEPNNSPEPLPPEKVGIVFQFP---ERYFVADNVLDEVIFGWPRQSGS 129
+IR N + +VFQ R + DN+ G P +
Sbjct: 394 IDGTDIRTVTRASLRRN---------IAVVFQDAGLFNRS-IEDNIR----VGRP---DA 436
Query: 130 IQLKEYLALNLQRAINWV-----GLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLIL 184
+ A +A +++ G D T + + LSGG ++RLA+A L++ P +LIL
Sbjct: 437 TDEEMRAAAERAQAHDFIERKPDGYD-TVVGERGRQLSGGERQRLAIARALLKDPPILIL 495
Query: 185 DEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEM--AALV---DHSWRMDMGGF 237
DE + LD + A V L L K T +++H L + A + D+ ++ G F
Sbjct: 496 DEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTVRNADRILVFDNGRVVESGSF 553
|
Length = 588 |
| >gnl|CDD|233665 TIGR01978, sufC, FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Score = 58.4 bits (142), Expect = 2e-10
Identities = 56/202 (27%), Positives = 95/202 (47%), Gaps = 32/202 (15%)
Query: 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAG--LSKPTSGSINIRGYN-NDGEPNNS 90
IL GV+ ++ + I G +GSGK+TL + +AG + TSG+I +G + + EP+
Sbjct: 15 ILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPD-- 72
Query: 91 PEPLPPEKVG----IVFQFPE-------RYFV--ADNVLDEVIFGWPRQSGSIQLKEYLA 137
E+ + FQ+PE F+ A N R + L ++L
Sbjct: 73 ------ERARAGLFLAFQYPEEIPGVSNLEFLRSALNARRS-----ARGEEPLDLLDFLK 121
Query: 138 LNLQRAINWVGLDGTSLDKDPH-SLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKAR 196
L L+ + +G+D L++ + SGG K+R + + P L ILDE +GLD A
Sbjct: 122 L-LKAKLALLGMDEEFLNRSVNEGFSGGEKKRNEILQMALLEPKLAILDEIDSGLDIDAL 180
Query: 197 ADVVKLLKHLKKELT-ILVVSH 217
V + + L++ L+++H
Sbjct: 181 KIVAEGINRLREPDRSFLIITH 202
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PMID:12554644) or associated with the membrane (PMID:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA [Biosynthesis of cofactors, prosthetic groups, and carriers, Other]. Length = 243 |
| >gnl|CDD|233596 TIGR01846, type_I_sec_HlyB, type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Score = 59.8 bits (145), Expect = 3e-10
Identities = 51/208 (24%), Positives = 101/208 (48%), Gaps = 17/208 (8%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
+ ++ +R ++L+ ++ + F I G SGSGK+TL +LL L P G +
Sbjct: 456 ITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVL 515
Query: 78 IRGYNNDGEPNNSPEPLPPEK-VGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYL 136
+ DG +P + +G+V Q E + ++ D + P
Sbjct: 516 V-----DGVDLAIADPAWLRRQMGVVLQ--ENVLFSRSIRDNIALCNPGAPFE---HVIH 565
Query: 137 ALNLQRAINWV-----GLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGL 191
A L A +++ G + T + + +LSGG ++R+A+A LV P +LI DE + L
Sbjct: 566 AAKLAGAHDFISELPQGYN-TEVGEKGANLSGGQRQRIAIARALVGNPRILIFDEATSAL 624
Query: 192 DWKARADVVKLLKHLKKELTILVVSHDL 219
D+++ A +++ ++ + + T+++++H L
Sbjct: 625 DYESEALIMRNMREICRGRTVIIIAHRL 652
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion [Protein fate, Protein and peptide secretion and trafficking]. Length = 694 |
| >gnl|CDD|185336 PRK15439, PRK15439, autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Score = 58.9 bits (143), Expect = 4e-10
Identities = 58/222 (26%), Positives = 101/222 (45%), Gaps = 23/222 (10%)
Query: 28 PGTQVDILNG-----VSFSL-PEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGY 81
P V+ L G +S + + GL G G+G+T L + L GL G I +
Sbjct: 267 PVLTVEDLTGEGFRNISLEVRAGEILGLA-GVVGAGRTELAETLYGLRPARGGRIML--- 322
Query: 82 NNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWP-------RQSGSIQLKE 134
+G+ N+ G+V+ PE + LD + W R+ I+
Sbjct: 323 --NGKEINALSTAQRLARGLVY-LPEDRQSSGLYLDAPL-AWNVCALTHNRRGFWIKPAR 378
Query: 135 YLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWK 194
A+ L+R + + ++ +LSGG ++++ +A L P LLI+DEP G+D
Sbjct: 379 ENAV-LERYRRALNIKFNHAEQAARTLSGGNQQKVLIAKCLEASPQLLIVDEPTRGVDVS 437
Query: 195 ARADVVKLLKHLKKE-LTILVVSHDLKEMAALVDHSWRMDMG 235
AR D+ +L++ + + + +L +S DL+E+ + D M G
Sbjct: 438 ARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQG 479
|
Length = 510 |
| >gnl|CDD|163508 TIGR03796, NHLM_micro_ABC1, NHLM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Score = 59.2 bits (144), Expect = 4e-10
Identities = 62/225 (27%), Positives = 103/225 (45%), Gaps = 53/225 (23%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
+E+R++++ + ++ S +L + G SGSGK+T+ +L+AGL +P SG I
Sbjct: 478 VELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEIL 537
Query: 78 IRGYNNDGEPNNSPEPLPPE----KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLK 133
DG P +P E V +V Q D +F G++ +
Sbjct: 538 F-----DGIPREE---IPREVLANSVAMVDQ------------DIFLFE-----GTV--R 570
Query: 134 EYLAL--------NLQRA-----INWV------GLDGTSLDKDPHSLSGGYKRRLALAIQ 174
+ L L +L RA I+ V G D L + +LSGG ++RL +A
Sbjct: 571 DNLTLWDPTIPDADLVRACKDAAIHDVITSRPGGYD-AELAEGGANLSGGQRQRLEIARA 629
Query: 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDL 219
LV+ P +LILDE + LD + + L+ ++ T ++V+H L
Sbjct: 630 LVRNPSILILDEATSALDPETEKIIDDNLR--RRGCTCIIVAHRL 672
|
This protein describes a multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHLM, Nitrile Hydratase Leader Microcin [Transport and binding proteins, Amino acids, peptides and amines, Cellular processes, Biosynthesis of natural products]. Length = 710 |
| >gnl|CDD|213269 cd03369, ABCC_NFT1, ATP-binding cassette domain 2 of NFT1, subfamily C | Back alignment and domain information |
|---|
Score = 57.0 bits (138), Expect = 5e-10
Identities = 59/225 (26%), Positives = 93/225 (41%), Gaps = 39/225 (17%)
Query: 18 LEVRD--VSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGS 75
+EV + V Y P V L VSF + I GR+G+GK+TL+ L + G
Sbjct: 7 IEVENLSVRYAPDLPPV--LKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGK 64
Query: 76 INIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLK-- 133
I I G + P + I+ Q D +F SG+I+
Sbjct: 65 IEIDGIDISTIPLEDLR----SSLTIIPQ------------DPTLF-----SGTIRSNLD 103
Query: 134 ---EYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAG 190
EY + A+ + + +LS G ++ L LA L++ P +L+LDE A
Sbjct: 104 PFDEYSDEEIYGAL--------RVSEGGLNLSQGQRQLLCLARALLKRPRVLVLDEATAS 155
Query: 191 LDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMG 235
+D+ A + K ++ TIL ++H L+ + D MD G
Sbjct: 156 IDYATDALIQKTIREEFTNSTILTIAHRLRTIIDY-DKILVMDAG 199
|
Domain 2 of NFT1 (New full-length MRP-type transporter 1). NFT1 belongs to the MRP (multidrug resistance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. Length = 207 |
| >gnl|CDD|182336 PRK10253, PRK10253, iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 57.7 bits (139), Expect = 6e-10
Identities = 53/203 (26%), Positives = 95/203 (46%), Gaps = 19/203 (9%)
Query: 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEP-NNSPE 92
+ ++ +P+ F I G +G GK+TLL+ L+ L P G + + DGE +
Sbjct: 22 VAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWL-----DGEHIQHYAS 76
Query: 93 PLPPEKVGIVFQFPERYFVADNVLDEVIFG--WPRQSGSIQLKEYLALNLQRAINWVG-- 148
++G++ Q D + E++ +P Q + ++ + +A+ G
Sbjct: 77 KEVARRIGLLAQ--NATTPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGIT 134
Query: 149 -LDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLK 207
L S+D +LSGG ++R +A+ L Q +++LDEP LD + D+++LL L
Sbjct: 135 HLADQSVD----TLSGGQRQRAWIAMVLAQETAIMLLDEPTTWLDISHQIDLLELLSELN 190
Query: 208 KE--LTILVVSHDLKEMAALVDH 228
+E T+ V HDL + H
Sbjct: 191 REKGYTLAAVLHDLNQACRYASH 213
|
Length = 265 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 58.6 bits (143), Expect = 6e-10
Identities = 65/235 (27%), Positives = 95/235 (40%), Gaps = 75/235 (31%)
Query: 27 PPGTQVDILNGVSFS-LPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDG 85
PP Q IL +S S P G++ G +G+GK+TLL+++AG+ K +G
Sbjct: 17 PPKKQ--ILKDISLSFFPGAKIGVL-GLNGAGKSTLLRIMAGVDKE-----------FEG 62
Query: 86 EPNNSPEPLPPEKVGIVFQFP---ERYFVADNVLDEVIFGWPRQSGSIQ--LKEYLALN- 139
E P P KVG + Q P V +NV + V ++ L + +
Sbjct: 63 EAR----PAPGIKVGYLPQEPQLDPEKTVRENVEEGV--------AEVKAALDRFNEIYA 110
Query: 140 ------------------LQRAINWVGLDGTSL----------------DKDPHSLSGGY 165
LQ I+ D L D LSGG
Sbjct: 111 AYAEPDADFDALAAEQGELQEIID--AADAWDLDSQLEIAMDALRCPPWDAKVTKLSGGE 168
Query: 166 KRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLL-KHLKK-ELTILVVSHD 218
+RR+AL L++ PD+L+LDEP LD A+ V L + L T++ V+HD
Sbjct: 169 RRRVALCRLLLEKPDMLLLDEPTNHLD----AESVAWLEQFLHDYPGTVVAVTHD 219
|
Length = 556 |
| >gnl|CDD|182906 PRK11022, dppD, dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 57.4 bits (139), Expect = 9e-10
Identities = 33/95 (34%), Positives = 53/95 (55%), Gaps = 7/95 (7%)
Query: 141 QRAINWVGLDG-----TSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKA 195
QRAI+ + G + LD PH LSGG +R+ +A+ + P LLI DEP LD
Sbjct: 129 QRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQRVMIAMAIACRPKLLIADEPTTALDVTI 188
Query: 196 RADVVKLLKHL--KKELTILVVSHDLKEMAALVDH 228
+A +++LL L K+ + +++++HDL +A
Sbjct: 189 QAQIIELLLELQQKENMALVLITHDLALVAEAAHK 223
|
Length = 326 |
| >gnl|CDD|226622 COG4138, BtuD, ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Score = 56.8 bits (137), Expect = 9e-10
Identities = 57/212 (26%), Positives = 90/212 (42%), Gaps = 45/212 (21%)
Query: 50 IFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERY 109
+ G +G+GK+TLL +AG++ SGSI G P E R
Sbjct: 30 LVGPNGAGKSTLLARMAGMT-SGSGSIQFAG-------------QPLEAWSATELARHRA 75
Query: 110 FVADNVLDEVIFGWPRQSGSIQLK--EYLALN-----LQRAINWV----GLDGTSLDKDP 158
+++ Q+ + YL L+ +N V LD L +
Sbjct: 76 YLSQQ-----------QTPPFAMPVWHYLTLHQPDKTRTELLNDVAGALALD-DKLGRST 123
Query: 159 HSLSGGYKRRLALAIQLVQV-PD------LLILDEPLAGLDWKARADVVKLLKHLKKE-L 210
+ LSGG +R+ LA ++Q+ PD LL+LDEP+ LD ++ + +LL L ++ L
Sbjct: 124 NQLSGGEWQRVRLAAVVLQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGL 183
Query: 211 TILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242
I++ SHDL +W + G L R
Sbjct: 184 AIVMSSHDLNHTLRHAHRAWLLKRGKLLASGR 215
|
Length = 248 |
| >gnl|CDD|184037 PRK13409, PRK13409, putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Score = 57.1 bits (139), Expect = 1e-09
Identities = 53/191 (27%), Positives = 87/191 (45%), Gaps = 44/191 (23%)
Query: 50 IFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKV-----GIVFQ 104
I G +G GKTT +++L+G P N G+ P ++V G Q
Sbjct: 104 ILGPNGIGKTTAVKILSGELIP-----------NLGDYEEEPSW---DEVLKRFRGTELQ 149
Query: 105 FPERYF--VADNVLD--------EVIFGWPRQ-SGSIQLKEYLALNLQRA-----INWVG 148
YF + + + ++I P+ G + +E L +R + +G
Sbjct: 150 ---NYFKKLYNGEIKVVHKPQYVDLI---PKVFKGKV--RELLKKVDERGKLDEVVERLG 201
Query: 149 LDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK 208
L+ LD+D LSGG +R+A+A L++ D DEP + LD + R +V +L++ L +
Sbjct: 202 LE-NILDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAE 260
Query: 209 ELTILVVSHDL 219
+LVV HDL
Sbjct: 261 GKYVLVVEHDL 271
|
Length = 590 |
| >gnl|CDD|130262 TIGR01194, cyc_pep_trnsptr, cyclic peptide transporter | Back alignment and domain information |
|---|
Score = 57.7 bits (139), Expect = 1e-09
Identities = 50/214 (23%), Positives = 85/214 (39%), Gaps = 34/214 (15%)
Query: 18 LEVRDVSYRPPGTQVD---ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSG 74
+E++DV P + L + + + I G +G GK+TL +L GL P G
Sbjct: 338 IELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEG 397
Query: 75 SINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSI-QLK 133
I + G + + F ++ D++I + S+ +
Sbjct: 398 EILLDG-----------AAVSADSRDDYRDLFSAIFADFHLFDDLIGPDEGEHASLDNAQ 446
Query: 134 EYLA-LNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLD 192
+YL L + + G S LS G ++RLAL ++ +L+ DE
Sbjct: 447 QYLQRLEIADKVKIEDG-GFSTTTA---LSTGQQKRLALICAWLEDRPILLFDE------ 496
Query: 193 WKARAD-------VVKLLKHLKKE-LTILVVSHD 218
W A D +LL LK++ TI+++SHD
Sbjct: 497 WAADQDPAFKRFFYEELLPDLKRQGKTIIIISHD 530
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake [Transport and binding proteins, Amino acids, peptides and amines, Transport and binding proteins, Other]. Length = 555 |
| >gnl|CDD|185049 PRK15093, PRK15093, antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 56.3 bits (136), Expect = 2e-09
Identities = 55/224 (24%), Positives = 103/224 (45%), Gaps = 14/224 (6%)
Query: 18 LEVRD--VSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGS 75
L++R+ + ++ V ++ VS +L E + G SGSGK+ + + + G++K
Sbjct: 4 LDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRV 63
Query: 76 INIRGYNNDGE----PNNSPEPLPPEKVGIVFQFPERYF-VADNVLDEVIFGWPRQSGSI 130
R +D + L V ++FQ P+ ++ V +++ P +
Sbjct: 64 TADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKG 123
Query: 131 QLKEYLALNLQRAINWVGLDGTSLDKD-----PHSLSGGYKRRLALAIQLVQVPDLLILD 185
+ + +RAI + G KD P+ L+ G +++ +AI L P LLI D
Sbjct: 124 RWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTEGECQKVMIAIALANQPRLLIAD 183
Query: 186 EPLAGLDWKARADVVKLLKHLKKE--LTILVVSHDLKEMAALVD 227
EP ++ +A + +LL L + TIL++SHDL+ ++ D
Sbjct: 184 EPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWAD 227
|
Length = 330 |
| >gnl|CDD|213183 cd03216, ABC_Carb_Monos_I, First domain of the ATP-binding cassette component of monosaccharide transport system | Back alignment and domain information |
|---|
Score = 54.4 bits (132), Expect = 3e-09
Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 159 HSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKE-LTILVVSH 217
+ LS G ++ + +A L + LLILDEP A L + K+++ L+ + + ++ +SH
Sbjct: 81 YQLSVGERQMVEIARALARNARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISH 140
Query: 218 DLKEMAALVD 227
L E+ + D
Sbjct: 141 RLDEVFEIAD 150
|
This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. Length = 163 |
| >gnl|CDD|235150 PRK03695, PRK03695, vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Score = 55.3 bits (134), Expect = 3e-09
Identities = 51/191 (26%), Positives = 83/191 (43%), Gaps = 45/191 (23%)
Query: 50 IFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEP-------------NNSPEPLPP 96
+ G +G+GK+TLL +AGL P SGSI G + +P P
Sbjct: 27 LVGPNGAGKSTLLARMAGLL-PGSGSIQFAGQPLEAWSAAELARHRAYLSQQQTPPFAMP 85
Query: 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDK 156
VFQ+ + + V + ++ L + L ++ +
Sbjct: 86 -----VFQYLTLHQPDKTRTEAVASALNEVAEALGLDDKLGRSVNQ-------------- 126
Query: 157 DPHSLSGGYKRRLALAIQLVQV-PD------LLILDEPLAGLDWKARADVVKLLKHL-KK 208
LSGG +R+ LA ++QV PD LL+LDEP+ LD +A + +LL L ++
Sbjct: 127 ----LSGGEWQRVRLAAVVLQVWPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQ 182
Query: 209 ELTILVVSHDL 219
+ +++ SHDL
Sbjct: 183 GIAVVMSSHDL 193
|
Length = 248 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 55.7 bits (135), Expect = 5e-09
Identities = 65/219 (29%), Positives = 96/219 (43%), Gaps = 62/219 (28%)
Query: 19 EVRDVSYRPPGTQVDILNGVSFS-LPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
E+ +V+Y+ G Q ++ S LI G +G GKTTLL+L+ G + SG I+
Sbjct: 321 EMENVNYQIDGKQ--LVKDFSAQVQRGDKIALI-GPNGCGKTTLLKLMLGQLQADSGRIH 377
Query: 78 I------------RGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLD---EV-IF 121
R L PEK V DN+ + EV +
Sbjct: 378 CGTKLEVAYFDQHR------------AELDPEKT-----------VMDNLAEGKQEVMVN 414
Query: 122 GWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDL 181
G PR L+++L + +RA+ V +LSGG + RL LA ++ +L
Sbjct: 415 GRPRHVLGY-LQDFL-FHPKRAMTPV-----------KALSGGERNRLLLARLFLKPSNL 461
Query: 182 LILDEPLAGLDWKARADVVKLLKHLKKEL--TILVVSHD 218
LILDEP LD + ++LL+ L T+L+VSHD
Sbjct: 462 LILDEPTNDLD----VETLELLEELLDSYQGTVLLVSHD 496
|
Length = 635 |
| >gnl|CDD|182342 PRK10261, PRK10261, glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 6e-09
Identities = 31/86 (36%), Positives = 53/86 (61%), Gaps = 2/86 (2%)
Query: 152 TSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELT 211
T L + PH LSGG ++R+ +A+ L P +LI DEP LD +A +++L+K L+KE++
Sbjct: 160 TILSRYPHQLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMS 219
Query: 212 --ILVVSHDLKEMAALVDHSWRMDMG 235
++ ++HD+ +A + D M G
Sbjct: 220 MGVIFITHDMGVVAEIADRVLVMYQG 245
|
Length = 623 |
| >gnl|CDD|213237 cd03270, ABC_UvrA_I, ATP-binding cassette domain I of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 54.2 bits (131), Expect = 7e-09
Identities = 63/237 (26%), Positives = 95/237 (40%), Gaps = 71/237 (29%)
Query: 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLL---------------------QLLAGLSKPTS 73
L V +P +I G SGSGK++L Q L + KP
Sbjct: 11 LKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMDKPDV 70
Query: 74 GSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQS-GSI-Q 131
SI E L P + I ++ + N PR + G++ +
Sbjct: 71 DSI---------------EGLSP-AIAI-----DQKTTSRN---------PRSTVGTVTE 100
Query: 132 LKEYLALNLQRA--------INWVGLDGTSLDKDPHSLSGGYKRRLALAIQ----LVQVP 179
+ +YL L R + VGL +L + +LSGG +R+ LA Q L V
Sbjct: 101 IYDYLRLLFARVGIRERLGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSGLTGV- 159
Query: 180 DLLILDEPLAGLDWKARADVVKLLKHLK-KELTILVVSHDLKEMAALVDHSWRMDMG 235
L +LDEP GL + +++ LK L+ T+LVV HD ++ DH +D+G
Sbjct: 160 -LYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHD-EDTIRAADHV--IDIG 212
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 226 |
| >gnl|CDD|163431 TIGR03719, ABC_ABC_ChvD, ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Score = 54.9 bits (133), Expect = 8e-09
Identities = 52/190 (27%), Positives = 85/190 (44%), Gaps = 32/190 (16%)
Query: 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93
+++ +SF LP + G +G+GK+TL +++ G +P SG+I I GE
Sbjct: 337 LIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKI------GE------- 383
Query: 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTS 153
K+ V Q + V +E+ G IQL + + + + G+
Sbjct: 384 --TVKLAYVDQSRDALDPNKTVWEEISGG----LDIIQLGKR-EVPSRAYVGRFNFKGSD 436
Query: 154 LDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKEL--- 210
K LSGG + R+ LA L ++L+LDEP LD V+ L+ L++ L
Sbjct: 437 QQKKVGQLSGGERNRVHLAKTLKSGGNVLLLDEPTNDLD-------VETLRALEEALLEF 489
Query: 211 --TILVVSHD 218
+V+SHD
Sbjct: 490 AGCAVVISHD 499
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. Length = 552 |
| >gnl|CDD|236861 PRK11147, PRK11147, ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 55.0 bits (133), Expect = 9e-09
Identities = 64/215 (29%), Positives = 87/215 (40%), Gaps = 60/215 (27%)
Query: 50 IFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERY 109
+ GR+G+GK+TL+++L G G I Y D V + Q P R
Sbjct: 34 LVGRNGAGKSTLMKILNGEVLLDDGRII---YEQD------------LIVARLQQDPPRN 78
Query: 110 FVADNVLDEVIFGWPRQSGSIQLKEYLAL-----------NLQRA--------------- 143
V V D V G Q+ LK Y + NL
Sbjct: 79 -VEGTVYDFVAEGIEEQAE--YLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQL 135
Query: 144 ---INWV----GLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKAR 196
IN V GLD D SLSGG+ R+ AL LV PD+L+LDEP LD +
Sbjct: 136 ENRINEVLAQLGLDP---DAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETI 192
Query: 197 ADVVKLLKHLKKELTILVVSHD---LKEMAA-LVD 227
+ LK + +I+ +SHD ++ MA +VD
Sbjct: 193 EWLEGFLKTFQG--SIIFISHDRSFIRNMATRIVD 225
|
Length = 635 |
| >gnl|CDD|182817 PRK10895, PRK10895, lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 53.7 bits (129), Expect = 1e-08
Identities = 26/78 (33%), Positives = 49/78 (62%), Gaps = 1/78 (1%)
Query: 159 HSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKE-LTILVVSH 217
SLSGG +RR+ +A L P ++LDEP AG+D + D+ ++++HL+ L +L+ H
Sbjct: 136 QSLSGGERRRVEIARALAANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDH 195
Query: 218 DLKEMAALVDHSWRMDMG 235
+++E A+ + ++ + G
Sbjct: 196 NVRETLAVCERAYIVSQG 213
|
Length = 241 |
| >gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Score = 54.6 bits (132), Expect = 1e-08
Identities = 34/94 (36%), Positives = 50/94 (53%), Gaps = 10/94 (10%)
Query: 147 VGLDGTSLDKDPHSLSGGYKRRLALAIQ----LVQVPDLLILDEPLAGLDWKARADVVKL 202
VGLD SL + +LSGG +R+ LA Q L V L +LDEP GL + ++
Sbjct: 475 VGLDYLSLSRAAGTLSGGEAQRIRLATQIGSGLTGV--LYVLDEPSIGLHQRDNRRLINT 532
Query: 203 LKHLKKE-LTILVVSHDLKEMAALVDHSWRMDMG 235
LK L+ T++VV HD ++ D + +D+G
Sbjct: 533 LKRLRDLGNTLIVVEHD-EDTIRAAD--YVIDIG 563
|
This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925 |
| >gnl|CDD|213205 cd03238, ABC_UvrA, ATP-binding cassette domain of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 52.7 bits (127), Expect = 1e-08
Identities = 52/207 (25%), Positives = 83/207 (40%), Gaps = 61/207 (29%)
Query: 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94
L + S+P ++ G SGSGK+TL+ GL + P S L
Sbjct: 11 LQNLDVSIPLNVLVVVTGVSGSGKSTLVN--EGLYASGKARLI------SFLPKFSRNKL 62
Query: 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSL 154
+F +D+ LQ I+ VGL +L
Sbjct: 63 -------IF------------IDQ---------------------LQFLID-VGLGYLTL 81
Query: 155 DKDPHSLSGGYKRRLALAIQLVQ--VPDLLILDEPLAGLDWKARADVVKLLKHLKKEL-- 210
+ +LSGG +R+ LA +L L ILDEP GL + D+ +LL+ +K +
Sbjct: 82 GQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPSTGLH---QQDINQLLEVIKGLIDL 138
Query: 211 --TILVVSHDLKEMAALVDHSWRMDMG 235
T++++ H+L + + D W +D G
Sbjct: 139 GNTVILIEHNLD-VLSSAD--WIIDFG 162
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 176 |
| >gnl|CDD|223256 COG0178, UvrA, Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 54.1 bits (131), Expect = 2e-08
Identities = 33/97 (34%), Positives = 52/97 (53%), Gaps = 13/97 (13%)
Query: 140 LQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ----LVQVPDLLILDEPLAGLDWKA 195
L ++ VGL +L + +LSGG +R+ LA Q L V L +LDEP GL +
Sbjct: 462 LGFLVD-VGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGV--LYVLDEPSIGLHQRD 518
Query: 196 RADVVKLLKHLKKEL--TILVVSHDLKEMAA---LVD 227
+++ LK L ++L T++VV HD + A ++D
Sbjct: 519 NERLIETLKRL-RDLGNTVIVVEHDEDTIRAADHIID 554
|
Length = 935 |
| >gnl|CDD|213257 cd03290, ABCC_SUR1_N, ATP-binding cassette domain of the sulfonylurea receptor, subfamily C | Back alignment and domain information |
|---|
Score = 52.7 bits (126), Expect = 2e-08
Identities = 51/205 (24%), Positives = 87/205 (42%), Gaps = 20/205 (9%)
Query: 29 GTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPN 88
G+ + L+ ++ +P +I G+ G GK++LL + G + G ++ N
Sbjct: 11 GSGLATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSF 70
Query: 89 NSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWP----RQSGSIQLKEYLALNLQRAI 144
+ V Q P + + V + + FG P R A +LQ I
Sbjct: 71 EATRSRNRYSVAYAAQKP--WLLNATVEENITFGSPFNKQRYKAVTD-----ACSLQPDI 123
Query: 145 NWVGL-DGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLL 203
+ + D T + + +LSGG ++R+ +A L Q +++ LD+P + LD + L
Sbjct: 124 DLLPFGDQTEIGERGINLSGGQRQRICVARALYQNTNIVFLDDPFSALD-------IHLS 176
Query: 204 KHLKKELTILVVSHDLKEMAALVDH 228
HL +E IL D K LV H
Sbjct: 177 DHLMQE-GILKFLQDDKRTLVLVTH 200
|
The SUR domain 1. The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. Length = 218 |
| >gnl|CDD|182732 PRK10789, PRK10789, putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Score = 53.6 bits (129), Expect = 3e-08
Identities = 60/227 (26%), Positives = 100/227 (44%), Gaps = 42/227 (18%)
Query: 19 EVRDVSYRPPGTQVDILNGVSFSL-PEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
+R +Y P T L V+F+L P + G+ G +GSGK+TLL L+ + G I
Sbjct: 317 NIRQFTY--PQTDHPALENVNFTLKPGQMLGIC-GPTGSGKSTLLSLIQRHFDVSEGDIR 373
Query: 78 IRGYNNDGEPNNSPEPLPP-------EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGS- 129
PL ++ +V Q P + +D V + + G P +
Sbjct: 374 FHDI-----------PLTKLQLDSWRSRLAVVSQTP--FLFSDTVANNIALGRPDATQQE 420
Query: 130 IQLKEYLA------LNL-QRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLL 182
I+ LA L L Q VG G L SGG K+R+++A L+ ++L
Sbjct: 421 IEHVARLASVHDDILRLPQGYDTEVGERGVML-------SGGQKQRISIARALLLNAEIL 473
Query: 183 ILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHS 229
ILD+ L+ +D + ++ L+ + T+++ +H L +AL + S
Sbjct: 474 ILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRL---SALTEAS 517
|
Length = 569 |
| >gnl|CDD|183231 PRK11614, livF, leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.6 bits (126), Expect = 3e-08
Identities = 59/223 (26%), Positives = 96/223 (43%), Gaps = 34/223 (15%)
Query: 31 QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNS 90
++ L+ VS + + + G +G+GKTTLL L G + TSG I G +
Sbjct: 17 KIQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQTAK 76
Query: 91 PEPLPPEKVGIVFQFPE--RYFVADNVLDEVIFGW---PRQSGSIQLKEYLAL------- 138
+ E V IV PE R F V + + G R ++K L
Sbjct: 77 ---IMREAVAIV---PEGRRVFSRMTVEENLAMGGFFAERDQFQERIKWVYELFPRLHER 130
Query: 139 NLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARAD 198
+QRA GT +SGG ++ LA+ L+ P LL+LDEP GL
Sbjct: 131 RIQRA-------GT--------MSGGEQQMLAIGRALMSQPRLLLLDEPSLGLAPIIIQQ 175
Query: 199 VVKLLKHLKKE-LTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240
+ ++ L+++ +TI +V + + L D + ++ G ++E
Sbjct: 176 IFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLE 218
|
Length = 237 |
| >gnl|CDD|213194 cd03227, ABC_Class2, ATP-binding cassette domain of non-transporter proteins | Back alignment and domain information |
|---|
Score = 51.2 bits (123), Expect = 3e-08
Identities = 28/81 (34%), Positives = 41/81 (50%), Gaps = 6/81 (7%)
Query: 159 HSLSGGYKRRLALAIQL----VQVPDLLILDEPLAGLDWK-ARADVVKLLKHLKKELTIL 213
LSGG K ALA+ L ++ L ILDE GLD + +A +L+HL K ++
Sbjct: 76 LQLSGGEKELSALALILALASLKPRPLYILDEIDRGLDPRDGQALAEAILEHLVKGAQVI 135
Query: 214 VVSHDLKEMAALVDHSWRMDM 234
V++H E+A L D +
Sbjct: 136 VITHLP-ELAELADKLIHIKK 155
|
ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterized by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. Length = 162 |
| >gnl|CDD|213189 cd03222, ABC_RNaseL_inhibitor, ATP-binding cassette domain of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 51.4 bits (123), Expect = 4e-08
Identities = 28/83 (33%), Positives = 43/83 (51%), Gaps = 4/83 (4%)
Query: 149 LDGTSLDKDPH--SLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHL 206
DG + P LSGG +R+A+A L++ + DEP A LD + R + + ++ L
Sbjct: 58 WDGITPVYKPQYIDLSGGELQRVAIAAALLRNATFYLFDEPSAYLDIEQRLNAARAIRRL 117
Query: 207 --KKELTILVVSHDLKEMAALVD 227
+ + T LVV HDL + L D
Sbjct: 118 SEEGKKTALVVEHDLAVLDYLSD 140
|
The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 177 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 53.0 bits (127), Expect = 5e-08
Identities = 57/206 (27%), Positives = 90/206 (43%), Gaps = 50/206 (24%)
Query: 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93
+L +SF L + + G +GSGK++LL ++ G +P+ G I + G + SP
Sbjct: 441 VLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKI-----KHSGRISFSP-- 493
Query: 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWP----RQSGSI---QLKEYLALNLQRAINW 146
Q + + + D +IFG R + I QL+E +AL ++
Sbjct: 494 ----------QTS--WIMPGTIKDNIIFGLSYDEYRYTSVIKACQLEEDIALFPEK---- 537
Query: 147 VGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDW------------- 193
D T L + +LSGG + R++LA + + DL +LD P LD
Sbjct: 538 ---DKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTHLDVVTEKEIFESCLCK 594
Query: 194 ----KARADVVKLLKHLKKELTILVV 215
K R V L+HLKK IL++
Sbjct: 595 LMSNKTRILVTSKLEHLKKADKILLL 620
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|213256 cd03289, ABCC_CFTR2, ATP-binding cassette domain 2 of CFTR,subfamily C | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 6e-08
Identities = 62/224 (27%), Positives = 100/224 (44%), Gaps = 45/224 (20%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSL-PEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSI 76
+ V+D++ + +L +SFS+ P + GL+ GR+GSGK+TLL L T G I
Sbjct: 3 MTVKDLTAKYTEGGNAVLENISFSISPGQRVGLL-GRTGSGKSTLLSAFLRLLN-TEGDI 60
Query: 77 NIRGYNNDGEPNNSPEP---LPPEKVGIVFQFPER--------------YFVADNV-LDE 118
I G + + P + P+KV I F R + VA+ V L
Sbjct: 61 QIDGVSWNSVPLQKWRKAFGVIPQKVFI-FSGTFRKNLDPYGKWSDEEIWKVAEEVGLKS 119
Query: 119 VIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQV 178
VI +P Q +++V +DG + LS G+K+ + LA ++
Sbjct: 120 VIEQFPGQ-----------------LDFVLVDGGCV------LSHGHKQLMCLARSVLSK 156
Query: 179 PDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEM 222
+L+LDEP A LD + K LK + T+++ H ++ M
Sbjct: 157 AKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAM 200
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 275 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 52.2 bits (126), Expect = 7e-08
Identities = 66/227 (29%), Positives = 109/227 (48%), Gaps = 30/227 (13%)
Query: 18 LEVRDVS-YRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP--TSG 74
LEVR+++ + P + ++ VSFSL I G G+G+T L+Q L G + P G
Sbjct: 260 LEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFG-AYPGRWEG 318
Query: 75 SINIRGYNNDGEP---NNSPEPLP------PE---KVGIVFQFPERYFVADNVLDEVIFG 122
I I DG+P N + + PE + GIV V N+ +
Sbjct: 319 EIFI-----DGKPVKIRNPQQAIAQGIAMVPEDRKRDGIVPVMG----VGKNITLAAL-- 367
Query: 123 WPRQSGSIQLKEYLALN-LQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDL 181
R +G ++ + L + +I + + S + LSGG +++ LA L+ P +
Sbjct: 368 -DRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQKAVLAKCLLLNPKI 426
Query: 182 LILDEPLAGLDWKARADVVKLLKHLKKE-LTILVVSHDLKEMAALVD 227
LILDEP G+D A+ ++ KL+ L ++ + I+V+S +L E+ L D
Sbjct: 427 LILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSD 473
|
Length = 506 |
| >gnl|CDD|131681 TIGR02633, xylG, D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Score = 52.1 bits (125), Expect = 8e-08
Identities = 50/200 (25%), Positives = 92/200 (46%), Gaps = 8/200 (4%)
Query: 32 VDILNGVSFSL-PEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNS 90
V L+G+ + P + GL G +G+GK+TL+++L+G+ + I G P +
Sbjct: 14 VKALDGIDLEVRPGECVGLC-GENGAGKSTLMKILSGVYPHGTWDGEIYW---SGSPLKA 69
Query: 91 PEPLPPEKVGIVFQFPERYFVAD-NVLDEVIFGWP-RQSGSIQLKEYLALNLQRAINWVG 148
E+ GIV E V + +V + + G G + L + + +
Sbjct: 70 SNIRDTERAGIVIIHQELTLVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQ 129
Query: 149 LDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLK- 207
LD ++ + GG ++ + +A L + LLILDEP + L K ++ +++ LK
Sbjct: 130 LDADNVTRPVGDYGGGQQQLVEIAKALNKQARLLILDEPSSSLTEKETEILLDIIRDLKA 189
Query: 208 KELTILVVSHDLKEMAALVD 227
+ + +SH L E+ A+ D
Sbjct: 190 HGVACVYISHKLNEVKAVCD 209
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 500 |
| >gnl|CDD|226639 COG4170, SapD, ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Score = 51.8 bits (124), Expect = 8e-08
Identities = 56/224 (25%), Positives = 103/224 (45%), Gaps = 14/224 (6%)
Query: 18 LEVRD--VSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGS 75
L++R+ + ++ V ++ VS +L E + G SGSGK+ + + + G++K
Sbjct: 4 LDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRV 63
Query: 76 INIRGYNNDGE----PNNSPEPLPPEKVGIVFQFPERYF-VADNVLDEVIFGWPRQSGSI 130
R +D + L V ++FQ P+ ++ V ++I P +
Sbjct: 64 TADRMRFDDIDLLRLSPRERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKG 123
Query: 131 QLKEYLALNLQRAINWVGLDGTSLDKD-----PHSLSGGYKRRLALAIQLVQVPDLLILD 185
+ + +RAI + G KD P+ L+ G +++ +AI L P LLI D
Sbjct: 124 RWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTEGECQKVMIAIALANQPRLLIAD 183
Query: 186 EPLAGLDWKARADVVKLLKHLKKE--LTILVVSHDLKEMAALVD 227
EP ++ +A + +LL L + TIL++SHDL+ ++ D
Sbjct: 184 EPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWAD 227
|
Length = 330 |
| >gnl|CDD|236729 PRK10636, PRK10636, putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 51.7 bits (124), Expect = 1e-07
Identities = 63/232 (27%), Positives = 97/232 (41%), Gaps = 40/232 (17%)
Query: 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSG 74
+S L++R G +V + N + P + GL+ G++G GK+TLL LL G
Sbjct: 4 FSSLQIRR------GVRVLLDNATATINPGQKVGLV-GKNGCGKSTLLALLKNEISADGG 56
Query: 75 SINIRGYNNDGEPNNSPEPLPPEKVGIVF-------QFPERYFVADNVLD---------- 117
S G N LP + V Q + A+ D
Sbjct: 57 SYTFPGNWQLAWVNQETPALPQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGK 116
Query: 118 -EVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176
+ I W +S + L ++ +G L++ SGG++ RL LA L+
Sbjct: 117 LDAIDAWTIRSRAASL-----------LHGLGFSNEQLERPVSDFSGGWRMRLNLAQALI 165
Query: 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVD 227
DLL+LDEP LD A V+ L K LK + T++++SHD + +VD
Sbjct: 166 CRSDLLLLDEPTNHLDLDA---VIWLEKWLKSYQGTLILISHDRDFLDPIVD 214
|
Length = 638 |
| >gnl|CDD|184132 PRK13547, hmuV, hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 1e-07
Identities = 56/207 (27%), Positives = 96/207 (46%), Gaps = 30/207 (14%)
Query: 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAG-LSKP-TSGSINIRG-YNNDGEPNNS 90
IL +S + + GR+G+GK+TLL+ LAG L+ + G +GEP +
Sbjct: 16 ILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAA 75
Query: 91 PEPLPPEKVGIVF-QFPERYFVADNVLDEVIFG-WP--RQSGSIQLKEYLALNLQRAINW 146
+ ++ V Q + F A + + V+ G +P R++G++ ++ I W
Sbjct: 76 IDAPRLARLRAVLPQAAQPAF-AFSAREIVLLGRYPHARRAGALTHRD-------GEIAW 127
Query: 147 VGL---DGTSLD-KDPHSLSGGYKRRLALAIQLVQV---------PDLLILDEPLAGLDW 193
L T+L +D +LSGG R+ A L Q+ P L+LDEP A LD
Sbjct: 128 QALALAGATALVGRDVTTLSGGELARVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDL 187
Query: 194 KARADVVKLLKHLKKE--LTILVVSHD 218
+ ++ ++ L ++ L +L + HD
Sbjct: 188 AHQHRLLDTVRRLARDWNLGVLAIVHD 214
|
Length = 272 |
| >gnl|CDD|184128 PRK13541, PRK13541, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 49.9 bits (119), Expect = 1e-07
Identities = 43/169 (25%), Positives = 77/169 (45%), Gaps = 24/169 (14%)
Query: 38 VSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP- 96
+S + + I G +G GK++LL+++AG+ +P+SG+I + N NN +P
Sbjct: 19 LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNI----NNIAKPYCTY 74
Query: 97 --EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSL 154
+G+ + V + + F W S + L AI++ L L
Sbjct: 75 IGHNLGLKLEM--------TVFENLKF-WSEIYNSAET-------LYAAIHYFKLHDL-L 117
Query: 155 DKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLL 203
D+ +SLS G ++ +A+A + DL +LDE L + R + L+
Sbjct: 118 DEKCYSLSSGMQKIVAIARLIACQSDLWLLDEVETNLSKENRDLLNNLI 166
|
Length = 195 |
| >gnl|CDD|182852 PRK10938, PRK10938, putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Score = 50.8 bits (122), Expect = 2e-07
Identities = 26/69 (37%), Positives = 38/69 (55%), Gaps = 1/69 (1%)
Query: 161 LSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKE-LTILVVSHDL 219
LS G R+ L L+ PDLLILDEP GLD +R + +LL L + +T+++V +
Sbjct: 136 LSTGETRKTLLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRF 195
Query: 220 KEMAALVDH 228
E+ V
Sbjct: 196 DEIPDFVQF 204
|
Length = 490 |
| >gnl|CDD|184134 PRK13549, PRK13549, xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 50.7 bits (122), Expect = 2e-07
Identities = 60/220 (27%), Positives = 101/220 (45%), Gaps = 24/220 (10%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSL-PEKSFGLIFGRSGSGKTTLLQLLAGL--SKPTSG 74
LE+++++ G V L+ VS + + L G +G+GK+TL+++L+G+ G
Sbjct: 6 LEMKNITKTFGG--VKALDNVSLKVRAGEIVSLC-GENGAGKSTLMKVLSGVYPHGTYEG 62
Query: 75 SINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIF--GWPRQSGSIQL 132
I +GE + E+ GI E V + + E IF G +
Sbjct: 63 EIIF-----EGEELQASNIRDTERAGIAIIHQELALVKELSVLENIFLGNEITPGGIM-- 115
Query: 133 KEYLALNLQRAINWVGLDGTSLDKDPHS----LSGGYKRRLALAIQLVQVPDLLILDEPL 188
+Y A+ L RA L LD +P + L G ++ + +A L + LLILDEP
Sbjct: 116 -DYDAMYL-RAQKL--LAQLKLDINPATPVGNLGLGQQQLVEIAKALNKQARLLILDEPT 171
Query: 189 AGLDWKARADVVKLLKHLKKE-LTILVVSHDLKEMAALVD 227
A L A ++ +++ LK + + +SH L E+ A+ D
Sbjct: 172 ASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISD 211
|
Length = 506 |
| >gnl|CDD|223496 COG0419, SbcC, ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Score = 50.9 bits (122), Expect = 2e-07
Identities = 25/75 (33%), Positives = 41/75 (54%), Gaps = 11/75 (14%)
Query: 160 SLSGGYKRRLALAIQL-----VQ---VPDLLILDEPLAGLDWKARADVVKLLKHLKKE-L 210
+LSGG + +LA++L +Q +LL LDEP LD + + ++L+ L +
Sbjct: 815 TLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGR 874
Query: 211 TILVVSHD--LKEMA 223
I+++SH LKE A
Sbjct: 875 QIIIISHVEELKERA 889
|
Length = 908 |
| >gnl|CDD|215634 PLN03211, PLN03211, ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Score = 51.0 bits (122), Expect = 2e-07
Identities = 58/196 (29%), Positives = 93/196 (47%), Gaps = 29/196 (14%)
Query: 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGL--SKPTSGSINIRGYNNDGEPNNSP 91
ILNGV+ + G SGSGK+TLL LAG +G+I N+ +P
Sbjct: 83 ILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILA----NNRKPTKQI 138
Query: 92 EPLPPEKVGIVFQ----FPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWV 147
++ G V Q +P V + ++ + P+ S + Q K +A + I+ +
Sbjct: 139 L----KRTGFVTQDDILYPH-LTVRETLVFCSLLRLPK-SLTKQEKILVA---ESVISEL 189
Query: 148 GLD-------GTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVV 200
GL G S + +SGG ++R+++A +++ P LLILDEP +GLD A +V
Sbjct: 190 GLTKCENTIIGNSFIR---GISGGERKRVSIAHEMLINPSLLILDEPTSGLDATAAYRLV 246
Query: 201 KLLKHLKKELTILVVS 216
L L ++ +V S
Sbjct: 247 LTLGSLAQKGKTIVTS 262
|
Length = 659 |
| >gnl|CDD|213203 cd03236, ABC_RNaseL_inhibitor_domain1, The ATP-binding cassette domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Score = 49.3 bits (118), Expect = 4e-07
Identities = 51/196 (26%), Positives = 92/196 (46%), Gaps = 37/196 (18%)
Query: 50 IFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFP--- 106
+ G +G GK+T L++LAG KP N+ +++ PP+ I+ +F
Sbjct: 31 LVGPNGIGKSTALKILAGKLKP-----NLGKFDD-----------PPDWDEILDEFRGSE 74
Query: 107 -ERYF--VADNVLDEVIFGWPRQSGSI--QLKEYLALNLQRA---------INWVGLDGT 152
+ YF + + + ++ P+ I +K + L++ ++ + L
Sbjct: 75 LQNYFTKLLEGDVKVIV--KPQYVDLIPKAVKGKVGELLKKKDERGKLDELVDQLELRHV 132
Query: 153 SLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKEL-T 211
LD++ LSGG +R+A+A L + D DEP + LD K R + +L++ L ++
Sbjct: 133 -LDRNIDQLSGGELQRVAIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNY 191
Query: 212 ILVVSHDLKEMAALVD 227
+LVV HDL + L D
Sbjct: 192 VLVVEHDLAVLDYLSD 207
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. Length = 255 |
| >gnl|CDD|188098 TIGR00957, MRP_assoc_pro, multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Score = 50.3 bits (120), Expect = 4e-07
Identities = 43/160 (26%), Positives = 76/160 (47%), Gaps = 23/160 (14%)
Query: 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94
LNG++FS+PE + + G+ G GK++LL L G ++++G
Sbjct: 654 LNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKGS------------- 700
Query: 95 PPEKVGIVFQFPERYFVADNVLDE-VIFGWPRQSGSIQ-LKEYLALNLQRAINWVGLDGT 152
V P++ ++ ++ L E ++FG Q + E AL I G D T
Sbjct: 701 -------VAYVPQQAWIQNDSLRENILFGKALNEKYYQQVLEACALLPDLEILPSG-DRT 752
Query: 153 SLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLD 192
+ + +LSGG K+R++LA + D+ + D+PL+ +D
Sbjct: 753 EIGEKGVNLSGGQKQRVSLARAVYSNADIYLFDDPLSAVD 792
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved [Transport and binding proteins, Other]. Length = 1522 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (116), Expect = 6e-07
Identities = 19/44 (43%), Positives = 31/44 (70%)
Query: 37 GVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRG 80
G+SF+L I G +G+GKT+LL++LAGL++P +G + +G
Sbjct: 19 GLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQG 62
|
Length = 204 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (118), Expect = 8e-07
Identities = 58/226 (25%), Positives = 100/226 (44%), Gaps = 38/226 (16%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
L + PG V L+ +SF + G +G+GK+TLL++L+G +P +GSI
Sbjct: 5 LSFDGIGKTFPG--VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSIL 62
Query: 78 IRG----YNNDGEPNNSPEPLPPEKVGIVFQ----FPERYFVADNVLDEVIFG-WPRQSG 128
I G + + + V I++Q PE VA+N+ G P + G
Sbjct: 63 IDGQEMRFASTTAALAA-------GVAIIYQELHLVPE-MTVAENLY----LGQLPHKGG 110
Query: 129 SIQLKEYLALNLQRAINWVG--LDGTSLDKDPH----SLSGGYKRRLALAIQLVQVPDLL 182
+ N + L+ +D DP LS G ++ + +A L + ++
Sbjct: 111 IV--------NRRLLNYEAREQLEHLGVDIDPDTPLKYLSIGQRQMVEIAKALARNARVI 162
Query: 183 ILDEPLAGLDWKARADVVKLLKHLKKELT-ILVVSHDLKEMAALVD 227
DEP + L + + ++++ L+ E IL VSH ++E+ AL D
Sbjct: 163 AFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCD 208
|
Length = 501 |
| >gnl|CDD|184130 PRK13545, tagH, teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Score = 49.1 bits (117), Expect = 8e-07
Identities = 21/46 (45%), Positives = 32/46 (69%)
Query: 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRG 80
LN +SF +PE I G +GSGK+TL L+AG++ P G+++I+G
Sbjct: 40 LNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKG 85
|
Length = 549 |
| >gnl|CDD|213188 cd03221, ABCF_EF-3, ATP-binding cassette domain of elongation factor 3, subfamily F | Back alignment and domain information |
|---|
Score = 46.3 bits (111), Expect = 1e-06
Identities = 20/60 (33%), Positives = 36/60 (60%), Gaps = 4/60 (6%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKS-FGLIFGRSGSGKTTLLQLLAGLSKPTSGSI 76
+E+ ++S G +L +S ++ GL+ GR+G+GK+TLL+L+AG +P G +
Sbjct: 1 IELENLSKTYGGKL--LLKDISLTINPGDRIGLV-GRNGAGKSTLLKLIAGELEPDEGIV 57
|
Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. Length = 144 |
| >gnl|CDD|227590 COG5265, ATM1, ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Score = 48.5 bits (116), Expect = 1e-06
Identities = 59/233 (25%), Positives = 91/233 (39%), Gaps = 60/233 (25%)
Query: 15 YSCLEVR--DVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPT 72
V +VS+ + ILNG+SF++P I G SG+GK+T+L+LL
Sbjct: 258 VRLGAVAFINVSFAYDPRRP-ILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVN 316
Query: 73 SGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQL 132
SGSI I G + S +GIV Q D V+F
Sbjct: 317 SGSITIDGQDIRDVTQQSLR----RAIGIVPQ------------DTVLF----------- 349
Query: 133 KEYLALNLQRAINWVGLDGTSLDKDP-----------HSLSGGYK--------------- 166
+ +A N++ D T+ + SL GY
Sbjct: 350 NDTIAYNIKYG----RPDATAEEVGAAAEAAQIHDFIQSLPEGYDTGVGERGLKLSGGEK 405
Query: 167 RRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDL 219
+R+A+A +++ P +LILDE + LD + L+ + T LV++H L
Sbjct: 406 QRVAIARTILKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRL 458
|
Length = 497 |
| >gnl|CDD|233208 TIGR00956, 3a01205, Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Score = 48.6 bits (116), Expect = 2e-06
Identities = 59/204 (28%), Positives = 94/204 (46%), Gaps = 36/204 (17%)
Query: 21 RDVSYRPP--GTQVDILNGVS-FSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSI- 76
R+++Y + ILN V + P L+ G SG+GKTTLL +LA + T+G I
Sbjct: 763 RNLTYEVKIKKEKRVILNNVDGWVKPGTLTALM-GASGAGKTTLLNVLAE--RVTTGVIT 819
Query: 77 -NIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIF-GWPRQSGSIQLKE 134
R N G P +S +G V Q + + V + + F + RQ S+ E
Sbjct: 820 GGDRLVN--GRPLDSSFQ---RSIGYVQQ-QDLHLPTSTVRESLRFSAYLRQPKSVSKSE 873
Query: 135 ----------YLAL-NLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLI 183
L + + A+ VG+ G L+ + ++RL + ++LV P LL+
Sbjct: 874 KMEYVEEVIKLLEMESYADAV--VGVPGEGLNVEQ-------RKRLTIGVELVAKPKLLL 924
Query: 184 -LDEPLAGLDWKARADVVKLLKHL 206
LDEP +GLD + + KL++ L
Sbjct: 925 FLDEPTSGLDSQTAWSICKLMRKL 948
|
[Transport and binding proteins, Other]. Length = 1394 |
| >gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Score = 48.3 bits (115), Expect = 2e-06
Identities = 51/196 (26%), Positives = 91/196 (46%), Gaps = 38/196 (19%)
Query: 28 PGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN---------- 77
++ +L V+ + + G SG+GKTTL+ +LAG + T G I
Sbjct: 889 TEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAG--RKTGGYIEGDIRISGFPK 946
Query: 78 -------IRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSI 130
I GY E N+ P + +++ R + ++++F
Sbjct: 947 KQETFARISGY---CEQNDIHSPQVTVRESLIYSAFLRLPKEVSKEEKMMF-------VD 996
Query: 131 QLKEYLAL-NLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLA 189
++ E + L NL+ AI VGL G + LS ++RL +A++LV P ++ +DEP +
Sbjct: 997 EVMELVELDNLKDAI--VGLPGVT------GLSTEQRKRLTIAVELVANPSIIFMDEPTS 1048
Query: 190 GLDWKARADVVKLLKH 205
GLD +A A V++ +++
Sbjct: 1049 GLDARAAAIVMRTVRN 1064
|
Length = 1470 |
| >gnl|CDD|213199 cd03232, ABCG_PDR_domain2, Second domain of the pleiotropic drug resistance-like (PDR) subfamily G of ATP-binding cassette transporters | Back alignment and domain information |
|---|
Score = 46.5 bits (111), Expect = 2e-06
Identities = 27/84 (32%), Positives = 40/84 (47%), Gaps = 8/84 (9%)
Query: 161 LSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKE-LTILVVSH-- 217
LS ++RL + ++L P +L LDEP +GLD +A ++V+ LK L IL H
Sbjct: 109 LSVEQRKRLTIGVELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQP 168
Query: 218 --DLKEMAALVDHSWRMDMGGFLV 239
+ E D + GG V
Sbjct: 169 SASIFEK---FDRLLLLKRGGKTV 189
|
The pleiotropic drug resistance (PDR) is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 192 |
| >gnl|CDD|182182 PRK09984, PRK09984, phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Score = 47.3 bits (112), Expect = 2e-06
Identities = 52/200 (26%), Positives = 91/200 (45%), Gaps = 21/200 (10%)
Query: 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGL---SKPTSGSINIRGYNNDGEPNNSP 91
L+ V ++ + G SGSGK+TLL+ L+GL K I + G E +
Sbjct: 20 LHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLAR 79
Query: 92 EPLPPE-KVGIVFQ---FPERYFVADNVLDEVIFGWP------RQSGSIQLKEYLALNLQ 141
+ G +FQ R V +NVL + P Q + L
Sbjct: 80 DIRKSRANTGYIFQQFNLVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRAL----- 134
Query: 142 RAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVK 201
+A+ VG+ + + +LSGG ++R+A+A L+Q +++ DEP+A LD ++ V+
Sbjct: 135 QALTRVGMVHFAHQR-VSTLSGGQQQRVAIARALMQQAKVILADEPIASLDPESARIVMD 193
Query: 202 LLKHLKKE--LTILVVSHDL 219
L+ + + +T++V H +
Sbjct: 194 TLRDINQNDGITVVVTLHQV 213
|
Length = 262 |
| >gnl|CDD|184129 PRK13543, PRK13543, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 2e-06
Identities = 54/171 (31%), Positives = 77/171 (45%), Gaps = 18/171 (10%)
Query: 49 LIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPER 108
L+ G +G+GKTTLL++LAGL SG I I DG+ + + + P
Sbjct: 41 LVQGDNGAGKTTLLRVLAGLLHVESGQIQI-----DGKTATRGD--RSRFMAYLGHLPG- 92
Query: 109 YFVAD-NVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKR 167
AD + L+ + F + AL + VGL G D LS G K+
Sbjct: 93 -LKADLSTLENLHFLCGLHGRRAKQMPGSALAI------VGLAGYE-DTLVRQLSAGQKK 144
Query: 168 RLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLK-HLKKELTILVVSH 217
RLALA + L +LDEP A LD + V +++ HL+ LV +H
Sbjct: 145 RLALARLWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTH 195
|
Length = 214 |
| >gnl|CDD|233335 TIGR01271, CFTR_protein, cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Score = 47.6 bits (113), Expect = 3e-06
Identities = 57/202 (28%), Positives = 92/202 (45%), Gaps = 33/202 (16%)
Query: 34 ILNGVSFSL-PEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPE 92
+L +SFS+ + GL+ GR+GSGK+TLL L L T G I I DG NS
Sbjct: 1234 VLQDLSFSVEGGQRVGLL-GRTGSGKSTLLSALLRLLS-TEGEIQI-----DGVSWNSVT 1286
Query: 93 PLPPEKV-GIVFQFPERYFVADNVL-----------DEVIFGWPRQSGSIQLKEYLALNL 140
K G++ P++ F+ DE I W + + + LK +
Sbjct: 1287 LQTWRKAFGVI---PQKVFIFSGTFRKNLDPYEQWSDEEI--W-KVAEEVGLKSVIE-QF 1339
Query: 141 QRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVV 200
+++V +DG + LS G+K+ + LA ++ +L+LDEP A LD +
Sbjct: 1340 PDKLDFVLVDGGYV------LSNGHKQLMCLARSILSKAKILLLDEPSAHLDPVTLQIIR 1393
Query: 201 KLLKHLKKELTILVVSHDLKEM 222
K LK T+++ H ++ +
Sbjct: 1394 KTLKQSFSNCTVILSEHRVEAL 1415
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se [Transport and binding proteins, Anions]. Length = 1490 |
| >gnl|CDD|213258 cd03291, ABCC_CFTR1, ATP-binding cassette domain of the cystic fibrosis transmembrane regulator, subfamily C | Back alignment and domain information |
|---|
Score = 46.8 bits (111), Expect = 3e-06
Identities = 52/206 (25%), Positives = 84/206 (40%), Gaps = 50/206 (24%)
Query: 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93
+L ++ + + I G +GSGKT+LL L+ G +P+ G I G
Sbjct: 52 VLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG------------- 98
Query: 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYL------ALNLQRAIN-W 146
++ QF + + + + +IFG + EY A L+ I +
Sbjct: 99 ----RISFSSQFS--WIMPGTIKENIIFG-------VSYDEYRYKSVVKACQLEEDITKF 145
Query: 147 VGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDW------------- 193
D T L + +LSGG + R++LA + + DL +LD P LD
Sbjct: 146 PEKDNTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCK 205
Query: 194 ----KARADVVKLLKHLKKELTILVV 215
K R V ++HLKK IL++
Sbjct: 206 LMANKTRILVTSKMEHLKKADKILIL 231
|
The CFTR subfamily domain 1. The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. Length = 282 |
| >gnl|CDD|225265 COG2401, COG2401, ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Score = 47.5 bits (113), Expect = 3e-06
Identities = 47/182 (25%), Positives = 79/182 (43%), Gaps = 43/182 (23%)
Query: 50 IFGRSGSGKTTLLQLLAG--------LSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGI 101
+ G+SG+GKTTLL+++ G +P SG + + P N+ L P +
Sbjct: 414 VVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEV--------PKNTVSALIPGEY-- 463
Query: 102 VFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHS- 160
E F +L+ + S A+ + +N GL L + S
Sbjct: 464 -----EPEFGEVTILEHL--------RSKTGDLNAAVEI---LNRAGLSDAVLYRRKFSE 507
Query: 161 LSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHL-----KKELTILVV 215
LS G K R LA L + P++L++DE A LD V++ + + + +T++VV
Sbjct: 508 LSTGQKERAKLAKLLAERPNVLLIDEFAAHLD---ELTAVRVARKISELAREAGITLIVV 564
Query: 216 SH 217
+H
Sbjct: 565 TH 566
|
Length = 593 |
| >gnl|CDD|213207 cd03240, ABC_Rad50, ATP-binding cassette domain of Rad50 | Back alignment and domain information |
|---|
Score = 46.1 bits (110), Expect = 3e-06
Identities = 51/213 (23%), Positives = 77/213 (36%), Gaps = 74/213 (34%)
Query: 49 LIFGRSGSGKTTLLQ-LLAGL-------------------SKPTSGSINIRGYNNDGEPN 88
LI G++G+GKTT+++ L L + + N +G+
Sbjct: 26 LIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIREGEVRAQVKLAFENANGK-- 83
Query: 89 NSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVG 148
K I R +L+ VIF Q S NW
Sbjct: 84 ---------KYTIT-----RSL---AILENVIF--CHQGES---------------NWPL 109
Query: 149 LDGTSLDKDPHSLSGGYKR------RLALAIQLVQVPDLLILDEPLAGLD----WKARAD 198
LD SGG K RLALA +L LDEP LD ++ A+
Sbjct: 110 LDM------RGRCSGGEKVLASLIIRLALAETFGSNCGILALDEPTTNLDEENIEESLAE 163
Query: 199 VVKLLKHLKKELTILVVSHDLKEMAALVDHSWR 231
+++ K K ++V++HD +E+ DH +R
Sbjct: 164 IIEERKSQKNFQ-LIVITHD-EELVDAADHIYR 194
|
The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains. The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. Length = 204 |
| >gnl|CDD|214640 smart00382, AAA, ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Score = 45.4 bits (107), Expect = 3e-06
Identities = 42/180 (23%), Positives = 61/180 (33%), Gaps = 64/180 (35%)
Query: 49 LIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPER 108
LI G GSGKTTL + LA L P G++
Sbjct: 6 LIVGPPGSGKTTLARALARE-------------------------LGPPGGGVI------ 34
Query: 109 YFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRR 168
Y+ L + S SG + R
Sbjct: 35 --------------------------YIDGEDILEEVLDQLLLIIVGGKKASGSGELRLR 68
Query: 169 LALAIQLVQVPDLLILDEPLAGLDWKARADV-------VKLLKHLKKELTILVVSHDLKE 221
LALA+ PD+LILDE + LD + A + + LL +K LT+++ ++D K+
Sbjct: 69 LALALARKLKPDVLILDEITSLLDAEQEALLLLLEELRLLLLLKSEKNLTVILTTNDEKD 128
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. Length = 148 |
| >gnl|CDD|183077 PRK11288, araG, L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (111), Expect = 5e-06
Identities = 48/204 (23%), Positives = 91/204 (44%), Gaps = 47/204 (23%)
Query: 47 FGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFP 106
FGL+ G+G++ L++LL G ++ T+G + + DG+P + P + GI+
Sbjct: 285 FGLV----GAGRSELMKLLYGATRRTAGQVYL-----DGKPIDIRSPRDAIRAGIMLCPE 335
Query: 107 ERYF--------VADN--------------VLDEVIFGWPRQSGSIQLKEYLALNLQRAI 144
+R VADN +++ W + N R I
Sbjct: 336 DRKAEGIIPVHSVADNINISARRHHLRAGCLINN---RWEAE------------NADRFI 380
Query: 145 NWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLK 204
+ + S ++ +LSGG +++ L L + +++LDEP G+D A+ ++ ++
Sbjct: 381 RSLNIKTPSREQLIMNLSGGNQQKAILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIY 440
Query: 205 HLKKE-LTILVVSHDLKEMAALVD 227
L + + +L VS DL E+ + D
Sbjct: 441 ELAAQGVAVLFVSSDLPEVLGVAD 464
|
Length = 501 |
| >gnl|CDD|214372 CHL00131, ycf16, sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Score = 45.4 bits (108), Expect = 7e-06
Identities = 60/215 (27%), Positives = 101/215 (46%), Gaps = 28/215 (13%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLS--KPTSGS 75
LE++++ + IL G++ S+ + I G +GSGK+TL +++AG K G
Sbjct: 8 LEIKNLHASVNENE--ILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGD 65
Query: 76 INIRGYN-NDGEPNNSPEPLPPEKVGI--VFQFP-ERYFVADNVLDEVIFGWPRQSGSIQ 131
I +G + D EP +GI FQ+P E V++ + + R+
Sbjct: 66 ILFKGESILDLEPEER------AHLGIFLAFQYPIEIPGVSNADFLRLAYNSKRK--FQG 117
Query: 132 LKEYLALNLQRAIN----WVGLDGTSLDKDPHS-LSGGYKRR---LALAIQLVQVPDLLI 183
L E L IN VG+D + L ++ + SGG K+R L +A+ +L I
Sbjct: 118 LPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGEKKRNEILQMAL---LDSELAI 174
Query: 184 LDEPLAGLDWKARADVVKLLKHLK-KELTILVVSH 217
LDE +GLD A + + + L E +I++++H
Sbjct: 175 LDETDSGLDIDALKIIAEGINKLMTSENSIILITH 209
|
Length = 252 |
| >gnl|CDD|236992 PRK11819, PRK11819, putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Score = 45.9 bits (110), Expect = 8e-06
Identities = 57/200 (28%), Positives = 85/200 (42%), Gaps = 56/200 (28%)
Query: 36 NGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEP------NN 89
+ +SFSLP I G +G+GK+TL +++ G +P SG+I I GE +
Sbjct: 341 DDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKI------GETVKLAYVDQ 394
Query: 90 SPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAIN---- 145
S + L P K V +E+ SG + + + + R I
Sbjct: 395 SRDALDPNK---------------TVWEEI-------SGGL---DIIKVG-NREIPSRAY 428
Query: 146 --WVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLL 203
G K LSGG + RL LA L Q ++L+LDEP LD V+ L
Sbjct: 429 VGRFNFKGGDQQKKVGVLSGGERNRLHLAKTLKQGGNVLLLDEPTNDLD-------VETL 481
Query: 204 KHLKKEL-----TILVVSHD 218
+ L++ L +V+SHD
Sbjct: 482 RALEEALLEFPGCAVVISHD 501
|
Length = 556 |
| >gnl|CDD|235175 PRK03918, PRK03918, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Score = 45.8 bits (109), Expect = 9e-06
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 9/72 (12%)
Query: 161 LSGGYK------RRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLL-KHLKKELTIL 213
LSGG + RLAL++ L LLILDEP LD + R +V ++ ++L+K ++
Sbjct: 789 LSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVI 848
Query: 214 VVSHD--LKEMA 223
+VSHD LK+ A
Sbjct: 849 IVSHDEELKDAA 860
|
Length = 880 |
| >gnl|CDD|234734 PRK00349, uvrA, excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Score = 45.4 bits (109), Expect = 1e-05
Identities = 32/80 (40%), Positives = 45/80 (56%), Gaps = 13/80 (16%)
Query: 147 VGLDGTSLDKDPHSLSGGYKRRLALAIQ----LVQVPDLLILDEPLAGLDWKARADVVKL 202
VGLD +L + +LSGG +R+ LA Q L V L +LDEP GL + D +L
Sbjct: 476 VGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGV--LYVLDEPSIGLHQR---DNDRL 530
Query: 203 LKHLKK--EL--TILVVSHD 218
++ LK +L T++VV HD
Sbjct: 531 IETLKHLRDLGNTLIVVEHD 550
|
Length = 943 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 45.2 bits (107), Expect = 2e-05
Identities = 29/63 (46%), Positives = 37/63 (58%), Gaps = 4/63 (6%)
Query: 156 KDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILV 214
K + SGG++ R+ALA L PDLL+LDEP LD A V+ L +L K T +V
Sbjct: 340 KATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHA---VLWLETYLLKWPKTFIV 396
Query: 215 VSH 217
VSH
Sbjct: 397 VSH 399
|
Length = 718 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 45.1 bits (107), Expect = 2e-05
Identities = 61/227 (26%), Positives = 103/227 (45%), Gaps = 56/227 (24%)
Query: 18 LEVRDVS--YRPPGTQVDILNGVSFSL-PEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSG 74
++ DV YRP V L+G+SF + P + G I GR+G+GK+++L L + + G
Sbjct: 1238 IKFEDVVLRYRPELPPV--LHGLSFEISPSEKVG-IVGRTGAGKSSMLNALFRIVELERG 1294
Query: 75 SINIRGYN------NDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSG 128
I I G + D +GI+ Q P V+F SG
Sbjct: 1295 RILIDGCDISKFGLMDLRKV----------LGIIPQAP------------VLF-----SG 1327
Query: 129 SIQLK-----EY----LALNLQRA-------INWVGLDGTSLDKDPHSLSGGYKRRLALA 172
+++ E+ L +L+RA N +GLD + + S G ++ L+LA
Sbjct: 1328 TVRFNLDPFNEHNDADLWESLERAHLKDVIRRNSLGLDAEVSEAG-ENFSVGQRQLLSLA 1386
Query: 173 IQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDL 219
L++ +L+LDE A +D + A + K ++ K T+L+++H L
Sbjct: 1387 RALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRL 1433
|
Length = 1622 |
| >gnl|CDD|213208 cd03241, ABC_RecN, ATP-binding cassette domain of RecN | Back alignment and domain information |
|---|
Score = 44.1 bits (105), Expect = 2e-05
Identities = 23/73 (31%), Positives = 38/73 (52%), Gaps = 5/73 (6%)
Query: 160 SLSGGYKRRLALAIQLV--QVPDL--LILDEPLAGLDWKARADVVKLLKHLKKELTILVV 215
SGG RL LA++ + + + LI DE G+ + V K LK L + +L +
Sbjct: 170 IASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCI 229
Query: 216 SHDLKEMAALVDH 228
+H L ++AA+ D+
Sbjct: 230 TH-LPQVAAMADN 241
|
RecN ATPase involved in DNA repair; similar to ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. Length = 276 |
| >gnl|CDD|215558 PLN03073, PLN03073, ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 3e-05
Identities = 59/218 (27%), Positives = 100/218 (45%), Gaps = 44/218 (20%)
Query: 22 DVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSG----SIN 77
D S+ PG + + ++F + S + G +G GK+T+L+L++G +P+SG S
Sbjct: 513 DASFGYPGGPL-LFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSAK 571
Query: 78 IR-----GYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQL 132
+R ++ DG + S PL + ++ FP G P Q +L
Sbjct: 572 VRMAVFSQHHVDGL-DLSSNPL----LYMMRCFP---------------GVPEQ----KL 607
Query: 133 KEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLD 192
+ +L G+ G + ++LSGG K R+A A + P +L+LDEP LD
Sbjct: 608 RAHLGS--------FGVTGNLALQPMYTLSGGQKSRVAFAKITFKKPHILLLDEPSNHLD 659
Query: 193 WKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSW 230
A +++ L + +L+VSHD ++ VD W
Sbjct: 660 LDAVEALIQGLVLFQG--GVLMVSHDEHLISGSVDELW 695
|
Length = 718 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 43.9 bits (104), Expect = 3e-05
Identities = 25/77 (32%), Positives = 48/77 (62%), Gaps = 1/77 (1%)
Query: 160 SLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHL-KKELTILVVSHD 218
SLSGG ++++ + L+ P++L+LDEP G+D A+ ++ +L+ L KK+ I+++S +
Sbjct: 391 SLSGGNQQKVIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSE 450
Query: 219 LKEMAALVDHSWRMDMG 235
+ E+ + D M G
Sbjct: 451 MPELLGITDRILVMSNG 467
|
Length = 491 |
| >gnl|CDD|222036 pfam13304, AAA_21, AAA domain | Back alignment and domain information |
|---|
Score = 43.6 bits (102), Expect = 4e-05
Identities = 23/70 (32%), Positives = 35/70 (50%), Gaps = 4/70 (5%)
Query: 154 LDKDPHSLSGGYKRRLALAIQLVQV---PDLLILDEPLAGLDWKARADVVKLLKHLKKE- 209
L +S G KR LAL + L+ LL++DEP GL K +V+LLK L ++
Sbjct: 183 LKLLIKGISDGTKRLLALLLALLSALPKGSLLLIDEPENGLHPKLLRKLVELLKELSEKG 242
Query: 210 LTILVVSHDL 219
++ +H
Sbjct: 243 AQLIFTTHSP 252
|
Length = 256 |
| >gnl|CDD|234806 PRK00635, PRK00635, excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Score = 44.0 bits (104), Expect = 4e-05
Identities = 34/104 (32%), Positives = 56/104 (53%), Gaps = 14/104 (13%)
Query: 147 VGLDGTSLDKDPHSLSGGYKRRLALAIQL---VQVPDLLILDEPLAGL---DWKARADVV 200
+GLD L + SLSGG +RL LA +L + P L +LDEP GL D KA V+
Sbjct: 796 LGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKKPTLYVLDEPTTGLHTHDIKALIYVL 855
Query: 201 KLLKHLKKELTILVVSHDLKEMAALVDHSWRM-----DMGGFLV 239
+ L H T++++ H++ + + D+ + ++GG+L+
Sbjct: 856 QSLTHQGH--TVVIIEHNM-HVVKVADYVLELGPEGGNLGGYLL 896
|
Length = 1809 |
| >gnl|CDD|184125 PRK13538, PRK13538, cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Score = 42.5 bits (101), Expect = 6e-05
Identities = 25/72 (34%), Positives = 38/72 (52%), Gaps = 2/72 (2%)
Query: 147 VGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLL-KH 205
VGL G D LS G +RR+ALA + L ILDEP +D + A + LL +H
Sbjct: 117 VGLAGF-EDVPVRQLSAGQQRRVALARLWLTRAPLWILDEPFTAIDKQGVARLEALLAQH 175
Query: 206 LKKELTILVVSH 217
++ +++ +H
Sbjct: 176 AEQGGMVILTTH 187
|
Length = 204 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 43.8 bits (103), Expect = 6e-05
Identities = 42/160 (26%), Positives = 72/160 (45%), Gaps = 22/160 (13%)
Query: 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAG-LSKPTSGSINIRGYNNDGEPNNSPEP 93
L+ ++ +P S I G +G GKT+L+ + G LS + S+ IRG
Sbjct: 633 LSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVVIRG------------- 679
Query: 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAIN-WVGLDGT 152
V V Q + V + ++FG +S + LQ ++ G D T
Sbjct: 680 ----SVAYVPQVS--WIFNATVRENILFGSDFES-ERYWRAIDVTALQHDLDLLPGRDLT 732
Query: 153 SLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLD 192
+ + ++SGG K+R+++A + D+ I D+PL+ LD
Sbjct: 733 EIGERGVNISGGQKQRVSMARAVYSNSDIYIFDDPLSALD 772
|
Length = 1495 |
| >gnl|CDD|181965 PRK09580, sufC, cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Score = 42.5 bits (100), Expect = 7e-05
Identities = 58/207 (28%), Positives = 88/207 (42%), Gaps = 42/207 (20%)
Query: 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLS--KPTSGSINIRGYNNDGEPNNSP 91
IL G++ + I G +GSGK+TL LAG + T G++ +G + SP
Sbjct: 16 ILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLEL---SP 72
Query: 92 EPLPPEKVGIVFQFP-------ERYFVADNV-----------LDEVIFGWPRQSGSIQLK 133
E E + + FQ+P ++F+ + LD F I L
Sbjct: 73 EDRAGEGIFMAFQYPVEIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQ-DLMEEKIALL 131
Query: 134 EYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLD- 192
+ L R++N VG SGG K+R + V P+L ILDE +GLD
Sbjct: 132 KMPEDLLTRSVN-VG------------FSGGEKKRNDILQMAVLEPELCILDESDSGLDI 178
Query: 193 --WKARADVVKLLKHLKKELTILVVSH 217
K AD V L+ K+ + ++V+H
Sbjct: 179 DALKIVADGVNSLRDGKR--SFIIVTH 203
|
Length = 248 |
| >gnl|CDD|215595 PLN03130, PLN03130, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 43.2 bits (102), Expect = 8e-05
Identities = 46/174 (26%), Positives = 69/174 (39%), Gaps = 50/174 (28%)
Query: 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTS-GSINIRGYNNDGEPNNSPEP 93
L+ ++ +P S I G +G GKT+L+ + G P S S+ IRG
Sbjct: 633 LSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVIRG------------- 679
Query: 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTS 153
V V Q + V D ++FG P + +RAI D T+
Sbjct: 680 ----TVAYVPQV--SWIFNATVRDNILFGSP----------FDPERYERAI-----DVTA 718
Query: 154 LDKDPHSL---------------SGGYKRRLALAIQLVQVPDLLILDEPLAGLD 192
L D L SGG K+R+++A + D+ I D+PL+ LD
Sbjct: 719 LQHDLDLLPGGDLTEIGERGVNISGGQKQRVSMARAVYSNSDVYIFDDPLSALD 772
|
Length = 1622 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 2e-04
Identities = 24/62 (38%), Positives = 40/62 (64%), Gaps = 4/62 (6%)
Query: 161 LSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLK---KELTILVVSH 217
LSGG K+R+++A +++ P +LILDE + LD K+ V K + +LK +TI +++H
Sbjct: 580 LSGGQKQRISIARAIIRNPKILILDEATSSLDNKSEYLVQKTINNLKGNENRITI-IIAH 638
Query: 218 DL 219
L
Sbjct: 639 RL 640
|
Length = 1466 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 41.6 bits (97), Expect = 3e-04
Identities = 22/60 (36%), Positives = 38/60 (63%), Gaps = 2/60 (3%)
Query: 160 SLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKEL--TILVVSH 217
SLSGG K+R+A+A L++ P +L+LDE + LD + + K + +K + TI+ ++H
Sbjct: 1358 SLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKLIEKTIVDIKDKADKTIITIAH 1417
|
Length = 1466 |
| >gnl|CDD|179385 PRK02224, PRK02224, chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Score = 41.2 bits (97), Expect = 3e-04
Identities = 31/97 (31%), Positives = 40/97 (41%), Gaps = 25/97 (25%)
Query: 150 DGTSLDKDPHSLSGGYK------------RRLALAIQLVQVPDLLILDEPLAGLDWKARA 197
DG L+ P LSGG + R LA I+ LILDEP LD
Sbjct: 773 DGEPLE--PEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLD---SG 827
Query: 198 DVVKLLKHLKKELT------ILVVSHDLKEMAALVDH 228
V +L+ L + + I+VVSHD E+ D
Sbjct: 828 HVSQLVD-LVESMRRLGVEQIVVVSHD-DELVGAADD 862
|
Length = 880 |
| >gnl|CDD|182880 PRK10982, PRK10982, galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 40.5 bits (95), Expect = 5e-04
Identities = 59/215 (27%), Positives = 102/215 (47%), Gaps = 22/215 (10%)
Query: 21 RDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRG 80
++S PG V L+ V+ + S + G +G+GK+TLL+ L G+ + SGSI +G
Sbjct: 2 SNISKSFPG--VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQG 59
Query: 81 YNNDGEPNNSPEPLPPEKVGIVFQFPERYFVAD-NVLDEVIFG-WPRQSGSI-QLKEYLA 137
D + +S E L + +V Q E V +V+D + G +P + + Q K Y
Sbjct: 60 KEIDFK--SSKEAL-ENGISMVHQ--ELNLVLQRSVMDNMWLGRYPTKGMFVDQDKMY-- 112
Query: 138 LNLQRAINWVGLDGTSLDKDPH----SLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDW 193
+AI D +D DP +LS + + +A ++I+DEP + L
Sbjct: 113 -RDTKAI----FDELDIDIDPRAKVATLSVSQMQMIEIAKAFSYNAKIVIMDEPTSSLTE 167
Query: 194 KARADVVKLLKHLKKE-LTILVVSHDLKEMAALVD 227
K + +++ LK+ I+ +SH ++E+ L D
Sbjct: 168 KEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCD 202
|
Length = 491 |
| >gnl|CDD|237894 PRK15064, PRK15064, ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Score = 39.9 bits (94), Expect = 7e-04
Identities = 47/177 (26%), Positives = 73/177 (41%), Gaps = 40/177 (22%)
Query: 50 IFGRSGSGKTTLLQLLAGLSKPTSGSI----NIRGYNNDGEPNNSPEPLPPEKVGIVFQF 105
I G +G GKTTLL+ L G +P SG++ N +G Q
Sbjct: 350 IIGENGVGKTTLLRTLVGELEPDSGTVKWSENA-------------------NIGYYAQD 390
Query: 106 PERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVG---LDGTSLDKDPHSLS 162
F D L + + W ++ Q R +G + K LS
Sbjct: 391 HAYDFENDLTLFDWMSQWRQEGDDEQ--------AVRGT--LGRLLFSQDDIKKSVKVLS 440
Query: 163 GGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHD 218
GG K R+ ++Q P++L++DEP +D ++ + L L+K E T++ VSHD
Sbjct: 441 GGEKGRMLFGKLMMQKPNVLVMDEPTNHMDMES---IESLNMALEKYEGTLIFVSHD 494
|
Length = 530 |
| >gnl|CDD|222036 pfam13304, AAA_21, AAA domain | Back alignment and domain information |
|---|
Score = 39.0 bits (90), Expect = 0.001
Identities = 19/67 (28%), Positives = 30/67 (44%), Gaps = 1/67 (1%)
Query: 49 LIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPER 108
+I G +GSGK+ LL+ LA L S + + N P L ++ I +F
Sbjct: 3 VIIGPNGSGKSNLLKALALLLLLLSLGLTLDRGLNV-GIKLLPFLLDENEIEIPLEFEIE 61
Query: 109 YFVADNV 115
F+ D +
Sbjct: 62 EFLIDGI 68
|
Length = 256 |
| >gnl|CDD|215640 PLN03232, PLN03232, ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Score = 40.0 bits (93), Expect = 0.001
Identities = 54/205 (26%), Positives = 92/205 (44%), Gaps = 28/205 (13%)
Query: 25 YRPPGTQVDILNGVSFSL-PEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYN- 82
YRP V L+G+SF + P + G++ GR+G+GK+++L L + + G I I +
Sbjct: 1244 YRPGLPPV--LHGLSFFVSPSEKVGVV-GRTGAGKSSMLNALFRIVELEKGRIMIDDCDV 1300
Query: 83 -----NDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLA 137
D S P P +F F N D L E L
Sbjct: 1301 AKFGLTDLRRVLSIIPQSPVLFSGTVRFNIDPFSEHNDAD--------------LWEALE 1346
Query: 138 -LNLQRAI--NWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWK 194
+++ I N GLD + + + S G ++ L+LA L++ +L+LDE A +D +
Sbjct: 1347 RAHIKDVIDRNPFGLDA-EVSEGGENFSVGQRQLLSLARALLRRSKILVLDEATASVDVR 1405
Query: 195 ARADVVKLLKHLKKELTILVVSHDL 219
+ + + ++ K T+LV++H L
Sbjct: 1406 TDSLIQRTIREEFKSCTMLVIAHRL 1430
|
Length = 1495 |
| >gnl|CDD|213238 cd03271, ABC_UvrA_II, ATP-binding cassette domain II of the excision repair protein UvrA | Back alignment and domain information |
|---|
Score = 39.1 bits (92), Expect = 0.001
Identities = 34/96 (35%), Positives = 53/96 (55%), Gaps = 13/96 (13%)
Query: 147 VGLDGTSLDKDPHSLSGGYKRRLALAIQLVQV---PDLLILDEPLAGLDWKARADVVKLL 203
VGL L + +LSGG +R+ LA +L + L ILDEP GL + DV KLL
Sbjct: 156 VGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHF---HDVKKLL 212
Query: 204 KHLKKEL----TILVVSHDLKEMAALVDHSWRMDMG 235
+ L++ + T++V+ H+L ++ D W +D+G
Sbjct: 213 EVLQRLVDKGNTVVVIEHNL-DVIKCAD--WIIDLG 245
|
Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. Length = 261 |
| >gnl|CDD|233062 TIGR00630, uvra, excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Score = 38.8 bits (91), Expect = 0.002
Identities = 30/80 (37%), Positives = 42/80 (52%), Gaps = 10/80 (12%)
Query: 147 VGLDGTSLDKDPHSLSGGYKRRLALAIQL---VQVPDLLILDEPLAGLDWKARADVVKLL 203
VGL L + +LSGG +R+ LA +L L ILDEP GL + D+ KLL
Sbjct: 816 VGLGYIRLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHF---DDIKKLL 872
Query: 204 KHL----KKELTILVVSHDL 219
+ L K T++V+ H+L
Sbjct: 873 EVLQRLVDKGNTVVVIEHNL 892
|
This family is a member of the ABC transporter superfamily of proteins of which all members for which functions are known except the UvrA proteins are involved in the transport of material through membranes. UvrA orthologs are involved in the recognition of DNA damage as a step in nucleotide excision repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University) [DNA metabolism, DNA replication, recombination, and repair]. Length = 925 |
| >gnl|CDD|240339 PTZ00265, PTZ00265, multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Score = 38.5 bits (89), Expect = 0.002
Identities = 27/76 (35%), Positives = 42/76 (55%), Gaps = 5/76 (6%)
Query: 32 VDILNGVSFSLPE-KSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNS 90
V+I ++F+L E K++ + G SG GK+T+L+L+ L PT G I I +N + N
Sbjct: 398 VEIYKDLNFTLTEGKTYAFV-GESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINLK 456
Query: 91 PEPLPPEKVGIVFQFP 106
K+G+V Q P
Sbjct: 457 ---WWRSKIGVVSQDP 469
|
Length = 1466 |
| >gnl|CDD|233206 TIGR00954, 3a01203, Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Score = 38.2 bits (89), Expect = 0.003
Identities = 42/166 (25%), Positives = 70/166 (42%), Gaps = 34/166 (20%)
Query: 33 DIL-NGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSP 91
D+L +SF +P + LI G +G GK++L ++L L G +
Sbjct: 465 DVLIESLSFEVPSGNNLLICGPNGCGKSSLFRILGELWPVYGGRLTK------------- 511
Query: 92 EPLPPEKVGIVFQFPER-YFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLD 150
P + G +F P+R Y + D++I+ P S ++ + +L++ ++ V L
Sbjct: 512 ---PAK--GKLFYVPQRPYMTLGTLRDQIIY--PDSSEDMKRRGLSDKDLEQILDNVQLT 564
Query: 151 -----GTSLD-----KDPHSLSGGYKRRLALAIQLVQVPDLLILDE 186
D LSGG K+R+A+A P ILDE
Sbjct: 565 HILEREGGWSAVQDWMD--VLSGGEKQRIAMARLFYHKPQFAILDE 608
|
[Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 659 |
| >gnl|CDD|222165 pfam13481, AAA_25, AAA domain | Back alignment and domain information |
|---|
Score = 36.5 bits (85), Expect = 0.004
Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 26 RPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLA 66
PP ++ G+ LP L+ G G+GK+TL LA
Sbjct: 17 APPPPLRWLVKGL---LPRGGLTLLAGAPGTGKSTLALDLA 54
|
This AAA domain is found in a wide variety of presumed DNA repair proteins. Length = 154 |
| >gnl|CDD|213246 cd03279, ABC_sbcCD, ATP-binding cassette domain of sbcCD | Back alignment and domain information |
|---|
Score = 37.2 bits (87), Expect = 0.004
Identities = 50/209 (23%), Positives = 79/209 (37%), Gaps = 56/209 (26%)
Query: 38 VSFS-LPEKSFGLIFGRSGSGKTTLLQ----LLAGLSKPTSGSINIRGYNNDGEPNNSPE 92
+ F+ L LI G +G+GK+T+L L G + N+R GE
Sbjct: 20 IDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQENLRSVFAPGE------ 73
Query: 93 PLPPEKVGIVFQF---PERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGL 149
+ + F F ++Y V R G L+ + V L
Sbjct: 74 ----DTAEVSFTFQLGGKKY--------RVE----RSRG---------LDYDQFTRIVLL 108
Query: 150 D----GTSLDKDPHSLSGG--YKRRLALAIQLVQVP--------DLLILDEPLAGLDWKA 195
L + +LSGG + L+LA+ L +V + L +DE LD +A
Sbjct: 109 PQGEFDRFLARPVSTLSGGETFLASLSLALALSEVLQNRGGARLEALFIDEGFGTLDPEA 168
Query: 196 RADVVKLLKHLKKE-LTILVVSH--DLKE 221
V L+ ++ E + V+SH +LKE
Sbjct: 169 LEAVATALELIRTENRMVGVISHVEELKE 197
|
SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends. They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. Length = 213 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 245 | |||
| COG1126 | 240 | GlnQ ABC-type polar amino acid transport system, A | 100.0 | |
| COG1135 | 339 | AbcC ABC-type metal ion transport system, ATPase c | 100.0 | |
| COG1116 | 248 | TauB ABC-type nitrate/sulfonate/bicarbonate transp | 100.0 | |
| COG1120 | 258 | FepC ABC-type cobalamin/Fe3+-siderophores transpor | 100.0 | |
| COG1136 | 226 | SalX ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG1125 | 309 | OpuBA ABC-type proline/glycine betaine transport s | 100.0 | |
| COG1127 | 263 | Ttg2A ABC-type transport system involved in resist | 100.0 | |
| COG2884 | 223 | FtsE Predicted ATPase involved in cell division [C | 100.0 | |
| COG3638 | 258 | ABC-type phosphate/phosphonate transport system, A | 100.0 | |
| COG3842 | 352 | PotA ABC-type spermidine/putrescine transport syst | 100.0 | |
| COG1121 | 254 | ZnuC ABC-type Mn/Zn transport systems, ATPase comp | 100.0 | |
| COG1122 | 235 | CbiO ABC-type cobalt transport system, ATPase comp | 100.0 | |
| COG3839 | 338 | MalK ABC-type sugar transport systems, ATPase comp | 100.0 | |
| COG1124 | 252 | DppF ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| COG1118 | 345 | CysA ABC-type sulfate/molybdate transport systems, | 100.0 | |
| TIGR02314 | 343 | ABC_MetN D-methionine ABC transporter, ATP-binding | 100.0 | |
| COG1117 | 253 | PstB ABC-type phosphate transport system, ATPase c | 100.0 | |
| PRK11650 | 356 | ugpC glycerol-3-phosphate transporter ATP-binding | 100.0 | |
| PRK11432 | 351 | fbpC ferric transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13537 | 306 | nodulation ABC transporter NodI; Provisional | 100.0 | |
| TIGR03265 | 353 | PhnT2 putative 2-aminoethylphosphonate ABC transpo | 100.0 | |
| TIGR00960 | 216 | 3a0501s02 Type II (General) Secretory Pathway (IIS | 100.0 | |
| PRK13536 | 340 | nodulation factor exporter subunit NodI; Provision | 100.0 | |
| COG1131 | 293 | CcmA ABC-type multidrug transport system, ATPase c | 100.0 | |
| cd03261 | 235 | ABC_Org_Solvent_Resistant ABC (ATP-binding cassett | 100.0 | |
| PRK09452 | 375 | potA putrescine/spermidine ABC transporter ATPase | 100.0 | |
| cd03259 | 213 | ABC_Carb_Solutes_like ABC Carbohydrate and Solute | 100.0 | |
| PRK10851 | 353 | sulfate/thiosulfate transporter subunit; Provision | 100.0 | |
| COG4555 | 245 | NatA ABC-type Na+ transport system, ATPase compone | 100.0 | |
| PRK11629 | 233 | lolD lipoprotein transporter ATP-binding subunit; | 100.0 | |
| PRK11607 | 377 | potG putrescine transporter ATP-binding subunit; P | 100.0 | |
| cd03255 | 218 | ABC_MJ0796_Lo1CDE_FtsE This family is comprised of | 100.0 | |
| PRK13643 | 288 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03258 | 362 | PhnT 2-aminoethylphosphonate ABC transport system, | 100.0 | |
| PRK13634 | 290 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11153 | 343 | metN DL-methionine transporter ATP-binding subunit | 100.0 | |
| PRK13637 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG0411 | 250 | LivG ABC-type branched-chain amino acid transport | 100.0 | |
| cd03296 | 239 | ABC_CysA_sulfate_importer Part of the ABC transpor | 100.0 | |
| PRK11000 | 369 | maltose/maltodextrin transporter ATP-binding prote | 100.0 | |
| PRK13631 | 320 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13646 | 286 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03226 | 205 | ABC_cobalt_CbiO_domain2 Domain II of the ABC compo | 100.0 | |
| PRK13651 | 305 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| PRK13647 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG1137 | 243 | YhbG ABC-type (unclassified) transport system, ATP | 100.0 | |
| PRK15079 | 331 | oligopeptide ABC transporter ATP-binding protein O | 100.0 | |
| TIGR01288 | 303 | nodI ATP-binding ABC transporter family nodulation | 100.0 | |
| cd03293 | 220 | ABC_NrtD_SsuB_transporters NrtD and SsuB are the A | 100.0 | |
| cd03301 | 213 | ABC_MalK_N The N-terminal ATPase domain of the mal | 100.0 | |
| cd03265 | 220 | ABC_DrrA DrrA is the ATP-binding protein component | 100.0 | |
| PRK09536 | 402 | btuD corrinoid ABC transporter ATPase; Reviewed | 100.0 | |
| cd03266 | 218 | ABC_NatA_sodium_exporter NatA is the ATPase compon | 100.0 | |
| cd03263 | 220 | ABC_subfamily_A The ABCA subfamily mediates the tr | 100.0 | |
| PRK13641 | 287 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG4175 | 386 | ProV ABC-type proline/glycine betaine transport sy | 100.0 | |
| cd03219 | 236 | ABC_Mj1267_LivG_branched The Mj1267/LivG ABC trans | 100.0 | |
| TIGR02673 | 214 | FtsE cell division ATP-binding protein FtsE. This | 100.0 | |
| PRK13650 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| COG3840 | 231 | ThiQ ABC-type thiamine transport system, ATPase co | 100.0 | |
| TIGR02211 | 221 | LolD_lipo_ex lipoprotein releasing system, ATP-bin | 100.0 | |
| TIGR03522 | 301 | GldA_ABC_ATP gliding motility-associated ABC trans | 100.0 | |
| TIGR02315 | 243 | ABC_phnC phosphonate ABC transporter, ATP-binding | 100.0 | |
| PRK11831 | 269 | putative ABC transporter ATP-binding protein YrbF; | 100.0 | |
| cd03225 | 211 | ABC_cobalt_CbiO_domain1 Domain I of the ABC compon | 100.0 | |
| PRK11022 | 326 | dppD dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK10584 | 228 | putative ABC transporter ATP-binding protein YbbA; | 100.0 | |
| PRK10908 | 222 | cell division protein FtsE; Provisional | 100.0 | |
| cd03260 | 227 | ABC_PstB_phosphate_transporter Phosphate uptake is | 100.0 | |
| cd03257 | 228 | ABC_NikE_OppD_transporters The ABC transporter sub | 100.0 | |
| cd03264 | 211 | ABC_drug_resistance_like ABC-type multidrug transp | 100.0 | |
| cd03258 | 233 | ABC_MetN_methionine_transporter MetN (also known a | 100.0 | |
| cd03218 | 232 | ABC_YhbG The ABC transporters belonging to the Yhb | 100.0 | |
| PRK13636 | 283 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13635 | 279 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR03411 | 242 | urea_trans_UrtD urea ABC transporter, ATP-binding | 100.0 | |
| PRK11308 | 327 | dppF dipeptide transporter ATP-binding subunit; Pr | 100.0 | |
| PRK11247 | 257 | ssuB aliphatic sulfonates transport ATP-binding su | 100.0 | |
| cd03256 | 241 | ABC_PhnC_transporter ABC-type phosphate/phosphonat | 100.0 | |
| cd03268 | 208 | ABC_BcrA_bacitracin_resist The BcrA subfamily repr | 100.0 | |
| TIGR01186 | 363 | proV glycine betaine/L-proline transport ATP bindi | 100.0 | |
| PRK13649 | 280 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11248 | 255 | tauB taurine transporter ATP-binding subunit; Prov | 100.0 | |
| COG0444 | 316 | DppD ABC-type dipeptide/oligopeptide/nickel transp | 100.0 | |
| PRK11264 | 250 | putative amino-acid ABC transporter ATP-binding pr | 100.0 | |
| cd03292 | 214 | ABC_FtsE_transporter FtsE is a hydrophilic nucleot | 100.0 | |
| PRK10070 | 400 | glycine betaine transporter ATP-binding subunit; P | 100.0 | |
| cd03269 | 210 | ABC_putative_ATPase This subfamily is involved in | 100.0 | |
| PRK15093 | 330 | antimicrobial peptide ABC transporter ATP-binding | 100.0 | |
| PRK09493 | 240 | glnQ glutamine ABC transporter ATP-binding protein | 100.0 | |
| PRK13652 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR00972 | 247 | 3a0107s01c2 phosphate ABC transporter, ATP-binding | 100.0 | |
| PRK11300 | 255 | livG leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK09473 | 330 | oppD oligopeptide transporter ATP-binding componen | 100.0 | |
| cd03224 | 222 | ABC_TM1139_LivF_branched LivF (TM1139) is part of | 100.0 | |
| PRK13638 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03294 | 269 | ABC_Pro_Gly_Bertaine This family comprises the gly | 100.0 | |
| PRK14247 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03295 | 242 | ABC_OpuCA_Osmoprotection OpuCA is a the ATP bindin | 100.0 | |
| TIGR03864 | 236 | PQQ_ABC_ATP ABC transporter, ATP-binding subunit, | 100.0 | |
| cd03298 | 211 | ABC_ThiQ_thiamine_transporter ABC-type thiamine tr | 100.0 | |
| cd03262 | 213 | ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP- | 100.0 | |
| PRK13639 | 275 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK11614 | 237 | livF leucine/isoleucine/valine transporter ATP-bin | 100.0 | |
| PRK13632 | 271 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10619 | 257 | histidine/lysine/arginine/ornithine transporter su | 100.0 | |
| PRK14242 | 253 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK10575 | 265 | iron-hydroxamate transporter ATP-binding subunit; | 100.0 | |
| PRK13648 | 269 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13548 | 258 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| PRK13644 | 274 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| TIGR02769 | 265 | nickel_nikE nickel import ATP-binding protein NikE | 100.0 | |
| PRK11124 | 242 | artP arginine transporter ATP-binding subunit; Pro | 100.0 | |
| TIGR01188 | 302 | drrA daunorubicin resistance ABC transporter ATP-b | 100.0 | |
| PRK14273 | 254 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10895 | 241 | lipopolysaccharide ABC transporter ATP-binding pro | 100.0 | |
| PRK13640 | 282 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK10253 | 265 | iron-enterobactin transporter ATP-binding protein; | 100.0 | |
| PRK13645 | 289 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| cd03235 | 213 | ABC_Metallic_Cations ABC component of the metal-ty | 100.0 | |
| PRK11231 | 255 | fecE iron-dicitrate transporter ATP-binding subuni | 100.0 | |
| PRK14250 | 241 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK13633 | 280 | cobalt transporter ATP-binding subunit; Provisiona | 100.0 | |
| COG0410 | 237 | LivF ABC-type branched-chain amino acid transport | 100.0 | |
| COG4181 | 228 | Predicted ABC-type transport system involved in ly | 100.0 | |
| PRK11701 | 258 | phnK phosphonate C-P lyase system protein PhnK; Pr | 100.0 | |
| PRK14268 | 258 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03415 | 382 | ABC_choXWV_ATP choline ABC transporter, ATP-bindin | 100.0 | |
| PRK14267 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14235 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK11144 | 352 | modC molybdate transporter ATP-binding protein; Pr | 100.0 | |
| PRK15112 | 267 | antimicrobial peptide ABC system ATP-binding prote | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| TIGR01277 | 213 | thiQ thiamine ABC transporter, ATP-binding protein | 100.0 | |
| TIGR03005 | 252 | ectoine_ehuA ectoine/hydroxyectoine ABC transporte | 100.0 | |
| cd03252 | 237 | ABCC_Hemolysin The ABC-transporter hemolysin B is | 100.0 | |
| PRK10771 | 232 | thiQ thiamine transporter ATP-binding subunit; Pro | 100.0 | |
| TIGR03410 | 230 | urea_trans_UrtE urea ABC transporter, ATP-binding | 100.0 | |
| cd03297 | 214 | ABC_ModC_molybdenum_transporter ModC is an ABC-typ | 100.0 | |
| PRK10744 | 260 | pstB phosphate transporter ATP-binding protein; Pr | 100.0 | |
| PRK14269 | 246 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02142 | 354 | modC_ABC molybdenum ABC transporter, ATP-binding p | 100.0 | |
| PRK09984 | 262 | phosphonate/organophosphate ester transporter subu | 100.0 | |
| PRK13642 | 277 | cbiO cobalt transporter ATP-binding subunit; Provi | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| TIGR03873 | 256 | F420-0_ABC_ATP proposed F420-0 ABC transporter, AT | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| PRK14248 | 268 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14239 | 252 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| TIGR01978 | 243 | sufC FeS assembly ATPase SufC. SufC is part of the | 100.0 | |
| cd03251 | 234 | ABCC_MsbA MsbA is an essential ABC transporter, cl | 100.0 | |
| PRK14274 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14245 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14256 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR03740 | 223 | galliderm_ABC gallidermin-class lantibiotic protec | 100.0 | |
| PRK14241 | 258 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG1123 | 539 | ATPase components of various ABC-type transport sy | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| TIGR02323 | 253 | CP_lyasePhnK phosphonate C-P lyase system protein | 100.0 | |
| cd03248 | 226 | ABCC_TAP TAP, the Transporter Associated with Anti | 100.0 | |
| PRK14270 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03245 | 220 | ABCC_bacteriocin_exporters ABC-type bacteriocin ex | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| PRK14251 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14237 | 267 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| PRK14259 | 269 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| PRK13547 | 272 | hmuV hemin importer ATP-binding subunit; Provision | 100.0 | |
| cd03267 | 236 | ABC_NatA_like Similar in sequence to NatA, this is | 100.0 | |
| PRK14262 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14254 | 285 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03234 | 226 | ABCG_White The White subfamily represents ABC tran | 100.0 | |
| cd03300 | 232 | ABC_PotA_N PotA is an ABC-type transporter and the | 100.0 | |
| PRK14240 | 250 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG4152 | 300 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| cd03249 | 238 | ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) | 100.0 | |
| PRK14272 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14249 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14253 | 249 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14275 | 286 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14271 | 276 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK10247 | 225 | putative ABC transporter ATP-binding protein YbbL; | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| cd03299 | 235 | ABC_ModC_like Archeal protein closely related to M | 100.0 | |
| PRK10419 | 268 | nikE nickel transporter ATP-binding protein NikE; | 100.0 | |
| PRK14238 | 271 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| cd03254 | 229 | ABCC_Glucan_exporter_like Glucan exporter ATP-bind | 100.0 | |
| TIGR00968 | 237 | 3a0106s01 sulfate ABC transporter, ATP-binding pro | 100.0 | |
| TIGR02982 | 220 | heterocyst_DevA ABC exporter ATP-binding subunit, | 100.0 | |
| PRK15056 | 272 | manganese/iron transporter ATP-binding protein; Pr | 100.0 | |
| TIGR03608 | 206 | L_ocin_972_ABC putative bacteriocin export ABC tra | 100.0 | |
| PRK14261 | 253 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14244 | 251 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| PRK14265 | 274 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14257 | 329 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14236 | 272 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| CHL00131 | 252 | ycf16 sulfate ABC transporter protein; Validated | 100.0 | |
| PRK14255 | 252 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| PRK14243 | 264 | phosphate transporter ATP-binding protein; Provisi | 100.0 | |
| COG4525 | 259 | TauB ABC-type taurine transport system, ATPase com | 100.0 | |
| cd03244 | 221 | ABCC_MRP_domain2 Domain 2 of the ABC subfamily C. | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| cd03253 | 236 | ABCC_ATM1_transporter ATM1 is an ABC transporter t | 100.0 | |
| PRK10261 | 623 | glutathione transporter ATP-binding protein; Provi | 100.0 | |
| PRK10418 | 254 | nikD nickel transporter ATP-binding protein NikD; | 100.0 | |
| PRK14252 | 265 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK14260 | 259 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR02324 | 224 | CP_lyasePhnL phosphonate C-P lyase system protein | 100.0 | |
| PRK13543 | 214 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK13549 | 506 | xylose transporter ATP-binding subunit; Provisiona | 100.0 | |
| COG4598 | 256 | HisP ABC-type histidine transport system, ATPase c | 100.0 | |
| PRK13538 | 204 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| PRK14246 | 257 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| TIGR01184 | 230 | ntrCD nitrate transport ATP-binding subunits C and | 100.0 | |
| COG2274 | 709 | SunT ABC-type bacteriocin/lantibiotic exporters, c | 100.0 | |
| PRK15134 | 529 | microcin C ABC transporter ATP-binding protein Yej | 100.0 | |
| TIGR02633 | 500 | xylG D-xylose ABC transporter, ATP-binding protein | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK14263 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK11174 | 588 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| cd03369 | 207 | ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-ty | 100.0 | |
| PRK09700 | 510 | D-allose transporter ATP-binding protein; Provisio | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| cd03231 | 201 | ABC_CcmA_heme_exporter CcmA, the ATP-binding compo | 100.0 | |
| TIGR03269 | 520 | met_CoM_red_A2 methyl coenzyme M reductase system, | 100.0 | |
| PRK14266 | 250 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09580 | 248 | sufC cysteine desulfurase ATPase component; Review | 100.0 | |
| PRK14258 | 261 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| cd03215 | 182 | ABC_Carb_Monos_II This family represents domain II | 100.0 | |
| PRK14264 | 305 | phosphate ABC transporter ATP-binding protein; Pro | 100.0 | |
| PRK09544 | 251 | znuC high-affinity zinc transporter ATPase; Review | 100.0 | |
| cd03230 | 173 | ABC_DR_subfamily_A This family of ATP-binding prot | 100.0 | |
| cd03288 | 257 | ABCC_SUR2 The SUR domain 2. The sulfonylurea recep | 100.0 | |
| cd03289 | 275 | ABCC_CFTR2 The CFTR subfamily domain 2. The cystic | 100.0 | |
| TIGR02770 | 230 | nickel_nikD nickel import ATP-binding protein NikD | 100.0 | |
| PRK03695 | 248 | vitamin B12-transporter ATPase; Provisional | 100.0 | |
| PRK11176 | 582 | lipid transporter ATP-binding/permease protein; Pr | 100.0 | |
| cd03233 | 202 | ABC_PDR_domain1 The pleiotropic drug resistance (P | 100.0 | |
| cd03247 | 178 | ABCC_cytochrome_bd The CYD subfamily implicated in | 100.0 | |
| cd03246 | 173 | ABCC_Protease_Secretion This family represents the | 100.0 | |
| cd03229 | 178 | ABC_Class3 This class is comprised of all BPD (Bin | 100.0 | |
| TIGR03797 | 686 | NHPM_micro_ABC2 NHPM bacteriocin system ABC transp | 100.0 | |
| cd03220 | 224 | ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transpo | 100.0 | |
| TIGR03796 | 710 | NHPM_micro_ABC1 NHPM bacteriocin system ABC transp | 100.0 | |
| COG4988 | 559 | CydD ABC-type transport system involved in cytochr | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 100.0 | |
| COG4559 | 259 | ABC-type hemin transport system, ATPase component | 100.0 | |
| COG4604 | 252 | CeuD ABC-type enterochelin transport system, ATPas | 100.0 | |
| cd03214 | 180 | ABC_Iron-Siderophores_B12_Hemin ABC transporters, | 100.0 | |
| COG4161 | 242 | ArtP ABC-type arginine transport system, ATPase co | 100.0 | |
| TIGR03375 | 694 | type_I_sec_LssB type I secretion system ATPase, Ls | 100.0 | |
| PRK13539 | 207 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03228 | 171 | ABCC_MRP_Like The MRP (Mutidrug Resistance Protein | 100.0 | |
| PRK11160 | 574 | cysteine/glutathione ABC transporter membrane/ATP- | 100.0 | |
| cd03213 | 194 | ABCG_EPDR ABCG transporters are involved in eye pi | 100.0 | |
| PRK13540 | 200 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| cd03250 | 204 | ABCC_MRP_domain1 Domain 1 of the ABC subfamily C. | 100.0 | |
| PRK10790 | 592 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| PRK10762 | 501 | D-ribose transporter ATP binding protein; Provisio | 100.0 | |
| TIGR01189 | 198 | ccmA heme ABC exporter, ATP-binding protein CcmA. | 100.0 | |
| COG1132 | 567 | MdlB ABC-type multidrug transport system, ATPase a | 100.0 | |
| PRK11288 | 501 | araG L-arabinose transporter ATP-binding protein; | 100.0 | |
| KOG0058 | 716 | consensus Peptide exporter, ABC superfamily [Intra | 100.0 | |
| PRK13657 | 588 | cyclic beta-1,2-glucan ABC transporter; Provisiona | 100.0 | |
| cd03232 | 192 | ABC_PDR_domain2 The pleiotropic drug resistance-li | 100.0 | |
| TIGR01166 | 190 | cbiO cobalt transport protein ATP-binding subunit. | 100.0 | |
| PRK15439 | 510 | autoinducer 2 ABC transporter ATP-binding protein | 100.0 | |
| cd03290 | 218 | ABCC_SUR1_N The SUR domain 1. The sulfonylurea rec | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| TIGR01842 | 544 | type_I_sec_PrtD type I secretion system ABC transp | 100.0 | |
| TIGR00958 | 711 | 3a01208 Conjugate Transporter-2 (CT2) Family prote | 100.0 | |
| TIGR02203 | 571 | MsbA_lipidA lipid A export permease/ATP-binding pr | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| COG4608 | 268 | AppF ABC-type oligopeptide transport system, ATPas | 100.0 | |
| cd03217 | 200 | ABC_FeS_Assembly ABC-type transport system involve | 100.0 | |
| COG4987 | 573 | CydC ABC-type transport system involved in cytochr | 100.0 | |
| TIGR01846 | 694 | type_I_sec_HlyB type I secretion system ABC transp | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| TIGR01193 | 708 | bacteriocin_ABC ABC-type bacteriocin transporter. | 100.0 | |
| TIGR01257 | 2272 | rim_protein retinal-specific rim ABC transporter. | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PRK10982 | 491 | galactose/methyl galaxtoside transporter ATP-bindi | 100.0 | |
| TIGR02204 | 576 | MsbA_rel ABC transporter, permease/ATP-binding pro | 100.0 | |
| TIGR01192 | 585 | chvA glucan exporter ATP-binding protein. This mod | 100.0 | |
| cd03216 | 163 | ABC_Carb_Monos_I This family represents the domain | 100.0 | |
| COG4148 | 352 | ModC ABC-type molybdate transport system, ATPase c | 100.0 | |
| PRK10938 | 490 | putative molybdenum transport ATP-binding protein | 100.0 | |
| PRK10789 | 569 | putative multidrug transporter membrane\ATP-bindin | 100.0 | |
| cd03223 | 166 | ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cass | 100.0 | |
| COG4619 | 223 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK15064 | 530 | ABC transporter ATP-binding protein; Provisional | 100.0 | |
| TIGR02857 | 529 | CydD thiol reductant ABC exporter, CydD subunit. U | 100.0 | |
| PRK13546 | 264 | teichoic acids export protein ATP-binding subunit; | 100.0 | |
| TIGR03771 | 223 | anch_rpt_ABC anchored repeat-type ABC transporter, | 100.0 | |
| PRK13545 | 549 | tagH teichoic acids export protein ATP-binding sub | 100.0 | |
| COG4172 | 534 | ABC-type uncharacterized transport system, duplica | 100.0 | |
| PRK13541 | 195 | cytochrome c biogenesis protein CcmA; Provisional | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| TIGR03719 | 552 | ABC_ABC_ChvD ATP-binding cassette protein, ChvD fa | 100.0 | |
| KOG0057 | 591 | consensus Mitochondrial Fe/S cluster exporter, ABC | 100.0 | |
| TIGR02868 | 529 | CydC thiol reductant ABC exporter, CydC subunit. T | 100.0 | |
| PRK10535 | 648 | macrolide transporter ATP-binding /permease protei | 100.0 | |
| PRK11819 | 556 | putative ABC transporter ATP-binding protein; Revi | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| COG1119 | 257 | ModF ABC-type molybdenum transport system, ATPase | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| cd03237 | 246 | ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 o | 100.0 | |
| PLN03211 | 659 | ABC transporter G-25; Provisional | 100.0 | |
| TIGR01187 | 325 | potA spermidine/putrescine ABC transporter ATP-bin | 100.0 | |
| COG4674 | 249 | Uncharacterized ABC-type transport system, ATPase | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| cd03291 | 282 | ABCC_CFTR1 The CFTR subfamily domain 1. The cystic | 100.0 | |
| PRK10522 | 547 | multidrug transporter membrane component/ATP-bindi | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR01194 | 555 | cyc_pep_trnsptr cyclic peptide transporter. This m | 100.0 | |
| PRK10636 | 638 | putative ABC transporter ATP-binding protein; Prov | 100.0 | |
| cd03236 | 255 | ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 o | 100.0 | |
| cd03221 | 144 | ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is | 100.0 | |
| COG1101 | 263 | PhnK ABC-type uncharacterized transport system, AT | 100.0 | |
| KOG0055 | 1228 | consensus Multidrug/pheromone exporter, ABC superf | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| PRK15177 | 213 | Vi polysaccharide export ATP-binding protein VexC; | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| PRK11147 | 635 | ABC transporter ATPase component; Reviewed | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| PTZ00265 | 1466 | multidrug resistance protein (mdr1); Provisional | 100.0 | |
| COG0396 | 251 | sufC Cysteine desulfurase activator ATPase [Posttr | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| TIGR00955 | 617 | 3a01204 The Eye Pigment Precursor Transporter (EPP | 100.0 | |
| TIGR00954 | 659 | 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FA | 100.0 | |
| COG4167 | 267 | SapF ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG4586 | 325 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| COG4618 | 580 | ArpD ABC-type protease/lipase transport system, AT | 100.0 | |
| cd03222 | 177 | ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibi | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| COG4136 | 213 | ABC-type uncharacterized transport system, ATPase | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| COG4107 | 258 | PhnK ABC-type phosphonate transport system, ATPase | 100.0 | |
| PRK13409 | 590 | putative ATPase RIL; Provisional | 100.0 | |
| cd00267 | 157 | ABC_ATPase ABC (ATP-binding cassette) transporter | 100.0 | |
| cd03238 | 176 | ABC_UvrA The excision repair protein UvrA; Nucleot | 100.0 | |
| TIGR00957 | 1522 | MRP_assoc_pro multi drug resistance-associated pro | 100.0 | |
| COG1134 | 249 | TagH ABC-type polysaccharide/polyol phosphate tran | 100.0 | |
| PLN03073 | 718 | ABC transporter F family; Provisional | 100.0 | |
| PLN03232 | 1495 | ABC transporter C family member; Provisional | 100.0 | |
| PLN03130 | 1622 | ABC transporter C family member; Provisional | 100.0 | |
| TIGR00956 | 1394 | 3a01205 Pleiotropic Drug Resistance (PDR) Family p | 100.0 | |
| KOG0056 | 790 | consensus Heavy metal exporter HMT1, ABC superfami | 100.0 | |
| TIGR01271 | 1490 | CFTR_protein cystic fibrosis transmembrane conduct | 100.0 | |
| COG4133 | 209 | CcmA ABC-type transport system involved in cytochr | 100.0 | |
| PLN03140 | 1470 | ABC transporter G family member; Provisional | 100.0 | |
| KOG0059 | 885 | consensus Lipid exporter ABCA1 and related protein | 100.0 | |
| COG0488 | 530 | Uup ATPase components of ABC transporters with dup | 100.0 | |
| PTZ00243 | 1560 | ABC transporter; Provisional | 100.0 | |
| cd03270 | 226 | ABC_UvrA_I The excision repair protein UvrA domain | 100.0 | |
| COG4778 | 235 | PhnL ABC-type phosphonate transport system, ATPase | 100.0 | |
| COG5265 | 497 | ATM1 ABC-type transport system involved in Fe-S cl | 100.0 | |
| KOG0061 | 613 | consensus Transporter, ABC superfamily (Breast can | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| cd03278 | 197 | ABC_SMC_barmotin Barmotin is a tight junction-asso | 100.0 | |
| KOG0054 | 1381 | consensus Multidrug resistance-associated protein/ | 100.0 | |
| PF00005 | 137 | ABC_tran: ABC transporter This structure is on hol | 100.0 | |
| cd03271 | 261 | ABC_UvrA_II The excision repair protein UvrA domai | 100.0 | |
| COG1129 | 500 | MglA ABC-type sugar transport system, ATPase compo | 100.0 | |
| cd03273 | 251 | ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC protein | 100.0 | |
| cd03279 | 213 | ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complex | 100.0 | |
| COG4138 | 248 | BtuD ABC-type cobalamin transport system, ATPase c | 100.0 | |
| cd03272 | 243 | ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC protein | 100.0 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 100.0 | |
| cd03274 | 212 | ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC protein | 100.0 | |
| cd03240 | 204 | ABC_Rad50 The catalytic domains of Rad50 are simil | 100.0 | |
| COG4170 | 330 | SapD ABC-type antimicrobial peptide transport syst | 100.0 | |
| COG3845 | 501 | ABC-type uncharacterized transport systems, ATPase | 99.98 | |
| COG4178 | 604 | ABC-type uncharacterized transport system, permeas | 99.97 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.97 | |
| COG4615 | 546 | PvdE ABC-type siderophore export system, fused ATP | 99.97 | |
| KOG0927 | 614 | consensus Predicted transporter (ABC superfamily) | 99.97 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.97 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.97 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.97 | |
| cd03275 | 247 | ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC protein | 99.97 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.97 | |
| cd03276 | 198 | ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC protein | 99.97 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.96 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.96 | |
| KOG0060 | 659 | consensus Long-chain acyl-CoA transporter, ABC sup | 99.96 | |
| KOG0062 | 582 | consensus ATPase component of ABC transporters wit | 99.96 | |
| KOG2355 | 291 | consensus Predicted ABC-type transport, ATPase com | 99.95 | |
| cd03280 | 200 | ABC_MutS2 MutS2 homologs in bacteria and eukaryote | 99.94 | |
| cd03277 | 213 | ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC protein | 99.94 | |
| KOG0064 | 728 | consensus Peroxisomal long-chain acyl-CoA transpor | 99.93 | |
| COG1245 | 591 | Predicted ATPase, RNase L inhibitor (RLI) homolog | 99.92 | |
| cd03239 | 178 | ABC_SMC_head The structural maintenance of chromos | 99.92 | |
| COG2401 | 593 | ABC-type ATPase fused to a predicted acetyltransfe | 99.92 | |
| cd03283 | 199 | ABC_MutS-like MutS-like homolog in eukaryotes. The | 99.9 | |
| cd03241 | 276 | ABC_RecN RecN ATPase involved in DNA repair; ABC ( | 99.9 | |
| cd03227 | 162 | ABC_Class2 ABC-type Class 2 contains systems invol | 99.9 | |
| KOG0065 | 1391 | consensus Pleiotropic drug resistance proteins (PD | 99.9 | |
| cd03285 | 222 | ABC_MSH2_euk MutS2 homolog in eukaryotes. The MutS | 99.89 | |
| cd03243 | 202 | ABC_MutS_homologs The MutS protein initiates DNA m | 99.87 | |
| PRK00635 | 1809 | excinuclease ABC subunit A; Provisional | 99.87 | |
| KOG0066 | 807 | consensus eIF2-interacting protein ABC50 (ABC supe | 99.87 | |
| cd03242 | 270 | ABC_RecF RecF is a recombinational DNA repair ATPa | 99.85 | |
| PRK00349 | 943 | uvrA excinuclease ABC subunit A; Reviewed | 99.85 | |
| cd03282 | 204 | ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS | 99.85 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.85 | |
| TIGR00630 | 924 | uvra excinuclease ABC, A subunit. This family is b | 99.84 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.83 | |
| cd03284 | 216 | ABC_MutS1 MutS1 homolog in eukaryotes. The MutS pr | 99.79 | |
| cd03281 | 213 | ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS | 99.76 | |
| TIGR02858 | 270 | spore_III_AA stage III sporulation protein AA. Mem | 99.76 | |
| smart00534 | 185 | MUTSac ATPase domain of DNA mismatch repair MUTS f | 99.76 | |
| PF02463 | 220 | SMC_N: RecF/RecN/SMC N terminal domain; InterPro: | 99.75 | |
| TIGR01069 | 771 | mutS2 MutS2 family protein. Function of MutS2 is u | 99.73 | |
| cd00820 | 107 | PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPC | 99.64 | |
| TIGR00634 | 563 | recN DNA repair protein RecN. All proteins in this | 99.64 | |
| cd03287 | 222 | ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS | 99.63 | |
| PRK00409 | 782 | recombination and DNA strand exchange inhibitor pr | 99.63 | |
| TIGR00618 | 1042 | sbcc exonuclease SbcC. This family is based on the | 99.62 | |
| KOG0063 | 592 | consensus RNAse L inhibitor, ABC superfamily [RNA | 99.62 | |
| PTZ00132 | 215 | GTP-binding nuclear protein Ran; Provisional | 99.62 | |
| PRK07721 | 438 | fliI flagellum-specific ATP synthase; Validated | 99.62 | |
| PHA02562 | 562 | 46 endonuclease subunit; Provisional | 99.6 | |
| PRK10869 | 553 | recombination and repair protein; Provisional | 99.6 | |
| cd01128 | 249 | rho_factor Transcription termination factor rho is | 99.57 | |
| PRK13695 | 174 | putative NTPase; Provisional | 99.55 | |
| PRK08533 | 230 | flagellar accessory protein FlaH; Reviewed | 99.53 | |
| cd03286 | 218 | ABC_MSH6_euk MutS6 homolog in eukaryotes. The MutS | 99.53 | |
| PF13304 | 303 | AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T | 99.52 | |
| PRK03918 | 880 | chromosome segregation protein; Provisional | 99.52 | |
| PRK01156 | 895 | chromosome segregation protein; Provisional | 99.51 | |
| PRK10246 | 1047 | exonuclease subunit SbcC; Provisional | 99.51 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 99.5 | |
| cd01124 | 187 | KaiC KaiC is a circadian clock protein primarily f | 99.49 | |
| TIGR02168 | 1179 | SMC_prok_B chromosome segregation protein SMC, com | 99.47 | |
| PRK06793 | 432 | fliI flagellum-specific ATP synthase; Validated | 99.44 | |
| COG3910 | 233 | Predicted ATPase [General function prediction only | 99.41 | |
| TIGR02169 | 1164 | SMC_prok_A chromosome segregation protein SMC, pri | 99.39 | |
| TIGR03238 | 504 | dnd_assoc_3 dnd system-associated protein 3. cereu | 99.39 | |
| TIGR02788 | 308 | VirB11 P-type DNA transfer ATPase VirB11. The VirB | 99.38 | |
| PRK13830 | 818 | conjugal transfer protein TrbE; Provisional | 99.36 | |
| PRK00064 | 361 | recF recombination protein F; Reviewed | 99.36 | |
| COG0178 | 935 | UvrA Excinuclease ATPase subunit [DNA replication, | 99.35 | |
| cd01120 | 165 | RecA-like_NTPases RecA-like NTPases. This family i | 99.31 | |
| PRK02224 | 880 | chromosome segregation protein; Provisional | 99.29 | |
| PRK06002 | 450 | fliI flagellum-specific ATP synthase; Validated | 99.18 | |
| PRK06067 | 234 | flagellar accessory protein FlaH; Validated | 99.17 | |
| TIGR00611 | 365 | recf recF protein. All proteins in this family for | 99.15 | |
| cd01125 | 239 | repA Hexameric Replicative Helicase RepA. RepA is | 99.13 | |
| cd01131 | 198 | PilT Pilus retraction ATPase PilT. PilT is a nucle | 99.12 | |
| PRK06995 | 484 | flhF flagellar biosynthesis regulator FlhF; Valida | 99.06 | |
| smart00382 | 148 | AAA ATPases associated with a variety of cellular | 99.06 | |
| cd01130 | 186 | VirB11-like_ATPase Type IV secretory pathway compo | 99.05 | |
| TIGR01026 | 440 | fliI_yscN ATPase FliI/YscN family. This family of | 99.04 | |
| PRK13891 | 852 | conjugal transfer protein TrbE; Provisional | 99.04 | |
| TIGR02655 | 484 | circ_KaiC circadian clock protein KaiC. Members of | 99.04 | |
| cd02023 | 198 | UMPK Uridine monophosphate kinase (UMPK, EC 2.7.1. | 99.03 | |
| PRK14079 | 349 | recF recombination protein F; Provisional | 99.0 | |
| COG0419 | 908 | SbcC ATPase involved in DNA repair [DNA replicatio | 98.98 | |
| TIGR02680 | 1353 | conserved hypothetical protein TIGR02680. Members | 98.96 | |
| PRK06315 | 442 | type III secretion system ATPase; Provisional | 98.95 | |
| PRK05399 | 854 | DNA mismatch repair protein MutS; Provisional | 98.95 | |
| PRK07196 | 434 | fliI flagellum-specific ATP synthase; Validated | 98.9 | |
| PRK08149 | 428 | ATP synthase SpaL; Validated | 98.84 | |
| PLN03210 | 1153 | Resistant to P. syringae 6; Provisional | 98.79 | |
| TIGR02903 | 615 | spore_lon_C ATP-dependent protease, Lon family. Me | 98.77 | |
| PRK09825 | 176 | idnK D-gluconate kinase; Provisional | 98.77 | |
| TIGR03881 | 229 | KaiC_arch_4 KaiC domain protein, PAE1156 family. M | 98.77 | |
| cd01876 | 170 | YihA_EngB The YihA (EngB) subfamily. This subfamil | 98.76 | |
| PRK13898 | 800 | type IV secretion system ATPase VirB4; Provisional | 98.71 | |
| PF13558 | 90 | SbcCD_C: Putative exonuclease SbcCD, C subunit; PD | 98.7 | |
| PRK07594 | 433 | type III secretion system ATPase SsaN; Validated | 98.69 | |
| TIGR01420 | 343 | pilT_fam pilus retraction protein PilT. This model | 98.67 | |
| PF13555 | 62 | AAA_29: P-loop containing region of AAA domain | 98.67 | |
| PRK10078 | 186 | ribose 1,5-bisphosphokinase; Provisional | 98.67 | |
| PRK00454 | 196 | engB GTP-binding protein YsxC; Reviewed | 98.66 | |
| cd01136 | 326 | ATPase_flagellum-secretory_path_III Flagellum-spec | 98.65 | |
| PRK09862 | 506 | putative ATP-dependent protease; Provisional | 98.64 | |
| TIGR00235 | 207 | udk uridine kinase. Model contains a number of lon | 98.64 | |
| TIGR00767 | 415 | rho transcription termination factor Rho. Members | 98.63 | |
| TIGR00152 | 188 | dephospho-CoA kinase. This model produces scores i | 98.63 | |
| PRK01889 | 356 | GTPase RsgA; Reviewed | 98.57 | |
| PRK09099 | 441 | type III secretion system ATPase; Provisional | 98.55 | |
| PF00488 | 235 | MutS_V: MutS domain V C-terminus.; InterPro: IPR00 | 98.55 | |
| PRK00300 | 205 | gmk guanylate kinase; Provisional | 98.55 | |
| PRK07960 | 455 | fliI flagellum-specific ATP synthase; Validated | 98.54 | |
| PRK14723 | 767 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.51 | |
| cd00009 | 151 | AAA The AAA+ (ATPases Associated with a wide varie | 98.51 | |
| TIGR02546 | 422 | III_secr_ATP type III secretion apparatus H+-trans | 98.5 | |
| PRK10416 | 318 | signal recognition particle-docking protein FtsY; | 98.49 | |
| PRK14722 | 374 | flhF flagellar biosynthesis regulator FlhF; Provis | 98.49 | |
| TIGR03498 | 418 | FliI_clade3 flagellar protein export ATPase FliI. | 98.48 | |
| TIGR00606 | 1311 | rad50 rad50. This family is based on the phylogeno | 98.48 |
| >COG1126 GlnQ ABC-type polar amino acid transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-68 Score=435.38 Aligned_cols=217 Identities=30% Similarity=0.444 Sum_probs=193.1
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
+||+++||+|+|++ ..+|++|||+|++||+++|+||||||||||||||+||.+|++|+|+++|+++.... .....
T Consensus 1 ~mi~i~~l~K~fg~--~~VLkgi~l~v~~Gevv~iiGpSGSGKSTlLRclN~LE~~~~G~I~i~g~~~~~~~---~~~~~ 75 (240)
T COG1126 1 MMIEIKNLSKSFGD--KEVLKGISLSVEKGEVVVIIGPSGSGKSTLLRCLNGLEEPDSGSITVDGEDVGDKK---DILKL 75 (240)
T ss_pred CeEEEEeeeEEeCC--eEEecCcceeEcCCCEEEEECCCCCCHHHHHHHHHCCcCCCCceEEECCEeccchh---hHHHH
Confidence 47999999999975 57999999999999999999999999999999999999999999999998764322 11234
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
|+++|+|||+++ +|+++||.||+.++. ..... ..+.+.++.+.++|+.+||.+. .+.||.+|||||||||+|||||
T Consensus 76 R~~vGmVFQ~fn-LFPHlTvleNv~lap-~~v~~-~~k~eA~~~A~~lL~~VGL~~k-a~~yP~qLSGGQqQRVAIARAL 151 (240)
T COG1126 76 RRKVGMVFQQFN-LFPHLTVLENVTLAP-VKVKK-LSKAEAREKALELLEKVGLADK-ADAYPAQLSGGQQQRVAIARAL 151 (240)
T ss_pred HHhcCeeccccc-ccccchHHHHHHhhh-HHHcC-CCHHHHHHHHHHHHHHcCchhh-hhhCccccCcHHHHHHHHHHHH
Confidence 788999999985 899999999999872 21111 1245566788999999999986 7999999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+++|+++|+|||||+|||+...++++.++++++ +.|+|+|||++.++.+.+|||++|++|+++.++
T Consensus 152 aM~P~vmLFDEPTSALDPElv~EVL~vm~~LA~eGmTMivVTHEM~FAr~VadrviFmd~G~iie~g 218 (240)
T COG1126 152 AMDPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMIIVTHEMGFAREVADRVIFMDQGKIIEEG 218 (240)
T ss_pred cCCCCEEeecCCcccCCHHHHHHHHHHHHHHHHcCCeEEEEechhHHHHHhhheEEEeeCCEEEEec
Confidence 999999999999999999999999999999975 699999999999999999999999999998887
|
|
| >COG1135 AbcC ABC-type metal ion transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-64 Score=429.23 Aligned_cols=220 Identities=30% Similarity=0.468 Sum_probs=196.3
Q ss_pred eEEEEeEEEECCCC---ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGT---QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 17 ~l~~~~l~~~y~~~---~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
||++++|+|.|... ...+++||||+|++||++||+|.||||||||+|+|++|.+|++|+|.++|+++...+.....
T Consensus 1 mI~l~~vsK~~~~~~~~~~~al~~vsL~I~~GeI~GIIG~SGAGKSTLiR~iN~Le~PtsG~v~v~G~di~~l~~~~Lr- 79 (339)
T COG1135 1 MIELENVSKTFGQTGTGTVTALDDVSLEIPKGEIFGIIGYSGAGKSTLLRLINLLERPTSGSVFVDGQDLTALSEAELR- 79 (339)
T ss_pred CeEEEeeeeeeccCCCCceeeeccceEEEcCCcEEEEEcCCCCcHHHHHHHHhccCCCCCceEEEcCEecccCChHHHH-
Confidence 68999999999752 24699999999999999999999999999999999999999999999999998765443222
Q ss_pred CCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
..|++|||+||+++ ++...||++|++|++.... ..+++.+.++.++++.+||++. .+++|.+|||||||||+|||
T Consensus 80 ~~R~~IGMIFQhFn-LLssrTV~~NvA~PLeiag---~~k~ei~~RV~elLelVgL~dk-~~~yP~qLSGGQKQRVaIAR 154 (339)
T COG1135 80 QLRQKIGMIFQHFN-LLSSRTVFENVAFPLELAG---VPKAEIKQRVAELLELVGLSDK-ADRYPAQLSGGQKQRVAIAR 154 (339)
T ss_pred HHHhhccEEecccc-ccccchHHhhhhhhHhhcC---CCHHHHHHHHHHHHHHcCChhh-hccCchhcCcchhhHHHHHH
Confidence 34688999999985 7778999999999743322 2356677889999999999975 79999999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
||+.+|++||.|||||+|||++.+.++++|+++++ +.||++|||.|+.+.++||||.+|++|+++.++.
T Consensus 155 ALa~~P~iLL~DEaTSALDP~TT~sIL~LL~~In~~lglTIvlITHEm~Vvk~ic~rVavm~~G~lvE~G~ 225 (339)
T COG1135 155 ALANNPKILLCDEATSALDPETTQSILELLKDINRELGLTIVLITHEMEVVKRICDRVAVLDQGRLVEEGT 225 (339)
T ss_pred HHhcCCCEEEecCccccCChHHHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHhhhheEeeCCEEEEecc
Confidence 99999999999999999999999999999999975 5899999999999999999999999999998765
|
|
| >COG1116 TauB ABC-type nitrate/sulfonate/bicarbonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-62 Score=408.75 Aligned_cols=212 Identities=37% Similarity=0.522 Sum_probs=186.8
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
.+++++++++.|++ ..+|+|+||+|.+||+++|+||||||||||||+|+|+.+|++|+|.++|+.+.+.
T Consensus 2 ~~l~i~~v~~~f~~--~~vl~~i~L~v~~GEfvsilGpSGcGKSTLLriiAGL~~p~~G~V~~~g~~v~~p--------- 70 (248)
T COG1116 2 ALLEIEGVSKSFGG--VEVLEDINLSVEKGEFVAILGPSGCGKSTLLRLIAGLEKPTSGEVLLDGRPVTGP--------- 70 (248)
T ss_pred ceEEEEeeEEEeCc--eEEeccceeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCcccCCC---------
Confidence 46899999999975 5799999999999999999999999999999999999999999999999877321
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
...+|||||++. +|+..||++|+.++...... .+.+..+++.++++.+||.+. .+++|++|||||||||+|||||
T Consensus 71 ~~~~~~vFQ~~~-LlPW~Tv~~NV~l~l~~~~~---~~~e~~~~a~~~L~~VgL~~~-~~~~P~qLSGGMrQRVaiARAL 145 (248)
T COG1116 71 GPDIGYVFQEDA-LLPWLTVLDNVALGLELRGK---SKAEARERAKELLELVGLAGF-EDKYPHQLSGGMRQRVAIARAL 145 (248)
T ss_pred CCCEEEEeccCc-ccchhhHHhhheehhhcccc---chHhHHHHHHHHHHHcCCcch-hhcCccccChHHHHHHHHHHHH
Confidence 356999999985 88999999999998543221 133344578999999999986 7999999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeC--CeEEEeccC
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDM--GGFLVEQRI 243 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~--G~i~~~~~~ 243 (245)
+.+|++|||||||++||..++..+.+.+.++-+ ++||++||||++++-.++|||++|.+ |++..+-.+
T Consensus 146 ~~~P~lLLlDEPFgALDalTR~~lq~~l~~lw~~~~~TvllVTHdi~EAv~LsdRivvl~~~P~~i~~~~~i 217 (248)
T COG1116 146 ATRPKLLLLDEPFGALDALTREELQDELLRLWEETRKTVLLVTHDVDEAVYLADRVVVLSNRPGRIGEELEI 217 (248)
T ss_pred hcCCCEEEEcCCcchhhHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHhhhCEEEEecCCCcceeeEEec
Confidence 999999999999999999999999999999843 58999999999999999999999998 556554433
|
|
| >COG1120 FepC ABC-type cobalamin/Fe3+-siderophores transport systems, ATPase components [Inorganic ion transport and metabolism / Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-62 Score=414.00 Aligned_cols=220 Identities=32% Similarity=0.446 Sum_probs=194.1
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
++|+++||+++|++ +++++|+||++++||+++|+||||||||||||+|+|+++|.+|+|.++|+++...+. +.+
T Consensus 1 ~~L~~~~ls~~y~~--~~il~~ls~~i~~G~i~~iiGpNG~GKSTLLk~l~g~l~p~~G~V~l~g~~i~~~~~----kel 74 (258)
T COG1120 1 MMLEVENLSFGYGG--KPILDDLSFSIPKGEITGILGPNGSGKSTLLKCLAGLLKPKSGEVLLDGKDIASLSP----KEL 74 (258)
T ss_pred CeeEEEEEEEEECC--eeEEecceEEecCCcEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCCchhhcCH----HHH
Confidence 36999999999974 579999999999999999999999999999999999999999999999999876543 345
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCch-hHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSI-QLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
.+++|||||.+. ..+.+||+|-+.+|........ ...++..+.+.++++.+|+.++ .++++.+|||||||||.||||
T Consensus 75 Ak~ia~vpQ~~~-~~~~~tV~d~V~~GR~p~~~~~~~~~~~D~~~v~~aL~~~~~~~l-a~r~~~~LSGGerQrv~iArA 152 (258)
T COG1120 75 AKKLAYVPQSPS-APFGLTVYELVLLGRYPHLGLFGRPSKEDEEIVEEALELLGLEHL-ADRPVDELSGGERQRVLIARA 152 (258)
T ss_pred hhhEEEeccCCC-CCCCcEEeehHhhcCCcccccccCCCHhHHHHHHHHHHHhCcHHH-hcCcccccChhHHHHHHHHHH
Confidence 788999999984 4568999999999843221111 1233445578899999999986 799999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEeccC
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQRI 243 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~~ 243 (245)
|+++|++|||||||++||..++.+++++++++++ +.|||+++||++.+.++||++++|++|++++.+.+
T Consensus 153 LaQ~~~iLLLDEPTs~LDi~~Q~evl~ll~~l~~~~~~tvv~vlHDlN~A~ryad~~i~lk~G~i~a~G~p 223 (258)
T COG1120 153 LAQETPILLLDEPTSHLDIAHQIEVLELLRDLNREKGLTVVMVLHDLNLAARYADHLILLKDGKIVAQGTP 223 (258)
T ss_pred HhcCCCEEEeCCCccccCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEeecCc
Confidence 9999999999999999999999999999999973 58999999999999999999999999999998764
|
|
| >COG1136 SalX ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-62 Score=406.49 Aligned_cols=218 Identities=32% Similarity=0.449 Sum_probs=186.7
Q ss_pred eEEEEeEEEECCCC--ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGT--QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 17 ~l~~~~l~~~y~~~--~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
|++++||++.|..+ ...+|+++||+|++||+++|+|||||||||||++|.|+.+|++|.|+++|+++...+.......
T Consensus 1 ~i~~~~v~k~y~~~~~~~~~L~~v~l~i~~Ge~vaI~GpSGSGKSTLLniig~ld~pt~G~v~i~g~d~~~l~~~~~~~~ 80 (226)
T COG1136 1 MIELKNVSKIYGLGGEKVEALKDVNLEIEAGEFVAIVGPSGSGKSTLLNLLGGLDKPTSGEVLINGKDLTKLSEKELAKL 80 (226)
T ss_pred CcEEeeeEEEeccCCcceEecccceEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEcCcCCHHHHHHH
Confidence 47899999998643 2469999999999999999999999999999999999999999999999999877654444455
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
++++||||||++. +++.+||.||+.++....... .....+++.++++.+||.+...+++|++||||||||||||||
T Consensus 81 R~~~iGfvFQ~~n-Ll~~ltv~ENv~lpl~~~~~~---~~~~~~~~~~l~~~lgl~~~~~~~~p~eLSGGqqQRVAIARA 156 (226)
T COG1136 81 RRKKIGFVFQNFN-LLPDLTVLENVELPLLIAGKS---AGRRKRAAEELLEVLGLEDRLLKKKPSELSGGQQQRVAIARA 156 (226)
T ss_pred HHHhEEEECccCC-CCCCCCHHHHHHhHHHHcCCC---hhHHHHHHHHHHHhcCChhhhccCCchhcCHHHHHHHHHHHH
Confidence 6788999999984 889999999999753221111 113455678899999998764448999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEE
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLV 239 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~ 239 (245)
|+.+|++||+||||++||.++.++++++|+++++ ++||||||||.+.+ .+|||++.|++|++..
T Consensus 157 L~~~P~iilADEPTgnLD~~t~~~V~~ll~~~~~~~g~tii~VTHd~~lA-~~~dr~i~l~dG~~~~ 222 (226)
T COG1136 157 LINNPKIILADEPTGNLDSKTAKEVLELLRELNKERGKTIIMVTHDPELA-KYADRVIELKDGKIEE 222 (226)
T ss_pred HhcCCCeEEeeCccccCChHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHH-HhCCEEEEEeCCeeee
Confidence 9999999999999999999999999999999964 58999999999865 6999999999999543
|
|
| >COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-62 Score=407.73 Aligned_cols=215 Identities=33% Similarity=0.450 Sum_probs=192.1
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
||+++||||.|++ +.+++|+||+|++||+++++|||||||||+||+|++|+.|++|+|+++|+++...+. ...|
T Consensus 1 MI~~~nvsk~y~~--~~av~~v~l~I~~gef~vliGpSGsGKTTtLkMINrLiept~G~I~i~g~~i~~~d~----~~LR 74 (309)
T COG1125 1 MIEFENVSKRYGN--KKAVDDVNLTIEEGEFLVLIGPSGSGKTTTLKMINRLIEPTSGEILIDGEDISDLDP----VELR 74 (309)
T ss_pred CceeeeeehhcCC--ceeeeeeeEEecCCeEEEEECCCCCcHHHHHHHHhcccCCCCceEEECCeecccCCH----HHHH
Confidence 6899999999974 579999999999999999999999999999999999999999999999999865432 2357
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC-ccCCCCCCCCChHHHHHHHHHHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG-TSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGqkqrv~iAral 175 (245)
++||||-|... +|+++||.||+++- +....+ .++..+++++++++.+||+. .+.+|+|++|||||+|||.+||||
T Consensus 75 r~IGYviQqig-LFPh~Tv~eNIa~V-P~L~~w--~k~~i~~r~~ELl~lvgL~p~~~~~RyP~eLSGGQQQRVGv~RAL 150 (309)
T COG1125 75 RKIGYVIQQIG-LFPHLTVAENIATV-PKLLGW--DKERIKKRADELLDLVGLDPSEYADRYPHELSGGQQQRVGVARAL 150 (309)
T ss_pred Hhhhhhhhhcc-cCCCccHHHHHHhh-hhhcCC--CHHHHHHHHHHHHHHhCCCHHHHhhcCchhcCcchhhHHHHHHHH
Confidence 89999999975 89999999999985 332221 24556778999999999975 357999999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+.+|++||+||||++|||.++.++.+.+.++++ ++|||+||||++++..++||+.+|++|+++-..
T Consensus 151 AadP~ilLMDEPFgALDpI~R~~lQ~e~~~lq~~l~kTivfVTHDidEA~kLadri~vm~~G~i~Q~~ 218 (309)
T COG1125 151 AADPPILLMDEPFGALDPITRKQLQEEIKELQKELGKTIVFVTHDIDEALKLADRIAVMDAGEIVQYD 218 (309)
T ss_pred hcCCCeEeecCCccccChhhHHHHHHHHHHHHHHhCCEEEEEecCHHHHHhhhceEEEecCCeEEEeC
Confidence 999999999999999999999999999999975 589999999999999999999999999997543
|
|
| >COG1127 Ttg2A ABC-type transport system involved in resistance to organic solvents, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-62 Score=403.14 Aligned_cols=224 Identities=31% Similarity=0.463 Sum_probs=198.1
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
..+.|++++|+++|++ +.+++|+||+|++||+++|+||||||||||||+|.|+++|++|+|+++|+++...+.... .
T Consensus 5 ~~~~I~vr~v~~~fG~--~~Ild~v~l~V~~Gei~~iiGgSGsGKStlLr~I~Gll~P~~GeI~i~G~~i~~ls~~~~-~ 81 (263)
T COG1127 5 PEPLIEVRGVTKSFGD--RVILDGVDLDVPRGEILAILGGSGSGKSTLLRLILGLLRPDKGEILIDGEDIPQLSEEEL-Y 81 (263)
T ss_pred CcceEEEeeeeeecCC--EEEecCceeeecCCcEEEEECCCCcCHHHHHHHHhccCCCCCCeEEEcCcchhccCHHHH-H
Confidence 3678999999999975 579999999999999999999999999999999999999999999999999876554322 2
Q ss_pred CCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
..++++|++||+. .+|..+||+||+.|.+..... ..++..++.+...|+.+||.....+++|.+|||||++|++|||
T Consensus 82 ~ir~r~GvlFQ~g-ALFssltV~eNVafplre~~~--lp~~~i~~lv~~KL~~VGL~~~~~~~~PsELSGGM~KRvaLAR 158 (263)
T COG1127 82 EIRKRMGVLFQQG-ALFSSLTVFENVAFPLREHTK--LPESLIRELVLMKLELVGLRGAAADLYPSELSGGMRKRVALAR 158 (263)
T ss_pred HHHhheeEEeecc-ccccccchhHhhheehHhhcc--CCHHHHHHHHHHHHHhcCCChhhhhhCchhhcchHHHHHHHHH
Confidence 3467899999997 488999999999997433222 2345566778888999999876479999999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEeccC
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQRI 243 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~~ 243 (245)
|++.+|+++++||||+||||.+...+-++|+++++ +.|+++||||++.+..+|||++++.+|++++++++
T Consensus 159 AialdPell~~DEPtsGLDPI~a~~~~~LI~~L~~~lg~T~i~VTHDl~s~~~i~Drv~~L~~gkv~~~Gt~ 230 (263)
T COG1127 159 AIALDPELLFLDEPTSGLDPISAGVIDELIRELNDALGLTVIMVTHDLDSLLTIADRVAVLADGKVIAEGTP 230 (263)
T ss_pred HHhcCCCEEEecCCCCCCCcchHHHHHHHHHHHHHhhCCEEEEEECChHHHHhhhceEEEEeCCEEEEeCCH
Confidence 99999999999999999999999999999999986 58999999999999999999999999999987653
|
|
| >COG2884 FtsE Predicted ATPase involved in cell division [Cell division and chromosome partitioning] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-61 Score=386.88 Aligned_cols=220 Identities=26% Similarity=0.446 Sum_probs=198.5
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
||+++||++.|+++ +++|+||||+|++||++.|+||||||||||+|+|++..+|++|+|+++|.++...+.... ...|
T Consensus 1 mI~f~~V~k~Y~~g-~~aL~~vs~~i~~Gef~fl~GpSGAGKSTllkLi~~~e~pt~G~i~~~~~dl~~l~~~~i-P~LR 78 (223)
T COG2884 1 MIRFENVSKAYPGG-REALRDVSFHIPKGEFVFLTGPSGAGKSTLLKLIYGEERPTRGKILVNGHDLSRLKGREI-PFLR 78 (223)
T ss_pred CeeehhhhhhcCCC-chhhhCceEeecCceEEEEECCCCCCHHHHHHHHHhhhcCCCceEEECCeeccccccccc-chhh
Confidence 68999999999876 679999999999999999999999999999999999999999999999999987654433 3568
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
++||+|||+.- ++...||+||++|++.-... ...+.++++.++|+++||.+. .+..|.+|||||||||+||||++
T Consensus 79 R~IGvVFQD~r-LL~~~tvyeNVA~pL~v~G~---~~~~i~~rV~~~L~~VgL~~k-~~~lP~~LSGGEQQRvaIARAiV 153 (223)
T COG2884 79 RQIGVVFQDFR-LLPDRTVYENVALPLRVIGK---PPREIRRRVSEVLDLVGLKHK-ARALPSQLSGGEQQRVAIARAIV 153 (223)
T ss_pred heeeeEeeecc-ccccchHhhhhhhhhhccCC---CHHHHHHHHHHHHHHhccchh-hhcCccccCchHHHHHHHHHHHc
Confidence 89999999984 77899999999997432221 245567789999999999986 79999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEeccC
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQRI 243 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~~ 243 (245)
.+|++||+||||.+|||....++++++.+++. +.||+|+|||.+.+..+-.|++.+++|+++.++.-
T Consensus 154 ~~P~vLlADEPTGNLDp~~s~~im~lfeeinr~GtTVl~ATHd~~lv~~~~~rvl~l~~Grl~~d~~~ 221 (223)
T COG2884 154 NQPAVLLADEPTGNLDPDLSWEIMRLFEEINRLGTTVLMATHDLELVNRMRHRVLALEDGRLVRDESR 221 (223)
T ss_pred cCCCeEeecCCCCCCChHHHHHHHHHHHHHhhcCcEEEEEeccHHHHHhccCcEEEEeCCEEEecccc
Confidence 99999999999999999999999999999975 79999999999999999999999999999987653
|
|
| >COG3638 ABC-type phosphate/phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-61 Score=396.90 Aligned_cols=225 Identities=27% Similarity=0.400 Sum_probs=195.9
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
+++|+++||++.|+++ +.+|+||||+|++||+++|+||||||||||||+|+|+.+|++|+|.++|.++......... .
T Consensus 1 ~~~i~~~nl~k~yp~~-~~aL~~Vnl~I~~GE~VaiIG~SGaGKSTLLR~lngl~d~t~G~i~~~g~~i~~~~~k~lr-~ 78 (258)
T COG3638 1 EMMIEVKNLSKTYPGG-HQALKDVNLEINQGEMVAIIGPSGAGKSTLLRSLNGLVDPTSGEILFNGVQITKLKGKELR-K 78 (258)
T ss_pred CceEEEeeeeeecCCC-ceeeeeEeEEeCCCcEEEEECCCCCcHHHHHHHHhcccCCCcceEEecccchhccchHHHH-H
Confidence 3689999999999753 6799999999999999999999999999999999999999999999999988665433222 2
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCch-----hHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSI-----QLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRL 169 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv 169 (245)
+|+++||+||++. +.+.++|++|++.|.......+ ...++.+..+.++|+++|+.+. +.++..+|||||+|||
T Consensus 79 ~r~~iGmIfQ~~n-Lv~r~sv~~NVl~grl~~~s~~~slfglfsk~dk~~Al~aLervgi~~~-A~qra~~LSGGQQQRV 156 (258)
T COG3638 79 LRRDIGMIFQQFN-LVPRLSVLENVLLGRLGYTSTWRSLFGLFSKEDKAQALDALERVGILDK-AYQRASTLSGGQQQRV 156 (258)
T ss_pred HHHhceeEeccCC-cccccHHHHHHHhhhcccchHHHHHhCCCCHHHHHHHHHHHHHcCcHHH-HHHHhccCCcchhHHH
Confidence 3678999999985 7789999999998743222111 1124455678899999999886 6889999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEeccC
Q 035832 170 ALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQRI 243 (245)
Q Consensus 170 ~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~~ 243 (245)
+|||||+++|+++|+|||+++|||.+.+.+++.|+++++ +.|+|+..|+++.+.+||||++-|++|+++.++++
T Consensus 157 aIARaL~Q~pkiILADEPvasLDp~~a~~Vm~~l~~in~~~g~Tvi~nLH~vdlA~~Y~~Riigl~~G~ivfDg~~ 232 (258)
T COG3638 157 AIARALVQQPKIILADEPVASLDPESAKKVMDILKDINQEDGITVIVNLHQVDLAKKYADRIIGLKAGRIVFDGPA 232 (258)
T ss_pred HHHHHHhcCCCEEecCCcccccChhhHHHHHHHHHHHHHHcCCEEEEEechHHHHHHHHhhheEecCCcEEEeCCh
Confidence 999999999999999999999999999999999999964 59999999999999999999999999999998754
|
|
| >COG3842 PotA ABC-type spermidine/putrescine transport systems, ATPase components [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-60 Score=421.52 Aligned_cols=214 Identities=36% Similarity=0.540 Sum_probs=193.1
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
.+.++++||+++|++ ..+++|+||+|++||+++|+||||||||||||+|+|+..|++|+|.++|+++...+.
T Consensus 3 ~~~l~i~~v~k~yg~--~~av~~isl~i~~Gef~~lLGPSGcGKTTlLR~IAGfe~p~~G~I~l~G~~i~~lpp------ 74 (352)
T COG3842 3 KPALEIRNVSKSFGD--FTAVDDISLDIKKGEFVTLLGPSGCGKTTLLRMIAGFEQPSSGEILLDGEDITDVPP------ 74 (352)
T ss_pred CceEEEEeeeeecCC--eeEEecceeeecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCh------
Confidence 457999999999973 579999999999999999999999999999999999999999999999999987543
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
.++.||+|||+. .+|+++||+||++||+.... ...+.+.++++.++++.++|+++ .+++|++|||||||||+||||
T Consensus 75 ~kR~ig~VFQ~Y-ALFPHltV~~NVafGLk~~~--~~~~~~i~~rv~e~L~lV~L~~~-~~R~p~qLSGGQqQRVALARA 150 (352)
T COG3842 75 EKRPIGMVFQSY-ALFPHMTVEENVAFGLKVRK--KLKKAEIKARVEEALELVGLEGF-ADRKPHQLSGGQQQRVALARA 150 (352)
T ss_pred hhcccceeecCc-ccCCCCcHHHHhhhhhhhcC--CCCHHHHHHHHHHHHHHcCchhh-hhhChhhhChHHHHHHHHHHH
Confidence 257899999998 48999999999999965211 11234566789999999999986 799999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEe
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~ 240 (245)
|+.+|++||||||+|+||..-++++...++++.+ +.|.|+||||.+++..++|||.+|++|+|.--
T Consensus 151 L~~~P~vLLLDEPlSaLD~kLR~~mr~Elk~lq~~~giT~i~VTHDqeEAl~msDrI~Vm~~G~I~Q~ 218 (352)
T COG3842 151 LVPEPKVLLLDEPLSALDAKLREQMRKELKELQRELGITFVYVTHDQEEALAMSDRIAVMNDGRIEQV 218 (352)
T ss_pred hhcCcchhhhcCcccchhHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHhhhccceEEccCCceeec
Confidence 9999999999999999999999999999999864 58999999999999999999999999998653
|
|
| >COG1121 ZnuC ABC-type Mn/Zn transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-59 Score=398.78 Aligned_cols=216 Identities=31% Similarity=0.457 Sum_probs=185.2
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
.++|+++|+++.|+++ ++|+||||++++|++++|+||||||||||+|+|+|+++|++|+|.++|++.....
T Consensus 2 ~~~i~v~nl~v~y~~~--~vl~~i~l~v~~G~~~~iiGPNGaGKSTLlK~iLGll~p~~G~i~~~g~~~~~~~------- 72 (254)
T COG1121 2 MPMIEVENLTVSYGNR--PVLEDISLSVEKGEITALIGPNGAGKSTLLKAILGLLKPSSGEIKIFGKPVRKRR------- 72 (254)
T ss_pred CcEEEEeeeEEEECCE--eeeeccEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCcceEEEccccccccc-------
Confidence 4679999999999753 6999999999999999999999999999999999999999999999998754321
Q ss_pred CCCcEEEEecCCCC-CCCcccHHHHHHhcCCCCCCch-hHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPER-YFVADNVLDEVIFGWPRQSGSI-QLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALA 172 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~-~~~~~tv~e~l~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iA 172 (245)
.+.+||||||.... .-++.||+|.+.++........ ...+...+.+.++|+.+|+.++ .++++++|||||+|||.||
T Consensus 73 ~~~~IgYVPQ~~~~d~~fP~tV~d~V~~g~~~~~g~~~~~~~~d~~~v~~aL~~Vgm~~~-~~r~i~~LSGGQ~QRV~lA 151 (254)
T COG1121 73 KRLRIGYVPQKSSVDRSFPITVKDVVLLGRYGKKGWFRRLNKKDKEKVDEALERVGMEDL-RDRQIGELSGGQKQRVLLA 151 (254)
T ss_pred cCCeEEEcCcccccCCCCCcCHHHHHHccCcccccccccccHHHHHHHHHHHHHcCchhh-hCCcccccCcHHHHHHHHH
Confidence 14689999996532 2347899999999843322211 1223345679999999999986 7999999999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 173 IQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 173 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|||+.+|++|+|||||+|+|+.++..|+++|.++++ ++||++||||++.+..+||+|+.|+ +++++.+
T Consensus 152 RAL~~~p~lllLDEP~~gvD~~~~~~i~~lL~~l~~eg~tIl~vtHDL~~v~~~~D~vi~Ln-~~~~~~G 220 (254)
T COG1121 152 RALAQNPDLLLLDEPFTGVDVAGQKEIYDLLKELRQEGKTVLMVTHDLGLVMAYFDRVICLN-RHLIASG 220 (254)
T ss_pred HHhccCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCcHHhHhhCCEEEEEc-CeeEecc
Confidence 999999999999999999999999999999999975 6999999999999999999999997 5666544
|
|
| >COG1122 CbiO ABC-type cobalt transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-59 Score=398.59 Aligned_cols=219 Identities=39% Similarity=0.595 Sum_probs=195.6
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
++++++|++++|+++ ..+|+++||+|++||+++|+||||||||||+++++|+++|++|.|.++|.++... ......
T Consensus 2 ~~i~~~~l~~~y~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTL~~~l~GLl~p~~G~v~~~g~~~~~~---~~~~~~ 77 (235)
T COG1122 2 RMIEAENLSFRYPGR-KAALKDVSLEIEKGERVLLIGPNGSGKSTLLKLLNGLLKPTSGEVLVDGLDTSSE---KSLLEL 77 (235)
T ss_pred ceEEEEEEEEEcCCC-ceeeeeeEEEECCCCEEEEECCCCCCHHHHHHHHcCcCcCCCCEEEECCeeccch---hhHHHh
Confidence 579999999999865 6799999999999999999999999999999999999999999999999876420 111234
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
++++|||||+|..+++..||.++++|+...... ..++...++.++++.+|+.++ ++++|++|||||||||+||.+|
T Consensus 78 ~~~vG~VfQnpd~q~~~~tV~~evafg~~n~g~---~~~e~~~rv~~~l~~vgl~~~-~~r~p~~LSGGqkqRvaIA~vL 153 (235)
T COG1122 78 RQKVGLVFQNPDDQLFGPTVEDEVAFGLENLGL---PREEIEERVAEALELVGLEEL-LDRPPFNLSGGQKQRVAIAGVL 153 (235)
T ss_pred hcceEEEEECcccccccCcHHHHHhhchhhcCC---CHHHHHHHHHHHHHHcCchhh-ccCCccccCCcceeeHHhhHHH
Confidence 788999999999899999999999998433222 133567789999999999986 7999999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
+++|++||||||||+||+.++++++++++++++ ++|+|++|||++++..+|||+++|++|+++.++.
T Consensus 154 a~~P~iliLDEPta~LD~~~~~~l~~~l~~L~~~~~~tii~~tHd~~~~~~~ad~v~vl~~G~i~~~g~ 222 (235)
T COG1122 154 AMGPEILLLDEPTAGLDPKGRRELLELLKKLKEEGGKTIIIVTHDLELVLEYADRVVVLDDGKILADGD 222 (235)
T ss_pred HcCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCCeEEEEeCcHHHHHhhCCEEEEEECCEEeecCC
Confidence 999999999999999999999999999999974 3799999999999999999999999999988764
|
|
| >COG3839 MalK ABC-type sugar transport systems, ATPase components [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-59 Score=411.93 Aligned_cols=212 Identities=32% Similarity=0.485 Sum_probs=191.2
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
.+|+++||+|.|++. . +++++||+|++||+++|+||||||||||||+|+||++|++|+|.++|++++..+..
T Consensus 2 ~~i~l~~v~K~yg~~-~-~l~~i~l~i~~Gef~vllGPSGcGKSTlLr~IAGLe~~~~G~I~i~g~~vt~l~P~------ 73 (338)
T COG3839 2 AELELKNVRKSFGSF-E-VLKDVNLDIEDGEFVVLLGPSGCGKSTLLRMIAGLEEPTSGEILIDGRDVTDLPPE------ 73 (338)
T ss_pred cEEEEeeeEEEcCCc-e-eeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCChh------
Confidence 579999999999752 2 89999999999999999999999999999999999999999999999999765432
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
.+.||||||++. +|+++||+||++|++..... .+.+.++++.++.+.++|+++ ++++|.+|||||||||+|||||
T Consensus 74 ~R~iamVFQ~yA-LyPhmtV~~Niaf~Lk~~~~---~k~ei~~rV~eva~~L~l~~l-L~r~P~~LSGGQrQRVAlaRAl 148 (338)
T COG3839 74 KRGIAMVFQNYA-LYPHMTVYENIAFGLKLRGV---PKAEIDKRVKEVAKLLGLEHL-LNRKPLQLSGGQRQRVALARAL 148 (338)
T ss_pred HCCEEEEeCCcc-ccCCCcHHHHhhhhhhhCCC---chHHHHHHHHHHHHHcCChhH-HhcCcccCChhhHHHHHHHHHH
Confidence 478999999984 88999999999998543221 245667889999999999986 7999999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEe
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~ 240 (245)
+.+|+++|||||+|+||+..+..+...|+++.+ +.|+|++|||..++..++||+.+|++|++..-
T Consensus 149 Vr~P~v~L~DEPlSnLDa~lR~~mr~ei~~lh~~l~~T~IYVTHDq~EAmtladri~Vm~~G~i~Q~ 215 (338)
T COG3839 149 VRKPKVFLLDEPLSNLDAKLRVLMRSEIKKLHERLGTTTIYVTHDQVEAMTLADRIVVMNDGRIQQV 215 (338)
T ss_pred hcCCCEEEecCchhHhhHHHHHHHHHHHHHHHHhcCCcEEEEcCCHHHHHhhCCEEEEEeCCeeeec
Confidence 999999999999999999999999999999975 48999999999999999999999999988543
|
|
| >COG1124 DppF ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-59 Score=388.11 Aligned_cols=219 Identities=36% Similarity=0.459 Sum_probs=188.5
Q ss_pred ceEEEEeEEEECCCCc--cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQ--VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~--~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
++|+++|+++.|+++. .+++++|||+|.+||++||+|+||||||||.|+|+|+.+|++|+|.++|+.+....+ ..
T Consensus 2 ~~l~v~nl~~~y~~~~~~~~~l~~VS~~i~~Ge~lgivGeSGsGKSTL~r~l~Gl~~p~~G~I~~~G~~~~~~~~---~~ 78 (252)
T COG1124 2 TLLSVRNLSIVYGGGKFAFHALNNVSLEIERGETLGIVGESGSGKSTLARLLAGLEKPSSGSILLDGKPLAPKKR---AK 78 (252)
T ss_pred ceEEEeceEEEecCCcchhhhhcceeEEecCCCEEEEEcCCCCCHHHHHHHHhcccCCCCceEEECCcccCcccc---ch
Confidence 5799999999997531 149999999999999999999999999999999999999999999999987654322 12
Q ss_pred CCCCcEEEEecCCCCCCC-cccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHH
Q 035832 94 LPPEKVGIVFQFPERYFV-ADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALA 172 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iA 172 (245)
.+++.|.+|||||..-++ ..||.+-+.-++... + . . ..++++.++++.+||.+.+++++|++|||||+||+|||
T Consensus 79 ~~~~~VQmVFQDp~~SLnP~~tv~~~l~Epl~~~-~-~--~-~~~~~i~~~L~~VgL~~~~l~R~P~eLSGGQ~QRiaIA 153 (252)
T COG1124 79 AFYRPVQMVFQDPYSSLNPRRTVGRILSEPLRPH-G-L--S-KSQQRIAELLDQVGLPPSFLDRRPHELSGGQRQRIAIA 153 (252)
T ss_pred hhccceeEEecCCccccCcchhHHHHHhhhhccC-C-c--c-HHHHHHHHHHHHcCCCHHHHhcCchhcChhHHHHHHHH
Confidence 456789999999975554 568888887664321 1 1 1 12334889999999998888999999999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 173 IQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 173 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
|||+.+|++||||||||+||...+.+++++|.++++ +.|+||||||+..+..+|||+++|++|+++....
T Consensus 154 RAL~~~PklLIlDEptSaLD~siQa~IlnlL~~l~~~~~lt~l~IsHdl~~v~~~cdRi~Vm~~G~ivE~~~ 225 (252)
T COG1124 154 RALIPEPKLLILDEPTSALDVSVQAQILNLLLELKKERGLTYLFISHDLALVEHMCDRIAVMDNGQIVEIGP 225 (252)
T ss_pred HHhccCCCEEEecCchhhhcHHHHHHHHHHHHHHHHhcCceEEEEeCcHHHHHHHhhheeeeeCCeEEEeec
Confidence 999999999999999999999999999999999975 4799999999999999999999999999987653
|
|
| >COG1118 CysA ABC-type sulfate/molybdate transport systems, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-59 Score=401.62 Aligned_cols=217 Identities=30% Similarity=0.476 Sum_probs=190.5
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
++|+++|+++.|+. ..+++||||+|+.||.+||+||||||||||||+|+||+.|++|.|.++|+.+.+... ...+
T Consensus 1 m~i~i~~~~~~~~~--~~a~~di~l~i~~Ge~vaLlGpSGaGKsTlLRiIAGLe~p~~G~I~~~~~~l~D~~~---~~~~ 75 (345)
T COG1118 1 MSIRINNVKKRFGA--FGALDDISLDIKSGELVALLGPSGAGKSTLLRIIAGLETPDAGRIRLNGRVLFDVSN---LAVR 75 (345)
T ss_pred Cceeehhhhhhccc--ccccccceeeecCCcEEEEECCCCCcHHHHHHHHhCcCCCCCceEEECCEeccchhc---cchh
Confidence 46999999999974 578999999999999999999999999999999999999999999999993332211 1123
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
.++||||||+.. +|+.+||.+|++||..... ....+...+.++.++|+.+.|+.. .+++|.+|||||||||+|||||
T Consensus 76 ~R~VGfvFQ~YA-LF~HmtVa~NIAFGl~~~~-~~p~~~~~r~rv~elL~lvqL~~l-a~ryP~QLSGGQrQRVALARAL 152 (345)
T COG1118 76 DRKVGFVFQHYA-LFPHMTVADNIAFGLKVRK-ERPSEAEIRARVEELLRLVQLEGL-ADRYPAQLSGGQRQRVALARAL 152 (345)
T ss_pred hcceeEEEechh-hcccchHHhhhhhcccccc-cCCChhhHHHHHHHHHHHhcccch-hhcCchhcChHHHHHHHHHHHh
Confidence 578999999985 8999999999999964431 122244567789999999999986 7999999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEe
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~ 240 (245)
+.+|++||||||+++||...+.++...|+++.+ +.|.++||||.+++.++||||++|++|+|..-
T Consensus 153 A~eP~vLLLDEPf~ALDa~vr~~lr~wLr~~~~~~~~ttvfVTHD~eea~~ladrvvvl~~G~Ieqv 219 (345)
T COG1118 153 AVEPKVLLLDEPFGALDAKVRKELRRWLRKLHDRLGVTTVFVTHDQEEALELADRVVVLNQGRIEQV 219 (345)
T ss_pred hcCCCeEeecCCchhhhHHHHHHHHHHHHHHHHhhCceEEEEeCCHHHHHhhcceEEEecCCeeeee
Confidence 999999999999999999999999999999964 58999999999999999999999999998653
|
|
| >TIGR02314 ABC_MetN D-methionine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-58 Score=407.66 Aligned_cols=220 Identities=25% Similarity=0.426 Sum_probs=188.2
Q ss_pred eEEEEeEEEECCCC--ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGT--QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 17 ~l~~~~l~~~y~~~--~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
||+++||+++|+++ ..++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++........ ..
T Consensus 1 mI~~~~lsk~y~~~~~~~~~L~~vsl~i~~Gei~gIiG~sGaGKSTLlr~I~gl~~p~~G~I~i~G~~i~~~~~~~l-~~ 79 (343)
T TIGR02314 1 MIKLSNITKVFHQGTKTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTSGSVIVDGQDLTTLSNSEL-TK 79 (343)
T ss_pred CEEEEEEEEEECCCCcceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH-HH
Confidence 58999999999632 2469999999999999999999999999999999999999999999999998854321110 11
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
.+++|||+||++. +++..||+||+.++.... .. ......+++.++++.+||.+. .++++.+|||||||||+||||
T Consensus 80 ~r~~Ig~v~Q~~~-l~~~~tv~eni~~~~~~~-~~--~~~~~~~~v~e~l~~vgL~~~-~~~~~~~LSgGqkQRV~IARA 154 (343)
T TIGR02314 80 ARRQIGMIFQHFN-LLSSRTVFGNVALPLELD-NT--PKDEIKRKVTELLALVGLGDK-HDSYPSNLSGGQKQRVAIARA 154 (343)
T ss_pred HhcCEEEEECCcc-ccccCcHHHHHHHHHHHc-CC--CHHHHHHHHHHHHHHcCCchh-hhCChhhCCHHHHHHHHHHHH
Confidence 2568999999984 677789999999863211 11 123345568899999999875 799999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
|+.+|++|||||||++||+.++..++++|+++++ +.|||++||+++.+.++||++++|++|+++..+.
T Consensus 155 L~~~P~iLLlDEPts~LD~~t~~~i~~lL~~l~~~~g~tiiliTH~~~~v~~~~d~v~vl~~G~iv~~g~ 224 (343)
T TIGR02314 155 LASNPKVLLCDEATSALDPATTQSILELLKEINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQGT 224 (343)
T ss_pred HHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 9999999999999999999999999999999964 5899999999999999999999999999987643
|
Members of this family are the ATP-binding protein of the D-methionine ABC transporter complex. Known members belong to the Proteobacteria. |
| >COG1117 PstB ABC-type phosphate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-58 Score=377.69 Aligned_cols=219 Identities=27% Similarity=0.421 Sum_probs=189.4
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-----cceEEEcCccCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPT-----SGSINIRGYNNDGEPNN 89 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~g~~~~~~~~~ 89 (245)
.+.++++||++.|+. +.+|+|||++|++++++||+||||||||||||+++.+.... +|+|.++|+++......
T Consensus 5 ~~~~~~~~l~~yYg~--~~aL~~i~l~i~~~~VTAlIGPSGcGKST~LR~lNRmndl~~~~r~~G~v~~~g~ni~~~~~d 82 (253)
T COG1117 5 IPAIEVRDLNLYYGD--KHALKDINLDIPKNKVTALIGPSGCGKSTLLRCLNRMNDLIPGARVEGEVLLDGKNIYDPKVD 82 (253)
T ss_pred cceeEecceeEEECc--hhhhccCceeccCCceEEEECCCCcCHHHHHHHHHhhcccCcCceEEEEEEECCeeccCCCCC
Confidence 456999999999974 57999999999999999999999999999999999998776 49999999999764322
Q ss_pred CCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCc---cCCCCCCCCChHHH
Q 035832 90 SPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGT---SLDKDPHSLSGGYK 166 (245)
Q Consensus 90 ~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqk 166 (245)
....|++||+|||.|. .| ++|++||+++|. +..+.. . +..++.+++.|+...|++. .+++.+..||||||
T Consensus 83 --~~~lRr~vGMVFQkPn-PF-p~SIydNVayG~-r~~g~~-~-~~ldeiVe~sLk~AaLWdEVKDrL~~sa~~LSGGQQ 155 (253)
T COG1117 83 --VVELRRRVGMVFQKPN-PF-PMSIYDNVAYGL-RLHGIK-D-KELDEIVESSLKKAALWDEVKDRLHKSALGLSGGQQ 155 (253)
T ss_pred --HHHHHHHheeeccCCC-CC-CchHHHHHHHhH-Hhhccc-h-HHHHHHHHHHHHHhHhHHHhHHHhhCCccCCChhHH
Confidence 2235789999999995 45 499999999983 322222 2 4566778888888777642 35788999999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 167 RRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 167 qrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
||++|||||+.+|++||||||||+|||.+..++.++|.+++++.|||+|||+|..+.+++|+.+++..|+++..+.
T Consensus 156 QRLcIARalAv~PeVlLmDEPtSALDPIsT~kIEeLi~eLk~~yTIviVTHnmqQAaRvSD~taFf~~G~LvE~g~ 231 (253)
T COG1117 156 QRLCIARALAVKPEVLLMDEPTSALDPISTLKIEELITELKKKYTIVIVTHNMQQAARVSDYTAFFYLGELVEFGP 231 (253)
T ss_pred HHHHHHHHHhcCCcEEEecCcccccCchhHHHHHHHHHHHHhccEEEEEeCCHHHHHHHhHhhhhhcccEEEEEcC
Confidence 9999999999999999999999999999999999999999988999999999999999999999999999998654
|
|
| >PRK11650 ugpC glycerol-3-phosphate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-56 Score=402.75 Aligned_cols=214 Identities=28% Similarity=0.432 Sum_probs=187.1
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
++|+++|++++|++ .+.+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++...+. .
T Consensus 2 ~~l~i~~l~~~~~~-~~~~l~~vsl~i~~Ge~~~llG~sGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~~------~ 74 (356)
T PRK11650 2 AGLKLQAVRKSYDG-KTQVIKGIDLDVADGEFIVLVGPSGCGKSTLLRMVAGLERITSGEIWIGGRVVNELEP------A 74 (356)
T ss_pred CEEEEEeEEEEeCC-CCEEEeeeeEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH------H
Confidence 36999999999932 2469999999999999999999999999999999999999999999999998854321 1
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
+++||||||++. +|+.+||+||+.++...... ...+...++.++++.++|++. +++++.+|||||||||+|||||
T Consensus 75 ~r~ig~v~Q~~~-lfp~~tv~eNi~~~~~~~~~---~~~~~~~~~~~~l~~~gL~~~-~~~~~~~LSgGq~QRvalARAL 149 (356)
T PRK11650 75 DRDIAMVFQNYA-LYPHMSVRENMAYGLKIRGM---PKAEIEERVAEAARILELEPL-LDRKPRELSGGQRQRVAMGRAI 149 (356)
T ss_pred HCCEEEEeCCcc-ccCCCCHHHHHHhHHhhcCC---CHHHHHHHHHHHHHHcCChhH-hhCChhhCCHHHHHHHHHHHHH
Confidence 367999999985 77889999999987432111 122334568899999999875 7999999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+.+|++|||||||++||+..++.+++.|+++.+ +.|+|+||||++++..+||++++|++|+++..+
T Consensus 150 ~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~l~D~i~vl~~G~i~~~g 217 (356)
T PRK11650 150 VREPAVFLFDEPLSNLDAKLRVQMRLEIQRLHRRLKTTSLYVTHDQVEAMTLADRVVVMNGGVAEQIG 217 (356)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEEC
Confidence 999999999999999999999999999999864 589999999999999999999999999998654
|
|
| >PRK11432 fbpC ferric transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-56 Score=400.94 Aligned_cols=214 Identities=29% Similarity=0.428 Sum_probs=188.6
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
.++|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++...+.
T Consensus 4 ~~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~------ 75 (351)
T PRK11432 4 KNFVVLKNITKRFGS--NTVIDNLNLTIKQGTMVTLLGPSGCGKTTVLRLVAGLEKPTEGQIFIDGEDVTHRSI------ 75 (351)
T ss_pred CcEEEEEeEEEEECC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHHCCCCCCceEEEECCEECCCCCH------
Confidence 457999999999964 568999999999999999999999999999999999999999999999998854321
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
.++++||+||++. +|+.+||+||+.|+...... ...+..+++.++++.+++.+. +++++.+|||||||||+||||
T Consensus 76 ~~r~ig~vfQ~~~-lfp~~tv~eNi~~~l~~~~~---~~~~~~~~v~~~l~~~gl~~~-~~r~~~~LSgGq~QRVaLARa 150 (351)
T PRK11432 76 QQRDICMVFQSYA-LFPHMSLGENVGYGLKMLGV---PKEERKQRVKEALELVDLAGF-EDRYVDQISGGQQQRVALARA 150 (351)
T ss_pred HHCCEEEEeCCcc-cCCCCCHHHHHHHHHhHcCC---CHHHHHHHHHHHHHHcCCchh-hcCChhhCCHHHHHHHHHHHH
Confidence 2467999999984 78889999999997421111 123345678899999999875 799999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|+.+|++|||||||++||+..++++.+.|+++.+ +.|+|++|||.+++..+||++++|++|+++..+
T Consensus 151 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~e~~~laD~i~vm~~G~i~~~g 219 (351)
T PRK11432 151 LILKPKVLLFDEPLSNLDANLRRSMREKIRELQQQFNITSLYVTHDQSEAFAVSDTVIVMNKGKIMQIG 219 (351)
T ss_pred HHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 9999999999999999999999999999999864 589999999999999999999999999998654
|
|
| >PRK13537 nodulation ABC transporter NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-56 Score=394.66 Aligned_cols=216 Identities=30% Similarity=0.396 Sum_probs=186.8
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
.++|+++||+++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.... ..
T Consensus 5 ~~~i~i~~l~k~~~~--~~~l~~vsl~i~~Gei~gllGpNGaGKSTLl~~l~Gl~~p~~G~v~i~G~~~~~~~-----~~ 77 (306)
T PRK13537 5 VAPIDFRNVEKRYGD--KLVVDGLSFHVQRGECFGLLGPNGAGKTTTLRMLLGLTHPDAGSISLCGEPVPSRA-----RH 77 (306)
T ss_pred CceEEEEeEEEEECC--eEEEecceEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEecccch-----HH
Confidence 458999999999974 56999999999999999999999999999999999999999999999999875321 12
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
.++++||+||++. +++.+|++||+.+..... .. .......++.++++.+++.+. .++++.+||||||||++||||
T Consensus 78 ~~~~ig~v~q~~~-~~~~~tv~e~l~~~~~~~-~~--~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrl~la~a 152 (306)
T PRK13537 78 ARQRVGVVPQFDN-LDPDFTVRENLLVFGRYF-GL--SAAAARALVPPLLEFAKLENK-ADAKVGELSGGMKRRLTLARA 152 (306)
T ss_pred HHhcEEEEeccCc-CCCCCcHHHHHHHHHHHc-CC--CHHHHHHHHHHHHHHcCCchH-hcCchhhCCHHHHHHHHHHHH
Confidence 3578999999985 667789999998632111 11 122234467889999999875 699999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
|+++|++|||||||+|||+.+++.++++|+++++ ++|||++||+++++..+|||+++|++|+++..+.
T Consensus 153 L~~~P~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~till~sH~l~e~~~~~d~i~il~~G~i~~~g~ 221 (306)
T PRK13537 153 LVNDPDVLVLDEPTTGLDPQARHLMWERLRSLLARGKTILLTTHFMEEAERLCDRLCVIEEGRKIAEGA 221 (306)
T ss_pred HhCCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999964 6899999999999999999999999999987653
|
|
| >TIGR03265 PhnT2 putative 2-aminoethylphosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-56 Score=400.01 Aligned_cols=214 Identities=32% Similarity=0.481 Sum_probs=188.4
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
.++|+++||+++|++ +.+|+|+||++++||+++|+||||||||||||+|+|+++|++|+|.++|+++...+.
T Consensus 2 ~~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~GpsGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~------ 73 (353)
T TIGR03265 2 SPYLSIDNIRKRFGA--FTALKDISLSVKKGEFVCLLGPSGCGKTTLLRIIAGLERQTAGTIYQGGRDITRLPP------ 73 (353)
T ss_pred CcEEEEEEEEEEeCC--eEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH------
Confidence 357999999999974 468999999999999999999999999999999999999999999999998754221
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
.++.+||+||++. +|+.+||+||+.|+...... ...+...++.++++.++|++. +++++.+|||||||||+||||
T Consensus 74 ~~r~ig~v~Q~~~-lfp~~tv~eNi~~~~~~~~~---~~~~~~~~~~~~l~~l~L~~~-~~~~~~~LSgGq~QRvaLARa 148 (353)
T TIGR03265 74 QKRDYGIVFQSYA-LFPNLTVADNIAYGLKNRGM---GRAEVAERVAELLDLVGLPGS-ERKYPGQLSGGQQQRVALARA 148 (353)
T ss_pred HHCCEEEEeCCcc-cCCCCcHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHcCCCch-hhCChhhCCHHHHHHHHHHHH
Confidence 2467999999984 78889999999987422111 123345578899999999985 799999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|+.+|+++||||||++||+..++++++.|+++.+ +.|+|++|||++++..+||++++|++|+++..+
T Consensus 149 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~~~tvi~vTHd~~ea~~l~d~i~vl~~G~i~~~g 217 (353)
T TIGR03265 149 LATSPGLLLLDEPLSALDARVREHLRTEIRQLQRRLGVTTIMVTHDQEEALSMADRIVVMNHGVIEQVG 217 (353)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 9999999999999999999999999999999864 589999999999999999999999999998654
|
This ABC transporter ATP-binding protein is found in a number of genomes in operon-like contexts strongly suggesting a substrate specificity for 2-aminoethylphosphonate (2-AEP). The characterized PhnSTUV system is absent in the genomes in which this system is found. These genomes encode systems for the catabolism of 2-AEP, making the need for a 2-AEP-specific transporter likely. |
| >TIGR00960 3a0501s02 Type II (General) Secretory Pathway (IISP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-57 Score=377.83 Aligned_cols=215 Identities=28% Similarity=0.482 Sum_probs=181.1
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
||+++|++++|+++.+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++....... ...++
T Consensus 1 ~l~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~-~~~~~ 79 (216)
T TIGR00960 1 MIRFEQVSKAYPGGHQPALDNLNFHITKGEMVFLVGHSGAGKSTFLKLILGIEKPTRGKIRFNGQDLTRLRGRE-IPFLR 79 (216)
T ss_pred CeEEEEEEEEecCCCeeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEehhhcChhH-HHHHH
Confidence 58999999999643246999999999999999999999999999999999999999999999998774321110 00124
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
++++|+||++. +++..|+.||+.++.... .. ......+++.++++.+++.+. .++++.+|||||||||+|||||+
T Consensus 80 ~~i~~~~q~~~-~~~~~tv~e~l~~~~~~~-~~--~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgG~~qrv~laral~ 154 (216)
T TIGR00960 80 RHIGMVFQDHR-LLSDRTVYDNVAFPLRII-GV--PPRDANERVSAALEKVGLEGK-AHALPMQLSGGEQQRVAIARAIV 154 (216)
T ss_pred HhceEEecCcc-ccccccHHHHHHHHHHhc-CC--CHHHHHHHHHHHHHHcCChhh-hhCChhhCCHHHHHHHHHHHHHh
Confidence 57999999984 666789999998752211 11 112234467889999999875 69999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeE
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGF 237 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i 237 (245)
.+|++|||||||+|||+.+++.+.++|+++++ +.|||++|||++++..+||++++|++|++
T Consensus 155 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i 216 (216)
T TIGR00960 155 HKPPLLLADEPTGNLDPELSRDIMRLFEEFNRRGTTVLVATHDINLVETYRHRTLTLSRGRL 216 (216)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 99999999999999999999999999999864 68999999999999999999999999974
|
|
| >PRK13536 nodulation factor exporter subunit NodI; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-56 Score=397.71 Aligned_cols=226 Identities=28% Similarity=0.396 Sum_probs=192.2
Q ss_pred cCCCCCccCCcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCC
Q 035832 5 KKRAGGISCDYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNND 84 (245)
Q Consensus 5 ~~~~~~~~~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~ 84 (245)
++++.+..++.++|+++||+++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.
T Consensus 29 ~~~~~~~~~~~~~i~i~nl~k~y~~--~~~l~~is~~i~~Gei~gLlGpNGaGKSTLl~~L~Gl~~p~~G~i~i~G~~~~ 106 (340)
T PRK13536 29 AKASIPGSMSTVAIDLAGVSKSYGD--KAVVNGLSFTVASGECFGLLGPNGAGKSTIARMILGMTSPDAGKITVLGVPVP 106 (340)
T ss_pred CchhhcccCCceeEEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCceEEEECCEECC
Confidence 4455555566778999999999974 46999999999999999999999999999999999999999999999999875
Q ss_pred CCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChH
Q 035832 85 GEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGG 164 (245)
Q Consensus 85 ~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG 164 (245)
... ...++.+||+||++. +++.+|+.||+.+..... .. ........+.++++.+++.+. .++++.+||||
T Consensus 107 ~~~-----~~~~~~ig~v~q~~~-~~~~~tv~e~l~~~~~~~-~~--~~~~~~~~~~~ll~~~~L~~~-~~~~~~~LS~G 176 (340)
T PRK13536 107 ARA-----RLARARIGVVPQFDN-LDLEFTVRENLLVFGRYF-GM--STREIEAVIPSLLEFARLESK-ADARVSDLSGG 176 (340)
T ss_pred cch-----HHHhccEEEEeCCcc-CCCCCcHHHHHHHHHHHc-CC--CHHHHHHHHHHHHHHcCCchh-hCCChhhCCHH
Confidence 321 123567999999984 567889999998631111 11 112233456788999999875 79999999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 165 YKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 165 qkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
||||++||+||+++|++|||||||+||||.++..++++|+++.+ +.|||++||+++++..+||+|++|++|+++..+.
T Consensus 177 ~kqrv~lA~aL~~~P~lLiLDEPt~gLD~~~r~~l~~~l~~l~~~g~tilisSH~l~e~~~~~d~i~il~~G~i~~~g~ 255 (340)
T PRK13536 177 MKRRLTLARALINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLEAGRKIAEGR 255 (340)
T ss_pred HHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 99999999999999999999999999999999999999999864 6899999999999999999999999999987653
|
|
| >COG1131 CcmA ABC-type multidrug transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-56 Score=392.05 Aligned_cols=215 Identities=36% Similarity=0.541 Sum_probs=187.9
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
.+++++||+++|++ .+.+|+||||+|++||++||+||||||||||+|+|+|+.+|++|+|.++|.+..... ...
T Consensus 3 ~~i~~~~l~k~~~~-~~~~l~~vs~~i~~Gei~gllG~NGAGKTTllk~l~gl~~p~~G~i~i~G~~~~~~~-----~~~ 76 (293)
T COG1131 3 EVIEVRNLTKKYGG-DKTALDGVSFEVEPGEIFGLLGPNGAGKTTLLKILAGLLKPTSGEILVLGYDVVKEP-----AKV 76 (293)
T ss_pred ceeeecceEEEeCC-CCEEEeceeEEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCceEEEEcCEeCccCH-----HHH
Confidence 35889999999973 257999999999999999999999999999999999999999999999998875321 123
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
++++||+||++. +++.+|++||+.|........ .....++++++++.++|.+. .++++.+||+|||||++||+||
T Consensus 77 ~~~igy~~~~~~-~~~~lT~~e~l~~~~~l~~~~---~~~~~~~~~~~l~~~~L~~~-~~~~~~~lS~G~kqrl~ia~aL 151 (293)
T COG1131 77 RRRIGYVPQEPS-LYPELTVRENLEFFARLYGLS---KEEAEERIEELLELFGLEDK-ANKKVRTLSGGMKQRLSIALAL 151 (293)
T ss_pred HhheEEEccCCC-CCccccHHHHHHHHHHHhCCC---hhHHHHHHHHHHHHcCCchh-hCcchhhcCHHHHHHHHHHHHH
Confidence 578999999996 778999999998852211111 12335578899999999974 5889999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-C-ceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-E-LTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~-~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+.+|+++||||||+||||.++.+++++|+++++ + .||+++||.++++..+||+|++|++|++++++
T Consensus 152 ~~~P~lliLDEPt~GLDp~~~~~~~~~l~~l~~~g~~tvlissH~l~e~~~~~d~v~il~~G~~~~~g 219 (293)
T COG1131 152 LHDPELLILDEPTSGLDPESRREIWELLRELAKEGGVTILLSTHILEEAEELCDRVIILNDGKIIAEG 219 (293)
T ss_pred hcCCCEEEECCCCcCCCHHHHHHHHHHHHHHHhCCCcEEEEeCCcHHHHHHhCCEEEEEeCCEEEEeC
Confidence 999999999999999999999999999999975 5 79999999999999999999999999999876
|
|
| >cd03261 ABC_Org_Solvent_Resistant ABC (ATP-binding cassette) transport system involved in resistant to organic solvents; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-56 Score=376.99 Aligned_cols=217 Identities=34% Similarity=0.479 Sum_probs=183.1
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+... ...+++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~~~-~~~~~~ 77 (235)
T cd03261 1 IELRGLTKSFGG--RTVLKGVDLDVRRGEILAIIGPSGSGKSTLLRLIVGLLRPDSGEVLIDGEDISGLSEAE-LYRLRR 77 (235)
T ss_pred CeEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccChhh-HHHHhc
Confidence 478999999964 46999999999999999999999999999999999999999999999998874321100 012356
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ 177 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~ 177 (245)
.++|+||++. +++..|+.||+.++....... .......++.++++.+++.+. .++++.+|||||||||+|||||+.
T Consensus 78 ~i~~v~q~~~-~~~~~tv~~~l~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgG~~qrv~ia~al~~ 153 (235)
T cd03261 78 RMGMLFQSGA-LFDSLTVFENVAFPLREHTRL--SEEEIREIVLEKLEAVGLRGA-EDLYPAELSGGMKKRVALARALAL 153 (235)
T ss_pred ceEEEccCcc-cCCCCcHHHHHHHHHhhccCC--CHHHHHHHHHHHHHHcCCchh-hcCChhhCCHHHHHHHHHHHHHhc
Confidence 7999999984 667789999998752211111 122334567888999999875 699999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+|++|||||||+|||+.+++.++++|+++.+ +.|||++|||++++..+||++++|++|+++..+
T Consensus 154 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsH~~~~~~~~~d~v~~l~~G~i~~~g 219 (235)
T cd03261 154 DPELLLYDEPTAGLDPIASGVIDDLIRSLKKELGLTSIMVTHDLDTAFAIADRIAVLYDGKIVAEG 219 (235)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhcCEEEEEECCeEEEec
Confidence 9999999999999999999999999999864 689999999999999999999999999998654
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09452 potA putrescine/spermidine ABC transporter ATPase protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-55 Score=398.60 Aligned_cols=215 Identities=31% Similarity=0.484 Sum_probs=188.3
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
..++|+++|++++|++ +++|+++||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...+.
T Consensus 11 ~~~~L~l~~l~~~~~~--~~~l~~vsl~i~~Ge~~~LlGpsGsGKSTLLr~IaGl~~p~~G~I~~~g~~i~~~~~----- 83 (375)
T PRK09452 11 LSPLVELRGISKSFDG--KEVISNLDLTINNGEFLTLLGPSGCGKTTVLRLIAGFETPDSGRIMLDGQDITHVPA----- 83 (375)
T ss_pred CCceEEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH-----
Confidence 3457999999999964 468999999999999999999999999999999999999999999999998754221
Q ss_pred CCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
.++.+||+||++. +|+.+||+||+.|+.... .. ......+++.++++.++|.+. ++++|.+|||||||||+|||
T Consensus 84 -~~r~ig~vfQ~~~-lfp~ltv~eNi~~~l~~~-~~--~~~~~~~~~~~~l~~~~l~~~-~~~~p~~LSgGq~QRVaLAR 157 (375)
T PRK09452 84 -ENRHVNTVFQSYA-LFPHMTVFENVAFGLRMQ-KT--PAAEITPRVMEALRMVQLEEF-AQRKPHQLSGGQQQRVAIAR 157 (375)
T ss_pred -HHCCEEEEecCcc-cCCCCCHHHHHHHHHhhc-CC--CHHHHHHHHHHHHHHcCCchh-hhCChhhCCHHHHHHHHHHH
Confidence 2467999999984 788999999999874211 11 122334567889999999875 79999999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||+.+|++|||||||++||+..++.+++.|+++.+ +.|+|+||||.+++..+||++++|++|+++..+
T Consensus 158 aL~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tiI~vTHd~~ea~~laDri~vl~~G~i~~~g 227 (375)
T PRK09452 158 AVVNKPKVLLLDESLSALDYKLRKQMQNELKALQRKLGITFVFVTHDQEEALTMSDRIVVMRDGRIEQDG 227 (375)
T ss_pred HHhcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 99999999999999999999999999999999864 589999999999999999999999999998654
|
|
| >cd03259 ABC_Carb_Solutes_like ABC Carbohydrate and Solute Transporters-like subgroup | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-55 Score=370.87 Aligned_cols=210 Identities=38% Similarity=0.582 Sum_probs=180.9
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+ ..++
T Consensus 1 l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~------~~~~ 72 (213)
T cd03259 1 LELKGLSKTYGS--VRALDDLSLTVEPGEFLALLGPSGCGKTTLLRLIAGLERPDSGEILIDGRDVTGVP------PERR 72 (213)
T ss_pred CeeeeeEEEeCC--eeeecceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcCcCc------hhhc
Confidence 478999999964 56999999999999999999999999999999999999999999999998874321 1245
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ 177 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~ 177 (245)
+++|+||++. +++..|+++|+.++.... .. ........+.++++.+++.+. .++++.+||||||||++|||||+.
T Consensus 73 ~i~~v~q~~~-~~~~~tv~~~l~~~~~~~-~~--~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgG~~qrl~la~al~~ 147 (213)
T cd03259 73 NIGMVFQDYA-LFPHLTVAENIAFGLKLR-GV--PKAEIRARVRELLELVGLEGL-LNRYPHELSGGQQQRVALARALAR 147 (213)
T ss_pred cEEEEcCchh-hccCCcHHHHHHhHHHHc-CC--CHHHHHHHHHHHHHHcCChhh-hhcChhhCCHHHHHHHHHHHHHhc
Confidence 7999999985 666789999998752111 10 112234457889999999875 699999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEe
Q 035832 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~ 240 (245)
+|++|||||||+|||+.+++.++++|+++.+ +.|||++|||++++..+||++++|++|+++..
T Consensus 148 ~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~ 212 (213)
T cd03259 148 EPSLLLLDEPLSALDAKLREELREELKELQRELGITTIYVTHDQEEALALADRIAVMNEGRIVQV 212 (213)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhcCEEEEEECCEEEec
Confidence 9999999999999999999999999999853 68999999999999999999999999998754
|
This family is comprised of proteins involved in the transport of apparently unrelated solutes and proteins specific for di- and oligosaccharides and polyols. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10851 sulfate/thiosulfate transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-55 Score=395.24 Aligned_cols=216 Identities=31% Similarity=0.477 Sum_probs=187.2
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
++|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++.... ..
T Consensus 1 ~~L~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~------~~ 72 (353)
T PRK10851 1 MSIEIANIKKSFGR--TQVLNDISLDIPSGQMVALLGPSGSGKTTLLRIIAGLEHQTSGHIRFHGTDVSRLH------AR 72 (353)
T ss_pred CEEEEEEEEEEeCC--eEEEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCC------HH
Confidence 35999999999974 46999999999999999999999999999999999999999999999999875321 12
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCC-chhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSG-SIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
++++||+||++. +|+.+||.||+.++...... ......+..+++.++++.++|++. +++++.+|||||||||+||||
T Consensus 73 ~r~i~~v~Q~~~-l~p~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~-~~~~~~~LSgGq~QRvalArA 150 (353)
T PRK10851 73 DRKVGFVFQHYA-LFRHMTVFDNIAFGLTVLPRRERPNAAAIKAKVTQLLEMVQLAHL-ADRYPAQLSGGQKQRVALARA 150 (353)
T ss_pred HCCEEEEecCcc-cCCCCcHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHHcCCchh-hhCChhhCCHHHHHHHHHHHH
Confidence 467999999984 77889999999987432100 001123345578899999999875 799999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|+.+|++|||||||++||+.+++.+++.|+++.+ +.|+|++|||++++..+||++++|++|+++..+
T Consensus 151 L~~~P~llLLDEP~s~LD~~~r~~l~~~L~~l~~~~g~tii~vTHd~~ea~~~~Dri~vl~~G~i~~~g 219 (353)
T PRK10851 151 LAVEPQILLLDEPFGALDAQVRKELRRWLRQLHEELKFTSVFVTHDQEEAMEVADRVVVMSQGNIEQAG 219 (353)
T ss_pred HhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 9999999999999999999999999999999864 589999999999999999999999999998654
|
|
| >COG4555 NatA ABC-type Na+ transport system, ATPase component [Energy production and conversion / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-57 Score=366.91 Aligned_cols=217 Identities=28% Similarity=0.444 Sum_probs=190.8
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
||++.+++++|+. ...+++||||+++.||+++|+|||||||||+||+|++++.|++|.|+++|.|....+. ..+
T Consensus 1 Ml~v~~l~K~y~~-~v~AvrdVSF~ae~Gei~GlLG~NGAGKTT~LRmiatlL~P~~G~v~idg~d~~~~p~-----~vr 74 (245)
T COG4555 1 MLEVTDLTKSYGS-KVQAVRDVSFEAEEGEITGLLGENGAGKTTLLRMIATLLIPDSGKVTIDGVDTVRDPS-----FVR 74 (245)
T ss_pred CeeeeehhhhccC-HHhhhhheeEEeccceEEEEEcCCCCCchhHHHHHHHhccCCCceEEEeecccccChH-----HHh
Confidence 6899999999976 3459999999999999999999999999999999999999999999999998754332 347
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
++||.+|..- .++..+|++||+.|..... . ..+.+.+.++.++.+.++|.+. +++++.++|.||||||+|||||+
T Consensus 75 r~IGVl~~e~-glY~RlT~rEnl~~Fa~L~-~--l~~~~~kari~~l~k~l~l~~~-~~rRv~~~S~G~kqkV~iARAlv 149 (245)
T COG4555 75 RKIGVLFGER-GLYARLTARENLKYFARLN-G--LSRKEIKARIAELSKRLQLLEY-LDRRVGEFSTGMKQKVAIARALV 149 (245)
T ss_pred hhcceecCCc-ChhhhhhHHHHHHHHHHHh-h--hhhhHHHHHHHHHHHHhChHHH-HHHHHhhhchhhHHHHHHHHHHh
Confidence 8899999554 4667899999998742111 1 1234556778899999999986 79999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEeccCC
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQRIP 244 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~~~ 244 (245)
++|++++|||||||||..++..+.+.++++++ +.+||++||+|++++.+||+|++|++|+++.+++++
T Consensus 150 h~P~i~vlDEP~sGLDi~~~r~~~dfi~q~k~egr~viFSSH~m~EvealCDrvivlh~Gevv~~gs~~ 218 (245)
T COG4555 150 HDPSILVLDEPTSGLDIRTRRKFHDFIKQLKNEGRAVIFSSHIMQEVEALCDRVIVLHKGEVVLEGSIE 218 (245)
T ss_pred cCCCeEEEcCCCCCccHHHHHHHHHHHHHhhcCCcEEEEecccHHHHHHhhheEEEEecCcEEEcCCHH
Confidence 99999999999999999999999999999986 799999999999999999999999999999987653
|
|
| >PRK11629 lolD lipoprotein transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-55 Score=374.26 Aligned_cols=224 Identities=30% Similarity=0.447 Sum_probs=185.0
Q ss_pred CcceEEEEeEEEECCCCc--cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQ--VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSP 91 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~--~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 91 (245)
+.++|+++|++++|+++. +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...+....
T Consensus 2 ~~~~l~~~~l~~~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~~~~ 81 (233)
T PRK11629 2 NKILLQCDNLCKRYQEGSVQTDVLHNVSFSIGEGEMMAIVGSSGSGKSTLLHLLGGLDTPTSGDVIFNGQPMSKLSSAAK 81 (233)
T ss_pred CCceEEEEeEEEEcCCCCcceeeEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCHHHH
Confidence 346899999999996422 469999999999999999999999999999999999999999999999988754321100
Q ss_pred CCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHH
Q 035832 92 EPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLAL 171 (245)
Q Consensus 92 ~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~i 171 (245)
...+++.++|+||++. +++..|+.+|+.++...... ......+++.++++.+|+.+. .++++.+||||||||++|
T Consensus 82 ~~~~~~~i~~v~q~~~-~~~~~tv~e~l~~~~~~~~~---~~~~~~~~~~~~l~~~gl~~~-~~~~~~~LSgG~~qrl~l 156 (233)
T PRK11629 82 AELRNQKLGFIYQFHH-LLPDFTALENVAMPLLIGKK---KPAEINSRALEMLAAVGLEHR-ANHRPSELSGGERQRVAI 156 (233)
T ss_pred HHHHhccEEEEecCcc-cCCCCCHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHcCCchh-hhCChhhCCHHHHHHHHH
Confidence 0011257999999984 66678999999875211111 112234567889999999875 689999999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEeccC
Q 035832 172 AIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQRI 243 (245)
Q Consensus 172 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~~ 243 (245)
||||+.+|++|||||||+|||+.+++.++++|+++++ +.|||++|||++++..+ |++++|++|+++.....
T Consensus 157 a~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~sH~~~~~~~~-~~~~~l~~G~i~~~~~~ 229 (233)
T PRK11629 157 ARALVNNPRLVLADEPTGNLDARNADSIFQLLGELNRLQGTAFLVVTHDLQLAKRM-SRQLEMRDGRLTAELSL 229 (233)
T ss_pred HHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhh-CEEEEEECCEEEEEecc
Confidence 9999999999999999999999999999999999853 68999999999998764 79999999999877654
|
|
| >PRK11607 potG putrescine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-55 Score=396.37 Aligned_cols=218 Identities=28% Similarity=0.439 Sum_probs=189.8
Q ss_pred cCCcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCC
Q 035832 12 SCDYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSP 91 (245)
Q Consensus 12 ~~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 91 (245)
....++|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++...+
T Consensus 14 ~~~~~~l~l~~v~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~IaGl~~p~~G~I~i~g~~i~~~~---- 87 (377)
T PRK11607 14 KALTPLLEIRNLTKSFDG--QHAVDDVSLTIYKGEIFALLGASGCGKSTLLRMLAGFEQPTAGQIMLDGVDLSHVP---- 87 (377)
T ss_pred ccCCceEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCC----
Confidence 344668999999999964 46899999999999999999999999999999999999999999999999875422
Q ss_pred CCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHH
Q 035832 92 EPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLAL 171 (245)
Q Consensus 92 ~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~i 171 (245)
..++.+||+||++. +|+.+||.||+.++...... ...+..+++.++++.+++.+. .++++.+|||||||||+|
T Consensus 88 --~~~r~ig~vfQ~~~-lfp~ltv~eNi~~~l~~~~~---~~~~~~~~v~~~l~~l~L~~~-~~~~~~~LSgGq~QRVaL 160 (377)
T PRK11607 88 --PYQRPINMMFQSYA-LFPHMTVEQNIAFGLKQDKL---PKAEIASRVNEMLGLVHMQEF-AKRKPHQLSGGQRQRVAL 160 (377)
T ss_pred --HHHCCEEEEeCCCc-cCCCCCHHHHHHHHHHHcCC---CHHHHHHHHHHHHHHcCCchh-hcCChhhCCHHHHHHHHH
Confidence 12467999999985 78899999999987422111 123345578899999999875 799999999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 172 AIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 172 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
||||+.+|++|||||||++||+..++.+.+.|+++.+ +.|+|++|||.+++..+||++++|++|+++..+.
T Consensus 161 ARAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tii~vTHd~~ea~~laDri~vl~~G~i~~~g~ 233 (377)
T PRK11607 161 ARSLAKRPKLLLLDEPMGALDKKLRDRMQLEVVDILERVGVTCVMVTHDQEEAMTMAGRIAIMNRGKFVQIGE 233 (377)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEeCCEEEEEcC
Confidence 9999999999999999999999999999999998753 5899999999999999999999999999986543
|
|
| >cd03255 ABC_MJ0796_Lo1CDE_FtsE This family is comprised of MJ0796 ATP-binding cassette, macrolide-specific ABC-type efflux carrier (MacAB), and proteins involved in cell division (FtsE), and release of liporoteins from the cytoplasmic membrane (LolCDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-56 Score=373.44 Aligned_cols=214 Identities=32% Similarity=0.482 Sum_probs=178.5
Q ss_pred EEEEeEEEECCCCc--cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQ--VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 18 l~~~~l~~~y~~~~--~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
|+++|++++|++.. +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.......+
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~~s~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~~~~~~ 80 (218)
T cd03255 1 IELKNLSKTYGGGGEKVQALKGVSLSIEKGEFVAIVGPSGSGKSTLLNILGGLDRPTSGEVRVDGTDISKLSEKELAAFR 80 (218)
T ss_pred CeEeeeEEEecCCCcceeEEeeeEEEEcCCCEEEEEcCCCCCHHHHHHHHhCCcCCCceeEEECCEehhhcchhHHHHHH
Confidence 57899999996421 4699999999999999999999999999999999999999999999999876432211000112
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
++.++|+||++. +++..|+.||+.++.... .. ......+.+.++++.+|+.+. +++++.+|||||||||+|||||
T Consensus 81 ~~~i~~~~q~~~-~~~~~tv~e~l~~~~~~~-~~--~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrv~la~al 155 (218)
T cd03255 81 RRHIGFVFQSFN-LLPDLTALENVELPLLLA-GV--PKKERRERAEELLERVGLGDR-LNHYPSELSGGQQQRVAIARAL 155 (218)
T ss_pred hhcEEEEeeccc-cCCCCcHHHHHHHHHhhc-CC--CHHHHHHHHHHHHHHcCCchh-hhcChhhcCHHHHHHHHHHHHH
Confidence 457999999985 566789999998853211 11 112234467889999999875 6999999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeE
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGF 237 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i 237 (245)
+.+|++|||||||+|||+.+++.+.++|+++.+ +.|||++||+++++. +||++++|++|++
T Consensus 156 ~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~v~~l~~G~i 218 (218)
T cd03255 156 ANDPKIILADEPTGNLDSETGKEVMELLRELNKEAGTTIVVVTHDPELAE-YADRIIELRDGKI 218 (218)
T ss_pred ccCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEECCHHHHh-hhcEEEEeeCCcC
Confidence 999999999999999999999999999999864 689999999999987 9999999999974
|
They are clustered together phylogenetically. MacAB is an exporter that confers resistance to macrolides, while the LolCDE system is not a transporter at all. An FtsE null mutants showed filamentous growth and appeared viable on high salt medium only, indicating a role for FtsE in cell division and/or salt transport. The LolCDE complex catalyses the release of lipoproteins from the cytoplasmic membrane prior to their targeting to the outer membrane. |
| >PRK13643 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-55 Score=385.74 Aligned_cols=223 Identities=31% Similarity=0.501 Sum_probs=185.6
Q ss_pred eEEEEeEEEECCCCc---cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQ---VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
||+++|++++|+++. +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++..........
T Consensus 1 mi~~~~v~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 80 (288)
T PRK13643 1 MIKFEKVNYTYQPNSPFASRALFDIDLEVKKGSYTALIGHTGSGKSTLLQHLNGLLQPTEGKVTVGDIVVSSTSKQKEIK 80 (288)
T ss_pred CEEEEEEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEECccccccccHH
Confidence 589999999996321 25999999999999999999999999999999999999999999999999874311111111
Q ss_pred CCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
.+++.+||+||+|...++..|+.+|+.|+.... .. ...+...++.++++.++|.+...++++.+||||||||++|||
T Consensus 81 ~~~~~ig~v~q~~~~~l~~~tv~~~l~~~~~~~-~~--~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgGqkqrvaiA~ 157 (288)
T PRK13643 81 PVRKKVGVVFQFPESQLFEETVLKDVAFGPQNF-GI--PKEKAEKIAAEKLEMVGLADEFWEKSPFELSGGQMRRVAIAG 157 (288)
T ss_pred HHHhhEEEEecCcchhcccchHHHHHHhHHHHc-CC--CHHHHHHHHHHHHHHcCCChhhccCCcccCCHHHHHHHHHHH
Confidence 235679999999853455679999999863211 11 122344567889999999632368999999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
||+.+|++|||||||+|||+.++..+.++|+++++ +.|||++|||++++..+|||+++|++|+++..+.
T Consensus 158 aL~~~p~illLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~vtHd~~~~~~~~dri~~l~~G~i~~~g~ 227 (288)
T PRK13643 158 ILAMEPEVLVLDEPTAGLDPKARIEMMQLFESIHQSGQTVVLVTHLMDDVADYADYVYLLEKGHIISCGT 227 (288)
T ss_pred HHHhCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999864 6899999999999999999999999999987653
|
|
| >TIGR03258 PhnT 2-aminoethylphosphonate ABC transport system, ATP-binding component PhnT | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-55 Score=395.48 Aligned_cols=212 Identities=31% Similarity=0.459 Sum_probs=186.4
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCc--ceEEEcCccCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTS--GSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~--G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
|+++||+++|++ ..+|+|+||+|++||+++|+||||||||||||+|+|+++|++ |+|.++|+++...+. .
T Consensus 6 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~~~G~i~~~g~~~~~~~~------~ 77 (362)
T TIGR03258 6 IRIDHLRVAYGA--NTVLDDLSLEIEAGELLALIGKSGCGKTTLLRAIAGFVKAAGLTGRIAIADRDLTHAPP------H 77 (362)
T ss_pred EEEEEEEEEECC--eEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCEEEEECCEECCCCCH------H
Confidence 899999999974 469999999999999999999999999999999999999999 999999998753221 2
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
++.+||+||++. +|+.+||+||+.|+...... .......++.++++.++|++. +++++.+|||||||||+|||||
T Consensus 78 ~r~ig~vfQ~~~-l~p~~tv~enl~~~l~~~~~---~~~~~~~~v~~~l~~~gL~~~-~~~~~~~LSgGq~QRvaLARAL 152 (362)
T TIGR03258 78 KRGLALLFQNYA-LFPHLKVEDNVAFGLRAQKM---PKADIAERVADALKLVGLGDA-AAHLPAQLSGGMQQRIAIARAI 152 (362)
T ss_pred HCCEEEEECCcc-cCCCCcHHHHHHHHHHHcCC---CHHHHHHHHHHHHHhcCCCch-hhCChhhCCHHHHHHHHHHHHH
Confidence 467999999985 77889999999987421111 123344568899999999975 7999999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc---CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLKK---ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~---~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
+.+|++|||||||++||+..++++++.|+++.+ +.|+|++|||++++..+||++++|++|+++..+.
T Consensus 153 ~~~P~llLLDEP~s~LD~~~r~~l~~~l~~l~~~~~g~til~vTHd~~ea~~l~dri~vl~~G~i~~~g~ 222 (362)
T TIGR03258 153 AIEPDVLLLDEPLSALDANIRANMREEIAALHEELPELTILCVTHDQDDALTLADKAGIMKDGRLAAHGE 222 (362)
T ss_pred hcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 999999999999999999999999999999864 5799999999999999999999999999987643
|
This ATP-binding component of an ABC transport system is found in Salmonella and Burkholderia lineages in the vicinity of enzymes for the breakdown of 2-aminoethylphosphonate. |
| >PRK13634 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-55 Score=385.18 Aligned_cols=222 Identities=35% Similarity=0.507 Sum_probs=184.4
Q ss_pred eEEEEeEEEECCCC---ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGT---QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 17 ~l~~~~l~~~y~~~---~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
.|+++|++++|++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..........
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (290)
T PRK13634 2 DITFQKVEHRYQYKTPFERRALYDVNVSIPSGSYVAIIGHTGSGKSTLLQHLNGLLQPTSGTVTIGERVITAGKKNKKLK 81 (290)
T ss_pred EEEEEEEEEEECCCCcccccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 48999999999642 146999999999999999999999999999999999999999999999999874311110111
Q ss_pred CCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
.+++++||+||++...++..||.||+.++.... .. ......+++.++++.++|....+++++.+|||||||||+|||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~eni~~~~~~~-~~--~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lAr 158 (290)
T PRK13634 82 PLRKKVGIVFQFPEHQLFEETVEKDICFGPMNF-GV--SEEDAKQKAREMIELVGLPEELLARSPFELSGGQMRRVAIAG 158 (290)
T ss_pred HHHhhEEEEeeCchhhhhhhhHHHHHHHHHHHc-CC--CHHHHHHHHHHHHHHCCCChhhhhCCcccCCHHHHHHHHHHH
Confidence 234679999999753455679999998862211 11 122233467889999999733368999999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||+.+|++|||||||+|||+.++..++++|+++.+ +.|||++|||++++..+|||+++|++|+++..+
T Consensus 159 aL~~~P~llllDEPt~~LD~~~~~~l~~~L~~l~~~~g~tviiitHd~~~~~~~~drv~~l~~G~i~~~g 228 (290)
T PRK13634 159 VLAMEPEVLVLDEPTAGLDPKGRKEMMEMFYKLHKEKGLTTVLVTHSMEDAARYADQIVVMHKGTVFLQG 228 (290)
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999863 689999999999999999999999999998764
|
|
| >PRK11153 metN DL-methionine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-55 Score=394.08 Aligned_cols=219 Identities=27% Similarity=0.468 Sum_probs=185.8
Q ss_pred eEEEEeEEEECCC--CccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPG--TQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 17 ~l~~~~l~~~y~~--~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
||+++|++++|++ ..+++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+.... ..
T Consensus 1 mi~i~~l~~~y~~~~~~~~il~~vsl~i~~Gei~~iiG~nGsGKSTLlk~L~Gl~~p~~G~I~~~g~~i~~~~~~~~-~~ 79 (343)
T PRK11153 1 MIELKNISKVFPQGGRTIHALNNVSLHIPAGEIFGVIGASGAGKSTLIRCINLLERPTSGRVLVDGQDLTALSEKEL-RK 79 (343)
T ss_pred CEEEEeEEEEeCCCCCceEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHH-HH
Confidence 5899999999962 13579999999999999999999999999999999999999999999999998754321100 11
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
.++++||+||++. +++..|+.||+.++.... .. ......+++.++++.+|+.+. .++++.+|||||||||+||||
T Consensus 80 ~~~~ig~v~q~~~-l~~~~tv~eni~~~~~~~-~~--~~~~~~~~~~~~l~~~gL~~~-~~~~~~~LSgGq~qRv~lAra 154 (343)
T PRK11153 80 ARRQIGMIFQHFN-LLSSRTVFDNVALPLELA-GT--PKAEIKARVTELLELVGLSDK-ADRYPAQLSGGQKQRVAIARA 154 (343)
T ss_pred HhcCEEEEeCCCc-cCCCCcHHHHHHHHHHHc-CC--CHHHHHHHHHHHHHHcCCchh-hhCChhhCCHHHHHHHHHHHH
Confidence 2467999999985 667789999998862211 11 122334567889999999875 699999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|+.+|++|||||||+|||+.++..++++|+++.+ +.|||++|||++++..+||++++|++|+++..+
T Consensus 155 L~~~p~iLlLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiilvtH~~~~i~~~~d~v~~l~~G~i~~~g 223 (343)
T PRK11153 155 LASNPKVLLCDEATSALDPATTRSILELLKDINRELGLTIVLITHEMDVVKRICDRVAVIDAGRLVEQG 223 (343)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 9999999999999999999999999999999863 689999999999999999999999999998754
|
|
| >PRK13637 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-55 Score=382.90 Aligned_cols=219 Identities=36% Similarity=0.552 Sum_probs=185.2
Q ss_pred eEEEEeEEEECCCC---ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGT---QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 17 ~l~~~~l~~~y~~~---~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
+|+++||++.|++. .+++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..... ...
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~--~~~ 79 (287)
T PRK13637 2 SIKIENLTHIYMEGTPFEKKALDNVNIEIEDGEFVGLIGHTGSGKSTLIQHLNGLLKPTSGKIIIDGVDITDKKV--KLS 79 (287)
T ss_pred EEEEEEEEEECCCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCccEEEECCEECCCcCc--cHH
Confidence 48999999999642 1369999999999999999999999999999999999999999999999998754211 001
Q ss_pred CCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCC--CccCCCCCCCCChHHHHHHHH
Q 035832 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLD--GTSLDKDPHSLSGGYKRRLAL 171 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~~LSgGqkqrv~i 171 (245)
.+++++||+||++...++..||++|+.++.... .. ...+..+++.++++.+||. +. .++++.+||||||||++|
T Consensus 80 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~-~~--~~~~~~~~~~~~l~~~gL~~~~~-~~~~~~~LSgGq~qrv~i 155 (287)
T PRK13637 80 DIRKKVGLVFQYPEYQLFEETIEKDIAFGPINL-GL--SEEEIENRVKRAMNIVGLDYEDY-KDKSPFELSGGQKRRVAI 155 (287)
T ss_pred HHhhceEEEecCchhccccccHHHHHHhHHHHC-CC--CHHHHHHHHHHHHHHcCCCchhh-ccCCcccCCHHHHHHHHH
Confidence 235689999999854455689999998752211 11 1233445678899999996 43 699999999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 172 AIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 172 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||||+.+|++|||||||+|||+.++.+++++|+++.+ +.|||++|||++++..+|||+++|++|+++..+
T Consensus 156 AraL~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~drv~~l~~G~i~~~g 227 (287)
T PRK13637 156 AGVVAMEPKILILDEPTAGLDPKGRDEILNKIKELHKEYNMTIILVSHSMEDVAKLADRIIVMNKGKCELQG 227 (287)
T ss_pred HHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999999863 689999999999999999999999999998754
|
|
| >COG0411 LivG ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-56 Score=371.52 Aligned_cols=222 Identities=31% Similarity=0.474 Sum_probs=195.0
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
.+++++++|+++|++ ..+++||||++++||+++||||||||||||+|+|+|+++|++|+|.++|+++...+.. +.
T Consensus 2 ~~lL~v~~l~k~FGG--l~Al~~Vsl~v~~Gei~~LIGPNGAGKTTlfNlitG~~~P~~G~v~~~G~~it~l~p~---~i 76 (250)
T COG0411 2 TPLLEVRGLSKRFGG--LTAVNDVSLEVRPGEIVGLIGPNGAGKTTLFNLITGFYKPSSGTVIFRGRDITGLPPH---RI 76 (250)
T ss_pred CceeeeccceeecCC--EEEEeceeEEEcCCeEEEEECCCCCCceeeeeeecccccCCCceEEECCcccCCCCHH---HH
Confidence 467999999999975 5799999999999999999999999999999999999999999999999999876532 12
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCC------C---CchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQ------S---GSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGY 165 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~------~---~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq 165 (245)
.+..|+--||.+. .|+.+||.||+..+.... . .......+..+++.++|+.+||.+. ++++..+||+||
T Consensus 77 ar~Gi~RTFQ~~r-lF~~lTVlENv~va~~~~~~~~~~l~~~~~~~~e~~~~e~A~~~Le~vgL~~~-a~~~A~~LsyG~ 154 (250)
T COG0411 77 ARLGIARTFQITR-LFPGLTVLENVAVGAHARLGLSGLLGRPRARKEEREARERARELLEFVGLGEL-ADRPAGNLSYGQ 154 (250)
T ss_pred Hhccceeeccccc-ccCCCcHHHHHHHHhhhhhhhhhhhccccchhhHHHHHHHHHHHHHHcCCchh-hcchhhcCChhH
Confidence 3567888999984 789999999998862211 0 0111234566788999999999986 799999999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEeccC
Q 035832 166 KRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQRI 243 (245)
Q Consensus 166 kqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~~ 243 (245)
|+|+.|||||+.+|++|+||||.+||.+....++.++|+++++ +.||++|.|||+.+..+||||++|+.|++++++.+
T Consensus 155 qR~LEIArALa~~P~lLLLDEPaAGln~~e~~~l~~~i~~i~~~~g~tillIEHdM~~Vm~l~dri~Vl~~G~~IAeG~P 234 (250)
T COG0411 155 QRRLEIARALATQPKLLLLDEPAAGLNPEETEELAELIRELRDRGGVTILLIEHDMKLVMGLADRIVVLNYGEVIAEGTP 234 (250)
T ss_pred hHHHHHHHHHhcCCCEEEecCccCCCCHHHHHHHHHHHHHHHhcCCcEEEEEEeccHHHhhhccEEEeccCCcCcccCCH
Confidence 9999999999999999999999999999999999999999985 38999999999999999999999999999998753
|
|
| >cd03296 ABC_CysA_sulfate_importer Part of the ABC transporter complex cysAWTP involved in sulfate import | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-55 Score=371.99 Aligned_cols=215 Identities=35% Similarity=0.522 Sum_probs=182.9
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
+|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... ..+
T Consensus 2 ~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~------~~~ 73 (239)
T cd03296 2 SIEVRNVSKRFGD--FVALDDVSLDIPSGELVALLGPSGSGKTTLLRLIAGLERPDSGTILFGGEDATDVP------VQE 73 (239)
T ss_pred EEEEEeEEEEECC--EEeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCC------ccc
Confidence 5999999999964 46999999999999999999999999999999999999999999999998864321 124
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCC-chhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSG-SIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
+.++|+||++. +++..|+.||+.++...... .........+.+.++++.+++.+. .++++.+|||||||||+|||||
T Consensus 74 ~~i~~v~q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrl~la~al 151 (239)
T cd03296 74 RNVGFVFQHYA-LFRHMTVFDNVAFGLRVKPRSERPPEAEIRAKVHELLKLVQLDWL-ADRYPAQLSGGQRQRVALARAL 151 (239)
T ss_pred cceEEEecCCc-ccCCCCHHHHHhhhhhhccccccCCHHHHHHHHHHHHHHcCChhh-hhcChhhCCHHHHHHHHHHHHH
Confidence 57999999984 56678999999875321110 000112233457788999999865 6899999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+.+|++|||||||+|||+.+++.++++|.++++ ++|||++|||++++..+||++++|++|+++..+
T Consensus 152 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~ 219 (239)
T cd03296 152 AVEPKVLLLDEPFGALDAKVRKELRRWLRRLHDELHVTTVFVTHDQEEALEVADRVVVMNKGRIEQVG 219 (239)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEec
Confidence 999999999999999999999999999999864 589999999999999999999999999997654
|
Responsible for energy coupling to the transport system. The complex is composed of two ATP-binding proteins (cysA), two transmembrane proteins (cysT and cysW), and a solute-binding protein (cysP). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11000 maltose/maltodextrin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-55 Score=394.52 Aligned_cols=213 Identities=30% Similarity=0.447 Sum_probs=185.6
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
++|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+. .
T Consensus 2 ~~l~i~~l~~~~~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLL~~iaGl~~p~~G~I~~~g~~i~~~~~------~ 73 (369)
T PRK11000 2 ASVTLRNVTKAYGD--VVISKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLEDITSGDLFIGEKRMNDVPP------A 73 (369)
T ss_pred CEEEEEEEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECCCCCH------h
Confidence 36999999999964 469999999999999999999999999999999999999999999999998753221 1
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
++++||+||++. +|+.+||.||+.++...... .......++.++++.++|.+. +++++.+|||||||||+|||||
T Consensus 74 ~~~i~~v~Q~~~-l~~~~tv~eni~~~~~~~~~---~~~~~~~~~~~~l~~lgL~~~-~~~~~~~LSgGq~QRvaLAraL 148 (369)
T PRK11000 74 ERGVGMVFQSYA-LYPHLSVAENMSFGLKLAGA---KKEEINQRVNQVAEVLQLAHL-LDRKPKALSGGQRQRVAIGRTL 148 (369)
T ss_pred HCCEEEEeCCcc-cCCCCCHHHHHHhHHhhcCC---CHHHHHHHHHHHHHHcCChhh-hcCChhhCCHHHHHHHHHHHHH
Confidence 357999999984 67789999999986321111 122334568889999999875 7999999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+.+|++|||||||++||+.+++.+++.|+++.+ +.|+|++|||++++..+||++++|++|+++..+
T Consensus 149 ~~~P~lLLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tvI~vTHd~~~~~~~~d~i~vl~~G~i~~~g 216 (369)
T PRK11000 149 VAEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216 (369)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 999999999999999999999999999999853 689999999999999999999999999998654
|
|
| >PRK13631 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-55 Score=386.91 Aligned_cols=232 Identities=30% Similarity=0.442 Sum_probs=190.1
Q ss_pred CCCccCCcceEEEEeEEEECCCC---ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCC
Q 035832 8 AGGISCDYSCLEVRDVSYRPPGT---QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNND 84 (245)
Q Consensus 8 ~~~~~~~~~~l~~~~l~~~y~~~---~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~ 84 (245)
-.....+.++|+++|++++|++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.
T Consensus 12 ~~~~~~~~~~l~~~nl~~~y~~~~~~~~~~L~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~L~Gl~~p~~G~I~i~g~~~~ 91 (320)
T PRK13631 12 VPNPLSDDIILRVKNLYCVFDEKQENELVALNNISYTFEKNKIYFIIGNSGSGKSTLVTHFNGLIKSKYGTIQVGDIYIG 91 (320)
T ss_pred CCCCCCCCceEEEEeEEEEeCCCCcccccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCEEcc
Confidence 34445566789999999999642 135999999999999999999999999999999999999999999999998874
Q ss_pred CCC-----------CC-CCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCc
Q 035832 85 GEP-----------NN-SPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGT 152 (245)
Q Consensus 85 ~~~-----------~~-~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 152 (245)
... .. ......++++||+||++...++..|+.||+.++.... .. .......++.++++.+++...
T Consensus 92 ~~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~eni~~~~~~~-~~--~~~~~~~~~~~~l~~~gL~~~ 168 (320)
T PRK13631 92 DKKNNHELITNPYSKKIKNFKELRRRVSMVFQFPEYQLFKDTIEKDIMFGPVAL-GV--KKSEAKKLAKFYLNKMGLDDS 168 (320)
T ss_pred cccccccccccccccccchHHHHHhcEEEEEECchhccccchHHHHHHhhHHhc-CC--CHHHHHHHHHHHHHHcCCChh
Confidence 320 00 0011235689999999853445679999998862111 11 122334567889999999632
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEE
Q 035832 153 SLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWR 231 (245)
Q Consensus 153 ~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~ 231 (245)
..++++.+|||||||||+|||||+.+|++|||||||+|||+.++..++++|.++++ +.|||++|||++++..+||++++
T Consensus 169 ~~~~~~~~LSgGqkqRvaiAraL~~~p~iLLLDEPtsgLD~~~~~~l~~~L~~l~~~g~TiiivtHd~~~~~~~adri~v 248 (320)
T PRK13631 169 YLERSPFGLSGGQKRRVAIAGILAIQPEILIFDEPTAGLDPKGEHEMMQLILDAKANNKTVFVITHTMEHVLEVADEVIV 248 (320)
T ss_pred HhcCCcccCCHHHHHHHHHHHHHHcCCCEEEEECCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEE
Confidence 36899999999999999999999999999999999999999999999999999864 68999999999999999999999
Q ss_pred EeCCeEEEecc
Q 035832 232 MDMGGFLVEQR 242 (245)
Q Consensus 232 l~~G~i~~~~~ 242 (245)
|++|+++..+.
T Consensus 249 l~~G~i~~~g~ 259 (320)
T PRK13631 249 MDKGKILKTGT 259 (320)
T ss_pred EECCEEEEeCC
Confidence 99999987653
|
|
| >PRK13646 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-55 Score=382.71 Aligned_cols=223 Identities=30% Similarity=0.486 Sum_probs=184.7
Q ss_pred eEEEEeEEEECCCCc---cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQ---VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
.|+++||+++|+++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++..........
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (286)
T PRK13646 2 TIRFDNVSYTYQKGTPYEHQAIHDVNTEFEQGKYYAIVGQTGSGKSTLIQNINALLKPTTGTVTVDDITITHKTKDKYIR 81 (286)
T ss_pred EEEEEEEEEEECCCCccccCceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 489999999996321 36999999999999999999999999999999999999999999999999875321111111
Q ss_pred CCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
.++++|||+||+|...++..|+.+|+.++.... .. .......++.++++.+||.....++++.+|||||||||+|||
T Consensus 82 ~~~~~ig~v~q~~~~~l~~~tv~e~i~~~~~~~-~~--~~~~~~~~~~~~l~~~gL~~~~~~~~~~~LSgGq~qrv~lar 158 (286)
T PRK13646 82 PVRKRIGMVFQFPESQLFEDTVEREIIFGPKNF-KM--NLDEVKNYAHRLLMDLGFSRDVMSQSPFQMSGGQMRKIAIVS 158 (286)
T ss_pred HHHhheEEEecChHhccchhhHHHHHHhhHHHc-CC--CHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHH
Confidence 235689999999743445569999998862111 11 122334567889999999622368899999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-c-CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLK-K-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
||+.+|++|||||||+|||+.++..+.++|+++. + +.|||++|||++++..+|||+++|++|+++..+.
T Consensus 159 aL~~~p~illlDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvl~vtH~~~~~~~~~dri~~l~~G~i~~~g~ 229 (286)
T PRK13646 159 ILAMNPDIIVLDEPTAGLDPQSKRQVMRLLKSLQTDENKTIILVSHDMNEVARYADEVIVMKEGSIVSQTS 229 (286)
T ss_pred HHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999985 3 6899999999999999999999999999987653
|
|
| >cd03226 ABC_cobalt_CbiO_domain2 Domain II of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-55 Score=366.13 Aligned_cols=204 Identities=30% Similarity=0.469 Sum_probs=176.1
Q ss_pred EEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCc
Q 035832 19 EVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEK 98 (245)
Q Consensus 19 ~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ 98 (245)
+++|++++|++. +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. ..++++
T Consensus 1 ~~~~l~~~~~~~-~~~l~~v~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-------~~~~~~ 72 (205)
T cd03226 1 RIENISFSYKKG-TEILDDLSLDLYAGEIIALTGKNGAGKTTLAKILAGLIKESSGSILLNGKPIKA-------KERRKS 72 (205)
T ss_pred CcccEEEEeCCc-CceeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEhhh-------HHhhcc
Confidence 368999999642 469999999999999999999999999999999999999999999999987632 123467
Q ss_pred EEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhC
Q 035832 99 VGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQV 178 (245)
Q Consensus 99 i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~ 178 (245)
++|+||++...++..|+.||+.++.... . ....++.++++.+++.+. .++++.+||||||||++|||||+.+
T Consensus 73 i~~~~q~~~~~~~~~tv~e~l~~~~~~~-~------~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrv~laral~~~ 144 (205)
T cd03226 73 IGYVMQDVDYQLFTDSVREELLLGLKEL-D------AGNEQAETVLKDLDLYAL-KERHPLSLSGGQKQRLAIAAALLSG 144 (205)
T ss_pred eEEEecChhhhhhhccHHHHHhhhhhhc-C------ccHHHHHHHHHHcCCchh-cCCCchhCCHHHHHHHHHHHHHHhC
Confidence 9999999743345679999998753211 1 012356788999999875 7999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhh-cCceEEEEecChhHHHhhccEEEEEeCCeEE
Q 035832 179 PDLLILDEPLAGLDWKARADVVKLLKHLK-KELTILVVSHDLKEMAALVDHSWRMDMGGFL 238 (245)
Q Consensus 179 p~llllDEPts~LD~~~~~~i~~~l~~l~-~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~ 238 (245)
|++|||||||+|||+.+++.++++|++++ ++.|||++|||++++..+||++++|++|+++
T Consensus 145 p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~iv 205 (205)
T cd03226 145 KDLLIFDEPTSGLDYKNMERVGELIRELAAQGKAVIVITHDYEFLAKVCDRVLLLANGAIV 205 (205)
T ss_pred CCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEC
Confidence 99999999999999999999999999985 4689999999999999999999999999874
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. The CbiMNQO family ABC transport system is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK13651 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-55 Score=385.39 Aligned_cols=222 Identities=31% Similarity=0.471 Sum_probs=184.4
Q ss_pred eEEEEeEEEECCCCc---cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCC-----
Q 035832 17 CLEVRDVSYRPPGTQ---VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPN----- 88 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~----- 88 (245)
+|+++|++++|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.....
T Consensus 2 ~i~~~~l~~~y~~~~~~~~~~l~~vsl~i~~Ge~v~iiG~nGsGKSTLl~~L~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (305)
T PRK13651 2 QIKVKNIVKIFNKKLPTELKALDNVSVEINQGEFIAIIGQTGSGKTTFIEHLNALLLPDTGTIEWIFKDEKNKKKTKEKE 81 (305)
T ss_pred EEEEEEEEEEECCCCCccccceeeeEEEEeCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEEeceeccccccccccc
Confidence 599999999996421 259999999999999999999999999999999999999999999999876521100
Q ss_pred --------C-------CCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCcc
Q 035832 89 --------N-------SPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTS 153 (245)
Q Consensus 89 --------~-------~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 153 (245)
. .....++++|||+||+|...++..||+||+.|+.... .. .......++.++++.+||....
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~ig~v~Q~~~~~l~~~tv~e~i~~~~~~~-~~--~~~~~~~~~~~~l~~~gL~~~~ 158 (305)
T PRK13651 82 KVLEKLVIQKTRFKKIKKIKEIRRRVGVVFQFAEYQLFEQTIEKDIIFGPVSM-GV--SKEEAKKRAAKYIELVGLDESY 158 (305)
T ss_pred ccccccccccccccccchHHHHHhceEEEeeCcccccccccHHHHHHhhHHHc-CC--CHHHHHHHHHHHHHHcCCChhh
Confidence 0 0011235679999999754556779999999863211 11 1233445688899999996323
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEE
Q 035832 154 LDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRM 232 (245)
Q Consensus 154 ~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l 232 (245)
+++++.+|||||||||+|||||+.+|++|||||||++||+.++..++++|+++++ +.|||++|||++++..+|||+++|
T Consensus 159 ~~~~~~~LSgGqkqrvalA~aL~~~P~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~adrv~vl 238 (305)
T PRK13651 159 LQRSPFELSGGQKRRVALAGILAMEPDFLVFDEPTAGLDPQGVKEILEIFDNLNKQGKTIILVTHDLDNVLEWTKRTIFF 238 (305)
T ss_pred hhCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeeCHHHHHHhCCEEEEE
Confidence 7999999999999999999999999999999999999999999999999999864 689999999999999999999999
Q ss_pred eCCeEEEec
Q 035832 233 DMGGFLVEQ 241 (245)
Q Consensus 233 ~~G~i~~~~ 241 (245)
++|+++..+
T Consensus 239 ~~G~i~~~g 247 (305)
T PRK13651 239 KDGKIIKDG 247 (305)
T ss_pred ECCEEEEEC
Confidence 999998754
|
|
| >PRK13647 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-55 Score=380.08 Aligned_cols=218 Identities=33% Similarity=0.500 Sum_probs=185.6
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
++|+++|+++.|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... ...+
T Consensus 3 ~~l~~~~l~~~~~~~-~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~----~~~~ 77 (274)
T PRK13647 3 NIIEVEDLHFRYKDG-TKALKGLSLSIPEGSKTALLGPNGAGKSTLLLHLNGIYLPQRGRVKVMGREVNAEN----EKWV 77 (274)
T ss_pred ceEEEEEEEEEeCCC-CeeeeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEECCCCC----HHHH
Confidence 379999999999632 46999999999999999999999999999999999999999999999998874321 1122
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
++++||+||++...++..|+.+|+.++.... . . .......++.++++.+++.+. .++++.+|||||||||+|||||
T Consensus 78 ~~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~-~-~-~~~~~~~~~~~~l~~~~L~~~-~~~~~~~LSgG~~qrv~laraL 153 (274)
T PRK13647 78 RSKVGLVFQDPDDQVFSSTVWDDVAFGPVNM-G-L-DKDEVERRVEEALKAVRMWDF-RDKPPYHLSYGQKKRVAIAGVL 153 (274)
T ss_pred HhhEEEEecChhhhhccCcHHHHHHhhHHHc-C-C-CHHHHHHHHHHHHHHCCCHHH-hcCChhhCCHHHHHHHHHHHHH
Confidence 4679999999743455689999998752111 1 1 122334567889999999875 7999999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
+.+|++|||||||++||+.++.+++++|+++++ +.|||++|||++++.++||++++|++|+++..+.
T Consensus 154 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tili~tH~~~~~~~~~d~i~~l~~G~i~~~g~ 221 (274)
T PRK13647 154 AMDPDVIVLDEPMAYLDPRGQETLMEILDRLHNQGKTVIVATHDVDLAAEWADQVIVLKEGRVLAEGD 221 (274)
T ss_pred HcCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 999999999999999999999999999999864 6899999999999999999999999999987653
|
|
| >COG1137 YhbG ABC-type (unclassified) transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-56 Score=363.20 Aligned_cols=221 Identities=25% Similarity=0.363 Sum_probs=192.6
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
+++|.++|+.|+|++ ++++++|||++++||+++|+|||||||||.+.+++|+.+|++|+|.++|.|++..+... .
T Consensus 2 ~~~L~a~~l~K~y~k--r~Vv~~Vsl~v~~GEiVGLLGPNGAGKTT~Fymi~Glv~~d~G~i~ld~~diT~lPm~~---R 76 (243)
T COG1137 2 MSTLVAENLAKSYKK--RKVVNDVSLEVNSGEIVGLLGPNGAGKTTTFYMIVGLVRPDSGKILLDDEDITKLPMHK---R 76 (243)
T ss_pred CcEEEehhhhHhhCC--eeeeeeeeEEEcCCcEEEEECCCCCCceeEEEEEEEEEecCCceEEECCcccccCChHH---H
Confidence 356999999999975 57999999999999999999999999999999999999999999999999998765422 1
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
.+..|||+||+++ .|-.+||.||+...+...... ....+.+.+++++|+.|++.+. .+++..+||||||+|+.||||
T Consensus 77 ArlGigYLpQE~S-IFr~LtV~dNi~~vlE~~~~d-~~~~~~~~~l~~LL~ef~i~hl-r~~~a~sLSGGERRR~EIARa 153 (243)
T COG1137 77 ARLGIGYLPQEAS-IFRKLTVEDNIMAVLEIREKD-LKKAERKEELDALLEEFHITHL-RDSKAYSLSGGERRRVEIARA 153 (243)
T ss_pred hhcCcccccccch-HhhcCcHHHHHHHHHhhhhcc-hhHHHHHHHHHHHHHHhchHHH-hcCcccccccchHHHHHHHHH
Confidence 2457999999996 688999999998753221111 1122334457899999999986 699999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEeccC
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQRI 243 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~~ 243 (245)
|+.+|+++||||||+|+||.+..++.++++.++. +..|+++.|+..+...+|||.+++.+|++++++++
T Consensus 154 La~~P~fiLLDEPFAGVDPiaV~dIq~iI~~L~~rgiGvLITDHNVREtL~i~dRaYIi~~G~vla~G~p 223 (243)
T COG1137 154 LAANPKFILLDEPFAGVDPIAVIDIQRIIKHLKDRGIGVLITDHNVRETLDICDRAYIISDGKVLAEGSP 223 (243)
T ss_pred HhcCCCEEEecCCccCCCchhHHHHHHHHHHHHhCCceEEEccccHHHHHhhhheEEEEecCeEEecCCH
Confidence 9999999999999999999999999999999975 69999999999999999999999999999998753
|
|
| >PRK15079 oligopeptide ABC transporter ATP-binding protein OppF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-55 Score=389.94 Aligned_cols=226 Identities=25% Similarity=0.344 Sum_probs=187.6
Q ss_pred CcceEEEEeEEEECCCC-----------ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCcc
Q 035832 14 DYSCLEVRDVSYRPPGT-----------QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYN 82 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~-----------~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 82 (245)
..++|+++||+++|+.+ ...+++||||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|++
T Consensus 5 ~~~~l~v~~l~~~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTLlk~i~Gl~~p~~G~I~~~G~~ 84 (331)
T PRK15079 5 KKVLLEVADLKVHFDIKDGKQWFWQPPKTLKAVDGVTLRLYEGETLGVVGESGCGKSTFARAIIGLVKATDGEVAWLGKD 84 (331)
T ss_pred CCceEEEeCeEEEECCCCccccccccCCceEEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHCCCCCCCcEEEECCEE
Confidence 45689999999999621 2469999999999999999999999999999999999999999999999998
Q ss_pred CCCCCCCCCCCCCCCcEEEEecCCC-CCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCC
Q 035832 83 NDGEPNNSPEPLPPEKVGIVFQFPE-RYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSL 161 (245)
Q Consensus 83 ~~~~~~~~~~~~~~~~i~~v~Q~~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L 161 (245)
+......... .++++++||||+|. .+++.+|+.+|+.++........ ...+..+++.++++.+++.+..+++++++|
T Consensus 85 i~~~~~~~~~-~~r~~i~~v~Q~~~~~l~p~~tv~~~i~~~l~~~~~~~-~~~~~~~~~~~~l~~vgl~~~~~~~~p~~L 162 (331)
T PRK15079 85 LLGMKDDEWR-AVRSDIQMIFQDPLASLNPRMTIGEIIAEPLRTYHPKL-SRQEVKDRVKAMMLKVGLLPNLINRYPHEF 162 (331)
T ss_pred CCcCCHHHHH-HHhCceEEEecCchhhcCCCCCHHHHHHHHHHHhccCC-CHHHHHHHHHHHHHHcCCChHHhcCCcccC
Confidence 7543211111 12467999999984 35567899999987521110001 123344567889999999543469999999
Q ss_pred ChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEE
Q 035832 162 SGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLV 239 (245)
Q Consensus 162 SgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~ 239 (245)
||||+|||+|||||+.+|++||+||||++||+.++.+++++|+++.+ +.|+|+||||++++..+||++++|.+|+++.
T Consensus 163 SgG~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~~~til~iTHdl~~~~~~~dri~vl~~G~ive 242 (331)
T PRK15079 163 SGGQCQRIGIARALILEPKLIICDEPVSALDVSIQAQVVNLLQQLQREMGLSLIFIAHDLAVVKHISDRVLVMYLGHAVE 242 (331)
T ss_pred CHHHHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999999999999999999999864 6899999999999999999999999999987
Q ss_pred ec
Q 035832 240 EQ 241 (245)
Q Consensus 240 ~~ 241 (245)
.+
T Consensus 243 ~g 244 (331)
T PRK15079 243 LG 244 (331)
T ss_pred Ec
Confidence 64
|
|
| >TIGR01288 nodI ATP-binding ABC transporter family nodulation protein NodI | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-55 Score=383.91 Aligned_cols=215 Identities=28% Similarity=0.374 Sum_probs=184.0
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
.++|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ..
T Consensus 2 ~~~i~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~-----~~ 74 (303)
T TIGR01288 2 NVAIDLVGVSKSYGD--KVVVNDLSFTIARGECFGLLGPNGAGKSTIARMLLGMISPDRGKITVLGEPVPSRA-----RL 74 (303)
T ss_pred CcEEEEEeEEEEeCC--eEEEcceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcccH-----HH
Confidence 357999999999964 46999999999999999999999999999999999999999999999998764211 12
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
.++++||+||++. +++.+|+.||+.+..... .. .......++.++++.+++.+. .++++.+||||||||++||||
T Consensus 75 ~~~~i~~v~q~~~-~~~~~tv~e~l~~~~~~~-~~--~~~~~~~~~~~ll~~~~l~~~-~~~~~~~LSgG~~qrv~la~a 149 (303)
T TIGR01288 75 ARVAIGVVPQFDN-LDPEFTVRENLLVFGRYF-GM--STREIEAVIPSLLEFARLESK-ADVRVALLSGGMKRRLTLARA 149 (303)
T ss_pred HhhcEEEEecccc-CCcCCcHHHHHHHHHHHc-CC--CHHHHHHHHHHHHHHCCChhH-hcCchhhCCHHHHHHHHHHHH
Confidence 3567999999985 566789999997531111 11 112233456788999999875 699999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|+.+|++|||||||+|||+.+++.++++|+++++ +.|||++|||++++..+||++++|++|+++..+
T Consensus 150 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~g~til~~sH~~~~~~~~~d~i~~l~~G~i~~~g 217 (303)
T TIGR01288 150 LINDPQLLILDEPTTGLDPHARHLIWERLRSLLARGKTILLTTHFMEEAERLCDRLCVLESGRKIAEG 217 (303)
T ss_pred HhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 9999999999999999999999999999999864 689999999999999999999999999998754
|
This model does not recognize the highly divergent NodI from Azorhizobium caulinodans. |
| >cd03293 ABC_NrtD_SsuB_transporters NrtD and SsuB are the ATP-binding subunits of the bacterial ABC-type nitrate and sulfonate transport systems, respectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-54 Score=365.34 Aligned_cols=212 Identities=37% Similarity=0.538 Sum_probs=181.3
Q ss_pred EEEEeEEEECCCCc--cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQ--VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 18 l~~~~l~~~y~~~~--~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
|+++|++++|++.. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .
T Consensus 1 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~---------~ 71 (220)
T cd03293 1 LEVRNVSKTYGGGGGAVTALEDISLSVEEGEFVALVGPSGCGKSTLLRIIAGLERPTSGEVLVDGEPVTG---------P 71 (220)
T ss_pred CeEEEEEEEcCCCCcceEEEeceeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECcc---------c
Confidence 47899999996411 469999999999999999999999999999999999999999999999987631 2
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
+++++|+||++. +++..|+.||+.++.... .. ......+.+.++++.+++.+. .++++.+||||||||++|||||
T Consensus 72 ~~~i~~v~q~~~-~~~~~tv~e~l~~~~~~~-~~--~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgG~~qrl~la~al 146 (220)
T cd03293 72 GPDRGYVFQQDA-LLPWLTVLDNVALGLELQ-GV--PKAEARERAEELLELVGLSGF-ENAYPHQLSGGMRQRVALARAL 146 (220)
T ss_pred cCcEEEEecccc-cccCCCHHHHHHHHHHHc-CC--CHHHHHHHHHHHHHHcCChhh-hhCCcccCCHHHHHHHHHHHHH
Confidence 457999999985 566689999998752111 11 112234467889999999875 6899999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-c-CceEEEEecChhHHHhhccEEEEEe--CCeEEEeccC
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLK-K-ELTILVVSHDLKEMAALVDHSWRMD--MGGFLVEQRI 243 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~-~~tiii~tHd~~~~~~~~d~v~~l~--~G~i~~~~~~ 243 (245)
+.+|++|||||||+|||+.+++.++++|+++. + +.|||++||+++++..+||++++|+ +|+++.+..+
T Consensus 147 ~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~G~i~~~~~~ 218 (220)
T cd03293 147 AVDPDVLLLDEPFSALDALTREQLQEELLDIWRETGKTVLLVTHDIDEAVFLADRVVVLSARPGRIVAEVEV 218 (220)
T ss_pred HcCCCEEEECCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCCCEEEEEEEe
Confidence 99999999999999999999999999999984 3 5899999999999999999999999 7999876543
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03301 ABC_MalK_N The N-terminal ATPase domain of the maltose transporter, MalK | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-54 Score=363.89 Aligned_cols=210 Identities=30% Similarity=0.497 Sum_probs=180.9
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. .++
T Consensus 1 i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~v~~~g~~~~~~~~------~~~ 72 (213)
T cd03301 1 VELENVTKRFGN--VTALDDLNLDIADGEFVVLLGPSGCGKTTTLRMIAGLEEPTSGRIYIGGRDVTDLPP------KDR 72 (213)
T ss_pred CEEEeeEEEECC--eeeeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCc------ccc
Confidence 478999999974 469999999999999999999999999999999999999999999999988743211 135
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ 177 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~ 177 (245)
+++|+||++. +++..|+.||+.++.... .. ......+.+.++++.+|+.+. .++++.+||||||||++|||||+.
T Consensus 73 ~i~~~~q~~~-~~~~~tv~~~l~~~~~~~-~~--~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qr~~laral~~ 147 (213)
T cd03301 73 DIAMVFQNYA-LYPHMTVYDNIAFGLKLR-KV--PKDEIDERVREVAELLQIEHL-LDRKPKQLSGGQRQRVALGRAIVR 147 (213)
T ss_pred eEEEEecChh-hccCCCHHHHHHHHHHhc-CC--CHHHHHHHHHHHHHHcCCHHH-HhCChhhCCHHHHHHHHHHHHHhc
Confidence 7999999984 566789999998752111 11 122334467888999999865 699999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEe
Q 035832 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~ 240 (245)
+|+++||||||+|||+.+++.++++|+++.+ +.|||++|||++++..+||++++|++|+++..
T Consensus 148 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~g~~~~~ 212 (213)
T cd03301 148 EPKVFLMDEPLSNLDAKLRVQMRAELKRLQQRLGTTTIYVTHDQVEAMTMADRIAVMNDGQIQQI 212 (213)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEec
Confidence 9999999999999999999999999999863 68999999999999999999999999999764
|
ATP binding cassette (ABC) proteins function from bacteria to human, mediating the translocation of substances into and out of cells or organelles. ABC transporters contain two transmembrane-spanning domains (TMDs) or subunits and two nucleotide binding domains (NBDs) or subunits that couple transport to the hydrolysis of ATP. In the maltose transport system, the periplasmic maltose binding protein (MBP) stimulates the ATPase activity of the membrane-associated transporter, which consists of two transmembrane subunits, MalF and MalG, and two copies of the ATP binding subunit, MalK, and becomes tightly bound to the transporter in the catalytic transition state, ensuring that maltose is passed to the transporter as ATP is hydrolyzed. |
| >cd03265 ABC_DrrA DrrA is the ATP-binding protein component of a bacterial exporter complex that confers resistance to the antibiotics daunorubicin and doxorubicin | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-55 Score=367.49 Aligned_cols=212 Identities=31% Similarity=0.436 Sum_probs=181.9
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ...++
T Consensus 1 i~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~-----~~~~~ 73 (220)
T cd03265 1 IEVENLVKKYGD--FEAVRGVSFRVRRGEIFGLLGPNGAGKTTTIKMLTTLLKPTSGRATVAGHDVVREP-----REVRR 73 (220)
T ss_pred CEEEEEEEEECC--EEeeeceeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecCcCh-----HHHhh
Confidence 579999999964 46999999999999999999999999999999999999999999999998764311 12246
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ 177 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~ 177 (245)
+++|+||++. +++..|+.+|+.++.... .. .......++.++++.+++.+. .++++.+||||||||++|||||+.
T Consensus 74 ~i~~~~q~~~-~~~~~tv~~~l~~~~~~~-~~--~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qr~~la~al~~ 148 (220)
T cd03265 74 RIGIVFQDLS-VDDELTGWENLYIHARLY-GV--PGAERRERIDELLDFVGLLEA-ADRLVKTYSGGMRRRLEIARSLVH 148 (220)
T ss_pred cEEEecCCcc-ccccCcHHHHHHHHHHHc-CC--CHHHHHHHHHHHHHHcCCHHH-hhCChhhCCHHHHHHHHHHHHHhc
Confidence 7999999984 666789999998752111 11 112234467889999999875 699999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+|+++||||||++||+.+++.++++|+++.+ +.|||++|||++++..+||++++|++|+++..+
T Consensus 149 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 214 (220)
T cd03265 149 RPEVLFLDEPTIGLDPQTRAHVWEYIEKLKEEFGMTILLTTHYMEEAEQLCDRVAIIDHGRIIAEG 214 (220)
T ss_pred CCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEeC
Confidence 9999999999999999999999999999863 589999999999999999999999999998654
|
In addition to DrrA, the complex includes an integral membrane protein called DrrB. DrrA belongs to the ABC family of transporters and shares sequence and functional similarities with a protein found in cancer cells called P-glycoprotein. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK09536 btuD corrinoid ABC transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-55 Score=395.61 Aligned_cols=219 Identities=27% Similarity=0.341 Sum_probs=188.0
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
++|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...+. ..+
T Consensus 2 ~~L~~~nls~~y~~--~~vL~~vs~~i~~Geiv~liGpNGaGKSTLLk~LaGll~p~sG~I~l~G~~i~~~~~----~~~ 75 (402)
T PRK09536 2 PMIDVSDLSVEFGD--TTVLDGVDLSVREGSLVGLVGPNGAGKTTLLRAINGTLTPTAGTVLVAGDDVEALSA----RAA 75 (402)
T ss_pred ceEEEeeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEEcCcCCH----HHH
Confidence 47999999999974 579999999999999999999999999999999999999999999999998754321 123
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCC-CchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQS-GSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
++++||++|++. +++.+|+.||+.++..... ..........+++.++++.+++.+. .++++.+|||||||||+||||
T Consensus 76 ~~~ig~v~q~~~-l~~~~tv~e~v~~~~~~~~~~~~~~~~~~~~~v~~~le~vgl~~~-~~~~~~~LSgGerQRv~IArA 153 (402)
T PRK09536 76 SRRVASVPQDTS-LSFEFDVRQVVEMGRTPHRSRFDTWTETDRAAVERAMERTGVAQF-ADRPVTSLSGGERQRVLLARA 153 (402)
T ss_pred hcceEEEccCCC-CCCCCCHHHHHHhccchhcccccCCCHHHHHHHHHHHHHcCCchh-hcCChhhCCHHHHHHHHHHHH
Confidence 567999999985 5668999999998632110 0000112334568899999999875 799999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
|+++|++|||||||+|||+.++.+++++|+++.+ +.|||++|||++++.++|||+++|++|+++..+.
T Consensus 154 L~~~P~iLLLDEPtsgLD~~~~~~l~~lL~~l~~~g~TIIivsHdl~~~~~~adrii~l~~G~iv~~G~ 222 (402)
T PRK09536 154 LAQATPVLLLDEPTASLDINHQVRTLELVRRLVDDGKTAVAAIHDLDLAARYCDELVLLADGRVRAAGP 222 (402)
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecC
Confidence 9999999999999999999999999999999974 6899999999999999999999999999987653
|
|
| >cd03266 ABC_NatA_sodium_exporter NatA is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-55 Score=367.18 Aligned_cols=214 Identities=26% Similarity=0.419 Sum_probs=182.8
Q ss_pred eEEEEeEEEECCCCc--cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQ--VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~--~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
||+++|++++|++.. .++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ..
T Consensus 1 ~l~~~~v~~~~~~~~~~~~il~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-----~~ 75 (218)
T cd03266 1 MITADALTKRFRDVKKTVQAVDGVSFTVKPGEVTGLLGPNGAGKTTTLRMLAGLLEPDAGFATVDGFDVVKEP-----AE 75 (218)
T ss_pred CeEEEEEEEecCCCCccceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEEcccCH-----HH
Confidence 588999999997421 16999999999999999999999999999999999999999999999998874311 12
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
+++.++|+||++. +++..|+.||+.+..... .. .......++.++++.+|+.+. +++++.+||||||||++||||
T Consensus 76 ~~~~i~~~~q~~~-~~~~~tv~e~l~~~~~~~-~~--~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrv~lara 150 (218)
T cd03266 76 ARRRLGFVSDSTG-LYDRLTARENLEYFAGLY-GL--KGDELTARLEELADRLGMEEL-LDRRVGGFSTGMRQKVAIARA 150 (218)
T ss_pred HHhhEEEecCCcc-cCcCCCHHHHHHHHHHHc-CC--CHHHHHHHHHHHHHHcCCHHH-HhhhhhhcCHHHHHHHHHHHH
Confidence 3567999999984 666789999998642111 10 112234567889999999875 699999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEe
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~ 240 (245)
|+.+|++|||||||++||+.+++.++++|+++++ +.|||++|||++++..+||++++|++|+++..
T Consensus 151 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~i~~~ 217 (218)
T cd03266 151 LVHDPPVLLLDEPTTGLDVMATRALREFIRQLRALGKCILFSTHIMQEVERLCDRVVVLHRGRVVYE 217 (218)
T ss_pred HhcCCCEEEEcCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhcCEEEEEECCEEeec
Confidence 9999999999999999999999999999999864 68999999999999999999999999998754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilus, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of a single ATP-binding protein and a single intergral membrane protein. |
| >cd03263 ABC_subfamily_A The ABCA subfamily mediates the transport of a variety of lipid compounds | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-55 Score=367.16 Aligned_cols=214 Identities=29% Similarity=0.429 Sum_probs=182.5
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|++++|++..+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ..+++
T Consensus 1 l~~~~l~~~~~~~~~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-----~~~~~ 75 (220)
T cd03263 1 LQIRNLTKTYKKGTKPAVDDLSLNVYKGEIFGLLGHNGAGKTTTLKMLTGELRPTSGTAYINGYSIRTDR-----KAARQ 75 (220)
T ss_pred CEEEeeEEEeCCCCceeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccch-----HHHhh
Confidence 5789999999642246999999999999999999999999999999999999999999999998764321 12356
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ 177 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~ 177 (245)
+++|+||++. +++..|+.+|+.+..... .. ......+++.++++.+++.+. .++++.+||||||||++|||||+.
T Consensus 76 ~i~~v~q~~~-~~~~~tv~~~l~~~~~~~-~~--~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrv~la~al~~ 150 (220)
T cd03263 76 SLGYCPQFDA-LFDELTVREHLRFYARLK-GL--PKSEIKEEVELLLRVLGLTDK-ANKRARTLSGGMKRKLSLAIALIG 150 (220)
T ss_pred hEEEecCcCC-ccccCCHHHHHHHHHHHc-CC--CHHHHHHHHHHHHHHcCCHHH-HhChhhhCCHHHHHHHHHHHHHhc
Confidence 7999999984 566789999998742111 11 112233467888999999865 689999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+|++|||||||++||+.+++.+.+.|++++++.|||++||+++++..+||++++|++|+++..+
T Consensus 151 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~~ 214 (220)
T cd03263 151 GPSVLLLDEPTSGLDPASRRAIWDLILEVRKGRSIILTTHSMDEAEALCDRIAIMSDGKLRCIG 214 (220)
T ss_pred CCCEEEECCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999876789999999999999999999999999998654
|
Mutations of members of ABCA subfamily are associated with human genetic diseases, such as, familial high-density lipoprotein (HDL) deficiency, neonatal surfactant deficiency, degenerative retinopathies, and congenital keratinization disorders. The ABCA1 protein is involved in disorders of cholesterol transport and high-density lipoprotein (HDL) biosynthesis. The ABCA4 (ABCR) protein transports vitamin A derivatives in the outer segments of photoreceptor cells, and therefore, performs a crucial step in the visual cycle. The ABCA genes are not present in yeast. However, evolutionary studies of ABCA genes indicate that they arose as transporters that subsequently duplicated and that certain sets of ABCA genes were lost in different eukaryotic lineages. |
| >PRK13641 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-54 Score=380.31 Aligned_cols=221 Identities=33% Similarity=0.526 Sum_probs=183.5
Q ss_pred eEEEEeEEEECCCC---ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGT---QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 17 ~l~~~~l~~~y~~~---~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
+|+++|++++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..........
T Consensus 2 ~i~~~~l~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~iiG~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 81 (287)
T PRK13641 2 SIKFENVDYIYSPGTPMEKKGLDNISFELEEGSFVALVGHTGSGKSTLMQHFNALLKPSSGTITIAGYHITPETGNKNLK 81 (287)
T ss_pred EEEEEEEEEEcCCCCCccccceeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECccccccchHH
Confidence 68999999999632 146999999999999999999999999999999999999999999999999874311000011
Q ss_pred CCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCC-CccCCCCCCCCChHHHHHHHHH
Q 035832 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLD-GTSLDKDPHSLSGGYKRRLALA 172 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~LSgGqkqrv~iA 172 (245)
..++.++|+||++...++..|+.||+.++...... .......++.++++.+|+. .. .++++.+||||||||++||
T Consensus 82 ~~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~~~---~~~~~~~~~~~~l~~~gL~~~~-~~~~~~~LSgGq~qrl~la 157 (287)
T PRK13641 82 KLRKKVSLVFQFPEAQLFENTVLKDVEFGPKNFGF---SEDEAKEKALKWLKKVGLSEDL-ISKSPFELSGGQMRRVAIA 157 (287)
T ss_pred HHHhceEEEEeChhhhhccchHHHHHHHHHHHcCC---CHHHHHHHHHHHHHHcCCChhH-hhCCcccCCHHHHHHHHHH
Confidence 22457999999974334468999999875211111 1223344678899999997 44 6999999999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 173 IQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 173 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|||+.+|++|||||||+|||+.+++.+.++|+++++ +.|||++|||++++..+||++++|++|+++..+
T Consensus 158 ral~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tvlivsH~~~~~~~~~d~v~~l~~G~i~~~g 227 (287)
T PRK13641 158 GVMAYEPEILCLDEPAAGLDPEGRKEMMQLFKDYQKAGHTVILVTHNMDDVAEYADDVLVLEHGKLIKHA 227 (287)
T ss_pred HHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999864 689999999999999999999999999998654
|
|
| >COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-55 Score=378.50 Aligned_cols=221 Identities=32% Similarity=0.410 Sum_probs=196.5
Q ss_pred eEEEEeEEEECCCCc----------------------cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcc
Q 035832 17 CLEVRDVSYRPPGTQ----------------------VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSG 74 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~----------------------~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G 74 (245)
.|+++|+++-|+++. ..-++|+||+++.|||+.|+|-||||||||+|++++|++|++|
T Consensus 4 ~i~i~nv~kiFG~~~~~a~~~~~~G~~k~ei~~~tg~vvGv~~~sl~v~~GeIfViMGLSGSGKSTLvR~~NrLiept~G 83 (386)
T COG4175 4 KIEIKNVYKIFGKNPKRALKLLDQGKSKAEILKKTGLVVGVNDASLDVEEGEIFVIMGLSGSGKSTLVRLLNRLIEPTRG 83 (386)
T ss_pred eEEeecceeecccCHHHHHHHHHcCCcHHHHHHhhCcEEeeccceeeecCCeEEEEEecCCCCHHHHHHHHhccCCCCCc
Confidence 589999999886421 2367999999999999999999999999999999999999999
Q ss_pred eEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccC
Q 035832 75 SINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSL 154 (245)
Q Consensus 75 ~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~ 154 (245)
+|.++|.++...+.......+++++++|||++. ++|+.||.||+.||+..... .+.+.++++.++++.+||..+ .
T Consensus 84 ~ilv~g~di~~~~~~~Lr~~Rr~~~sMVFQ~Fa-LlPhrtVl~Nv~fGLev~Gv---~~~er~~~a~~~l~~VgL~~~-~ 158 (386)
T COG4175 84 EILVDGKDIAKLSAAELRELRRKKISMVFQSFA-LLPHRTVLENVAFGLEVQGV---PKAEREERALEALELVGLEGY-A 158 (386)
T ss_pred eEEECCcchhcCCHHHHHHHHhhhhhhhhhhhc-cccchhHhhhhhcceeecCC---CHHHHHHHHHHHHHHcCchhh-h
Confidence 999999999877655555567789999999985 88999999999998543221 244566788999999999985 7
Q ss_pred CCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEE
Q 035832 155 DKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRM 232 (245)
Q Consensus 155 ~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l 232 (245)
+++|++|||||||||.|||||+.+|++||+|||||+|||--+.++.+.|.++.+ .+||+|||||++++.++.|||.+|
T Consensus 159 ~~yp~eLSGGMqQRVGLARAla~~~~IlLMDEaFSALDPLIR~~mQdeLl~Lq~~l~KTIvFitHDLdEAlriG~rIaim 238 (386)
T COG4175 159 DKYPNELSGGMQQRVGLARALANDPDILLMDEAFSALDPLIRTEMQDELLELQAKLKKTIVFITHDLDEALRIGDRIAIM 238 (386)
T ss_pred hcCcccccchHHHHHHHHHHHccCCCEEEecCchhhcChHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHHhccceEEEe
Confidence 999999999999999999999999999999999999999999999999999975 489999999999999999999999
Q ss_pred eCCeEEEecc
Q 035832 233 DMGGFLVEQR 242 (245)
Q Consensus 233 ~~G~i~~~~~ 242 (245)
++|+++-.+.
T Consensus 239 kdG~ivQ~Gt 248 (386)
T COG4175 239 KDGEIVQVGT 248 (386)
T ss_pred cCCeEEEeCC
Confidence 9999986553
|
|
| >cd03219 ABC_Mj1267_LivG_branched The Mj1267/LivG ABC transporter subfamily is involved in the transport of the hydrophobic amino acids leucine, isoleucine and valine | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-54 Score=369.54 Aligned_cols=217 Identities=33% Similarity=0.522 Sum_probs=182.6
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|++++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... ....+.
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~---~~~~~~ 75 (236)
T cd03219 1 LEVRGLTKRFGG--LVALDDVSFSVRPGEIHGLIGPNGAGKTTLFNLISGFLRPTSGSVLFDGEDITGLPP---HEIARL 75 (236)
T ss_pred CeeeeeEEEECC--EEEecCceEEecCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEECCCCCH---HHHHhc
Confidence 468999999964 469999999999999999999999999999999999999999999999987743211 111235
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCch-------hHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHH
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSI-------QLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLA 170 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~-------~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ 170 (245)
.++|+||++. +++..|+.||+.++........ .........+.++++.+|+++. .++++.+|||||||||+
T Consensus 76 ~i~~v~q~~~-l~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgG~~qrv~ 153 (236)
T cd03219 76 GIGRTFQIPR-LFPELTVLENVMVAAQARTGSGLLLARARREEREARERAEELLERVGLADL-ADRPAGELSYGQQRRLE 153 (236)
T ss_pred CEEEEecccc-cccCCCHHHHHHHHHhhccccccccccccccHHHHHHHHHHHHHHcCccch-hhCChhhCCHHHHHHHH
Confidence 6999999985 6677899999987532111100 0012234467889999999875 69999999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-cCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 171 LAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLK-KELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 171 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|||||+.+|++|||||||++||+.+++.++++|++++ +++|||++|||++++..+||++++|++|+++..+
T Consensus 154 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~ 225 (236)
T cd03219 154 IARALATDPKLLLLDEPAAGLNPEETEELAELIRELRERGITVLLVEHDMDVVMSLADRVTVLDQGRVIAEG 225 (236)
T ss_pred HHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEeec
Confidence 9999999999999999999999999999999999986 4689999999999999999999999999998654
|
MJ1267 is a branched-chain amino acid transporter with 29% similarity to both the LivF and LivG components of the E. coli branched-chain amino acid transporter. MJ1267 contains an insertion from residues 114 to 123 characteristic of LivG (Leucine-Isoleucine-Valine) homologs. The branched-chain amino acid transporter from E. coli comprises a heterodimer of ABCs (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). |
| >TIGR02673 FtsE cell division ATP-binding protein FtsE | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-55 Score=365.27 Aligned_cols=213 Identities=32% Similarity=0.487 Sum_probs=179.7
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
||+++|++++|++ .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....... ...++
T Consensus 1 ~l~~~~l~~~~~~-~~~il~~is~~i~~G~~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~~~-~~~~~ 78 (214)
T TIGR02673 1 MIEFHNVSKAYPG-GVAALHDVSLHIRKGEFLFLTGPSGAGKTTLLKLLYGALTPSRGQVRIAGEDVNRLRGRQ-LPLLR 78 (214)
T ss_pred CEEEEeeeEEeCC-CceeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHH-HHHHH
Confidence 5899999999952 246999999999999999999999999999999999999999999999998875321110 01124
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
+.++|+||++. +++..|+.+|+.++.... .. ......+.+.++++.+++.+. .++++.+||||||||++|||||+
T Consensus 79 ~~i~~~~q~~~-~~~~~tv~~~l~~~~~~~-~~--~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrl~la~al~ 153 (214)
T TIGR02673 79 RRIGVVFQDFR-LLPDRTVYENVALPLEVR-GK--KEREIQRRVGAALRQVGLEHK-ADAFPEQLSGGEQQRVAIARAIV 153 (214)
T ss_pred hheEEEecChh-hccCCcHHHHHHHHHHHc-CC--CHHHHHHHHHHHHHHcCChhh-hhCChhhCCHHHHHHHHHHHHHh
Confidence 67999999984 566789999998752111 10 112234567889999999864 68999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCe
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGG 236 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~ 236 (245)
.+|++|||||||+|||+.++..+.++|+++++ +.|||++||+++++..+||++++|++|+
T Consensus 154 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~i~~l~~G~ 214 (214)
T TIGR02673 154 NSPPLLLADEPTGNLDPDLSERILDLLKRLNKRGTTVIVATHDLSLVDRVAHRVIILDDGR 214 (214)
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEecCCC
Confidence 99999999999999999999999999999864 6899999999999999999999999885
|
This model describes FtsE, a member of the ABC transporter ATP-binding protein family. This protein, and its permease partner FtsX, localize to the division site. In a number of species, the ftsEX gene pair is located next to FtsY, the signal recognition particle-docking protein. |
| >PRK13650 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-54 Score=378.12 Aligned_cols=217 Identities=32% Similarity=0.511 Sum_probs=184.7
Q ss_pred ceEEEEeEEEECCCC-ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGT-QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
++|+++|++++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++..... ..
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~----~~ 78 (279)
T PRK13650 3 NIIEVKNLTFKYKEDQEKYTLNDVSFHVKQGEWLSIIGHNGSGKSTTVRLIDGLLEAESGQIIIDGDLLTEENV----WD 78 (279)
T ss_pred ceEEEEeEEEEcCCCCcCeeeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEECCcCcH----HH
Confidence 479999999999642 2459999999999999999999999999999999999999999999999998753211 12
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
+++++||+||++..+++..||.+|+.++.... .. ......+++.++++.+||.+. .++++.+||||||||++||||
T Consensus 79 ~~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~-~~--~~~~~~~~~~~~l~~~gL~~~-~~~~~~~LSgGq~qrv~lAra 154 (279)
T PRK13650 79 IRHKIGMVFQNPDNQFVGATVEDDVAFGLENK-GI--PHEEMKERVNEALELVGMQDF-KEREPARLSGGQKQRVAIAGA 154 (279)
T ss_pred HHhhceEEEcChHHhcccccHHHHHHhhHHhC-CC--CHHHHHHHHHHHHHHCCCHhH-hhCCcccCCHHHHHHHHHHHH
Confidence 34679999999743566789999998863211 11 122334567889999999875 799999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|+.+|++|||||||+|||+.+++.++++|+++++ +.|||++|||++++ .+||++++|++|+++..+
T Consensus 155 l~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tilivtH~~~~~-~~~dri~~l~~G~i~~~g 222 (279)
T PRK13650 155 VAMRPKIIILDEATSMLDPEGRLELIKTIKGIRDDYQMTVISITHDLDEV-ALSDRVLVMKNGQVESTS 222 (279)
T ss_pred HHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-HhCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999863 68999999999998 589999999999998754
|
|
| >COG3840 ThiQ ABC-type thiamine transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-55 Score=348.02 Aligned_cols=211 Identities=31% Similarity=0.481 Sum_probs=186.2
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
||.+++|.++|+. .==.++++|+.||+++|+|||||||||||++|+|++.|.+|+|+++|++....... .
T Consensus 1 ~l~L~~V~~~y~~----~~~~fdl~v~~ge~vAi~GpSGaGKSTLLnLIAGF~~P~~G~i~i~g~d~t~~~P~------~ 70 (231)
T COG3840 1 MLALDDVRFSYGH----LPMRFDLTVPAGEIVAILGPSGAGKSTLLNLIAGFETPASGEILINGVDHTASPPA------E 70 (231)
T ss_pred CccccceEEeeCc----ceEEEEEeecCCcEEEEECCCCccHHHHHHHHHhccCCCCceEEEcCeecCcCCcc------c
Confidence 5788999999963 23478999999999999999999999999999999999999999999998654321 4
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
+-++++||+. ++|..+||.+|+.+|...... .....+++++.++.++||..+ .++.|.+|||||||||+|||+|+
T Consensus 71 RPVSmlFQEn-NLFaHLtV~qNigLGl~P~Lk---L~a~~r~~v~~aa~~vGl~~~-~~RLP~~LSGGqRQRvALARclv 145 (231)
T COG3840 71 RPVSMLFQEN-NLFAHLTVAQNIGLGLSPGLK---LNAEQREKVEAAAAQVGLAGF-LKRLPGELSGGQRQRVALARCLV 145 (231)
T ss_pred CChhhhhhcc-ccchhhhhhhhhcccCCcccc---cCHHHHHHHHHHHHHhChhhH-hhhCccccCchHHHHHHHHHHHh
Confidence 5699999997 589999999999998543221 234456778999999999986 79999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
.+-+||+||||||+|||.-+.+++.++.++.. +.|++||||.++++.+++|+++++++|+|.+.+.
T Consensus 146 R~~PilLLDEPFsALdP~LR~eMl~Lv~~l~~E~~~TllmVTH~~~Da~~ia~~~~fl~~Gri~~~g~ 213 (231)
T COG3840 146 REQPILLLDEPFSALDPALRAEMLALVSQLCDERKMTLLMVTHHPEDAARIADRVVFLDNGRIAAQGS 213 (231)
T ss_pred ccCCeEEecCchhhcCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhhhceEEEeCCEEEeecc
Confidence 99999999999999999999999999999964 4899999999999999999999999999987653
|
|
| >TIGR02211 LolD_lipo_ex lipoprotein releasing system, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-54 Score=366.32 Aligned_cols=216 Identities=31% Similarity=0.461 Sum_probs=178.5
Q ss_pred eEEEEeEEEECCCC--ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGT--QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 17 ~l~~~~l~~~y~~~--~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
+|+++|++++|++. .+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.......
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~ 80 (221)
T TIGR02211 1 LLKCENLGKRYQEGKLDTRVLKGVSLSIGKGEIVAIVGSSGSGKSTLLHLLGGLDNPTSGEVLFNGQSLSKLSSNERAKL 80 (221)
T ss_pred CEEEEeeeEEccCCCcceEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCHhHHHHH
Confidence 47899999999642 1469999999999999999999999999999999999999999999999988754221100001
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
++++++|+||++. +++..|++||+.+........ .......+.++++.+|+.+. .++++.+|||||||||+||||
T Consensus 81 ~~~~i~~v~q~~~-~~~~~tv~~~l~~~~~~~~~~---~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrv~lara 155 (221)
T TIGR02211 81 RNKKLGFIYQFHH-LLPDFTALENVAMPLLIGKKS---VKEAKERAYEMLEKVGLEHR-INHRPSELSGGERQRVAIARA 155 (221)
T ss_pred HHhcEEEEecccc-cCCCCcHHHHHHHHHHhcCCC---HHHHHHHHHHHHHHcCChhh-hhCChhhCCHHHHHHHHHHHH
Confidence 1257999999974 566789999998742111111 12233457789999999875 699999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEE
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFL 238 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~ 238 (245)
|+.+|++|||||||+|||+.+++.+.++|+++.+ +.|||++|||++++. .||++++|++|+++
T Consensus 156 l~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~-~~d~v~~l~~G~i~ 220 (221)
T TIGR02211 156 LVNQPSLVLADEPTGNLDNNNAKIIFDLMLELNRELNTSFLVVTHDLELAK-KLDRVLEMKDGQLF 220 (221)
T ss_pred HhCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHh-hcCEEEEEeCCEec
Confidence 9999999999999999999999999999999853 589999999999886 48999999999875
|
This model represents LolD, a member of the ABC transporter family (pfam00005). LolD is involved in localization of lipoproteins in some bacteria. It works with a transmembrane protein LolC, which in some species is a paralogous pair LolC and LolE. Depending on whether the residue immediately following the new, modified N-terminal Cys residue, the nascent lipoprotein may be carried further by LolA and LolB to the outer membrane, or remain at the inner membrane. The top scoring proteins excluded by this model include homologs from the archaeal genus Methanosarcina. |
| >TIGR03522 GldA_ABC_ATP gliding motility-associated ABC transporter ATP-binding subunit GldA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-54 Score=381.89 Aligned_cols=213 Identities=25% Similarity=0.405 Sum_probs=184.7
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
+++++|++++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++.... ...+
T Consensus 2 ~l~~~~l~~~~~~--~~~l~~is~~i~~Gei~~l~G~NGaGKTTLl~~l~Gl~~~~~G~i~i~g~~~~~~~-----~~~~ 74 (301)
T TIGR03522 2 SIRVSSLTKLYGT--QNALDEVSFEAQKGRIVGFLGPNGAGKSTTMKIITGYLPPDSGSVQVCGEDVLQNP-----KEVQ 74 (301)
T ss_pred EEEEEEEEEEECC--EEEEEEeEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCh-----HHHH
Confidence 5899999999964 56999999999999999999999999999999999999999999999998874321 1235
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
+++||+||++. +++.+|+.||+.+.... ... .......++.++++.+|+.+. .++++.+||||||||++|||||+
T Consensus 75 ~~ig~~~q~~~-l~~~~tv~e~l~~~~~~-~~~--~~~~~~~~~~~~l~~~gl~~~-~~~~~~~LS~G~~qrv~la~al~ 149 (301)
T TIGR03522 75 RNIGYLPEHNP-LYLDMYVREYLQFIAGI-YGM--KGQLLKQRVEEMIELVGLRPE-QHKKIGQLSKGYRQRVGLAQALI 149 (301)
T ss_pred hceEEecCCCC-CCCCCcHHHHHHHHHHH-cCC--CHHHHHHHHHHHHHHCCCchH-hcCchhhCCHHHHHHHHHHHHHh
Confidence 67999999984 66778999999864211 111 112234467889999999875 69999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
.+|++|||||||+|||+.+++.++++|++++++.|||++||+++++.++|||+++|++|+++..+
T Consensus 150 ~~p~lliLDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sH~l~~~~~~~d~i~~l~~G~i~~~g 214 (301)
T TIGR03522 150 HDPKVLILDEPTTGLDPNQLVEIRNVIKNIGKDKTIILSTHIMQEVEAICDRVIIINKGKIVADK 214 (301)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999976799999999999999999999999999998754
|
Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldA is an ABC transporter ATP-binding protein (pfam00005) linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. Knockouts of GldA abolish the gliding phenotype. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility. |
| >TIGR02315 ABC_phnC phosphonate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-54 Score=370.94 Aligned_cols=221 Identities=28% Similarity=0.406 Sum_probs=183.3
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
||+++|++++|+. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... ...++
T Consensus 1 ~l~~~~l~~~~~~-~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~-~~~~~ 78 (243)
T TIGR02315 1 MLEVENLSKVYPN-GKQALKNINLNINPGEFVAIIGPSGAGKSTLLRCINRLVEPSSGSILLEGTDITKLRGKK-LRKLR 78 (243)
T ss_pred CeEEEeeeeecCC-CcceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCccEEEECCEEhhhCCHHH-HHHHH
Confidence 5889999999962 246999999999999999999999999999999999999999999999998874321100 01124
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCC---C-c-hhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQS---G-S-IQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLAL 171 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~---~-~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~i 171 (245)
++++|+||++. +++..|+.+|+.++..... . . ........+++.++++.+++.+. .++++.+|||||||||+|
T Consensus 79 ~~i~~v~q~~~-~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgG~~qrv~l 156 (243)
T TIGR02315 79 RRIGMIFQHYN-LIERLTVLENVLHGRLGYKPTWRSLLGRFSEEDKERALSALERVGLADK-AYQRADQLSGGQQQRVAI 156 (243)
T ss_pred hheEEEcCCCc-ccccccHHHHHhhcccccccchhhhhccccHHHHHHHHHHHHHcCcHhh-hcCCcccCCHHHHHHHHH
Confidence 67999999985 5667899999987532110 0 0 00012234567888999999865 699999999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-c-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 172 AIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLK-K-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 172 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||||+.+|++|||||||+|||+.+++.+.++|+++. + ++|||++|||++++.++||++++|++|+++..+
T Consensus 157 a~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~ 228 (243)
T TIGR02315 157 ARALAQQPDLILADEPIASLDPKTSKQVMDYLKRINKEDGITVIINLHQVDLAKKYADRIVGLKAGEIVFDG 228 (243)
T ss_pred HHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEECCEEEecC
Confidence 999999999999999999999999999999999985 3 589999999999999999999999999998654
|
Phosphonates are a class of phosphorus-containing organic compound with a stable direct C-P bond rather than a C-O-P linkage. A number of bacterial species have operons, typically about 14 genes in size, with genes for ATP-dependent transport of phosphonates, degradation, and regulation of the expression of the system. Members of this protein family are the ATP-binding cassette component of tripartite ABC transporters of phosphonates. |
| >PRK11831 putative ABC transporter ATP-binding protein YrbF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-54 Score=374.40 Aligned_cols=220 Identities=30% Similarity=0.457 Sum_probs=184.6
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
+++|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++....... ...
T Consensus 5 ~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~-~~~ 81 (269)
T PRK11831 5 ANLVDMRGVSFTRGN--RCIFDNISLTVPRGKITAIMGPSGIGKTTLLRLIGGQIAPDHGEILFDGENIPAMSRSR-LYT 81 (269)
T ss_pred cceEEEeCeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccChhh-HHH
Confidence 457999999999964 46999999999999999999999999999999999999999999999998775322110 011
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
.+++++|+||++. +++..|+.||+.++...... . ........+.++++.+++.+. +++++.+|||||||||+||||
T Consensus 82 ~~~~i~~v~q~~~-~~~~~tv~enl~~~~~~~~~-~-~~~~~~~~~~~~l~~~gl~~~-~~~~~~~LSgGq~qrv~lara 157 (269)
T PRK11831 82 VRKRMSMLFQSGA-LFTDMNVFDNVAYPLREHTQ-L-PAPLLHSTVMMKLEAVGLRGA-AKLMPSELSGGMARRAALARA 157 (269)
T ss_pred HhhcEEEEecccc-cCCCCCHHHHHHHHHHHccC-C-CHHHHHHHHHHHHHHcCChhh-hhCChhhCCHHHHHHHHHHHH
Confidence 2457999999974 56678999999875211100 0 112233456788999999875 699999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|+.+|++|||||||+|||+.+++.++++|+++.+ +.|||++|||++++..+||++++|++|+++..+
T Consensus 158 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~g 226 (269)
T PRK11831 158 IALEPDLIMFDEPFVGQDPITMGVLVKLISELNSALGVTCVVVSHDVPEVLSIADHAYIVADKKIVAHG 226 (269)
T ss_pred HhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhhCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999853 589999999999999999999999999998654
|
|
| >cd03225 ABC_cobalt_CbiO_domain1 Domain I of the ABC component of a cobalt transport family found in bacteria, archaea, and eukaryota | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-54 Score=363.58 Aligned_cols=210 Identities=39% Similarity=0.609 Sum_probs=176.6
Q ss_pred EEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCc
Q 035832 19 EVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEK 98 (245)
Q Consensus 19 ~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ 98 (245)
+++|++++|++..+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..+++.
T Consensus 1 ~~~~l~~~~~~~~~~il~~vs~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~----~~~~~~ 76 (211)
T cd03225 1 ELKNLSFSYPDGARPALDDISLTIKKGEFVLIVGPNGSGKSTLLRLLNGLLGPTSGEVLVDGKDLTKLSL----KELRRK 76 (211)
T ss_pred CceeEEEecCCCCeeeecceEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccCCH----HHHHhh
Confidence 4789999996422469999999999999999999999999999999999999999999999987743211 123467
Q ss_pred EEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhC
Q 035832 99 VGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQV 178 (245)
Q Consensus 99 i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~ 178 (245)
++|+||++...++..|+.+|+.++.... .. ........+.++++.+++.+. .++++.+|||||||||+|||||+.+
T Consensus 77 i~~~~q~~~~~~~~~t~~~~l~~~~~~~-~~--~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgG~~qrv~laral~~~ 152 (211)
T cd03225 77 VGLVFQNPDDQFFGPTVEEEVAFGLENL-GL--PEEEIEERVEEALELVGLEGL-RDRSPFTLSGGQKQRVAIAGVLAMD 152 (211)
T ss_pred ceEEecChhhhcCCCcHHHHHHHHHHHc-CC--CHHHHHHHHHHHHHHcCcHhh-hcCCcccCCHHHHHHHHHHHHHhcC
Confidence 9999999743355789999998752111 00 112233457788999999864 6999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCe
Q 035832 179 PDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGG 236 (245)
Q Consensus 179 p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~ 236 (245)
|++|||||||+|||+.+++.+++.|+++.+ +.|||++|||++++..+||++++|++|+
T Consensus 153 p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~ 211 (211)
T cd03225 153 PDILLLDEPTAGLDPAGRRELLELLKKLKAEGKTIIIVTHDLDLLLELADRVIVLEDGK 211 (211)
T ss_pred CCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCC
Confidence 999999999999999999999999999864 6899999999999999999999999885
|
The transition metal cobalt is an essential component of many enzymes and must be transported into cells in appropriate amounts when needed. This ABC transport system of the CbiMNQO family is involved in cobalt transport in association with the cobalamin (vitamin B12) biosynthetic pathways. Most of cobalt (Cbi) transport systems possess a separate CbiN component, the cobalt-binding periplasmic protein, and they are encoded by the conserved gene cluster cbiMNQO. Both the CbiM and CbiQ proteins are integral cytoplasmic membrane proteins, and the CbiO protein has the linker peptide and the Walker A and B motifs commonly found in the ATPase components of the ABC-type transport systems. |
| >PRK11022 dppD dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-54 Score=384.63 Aligned_cols=223 Identities=25% Similarity=0.345 Sum_probs=183.6
Q ss_pred eEEEEeEEEECCCCc--cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC----CCcceEEEcCccCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQ--VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK----PTSGSINIRGYNNDGEPNNS 90 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~--~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~----p~~G~i~~~g~~~~~~~~~~ 90 (245)
+|+++||++.|+... ..+|+||||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.......
T Consensus 3 ~L~v~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~lvG~sGsGKSTL~~~l~Gll~~~~~~~~G~i~~~G~~i~~~~~~~ 82 (326)
T PRK11022 3 LLNVDKLSVHFGDESAPFRAVDRISYSVKQGEVVGIVGESGSGKSVSSLAIMGLIDYPGRVMAEKLEFNGQDLQRISEKE 82 (326)
T ss_pred eEEEeCeEEEECCCCccEEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCCcceEEEECCEECCcCCHHH
Confidence 699999999996422 369999999999999999999999999999999999998 48999999999885433211
Q ss_pred CCCCCCCcEEEEecCCCC-CCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC--ccCCCCCCCCChHHHH
Q 035832 91 PEPLPPEKVGIVFQFPER-YFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG--TSLDKDPHSLSGGYKR 167 (245)
Q Consensus 91 ~~~~~~~~i~~v~Q~~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~~LSgGqkq 167 (245)
....+++.|+|+||++.. +.+.+++.+++.......... ..++..+++.++++.+||.+ ..+++++++|||||||
T Consensus 83 ~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~l~~~~~~--~~~~~~~~~~~~L~~~gL~~~~~~l~~~p~~LSgGq~Q 160 (326)
T PRK11022 83 RRNLVGAEVAMIFQDPMTSLNPCYTVGFQIMEAIKVHQGG--NKKTRRQRAIDLLNQVGIPDPASRLDVYPHQLSGGMSQ 160 (326)
T ss_pred HHHHhCCCEEEEecCchhhcCCcCCHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCHHHHH
Confidence 112234579999999853 445678887775532111011 12334556889999999964 2358999999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 168 RLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 168 rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||+|||||+.+|++||+||||++||+.++.+++++|+++++ +.|+|+||||++.+..+||||++|.+|+++..+
T Consensus 161 Rv~iArAL~~~P~llilDEPts~LD~~~~~~il~lL~~l~~~~g~til~iTHdl~~~~~~adri~vm~~G~ive~g 236 (326)
T PRK11022 161 RVMIAMAIACRPKLLIADEPTTALDVTIQAQIIELLLELQQKENMALVLITHDLALVAEAAHKIIVMYAGQVVETG 236 (326)
T ss_pred HHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999964 589999999999999999999999999998764
|
|
| >PRK10584 putative ABC transporter ATP-binding protein YbbA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-54 Score=365.54 Aligned_cols=220 Identities=30% Similarity=0.400 Sum_probs=181.8
Q ss_pred cceEEEEeEEEECCCCc--cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQ--VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPE 92 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~--~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 92 (245)
+++|+++|++++|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.........
T Consensus 4 ~~~l~~~~l~~~~~~~~~~~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 83 (228)
T PRK10584 4 ENIVEVHHLKKSVGQGEHELSILTGVELVVKRGETIALIGESGSGKSTLLAILAGLDDGSSGEVSLVGQPLHQMDEEARA 83 (228)
T ss_pred CceEEEeeeEEEccCCCcceEEEeccEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeeEEECCEEcccCCHHHHH
Confidence 35799999999996421 2589999999999999999999999999999999999999999999999877532211000
Q ss_pred CCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHH
Q 035832 93 PLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALA 172 (245)
Q Consensus 93 ~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iA 172 (245)
..++++++|+||++. +++..|+.||+.++.... .. ......+++.++++.+++.+. .++++.+||||||||++||
T Consensus 84 ~~~~~~i~~~~q~~~-l~~~~tv~~~l~~~~~~~-~~--~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~Ge~qrl~la 158 (228)
T PRK10584 84 KLRAKHVGFVFQSFM-LIPTLNALENVELPALLR-GE--SSRQSRNGAKALLEQLGLGKR-LDHLPAQLSGGEQQRVALA 158 (228)
T ss_pred HHHhheEEEEEcccc-cCCCcCHHHHHHHHHHhc-CC--CHHHHHHHHHHHHHHcCCHhH-hhCChhhCCHHHHHHHHHH
Confidence 112357999999984 566789999998752111 11 112334567889999999875 6899999999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-c-CceEEEEecChhHHHhhccEEEEEeCCeEEEe
Q 035832 173 IQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLK-K-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240 (245)
Q Consensus 173 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~ 240 (245)
|||+.+|++|||||||+|||+.+++.++++|++++ + +.|||++|||++++. .||++++|++|+++..
T Consensus 159 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~-~~d~i~~l~~g~i~~~ 227 (228)
T PRK10584 159 RAFNGRPDVLFADEPTGNLDRQTGDKIADLLFSLNREHGTTLILVTHDLQLAA-RCDRRLRLVNGQLQEE 227 (228)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEec
Confidence 99999999999999999999999999999999985 3 589999999999885 5999999999998753
|
|
| >PRK10908 cell division protein FtsE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-54 Score=364.59 Aligned_cols=217 Identities=25% Similarity=0.430 Sum_probs=182.3
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
||+++|++++|++ .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++....... ...++
T Consensus 1 ~l~~~~l~~~~~~-~~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~-~~~~~ 78 (222)
T PRK10908 1 MIRFEHVSKAYLG-GRQALQGVTFHMRPGEMAFLTGHSGAGKSTLLKLICGIERPSAGKIWFSGHDITRLKNRE-VPFLR 78 (222)
T ss_pred CEEEEeeEEEecC-CCeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCChhH-HHHHH
Confidence 4899999999942 246999999999999999999999999999999999999999999999998874321110 00124
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
+.++|+||++. +++..|+.||+.++.... .. . .......+.++++.+++.+. .++++.+||||||||++|||||+
T Consensus 79 ~~i~~~~q~~~-~~~~~tv~~~l~~~~~~~-~~-~-~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrv~laral~ 153 (222)
T PRK10908 79 RQIGMIFQDHH-LLMDRTVYDNVAIPLIIA-GA-S-GDDIRRRVSAALDKVGLLDK-AKNFPIQLSGGEQQRVGIARAVV 153 (222)
T ss_pred hheEEEecCcc-ccccccHHHHHHhHHHhc-CC-C-HHHHHHHHHHHHHHcCChhh-hhCCchhCCHHHHHHHHHHHHHH
Confidence 67999999984 566789999998752111 11 1 12233457788999999875 69999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEe
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~ 240 (245)
.+|++|||||||++||+.+++.++++|.++++ +.|+|++|||++++..+||++++|++|+++..
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 218 (222)
T PRK10908 154 NKPAVLLADEPTGNLDDALSEGILRLFEEFNRVGVTVLMATHDIGLISRRSYRMLTLSDGHLHGG 218 (222)
T ss_pred cCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEccC
Confidence 99999999999999999999999999999864 58999999999999999999999999998754
|
|
| >cd03260 ABC_PstB_phosphate_transporter Phosphate uptake is of fundamental importance in the cell physiology of bacteria because phosphate is required as a nutrient | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-54 Score=365.57 Aligned_cols=216 Identities=31% Similarity=0.477 Sum_probs=180.6
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-----CCCcceEEEcCccCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLS-----KPTSGSINIRGYNNDGEPNNSPE 92 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~-----~p~~G~i~~~g~~~~~~~~~~~~ 92 (245)
|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|++ +|++|+|.++|+++...... .
T Consensus 1 i~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~~--~ 76 (227)
T cd03260 1 IELRDLNVYYGD--KHALKDISLDIPKGEITALIGPSGCGKSTLLRLLNRLNDLIPGAPDEGEVLLDGKDIYDLDVD--V 76 (227)
T ss_pred CEEEEEEEEcCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCCeEEEECCEEhhhcchH--H
Confidence 578999999964 46999999999999999999999999999999999999 99999999999887432100 1
Q ss_pred CCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCC--CCCCChHHHHHHH
Q 035832 93 PLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKD--PHSLSGGYKRRLA 170 (245)
Q Consensus 93 ~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~--~~~LSgGqkqrv~ 170 (245)
..++++++|+||++. ++ ..|+.||+.++.... .. ........++.++++.+|+.+. .++. +.+||||||||++
T Consensus 77 ~~~~~~i~~~~q~~~-~~-~~tv~e~l~~~~~~~-~~-~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~~~LSgG~~qrv~ 151 (227)
T cd03260 77 LELRRRVGMVFQKPN-PF-PGSIYDNVAYGLRLH-GI-KLKEELDERVEEALRKAALWDE-VKDRLHALGLSGGQQQRLC 151 (227)
T ss_pred HHHHhhEEEEecCch-hc-cccHHHHHHhHHHhc-CC-CcHHHHHHHHHHHHHHcCCChH-HhccCCcccCCHHHHHHHH
Confidence 123467999999985 55 789999998753211 10 0111234567789999999864 4565 5999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 171 LAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 171 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
|||||+.+|++|||||||+|||+.+++.++++|++++++.|||++|||++++..+||++++|++|+++..+.
T Consensus 152 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g~ 223 (227)
T cd03260 152 LARALANEPEVLLLDEPTSALDPISTAKIEELIAELKKEYTIVIVTHNMQQAARVADRTAFLLNGRLVEFGP 223 (227)
T ss_pred HHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhhCcEEEEEeccHHHHHHhCCEEEEEeCCEEEEecC
Confidence 999999999999999999999999999999999998655899999999999999999999999999987653
|
The Pst system of E. coli comprises four distinct subunits encoded by the pstS, pstA, pstB, and pstC genes. The PstS protein is a phosphate-binding protein located in the periplasmic space. P stA and PstC are hydrophobic and they form the transmembrane portion of the Pst system. PstB is the catalytic subunit, which couples the energy of ATP hydrolysis to the import of phosphate across cellular membranes through the Pst system, often referred as ABC-protein. PstB belongs to one of the largest superfamilies of proteins characterized by a highly conserved adenosine triphosphate (ATP) binding cassette (ABC), which is also a nucleotide binding domain (NBD). |
| >cd03257 ABC_NikE_OppD_transporters The ABC transporter subfamily specific for the transport of dipeptides, oligopeptides (OppD), and nickel (NikDE) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-54 Score=364.35 Aligned_cols=222 Identities=33% Similarity=0.419 Sum_probs=179.7
Q ss_pred eEEEEeEEEECCCCc--cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQ--VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~--~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
+|+++|++++|++.. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+.. ....
T Consensus 1 ~l~~~~v~~~~~~~~~~~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~-~~~~ 79 (228)
T cd03257 1 LLEVKNLSVSFPTGGGSVKALDDVSFSIKKGETLGLVGESGSGKSTLARAILGLLKPTSGSIIFDGKDLLKLSRR-LRKI 79 (228)
T ss_pred CeEEEeeeEeccCCCcceeeecCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEccccchh-hHHH
Confidence 588999999996421 2699999999999999999999999999999999999999999999999887532210 0112
Q ss_pred CCCcEEEEecCCCC-CCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPER-YFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
+++.++|+||++.. +++..|+.+|+.++........ ........+.++++.+++.....++++.+||||||||++|||
T Consensus 80 ~~~~i~~~~q~~~~~~~~~~tv~~nl~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lar 158 (228)
T cd03257 80 RRKEIQMVFQDPMSSLNPRMTIGEQIAEPLRIHGKLS-KKEARKEAVLLLLVGVGLPEEVLNRYPHELSGGQRQRVAIAR 158 (228)
T ss_pred hhccEEEEecCchhhcCCcCCHHHHHHHHHHhccCCc-HHHHHHHHHHHHHHHCCCChhHhhCCchhcCHHHHHHHHHHH
Confidence 35689999999842 3456899999986521111010 111111223578899999532368999999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEe
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~ 240 (245)
||+.+|++|||||||+|||+.+++.+.+.|+++.+ +.|||++|||++++..+||++++|++|+++..
T Consensus 159 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 227 (228)
T cd03257 159 ALALNPKLLIADEPTSALDVSVQAQILDLLKKLQEELGLTLLFITHDLGVVAKIADRVAVMYAGKIVEE 227 (228)
T ss_pred HHhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCeEEEEeCCEEEec
Confidence 99999999999999999999999999999999864 68999999999999999999999999998754
|
The NikABCDE system of E. coli belongs to this family and is composed of the periplasmic binding protein NikA, two integral membrane components (NikB and NikC), and two ATPase (NikD and NikE). The NikABCDE transporter is synthesized under anaerobic conditions to meet the increased demand for nickel resulting from hydrogenase synthesis. The molecular mechanism of nickel uptake in many bacteria and most archaea is not known. Many other members of this ABC family are also involved in the uptake of dipeptides and oligopeptides. The oligopeptide transport system (Opp) is a five-component ABC transport composed of a membrane-anchored substrate binding proteins (SRP), OppA, two transmembrane proteins, OppB and OppC, and two ATP-binding domains, OppD and OppF. |
| >cd03264 ABC_drug_resistance_like ABC-type multidrug transport system, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-54 Score=362.38 Aligned_cols=210 Identities=28% Similarity=0.411 Sum_probs=180.3
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|++++|++ +++++|+||++++| +++|+||||||||||+++|+|+++|++|+|.++|+++.... ...++
T Consensus 1 i~~~~~~~~~~~--~~~l~~vs~~i~~g-~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~-----~~~~~ 72 (211)
T cd03264 1 LQLENLTKRYGK--KRALDGVSLTLGPG-MYGLLGPNGAGKTTLMRILATLTPPSSGTIRIDGQDVLKQP-----QKLRR 72 (211)
T ss_pred CEEEEEEEEECC--EEEEcceeEEEcCC-cEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCCccccch-----HHHHh
Confidence 578999999964 46999999999999 99999999999999999999999999999999998764321 12356
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ 177 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~ 177 (245)
.++|+||++. +++..|+.||+.+..... .. ......+.+.++++.+++.+. .++++.+||||||||++|||||+.
T Consensus 73 ~i~~~~q~~~-~~~~~tv~~~l~~~~~~~-~~--~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrv~la~al~~ 147 (211)
T cd03264 73 RIGYLPQEFG-VYPNFTVREFLDYIAWLK-GI--PSKEVKARVDEVLELVNLGDR-AKKKIGSLSGGMRRRVGIAQALVG 147 (211)
T ss_pred heEEecCCCc-ccccCCHHHHHHHHHHHh-CC--CHHHHHHHHHHHHHHCCCHHH-HhCchhhCCHHHHHHHHHHHHHhc
Confidence 7999999985 566789999998742111 00 112234467889999999875 689999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEe
Q 035832 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~ 240 (245)
+|+++||||||+|||+.+++.+.++|++++++.|||++|||++++..+||++++|++|+++..
T Consensus 148 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~g~i~~~ 210 (211)
T cd03264 148 DPSILIVDEPTAGLDPEERIRFRNLLSELGEDRIVILSTHIVEDVESLCNQVAVLNKGKLVFE 210 (211)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEec
Confidence 999999999999999999999999999997678999999999999999999999999998764
|
The biological function of this family is not well characterized, but display ABC domains similar to members of ABCA subfamily. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03258 ABC_MetN_methionine_transporter MetN (also known as YusC) is an ABC-type transporter encoded by metN of the metNPQ operon in Bacillus subtilis that is involved in methionine transport | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-54 Score=367.40 Aligned_cols=219 Identities=29% Similarity=0.466 Sum_probs=183.5
Q ss_pred eEEEEeEEEECCCC--ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGT--QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 17 ~l~~~~l~~~y~~~--~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
||+++|++++|++. ..++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++....... ...
T Consensus 1 ~i~~~~l~~~~~~~~~~~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~-~~~ 79 (233)
T cd03258 1 MIELKNVSKVFGDTGGKVTALKDVSLSVPKGEIFGIIGRSGAGKSTLIRCINGLERPTSGSVLVDGTDLTLLSGKE-LRK 79 (233)
T ss_pred CeEEecceEEccCCCCceeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcccCCHHH-HHH
Confidence 58999999999642 126999999999999999999999999999999999999999999999998874321100 001
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
.++.++|+||++. +++.+|+.||+.++.... .. ........+.++++.+++.+. .++++.+||||||||++||||
T Consensus 80 ~~~~i~~~~q~~~-~~~~~t~~e~l~~~~~~~-~~--~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrv~la~a 154 (233)
T cd03258 80 ARRRIGMIFQHFN-LLSSRTVFENVALPLEIA-GV--PKAEIEERVLELLELVGLEDK-ADAYPAQLSGGQKQRVGIARA 154 (233)
T ss_pred HHhheEEEccCcc-cCCCCcHHHHHHHHHHHc-CC--CHHHHHHHHHHHHHHCCChhh-hhcChhhCCHHHHHHHHHHHH
Confidence 2457999999985 566789999998752211 11 112234457889999999875 689999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-c-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLK-K-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|+.+|+++||||||+|||+.+++.++++|+++. + +.|||++||+++++..+||++++|++|+++..+
T Consensus 155 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~ 223 (233)
T cd03258 155 LANNPKVLLCDEATSALDPETTQSILALLRDINRELGLTIVLITHEMEVVKRICDRVAVMEKGEVVEEG 223 (233)
T ss_pred HhcCCCEEEecCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEec
Confidence 999999999999999999999999999999985 3 689999999999999999999999999998754
|
Other members of this system include the MetP permease and the MetQ substrate binding protein. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03218 ABC_YhbG The ABC transporters belonging to the YhbG family are similar to members of the Mj1267_LivG family, which is involved in the transport of branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-54 Score=365.17 Aligned_cols=214 Identities=29% Similarity=0.415 Sum_probs=181.9
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|++++|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...... ...++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~---~~~~~ 75 (232)
T cd03218 1 LRAENLSKRYGK--RKVVNGVSLSVKQGEIVGLLGPNGAGKTTTFYMIVGLVKPDSGKILLDGQDITKLPMH---KRARL 75 (232)
T ss_pred CeEEEEEEEeCC--EEeeccceeEecCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEecccCCHh---HHHhc
Confidence 578999999964 4699999999999999999999999999999999999999999999999876432211 11235
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ 177 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~ 177 (245)
.++|+||++. +++..|+.+|+.++.... .. ........+.++++.+++.+. .++.+.+||||||||++|||||+.
T Consensus 76 ~i~~~~q~~~-~~~~~tv~~~l~~~~~~~-~~--~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrl~la~al~~ 150 (232)
T cd03218 76 GIGYLPQEAS-IFRKLTVEENILAVLEIR-GL--SKKEREEKLEELLEEFHITHL-RKSKASSLSGGERRRVEIARALAT 150 (232)
T ss_pred cEEEecCCcc-ccccCcHHHHHHHHHHhc-CC--CHHHHHHHHHHHHHHcCChhh-hhCChhhCCHHHHHHHHHHHHHhc
Confidence 6999999984 666789999998753211 11 112233457789999999875 699999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+|++|||||||+|||+.+++.++++|+++.+ +.|||++|||++++..+||++++|++|+++..+
T Consensus 151 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 215 (232)
T cd03218 151 NPKFLLLDEPFAGVDPIAVQDIQKIIKILKDRGIGVLITDHNVRETLSITDRAYIIYEGKVLAEG 215 (232)
T ss_pred CCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEEe
Confidence 9999999999999999999999999999864 689999999999999999999999999998654
|
The genes yhbG and yhbN are located in a single operon and may function together in cell envelope during biogenesis. YhbG is the putative ATP-binding cassette component and YhbN is the putative periplasmic-binding protein. Depletion of each gene product leads to growth arrest, irreversible cell damage and loss of viability in E. coli. The YhbG homolog (NtrA) is essential in Rhizobium meliloti, a symbiotic nitrogen-fixing bacterium. |
| >PRK13636 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-54 Score=375.95 Aligned_cols=220 Identities=31% Similarity=0.477 Sum_probs=185.7
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
+++|+++|++++|++ .+.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... ....
T Consensus 3 ~~~l~~~~l~~~~~~-~~~~l~~vs~~i~~Ge~~~i~G~nGaGKSTLl~~i~Gl~~p~~G~i~i~g~~~~~~~~--~~~~ 79 (283)
T PRK13636 3 DYILKVEELNYNYSD-GTHALKGININIKKGEVTAILGGNGAGKSTLFQNLNGILKPSSGRILFDGKPIDYSRK--GLMK 79 (283)
T ss_pred CceEEEEeEEEEeCC-CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCccEEEECCEECCCCcc--hHHH
Confidence 458999999999963 2469999999999999999999999999999999999999999999999988742111 0112
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
+++.+||+||++...++..|+.||+.++.... .. .......++.++++.+|+.+. .++++.+||||||||++||||
T Consensus 80 ~~~~ig~v~q~~~~~~~~~tv~e~l~~~~~~~-~~--~~~~~~~~~~~~l~~~gL~~~-~~~~~~~LS~G~~qrl~lara 155 (283)
T PRK13636 80 LRESVGMVFQDPDNQLFSASVYQDVSFGAVNL-KL--PEDEVRKRVDNALKRTGIEHL-KDKPTHCLSFGQKKRVAIAGV 155 (283)
T ss_pred HHhhEEEEecCcchhhccccHHHHHHhHHHHc-CC--CHHHHHHHHHHHHHHCCChhh-hhCCcccCCHHHHHHHHHHHH
Confidence 34679999999753445689999998752211 11 122234467889999999875 799999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|+.+|++|||||||+|||+.++..++++|+++.+ +.|||++|||++++..+|||+++|++|+++..+
T Consensus 156 L~~~p~lLilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvsH~~~~~~~~~dri~~l~~G~i~~~g 224 (283)
T PRK13636 156 LVMEPKVLVLDEPTAGLDPMGVSEIMKLLVEMQKELGLTIIIATHDIDIVPLYCDNVFVMKEGRVILQG 224 (283)
T ss_pred HHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999864 689999999999999999999999999998764
|
|
| >PRK13635 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-54 Score=374.86 Aligned_cols=218 Identities=37% Similarity=0.572 Sum_probs=185.4
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
+++|+++||++.|++..+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..
T Consensus 3 ~~~l~~~~l~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~nGaGKSTLl~~i~G~~~p~~G~i~~~g~~i~~~~~----~~ 78 (279)
T PRK13635 3 EEIIRVEHISFRYPDAATYALKDVSFSVYEGEWVAIVGHNGSGKSTLAKLLNGLLLPEAGTITVGGMVLSEETV----WD 78 (279)
T ss_pred CceEEEEEEEEEeCCCCccceeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCcH----HH
Confidence 45799999999996433569999999999999999999999999999999999999999999999998753221 12
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
+++.+||+||++..+++..|+.||+.++.... .. ..+....++.++++.+||.+. .++++.+|||||||||+||||
T Consensus 79 ~~~~i~~~~q~~~~~~~~~tv~enl~~~~~~~-~~--~~~~~~~~~~~~l~~~gL~~~-~~~~~~~LS~G~~qrv~lara 154 (279)
T PRK13635 79 VRRQVGMVFQNPDNQFVGATVQDDVAFGLENI-GV--PREEMVERVDQALRQVGMEDF-LNREPHRLSGGQKQRVAIAGV 154 (279)
T ss_pred HhhheEEEEeCHHHhcccccHHHHHhhhHhhC-CC--CHHHHHHHHHHHHHHcCChhh-hhCCcccCCHHHHHHHHHHHH
Confidence 24679999999743456789999998752211 11 122334567889999999875 799999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|+.+|++|||||||+|||+.++..++++|+++.+ +.|||++|||++++. .||++++|++|+++..+
T Consensus 155 l~~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~~~~tilivsH~~~~~~-~~d~i~~l~~G~i~~~g 222 (279)
T PRK13635 155 LALQPDIIILDEATSMLDPRGRREVLETVRQLKEQKGITVLSITHDLDEAA-QADRVIVMNKGEILEEG 222 (279)
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-cCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999864 589999999999986 59999999999998654
|
|
| >TIGR03411 urea_trans_UrtD urea ABC transporter, ATP-binding protein UrtD | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-54 Score=365.72 Aligned_cols=219 Identities=27% Similarity=0.457 Sum_probs=184.9
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
++|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ....
T Consensus 1 ~~i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~---~~~~ 75 (242)
T TIGR03411 1 PILYLEGLSVSFDG--FKALNDLSLYVDPGELRVIIGPNGAGKTTMMDVITGKTRPDEGSVLFGGTDLTGLPE---HQIA 75 (242)
T ss_pred CeEEEEeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECCeecCCCCH---HHHH
Confidence 36899999999964 469999999999999999999999999999999999999999999999987643211 1112
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCC----c-hhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSG----S-IQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLA 170 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~----~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ 170 (245)
++.++|+||++. +++..|+.||+.++...... . ..........+.++++.+|+.+. .++++.+|||||+|||+
T Consensus 76 ~~~i~~~~q~~~-~~~~~tv~~nl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~Ge~qrv~ 153 (242)
T TIGR03411 76 RAGIGRKFQKPT-VFENLTVFENLELALPRDKSVFASLFFRLSAEEKDRIEEVLETIGLADE-ADRLAGLLSHGQKQWLE 153 (242)
T ss_pred hcCeeEeccccc-cCCCCCHHHHHHHhhhcccccccccccccHHHHHHHHHHHHHHcCCchh-hcCChhhCCHHHHHHHH
Confidence 356999999984 66778999999875321100 0 00112234567889999999875 69999999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 171 LAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 171 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|||||+.+|++|||||||+|||+.+++.++++|+++.++.|||++||+++++..+||++++|++|+++..+
T Consensus 154 laral~~~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~~~~~~ 224 (242)
T TIGR03411 154 IGMLLMQDPKLLLLDEPVAGMTDEETEKTAELLKSLAGKHSVVVVEHDMEFVRSIADKVTVLHQGSVLAEG 224 (242)
T ss_pred HHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCeEEeeC
Confidence 99999999999999999999999999999999999976789999999999999999999999999998654
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >PRK11308 dppF dipeptide transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-54 Score=382.98 Aligned_cols=224 Identities=28% Similarity=0.379 Sum_probs=186.1
Q ss_pred cceEEEEeEEEECCC--------CccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCC
Q 035832 15 YSCLEVRDVSYRPPG--------TQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGE 86 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~--------~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~ 86 (245)
+++|+++||++.|+. +...+|+||||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|+++...
T Consensus 3 ~~~l~v~nl~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~IvG~sGsGKSTLl~~l~gl~~p~~G~i~~~g~~l~~~ 82 (327)
T PRK11308 3 QPLLQAIDLKKHYPVKRGLFKPERLVKALDGVSFTLERGKTLAVVGESGCGKSTLARLLTMIETPTGGELYYQGQDLLKA 82 (327)
T ss_pred CceEEEeeeEEEEcCCCCccccCCceeEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHHcCCCCCCcEEEECCEEcCcC
Confidence 468999999999962 124699999999999999999999999999999999999999999999999987543
Q ss_pred CCCCCCCCCCCcEEEEecCCC-CCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHH
Q 035832 87 PNNSPEPLPPEKVGIVFQFPE-RYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGY 165 (245)
Q Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq 165 (245)
+.... ..++++|+||||++. .+.+.+++.+++.......... .......++.++++.+||.+..+++++++|||||
T Consensus 83 ~~~~~-~~~r~~i~~v~Q~~~~~l~p~~~v~~~l~~~~~~~~~~--~~~~~~~~~~~~l~~~gL~~~~~~~~p~~LSgGq 159 (327)
T PRK11308 83 DPEAQ-KLLRQKIQIVFQNPYGSLNPRKKVGQILEEPLLINTSL--SAAERREKALAMMAKVGLRPEHYDRYPHMFSGGQ 159 (327)
T ss_pred CHHHH-HHHhCCEEEEEcCchhhcCCccCHHHHHHHHHHHccCC--CHHHHHHHHHHHHHHCCCChHHhcCCCccCCHHH
Confidence 21111 113467999999984 2455679999886542111011 1223445688999999996433699999999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 166 KRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 166 kqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||||+|||||+.+|++||+||||++||+.++.+++++|.++++ +.|||+||||++.+..+||+|++|++|+++..+
T Consensus 160 ~QRv~iArAL~~~P~lLilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~adrv~vm~~G~ive~g 237 (327)
T PRK11308 160 RQRIAIARALMLDPDVVVADEPVSALDVSVQAQVLNLMMDLQQELGLSYVFISHDLSVVEHIADEVMVMYLGRCVEKG 237 (327)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999999999999864 689999999999999999999999999998765
|
|
| >PRK11247 ssuB aliphatic sulfonates transport ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-54 Score=369.12 Aligned_cols=206 Identities=33% Similarity=0.474 Sum_probs=181.1
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
.++|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..
T Consensus 10 ~~~l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~I~G~NGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~--------- 78 (257)
T PRK11247 10 GTPLLLNAVSKRYGE--RTVLNQLDLHIPAGQFVAVVGRSGCGKSTLLRLLAGLETPSAGELLAGTAPLAE--------- 78 (257)
T ss_pred CCcEEEEEEEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEHHH---------
Confidence 467999999999964 469999999999999999999999999999999999999999999998876421
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
.+++++|+||++. +++..|+.||+.++.. . ....++.++++.+++.+. .++++.+||||||||++||||
T Consensus 79 ~~~~i~~v~q~~~-l~~~~tv~enl~~~~~----~-----~~~~~~~~~l~~~gl~~~-~~~~~~~LSgGqkqrl~lara 147 (257)
T PRK11247 79 AREDTRLMFQDAR-LLPWKKVIDNVGLGLK----G-----QWRDAALQALAAVGLADR-ANEWPAALSGGQKQRVALARA 147 (257)
T ss_pred hhCceEEEecCcc-CCCCCcHHHHHHhccc----c-----hHHHHHHHHHHHcCChhH-hcCChhhCCHHHHHHHHHHHH
Confidence 2467999999984 5666899999987521 0 012356788999999875 699999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-c-CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLK-K-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
|+.+|++|||||||+|||+.++..+.++|.++. + +.|||++|||++++..+||++++|++|+++.+..
T Consensus 148 L~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tviivsHd~~~~~~~~d~i~~l~~G~i~~~~~ 217 (257)
T PRK11247 148 LIHRPGLLLLDEPLGALDALTRIEMQDLIESLWQQHGFTVLLVTHDVSEAVAMADRVLLIEEGKIGLDLT 217 (257)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeecc
Confidence 999999999999999999999999999999984 3 5899999999999999999999999999987653
|
|
| >cd03256 ABC_PhnC_transporter ABC-type phosphate/phosphonate transport system | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-54 Score=367.61 Aligned_cols=220 Identities=30% Similarity=0.417 Sum_probs=182.2
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|++++|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...+... ....++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~~-~~~~~~ 78 (241)
T cd03256 1 IEVENLSKTYPNG-KKALKDVSLSINPGEFVALIGPSGAGKSTLLRCLNGLVEPTSGSVLIDGTDINKLKGKA-LRQLRR 78 (241)
T ss_pred CEEeeEEEecCCc-cEEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEEECCEeccccCHhH-HHHHHh
Confidence 4789999999642 46999999999999999999999999999999999999999999999998875321100 011245
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCC---c--hhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHH
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSG---S--IQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALA 172 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~---~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iA 172 (245)
.++|+||++. +++..|+.+|+.++...... . ........+++.++++.+++.+. .++++.+|||||||||+||
T Consensus 79 ~i~~~~q~~~-~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrv~la 156 (241)
T cd03256 79 QIGMIFQQFN-LIERLSVLENVLSGRLGRRSTWRSLFGLFPKEEKQRALAALERVGLLDK-AYQRADQLSGGQQQRVAIA 156 (241)
T ss_pred ccEEEcccCc-ccccCcHHHHHHhhhcccchhhhhhcccCcHHHHHHHHHHHHHcCChhh-hCCCcccCCHHHHHHHHHH
Confidence 7999999984 56678999999875321000 0 00012234457788999999865 6999999999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-c-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 173 IQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLK-K-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 173 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|||+.+|++|||||||+|||+.+++.++++|+++. + +.|||++|||++++..+||++++|++|+++..+
T Consensus 157 ~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~G~i~~~~ 227 (241)
T cd03256 157 RALMQQPKLILADEPVASLDPASSRQVMDLLKRINREEGITVIVSLHQVDLAREYADRIVGLKDGRIVFDG 227 (241)
T ss_pred HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeec
Confidence 99999999999999999999999999999999985 3 689999999999999999999999999998654
|
Phosphonates are a class of organophosphorus compounds characterized by a chemically stable carbon-to-phosphorus (C-P) bond. Phosphonates are widespread among naturally occurring compounds in all kingdoms of wildlife, but only procaryotic microorganisms are able to cleave this bond. Certain bacteria such as E. coli can use alkylphosphonates as a phosphorus source. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03268 ABC_BcrA_bacitracin_resist The BcrA subfamily represents ABC transporters involved in peptide antibiotic resistance | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-54 Score=360.37 Aligned_cols=206 Identities=27% Similarity=0.438 Sum_probs=179.2
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|++++|++ +++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++... ..+++
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~------~~~~~ 72 (208)
T cd03268 1 LKTNDLTKTYGK--KRVLDDISLHVKKGEIYGFLGPNGAGKTTTMKIILGLIKPDSGEITFDGKSYQKN------IEALR 72 (208)
T ss_pred CEEEEEEEEECC--eEeEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCCcccch------HHHHh
Confidence 478999999964 4799999999999999999999999999999999999999999999999876421 12346
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ 177 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~ 177 (245)
.++|+||++. +++..|+.||+.++.... . . ...++.++++.+++.+. .++++.+|||||||||+|||||+.
T Consensus 73 ~i~~~~q~~~-~~~~~tv~e~l~~~~~~~-~-~-----~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrv~la~al~~ 143 (208)
T cd03268 73 RIGALIEAPG-FYPNLTARENLRLLARLL-G-I-----RKKRIDEVLDVVGLKDS-AKKKVKGFSLGMKQRLGIALALLG 143 (208)
T ss_pred hEEEecCCCc-cCccCcHHHHHHHHHHhc-C-C-----cHHHHHHHHHHcCCHHH-HhhhHhhCCHHHHHHHHHHHHHhc
Confidence 7999999984 666789999998752111 1 0 12356778999999875 689999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEe
Q 035832 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~ 240 (245)
+|++|||||||+|||+.+++.++++|+++++ +.|||++|||++++..+||++++|++|+++..
T Consensus 144 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~tH~~~~~~~~~d~v~~l~~g~i~~~ 207 (208)
T cd03268 144 NPDLLILDEPTNGLDPDGIKELRELILSLRDQGITVLISSHLLSEIQKVADRIGIINKGKLIEE 207 (208)
T ss_pred CCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEECCEEEec
Confidence 9999999999999999999999999999864 68999999999999999999999999998754
|
Bacitracin is a dodecapeptide antibiotic produced by B. licheniformis and B. subtilis. The synthesis of bacitracin is non-ribosomally catalyzed by a multienzyme complex BcrABC. Bacitracin has potent antibiotic activity against gram-positive bacteria. The inhibition of peptidoglycan biosynthesis is the best characterized bacterial effect of bacitracin. The bacitracin resistance of B. licheniformis is mediated by the ABC transporter Bcr which is composed of two identical BcrA ATP-binding subunits and one each of the integral membrane proteins, BcrB and BcrC. B. subtilis cells carrying bcr genes on high-copy number plasmids develop collateral detergent sensitivity, a similar phenomenon in human cells with overexpressed multi-drug resistance P-glycoprotein. |
| >TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-54 Score=388.40 Aligned_cols=209 Identities=29% Similarity=0.399 Sum_probs=178.1
Q ss_pred ECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecC
Q 035832 26 RPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQF 105 (245)
Q Consensus 26 ~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~ 105 (245)
+|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...+.......+++++||+||+
T Consensus 2 ~~~~--~~~l~~vs~~i~~Gei~~l~G~sGsGKSTLLr~L~Gl~~p~~G~I~i~G~~i~~~~~~~~~~~rr~~i~~v~Q~ 79 (363)
T TIGR01186 2 KTGG--KKGVNDADLAIAKGEIFVIMGLSGSGKSTTVRMLNRLIEPTAGQIFIDGENIMKQSPVELREVRRKKIGMVFQQ 79 (363)
T ss_pred ccCC--ceeEEeeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCCCCceEEEECCEECCcCCHHHHHHHHhCcEEEEECC
Confidence 5653 46999999999999999999999999999999999999999999999999886532211111125689999999
Q ss_pred CCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEe
Q 035832 106 PERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILD 185 (245)
Q Consensus 106 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllD 185 (245)
+. +|+.+||.||+.++.... .. ...+..+++.++++.+||+.. .++++.+|||||||||+|||||+.+|++||||
T Consensus 80 ~~-l~~~~TV~eNi~~~~~~~-~~--~~~~~~~~~~~~l~~vgL~~~-~~~~p~~LSGGq~QRV~lARAL~~~p~iLLlD 154 (363)
T TIGR01186 80 FA-LFPHMTILQNTSLGPELL-GW--PEQERKEKALELLKLVGLEEY-EHRYPDELSGGMQQRVGLARALAAEPDILLMD 154 (363)
T ss_pred Cc-CCCCCCHHHHHHHHHHHc-CC--CHHHHHHHHHHHHHhcCCchh-hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEe
Confidence 85 778899999999863211 11 123345578899999999875 79999999999999999999999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 186 EPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 186 EPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|||++||+.+++.+.+.|.++.+ ++|||++|||++++..+||++++|++|+++..+
T Consensus 155 EP~saLD~~~r~~l~~~l~~l~~~~~~Tii~vTHd~~ea~~~~drI~vl~~G~iv~~g 212 (363)
T TIGR01186 155 EAFSALDPLIRDSMQDELKKLQATLQKTIVFITHDLDEAIRIGDRIVIMKAGEIVQVG 212 (363)
T ss_pred CCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEeeC
Confidence 99999999999999999999863 589999999999999999999999999998654
|
This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact |
| >PRK13649 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-54 Score=373.63 Aligned_cols=222 Identities=33% Similarity=0.546 Sum_probs=182.1
Q ss_pred eEEEEeEEEECCCCc---cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQ---VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
.|+++|++++|++.. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..........
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~~~~~ 81 (280)
T PRK13649 2 GINLQNVSYTYQAGTPFEGRALFDVNLTIEDGSYTAFIGHTGSGKSTIMQLLNGLHVPTQGSVRVDDTLITSTSKNKDIK 81 (280)
T ss_pred eEEEEEEEEEcCCCCccccceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccCHH
Confidence 489999999996421 36999999999999999999999999999999999999999999999998875321100111
Q ss_pred CCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
.+++.++|+||++...++..|+.+|+.++.... .. ........+.++++.+++.....++++.+||||||||++|||
T Consensus 82 ~~~~~i~~~~q~~~~~~~~~tv~e~l~~~~~~~-~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~ 158 (280)
T PRK13649 82 QIRKKVGLVFQFPESQLFEETVLKDVAFGPQNF-GV--SQEEAEALAREKLALVGISESLFEKNPFELSGGQMRRVAIAG 158 (280)
T ss_pred HHHhheEEEeeChhhhhccccHHHHHHHHHHHc-CC--CHHHHHHHHHHHHHHcCCChhhhhCCcccCCHHHHHHHHHHH
Confidence 234679999999732334579999998752111 11 112233456788999999742368999999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||+.+|++|||||||++||+.+++.+.+.|+++++ +.|||++|||++++..+||++++|++|+++..+
T Consensus 159 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 227 (280)
T PRK13649 159 ILAMEPKILVLDEPTAGLDPKGRKELMTLFKKLHQSGMTIVLVTHLMDDVANYADFVYVLEKGKLVLSG 227 (280)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999864 689999999999999999999999999998653
|
|
| >PRK11248 tauB taurine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-53 Score=367.21 Aligned_cols=209 Identities=30% Similarity=0.431 Sum_probs=180.2
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
||+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++... .
T Consensus 1 ml~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~---------~ 69 (255)
T PRK11248 1 MLQISHLYADYGG--KPALEDINLTLESGELLVVLGPSGCGKTTLLNLIAGFVPYQHGSITLDGKPVEGP---------G 69 (255)
T ss_pred CEEEEEEEEEeCC--eeeEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCC---------C
Confidence 5899999999964 4699999999999999999999999999999999999999999999999876421 2
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
..++|+||++. +++..|+.+|+.++.... .. .......++.++++.+++.+. .++++.+||||||||++|||||+
T Consensus 70 ~~~~~v~q~~~-~~~~~tv~e~l~~~~~~~-~~--~~~~~~~~~~~~l~~~gl~~~-~~~~~~~LSgGq~qrl~laral~ 144 (255)
T PRK11248 70 AERGVVFQNEG-LLPWRNVQDNVAFGLQLA-GV--EKMQRLEIAHQMLKKVGLEGA-EKRYIWQLSGGQRQRVGIARALA 144 (255)
T ss_pred CcEEEEeCCCc-cCCCCcHHHHHHhHHHHc-CC--CHHHHHHHHHHHHHHcCChhH-hhCChhhCCHHHHHHHHHHHHHh
Confidence 35899999984 566789999998752111 11 112233467889999999875 68999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-c-CceEEEEecChhHHHhhccEEEEEe--CCeEEEec
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLK-K-ELTILVVSHDLKEMAALVDHSWRMD--MGGFLVEQ 241 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~-~~tiii~tHd~~~~~~~~d~v~~l~--~G~i~~~~ 241 (245)
.+|++|||||||+|||+.+++.++++|+++. + +.|||++|||++++..+||++++|+ +|+++.+.
T Consensus 145 ~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~~~G~i~~~~ 213 (255)
T PRK11248 145 ANPQLLLLDEPFGALDAFTREQMQTLLLKLWQETGKQVLLITHDIEEAVFMATELVLLSPGPGRVVERL 213 (255)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCcEEEEEe
Confidence 9999999999999999999999999999984 3 6899999999999999999999998 59987754
|
|
| >COG0444 DppD ABC-type dipeptide/oligopeptide/nickel transport system, ATPase component [Amino acid transport and metabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-54 Score=374.26 Aligned_cols=225 Identities=29% Similarity=0.422 Sum_probs=188.6
Q ss_pred eEEEEeEEEECCCC--ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-C----CcceEEEcCccCCCCCCC
Q 035832 17 CLEVRDVSYRPPGT--QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK-P----TSGSINIRGYNNDGEPNN 89 (245)
Q Consensus 17 ~l~~~~l~~~y~~~--~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-p----~~G~i~~~g~~~~~~~~~ 89 (245)
.|+++||+.+|... ...+++||||++++||++||+|+|||||||+.++|+|+++ | .+|+|.|+|+++...+..
T Consensus 1 lL~v~nL~v~f~~~~g~v~av~~vs~~i~~GE~lgiVGESGsGKS~~~~aim~llp~~~~~i~~G~i~f~g~~l~~l~~~ 80 (316)
T COG0444 1 LLEVKNLSVSFPTDAGVVKAVDGVSFELKKGEILGIVGESGSGKSVLAKAIMGLLPKPNARIVGGEILFDGKDLLSLSEK 80 (316)
T ss_pred CceEeeeEEEEecCCccEEEEeceeEEEcCCcEEEEEcCCCCCHHHHHHHHHhccCCCCCeEeeeEEEECCcccccCCHH
Confidence 37899999998542 3569999999999999999999999999999999999998 4 579999999998766543
Q ss_pred CCCCCCCCcEEEEecCCCCCCC-cccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCc--cCCCCCCCCChHHH
Q 035832 90 SPEPLPPEKVGIVFQFPERYFV-ADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGT--SLDKDPHSLSGGYK 166 (245)
Q Consensus 90 ~~~~~~~~~i~~v~Q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~~LSgGqk 166 (245)
...+.+.++|+||||+|...++ -+++.+.+.-..... .....+++..+++.++|+.+|+.+. .++.||++||||||
T Consensus 81 ~~~~iRG~~I~mIfQ~p~~sLnPv~~Ig~Qi~E~l~~h-~~~~~~~ea~~~a~~~L~~Vgi~~~~~~~~~YPhelSGGMr 159 (316)
T COG0444 81 ELRKIRGKEIAMIFQDPMTSLNPVMTIGDQIAEVLRLH-GKGLSKKEAKERAIELLELVGIPDPERRLKSYPHELSGGMR 159 (316)
T ss_pred HHHhhcCceEEEEEcCchhhcCChhhHHHHHHHHHHHh-hcchhhHHHHHHHHHHHHHcCCCCHHHHHhhCCcccCCcHH
Confidence 2234567889999999976554 457776665432111 1100234456678999999999863 46999999999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 167 RRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 167 qrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
|||+||.||+.+|+|||+||||++||...+.+++++|+++++ +.++|+||||+..++++||||+||..|+++..+.
T Consensus 160 QRV~IAmala~~P~LlIADEPTTALDvt~QaqIl~Ll~~l~~e~~~aiilITHDl~vva~~aDri~VMYaG~iVE~g~ 237 (316)
T COG0444 160 QRVMIAMALALNPKLLIADEPTTALDVTVQAQILDLLKELQREKGTALILITHDLGVVAEIADRVAVMYAGRIVEEGP 237 (316)
T ss_pred HHHHHHHHHhCCCCEEEeCCCcchhhHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceEEEEECcEEEEeCC
Confidence 999999999999999999999999999999999999999975 5899999999999999999999999999998765
|
|
| >PRK11264 putative amino-acid ABC transporter ATP-binding protein YecC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.3e-54 Score=367.47 Aligned_cols=219 Identities=29% Similarity=0.437 Sum_probs=183.7
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCC----CC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNS----PE 92 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~----~~ 92 (245)
||+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++....... ..
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 80 (250)
T PRK11264 3 AIEVKNLVKKFHG--QTVLHGIDLEVKPGEVVAIIGPSGSGKTTLLRCINLLEQPEAGTIRVGDITIDTARSLSQQKGLI 80 (250)
T ss_pred cEEEeceEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccccccchhhHH
Confidence 7999999999964 46999999999999999999999999999999999999999999999998874321000 00
Q ss_pred CCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHH
Q 035832 93 PLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALA 172 (245)
Q Consensus 93 ~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iA 172 (245)
...++.++|+||++. +++..|+.||+.++....... ........+.++++.+|+... .++++.+|||||||||+||
T Consensus 81 ~~~~~~i~~v~q~~~-~~~~~tv~e~l~~~~~~~~~~--~~~~~~~~~~~~l~~~gl~~~-~~~~~~~LS~Gq~qrv~la 156 (250)
T PRK11264 81 RQLRQHVGFVFQNFN-LFPHRTVLENIIEGPVIVKGE--PKEEATARARELLAKVGLAGK-ETSYPRRLSGGQQQRVAIA 156 (250)
T ss_pred HHhhhhEEEEecCcc-cCCCCCHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHcCCcch-hhCChhhCChHHHHHHHHH
Confidence 123467999999984 566789999998742100011 112234457788999999865 6899999999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 173 IQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 173 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|||+.+|++|||||||+|||+.+++.++++|+++.+ +.|||++|||++++..+||++++|++|+++..+
T Consensus 157 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~tH~~~~~~~~~d~i~~l~~G~i~~~~ 226 (250)
T PRK11264 157 RALAMRPEVILFDEPTSALDPELVGEVLNTIRQLAQEKRTMVIVTHEMSFARDVADRAIFMDQGRIVEQG 226 (250)
T ss_pred HHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999865 689999999999999999999999999998653
|
|
| >cd03292 ABC_FtsE_transporter FtsE is a hydrophilic nucleotide-binding protein that binds FtsX to form a heterodimeric ATP-binding cassette (ABC)-type transporter that associates with the bacterial inner membrane | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-54 Score=362.21 Aligned_cols=213 Identities=29% Similarity=0.450 Sum_probs=179.2
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|++++|+++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....... ....++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~~sl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~-~~~~~~ 78 (214)
T cd03292 1 IEFINVTKTYPNG-TAALDGINISISAGEFVFLVGPSGAGKSTLLKLIYKEELPTSGTIRVNGQDVSDLRGRA-IPYLRR 78 (214)
T ss_pred CEEEEEEEEeCCC-ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcccCCHHH-HHHHHH
Confidence 4789999999643 46999999999999999999999999999999999999999999999998874321100 011246
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ 177 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~ 177 (245)
.++|+||++. +++..|+.||+.++.... .. ......+++.++++.+++++. .++++.+||||||||++|||||+.
T Consensus 79 ~i~~v~q~~~-~~~~~t~~~~l~~~~~~~-~~--~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrv~laral~~ 153 (214)
T cd03292 79 KIGVVFQDFR-LLPDRNVYENVAFALEVT-GV--PPREIRKRVPAALELVGLSHK-HRALPAELSGGEQQRVAIARAIVN 153 (214)
T ss_pred heEEEecCch-hccCCcHHHHHHHHHHHc-CC--CHHHHHHHHHHHHHHcCCHHH-hhCChhhcCHHHHHHHHHHHHHHc
Confidence 7999999984 666789999998752111 11 112234467889999999875 689999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-cCceEEEEecChhHHHhhccEEEEEeCCeE
Q 035832 178 VPDLLILDEPLAGLDWKARADVVKLLKHLK-KELTILVVSHDLKEMAALVDHSWRMDMGGF 237 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~~~~i~~~l~~l~-~~~tiii~tHd~~~~~~~~d~v~~l~~G~i 237 (245)
+|+++||||||++||+.+++.+.+.|+++. ++.|||++||+++++..+||++++|++|++
T Consensus 154 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~~ 214 (214)
T cd03292 154 SPTILIADEPTGNLDPDTTWEIMNLLKKINKAGTTVVVATHAKELVDTTRHRVIALERGKL 214 (214)
T ss_pred CCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 999999999999999999999999999985 468999999999999999999999999874
|
The FtsE/X transporter is thought to be involved in cell division and is important for assembly or stability of the septal ring. |
| >PRK10070 glycine betaine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-54 Score=389.19 Aligned_cols=221 Identities=29% Similarity=0.371 Sum_probs=184.9
Q ss_pred ceEEEEeEEEECCCCc----------------------cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCc
Q 035832 16 SCLEVRDVSYRPPGTQ----------------------VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTS 73 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~----------------------~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~ 73 (245)
.+|+++||++.|+... ..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++
T Consensus 3 ~~i~~~~~~k~fg~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~isl~i~~Gei~~LvG~NGsGKSTLLr~I~Gl~~p~s 82 (400)
T PRK10070 3 IKLEIKNLYKIFGEHPQRAFKYIEQGLSKEQILEKTGLSLGVKDASLAIEEGEIFVIMGLSGSGKSTMVRLLNRLIEPTR 82 (400)
T ss_pred cEEEEeeeEEecCCChHHHHHHHhccccHHHHHhhcCCeEEEEeEEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCC
Confidence 4689999999886531 127999999999999999999999999999999999999999
Q ss_pred ceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCcc
Q 035832 74 GSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTS 153 (245)
Q Consensus 74 G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 153 (245)
|+|+++|+++...+.......+++++||+||++. +|+.+|+.||+.++.... .. ......+++.++++.+||.+.
T Consensus 83 G~I~i~G~~i~~~~~~~l~~~~~~~igyv~Q~~~-l~~~~Tv~enl~~~~~~~-~~--~~~~~~~~~~e~L~~~gL~~~- 157 (400)
T PRK10070 83 GQVLIDGVDIAKISDAELREVRRKKIAMVFQSFA-LMPHMTVLDNTAFGMELA-GI--NAEERREKALDALRQVGLENY- 157 (400)
T ss_pred CEEEECCEECCcCCHHHHHHHHhCCEEEEECCCc-CCCCCCHHHHHHHHHHhc-CC--CHHHHHHHHHHHHHHcCCChh-
Confidence 9999999987543211101112457999999985 677889999999863211 11 122334567889999999875
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEE
Q 035832 154 LDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWR 231 (245)
Q Consensus 154 ~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~ 231 (245)
.++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+++.|.++.+ ++|||++|||++++..+||++++
T Consensus 158 ~~~~~~~LSgGq~QRv~LArAL~~~P~iLLLDEPts~LD~~~r~~l~~~L~~l~~~~g~TIIivTHd~~~~~~~~Dri~v 237 (400)
T PRK10070 158 AHSYPDELSGGMRQRVGLARALAINPDILLMDEAFSALDPLIRTEMQDELVKLQAKHQRTIVFISHDLDEAMRIGDRIAI 237 (400)
T ss_pred hhcCcccCCHHHHHHHHHHHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHHCCCeEEEEECCHHHHHHhCCEEEE
Confidence 7999999999999999999999999999999999999999999999999999853 58999999999999999999999
Q ss_pred EeCCeEEEec
Q 035832 232 MDMGGFLVEQ 241 (245)
Q Consensus 232 l~~G~i~~~~ 241 (245)
|++|+++..+
T Consensus 238 L~~G~i~~~g 247 (400)
T PRK10070 238 MQNGEVVQVG 247 (400)
T ss_pred EECCEEEecC
Confidence 9999998643
|
|
| >cd03269 ABC_putative_ATPase This subfamily is involved in drug resistance, nodulation, lipid transport, and bacteriocin and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-54 Score=359.15 Aligned_cols=208 Identities=24% Similarity=0.386 Sum_probs=179.5
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|+++.|++ +++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. ..++
T Consensus 1 l~~~~l~~~~~~--~~~l~~v~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~--------~~~~ 70 (210)
T cd03269 1 LEVENVTKRFGR--VTALDDISFSVEKGEIFGLLGPNGAGKTTTIRMILGIILPDSGEVLFDGKPLDI--------AARN 70 (210)
T ss_pred CEEEEEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCCchhH--------HHHc
Confidence 478999999964 469999999999999999999999999999999999999999999999987632 1245
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ 177 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~ 177 (245)
.++|+||++. +++..|+.||+.+..... .. ......+.+.++++.+++++. .++++.+||||||||++|||||+.
T Consensus 71 ~i~~~~q~~~-~~~~~tv~e~l~~~~~~~-~~--~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrl~la~al~~ 145 (210)
T cd03269 71 RIGYLPEERG-LYPKMKVIDQLVYLAQLK-GL--KKEEARRRIDEWLERLELSEY-ANKRVEELSKGNQQKVQFIAAVIH 145 (210)
T ss_pred cEEEeccCCc-CCcCCcHHHHHHHHHHHc-CC--ChHHHHHHHHHHHHHcCChHH-HhCcHhhCCHHHHHHHHHHHHHhc
Confidence 7999999984 666789999998742111 11 112234567889999999875 689999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEe
Q 035832 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~ 240 (245)
+|+++||||||+|||+.+++.+.+.|+++.+ +.|||++||+++++..+||++++|++|+++..
T Consensus 146 ~p~~lllDEP~~~LD~~~~~~~~~~l~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~ 209 (210)
T cd03269 146 DPELLILDEPFSGLDPVNVELLKDVIRELARAGKTVILSTHQMELVEELCDRVLLLNKGRAVLY 209 (210)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhhhEEEEEeCCEEEec
Confidence 9999999999999999999999999999864 58999999999999999999999999998753
|
In eubacteria and archaea, the typical organization consists of one ABC and one or two IMs. Eukaryote systems of the ABCA subfamily display ABC domains strongly similar to this family. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK15093 antimicrobial peptide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-54 Score=382.31 Aligned_cols=226 Identities=23% Similarity=0.348 Sum_probs=183.7
Q ss_pred ceEEEEeEEEECCC--CccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC----CCcceEEEcCccCCCCCCC
Q 035832 16 SCLEVRDVSYRPPG--TQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK----PTSGSINIRGYNNDGEPNN 89 (245)
Q Consensus 16 ~~l~~~~l~~~y~~--~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~----p~~G~i~~~g~~~~~~~~~ 89 (245)
++|+++||+++|+. +...+|+||||+|++||+++|+|+||||||||+++|+|+++ |++|+|+++|+++......
T Consensus 2 ~~L~v~~l~~~y~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTLl~~i~Gl~~~~~~~~~G~i~~~g~~i~~~~~~ 81 (330)
T PRK15093 2 PLLDIRNLTIEFKTSDGWVKAVDRVSMTLTEGEIRGLVGESGSGKSLIAKAICGVTKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred CeEEEeeeEEEEeCCCCCEEEEeeeEEEECCCCEEEEECCCCCCHHHHHHHHHccCCCCCCCcceEEEECCEECCcCCHH
Confidence 47999999999952 23469999999999999999999999999999999999997 5899999999987543221
Q ss_pred CCCCCCCCcEEEEecCCCC-CCCcccHHHHHHhcCCC--CCCc-hhHHHHHHHHHHHHHHHcCCCCc--cCCCCCCCCCh
Q 035832 90 SPEPLPPEKVGIVFQFPER-YFVADNVLDEVIFGWPR--QSGS-IQLKEYLALNLQRAINWVGLDGT--SLDKDPHSLSG 163 (245)
Q Consensus 90 ~~~~~~~~~i~~v~Q~~~~-~~~~~tv~e~l~~~~~~--~~~~-~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~~LSg 163 (245)
.....+++.|+||||++.. +.+.+|+.+++.+.... .... .....+...++.++++.+||.+. .+++++++|||
T Consensus 82 ~~~~~~~~~i~~v~Q~~~~~l~p~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~gL~~~~~~~~~~p~~LSg 161 (330)
T PRK15093 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLMQNIPGWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDAMRSFPYELTE 161 (330)
T ss_pred HHHHHhCCCEEEEecCcchhcCccccHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHCCCCChHHHHhCCchhCCH
Confidence 1111234579999999853 34567999998753110 0000 00012234567889999999742 25889999999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 164 GYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 164 Gqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||||||+|||||+.+|++|||||||++||+.++.+++++|+++.+ +.|||+||||++++..+||++++|++|+++..+
T Consensus 162 G~~QRv~iArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~tii~itHdl~~v~~~~dri~vm~~G~ive~g 241 (330)
T PRK15093 162 GECQKVMIAIALANQPRLLIADEPTNAMEPTTQAQIFRLLTRLNQNNNTTILLISHDLQMLSQWADKINVLYCGQTVETA 241 (330)
T ss_pred HHHHHHHHHHHHHCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999999999864 589999999999999999999999999998764
|
|
| >PRK09493 glnQ glutamine ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-54 Score=365.21 Aligned_cols=217 Identities=29% Similarity=0.436 Sum_probs=183.8
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
||+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|.++..... ....++
T Consensus 1 ~l~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~--~~~~~~ 76 (240)
T PRK09493 1 MIEFKNVSKHFGP--TQVLHNIDLNIDQGEVVVIIGPSGSGKSTLLRCINKLEEITSGDLIVDGLKVNDPKV--DERLIR 76 (240)
T ss_pred CEEEEeEEEEECC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCCh--hHHHHh
Confidence 5899999999964 469999999999999999999999999999999999999999999999988753211 111234
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
++++|+||++. +++..|+.+|+.++...... . ........+.++++.+|+++. +++++.+||||||||++|||||+
T Consensus 77 ~~i~~~~q~~~-~~~~~tv~~~l~~~~~~~~~-~-~~~~~~~~~~~~l~~~gl~~~-~~~~~~~LS~G~~qrv~la~al~ 152 (240)
T PRK09493 77 QEAGMVFQQFY-LFPHLTALENVMFGPLRVRG-A-SKEEAEKQARELLAKVGLAER-AHHYPSELSGGQQQRVAIARALA 152 (240)
T ss_pred hceEEEecccc-cCCCCcHHHHHHhHHHHhcC-C-CHHHHHHHHHHHHHHcCChHH-HhcChhhcCHHHHHHHHHHHHHh
Confidence 67999999984 56678999999875211111 1 112234467889999999865 69999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
.+|+++||||||+|||+.+++.++++|+++++ +.|||++||+++++..+||++++|++|+++..+
T Consensus 153 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 218 (240)
T PRK09493 153 VKPKLMLFDEPTSALDPELRHEVLKVMQDLAEEGMTMVIVTHEIGFAEKVASRLIFIDKGRIAEDG 218 (240)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEeeC
Confidence 99999999999999999999999999999864 689999999999999999999999999998654
|
|
| >PRK13652 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-53 Score=371.37 Aligned_cols=217 Identities=33% Similarity=0.535 Sum_probs=184.3
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
++|+++|++++|+++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...+. ..+
T Consensus 2 ~~l~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~----~~~ 76 (277)
T PRK13652 2 HLIETRDLCYSYSGS-KEALNNINFIAPRNSRIAVIGPNGAGKSTLFRHFNGILKPTSGSVLIRGEPITKENI----REV 76 (277)
T ss_pred ceEEEEEEEEEeCCC-CceeeEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCCH----HHH
Confidence 579999999999642 359999999999999999999999999999999999999999999999988743211 123
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
+++++|+||++...++..|+.+|+.++.... . . ........+.++++.+++.+. .++.+.+||||||||++|||||
T Consensus 77 ~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~-~-~-~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~Gq~qrl~laraL 152 (277)
T PRK13652 77 RKFVGLVFQNPDDQIFSPTVEQDIAFGPINL-G-L-DEETVAHRVSSALHMLGLEEL-RDRVPHHLSGGEKKRVAIAGVI 152 (277)
T ss_pred HhheEEEecCcccccccccHHHHHHhHHHHc-C-C-CHHHHHHHHHHHHHHCCChhH-hcCCcccCCHHHHHHHHHHHHH
Confidence 4679999999743345689999998752111 1 1 122234467889999999875 7999999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+.+|++|||||||+|||+.+++.++++|+++.+ +.|||++||+++++..+|||+++|++|+++..+
T Consensus 153 ~~~p~llilDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~~~~drv~~l~~G~i~~~g 220 (277)
T PRK13652 153 AMEPQVLVLDEPTAGLDPQGVKELIDFLNDLPETYGMTVIFSTHQLDLVPEMADYIYVMDKGRIVAYG 220 (277)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCeEEEEC
Confidence 999999999999999999999999999999864 689999999999999999999999999998764
|
|
| >TIGR00972 3a0107s01c2 phosphate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-53 Score=364.99 Aligned_cols=216 Identities=26% Similarity=0.402 Sum_probs=182.5
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-----cceEEEcCccCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPT-----SGSINIRGYNNDGEPNNSP 91 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~g~~~~~~~~~~~ 91 (245)
+|+++|++++|++ ..+++|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++...+. .
T Consensus 1 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~~~~~~G~i~~~g~~~~~~~~--~ 76 (247)
T TIGR00972 1 AIEIENLNLFYGE--KEALKNINLDIPKNQVTALIGPSGCGKSTLLRSLNRMNDLVPGVRIEGKVLFDGQDIYDKKI--D 76 (247)
T ss_pred CEEEEEEEEEECC--eeeecceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceEEEECCEEcccccc--c
Confidence 5899999999974 46999999999999999999999999999999999999998 9999999998753211 0
Q ss_pred CCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCC----CccCCCCCCCCChHHHH
Q 035832 92 EPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLD----GTSLDKDPHSLSGGYKR 167 (245)
Q Consensus 92 ~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~~LSgGqkq 167 (245)
....++.++|+||++. +++ .|+.||+.++.... ... ........+.++++.+|+. +. +++++.+|||||||
T Consensus 77 ~~~~~~~i~~v~q~~~-~~~-~tv~e~l~~~~~~~-~~~-~~~~~~~~~~~~l~~~~l~~~~~~~-~~~~~~~LSgG~~q 151 (247)
T TIGR00972 77 VVELRRRVGMVFQKPN-PFP-MSIYDNIAYGPRLH-GIK-DKKELDEIVEESLKKAALWDEVKDR-LHDSALGLSGGQQQ 151 (247)
T ss_pred hHHHHhheEEEecCcc-cCC-CCHHHHHHhHHHhc-CCC-CHHHHHHHHHHHHHHcCCCcchhhH-hhCCcccCCHHHHH
Confidence 1123567999999984 555 99999998752111 100 1123344678889999997 54 68899999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 168 RLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 168 rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|++|||||+.+|+++||||||+|||+.++..++++|++++++.|||++|||++++..+||++++|++|+++..+
T Consensus 152 rv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~ 225 (247)
T TIGR00972 152 RLCIARALAVEPEVLLLDEPTSALDPIATGKIEELIQELKKKYTIVIVTHNMQQAARISDRTAFFYDGELVEYG 225 (247)
T ss_pred HHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCeEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999876689999999999999999999999999998654
|
This model represents the ATP-binding protein of a family of ABC transporters for inorganic phosphate. In the model species Escherichia coli, a constitutive transporter for inorganic phosphate, with low affinity, is also present. The high affinity transporter that includes this polypeptide is induced when extracellular phosphate concentrations are low. The proteins most similar to the members of this family but not included appear to be amino acid transporters. |
| >PRK11300 livG leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-53 Score=366.93 Aligned_cols=220 Identities=28% Similarity=0.438 Sum_probs=184.2
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
+++|+++|++++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ...
T Consensus 3 ~~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~---~~~ 77 (255)
T PRK11300 3 QPLLSVSGLMMRFGG--LLAVNNVNLEVREQEIVSLIGPNGAGKTTVFNCLTGFYKPTGGTILLRGQHIEGLPG---HQI 77 (255)
T ss_pred CceEEEeeEEEEECC--EEEEEeeeeEEcCCeEEEEECCCCCCHHHHHHHHhCCcCCCcceEEECCEECCCCCH---HHH
Confidence 458999999999964 479999999999999999999999999999999999999999999999988753221 111
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCC------C--c----hhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCC
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQS------G--S----IQLKEYLALNLQRAINWVGLDGTSLDKDPHSLS 162 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~------~--~----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS 162 (245)
.+..++|+||++. +++.+|+.+|+.++..... . . ..........+.++++.+|+.+. .++++.+||
T Consensus 78 ~~~~i~~~~q~~~-~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~~LS 155 (255)
T PRK11300 78 ARMGVVRTFQHVR-LFREMTVIENLLVAQHQQLKTGLFSGLLKTPAFRRAESEALDRAATWLERVGLLEH-ANRQAGNLA 155 (255)
T ss_pred HhcCeEEeccCcc-cCCCCcHHHHHHHhhhccccchhhhhhccccccccchhHHHHHHHHHHHhCChhhh-hhCChhhCC
Confidence 2346999999985 6677899999987521100 0 0 00111223457788999999875 799999999
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEe
Q 035832 163 GGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240 (245)
Q Consensus 163 gGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~ 240 (245)
||||||++|||||+.+|++|||||||+|||+.+++.++++|.++++ +.|||++||+++++..+||++++|++|+++..
T Consensus 156 ~G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~g~i~~~ 235 (255)
T PRK11300 156 YGQQRRLEIARCMVTQPEILMLDEPAAGLNPKETKELDELIAELRNEHNVTVLLIEHDMKLVMGISDRIYVVNQGTPLAN 235 (255)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEcCCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEec
Confidence 9999999999999999999999999999999999999999999864 58999999999999999999999999999865
Q ss_pred c
Q 035832 241 Q 241 (245)
Q Consensus 241 ~ 241 (245)
+
T Consensus 236 ~ 236 (255)
T PRK11300 236 G 236 (255)
T ss_pred C
Confidence 4
|
|
| >PRK09473 oppD oligopeptide transporter ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-53 Score=380.52 Aligned_cols=227 Identities=27% Similarity=0.361 Sum_probs=185.8
Q ss_pred CCcceEEEEeEEEECCC--CccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---cceEEEcCccCCCCC
Q 035832 13 CDYSCLEVRDVSYRPPG--TQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPT---SGSINIRGYNNDGEP 87 (245)
Q Consensus 13 ~~~~~l~~~~l~~~y~~--~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~ 87 (245)
..+++|+++||++.|+. +...+++||||+|++||+++|+|+||||||||+++|+|+++|+ +|+|.++|+++...+
T Consensus 8 ~~~~~L~i~~l~~~~~~~~~~~~~l~~vsl~i~~Ge~~~ivG~sGsGKSTL~~~l~Gl~~p~~~~sG~I~~~G~~i~~~~ 87 (330)
T PRK09473 8 QADALLDVKDLRVTFSTPDGDVTAVNDLNFSLRAGETLGIVGESGSGKSQTAFALMGLLAANGRIGGSATFNGREILNLP 87 (330)
T ss_pred CCCceEEEeCeEEEEecCCCCEEEEeeeEEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCCCCeEEEECCEECCcCC
Confidence 34568999999999952 2346999999999999999999999999999999999999996 999999999886533
Q ss_pred CCCCCCCCCCcEEEEecCCC-CCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCc--cCCCCCCCCChH
Q 035832 88 NNSPEPLPPEKVGIVFQFPE-RYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGT--SLDKDPHSLSGG 164 (245)
Q Consensus 88 ~~~~~~~~~~~i~~v~Q~~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~~LSgG 164 (245)
.......++++|+||||++. .+.+.+|+.+++.......... ...+...++.++++.++|.+. .+++++++||||
T Consensus 88 ~~~~~~~r~~~i~~v~Q~~~~~l~p~~~v~~~i~~~~~~~~~~--~~~~~~~~~~~~L~~vgL~~~~~~~~~~p~~LSgG 165 (330)
T PRK09473 88 EKELNKLRAEQISMIFQDPMTSLNPYMRVGEQLMEVLMLHKGM--SKAEAFEESVRMLDAVKMPEARKRMKMYPHEFSGG 165 (330)
T ss_pred HHHHHHHhcCCEEEEEcCchhhcCCCCCHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHcCCCChHHHhcCCcccCCHH
Confidence 21111122357999999984 2455689988886542111111 122334567888999999742 247899999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 165 YKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 165 qkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|+|||+|||||+.+|++||+||||++||+.++..++++|+++++ +.|+|+||||++.+..+||++++|++|+++..+
T Consensus 166 ~~QRv~IArAL~~~P~llilDEPts~LD~~~~~~i~~lL~~l~~~~g~til~iTHdl~~~~~~~Dri~vm~~G~ive~g 244 (330)
T PRK09473 166 MRQRVMIAMALLCRPKLLIADEPTTALDVTVQAQIMTLLNELKREFNTAIIMITHDLGVVAGICDKVLVMYAGRTMEYG 244 (330)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999964 689999999999999999999999999998764
|
|
| >cd03224 ABC_TM1139_LivF_branched LivF (TM1139) is part of the LIV-I bacterial ABC-type two-component transport system that imports neutral, branched-chain amino acids | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-54 Score=360.97 Aligned_cols=212 Identities=30% Similarity=0.453 Sum_probs=178.9
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|++++|++ +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...... ...++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~~---~~~~~ 75 (222)
T cd03224 1 LEVENLNAGYGK--SQILFGVSLTVPEGEIVALLGRNGAGKTTLLKTIMGLLPPRSGSIRFDGRDITGLPPH---ERARA 75 (222)
T ss_pred CEEeeEEeecCC--eeEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCCCCHH---HHHhc
Confidence 578999999964 4699999999999999999999999999999999999999999999999876432211 11245
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHc-CCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWV-GLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
.++|+||++. +++.+|+.+|+.++..... .......+.++++.+ ++.+. .++++.+||||||||++|||||+
T Consensus 76 ~i~~~~q~~~-~~~~~t~~~~l~~~~~~~~-----~~~~~~~~~~~l~~~~~l~~~-~~~~~~~LS~G~~qrv~laral~ 148 (222)
T cd03224 76 GIGYVPEGRR-IFPELTVEENLLLGAYARR-----RAKRKARLERVYELFPRLKER-RKQLAGTLSGGEQQMLAIARALM 148 (222)
T ss_pred CeEEeccccc-cCCCCcHHHHHHHHhhhcC-----chhHHHHHHHHHHHHHhhhhh-hhCchhhCCHHHHHHHHHHHHHh
Confidence 6999999984 6677899999987532111 111233456677777 57654 68999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
.+|++|||||||+|||+.+++.++++|+++.+ +.|||++|||++++..+||++++|++|+++..+
T Consensus 149 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~ 214 (222)
T cd03224 149 SRPKLLLLDEPSEGLAPKIVEEIFEAIRELRDEGVTILLVEQNARFALEIADRAYVLERGRVVLEG 214 (222)
T ss_pred cCCCEEEECCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhccEEEEeeCCeEEEeC
Confidence 99999999999999999999999999999864 689999999999999999999999999998654
|
The E. coli branched-chain amino acid transporter comprises a heterodimer of ABC transporters (LivF and LivG), a heterodimer of six-helix TM domains (LivM and LivH), and one of two alternative soluble periplasmic substrate binding proteins (LivK or LivJ). ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. |
| >PRK13638 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-53 Score=370.76 Aligned_cols=217 Identities=24% Similarity=0.380 Sum_probs=181.9
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
||+++|++++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..... ....++
T Consensus 1 ml~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~--~~~~~~ 76 (271)
T PRK13638 1 MLATSDLWFRYQD--EPVLKGLNLDFSLSPVTGLVGANGCGKSTLFMNLSGLLRPQKGAVLWQGKPLDYSKR--GLLALR 76 (271)
T ss_pred CeEEEEEEEEcCC--cccccceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCccEEEECCEEcccccC--CHHHHH
Confidence 5899999999964 469999999999999999999999999999999999999999999999998732111 011224
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
+.++|+||++...++..++.+|+.++.... .. ........+.++++.+++.+. .++++.+||||||||++|||||+
T Consensus 77 ~~i~~v~q~~~~~~~~~~~~~~l~~~~~~~-~~--~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgG~~qrl~laraL~ 152 (271)
T PRK13638 77 QQVATVFQDPEQQIFYTDIDSDIAFSLRNL-GV--PEAEITRRVDEALTLVDAQHF-RHQPIQCLSHGQKKRVAIAGALV 152 (271)
T ss_pred hheEEEeeChhhccccccHHHHHHHHHHHc-CC--CHHHHHHHHHHHHHHcCCHhH-hcCCchhCCHHHHHHHHHHHHHH
Confidence 679999999753344568999987742111 11 112233457788999999875 68999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
.+|++|||||||+|||+.++..+.++|+++.+ +.|||++|||++++..+||++++|++|+++..+
T Consensus 153 ~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vtH~~~~~~~~~d~i~~l~~G~i~~~g 218 (271)
T PRK13638 153 LQARYLLLDEPTAGLDPAGRTQMIAIIRRIVAQGNHVIISSHDIDLIYEISDAVYVLRQGQILTHG 218 (271)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999864 689999999999999999999999999998754
|
|
| >cd03294 ABC_Pro_Gly_Bertaine This family comprises the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-53 Score=371.18 Aligned_cols=216 Identities=31% Similarity=0.423 Sum_probs=180.9
Q ss_pred EEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCc
Q 035832 19 EVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEK 98 (245)
Q Consensus 19 ~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ 98 (245)
.++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+.......++++
T Consensus 26 ~~~~~~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~p~~G~i~i~g~~~~~~~~~~~~~~~~~~ 103 (269)
T cd03294 26 SKEEILKKTGQ--TVGVNDVSLDVREGEIFVIMGLSGSGKSTLLRCINRLIEPTSGKVLIDGQDIAAMSRKELRELRRKK 103 (269)
T ss_pred hhhhhhhhcCC--ceEeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccChhhhhhhhcCc
Confidence 57788888864 4689999999999999999999999999999999999999999999999887532211111112357
Q ss_pred EEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhC
Q 035832 99 VGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQV 178 (245)
Q Consensus 99 i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~ 178 (245)
++|+||++. +++..|+.||+.++.... .. ......+++.++++.+++.+. .++++.+||||||||++|||||+.+
T Consensus 104 i~~v~q~~~-~~~~~tv~e~l~~~~~~~-~~--~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~Gq~qrv~lAral~~~ 178 (269)
T cd03294 104 ISMVFQSFA-LLPHRTVLENVAFGLEVQ-GV--PRAEREERAAEALELVGLEGW-EHKYPDELSGGMQQRVGLARALAVD 178 (269)
T ss_pred EEEEecCcc-cCCCCcHHHHHHHHHHhc-CC--CHHHHHHHHHHHHHHcCCHhH-hhCCcccCCHHHHHHHHHHHHHhcC
Confidence 999999984 666789999998752111 11 112233457789999999875 6999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhh-c-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 179 PDLLILDEPLAGLDWKARADVVKLLKHLK-K-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 179 p~llllDEPts~LD~~~~~~i~~~l~~l~-~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|++|||||||+|||+.+++.++++|.++. + +.|||++|||++++..+||++++|++|+++..+
T Consensus 179 p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~g 243 (269)
T cd03294 179 PDILLMDEAFSALDPLIRREMQDELLRLQAELQKTIVFITHDLDEALRLGDRIAIMKDGRLVQVG 243 (269)
T ss_pred CCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeC
Confidence 99999999999999999999999999985 3 589999999999999999999999999998653
|
This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporters is the obligatory coupling of ATP hydrolysis to substrate translocation. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14247 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-53 Score=364.27 Aligned_cols=218 Identities=28% Similarity=0.404 Sum_probs=183.3
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CcceEEEcCccCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP-----TSGSINIRGYNNDGEPNNS 90 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~~~~~~~~ 90 (245)
++|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+.
T Consensus 2 ~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~-- 77 (250)
T PRK14247 2 NKIEIRDLKVSFGQ--VEVLDGVNLEIPDNTITALMGPSGSGKSTLLRVFNRLIELYPEARVSGEVYLDGQDIFKMDV-- 77 (250)
T ss_pred ceEEEEeeEEEECC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCCCCceEEEECCEECCcCCH--
Confidence 46999999999964 4699999999999999999999999999999999999974 79999999998753221
Q ss_pred CCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC---ccCCCCCCCCChHHHH
Q 035832 91 PEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG---TSLDKDPHSLSGGYKR 167 (245)
Q Consensus 91 ~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkq 167 (245)
..+++.+||+||++. +++..|+.||+.++..... .........+.+.++++.+++.+ ..+++++.+|||||||
T Consensus 78 --~~~~~~i~~v~q~~~-~~~~~tv~enl~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG~~q 153 (250)
T PRK14247 78 --IELRRRVQMVFQIPN-PIPNLSIFENVALGLKLNR-LVKSKKELQERVRWALEKAQLWDEVKDRLDAPAGKLSGGQQQ 153 (250)
T ss_pred --HHHhccEEEEeccCc-cCCCCcHHHHHHHHHHhcc-ccCCHHHHHHHHHHHHHHcCCCcchhhhhcCCcccCCHHHHH
Confidence 123567999999985 5677899999987532111 00011233456788999999853 1358899999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 168 RLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 168 rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||+|||||+.+|++|||||||+|||+.+++.+.++|+++.++.|+|++|||++++..+||++++|++|+++..+
T Consensus 154 rv~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 227 (250)
T PRK14247 154 RLCIARALAFQPEVLLADEPTANLDPENTAKIESLFLELKKDMTIVLVTHFPQQAARISDYVAFLYKGQIVEWG 227 (250)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCeEEEEC
Confidence 99999999999999999999999999999999999999876789999999999999999999999999997653
|
|
| >cd03295 ABC_OpuCA_Osmoprotection OpuCA is a the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-53 Score=363.53 Aligned_cols=215 Identities=30% Similarity=0.405 Sum_probs=181.8
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|++++|++. +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..... ...++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~----~~~~~ 75 (242)
T cd03295 1 IEFENVTKRYGGG-KKAVNNLNLEIAKGEFLVLIGPSGSGKTTTMKMINRLIEPTSGEIFIDGEDIREQDP----VELRR 75 (242)
T ss_pred CEEEEEEEEeCCc-ceEeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCeEcCcCCh----HHhhc
Confidence 4789999999742 469999999999999999999999999999999999999999999999987743211 12246
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC-ccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG-TSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
.++|+||++. +++..|+.||+.++... ... ........+.++++.+++.. ...++++.+|||||||||+|||||+
T Consensus 76 ~i~~~~q~~~-~~~~~tv~e~l~~~~~~-~~~--~~~~~~~~~~~~l~~l~l~~~~~~~~~~~~LS~G~~qrv~laral~ 151 (242)
T cd03295 76 KIGYVIQQIG-LFPHMTVEENIALVPKL-LKW--PKEKIRERADELLALVGLDPAEFADRYPHELSGGQQQRVGVARALA 151 (242)
T ss_pred ceEEEccCcc-ccCCCcHHHHHHHHHHH-cCC--CHHHHHHHHHHHHHHcCCCcHHHHhcChhhCCHHHHHHHHHHHHHh
Confidence 7999999984 66678999999875211 111 11223446788999999985 1368999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
.+|++|||||||+|||+.+++.+.+.|+++.+ +.|||++||+++++..+||++++|++|+++..+
T Consensus 152 ~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~g~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~~ 218 (242)
T cd03295 152 ADPPLLLMDEPFGALDPITRDQLQEEFKRLQQELGKTIVFVTHDIDEAFRLADRIAIMKNGEIVQVG 218 (242)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEec
Confidence 99999999999999999999999999999863 689999999999999999999999999998653
|
ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition, to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03864 PQQ_ABC_ATP ABC transporter, ATP-binding subunit, PQQ-dependent alcohol dehydrogenase system | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-53 Score=361.31 Aligned_cols=212 Identities=29% Similarity=0.444 Sum_probs=180.4
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
+|+++|++++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+
T Consensus 1 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~i~~~~~-----~~~ 73 (236)
T TIGR03864 1 ALEVAGLSFAYGA--RRALDDVSFTVRPGEFVALLGPNGAGKSTLFSLLTRLYVAQEGQISVAGHDLRRAPR-----AAL 73 (236)
T ss_pred CEEEEeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcccCCh-----hhh
Confidence 5889999999964 469999999999999999999999999999999999999999999999987743211 123
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
+.++|+||++. +++..|+.+|+.+..... .. ........+.++++.+|+.+. +++++.+||||||||++|||||+
T Consensus 74 ~~i~~~~q~~~-~~~~~t~~~~l~~~~~~~-~~--~~~~~~~~~~~~l~~~gl~~~-~~~~~~~LS~G~~qrl~laral~ 148 (236)
T TIGR03864 74 ARLGVVFQQPT-LDLDLSVRQNLRYHAALH-GL--SRAEARERIAALLARLGLAER-ADDKVRELNGGHRRRVEIARALL 148 (236)
T ss_pred hhEEEeCCCCC-CcccCcHHHHHHHHHHhc-CC--CHHHHHHHHHHHHHHcCChhh-hcCChhhCCHHHHHHHHHHHHHh
Confidence 57999999984 556789999998752111 11 112233457788999999875 69999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
.+|+++||||||+|||+.+++.+.+.|+++.+ +.|||++||+++++.. ||++++|++|+++..+
T Consensus 149 ~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~-~d~i~~l~~G~i~~~~ 214 (236)
T TIGR03864 149 HRPALLLLDEPTVGLDPASRAAIVAHVRALCRDQGLSVLWATHLVDEIEA-DDRLVVLHRGRVLADG 214 (236)
T ss_pred cCCCEEEEcCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEecChhhHhh-CCEEEEEeCCeEEEeC
Confidence 99999999999999999999999999999863 6899999999999864 9999999999998654
|
Members of this protein family are the ATP-binding subunit of an ABC transporter system that is associated with PQQ biosynthesis and PQQ-dependent alcohol dehydrogenases. While this family shows homology to several efflux ABC transporter subunits, the presence of a periplasmic substrate-binding protein and association with systems for catabolism of alcohols suggests a role in import rather than detoxification. |
| >cd03298 ABC_ThiQ_thiamine_transporter ABC-type thiamine tranport system; part of the binding-protein-dependent transport system tbpA-thiPQ for thiamine and TPP | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-53 Score=355.36 Aligned_cols=208 Identities=29% Similarity=0.443 Sum_probs=177.8
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|++++|++ +. .|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... .++
T Consensus 1 i~~~~l~~~~~~--~~--~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~gl~~~~~G~i~~~g~~~~~~~~------~~~ 70 (211)
T cd03298 1 VRLDKIRFSYGE--QP--MHFDLTFAQGEITAIVGPSGSGKSTLLNLIAGFETPQSGRVLINGVDVTAAPP------ADR 70 (211)
T ss_pred CEEEeEEEEeCC--Ee--cceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEEcCcCCH------hHc
Confidence 478999999964 22 39999999999999999999999999999999999999999999988753211 135
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ 177 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~ 177 (245)
.++|+||++. +++..|+.||+.++...... . ......++.++++.+++.+. .++++.+||||||||++|||||+.
T Consensus 71 ~i~~~~q~~~-~~~~~tv~enl~~~~~~~~~-~--~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrv~ia~al~~ 145 (211)
T cd03298 71 PVSMLFQENN-LFAHLTVEQNVGLGLSPGLK-L--TAEDRQAIEVALARVGLAGL-EKRLPGELSGGERQRVALARVLVR 145 (211)
T ss_pred cEEEEecccc-cCCCCcHHHHHhcccccccC-c--cHHHHHHHHHHHHHcCCHHH-HhCCcccCCHHHHHHHHHHHHHhc
Confidence 7999999985 66678999999876321111 0 11234467889999999875 689999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEe
Q 035832 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~ 240 (245)
+|++|||||||+|||+.+++.++++|+++.+ +.|||++|||++++..+||++++|++|+++..
T Consensus 146 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~ 210 (211)
T cd03298 146 DKPVLLLDEPFAALDPALRAEMLDLVLDLHAETKMTVLMVTHQPEDAKRLAQRVVFLDNGRIAAQ 210 (211)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHhhhCEEEEEECCEEeec
Confidence 9999999999999999999999999999853 68999999999999999999999999998754
|
Probably responsible for the translocation of thiamine across the membrane. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03262 ABC_HisP_GlnQ_permeases HisP and GlnQ are the ATP-binding components of the bacterial periplasmic histidine and glutamine permeases, repectively | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-54 Score=358.66 Aligned_cols=212 Identities=29% Similarity=0.442 Sum_probs=178.8
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|++++|++ +++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ......++
T Consensus 1 l~~~~l~~~~~~--~~~l~~~s~~i~~G~~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~--~~~~~~~~ 76 (213)
T cd03262 1 IEIKNLHKSFGD--FHVLKGIDLTVKKGEVVVIIGPSGSGKSTLLRCINLLEEPDSGTIIIDGLKLTDDK--KNINELRQ 76 (213)
T ss_pred CEEEEEEEEECC--eEeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccc--hhHHHHHh
Confidence 478999999964 46999999999999999999999999999999999999999999999998764211 01112346
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ 177 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~ 177 (245)
.++|+||++. +++..|+.||+.++...... . ........+.++++.+++.+. +++++.+||||||||++|||||+.
T Consensus 77 ~i~~~~q~~~-~~~~~t~~e~l~~~~~~~~~-~-~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrv~la~al~~ 152 (213)
T cd03262 77 KVGMVFQQFN-LFPHLTVLENITLAPIKVKG-M-SKAEAEERALELLEKVGLADK-ADAYPAQLSGGQQQRVAIARALAM 152 (213)
T ss_pred cceEEecccc-cCCCCcHHHHHHhHHHHhcC-C-CHHHHHHHHHHHHHHcCCHhH-hhhCccccCHHHHHHHHHHHHHhc
Confidence 7999999985 56678999999875211111 1 112234467788999999875 799999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeE
Q 035832 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGF 237 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i 237 (245)
+|++|||||||+|||+.+++.+.++|+++++ +.|||++||+++++..+||++++|++|++
T Consensus 153 ~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tvi~~sh~~~~~~~~~d~i~~l~~g~i 213 (213)
T cd03262 153 NPKVMLFDEPTSALDPELVGEVLDVMKDLAEEGMTMVVVTHEMGFAREVADRVIFMDDGRI 213 (213)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEeCCcC
Confidence 9999999999999999999999999999865 68999999999999999999999999874
|
Histidine permease is a multisubunit complex containing the HisQ and HisM integral membrane subunits and two copies of HisP. HisP has properties intermediate between those of integral and peripheral membrane proteins and is accessible from both sides of the membrane, presumably by its interaction with HisQ and HisM. The two HisP subunits form a homodimer within the complex. The domain structure of the amino acid uptake systems is typical for prokaryote extracellular solute binding protein-dependent uptake systems. All of the amino acid uptake systems also have at least one, and in a few cases, two extracellular solute binding proteins located in the periplasm of Gram-negative bacteria, or attached to the cell membrane of Gram-positive bacteria. The best-studied member of the PAAT (polar amino acid transport) family is the HisJQM |
| >PRK13639 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-53 Score=369.83 Aligned_cols=218 Identities=34% Similarity=0.553 Sum_probs=183.6
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
||+++|++++|++ .+++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++..... ....++
T Consensus 1 ~l~~~~l~~~~~~-~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~~--~~~~~~ 77 (275)
T PRK13639 1 ILETRDLKYSYPD-GTEALKGINFKAEKGEMVALLGPNGAGKSTLFLHFNGILKPTSGEVLIKGEPIKYDKK--SLLEVR 77 (275)
T ss_pred CEEEEEEEEEeCC-CCeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEECccccc--hHHHHH
Confidence 5899999999963 2469999999999999999999999999999999999999999999999988742111 011134
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
+.|+|+||++...++..|+.||+.++.... .. .......++.++++.+++.+. .++++.+|||||+||++|||||+
T Consensus 78 ~~i~~v~q~~~~~~~~~tv~e~i~~~~~~~-~~--~~~~~~~~~~~~l~~~~L~~~-~~~~~~~LS~Gq~qrv~laral~ 153 (275)
T PRK13639 78 KTVGIVFQNPDDQLFAPTVEEDVAFGPLNL-GL--SKEEVEKRVKEALKAVGMEGF-ENKPPHHLSGGQKKRVAIAGILA 153 (275)
T ss_pred hheEEEeeChhhhhccccHHHHHHHHHHHc-CC--CHHHHHHHHHHHHHHCCCchh-hcCChhhCCHHHHHHHHHHHHHh
Confidence 679999999743344679999998752111 11 122334567889999999875 79999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
.+|+++||||||+|||+.++..++++|.++.+ +.|||++|||++++..+||++++|++|+++..+
T Consensus 154 ~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~~til~vtH~~~~~~~~~d~i~~l~~G~i~~~g 219 (275)
T PRK13639 154 MKPEIIVLDEPTSGLDPMGASQIMKLLYDLNKEGITIIISTHDVDLVPVYADKVYVMSDGKIIKEG 219 (275)
T ss_pred cCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999864 689999999999999999999999999998754
|
|
| >PRK11614 livF leucine/isoleucine/valine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-53 Score=362.96 Aligned_cols=216 Identities=24% Similarity=0.333 Sum_probs=181.5
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
.+||+++|++++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ...
T Consensus 3 ~~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~---~~~ 77 (237)
T PRK11614 3 KVMLSFDKVSAHYGK--IQALHEVSLHINQGEIVTLIGANGAGKTTLLGTLCGDPRATSGRIVFDGKDITDWQT---AKI 77 (237)
T ss_pred ccEEEEEeEEEeeCC--ceeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCceEEECCEecCCCCH---HHH
Confidence 458999999999964 469999999999999999999999999999999999999999999999987643211 111
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHc-CCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWV-GLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
+++.++|+||++. +++..|+.+|+.++.... . .......+.++++.+ ++.+. .++++.+||||||||++|||
T Consensus 78 ~~~~i~~~~q~~~-~~~~~tv~~~l~~~~~~~--~---~~~~~~~~~~~l~~~~~l~~~-~~~~~~~LS~G~~qrl~la~ 150 (237)
T PRK11614 78 MREAVAIVPEGRR-VFSRMTVEENLAMGGFFA--E---RDQFQERIKWVYELFPRLHER-RIQRAGTMSGGEQQMLAIGR 150 (237)
T ss_pred HHhCEEEeccCcc-cCCCCcHHHHHHHhhhcc--C---hhHHHHHHHHHHHHHHHHHHH-HhCchhhCCHHHHHHHHHHH
Confidence 2467999999984 666789999998753111 1 111233456667777 47654 57899999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
||+.+|++|||||||+|||+.+++.+.+.|+++.+ +.|||++|||++++.++||++++|++|+++..+.
T Consensus 151 al~~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~~ 220 (237)
T PRK11614 151 ALMSQPRLLLLDEPSLGLAPIIIQQIFDTIEQLREQGMTIFLVEQNANQALKLADRGYVLENGHVVLEDT 220 (237)
T ss_pred HHHhCCCEEEEcCccccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHhhCCEEEEEeCCEEEeeCC
Confidence 99999999999999999999999999999999864 6899999999999999999999999999987653
|
|
| >PRK13632 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-53 Score=369.00 Aligned_cols=219 Identities=32% Similarity=0.548 Sum_probs=184.4
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
..+||+++|++++|+++.+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++...+ ..
T Consensus 4 ~~~~l~~~nl~~~~~~~~~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~----~~ 79 (271)
T PRK13632 4 KSVMIKVENVSFSYPNSENNALKNVSFEINEGEYVAILGHNGSGKSTISKILTGLLKPQSGEIKIDGITISKEN----LK 79 (271)
T ss_pred cceEEEEEeEEEEcCCCCccceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEecCcCC----HH
Confidence 45689999999999633357999999999999999999999999999999999999999999999998874321 11
Q ss_pred CCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
.++++++|+||++...++..|+.||+.++.... .. ........+.++++.+++.+. .++++.+||||||||++|||
T Consensus 80 ~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~-~~--~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrl~lar 155 (271)
T PRK13632 80 EIRKKIGIIFQNPDNQFIGATVEDDIAFGLENK-KV--PPKKMKDIIDDLAKKVGMEDY-LDKEPQNLSGGQKQRVAIAS 155 (271)
T ss_pred HHhcceEEEEeCHHHhcCcccHHHHHHhHHHHc-CC--CHHHHHHHHHHHHHHcCCHHH-hhCCcccCCHHHHHHHHHHH
Confidence 235679999999743456789999998752111 11 112234457889999999875 79999999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||+.+|++|||||||+|||+.+++.++++|+++++ +.|||++||+++++. .||++++|++|+++..+
T Consensus 156 al~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~g 224 (271)
T PRK13632 156 VLALNPEIIIFDESTSMLDPKGKREIKKIMVDLRKTRKKTLISITHDMDEAI-LADKVIVFSEGKLIAQG 224 (271)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEEechhHHh-hCCEEEEEECCEEEEec
Confidence 99999999999999999999999999999999864 389999999999985 79999999999997654
|
|
| >PRK10619 histidine/lysine/arginine/ornithine transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-53 Score=365.48 Aligned_cols=223 Identities=27% Similarity=0.370 Sum_probs=185.2
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCC-----
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPN----- 88 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~----- 88 (245)
.+.+|+++||++.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.....
T Consensus 2 ~~~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~ 79 (257)
T PRK10619 2 SENKLNVIDLHKRYGE--HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSEGSIVVNGQTINLVRDKDGQL 79 (257)
T ss_pred CCccEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEccccccccccc
Confidence 3557999999999964 569999999999999999999999999999999999999999999999987642110
Q ss_pred ---C-CCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChH
Q 035832 89 ---N-SPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGG 164 (245)
Q Consensus 89 ---~-~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG 164 (245)
. .....++++++|+||++. +++..|++||+.++....... .......++.++++.+|+.+...++++.+||||
T Consensus 80 ~~~~~~~~~~~~~~i~~v~q~~~-l~~~~sv~enl~~~~~~~~~~--~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~G 156 (257)
T PRK10619 80 KVADKNQLRLLRTRLTMVFQHFN-LWSHMTVLENVMEAPIQVLGL--SKQEARERAVKYLAKVGIDERAQGKYPVHLSGG 156 (257)
T ss_pred ccccchHHHHHhhceEEEecCcc-cCCCCcHHHHHHHHHHHhCCC--CHHHHHHHHHHHHHHcCCChhhhhCCcccCCHH
Confidence 0 001123467999999985 566789999997642110011 122334567889999999864237889999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 165 YKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 165 qkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||||++|||||+.+|++|||||||+|||+.+++.+.++|+++++ +.|||++|||++++..+|||+++|++|+++..+
T Consensus 157 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~ 234 (257)
T PRK10619 157 QQQRVSIARALAMEPEVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEG 234 (257)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999864 689999999999999999999999999998754
|
|
| >PRK14242 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-53 Score=364.03 Aligned_cols=221 Identities=28% Similarity=0.432 Sum_probs=182.6
Q ss_pred CCcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCcceEEEcCccCCCCC
Q 035832 13 CDYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK-----PTSGSINIRGYNNDGEP 87 (245)
Q Consensus 13 ~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~ 87 (245)
..+|+|+++|++++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++...+
T Consensus 2 ~~~~~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 79 (253)
T PRK14242 2 ASPPKMEARGLSFFYGD--FQALHDISLEFEQNQVTALIGPSGCGKSTFLRCLNRMNDLIPGARVEGEILLDGENIYDPH 79 (253)
T ss_pred CCCcEEEEeeeEEEECC--eeeecceeEEEeCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCCceEEEECCEEccccc
Confidence 35678999999999964 469999999999999999999999999999999999974 58999999998874311
Q ss_pred CCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC---ccCCCCCCCCChH
Q 035832 88 NNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG---TSLDKDPHSLSGG 164 (245)
Q Consensus 88 ~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgG 164 (245)
. ....+++.++|+||++. .++ .|+.||+.++.... ... ......+++.++++.+++.+ ..+++++.+||||
T Consensus 80 ~--~~~~~~~~i~~v~q~~~-~~~-~tv~enl~~~~~~~-~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG 153 (253)
T PRK14242 80 V--DVVELRRRVGMVFQKPN-PFP-KSIFENVAYGLRVN-GVK-DKAYLAERVERSLRHAALWDEVKDRLHESALGLSGG 153 (253)
T ss_pred c--CHHHHhhcEEEEecCCC-CCc-CcHHHHHHHHHHHc-CCC-CHHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHH
Confidence 1 11123567999999984 454 69999998752111 110 11223456778899999843 1257889999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 165 YKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 165 qkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|||||+|||||+.+|++|||||||+|||+.+++.+.++|++++++.|||++|||++++..+||++++|++|+++..+
T Consensus 154 q~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~g 230 (253)
T PRK14242 154 QQQRLCIARALAVEPEVLLMDEPASALDPIATQKIEELIHELKARYTIIIVTHNMQQAARVSDVTAFFYMGKLIEVG 230 (253)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCeEEEEEecHHHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999976789999999999999999999999999998653
|
|
| >PRK10575 iron-hydroxamate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-53 Score=367.12 Aligned_cols=220 Identities=27% Similarity=0.366 Sum_probs=184.8
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
..++|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... .
T Consensus 8 ~~~~l~i~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~----~ 81 (265)
T PRK10575 8 SDTTFALRNVSFRVPG--RTLLHPLSLTFPAGKVTGLIGHNGSGKSTLLKMLGRHQPPSEGEILLDAQPLESWSS----K 81 (265)
T ss_pred CCceEEEeeEEEEECC--EEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEehhhCCH----H
Confidence 3457999999999964 469999999999999999999999999999999999999999999999987643211 1
Q ss_pred CCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCc-hhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHH
Q 035832 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGS-IQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALA 172 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iA 172 (245)
.+++.++|+||++. +++.+|+.+|+.++....... .........++.++++.+++.+. .++++.+|||||||||+||
T Consensus 82 ~~~~~i~~v~q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgG~~qrv~la 159 (265)
T PRK10575 82 AFARKVAYLPQQLP-AAEGMTVRELVAIGRYPWHGALGRFGAADREKVEEAISLVGLKPL-AHRLVDSLSGGERQRAWIA 159 (265)
T ss_pred HHhhheEEeccCCC-CCCCccHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHH-hcCCcccCCHHHHHHHHHH
Confidence 23467999999974 566789999998753211000 00011223457889999999864 6999999999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-c-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 173 IQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLK-K-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 173 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|||+.+|++|||||||+|||+.+++.++++|.++. + +.|||++||+++++..+||++++|++|+++..+
T Consensus 160 ral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~~~~tiii~sH~~~~i~~~~d~i~~l~~G~i~~~~ 230 (265)
T PRK10575 160 MLVAQDSRCLLLDEPTSALDIAHQVDVLALVHRLSQERGLTVIAVLHDINMAARYCDYLVALRGGEMIAQG 230 (265)
T ss_pred HHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCeEEEec
Confidence 99999999999999999999999999999999985 3 689999999999999999999999999997654
|
|
| >PRK13648 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-53 Score=367.67 Aligned_cols=219 Identities=31% Similarity=0.466 Sum_probs=184.3
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
..++|+++|++++|++..+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... ..
T Consensus 4 ~~~~l~i~~l~~~~~~~~~~~l~~isl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~~~~~~----~~ 79 (269)
T PRK13648 4 KNSIIVFKNVSFQYQSDASFTLKDVSFNIPKGQWTSIVGHNGSGKSTIAKLMIGIEKVKSGEIFYNNQAITDDN----FE 79 (269)
T ss_pred CCceEEEEEEEEEcCCCCCcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCcCC----HH
Confidence 36689999999999753345899999999999999999999999999999999999999999999998874321 11
Q ss_pred CCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
.+++.++|+||++..+++..|+.+|+.++...... ........+.++++.+++.+. .++++.+||||||||++|||
T Consensus 80 ~~~~~i~~v~q~~~~~~~~~~v~~~~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrl~lar 155 (269)
T PRK13648 80 KLRKHIGIVFQNPDNQFVGSIVKYDVAFGLENHAV---PYDEMHRRVSEALKQVDMLER-ADYEPNALSGGQKQRVAIAG 155 (269)
T ss_pred HHHhheeEEEeChHHhcccccHHHHHHhhHHhcCC---CHHHHHHHHHHHHHHcCCchh-hhCCcccCCHHHHHHHHHHH
Confidence 23467999999985356678999999875321111 112233457788999999875 69999999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||+.+|++|||||||+|||+.+++.+++.|+++.+ +.|||++||+++++.. ||++++|++|+++..+
T Consensus 156 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~~~tiiivtH~~~~~~~-~d~i~~l~~G~i~~~g 224 (269)
T PRK13648 156 VLALNPSVIILDEATSMLDPDARQNLLDLVRKVKSEHNITIISITHDLSEAME-ADHVIVMNKGTVYKEG 224 (269)
T ss_pred HHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCchHHhc-CCEEEEEECCEEEEec
Confidence 99999999999999999999999999999999863 5899999999999875 9999999999998654
|
|
| >PRK13548 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.3e-53 Score=364.06 Aligned_cols=214 Identities=29% Similarity=0.379 Sum_probs=182.1
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
||+++|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..++
T Consensus 2 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~G~i~~~g~~~~~~~~----~~~~ 75 (258)
T PRK13548 2 MLEARNLSVRLGG--RTLLDDVSLTLRPGEVVAILGPNGAGKSTLLRALSGELSPDSGEVRLNGRPLADWSP----AELA 75 (258)
T ss_pred eEEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcccCCH----HHhh
Confidence 6899999999974 469999999999999999999999999999999999999999999999987643211 1224
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
+.++|+||++. +++..|++||+.++....... .......+.++++.+++.+. .++++.+|||||||||+|||||+
T Consensus 76 ~~i~~~~q~~~-~~~~~tv~e~l~~~~~~~~~~---~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgGe~qrv~la~al~ 150 (258)
T PRK13548 76 RRRAVLPQHSS-LSFPFTVEEVVAMGRAPHGLS---RAEDDALVAAALAQVDLAHL-AGRDYPQLSGGEQQRVQLARVLA 150 (258)
T ss_pred hheEEEccCCc-CCCCCCHHHHHHhhhcccCCC---cHHHHHHHHHHHHHcCCHhH-hcCCcccCCHHHHHHHHHHHHHh
Confidence 57999999985 456789999998753211110 11223457788999999865 69999999999999999999999
Q ss_pred ------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-c-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 177 ------QVPDLLILDEPLAGLDWKARADVVKLLKHLK-K-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 177 ------~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
.+|++|||||||+|||+.+++.+.++|+++. + +.|||++|||++++..+||++++|++|+++..+
T Consensus 151 ~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~ 223 (258)
T PRK13548 151 QLWEPDGPPRWLLLDEPTSALDLAHQHHVLRLARQLAHERGLAVIVVLHDLNLAARYADRIVLLHQGRLVADG 223 (258)
T ss_pred cccccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhcCEEEEEECCEEEeeC
Confidence 5999999999999999999999999999986 4 589999999999999999999999999998653
|
|
| >PRK13644 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-53 Score=368.99 Aligned_cols=216 Identities=30% Similarity=0.433 Sum_probs=182.3
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
||+++|++++|++. +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++..... ...++
T Consensus 1 ml~~~~l~~~~~~~-~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~---~~~~~ 76 (274)
T PRK13644 1 MIRLENVSYSYPDG-TPALENINLVIKKGEYIGIIGKNGSGKSTLALHLNGLLRPQKGKVLVSGIDTGDFSK---LQGIR 76 (274)
T ss_pred CEEEEEEEEEcCCC-CceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEECCcccc---HHHHH
Confidence 58999999999632 469999999999999999999999999999999999999999999999987743210 11234
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
+.+||+||++...++..|+.+|+.++.... .. ......+.+.++++.+|+.+. .++++.+||||||||++|||||+
T Consensus 77 ~~i~~v~q~~~~~~~~~tv~enl~~~~~~~-~~--~~~~~~~~~~~~l~~~gl~~~-~~~~~~~LS~G~~qrv~laral~ 152 (274)
T PRK13644 77 KLVGIVFQNPETQFVGRTVEEDLAFGPENL-CL--PPIEIRKRVDRALAEIGLEKY-RHRSPKTLSGGQGQCVALAGILT 152 (274)
T ss_pred hheEEEEEChhhhcccchHHHHHHhhHHHc-CC--CHHHHHHHHHHHHHHCCCHHH-hcCCcccCCHHHHHHHHHHHHHH
Confidence 679999999853456789999998752111 11 122334567888999999875 69999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
.+|++|||||||+|||+.++..+++.|+++++ +.|||++|||++++ ..||++++|++|+++..+
T Consensus 153 ~~p~lllLDEPt~gLD~~~~~~l~~~l~~l~~~g~til~~tH~~~~~-~~~d~v~~l~~G~i~~~g 217 (274)
T PRK13644 153 MEPECLIFDEVTSMLDPDSGIAVLERIKKLHEKGKTIVYITHNLEEL-HDADRIIVMDRGKIVLEG 217 (274)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHH-hhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999864 68999999999998 469999999999998654
|
|
| >TIGR02769 nickel_nikE nickel import ATP-binding protein NikE | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-53 Score=368.02 Aligned_cols=222 Identities=29% Similarity=0.393 Sum_probs=182.7
Q ss_pred eEEEEeEEEECCCC-------ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCC
Q 035832 17 CLEVRDVSYRPPGT-------QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNN 89 (245)
Q Consensus 17 ~l~~~~l~~~y~~~-------~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~ 89 (245)
||+++||+++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++......
T Consensus 2 ~l~~~~l~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~ 81 (265)
T TIGR02769 2 LLEVRDVTHTYRTGGLFGAKQRAPVLTNVSLSIEEGETVGLLGRSGCGKSTLARLLLGLEKPAQGTVSFRGQDLYQLDRK 81 (265)
T ss_pred eEEEEeEEEEeccCccccccCceEEeeCceeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEccccCHH
Confidence 68999999999631 35799999999999999999999999999999999999999999999999887532211
Q ss_pred CCCCCCCCcEEEEecCCC-CCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHH
Q 035832 90 SPEPLPPEKVGIVFQFPE-RYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRR 168 (245)
Q Consensus 90 ~~~~~~~~~i~~v~Q~~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqr 168 (245)
. ...+++.++|+||++. .+++..|+.+|+.+....... . .......++.++++.+|+....+++++.+||||||||
T Consensus 82 ~-~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~-~-~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LSgGe~qr 158 (265)
T TIGR02769 82 Q-RRAFRRDVQLVFQDSPSAVNPRMTVRQIIGEPLRHLTS-L-DESEQKARIAELLDMVGLRSEDADKLPRQLSGGQLQR 158 (265)
T ss_pred H-HHHHhhceEEEecChhhhcCCCCCHHHHHHHHHHHhcC-C-CHHHHHHHHHHHHHHcCCChhhhhCChhhCCHHHHHH
Confidence 0 0112467999999973 244568999998764211100 0 1122344678899999996323689999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 169 LALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 169 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|+|||||+.+|++|||||||++||+.+++.++++|+++.+ +.|||++|||++++..+||++++|++|+++..+
T Consensus 159 v~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 233 (265)
T TIGR02769 159 INIARALAVKPKLIVLDEAVSNLDMVLQAVILELLRKLQQAFGTAYLFITHDLRLVQSFCQRVAVMDKGQIVEEC 233 (265)
T ss_pred HHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHHhcEEEEEeCCEEEEEC
Confidence 9999999999999999999999999999999999999864 689999999999999999999999999998754
|
This family represents the NikE subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. |
| >PRK11124 artP arginine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-53 Score=361.98 Aligned_cols=219 Identities=25% Similarity=0.365 Sum_probs=182.6
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCC-CC-CCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEP-NN-SPEPL 94 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~-~~-~~~~~ 94 (245)
+|+++|+++.|++ +.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... .. .....
T Consensus 2 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 79 (242)
T PRK11124 2 SIQLNGINCFYGA--HQALFDITLDCPQGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRE 79 (242)
T ss_pred EEEEEeeEEEECC--eeeEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccccccchhhHHH
Confidence 6999999999964 46999999999999999999999999999999999999999999999998763110 00 00011
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
.+++++|+||++. +++..|+.||+.+........ ........+.++++.+|+... .++++.+||||||||++||||
T Consensus 80 ~~~~i~~~~q~~~-~~~~~tv~e~i~~~~~~~~~~--~~~~~~~~~~~~l~~~gl~~~-~~~~~~~LS~G~~qrv~lara 155 (242)
T PRK11124 80 LRRNVGMVFQQYN-LWPHLTVQQNLIEAPCRVLGL--SKDQALARAEKLLERLRLKPY-ADRFPLHLSGGQQQRVAIARA 155 (242)
T ss_pred HHhheEEEecCcc-ccCCCcHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHcCChhh-hhCChhhCCHHHHHHHHHHHH
Confidence 2467999999985 666789999997531110111 112234467888999999875 699999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|+.+|+++||||||+|||+.+++.+.++|+++++ ++|+|++|||++++..+||++++|++|+++..+
T Consensus 156 l~~~p~llilDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~i~~~~ 223 (242)
T PRK11124 156 LMMEPQVLLFDEPTAALDPEITAQIVSIIRELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQG 223 (242)
T ss_pred HhcCCCEEEEcCCCCcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999864 689999999999999999999999999998654
|
|
| >TIGR01188 drrA daunorubicin resistance ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-53 Score=376.38 Aligned_cols=205 Identities=29% Similarity=0.418 Sum_probs=175.2
Q ss_pred EECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEec
Q 035832 25 YRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQ 104 (245)
Q Consensus 25 ~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q 104 (245)
++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.... ...++++||+||
T Consensus 1 k~y~~--~~~l~~vs~~i~~Ge~~~l~G~NGaGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~-----~~~~~~i~~~~q 73 (302)
T TIGR01188 1 KVYGD--FKAVDGVNFKVREGEVFGFLGPNGAGKTTTIRMLTTLLRPTSGTARVAGYDVVREP-----RKVRRSIGIVPQ 73 (302)
T ss_pred CeeCC--eeEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEcccCH-----HHHHhhcEEecC
Confidence 35643 46999999999999999999999999999999999999999999999998874311 112467999999
Q ss_pred CCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEE
Q 035832 105 FPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLIL 184 (245)
Q Consensus 105 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llll 184 (245)
++. +++.+|+.||+.+..... .. .......++.++++.+++.+. .++++.+|||||||||+|||||+.+|++|||
T Consensus 74 ~~~-~~~~~tv~e~l~~~~~~~-~~--~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgG~~qrv~la~al~~~p~lllL 148 (302)
T TIGR01188 74 YAS-VDEDLTGRENLEMMGRLY-GL--PKDEAEERAEELLELFELGEA-ADRPVGTYSGGMRRRLDIAASLIHQPDVLFL 148 (302)
T ss_pred CCC-CCCCCcHHHHHHHHHHHc-CC--CHHHHHHHHHHHHHHcCChhH-hCCchhhCCHHHHHHHHHHHHHhcCCCEEEE
Confidence 984 667789999998742111 11 112234467889999999875 6999999999999999999999999999999
Q ss_pred eCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 185 DEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 185 DEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||||+|||+.+++.++++|+++++ +.|||++||+++++..+||++++|++|+++..+
T Consensus 149 DEPt~gLD~~~~~~l~~~l~~~~~~g~tvi~~sH~~~~~~~~~d~v~~l~~G~i~~~g 206 (302)
T TIGR01188 149 DEPTTGLDPRTRRAIWDYIRALKEEGVTILLTTHYMEEADKLCDRIAIIDHGRIIAEG 206 (302)
T ss_pred eCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999864 689999999999999999999999999998754
|
This model describes daunorubicin resistance ABC transporter, ATP binding subunit in bacteria and archaea. This model is restricted in its scope to preferentially recognize the ATP binding subunit associated with effux of the drug, daunorubicin. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. In eukaryotes proteins of similar function include p-gyco proteins, multidrug resistance protein etc. |
| >PRK14273 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-53 Score=363.40 Aligned_cols=220 Identities=25% Similarity=0.374 Sum_probs=182.8
Q ss_pred CCcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CcceEEEcCccCCCCC
Q 035832 13 CDYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP-----TSGSINIRGYNNDGEP 87 (245)
Q Consensus 13 ~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~~~~~ 87 (245)
..+++|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++....
T Consensus 3 ~~~~~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 80 (254)
T PRK14273 3 KNEAIIETENLNLFYTD--FKALNNINIKILKNSITALIGPSGCGKSTFLRTLNRMNDLVEGIKIEGNVIYEGKNIYSNN 80 (254)
T ss_pred CCCceEEEeeeEEEeCC--ceeecceeeEEcCCCEEEEECCCCCCHHHHHHHHhccccCCcCCCCceEEEECCEeccccc
Confidence 45668999999999964 4699999999999999999999999999999999999997 4899999998764211
Q ss_pred CCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCC----CccCCCCCCCCCh
Q 035832 88 NNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLD----GTSLDKDPHSLSG 163 (245)
Q Consensus 88 ~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~~LSg 163 (245)
. .....++.++|+||++. .+ ..|++||+.++.... ... ........+.++++.+++. +. +++++.+|||
T Consensus 81 ~--~~~~~~~~i~~v~q~~~-~~-~~tv~eni~~~~~~~-~~~-~~~~~~~~~~~~l~~~~l~~~l~~~-~~~~~~~LSg 153 (254)
T PRK14273 81 F--DILELRRKIGMVFQTPN-PF-LMSIYDNISYGPKIH-GTK-DKKKLDEIVEQSLKKSALWNEVKDK-LNTNALSLSG 153 (254)
T ss_pred c--cHHHHhhceEEEeeccc-cc-cCcHHHHHHHHHHhc-CCC-CHHHHHHHHHHHHHHhCCchhhHHH-HhCCcccCCH
Confidence 1 11123567999999985 44 589999998763111 110 1122345577888888873 33 5889999999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 164 GYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 164 Gqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||||||+|||||+.+|++|||||||+|||+.++..++++|++++++.|||++||+++++..+|||+++|++|+++..+
T Consensus 154 G~~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tvii~sH~~~~~~~~~d~i~~l~~G~i~~~g 231 (254)
T PRK14273 154 GQQQRLCIARTLAIEPNVILMDEPTSALDPISTGKIEELIINLKESYTIIIVTHNMQQAGRISDRTAFFLNGCIEEES 231 (254)
T ss_pred HHHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999999976789999999999999999999999999998754
|
|
| >PRK10895 lipopolysaccharide ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-53 Score=361.39 Aligned_cols=217 Identities=22% Similarity=0.363 Sum_probs=184.0
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
++|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++...+. ....
T Consensus 2 ~~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~---~~~~ 76 (241)
T PRK10895 2 ATLTAKNLAKAYKG--RRVVEDVSLTVNSGEIVGLLGPNGAGKTTTFYMVVGIVPRDAGNIIIDDEDISLLPL---HARA 76 (241)
T ss_pred ceEEEeCcEEEeCC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH---HHHH
Confidence 47999999999964 469999999999999999999999999999999999999999999999988743221 0112
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
++.++|+||++. +++..|+.||+.+..... ... ........+.++++.+++.+. .++++.+|||||||||+|||||
T Consensus 77 ~~~i~~~~q~~~-~~~~~tv~enl~~~~~~~-~~~-~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrv~laral 152 (241)
T PRK10895 77 RRGIGYLPQEAS-IFRRLSVYDNLMAVLQIR-DDL-SAEQREDRANELMEEFHIEHL-RDSMGQSLSGGERRRVEIARAL 152 (241)
T ss_pred HhCeEEeccCCc-ccccCcHHHHHhhhhhcc-ccc-CHHHHHHHHHHHHHHcCCHHH-hhcchhhCCHHHHHHHHHHHHH
Confidence 457999999984 566789999998752111 000 112234567889999999875 6899999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+.+|++|||||||++||+.+++.++++++++++ +.|||++||+++++..+||++++|++|+++..+
T Consensus 153 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~ 219 (241)
T PRK10895 153 AANPKFILLDEPFAGVDPISVIDIKRIIEHLRDSGLGVLITDHNVRETLAVCERAYIVSQGHLIAHG 219 (241)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEeCCeEEeeC
Confidence 999999999999999999999999999999864 689999999999999999999999999998654
|
|
| >PRK13640 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-53 Score=370.06 Aligned_cols=218 Identities=33% Similarity=0.542 Sum_probs=184.6
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCc---ceEEEcCccCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTS---GSINIRGYNNDGEPNNSP 91 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~ 91 (245)
+++|+++|+++.|++..+++|+++||+|++||+++|+||||||||||+++|+|+++|++ |+|+++|+++.....
T Consensus 3 ~~~l~i~~l~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGaGKSTLl~~l~G~~~p~~g~~G~i~i~g~~~~~~~~--- 79 (282)
T PRK13640 3 DNIVEFKHVSFTYPDSKKPALNDISFSIPRGSWTALIGHNGSGKSTISKLINGLLLPDDNPNSKITVDGITLTAKTV--- 79 (282)
T ss_pred CceEEEEEEEEEcCCCCccceeeEEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCCCCCcEEEECCEECCcCCH---
Confidence 45799999999996433469999999999999999999999999999999999999987 899999998743211
Q ss_pred CCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHH
Q 035832 92 EPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLAL 171 (245)
Q Consensus 92 ~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~i 171 (245)
...++++||+||++...++..|+.||+.++.... .. ......+++.++++.+||.+. .++++.+|||||+||++|
T Consensus 80 -~~~~~~ig~v~q~~~~~~~~~tv~enl~~~~~~~-~~--~~~~~~~~~~~~l~~~~L~~~-~~~~~~~LS~G~~qrv~l 154 (282)
T PRK13640 80 -WDIREKVGIVFQNPDNQFVGATVGDDVAFGLENR-AV--PRPEMIKIVRDVLADVGMLDY-IDSEPANLSGGQKQRVAI 154 (282)
T ss_pred -HHHHhheEEEEECHHHhhccCCHHHHHHhhHHhC-CC--CHHHHHHHHHHHHHHCCChhH-hcCCcccCCHHHHHHHHH
Confidence 1124679999999853566789999998752211 11 122334567889999999875 799999999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 172 AIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 172 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||||+.+|++|||||||+|||+.++..+.++|+++.+ +.|||++||+++++. +||++++|++|+++..+
T Consensus 155 aral~~~P~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tvli~tH~~~~~~-~~d~i~~l~~G~i~~~g 225 (282)
T PRK13640 155 AGILAVEPKIIILDESTSMLDPAGKEQILKLIRKLKKKNNLTVISITHDIDEAN-MADQVLVLDDGKLLAQG 225 (282)
T ss_pred HHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHH-hCCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999999863 689999999999984 79999999999998764
|
|
| >PRK10253 iron-enterobactin transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-53 Score=366.33 Aligned_cols=220 Identities=22% Similarity=0.327 Sum_probs=184.9
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
...+|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..... .
T Consensus 4 ~~~~l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~----~ 77 (265)
T PRK10253 4 SVARLRGEQLTLGYGK--YTVAENLTVEIPDGHFTAIIGPNGCGKSTLLRTLSRLMTPAHGHVWLDGEHIQHYAS----K 77 (265)
T ss_pred cccEEEEEEEEEEECC--EEEeeecceEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEEhhhCCH----H
Confidence 4557999999999974 469999999999999999999999999999999999999999999999987743211 1
Q ss_pred CCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCc-hhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHH
Q 035832 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGS-IQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALA 172 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iA 172 (245)
.+++.++|+||++. +++..|+.+|+.++....... ....+.....+.++++.+++.+. .++++.+||||||||++||
T Consensus 78 ~~~~~i~~v~q~~~-~~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~Gq~qrv~la 155 (265)
T PRK10253 78 EVARRIGLLAQNAT-TPGDITVQELVARGRYPHQPLFTRWRKEDEEAVTKAMQATGITHL-ADQSVDTLSGGQRQRAWIA 155 (265)
T ss_pred HHhhheEEeeccCc-CCCCCcHHHHHHhCcccccccccCCCHHHHHHHHHHHHHcCCHHH-hcCCcccCChHHHHHHHHH
Confidence 12357999999985 566789999998752111000 00011223457789999999874 6999999999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 173 IQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 173 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||++.+|+++||||||+|||+.+++.+.++|.++.+ +.|||++|||++++.++||++++|++|+++..+
T Consensus 156 ral~~~p~llllDEPt~gLD~~~~~~l~~~L~~l~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g 226 (265)
T PRK10253 156 MVLAQETAIMLLDEPTTWLDISHQIDLLELLSELNREKGYTLAAVLHDLNQACRYASHLIALREGKIVAQG 226 (265)
T ss_pred HHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999864 589999999999999999999999999998654
|
|
| >PRK13645 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.1e-53 Score=369.32 Aligned_cols=223 Identities=27% Similarity=0.440 Sum_probs=181.9
Q ss_pred ceEEEEeEEEECCCCc---cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCC-CC
Q 035832 16 SCLEVRDVSYRPPGTQ---VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNN-SP 91 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~-~~ 91 (245)
..|+++|++++|++.. .++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...... ..
T Consensus 5 ~~l~i~nl~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~~~~~ 84 (289)
T PRK13645 5 KDIILDNVSYTYAKKTPFEFKALNNTSLTFKKNKVTCVIGTTGSGKSTMIQLTNGLIISETGQTIVGDYAIPANLKKIKE 84 (289)
T ss_pred ceEEEEEEEEEeCCCCccccceeeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEcccccccccc
Confidence 3589999999996431 2599999999999999999999999999999999999999999999999886421000 01
Q ss_pred CCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHH
Q 035832 92 EPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLAL 171 (245)
Q Consensus 92 ~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~i 171 (245)
...+++.++|+||++...++..|+.||+.++.... .. ........+.++++.+++.....++++.+||||||||++|
T Consensus 85 ~~~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~-~~--~~~~~~~~~~~ll~~~~L~~~~~~~~~~~LS~Gq~qrv~l 161 (289)
T PRK13645 85 VKRLRKEIGLVFQFPEYQLFQETIEKDIAFGPVNL-GE--NKQEAYKKVPELLKLVQLPEDYVKRSPFELSGGQKRRVAL 161 (289)
T ss_pred HHHHhccEEEEEeCcchhhhhhHHHHHHHHHHHHc-CC--CHHHHHHHHHHHHHHcCCChhHhcCChhhCCHHHHHHHHH
Confidence 11235679999999743334569999998752111 11 1122334567889999995223689999999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 172 AIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 172 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||||+.+|++|||||||+|||+.+++.++++|+++.+ ++|||++||+++++..+||++++|++|+++..+
T Consensus 162 aral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~g 233 (289)
T PRK13645 162 AGIIAMDGNTLVLDEPTGGLDPKGEEDFINLFERLNKEYKKRIIMVTHNMDQVLRIADEVIVMHEGKVISIG 233 (289)
T ss_pred HHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999999853 689999999999999999999999999998654
|
|
| >cd03235 ABC_Metallic_Cations ABC component of the metal-type transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-53 Score=357.39 Aligned_cols=208 Identities=37% Similarity=0.512 Sum_probs=174.2
Q ss_pred EEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCc
Q 035832 19 EVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEK 98 (245)
Q Consensus 19 ~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ 98 (245)
+++|++++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++. .++++
T Consensus 1 ~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~---------~~~~~ 69 (213)
T cd03235 1 EVEDLTVSYGG--HPVLEDVSFEVKPGEFLAIVGPNGAGKSTLLKAILGLLKPTSGSIRVFGKPLE---------KERKR 69 (213)
T ss_pred CcccceeEECC--EEeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCccHH---------HHHhh
Confidence 36899999964 46999999999999999999999999999999999999999999999997653 12457
Q ss_pred EEEEecCCCCC-CCcccHHHHHHhcCCCCCCch-hHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 99 VGIVFQFPERY-FVADNVLDEVIFGWPRQSGSI-QLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 99 i~~v~Q~~~~~-~~~~tv~e~l~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
++|+||++... ++..|+.||+.++........ .......+++.++++.+++.+. .++++.+||||||||++|||||+
T Consensus 70 i~~v~q~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgG~~qrv~la~al~ 148 (213)
T cd03235 70 IGYVPQRRSIDRDFPISVRDVVLMGLYGHKGLFRRLSKADKAKVDEALERVGLSEL-ADRQIGELSGGQQQRVLLARALV 148 (213)
T ss_pred eEEeccccccccCCCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCHHH-HhCCcccCCHHHHHHHHHHHHHH
Confidence 99999998521 134799999988632110000 0011233467889999999864 68999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-cCceEEEEecChhHHHhhccEEEEEeCCeEEE
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLK-KELTILVVSHDLKEMAALVDHSWRMDMGGFLV 239 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~ 239 (245)
.+|++|||||||+|||+.+++.+.+.|++++ ++.|||++|||++++..+||++++|++| ++.
T Consensus 149 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~~-~~~ 211 (213)
T cd03235 149 QDPDLLLLDEPFAGVDPKTQEDIYELLRELRREGMTILVVTHDLGLVLEYFDRVLLLNRT-VVA 211 (213)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEcCc-Eee
Confidence 9999999999999999999999999999986 4689999999999999999999999875 443
|
This family includes transporters involved in the uptake of various metallic cations such as iron, manganese, and zinc. The ATPases of this group of transporters are very similar to members of iron-siderophore uptake family suggesting that they share a common ancestor. The best characterized metal-type ABC transporters are the YfeABCD system of Y. pestis, the SitABCD system of Salmonella enterica serovar Typhimurium, and the SitABCD transporter of Shigella flexneri. Moreover other uncharacterized homologs of these metal-type transporters are mainly found in pathogens like Haemophilus or enteroinvasive E. coli isolates. |
| >PRK11231 fecE iron-dicitrate transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-53 Score=364.72 Aligned_cols=217 Identities=24% Similarity=0.320 Sum_probs=182.7
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
||+++|++++|++ +++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..++
T Consensus 2 ~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~----~~~~ 75 (255)
T PRK11231 2 TLRTENLTVGYGT--KRILNDLSLSLPTGKITALIGPNGCGKSTLLKCFARLLTPQSGTVFLGDKPISMLSS----RQLA 75 (255)
T ss_pred EEEEEeEEEEECC--EEEEeeeeeEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCCcEEEECCEEhHHCCH----HHHh
Confidence 6999999999964 469999999999999999999999999999999999999999999999987643211 1124
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCC-chhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSG-SIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
+.++|+||++. +++..|+.+|+.++...... ...........+.++++.+++.+. .++++.+|||||+||++||||+
T Consensus 76 ~~i~~~~q~~~-~~~~~tv~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrv~laral 153 (255)
T PRK11231 76 RRLALLPQHHL-TPEGITVRELVAYGRSPWLSLWGRLSAEDNARVNQAMEQTRINHL-ADRRLTDLSGGQRQRAFLAMVL 153 (255)
T ss_pred hheEEecccCC-CCCCccHHHHHHhccchhhhhccCCCHHHHHHHHHHHHHcCCHHH-HcCCcccCCHHHHHHHHHHHHH
Confidence 57999999974 55667999999875211000 000011233457788999999875 6999999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+.+|++|||||||+|||+.+++.+.++|+++.+ +.|||++||+++++.++||++++|++|+++..+
T Consensus 154 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~l~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~~ 220 (255)
T PRK11231 154 AQDTPVVLLDEPTTYLDINHQVELMRLMRELNTQGKTVVTVLHDLNQASRYCDHLVVLANGHVMAQG 220 (255)
T ss_pred hcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEECCHHHHHHhcCEEEEEECCeEEEEc
Confidence 999999999999999999999999999999864 689999999999999999999999999998653
|
|
| >PRK14250 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-53 Score=360.40 Aligned_cols=211 Identities=29% Similarity=0.455 Sum_probs=180.0
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
++|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... ..+
T Consensus 2 ~~l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~----~~~ 75 (241)
T PRK14250 2 NEIEFKEVSYSSFG--KEILKDISVKFEGGAIYTIVGPSGAGKSTLIKLINRLIDPTEGSILIDGVDIKTIDV----IDL 75 (241)
T ss_pred ceEEEEeEEEEeCC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEhhhcCh----HHh
Confidence 46999999999964 469999999999999999999999999999999999999999999999988753221 123
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
++.++|+||++. ++ ..|+.+|+.++... . .. ...++.++++.+++.....++++.+||||||||++|||||
T Consensus 76 ~~~i~~~~q~~~-~~-~~tv~e~l~~~~~~-~-~~-----~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrl~la~al 146 (241)
T PRK14250 76 RRKIGMVFQQPH-LF-EGTVKDNIEYGPML-K-GE-----KNVDVEYYLSIVGLNKEYATRDVKNLSGGEAQRVSIARTL 146 (241)
T ss_pred hhcEEEEecCch-hc-hhhHHHHHhcchhh-c-Cc-----HHHHHHHHHHHcCCCHHHhhCCcccCCHHHHHHHHHHHHH
Confidence 467999999984 44 47999999875211 1 10 1235678899999963236889999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+.+|++|||||||++||+.+++.+.+.|+++.+ +.|||++|||++++..+||++++|++|+++..+
T Consensus 147 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~~ 214 (241)
T PRK14250 147 ANNPEVLLLDEPTSALDPTSTEIIEELIVKLKNKMNLTVIWITHNMEQAKRIGDYTAFLNKGILVEYA 214 (241)
T ss_pred hcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHHHHhCCEEEEEeCCEEEEeC
Confidence 999999999999999999999999999999863 689999999999999999999999999998653
|
|
| >PRK13633 cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-53 Score=368.06 Aligned_cols=218 Identities=32% Similarity=0.488 Sum_probs=183.6
Q ss_pred ceEEEEeEEEECCCC----ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGT----QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSP 91 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~----~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 91 (245)
+||+++|++++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.....
T Consensus 3 ~~l~~~~l~~~~~~~~~~~~~~vl~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~--- 79 (280)
T PRK13633 3 EMIKCKNVSYKYESNEESTEKLALDDVNLEVKKGEFLVILGRNGSGKSTIAKHMNALLIPSEGKVYVDGLDTSDEEN--- 79 (280)
T ss_pred ceEEEeeeEEEcCCCCCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccc---
Confidence 579999999999642 2469999999999999999999999999999999999999999999999988743210
Q ss_pred CCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHH
Q 035832 92 EPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLAL 171 (245)
Q Consensus 92 ~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~i 171 (245)
....++++||+||++...+...++.+|+.++.... .. ........+.++++.+|+.+. +++++.+||||||||++|
T Consensus 80 ~~~~~~~i~~v~q~~~~~~~~~~v~~~l~~~~~~~-~~--~~~~~~~~~~~~l~~~gL~~~-~~~~~~~LS~G~~qrv~l 155 (280)
T PRK13633 80 LWDIRNKAGMVFQNPDNQIVATIVEEDVAFGPENL-GI--PPEEIRERVDESLKKVGMYEY-RRHAPHLLSGGQKQRVAI 155 (280)
T ss_pred HHHHhhheEEEecChhhhhccccHHHHHHhhHhhc-CC--CHHHHHHHHHHHHHHCCCHhH-hhCCcccCCHHHHHHHHH
Confidence 11235679999999853344568999998862211 11 122334567889999999875 799999999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 172 AIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 172 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||||+.+|+++||||||+|||+.++..+++.|+++++ +.|||++|||++++.. ||++++|++|+++..+
T Consensus 156 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~g~tillvtH~~~~~~~-~d~v~~l~~G~i~~~g 226 (280)
T PRK13633 156 AGILAMRPECIIFDEPTAMLDPSGRREVVNTIKELNKKYGITIILITHYMEEAVE-ADRIIVMDSGKVVMEG 226 (280)
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecChHHHhc-CCEEEEEECCEEEEec
Confidence 9999999999999999999999999999999999853 6899999999999875 9999999999998754
|
|
| >COG0410 LivF ABC-type branched-chain amino acid transport systems, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-53 Score=351.26 Aligned_cols=216 Identities=28% Similarity=0.423 Sum_probs=186.8
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
+||+++||+..|+. .++|++|||++++||+++|+||||||||||||+|+|+.+|.+|+|.|+|+|+...+.. ...
T Consensus 2 ~mL~v~~l~~~YG~--~~~L~gvsl~v~~Geiv~llG~NGaGKTTlLkti~Gl~~~~~G~I~~~G~dit~~p~~---~r~ 76 (237)
T COG0410 2 PMLEVENLSAGYGK--IQALRGVSLEVERGEIVALLGRNGAGKTTLLKTIMGLVRPRSGRIIFDGEDITGLPPH---ERA 76 (237)
T ss_pred CceeEEeEeecccc--eeEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeeEEECCeecCCCCHH---HHH
Confidence 68999999999975 5799999999999999999999999999999999999999999999999999876432 223
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcC-CCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVG-LDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
+..|+||||.-. .|+.+||.||+.++...... +......++++.+.|- |.+. .+++.++|||||||.++||||
T Consensus 77 r~Gi~~VPegR~-iF~~LTVeENL~~g~~~~~~----~~~~~~~~e~v~~lFP~Lker-~~~~aG~LSGGEQQMLAiaRA 150 (237)
T COG0410 77 RLGIAYVPEGRR-IFPRLTVEENLLLGAYARRD----KEAQERDLEEVYELFPRLKER-RNQRAGTLSGGEQQMLAIARA 150 (237)
T ss_pred hCCeEeCccccc-chhhCcHHHHHhhhhhcccc----cccccccHHHHHHHChhHHHH-hcCcccCCChHHHHHHHHHHH
Confidence 578999999974 78999999999987322111 1111112566677773 5554 699999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
|+.+|++|+|||||.||-|.-.++|++.|+++++ +.||++|.++...+.+++||.++|++|+++.++.
T Consensus 151 Lm~~PklLLLDEPs~GLaP~iv~~I~~~i~~l~~~~g~tIlLVEQn~~~Al~iaDr~yvle~Griv~~G~ 220 (237)
T COG0410 151 LMSRPKLLLLDEPSEGLAPKIVEEIFEAIKELRKEGGMTILLVEQNARFALEIADRGYVLENGRIVLSGT 220 (237)
T ss_pred HhcCCCEEEecCCccCcCHHHHHHHHHHHHHHHHcCCcEEEEEeccHHHHHHhhCEEEEEeCCEEEEecC
Confidence 9999999999999999999999999999999984 4799999999999999999999999999998764
|
|
| >COG4181 Predicted ABC-type transport system involved in lysophospholipase L1 biosynthesis, ATPase component [Secondary metabolites biosynthesis, transport, and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-54 Score=339.23 Aligned_cols=219 Identities=30% Similarity=0.423 Sum_probs=189.9
Q ss_pred ceEEEEeEEEECCC--CccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPG--TQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 16 ~~l~~~~l~~~y~~--~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
.+|+++++++..+. +...||++|+|.|++||.++|+||||||||||+-+++||..|++|+|++.|+++.+........
T Consensus 5 ~ii~~~~l~ktvg~~~~~l~IL~~V~L~v~~Ge~vaiVG~SGSGKSTLl~vlAGLd~~ssGeV~l~G~~L~~ldEd~rA~ 84 (228)
T COG4181 5 NIIEVHHLSKTVGQGEGELSILKGVELVVKRGETVAIVGPSGSGKSTLLAVLAGLDDPSSGEVRLLGQPLHKLDEDARAA 84 (228)
T ss_pred ceeehhhhhhhhcCCCcceeEeecceEEecCCceEEEEcCCCCcHHhHHHHHhcCCCCCCceEEEcCcchhhcCHHHHHH
Confidence 37999999988754 2467999999999999999999999999999999999999999999999999998765544455
Q ss_pred CCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
.+.+++|||||.+. +++.+|..||+..+....... .......+.++|+.+||.+. +..+|.+|||||+|||+|||
T Consensus 85 ~R~~~vGfVFQSF~-Lip~ltAlENV~lPleL~ge~---~~~~~~~A~~lL~~vGLg~R-l~HyP~qLSGGEQQRVAiAR 159 (228)
T COG4181 85 LRARHVGFVFQSFH-LIPNLTALENVALPLELRGES---SADSRAGAKALLEAVGLGKR-LTHYPAQLSGGEQQRVALAR 159 (228)
T ss_pred hhccceeEEEEeee-ccccchhhhhccchhhhcCCc---cccHHHHHHHHHHHhCcccc-cccCccccCchHHHHHHHHH
Confidence 56789999999985 788999999999864322111 12234467889999999985 79999999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEe
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~ 240 (245)
||+..|++|+.||||.+||..+-+++.+++..+++ +.|+|+||||...+. -|+|.+.|.+|+++.+
T Consensus 160 Afa~~P~vLfADEPTGNLD~~Tg~~iaDLlF~lnre~G~TlVlVTHD~~LA~-Rc~R~~r~~~G~l~~~ 227 (228)
T COG4181 160 AFAGRPDVLFADEPTGNLDRATGDKIADLLFALNRERGTTLVLVTHDPQLAA-RCDRQLRLRSGRLVED 227 (228)
T ss_pred HhcCCCCEEeccCCCCCcchhHHHHHHHHHHHHhhhcCceEEEEeCCHHHHH-hhhheeeeecceeccC
Confidence 99999999999999999999999999999999874 589999999998764 6999999999999754
|
|
| >PRK11701 phnK phosphonate C-P lyase system protein PhnK; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-53 Score=364.95 Aligned_cols=223 Identities=26% Similarity=0.319 Sum_probs=181.4
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCcc-----CCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYN-----NDGEPNN 89 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~-----~~~~~~~ 89 (245)
.++|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|++ +......
T Consensus 4 ~~~l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~i~~~~~~ 81 (258)
T PRK11701 4 QPLLSVRGLTKLYGP--RKGCRDVSFDLYPGEVLGIVGESGSGKTTLLNALSARLAPDAGEVHYRMRDGQLRDLYALSEA 81 (258)
T ss_pred CceEEEeeeEEEcCC--ceeeeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCccccccccccCCHH
Confidence 457999999999964 469999999999999999999999999999999999999999999999987 4322110
Q ss_pred CCCCCCCCcEEEEecCCC-CCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHH
Q 035832 90 SPEPLPPEKVGIVFQFPE-RYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRR 168 (245)
Q Consensus 90 ~~~~~~~~~i~~v~Q~~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqr 168 (245)
.....+++.++|+||++. .++...|+.+|+.+........ ........+.++++.+++....+++.+.+||||||||
T Consensus 82 ~~~~~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~Gq~qr 159 (258)
T PRK11701 82 ERRRLLRTEWGFVHQHPRDGLRMQVSAGGNIGERLMAVGAR--HYGDIRATAGDWLERVEIDAARIDDLPTTFSGGMQQR 159 (258)
T ss_pred HHHHHhhcceEEEeeCcccccCccccHHHHHHHHHHHhccC--cHHHHHHHHHHHHHHcCCChhHHhCCCccCCHHHHHH
Confidence 000012456999999974 2345578888886532110000 0112344577889999996423689999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 169 LALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 169 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
++|||||+.+|++|||||||++||+.+++.+++.|+++.+ +.|||++||+++++..+||++++|++|+++..+
T Consensus 160 l~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~isH~~~~~~~~~d~i~~l~~g~i~~~~ 234 (258)
T PRK11701 160 LQIARNLVTHPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLAHRLLVMKQGRVVESG 234 (258)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999999999854 689999999999999999999999999998654
|
|
| >PRK14268 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-53 Score=363.19 Aligned_cols=220 Identities=27% Similarity=0.394 Sum_probs=182.3
Q ss_pred CCcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CcceEEEcCccCCCCC
Q 035832 13 CDYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP-----TSGSINIRGYNNDGEP 87 (245)
Q Consensus 13 ~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~~~~~ 87 (245)
...++|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++....
T Consensus 8 ~~~~~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~i~~~~ 85 (258)
T PRK14268 8 VAQPQIKVENLNLWYGE--KQALKNVSMQIPKNSVTALIGPSGCGKSTFIRCLNRMNDLIKNCRIEGKVSIEGEDIYEPD 85 (258)
T ss_pred ccceeEEEeeeEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCcccCCCcceEEEECCEEccccc
Confidence 34568999999999964 4699999999999999999999999999999999999985 7999999998864311
Q ss_pred CCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC---ccCCCCCCCCChH
Q 035832 88 NNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG---TSLDKDPHSLSGG 164 (245)
Q Consensus 88 ~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgG 164 (245)
. ....+++.++|+||++. ++. .|++||+.++.... .. ........+.++++.+++.. ..+++++.+||||
T Consensus 86 ~--~~~~~~~~i~~v~q~~~-~~~-~tv~enl~~~~~~~-~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG 158 (258)
T PRK14268 86 V--DVVELRKNVGMVFQKPN-PFP-MSIYDNVAYGPRIH-GA--NKKDLDGVVENALRSAALWDETSDRLKSPALSLSGG 158 (258)
T ss_pred c--hHHHHhhhEEEEecCCc-cCc-ccHHHHHHHHHHHc-CC--CHHHHHHHHHHHHHHcCCCcchhhhhcCChhhCCHH
Confidence 1 01123467999999984 454 89999998752111 11 11223345778899998841 1258899999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 165 YKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 165 qkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|||||+|||||+.+|++|||||||+|||+.++..++++|++++++.|||++|||++++..+||++++|++|+++..+
T Consensus 159 ~~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~ 235 (258)
T PRK14268 159 QQQRLCIARTLAVKPKIILFDEPTSALDPISTARIEDLIMNLKKDYTIVIVTHNMQQAARISDYTGFFLMGELIEFG 235 (258)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcccCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999876789999999999999999999999999998654
|
|
| >TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-53 Score=381.72 Aligned_cols=205 Identities=29% Similarity=0.391 Sum_probs=173.3
Q ss_pred cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCc----cCCCCCCCCCCCCCCCcEEEEecCCC
Q 035832 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGY----NNDGEPNNSPEPLPPEKVGIVFQFPE 107 (245)
Q Consensus 32 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~----~~~~~~~~~~~~~~~~~i~~v~Q~~~ 107 (245)
..+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+ ++...+.......++++++|+||++.
T Consensus 37 ~~~l~~vsf~i~~Gei~~I~G~nGsGKSTLlr~L~Gl~~p~~G~I~idG~~~~~~i~~~~~~~l~~~r~~~i~~vfQ~~~ 116 (382)
T TIGR03415 37 VVGVANASLDIEEGEICVLMGLSGSGKSSLLRAVNGLNPVSRGSVLVKDGDGSIDVANCDAATLRRLRTHRVSMVFQKFA 116 (382)
T ss_pred EEEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEecccccccCCHHHHHHHhcCCEEEEECCCc
Confidence 46899999999999999999999999999999999999999999999996 33222111111122357999999985
Q ss_pred CCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCC
Q 035832 108 RYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEP 187 (245)
Q Consensus 108 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEP 187 (245)
+++..|+.||+.++.... .. ...+...++.++++.+||.+. .++++.+|||||||||+|||||+.+|++||||||
T Consensus 117 -l~p~~Tv~eNi~~~~~~~-g~--~~~~~~~~a~e~le~vgL~~~-~~~~~~~LSgGq~QRV~LARALa~~P~ILLlDEP 191 (382)
T TIGR03415 117 -LMPWLTVEENVAFGLEMQ-GM--PEAERRKRVDEQLELVGLAQW-ADKKPGELSGGMQQRVGLARAFAMDADILLMDEP 191 (382)
T ss_pred -CCCCCcHHHHHHHHHHhc-CC--CHHHHHHHHHHHHHHcCCchh-hcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECC
Confidence 677799999999873211 11 122334567889999999875 7999999999999999999999999999999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 188 LAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 188 ts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|++||+.++.++++.|.++.+ ++|||++|||++++.++||++++|++|+++..+
T Consensus 192 ts~LD~~~r~~l~~~L~~l~~~~~~TII~iTHdl~e~~~l~DrI~vl~~G~iv~~g 247 (382)
T TIGR03415 192 FSALDPLIRTQLQDELLELQAKLNKTIIFVSHDLDEALKIGNRIAIMEGGRIIQHG 247 (382)
T ss_pred CccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEec
Confidence 999999999999999999864 589999999999999999999999999998754
|
Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines. |
| >PRK14267 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.7e-53 Score=361.86 Aligned_cols=220 Identities=28% Similarity=0.408 Sum_probs=182.0
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CcceEEEcCccCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP-----TSGSINIRGYNNDGEPNNS 90 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~~~~~~~~ 90 (245)
++|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++.....
T Consensus 3 ~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~-- 78 (253)
T PRK14267 3 FAIETVNLRVYYGS--NHVIKGVDLKIPQNGVFALMGPSGCGKSTLLRTFNRLLELNEEARVEGEVRLFGRNIYSPDV-- 78 (253)
T ss_pred ceEEEEeEEEEeCC--eeeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc--
Confidence 47999999999964 4699999999999999999999999999999999999987 49999999998742111
Q ss_pred CCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC---ccCCCCCCCCChHHHH
Q 035832 91 PEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG---TSLDKDPHSLSGGYKR 167 (245)
Q Consensus 91 ~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkq 167 (245)
....++++++|+||++. +++..|+.||+.++.... ............+.++++.+++.. ..+++++.+|||||||
T Consensus 79 ~~~~~~~~i~~~~q~~~-~~~~~tv~enl~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q 156 (253)
T PRK14267 79 DPIEVRREVGMVFQYPN-PFPHLTIYDNVAIGVKLN-GLVKSKKELDERVEWALKKAALWDEVKDRLNDYPSNLSGGQRQ 156 (253)
T ss_pred ChHHHhhceeEEecCCc-cCCCCcHHHHHHHHHHhc-CccCCHHHHHHHHHHHHHHcCCccchhhhhccChhhCCHHHHH
Confidence 01123567999999984 666789999998752111 100011223345778889998842 1258899999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 168 RLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 168 rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|++|||||+.+|++|||||||+|||+.+++.+.++|+++.++.|||++|||++++..+||++++|++|+++..+
T Consensus 157 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~ 230 (253)
T PRK14267 157 RLVIARALAMKPKILLMDEPTANIDPVGTAKIEELLFELKKEYTIVLVTHSPAQAARVSDYVAFLYLGKLIEVG 230 (253)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhhCCEEEEEECCHHHHHhhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999876789999999999999999999999999998653
|
|
| >PRK14235 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-52 Score=364.08 Aligned_cols=222 Identities=27% Similarity=0.401 Sum_probs=183.2
Q ss_pred CCcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CcceEEEcCccCCCCC
Q 035832 13 CDYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP-----TSGSINIRGYNNDGEP 87 (245)
Q Consensus 13 ~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~~~~~ 87 (245)
..+++|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++...+
T Consensus 15 ~~~~~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~I~~~g~~i~~~~ 92 (267)
T PRK14235 15 ATEIKMRARDVSVFYGE--KQALFDVDLDIPEKTVTAFIGPSGCGKSTFLRCLNRMNDTIDGCRVTGKITLDGEDIYDPR 92 (267)
T ss_pred CCCceEEEEeEEEEECC--EEEEEEEEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEECcccc
Confidence 34568999999999964 4699999999999999999999999999999999999975 8999999998874321
Q ss_pred CCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCc---cCCCCCCCCChH
Q 035832 88 NNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGT---SLDKDPHSLSGG 164 (245)
Q Consensus 88 ~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---~~~~~~~~LSgG 164 (245)
. ....+++.++|+||++. .++ .|+.||+.++.... ............+.++++.+++.+. .+++++.+||||
T Consensus 93 ~--~~~~~~~~i~~v~q~~~-~~~-~tv~enl~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgG 167 (267)
T PRK14235 93 L--DVVELRARVGMVFQKPN-PFP-KSIYENVAYGPRIH-GLARSKAELDEIVETSLRKAGLWEEVKDRLHEPGTGLSGG 167 (267)
T ss_pred c--chHHHhhceEEEecCCC-CCC-CcHHHHHHHHHHhc-ccccchHHHHHHHHHHHHHcCCchhhhHHhhCCcccCCHH
Confidence 1 11123567999999985 444 59999998753111 1000112234457788999999531 257889999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 165 YKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 165 qkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||||++|||||+.+|++|||||||+|||+.+++.+.++|+++.++.|||++|||++++..+||++++|++|+++..+
T Consensus 168 q~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~l~~~~tiiivtH~~~~~~~~~d~v~~l~~G~i~~~g 244 (267)
T PRK14235 168 QQQRLCIARAIAVSPEVILMDEPCSALDPIATAKVEELIDELRQNYTIVIVTHSMQQAARVSQRTAFFHLGNLVEVG 244 (267)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHhcCCeEEEEEcCHHHHHhhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999876789999999999999999999999999998654
|
|
| >PRK11144 modC molybdate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-52 Score=376.89 Aligned_cols=209 Identities=31% Similarity=0.537 Sum_probs=179.1
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
||++ ||+++|++ + .+ |+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++............+
T Consensus 1 ~l~~-~l~k~~~~--~-~~-~vsl~i~~Ge~~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~~~~~~~~~~~~~~~ 75 (352)
T PRK11144 1 MLEL-NFKQQLGD--L-CL-TVNLTLPAQGITAIFGRSGAGKTSLINAISGLTRPQKGRIVLNGRVLFDAEKGICLPPEK 75 (352)
T ss_pred CeEE-EEEEEeCC--E-EE-EEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccchhh
Confidence 5888 99999964 2 23 899999999999999999999999999999999999999999998874321110111224
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
++++|+||++. +|+.+|+.+|+.++... ....++.++++.+|+.+. .++++.+|||||||||+|||||+
T Consensus 76 ~~i~~v~q~~~-l~~~~tv~enl~~~~~~---------~~~~~~~~~l~~~gl~~~-~~~~~~~LSgGq~qRvalaraL~ 144 (352)
T PRK11144 76 RRIGYVFQDAR-LFPHYKVRGNLRYGMAK---------SMVAQFDKIVALLGIEPL-LDRYPGSLSGGEKQRVAIGRALL 144 (352)
T ss_pred CCEEEEcCCcc-cCCCCcHHHHHHhhhhh---------hhHHHHHHHHHHcCCchh-hhCCcccCCHHHHHHHHHHHHHH
Confidence 67999999984 67789999999886311 123457788999999875 79999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
.+|++|||||||++||+.+++.+++.|+++.+ +.|+|++|||++++..+||++++|++|+++..+
T Consensus 145 ~~p~llLLDEPts~LD~~~~~~l~~~L~~l~~~~g~tii~vTHd~~~~~~~~d~i~~l~~G~i~~~g 211 (352)
T PRK11144 145 TAPELLLMDEPLASLDLPRKRELLPYLERLAREINIPILYVSHSLDEILRLADRVVVLEQGKVKAFG 211 (352)
T ss_pred cCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEeCCEEEEec
Confidence 99999999999999999999999999999864 589999999999999999999999999998654
|
|
| >PRK15112 antimicrobial peptide ABC system ATP-binding protein SapF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-52 Score=364.29 Aligned_cols=221 Identities=28% Similarity=0.365 Sum_probs=182.1
Q ss_pred cceEEEEeEEEECCCC-------ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCC
Q 035832 15 YSCLEVRDVSYRPPGT-------QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEP 87 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~-------~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~ 87 (245)
++||+++||+++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++....
T Consensus 2 ~~~l~~~~l~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~ 81 (267)
T PRK15112 2 ETLLEVRNLSKTFRYRTGWFRRQTVEAVKPLSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGELLIDDHPLHFGD 81 (267)
T ss_pred cceEEEeceEEEecCCCCcccccccceeeeeeEEecCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCc
Confidence 4579999999999521 246999999999999999999999999999999999999999999999998874211
Q ss_pred CCCCCCCCCCcEEEEecCCCC-CCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHH
Q 035832 88 NNSPEPLPPEKVGIVFQFPER-YFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYK 166 (245)
Q Consensus 88 ~~~~~~~~~~~i~~v~Q~~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqk 166 (245)
...+++.++|+||++.. +++..|+.+++.+........ ......+.+.++++.+++.....++++.+||||||
T Consensus 82 ----~~~~~~~i~~v~q~~~~~~~~~~tv~~~l~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~ 155 (267)
T PRK15112 82 ----YSYRSQRIRMIFQDPSTSLNPRQRISQILDFPLRLNTDL--EPEQREKQIIETLRQVGLLPDHASYYPHMLAPGQK 155 (267)
T ss_pred ----hhhHhccEEEEecCchhhcCcchhHHHHHHHHHHhccCC--CHHHHHHHHHHHHHHcCCChHHHhcCchhcCHHHH
Confidence 11234579999999742 345678999987642111110 11223346788999999953235888999999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 167 RRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 167 qrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|||+|||||+.+|++|||||||++||+.+++.+.++|.++.+ +.|||++||+++++..+||++++|++|+++..+
T Consensus 156 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~g~tviivsH~~~~~~~~~d~i~~l~~G~i~~~~ 232 (267)
T PRK15112 156 QRLGLARALILRPKVIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHLGMMKHISDQVLVMHQGEVVERG 232 (267)
T ss_pred HHHHHHHHHHhCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999853 689999999999999999999999999998654
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6e-53 Score=388.20 Aligned_cols=224 Identities=35% Similarity=0.435 Sum_probs=190.9
Q ss_pred CcceEEEEeEEEECCC---------CccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCC
Q 035832 14 DYSCLEVRDVSYRPPG---------TQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNND 84 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~---------~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~ 84 (245)
..++++++||++.|.. +...+++||||++.+||++||+|+||||||||.|+|+|+++|++|+|.++|.+.
T Consensus 277 ~~~ll~V~~l~k~y~~~~~~~~~~~~~~~Av~~VSf~l~~GE~lglVGeSGsGKSTlar~i~gL~~P~~G~i~~~g~~~- 355 (539)
T COG1123 277 AEPLLSVRNLSKRYGSRKGLFVRERGEVKAVDDVSFDLREGETLGLVGESGSGKSTLARILAGLLPPSSGSIIFDGQDL- 355 (539)
T ss_pred cCceeEeeeeeeeeccccccccccccceeeeeeeeeEecCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEEeCccc-
Confidence 5778999999999973 124689999999999999999999999999999999999999999999999872
Q ss_pred CCCCCCCCCCCCCcEEEEecCCCCCC-CcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCCh
Q 035832 85 GEPNNSPEPLPPEKVGIVFQFPERYF-VADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSG 163 (245)
Q Consensus 85 ~~~~~~~~~~~~~~i~~v~Q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg 163 (245)
..... .....++++-++||+|...+ +.+||.+.+...+...... . ..+.++++.++++.++|....++++|++|||
T Consensus 356 ~~~~~-~~~~~r~~~QmvFQdp~~SLnPr~tV~~~i~epL~~~~~~-~-~~~~~~rv~~ll~~VgL~~~~l~ryP~elSG 432 (539)
T COG1123 356 DLTGG-ELRRLRRRIQMVFQDPYSSLNPRMTVGDILAEPLRIHGGG-S-GAERRARVAELLELVGLPPEFLDRYPHELSG 432 (539)
T ss_pred ccccc-hhhhhhhheEEEEeCcccccCccccHHHHHHhHHhhhccc-c-hHHHHHHHHHHHHHcCCCHHHHhcCchhcCc
Confidence 22211 12224578999999996533 5689999998753221111 1 2334557899999999987558999999999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 164 GYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 164 Gqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|||||++|||||+.+|++|++|||||+||+..+.++.++|+++++ +.|.||||||+..+..+||||++|++|+|+..+
T Consensus 433 GQrQRvaIARALa~~P~lli~DEp~SaLDvsvqa~VlnLl~~lq~e~g~t~lfISHDl~vV~~i~drv~vm~~G~iVE~G 512 (539)
T COG1123 433 GQRQRVAIARALALEPKLLILDEPVSALDVSVQAQVLNLLKDLQEELGLTYLFISHDLAVVRYIADRVAVMYDGRIVEEG 512 (539)
T ss_pred chhHHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHHhCCEEEEEeCCHHHHHhhCceEEEEECCeEEEeC
Confidence 999999999999999999999999999999999999999999975 589999999999999999999999999999876
|
|
| >TIGR01277 thiQ thiamine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-52 Score=350.95 Aligned_cols=209 Identities=30% Similarity=0.436 Sum_probs=179.1
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
++++|+++.|+. .++|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++.... ..++
T Consensus 1 ~~~~~l~~~~~~----~~~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~------~~~~ 70 (213)
T TIGR01277 1 LALDKVRYEYEH----LPMEFDLNVADGEIVAIMGPSGAGKSTLLNLIAGFIEPASGSIKVNDQSHTGLA------PYQR 70 (213)
T ss_pred CeEEeeeEEeCC----cceeeEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccCC------hhcc
Confidence 478999999952 468999999999999999999999999999999999999999999998874311 1346
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ 177 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~ 177 (245)
.++|+||++. +++.+|+.||+.++...... .......++.++++.+++.+. .++.+.+||||||||++|||||+.
T Consensus 71 ~i~~v~q~~~-~~~~~t~~en~~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrl~laral~~ 145 (213)
T TIGR01277 71 PVSMLFQENN-LFAHLTVRQNIGLGLHPGLK---LNAEQQEKVVDAAQQVGIADY-LDRLPEQLSGGQRQRVALARCLVR 145 (213)
T ss_pred ceEEEeccCc-cCCCCcHHHHHHhHhhccCC---ccHHHHHHHHHHHHHcCcHHH-hhCCcccCCHHHHHHHHHHHHHhc
Confidence 7999999985 66678999999865221111 011223457788999999865 699999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+|+++||||||++||+.+++.+.++|.++.+ +.|||++||+++++..+||++++|++|+++..+
T Consensus 146 ~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~tii~vsh~~~~~~~~~d~v~~l~~g~i~~~~ 211 (213)
T TIGR01277 146 PNPILLLDEPFSALDPLLREEMLALVKQLCSERQRTLLMVTHHLSDARAIASQIAVVSQGKIKVVS 211 (213)
T ss_pred CCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCeEEEEECCeEEEec
Confidence 9999999999999999999999999999863 589999999999999999999999999998765
|
This model describes the energy-transducing ATPase subunit ThiQ of the ThiBPQ thiamine (and thiamine pyrophosphate) ABC transporter in several Proteobacteria. This protein is found so far only in Proteobacteria, and is found in complete genomes only if the ThiB and ThiP subunits are also found. |
| >TIGR03005 ectoine_ehuA ectoine/hydroxyectoine ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.1e-53 Score=361.98 Aligned_cols=218 Identities=28% Similarity=0.398 Sum_probs=182.1
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCC-------C--
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEP-------N-- 88 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~-------~-- 88 (245)
|+++||++.|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+ .
T Consensus 1 i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~~~~~~~~~~~ 78 (252)
T TIGR03005 1 VRFSDVTKRFGI--LTVLDGLNFSVAAGEKVALIGPSGSGKSTILRILMTLEPIDEGQIQVEGEQLYHMPGRNGPLVPAD 78 (252)
T ss_pred CEEEEEEEEeCC--eeEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccccccccccccc
Confidence 478999999964 46999999999999999999999999999999999999999999999998874321 0
Q ss_pred CCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHH
Q 035832 89 NSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRR 168 (245)
Q Consensus 89 ~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqr 168 (245)
......+++.++|+||++. +++..|+.+|+.++....... ........+.++++.+|+.+. .++.+.+|||||+||
T Consensus 79 ~~~~~~~~~~i~~v~q~~~-~~~~~tv~~nl~~~~~~~~~~--~~~~~~~~~~~~l~~~gl~~~-~~~~~~~LS~G~~qr 154 (252)
T TIGR03005 79 EKHLRQMRNKIGMVFQSFN-LFPHKTVLDNVTEAPVLVLGM--ARAEAEKRAMELLDMVGLADK-ADHMPAQLSGGQQQR 154 (252)
T ss_pred hhHHHHHhhCeEEEecCcc-cCCCCcHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHcCChhH-hhcChhhcCHHHHHH
Confidence 0000112467999999984 666789999998742110011 112233467889999999875 689999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 169 LALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 169 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
++|||||+.+|++|||||||+|||+.++..++++|+++.+ +.|+|++|||++++..+||++++|++|+++..+
T Consensus 155 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~g 229 (252)
T TIGR03005 155 VAIARALAMRPKVMLFDEVTSALDPELVGEVLNVIRRLASEHDLTMLLVTHEMGFAREFADRVCFFDKGRIVEQG 229 (252)
T ss_pred HHHHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhcCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999999999853 689999999999999999999999999998654
|
Members of this family are the ATP-binding protein of a conserved four gene ABC transporter operon found next to ectoine unilization operons and ectoine biosynthesis operons. Ectoine is a compatible solute that protects enzymes from high osmolarity. It is released by some species in response to hypoosmotic shock, and it is taken up by a number of bacteria as a compatible solute or for consumption. This family shows strong sequence similiarity to a number of amino acid ABC transporter ATP-binding proteins. |
| >cd03252 ABCC_Hemolysin The ABC-transporter hemolysin B is a central component of the secretion machinery that translocates the toxin, hemolysin A, in a Sec-independent fashion across both membranes of E | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-52 Score=357.97 Aligned_cols=215 Identities=24% Similarity=0.377 Sum_probs=174.7
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|++++|+++.+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|.++...+. ..+++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~----~~~~~ 76 (237)
T cd03252 1 ITFEHVRFRYKPDGPVILDNISLRIKPGEVVGIVGRSGSGKSTLTKLIQRFYVPENGRVLVDGHDLALADP----AWLRR 76 (237)
T ss_pred CEEEEEEEecCCCCccceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCeehHhcCH----HHHhh
Confidence 47899999996433569999999999999999999999999999999999999999999999987643211 12346
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHH-HHHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEY-LALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
.++|+||++. ++ ..|+.||+.++... ......... ....+.++++.+ ++... +++++.+|||||||||+||||
T Consensus 77 ~i~~~~q~~~-~~-~~tv~~nl~~~~~~-~~~~~~~~~~~~~~~~~~l~~l~~~~~~~-~~~~~~~LSgG~~qrv~lara 152 (237)
T cd03252 77 QVGVVLQENV-LF-NRSIRDNIALADPG-MSMERVIEAAKLAGAHDFISELPEGYDTI-VGEQGAGLSGGQRQRIAIARA 152 (237)
T ss_pred cEEEEcCCch-hc-cchHHHHhhccCCC-CCHHHHHHHHHHcCcHHHHHhCcccccch-hhcCCCcCCHHHHHHHHHHHH
Confidence 7999999974 33 57999999875321 111000111 111234556666 56654 588999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|+.+|++|||||||++||+.+++.+.+.|+++.++.|||++|||++++. .||++++|++|+++..+
T Consensus 153 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~-~~d~v~~l~~G~i~~~~ 218 (237)
T cd03252 153 LIHNPRILIFDEATSALDYESEHAIMRNMHDICAGRTVIIIAHRLSTVK-NADRIIVMEKGRIVEQG 218 (237)
T ss_pred HhhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEEc
Confidence 9999999999999999999999999999999876789999999999985 69999999999998754
|
coli. The hemolysin A (HlyA) transport machinery is composed of the ATP-binding cassette (ABC) transporter HlyB located in the inner membrane, hemolysin D (HlyD), also anchored in the inner membrane, and TolC, which resides in the outer membrane. HlyD apparently forms a continuous channel that bridges the entire periplasm, interacting with TolC and HlyB. This arrangement prevents the appearance of periplasmic intermediates of HlyA during substrate transport. Little is known about the molecular details of HlyA transport, but it is evident that ATP-hydrolysis by the ABC-transporter HlyB is a necessary source of energy. |
| >PRK10771 thiQ thiamine transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-52 Score=354.19 Aligned_cols=210 Identities=29% Similarity=0.444 Sum_probs=179.4
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
||+++||+++|++ . ..|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..... .+
T Consensus 1 ~l~~~~l~~~~~~--~--~~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~------~~ 70 (232)
T PRK10771 1 MLKLTDITWLYHH--L--PMRFDLTVERGERVAILGPSGAGKSTLLNLIAGFLTPASGSLTLNGQDHTTTPP------SR 70 (232)
T ss_pred CeEEEEEEEEECC--c--cceeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCeecCcCCh------hh
Confidence 5899999999963 2 249999999999999999999999999999999999999999999987643211 13
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
+.++|+||++. +++..|+.||+.+++..... ..+....++.++++.+|+++. .++++.+||||||||++||||++
T Consensus 71 ~~i~~~~q~~~-~~~~~tv~e~l~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrv~laral~ 145 (232)
T PRK10771 71 RPVSMLFQENN-LFSHLTVAQNIGLGLNPGLK---LNAAQREKLHAIARQMGIEDL-LARLPGQLSGGQRQRVALARCLV 145 (232)
T ss_pred ccEEEEecccc-cccCCcHHHHHhcccccccC---CCHHHHHHHHHHHHHcCcHHH-HhCCcccCCHHHHHHHHHHHHHh
Confidence 57999999984 66678999999875321111 011234567889999999875 79999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
.+|+++||||||+|||+.+++.+.++|+++.+ +.|||++|||++++..+||++++|++|+++..+
T Consensus 146 ~~p~lllLDEP~~gLD~~~~~~~~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~g 212 (232)
T PRK10771 146 REQPILLLDEPFSALDPALRQEMLTLVSQVCQERQLTLLMVSHSLEDAARIAPRSLVVADGRIAWDG 212 (232)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999853 689999999999999999999999999998654
|
|
| >TIGR03410 urea_trans_UrtE urea ABC transporter, ATP-binding protein UrtE | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-53 Score=357.56 Aligned_cols=211 Identities=29% Similarity=0.405 Sum_probs=177.3
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++||++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...... ...++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~---~~~~~ 75 (230)
T TIGR03410 1 LEVSNLNVYYGQ--SHILRGVSLEVPKGEVTCVLGRNGVGKTTLLKTLMGLLPVKSGSIRLDGEDITKLPPH---ERARA 75 (230)
T ss_pred CEEEeEEEEeCC--eEEecceeeEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCHH---HHHHh
Confidence 578999999974 4699999999999999999999999999999999999999999999999887532211 11235
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcC-CCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVG-LDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
.++|+||++. +++..|+.+|+.++.... .. . ......++++.++ +... .++++.+||||||||++|||||+
T Consensus 76 ~i~~~~q~~~-~~~~~tv~~~l~~~~~~~-~~---~--~~~~~~~~l~~~~~l~~~-~~~~~~~LS~G~~qrv~la~al~ 147 (230)
T TIGR03410 76 GIAYVPQGRE-IFPRLTVEENLLTGLAAL-PR---R--SRKIPDEIYELFPVLKEM-LGRRGGDLSGGQQQQLAIARALV 147 (230)
T ss_pred CeEEeccCCc-ccCCCcHHHHHHHHHHhc-Cc---c--hHHHHHHHHHHHHhHHHH-hhCChhhCCHHHHHHHHHHHHHh
Confidence 7999999985 666789999998753211 11 0 1123456677776 5554 68999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
.+|+++||||||+|||+.+++.+.++|.++.+ +.|||++||+++++..+||++++|++|+++..+
T Consensus 148 ~~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~g~i~~~~ 214 (230)
T TIGR03410 148 TRPKLLLLDEPTEGIQPSIIKDIGRVIRRLRAEGGMAILLVEQYLDFARELADRYYVMERGRVVASG 214 (230)
T ss_pred cCCCEEEecCCcccCCHHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999864 589999999999999999999999999998754
|
Members of this protein family are ABC transporter ATP-binding subunits associated with urea transport and metabolism. This protein is found in a conserved five-gene transport operon typically found adjacent to urease genes. It was shown in Cyanobacteria that disruption leads to the loss of high-affinity urea transport activity. |
| >cd03297 ABC_ModC_molybdenum_transporter ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-52 Score=351.71 Aligned_cols=210 Identities=36% Similarity=0.557 Sum_probs=175.9
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
+++ ||+|+|++ +.+ |+||+|++ |+++|+||||||||||+++|+|+++|++|+|.++|.++............++
T Consensus 2 ~~~-~l~~~~~~--~~~--~vsl~i~~-e~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~ 75 (214)
T cd03297 2 LCV-DIEKRLPD--FTL--KIDFDLNE-EVTGIFGASGAGKSTLLRCIAGLEKPDGGTIVLNGTVLFDSRKKINLPPQQR 75 (214)
T ss_pred cee-eeeEecCC--eee--CceEEEcc-eeEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEecccccchhhhhhHhh
Confidence 556 99999975 334 99999999 9999999999999999999999999999999999987642111000112346
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ 177 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~ 177 (245)
.++|+||++. +++..|+.+|+.++.... . ......++.++++.+++.+. .++++.+||||||||++|||||+.
T Consensus 76 ~i~~~~q~~~-~~~~~t~~~~l~~~~~~~--~---~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrv~la~al~~ 148 (214)
T cd03297 76 KIGLVFQQYA-LFPHLNVRENLAFGLKRK--R---NREDRISVDELLDLLGLDHL-LNRYPAQLSGGEKQRVALARALAA 148 (214)
T ss_pred cEEEEecCCc-cCCCCCHHHHHHHHHhhC--C---HHHHHHHHHHHHHHcCCHhH-hhcCcccCCHHHHHHHHHHHHHhc
Confidence 7999999984 566789999998752111 1 12233457889999999865 689999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEe
Q 035832 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~ 240 (245)
+|+++||||||+|||+.+++.+.++|+++.+ +.|||++|||++++..+||++++|++|+++..
T Consensus 149 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 213 (214)
T cd03297 149 QPELLLLDEPFSALDRALRLQLLPELKQIKKNLNIPVIFVTHDLSEAEYLADRIVVMEDGRLQYI 213 (214)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEecCHHHHHHhcCEEEEEECCEEEec
Confidence 9999999999999999999999999999853 58999999999999999999999999998764
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10744 pstB phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-52 Score=359.80 Aligned_cols=220 Identities=26% Similarity=0.385 Sum_probs=182.1
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCcceEEEcCccCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK-----PTSGSINIRGYNNDGEPN 88 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~~ 88 (245)
...+|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++....
T Consensus 10 ~~~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~p~~G~i~~~g~~~~~~~- 86 (260)
T PRK10744 10 APSKIQVRNLNFYYGK--FHALKNINLDIAKNQVTAFIGPSGCGKSTLLRTFNRMYELYPEQRAEGEILLDGENILTPK- 86 (260)
T ss_pred CCceEEEEEEEEEeCC--eEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcceEEEECCEEccccc-
Confidence 4557999999999964 469999999999999999999999999999999999986 58999999998874211
Q ss_pred CCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC---ccCCCCCCCCChHH
Q 035832 89 NSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG---TSLDKDPHSLSGGY 165 (245)
Q Consensus 89 ~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGq 165 (245)
......+++++|+||++. ++. .|+++|+.++....... ......+++.++++.+++.. ...++++.+|||||
T Consensus 87 -~~~~~~~~~i~~~~q~~~-~~~-~tv~~nl~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq 161 (260)
T PRK10744 87 -QDIALLRAKVGMVFQKPT-PFP-MSIYDNIAFGVRLFEKL--SRAEMDERVEWALTKAALWNEVKDKLHQSGYSLSGGQ 161 (260)
T ss_pred -cchHHHhcceEEEecCCc-cCc-CcHHHHHhhhHhhcCCC--CHHHHHHHHHHHHHHcCCChhhHHHHhcCCCCCCHHH
Confidence 111123567999999984 444 89999998752211011 11223345778899999742 12588999999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 166 KRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 166 kqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|||++|||||+.+|++|||||||+|||+.+++.+.+.|++++++.|||++||+++++..+||++++|++|+++..+
T Consensus 162 ~qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 237 (260)
T PRK10744 162 QQRLCIARGIAIRPEVLLLDEPCSALDPISTGRIEELITELKQDYTVVIVTHNMQQAARCSDYTAFMYLGELIEFG 237 (260)
T ss_pred HHHHHHHHHHHCCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999999999999976789999999999999999999999999998754
|
|
| >PRK14269 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-52 Score=357.58 Aligned_cols=217 Identities=24% Similarity=0.392 Sum_probs=181.1
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCcceEEEcCccCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK---PTSGSINIRGYNNDGEPNNSPE 92 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~~ 92 (245)
++++++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.....
T Consensus 1 ~~~~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~G~i~~~g~~i~~~~~---- 74 (246)
T PRK14269 1 MIAKTTNLNLFYGK--KQALFDINMQIEQNKITALIGASGCGKSTFLRCFNRMNDKIAKIDGLVEIEGKDVKNQDV---- 74 (246)
T ss_pred CceeeeeeEEEECC--EeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCCceEEEECCEecccCCH----
Confidence 36899999999974 469999999999999999999999999999999999984 689999999998753221
Q ss_pred CCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC---ccCCCCCCCCChHHHHHH
Q 035832 93 PLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG---TSLDKDPHSLSGGYKRRL 169 (245)
Q Consensus 93 ~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv 169 (245)
...++.++|+||++. .|+ .|++||+.++.... ...........++.++++.+++.+ ...++++.+||||||||+
T Consensus 75 ~~~~~~i~~~~q~~~-l~~-~tv~eni~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qrv 151 (246)
T PRK14269 75 VALRKNVGMVFQQPN-VFV-KSIYENISYAPKLH-GMIKNKDEEEALVVDCLQKVGLFEEVKDKLKQNALALSGGQQQRL 151 (246)
T ss_pred HHHhhhEEEEecCCc-ccc-ccHHHHhhhHHhhc-CcccChHHHHHHHHHHHHHcCCChhhhHHhcCCcccCCHHHHHHH
Confidence 123567999999985 454 79999998752111 100011223345778899999952 125788999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 170 ALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 170 ~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+|||||+.+|+++||||||+|||+.++..+.+.|.++.++.|||++||+++++..+||++++|++|+++..+
T Consensus 152 ~laral~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g 223 (246)
T PRK14269 152 CIARALAIKPKLLLLDEPTSALDPISSGVIEELLKELSHNLSMIMVTHNMQQGKRVADYTAFFHLGELIEFG 223 (246)
T ss_pred HHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhCcEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999876789999999999999999999999999998754
|
|
| >TIGR02142 modC_ABC molybdenum ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-52 Score=374.03 Aligned_cols=209 Identities=33% Similarity=0.520 Sum_probs=177.5
Q ss_pred eEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEE
Q 035832 22 DVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGI 101 (245)
Q Consensus 22 ~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~ 101 (245)
||+++|++ +. + ++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++............+++++|
T Consensus 4 ~l~~~~~~--~~-~-~isl~i~~Gei~~l~G~nGsGKSTLl~~iaGl~~p~~G~I~~~g~~i~~~~~~~~~~~~~~~i~~ 79 (354)
T TIGR02142 4 RFSKRLGD--FS-L-DADFTLPGQGVTAIFGRSGSGKTTLIRLIAGLTRPDEGEIVLNGRTLFDSRKGIFLPPEKRRIGY 79 (354)
T ss_pred EEEEEECC--EE-E-EEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECccCccccccchhhCCeEE
Confidence 89999964 33 5 99999999999999999999999999999999999999999999987532110011123567999
Q ss_pred EecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCE
Q 035832 102 VFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDL 181 (245)
Q Consensus 102 v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~l 181 (245)
+||++. +|+.+|+.||+.++.... . ......++.++++.++|.+. .++++.+|||||||||+|||||+.+|++
T Consensus 80 v~q~~~-l~~~~tv~enl~~~~~~~--~---~~~~~~~~~~~l~~~gL~~~-~~~~~~~LSgGqkqRvalAraL~~~p~l 152 (354)
T TIGR02142 80 VFQEAR-LFPHLSVRGNLRYGMKRA--R---PSERRISFERVIELLGIGHL-LGRLPGRLSGGEKQRVAIGRALLSSPRL 152 (354)
T ss_pred EecCCc-cCCCCcHHHHHHHHhhcc--C---hhHHHHHHHHHHHHcCChhH-hcCChhhCCHHHHHHHHHHHHHHcCCCE
Confidence 999984 677889999999863211 1 11223457889999999875 7999999999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 182 LILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 182 lllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|||||||+|||+.+++.++++|+++.+ +.|||++|||++++..+||++++|++|+++..+
T Consensus 153 llLDEPts~LD~~~~~~l~~~L~~l~~~~g~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g 214 (354)
T TIGR02142 153 LLMDEPLAALDDPRKYEILPYLERLHAEFGIPILYVSHSLQEVLRLADRVVVLEDGRVAAAG 214 (354)
T ss_pred EEEcCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCEEEEEC
Confidence 999999999999999999999999864 589999999999999999999999999998654
|
This model represents the ATP-binding cassette (ABC) protein of the three subunit molybdate ABC transporter. The three proteins of this complex are homologous to proteins of the sulfate ABC transporter. Molybdenum may be used in nitrogenases of nitrogen-fixing bacteria and in molybdopterin cofactors. In some cases, molybdate may be transported by a sulfate transporter rather than by a specific molybdate transporter. |
| >PRK09984 phosphonate/organophosphate ester transporter subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-52 Score=360.69 Aligned_cols=222 Identities=22% Similarity=0.302 Sum_probs=183.5
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---cceEEEcCccCCCCCCC-CC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPT---SGSINIRGYNNDGEPNN-SP 91 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~-~~ 91 (245)
++|+++||+++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|+ +|+|+++|.++...... ..
T Consensus 3 ~~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~p~~~~~G~i~~~g~~~~~~~~~~~~ 80 (262)
T PRK09984 3 TIIRVEKLAKTFNQ--HQALHAVDLNIHHGEMVALLGPSGSGKSTLLRHLSGLITGDKSAGSHIELLGRTVQREGRLARD 80 (262)
T ss_pred cEEEEeeEEEEeCC--eEEEecceEEEcCCcEEEEECCCCCCHHHHHHHHhccCCCCCCCceEEEECCEecccccccchh
Confidence 47999999999964 46999999999999999999999999999999999999986 49999999877432100 00
Q ss_pred CCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCc-----hhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHH
Q 035832 92 EPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGS-----IQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYK 166 (245)
Q Consensus 92 ~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~-----~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqk 166 (245)
....+++++|+||++. +++.+|+.+|+.++....... ..........+.++++.+|+.+. .++.+.+||||||
T Consensus 81 ~~~~~~~i~~~~q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~ 158 (262)
T PRK09984 81 IRKSRANTGYIFQQFN-LVNRLSVLENVLIGALGSTPFWRTCFSWFTREQKQRALQALTRVGMVHF-AHQRVSTLSGGQQ 158 (262)
T ss_pred HHHHHhheEEEccccc-cccCCcHHHHHHhhhcccccchhhhcccccHHHHHHHHHHHHHcCCHHH-HhCCccccCHHHH
Confidence 0112457999999985 566789999998753110000 00012234467889999999864 6999999999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 167 RRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 167 qrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|||+|||||+.+|++|||||||+|||+.+++.+.++|+++.+ +.|||++|||++++..+||++++|++|+++..+
T Consensus 159 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~g~tvii~tH~~~~~~~~~d~i~~l~~g~i~~~g 235 (262)
T PRK09984 159 QRVAIARALMQQAKVILADEPIASLDPESARIVMDTLRDINQNDGITVVVTLHQVDYALRYCERIVALRQGHVFYDG 235 (262)
T ss_pred HHHHHHHHHhcCCCEEEecCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999863 589999999999999999999999999997654
|
|
| >PRK13642 cbiO cobalt transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-52 Score=363.06 Aligned_cols=216 Identities=34% Similarity=0.515 Sum_probs=182.8
Q ss_pred eEEEEeEEEECCCC-ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGT-QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 17 ~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
+|+++|++++|++. ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..... ...
T Consensus 4 ~l~~~~l~~~~~~~~~~~~l~~v~l~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~i~~~~~----~~~ 79 (277)
T PRK13642 4 ILEVENLVFKYEKESDVNQLNGVSFSITKGEWVSIIGQNGSGKSTTARLIDGLFEEFEGKVKIDGELLTAENV----WNL 79 (277)
T ss_pred eEEEEEEEEEcCCCCcCeeeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEECCcCCH----HHH
Confidence 79999999999742 2358999999999999999999999999999999999999999999999988753211 123
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
++++||+||++...++..|+.+|+.++.... .. ......+++.++++.+++.+. .++++.+||||||||++|||||
T Consensus 80 ~~~i~~v~q~~~~~~~~~tv~eni~~~~~~~-~~--~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrv~lAraL 155 (277)
T PRK13642 80 RRKIGMVFQNPDNQFVGATVEDDVAFGMENQ-GI--PREEMIKRVDEALLAVNMLDF-KTREPARLSGGQKQRVAVAGII 155 (277)
T ss_pred hcceEEEEECHHHhhccCCHHHHHHhhHHHc-CC--CHHHHHHHHHHHHHHCCCHhH-hhCCcccCCHHHHHHHHHHHHH
Confidence 5679999999743456789999998752111 11 122233467888999999875 7999999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+.+|++|||||||+|||+.+++.++++|.++.+ +.|||++||+++++. .||++++|++|+++..+
T Consensus 156 ~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tiil~sH~~~~~~-~~d~i~~l~~G~i~~~g 222 (277)
T PRK13642 156 ALRPEIIILDESTSMLDPTGRQEIMRVIHEIKEKYQLTVLSITHDLDEAA-SSDRILVMKAGEIIKEA 222 (277)
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999864 689999999999986 69999999999998654
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-52 Score=391.73 Aligned_cols=221 Identities=24% Similarity=0.316 Sum_probs=185.9
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CcceEEEcCccCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP--TSGSINIRGYNNDGEPNNSPE 92 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~ 92 (245)
.+||+++|++++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|.++...+. .
T Consensus 3 ~~~l~~~nl~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~---~ 77 (506)
T PRK13549 3 EYLLEMKNITKTFGG--VKALDNVSLKVRAGEIVSLCGENGAGKSTLMKVLSGVYPHGTYEGEIIFEGEELQASNI---R 77 (506)
T ss_pred CceEEEeeeEEEeCC--eEeecceeEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCH---H
Confidence 468999999999964 4699999999999999999999999999999999999996 89999999988743211 0
Q ss_pred CCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHH
Q 035832 93 PLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALA 172 (245)
Q Consensus 93 ~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iA 172 (245)
..+++.+||+||++. +++.+|++||+.++................++.++++.+++.+. .++++.+|||||||||+||
T Consensus 78 ~~~~~~i~~v~q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgGqkqrv~la 155 (506)
T PRK13549 78 DTERAGIAIIHQELA-LVKELSVLENIFLGNEITPGGIMDYDAMYLRAQKLLAQLKLDIN-PATPVGNLGLGQQQLVEIA 155 (506)
T ss_pred HHHHCCeEEEEeccc-cCCCCcHHHHhhhcccccccCCcCHHHHHHHHHHHHHHcCCCCC-cccchhhCCHHHHHHHHHH
Confidence 112456999999984 66778999999886321100000112234467889999999865 6999999999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 173 IQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 173 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
|||+.+|++|||||||++||+.++..++++|.++.+ +.|||++|||++++..+||++++|++|+++.++.
T Consensus 156 ~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvi~~tH~~~~~~~~~d~v~~l~~G~i~~~~~ 226 (506)
T PRK13549 156 KALNKQARLLILDEPTASLTESETAVLLDIIRDLKAHGIACIYISHKLNEVKAISDTICVIRDGRHIGTRP 226 (506)
T ss_pred HHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhcCEEEEEECCEEeeecc
Confidence 999999999999999999999999999999999864 6899999999999999999999999999987643
|
|
| >TIGR03873 F420-0_ABC_ATP proposed F420-0 ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-52 Score=359.11 Aligned_cols=216 Identities=31% Similarity=0.445 Sum_probs=182.1
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+++
T Consensus 2 l~~~~l~~~~~~--~~il~~is~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~----~~~~~ 75 (256)
T TIGR03873 2 LRLSRVSWSAGG--RLIVDGVDVTAPPGSLTGLLGPNGSGKSTLLRLLAGALRPDAGTVDLAGVDLHGLSR----RARAR 75 (256)
T ss_pred ceEEeEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCCEEEECCEEcccCCH----HHHhh
Confidence 689999999964 469999999999999999999999999999999999999999999999987743211 11245
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCc-hhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGS-IQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
.++|+||++. .++..|+.+|+.++....... .........++.++++.+++.+. .++++.+||||||||++|||||+
T Consensus 76 ~i~~~~q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrl~la~al~ 153 (256)
T TIGR03873 76 RVALVEQDSD-TAVPLTVRDVVALGRIPHRSLWAGDSPHDAAVVDRALARTELSHL-ADRDMSTLSGGERQRVHVARALA 153 (256)
T ss_pred heEEecccCc-cCCCCCHHHHHHhcchhhhhhccCCCHHHHHHHHHHHHHcCcHhh-hcCCcccCCHHHHHHHHHHHHHh
Confidence 7999999984 556789999998752111000 00011223457889999999864 69999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
.+|+++||||||+|||+.+++.+.++|+++++ +.|||++|||++++..+||++++|++|+++..+
T Consensus 154 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~g 219 (256)
T TIGR03873 154 QEPKLLLLDEPTNHLDVRAQLETLALVRELAATGVTVVAALHDLNLAASYCDHVVVLDGGRVVAAG 219 (256)
T ss_pred cCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEeCCCEEEec
Confidence 99999999999999999999999999999864 589999999999999999999999999998754
|
This small clade of ABC-type transporter ATP-binding protein components is found as a three gene cassette along with a periplasmic substrate-binding protein (TIGR03868) and a permease (TIGR03869). The organisms containing this cassette are all Actinobacteria and all contain numerous genes requiring the coenzyme F420. This model was defined based on five such organisms, four of which are lacking all F420 biosynthetic capability save the final side-chain polyglutamate attachment step (via the gene cofE: TIGR01916). In Jonesia denitrificans DSM 20603 and marine actinobacterium PHSC20C1 this cassette is in an apparent operon with the cofE gene and, in PHSC20C1, also with a F420-dependent glucose-6-phosphate dehydrogenase (TIGR03554). Based on these observations we propose that this ATP-binding protein is a component of an F420-0 (that is, F420 lacking only the polyglutamate tail) transporter. |
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-52 Score=390.15 Aligned_cols=219 Identities=21% Similarity=0.300 Sum_probs=185.3
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
+||+++|++++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+. ...+
T Consensus 3 ~~i~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~~~---~~~~ 77 (501)
T PRK10762 3 ALLQLKGIDKAFPG--VKALSGAALNVYPGRVMALVGENGAGKSTMMKVLTGIYTRDAGSILYLGKEVTFNGP---KSSQ 77 (501)
T ss_pred ceEEEeeeEEEeCC--eEEeeeeeEEEcCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH---HHHH
Confidence 57999999999964 469999999999999999999999999999999999999999999999988743211 0112
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCC-chhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSG-SIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
+++++|+||++. +++.+|++||+.++...... ..........++.++++.+|+.+. .++++.+|||||||||+||||
T Consensus 78 ~~~i~~v~q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgG~~qrv~la~a 155 (501)
T PRK10762 78 EAGIGIIHQELN-LIPQLTIAENIFLGREFVNRFGRIDWKKMYAEADKLLARLNLRFS-SDKLVGELSIGEQQMVEIAKV 155 (501)
T ss_pred hCCEEEEEcchh-ccCCCcHHHHhhhccccccccCccCHHHHHHHHHHHHHHcCCCCC-ccCchhhCCHHHHHHHHHHHH
Confidence 457999999984 67788999999886321100 000112234467889999999875 699999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|+.+|++|||||||++||+.+++.++++|+++++ +.|||++|||++++..+||++++|++|+++.++
T Consensus 156 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~~tvii~sHd~~~~~~~~d~i~~l~~G~i~~~~ 223 (501)
T PRK10762 156 LSFESKVIIMDEPTDALTDTETESLFRVIRELKSQGRGIVYISHRLKEIFEICDDVTVFRDGQFIAER 223 (501)
T ss_pred HhcCCCEEEEeCCcCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCCEEEEec
Confidence 9999999999999999999999999999999864 589999999999999999999999999998654
|
|
| >PRK14248 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-52 Score=359.31 Aligned_cols=220 Identities=25% Similarity=0.383 Sum_probs=180.6
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCcceEEEcCccCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK-----PTSGSINIRGYNNDGEPN 88 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~~ 88 (245)
+.++|+++|++++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++...+.
T Consensus 18 ~~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~ 95 (268)
T PRK14248 18 KEHILEVKDLSIYYGE--KRAVNDISMDIEKHAVTALIGPSGCGKSTFLRSINRMNDLIPSARSEGEILYEGLNILDSNI 95 (268)
T ss_pred CCceEEEEEEEEEeCC--ceeeeceEEEEcCCCEEEEECCCCCCHHHHHHHHHhcccccCCCCCceEEEECCEEcccccc
Confidence 3457999999999964 469999999999999999999999999999999999865 789999999998743211
Q ss_pred CCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC---ccCCCCCCCCChHH
Q 035832 89 NSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG---TSLDKDPHSLSGGY 165 (245)
Q Consensus 89 ~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGq 165 (245)
....+++.++|+||++. +++ .|+++|+.++.... .. .........+.++++.+++.. ..+++++.+|||||
T Consensus 96 --~~~~~~~~i~~v~q~~~-~~~-~tv~enl~~~~~~~-~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq 169 (268)
T PRK14248 96 --NVVNLRREIGMVFQKPN-PFP-KSIYNNITHALKYA-GE-RRKSVLDEIVEESLTKAALWDEVKDRLHSSALSLSGGQ 169 (268)
T ss_pred --cHHHHhccEEEEecCCc-cCc-ccHHHHHHHHHHhc-CC-CcHHHHHHHHHHHHHHcCCCcchHHHHhcCcccCCHHH
Confidence 11123567999999984 444 59999998752111 10 011122344667788888742 12578999999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 166 KRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 166 kqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|||++|||||+.+|++|||||||+|||+.+++.+.++|++++++.|||++|||++++..+||++++|++|+++..+
T Consensus 170 ~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~v~~l~~G~i~~~~ 245 (268)
T PRK14248 170 QQRLCIARTLAMKPAVLLLDEPASALDPISNAKIEELITELKEEYSIIIVTHNMQQALRVSDRTAFFLNGDLVEYD 245 (268)
T ss_pred HHHHHHHHHHhCCCCEEEEcCCCcccCHHHHHHHHHHHHHHhcCCEEEEEEeCHHHHHHhCCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999999999999976789999999999999999999999999998764
|
|
| >PRK14239 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-52 Score=355.75 Aligned_cols=220 Identities=26% Similarity=0.394 Sum_probs=180.4
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCC--CC---CcceEEEcCccCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLS--KP---TSGSINIRGYNNDGEPN 88 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~--~p---~~G~i~~~g~~~~~~~~ 88 (245)
..++|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+. +| ++|+|.++|+++.....
T Consensus 2 ~~~~l~~~~l~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~i~~~g~~~~~~~~ 79 (252)
T PRK14239 2 TEPILQVSDLSVYYNK--KKALNSVSLDFYPNEITALIGPSGSGKSTLLRSINRMNDLNPEVTITGSIVYNGHNIYSPRT 79 (252)
T ss_pred CCceEEEEeeEEEECC--eeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhcccccCCCCCccceEEECCEECcCccc
Confidence 3458999999999964 46999999999999999999999999999999999995 36 59999999988743111
Q ss_pred CCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC---ccCCCCCCCCChHH
Q 035832 89 NSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG---TSLDKDPHSLSGGY 165 (245)
Q Consensus 89 ~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGq 165 (245)
....+++.++|+||++. .+. .|+.||+.++.... .. .........+.++++.+++.. ...++++.+|||||
T Consensus 80 --~~~~~~~~i~~v~q~~~-~~~-~tv~enl~~~~~~~-~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~ 153 (252)
T PRK14239 80 --DTVDLRKEIGMVFQQPN-PFP-MSIYENVVYGLRLK-GI-KDKQVLDEAVEKSLKGASIWDEVKDRLHDSALGLSGGQ 153 (252)
T ss_pred --chHhhhhcEEEEecCCc-cCc-CcHHHHHHHHHHHc-CC-CcHHHHHHHHHHHHHHcCCchhHHHHHhcCcccCCHHH
Confidence 11123567999999984 444 89999998752111 11 111223345677888888742 12588999999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 166 KRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 166 kqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||||+|||||+.+|++|||||||+|||+.+++.++++|+++.++.|||++|||++++..+||++++|++|+++..+
T Consensus 154 ~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~~~~~d~i~~l~~G~i~~~g 229 (252)
T PRK14239 154 QQRVCIARVLATSPKIILLDEPTSALDPISAGKIEETLLGLKDDYTMLLVTRSMQQASRISDRTGFFLDGDLIEYN 229 (252)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHHHHhhCCeEEEEECCHHHHHHhCCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999999999999876689999999999999999999999999998754
|
|
| >TIGR01978 sufC FeS assembly ATPase SufC | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-52 Score=355.38 Aligned_cols=218 Identities=23% Similarity=0.308 Sum_probs=178.8
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCC--CCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLS--KPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~--~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|++ +|++|+|.++|+++...... ...
T Consensus 1 l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~~---~~~ 75 (243)
T TIGR01978 1 LKIKDLHVSVED--KEILKGVNLTVKKGEIHAIMGPNGSGKSTLSKTIAGHPSYEVTSGTILFKGQDLLELEPD---ERA 75 (243)
T ss_pred CeEeeEEEEECC--EEEEeccceEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCcceEEECCEecCCCCHH---Hhh
Confidence 578999999964 46999999999999999999999999999999999995 79999999999877432211 112
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCC--c--hhHHHHHHHHHHHHHHHcCCCCccCCCCCC-CCChHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSG--S--IQLKEYLALNLQRAINWVGLDGTSLDKDPH-SLSGGYKRRLA 170 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~--~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~LSgGqkqrv~ 170 (245)
+..++|+||++. .++..|+.+|+.+....... . ........+++.++++.+++.....++++. +||||||||++
T Consensus 76 ~~~i~~v~q~~~-~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrl~ 154 (243)
T TIGR01978 76 RAGLFLAFQYPE-EIPGVSNLEFLRSALNARRSARGEEPLDLLDFLKLLKAKLALLGMDEEFLNRSVNEGFSGGEKKRNE 154 (243)
T ss_pred ccceEeeecccc-ccCCcCHHHHHHHHHHHhhcccccccccHHHHHHHHHHHHHHcCCchhhcccccccCcCHHHHHHHH
Confidence 345999999985 56778999998764211000 0 001122334678899999997423577887 59999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhh-ccEEEEEeCCeEEEec
Q 035832 171 LAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAAL-VDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 171 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~-~d~v~~l~~G~i~~~~ 241 (245)
|||||+.+|++|||||||++||+.+++.++++|+++++ +.|||++|||++++..+ ||++++|++|+++..+
T Consensus 155 la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tvi~vsH~~~~~~~~~~d~i~~l~~G~i~~~g 227 (243)
T TIGR01978 155 ILQMALLEPKLAILDEIDSGLDIDALKIVAEGINRLREPDRSFLIITHYQRLLNYIKPDYVHVLLDGRIVKSG 227 (243)
T ss_pred HHHHHhcCCCEEEecCCcccCCHHHHHHHHHHHHHHHHCCcEEEEEEecHHHHHhhcCCeEEEEeCCEEEEec
Confidence 99999999999999999999999999999999999864 68999999999999988 8999999999998654
|
SufC is part of the SUF system, shown in E. coli to consist of six proteins and believed to act in Fe-S cluster formation during oxidative stress. SufC forms a complex with SufB and SufD. SufC belongs to the ATP-binding cassette transporter family (pfam00005) but is no longer thought to be part of a transporter. The complex is reported as cytosolic (PubMed:12554644) or associated with the membrane (PubMed:11943156). The SUF system also includes a cysteine desulfurase (SufS, enhanced by SufE) and a probable iron-sulfur cluster assembly scaffold protein, SufA. |
| >cd03251 ABCC_MsbA MsbA is an essential ABC transporter, closely related to eukaryotic MDR proteins | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-52 Score=354.11 Aligned_cols=215 Identities=29% Similarity=0.425 Sum_probs=175.7
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|++++|++...++++|+||++++||+++|+||||||||||+++|+|+++|++|+|+++|+++..... ...++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~----~~~~~ 76 (234)
T cd03251 1 VEFKNVTFRYPGDGPPVLRDISLDIPAGETVALVGPSGSGKSTLVNLIPRFYDVDSGRILIDGHDVRDYTL----ASLRR 76 (234)
T ss_pred CEEEEEEEEeCCCCccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhccccCCCCEEEECCEEhhhCCH----HHHHh
Confidence 47899999997532368999999999999999999999999999999999999999999999987643211 11246
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHH-HHHHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKE-YLALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
.++|+||++. ++ ..|++||+.++.... ....... .....+.++++.+ ++... .++++.+||||||||++||||
T Consensus 77 ~i~~~~q~~~-~~-~~tv~enl~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~l~~~-~~~~~~~LS~G~~qrv~la~a 152 (234)
T cd03251 77 QIGLVSQDVF-LF-NDTVAENIAYGRPGA-TREEVEEAARAANAHEFIMELPEGYDTV-IGERGVKLSGGQRQRIAIARA 152 (234)
T ss_pred hEEEeCCCCe-ec-cccHHHHhhccCCCC-CHHHHHHHHHHcCcHHHHHhcccCccee-eccCCCcCCHHHHHHHHHHHH
Confidence 7999999984 44 579999998863211 1101011 1111245666666 67664 688899999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|+.+|+++||||||+|||+.+++.+.+.|+++.++.|||++||+++++.. ||++++|++|+++..+
T Consensus 153 l~~~p~lllLDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~v~~l~~G~i~~~~ 218 (234)
T cd03251 153 LLKDPPILILDEATSALDTESERLVQAALERLMKNRTTFVIAHRLSTIEN-ADRIVVLEDGKIVERG 218 (234)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHhh-CCEEEEecCCeEeeeC
Confidence 99999999999999999999999999999998767899999999999875 9999999999997653
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14274 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-52 Score=357.01 Aligned_cols=221 Identities=27% Similarity=0.403 Sum_probs=182.1
Q ss_pred CCcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--C---CcceEEEcCccCCCCC
Q 035832 13 CDYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK--P---TSGSINIRGYNNDGEP 87 (245)
Q Consensus 13 ~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p---~~G~i~~~g~~~~~~~ 87 (245)
+..++|+++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|+++|+++...+
T Consensus 8 ~~~~~l~i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~p~~~~~G~i~~~g~~~~~~~ 85 (259)
T PRK14274 8 MKQEVYQINGMNLWYGQ--HHALKNINLSIPENEVTAIIGPSGCGKSTFIKTLNLMIQMVPNVKLTGEMNYNGSNILKGK 85 (259)
T ss_pred cCCceEEEeeEEEEECC--eeeEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceEEEECCEEccccc
Confidence 45668999999999964 469999999999999999999999999999999999997 3 5999999999874311
Q ss_pred CCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC---ccCCCCCCCCChH
Q 035832 88 NNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG---TSLDKDPHSLSGG 164 (245)
Q Consensus 88 ~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgG 164 (245)
. ....+++.+||+||++. .++ .|++||+.++... .... .......++.++++.+++.+ ..+++++.+||||
T Consensus 86 ~--~~~~~~~~i~~v~q~~~-~~~-~tv~enl~~~~~~-~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LS~G 159 (259)
T PRK14274 86 V--DLVELRKNIGMVFQKGN-PFP-QSIFDNVAYGPRI-HGTK-NKKKLQEIVEKSLKDVALWDEVKDRLHTQALSLSGG 159 (259)
T ss_pred c--CHHHHhhceEEEecCCc-ccc-cCHHHHHHhHHHh-cCCC-CHHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHH
Confidence 1 11123467999999985 444 5999999875211 1100 11223345677888888853 1258899999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 165 YKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 165 qkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||||++|||||+.+|+++||||||+|||+.++..++++|.++.++.|+|++||+++++..+||++++|++|+++..+
T Consensus 160 q~qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g 236 (259)
T PRK14274 160 QQQRLCIARALATNPDVLLMDEPTSALDPVSTRKIEELILKLKEKYTIVIVTHNMQQAARVSDQTAFFYMGELVECN 236 (259)
T ss_pred HHHHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999976789999999999999999999999999998754
|
|
| >PRK14245 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-52 Score=354.93 Aligned_cols=218 Identities=28% Similarity=0.467 Sum_probs=179.9
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCC---CCC--CcceEEEcCccCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGL---SKP--TSGSINIRGYNNDGEPNNS 90 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl---~~p--~~G~i~~~g~~~~~~~~~~ 90 (245)
++|+++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+ ++| ++|+|.++|+++.....
T Consensus 2 ~~l~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~-- 77 (250)
T PRK14245 2 VKIDARDVNFWYGD--FHALKGISMEIEEKSVVAFIGPSGCGKSTFLRLFNRMNDLIPATRLEGEIRIDGRNIYDKGV-- 77 (250)
T ss_pred cEEEEEEEEEEECC--EeEEeeeeEEEeCCCEEEEECCCCCCHHHHHHHHhhhhcccCCCCCceEEEECCEecccccc--
Confidence 57999999999964 4699999999999999999999999999999999997 455 58999999988753211
Q ss_pred CCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC---ccCCCCCCCCChHHHH
Q 035832 91 PEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG---TSLDKDPHSLSGGYKR 167 (245)
Q Consensus 91 ~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkq 167 (245)
.....++.++|+||++. ++. .|+.+|+.++.... .. .........+.++++.+++.+ ..+++++.+|||||||
T Consensus 78 ~~~~~~~~i~~v~q~~~-~~~-~tv~~nl~~~~~~~-~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~q 153 (250)
T PRK14245 78 QVDELRKNVGMVFQRPN-PFP-KSIFENVAYGLRVN-GV-KDNAFIRQRVEETLKGAALWDEVKDKLKESAFALSGGQQQ 153 (250)
T ss_pred cHHHHhhheEEEecCCc-cCc-ccHHHHHHHHHHHc-CC-CcHHHHHHHHHHHHHHcCCCcchhhhhhCCcccCCHHHHH
Confidence 01123567999999984 444 69999998752111 10 011223345778899999853 1257889999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 168 RLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 168 rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|++|||||+.+|++|||||||+|||+.+++.+.++|+++.++.|||++|||++++.++||++++|++|+++..+
T Consensus 154 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~v~~l~~G~~~~~~ 227 (250)
T PRK14245 154 RLCIARAMAVSPSVLLMDEPASALDPISTAKVEELIHELKKDYTIVIVTHNMQQAARVSDKTAFFYMGEMVEYD 227 (250)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999976789999999999999999999999999998754
|
|
| >PRK14256 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-51 Score=354.26 Aligned_cols=218 Identities=26% Similarity=0.417 Sum_probs=181.2
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--C---CcceEEEcCccCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK--P---TSGSINIRGYNNDGEPNNSP 91 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p---~~G~i~~~g~~~~~~~~~~~ 91 (245)
.|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|+++|+++......
T Consensus 4 ~l~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~~-- 79 (252)
T PRK14256 4 KVKLEQLNVHFGK--NHAVKDVSMDFPENSVTAIIGPSGCGKSTVLRSINRMHDLVPSARVTGKILLDDTDIYDRGVD-- 79 (252)
T ss_pred EEEEEEEEEEeCC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHHhcccCCCCCCCceEEEECCEEcccccCC--
Confidence 5899999999964 469999999999999999999999999999999999986 4 689999999987432111
Q ss_pred CCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC---ccCCCCCCCCChHHHHH
Q 035832 92 EPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG---TSLDKDPHSLSGGYKRR 168 (245)
Q Consensus 92 ~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqr 168 (245)
....++.++|+||++. +++..|+.||+.++.... ... ........+.++++.+++.. ..+++.+.+||||||||
T Consensus 80 ~~~~~~~i~~~~q~~~-~~~~~tv~enl~~~~~~~-~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 156 (252)
T PRK14256 80 PVSIRRRVGMVFQKPN-PFPAMSIYDNVIAGYKLN-GRV-NRSEADEIVESSLKRVALWDEVKDRLKSNAMELSGGQQQR 156 (252)
T ss_pred hHHhhccEEEEecCCC-CCCcCcHHHHHHhHHHhc-CCC-CHHHHHHHHHHHHHHcCCchhhhHHhhCCcCcCCHHHHHH
Confidence 1123567999999985 666789999998752211 100 11223345778899999853 12578899999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 169 LALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 169 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
++|||||+.+|++|||||||+|||+.+++.++++|+++.++.|||++||+++++..+||++++|++|+++..+
T Consensus 157 l~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~~ 229 (252)
T PRK14256 157 LCIARTIAVKPEVILMDEPASALDPISTLKIEELIEELKEKYTIIIVTHNMQQAARVSDYTAFFYMGDLVECG 229 (252)
T ss_pred HHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCcEEEEECCHHHHHhhCCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999999999976789999999999999999999999999998654
|
|
| >TIGR03740 galliderm_ABC gallidermin-class lantibiotic protection ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.2e-52 Score=350.32 Aligned_cols=206 Identities=29% Similarity=0.436 Sum_probs=178.3
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|++++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... ..+
T Consensus 1 l~l~~v~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~~~~~~--------~~~ 70 (223)
T TIGR03740 1 LETKNLSKRFGK--QTAVNNISLTVPKNSVYGLLGPNGAGKSTLLKMITGILRPTSGEIIFDGHPWTRK--------DLH 70 (223)
T ss_pred CEEEeEEEEECC--EEEEeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEecccc--------ccc
Confidence 578999999964 4699999999999999999999999999999999999999999999999875321 124
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ 177 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~ 177 (245)
.++|+||++. +++..|+++|+.++.... .. ....+.++++.+++++. .++++.+|||||+||++||||++.
T Consensus 71 ~~~~~~q~~~-~~~~~t~~~~~~~~~~~~-~~------~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~~rv~laral~~ 141 (223)
T TIGR03740 71 KIGSLIESPP-LYENLTARENLKVHTTLL-GL------PDSRIDEVLNIVDLTNT-GKKKAKQFSLGMKQRLGIAIALLN 141 (223)
T ss_pred cEEEEcCCCC-ccccCCHHHHHHHHHHHc-CC------CHHHHHHHHHHcCCcHH-HhhhHhhCCHHHHHHHHHHHHHhc
Confidence 7999999984 566789999998642110 10 12246778999999875 689999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
+|++|||||||+|||+.+++.++++|+++++ +.|||++|||++++..+||++++|++|+++..+.
T Consensus 142 ~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~i~~~~~ 207 (223)
T TIGR03740 142 HPKLLILDEPTNGLDPIGIQELRELIRSFPEQGITVILSSHILSEVQQLADHIGIISEGVLGYQGK 207 (223)
T ss_pred CCCEEEECCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHhcCEEEEEeCCEEEEecC
Confidence 9999999999999999999999999999864 6899999999999999999999999999987543
|
Model TIGR03731 represents the family of all lantibiotics related to gallidermin, including epidermin, mutatin, and nisin. This protein family describes the ATP-binding subunit of a gallidermin/epidermin class lantibiotic protection transporter. It is largely restricted to gallidermin-family lantibiotic biosynthesis and export cassettes, but also occurs in orphan transporter cassettes in species that lack candidate lantibiotic precursor and synthetase genes. |
| >PRK14241 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.5e-52 Score=356.56 Aligned_cols=218 Identities=26% Similarity=0.406 Sum_probs=180.6
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CcceEEEcCccCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP-----TSGSINIRGYNNDGEPNNSP 91 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~~~~~~~~~ 91 (245)
+|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++..... .
T Consensus 4 ~l~i~~v~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~laGl~~~~~~~~~~G~I~~~g~~~~~~~~--~ 79 (258)
T PRK14241 4 RIDVKDLNIYYGS--FHAVEDVNLNIEPRSVTAFIGPSGCGKSTVLRTLNRMHEVIPGARVEGEVLLDGEDLYGPGV--D 79 (258)
T ss_pred cEEEeeEEEEECC--EeeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcccCCCcceEEEECCEecccccc--C
Confidence 6999999999964 4699999999999999999999999999999999999974 79999999987742111 0
Q ss_pred CCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC---ccCCCCCCCCChHHHHH
Q 035832 92 EPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG---TSLDKDPHSLSGGYKRR 168 (245)
Q Consensus 92 ~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqr 168 (245)
...+++.++|+||++. +++..|+.+|+.++.... ... ......+.+.++++.+++.. ...++++.+||||||||
T Consensus 80 ~~~~~~~i~~~~q~~~-~~~~~tv~~nl~~~~~~~-~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~qr 156 (258)
T PRK14241 80 PVAVRRTIGMVFQRPN-PFPTMSIRDNVVAGLKLN-GVR-NKKDLDELVEKSLRGANLWNEVKDRLDKPGGGLSGGQQQR 156 (258)
T ss_pred hHHHhcceEEEccccc-cCCCCcHHHHHHHHHHhc-CCC-CHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHHHH
Confidence 1123567999999974 566789999998752111 100 11223445778899998841 13588999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEe------CCeEEEec
Q 035832 169 LALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMD------MGGFLVEQ 241 (245)
Q Consensus 169 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~------~G~i~~~~ 241 (245)
|+|||||+.+|++|||||||+|||+.++..+.++|++++++.|||++||+++++..+||++++|+ +|+++..+
T Consensus 157 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tviivsH~~~~~~~~~d~i~~l~~~~~~~~g~i~~~~ 235 (258)
T PRK14241 157 LCIARAIAVEPDVLLMDEPCSALDPISTLAIEDLINELKQDYTIVIVTHNMQQAARVSDQTAFFNLEATGKPGRLVEID 235 (258)
T ss_pred HHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccCCCCceEEecC
Confidence 99999999999999999999999999999999999998766899999999999999999999997 79998654
|
|
| >COG1123 ATPase components of various ABC-type transport systems, contain duplicated ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-52 Score=383.73 Aligned_cols=225 Identities=29% Similarity=0.409 Sum_probs=190.5
Q ss_pred ceEEEEeEEEECCCC--ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC----cceEEEcCccCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGT--QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPT----SGSINIRGYNNDGEPNN 89 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~--~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~----~G~i~~~g~~~~~~~~~ 89 (245)
++|+++||++.|... ...+++||||++++||++||+|+|||||||+.++|.|++++. +|+|.|+|+++.+....
T Consensus 4 ~lL~V~nL~v~~~~~~~~~~~v~~vsf~v~~GE~lgIvGESGsGKSt~a~~i~gll~~~~~~~~G~I~~~g~dl~~l~~~ 83 (539)
T COG1123 4 PLLEVENLTVEFATDGGRVPAVRDVSFEVEPGEILGIVGESGSGKSTLALALMGLLPEGGRITSGEVILDGRDLLGLSER 83 (539)
T ss_pred ceEEEeceEEEEecCCcceeeeecceEEecCCcEEEEEcCCCCCHHHHHHHHhccCCCCCcccceEEEECCcchhcCCHH
Confidence 489999999998643 235999999999999999999999999999999999999987 89999999988766554
Q ss_pred CCCCCCCCcEEEEecCCCCCCCc-ccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccC-CCCCCCCChHHHH
Q 035832 90 SPEPLPPEKVGIVFQFPERYFVA-DNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSL-DKDPHSLSGGYKR 167 (245)
Q Consensus 90 ~~~~~~~~~i~~v~Q~~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~~~~~~LSgGqkq 167 (245)
.....+.++|+|+||+|...+++ +|+.+.+.-.... ... ....+.++++.++++.+||++... +++|++|||||||
T Consensus 84 ~~r~~rg~~Ia~i~Q~p~~slnP~~tIg~Qi~E~~~~-h~~-~~~~ea~~~a~elL~~Vgl~~~~~~~~yPheLSGG~rQ 161 (539)
T COG1123 84 EMRKLRGKRIAMIFQDPMTSLNPVMTIGDQIREALRL-HGK-GSRAEARKRAVELLEQVGLPDPERRDRYPHQLSGGMRQ 161 (539)
T ss_pred HHHHhccccEEEEecCchhhcCchhhHHHHHHHHHHH-hcc-ccHHHHHHHHHHHHHHcCCCChhhhccCCcccCchHHH
Confidence 44455678899999999777766 6776665543111 111 114456678899999999987532 3599999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 168 RLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 168 rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
||+||+||+.+|++||+||||++||+..+.+|+++|+++.+ ++++|+||||+..++++||||++|++|+++..+.
T Consensus 162 Rv~iAmALa~~P~LLIaDEPTTaLDvt~q~qIL~llk~l~~e~g~a~l~ITHDl~Vva~~aDrv~Vm~~G~iVE~G~ 238 (539)
T COG1123 162 RVMIAMALALKPKLLIADEPTTALDVTTQAQILDLLKDLQRELGMAVLFITHDLGVVAELADRVVVMYKGEIVETGP 238 (539)
T ss_pred HHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHHHHHHHcCcEEEEEcCCHHHHHHhcCeEEEEECCEEEEecC
Confidence 99999999999999999999999999999999999999973 5899999999999999999999999999998764
|
|
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-52 Score=389.28 Aligned_cols=220 Identities=23% Similarity=0.323 Sum_probs=185.7
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
.++|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...+.. ..
T Consensus 3 ~~~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~---~~ 77 (510)
T PRK09700 3 TPYISMAGIGKSFGP--VHALKSVNLTVYPGEIHALLGENGAGKSTLMKVLSGIHEPTKGTITINNINYNKLDHK---LA 77 (510)
T ss_pred CceEEEeeeEEEcCC--eEEeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCcCCCccEEEECCEECCCCCHH---HH
Confidence 368999999999964 4699999999999999999999999999999999999999999999999887532210 11
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCC---CCch-hHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQ---SGSI-QLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLA 170 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~---~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ 170 (245)
++++++|+||++. +++..||.||+.++.... .... ........++.++++.+|+.+. .++++.+|||||||||+
T Consensus 78 ~~~~i~~v~q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~~LSgG~~qrv~ 155 (510)
T PRK09700 78 AQLGIGIIYQELS-VIDELTVLENLYIGRHLTKKVCGVNIIDWREMRVRAAMMLLRVGLKVD-LDEKVANLSISHKQMLE 155 (510)
T ss_pred HHCCeEEEeeccc-ccCCCcHHHHhhhccccccccccccccCHHHHHHHHHHHHHHcCCCCC-cccchhhCCHHHHHHHH
Confidence 2356999999984 567789999998753210 0100 0112234567889999999875 79999999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 171 LAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 171 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|||||+.+|++|||||||+|||+.++..++++|+++++ +.|||++|||++++..+||++++|++|+++..+
T Consensus 156 ia~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tiiivsHd~~~~~~~~d~v~~l~~G~i~~~g 227 (510)
T PRK09700 156 IAKTLMLDAKVIIMDEPTSSLTNKEVDYLFLIMNQLRKEGTAIVYISHKLAEIRRICDRYTVMKDGSSVCSG 227 (510)
T ss_pred HHHHHhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEeeec
Confidence 99999999999999999999999999999999999864 689999999999999999999999999997654
|
|
| >TIGR02323 CP_lyasePhnK phosphonate C-P lyase system protein PhnK | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.8e-52 Score=356.76 Aligned_cols=222 Identities=27% Similarity=0.315 Sum_probs=178.7
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCcc-----CCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYN-----NDGEPNNS 90 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~-----~~~~~~~~ 90 (245)
++|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|++ +...+...
T Consensus 2 ~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~ 79 (253)
T TIGR02323 2 PLLQVSGLSKSYGG--GKGCRDVSFDLYPGEVLGIVGESGSGKSTLLGCLAGRLAPDHGTATYIMRSGAELELYQLSEAE 79 (253)
T ss_pred ceEEEeeeEEEeCC--ceEeecceEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEEecccccccccccCCHHH
Confidence 47999999999964 468999999999999999999999999999999999999999999999876 43211100
Q ss_pred CCCCCCCcEEEEecCCCC-CCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHH
Q 035832 91 PEPLPPEKVGIVFQFPER-YFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRL 169 (245)
Q Consensus 91 ~~~~~~~~i~~v~Q~~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv 169 (245)
....+++.++|+||++.. .+...++.+|+.+........ . .......+.++++.+++....+++.+.+|||||||||
T Consensus 80 ~~~~~~~~i~~~~q~~~~~~~~~~~~~~~i~~~~~~~~~~-~-~~~~~~~~~~~l~~l~l~~~~~~~~~~~LSgG~~qrv 157 (253)
T TIGR02323 80 RRRLMRTEWGFVHQNPRDGLRMRVSAGANIGERLMAIGAR-H-YGNIRAAAHDWLEEVEIDPTRIDDLPRAFSGGMQQRL 157 (253)
T ss_pred HHHhhhcceEEEEeCcccccCccccHHHHHHHHHHHhccc-c-hHHHHHHHHHHHHHcCCChhhhhcCchhcCHHHHHHH
Confidence 000123569999999742 234568888886431100000 0 1122356788999999963236899999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-c-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 170 ALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLK-K-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 170 ~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+|||||+.+|++|||||||++||+.+++.++++|+++. + +.|||++||+++++..+||++++|++|+++..+
T Consensus 158 ~laral~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~vsH~~~~~~~~~d~~~~l~~G~i~~~~ 231 (253)
T TIGR02323 158 QIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRDLGLAVIIVTHDLGVARLLAQRLLVMQQGRVVESG 231 (253)
T ss_pred HHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999975 3 689999999999999999999999999998654
|
Members of this family are the PhnK protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated complex. This protein (PhnK) and the adjacent-encoded PhnL resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this complex rather than part of a transporter per se. |
| >cd03248 ABCC_TAP TAP, the Transporter Associated with Antigen Processing; TAP is essential for peptide delivery from the cytosol into the lumen of the endoplasmic reticulum (ER), where these peptides are loaded on major histocompatibility complex (MHC) I molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.9e-52 Score=352.08 Aligned_cols=215 Identities=27% Similarity=0.387 Sum_probs=177.2
Q ss_pred CcceEEEEeEEEECCCC-ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGT-QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPE 92 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 92 (245)
..++|+++|++++|++. ..++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.....
T Consensus 8 ~~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~---- 83 (226)
T cd03248 8 LKGIVKFQNVTFAYPTRPDTLVLQDVSFTLHPGEVTALVGPSGSGKSTVVALLENFYQPQGGQVLLDGKPISQYEH---- 83 (226)
T ss_pred cCceEEEEEEEEEeCCCCCCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCcEEEECCCchHHcCH----
Confidence 35679999999999642 2369999999999999999999999999999999999999999999999987643211
Q ss_pred CCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchh-HHHHHHHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHH
Q 035832 93 PLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQ-LKEYLALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRL 169 (245)
Q Consensus 93 ~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~-~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv 169 (245)
..+++.++|+||++. ++ ..|+.+|+.++.... .... ........+.++++.+ |+... .++++.+|||||||||
T Consensus 84 ~~~~~~i~~~~q~~~-l~-~~tv~~nl~~~~~~~-~~~~~~~~~~~~~~~~~l~~l~~gl~~~-~~~~~~~LSgG~~qrv 159 (226)
T cd03248 84 KYLHSKVSLVGQEPV-LF-ARSLQDNIAYGLQSC-SFECVKEAAQKAHAHSFISELASGYDTE-VGEKGSQLSGGQKQRV 159 (226)
T ss_pred HHHHhhEEEEecccH-HH-hhhHHHHhccccCCC-CHHHHHHHHHHcCcHHHHHhccccccch-hhcCCCcCCHHHHHHH
Confidence 123467999999984 44 579999998763221 1111 0111122356778888 78765 6889999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeE
Q 035832 170 ALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGF 237 (245)
Q Consensus 170 ~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i 237 (245)
+|||||+.+|++|||||||++||+.+++.+.++|+++.++.|||++|||++++. .||++++|++|++
T Consensus 160 ~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~~d~i~~l~~g~i 226 (226)
T cd03248 160 AIARALIRNPQVLILDEATSALDAESEQQVQQALYDWPERRTVLVIAHRLSTVE-RADQILVLDGGRI 226 (226)
T ss_pred HHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH-hCCEEEEecCCcC
Confidence 999999999999999999999999999999999999876689999999999986 5999999999874
|
Loaded MHC I leave the ER and display their antigenic cargo on the cell surface to cytotoxic T cells. Subsequently, virus-infected or malignantly transformed cells can be eliminated. TAP belongs to the large family of ATP-binding cassette (ABC) transporters, which translocate a vast variety of solutes across membranes. |
| >PRK14270 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-51 Score=354.10 Aligned_cols=219 Identities=26% Similarity=0.386 Sum_probs=181.1
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CcceEEEcCccCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP-----TSGSINIRGYNNDGEPNN 89 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~~~~~~~ 89 (245)
.++|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|.++.....
T Consensus 2 ~~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~~~G~i~~~g~~i~~~~~- 78 (251)
T PRK14270 2 KIKMESKNLNLWYGE--KQALNDINLPIYENKITALIGPSGCGKSTFLRCLNRMNDLISNVKIEGEVLLDGKNIYDKDV- 78 (251)
T ss_pred ccEEEEEEeEEEECC--eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHHhccCcccCCCCccEEEECCEecccccc-
Confidence 368999999999964 4699999999999999999999999999999999999875 79999999998743211
Q ss_pred CCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC---ccCCCCCCCCChHHH
Q 035832 90 SPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG---TSLDKDPHSLSGGYK 166 (245)
Q Consensus 90 ~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqk 166 (245)
.....++.++|+||++. ++. .|+.+|+.++.... .. ........++.++++.+++.+ ...++++.+||+|||
T Consensus 79 -~~~~~~~~i~~~~q~~~-~~~-~tv~enl~~~~~~~-~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~G~~ 153 (251)
T PRK14270 79 -DVVELRKRVGMVFQKPN-PFP-MSIYDNVAYGPRIH-GI-KDKKELDKIVEWALKKAALWDEVKDDLKKSALKLSGGQQ 153 (251)
T ss_pred -cHHHHHhheEEEecCCC-cCC-CcHHHHHHhHHHhc-CC-CcHHHHHHHHHHHHHHcCCchhhhhHhhCCcccCCHHHH
Confidence 11122567999999984 444 89999998752111 10 011223345677889998742 125889999999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 167 RRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 167 qrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||++|||||+.+|++|||||||+|||+.++..++++|+++.++.|||++||+++++..+||++++|++|+++..+
T Consensus 154 qrv~laral~~~p~llllDEP~~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~d~v~~l~~G~i~~~~ 228 (251)
T PRK14270 154 QRLCIARTIAVKPDVILMDEPTSALDPISTLKIEDLMVELKKEYTIVIVTHNMQQASRVSDYTAFFLMGDLIEFN 228 (251)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEEcCHHHHHHhcCEEEEEECCeEEEeC
Confidence 999999999999999999999999999999999999999876789999999999999999999999999998754
|
|
| >cd03245 ABCC_bacteriocin_exporters ABC-type bacteriocin exporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.1e-52 Score=349.91 Aligned_cols=206 Identities=32% Similarity=0.495 Sum_probs=170.7
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|++++|++..+.+|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|+++|+++..... ...++
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~----~~~~~ 78 (220)
T cd03245 3 IEFRNVSFSYPNQEIPALDNVSLTIRAGEKVAIIGRVGSGKSTLLKLLAGLYKPTSGSVLLDGTDIRQLDP----ADLRR 78 (220)
T ss_pred EEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCeEEECCEEhHHCCH----HHHHh
Confidence 78999999996433469999999999999999999999999999999999999999999999987643211 11245
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCC-----------CCCCCChHHH
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDK-----------DPHSLSGGYK 166 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~-----------~~~~LSgGqk 166 (245)
.++|+||++. ++ ..|+.||+.++... .. ...+.++++.+++.+. +++ .+.+||||||
T Consensus 79 ~i~~~~q~~~-~~-~~tv~e~l~~~~~~--~~-------~~~~~~~l~~~~l~~~-~~~~~~~~~~~~~~~~~~LSgG~~ 146 (220)
T cd03245 79 NIGYVPQDVT-LF-YGTLRDNITLGAPL--AD-------DERILRAAELAGVTDF-VNKHPNGLDLQIGERGRGLSGGQR 146 (220)
T ss_pred hEEEeCCCCc-cc-cchHHHHhhcCCCC--CC-------HHHHHHHHHHcCcHHH-HHhccccccceecCCCccCCHHHH
Confidence 7999999984 44 46999999875221 10 1123456666677543 344 3479999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEe
Q 035832 167 RRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240 (245)
Q Consensus 167 qrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~ 240 (245)
||++||||++.+|++|||||||+|||+.+++.++++|++++++.|||++|||++++ .+||++++|++|+++..
T Consensus 147 qrl~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~~sH~~~~~-~~~d~v~~l~~g~i~~~ 219 (220)
T cd03245 147 QAVALARALLNDPPILLLDEPTSAMDMNSEERLKERLRQLLGDKTLIIITHRPSLL-DLVDRIIVMDSGRIVAD 219 (220)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHH-HhCCEEEEEeCCeEeec
Confidence 99999999999999999999999999999999999999987568999999999986 69999999999998753
|
Many non-lantibiotic bacteriocins of lactic acid bacteria are produced as precursors which have N-terminal leader peptides that share similarities in amino acid sequence and contain a conserved processing site of two glycine residues in positions -1 and -2. A dedicated ATP-binding cassette (ABC) transporter is responsible for the proteolytic cleavage of the leader peptides and subsequent translocation of the bacteriocins across the cytoplasmic membrane. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-51 Score=387.33 Aligned_cols=213 Identities=25% Similarity=0.392 Sum_probs=184.7
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
.++|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+. ...
T Consensus 9 ~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~---~~~ 83 (510)
T PRK15439 9 PPLLCARSISKQYSG--VEVLKGIDFTLHAGEVHALLGGNGAGKSTLMKIIAGIVPPDSGTLEIGGNPCARLTP---AKA 83 (510)
T ss_pred CceEEEEeEEEEeCC--ceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCH---HHH
Confidence 357999999999964 469999999999999999999999999999999999999999999999987743211 111
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
+++.+||+||++. +++..||.||+.++... .....+++.++++.+++.+. +++++.+|||||||||+||||
T Consensus 84 ~~~~i~~v~q~~~-~~~~~tv~e~l~~~~~~-------~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgG~~qrv~la~a 154 (510)
T PRK15439 84 HQLGIYLVPQEPL-LFPNLSVKENILFGLPK-------RQASMQKMKQLLAALGCQLD-LDSSAGSLEVADRQIVEILRG 154 (510)
T ss_pred HhCCEEEEeccCc-cCCCCcHHHHhhccccc-------chHHHHHHHHHHHHcCCCcc-ccCChhhCCHHHHHHHHHHHH
Confidence 2346999999985 67788999999886321 11233467889999999875 699999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|+.+|++|||||||+|||+.+++.++++|+++++ +.|||++|||++++..+||++++|++|+++..+
T Consensus 155 L~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~i~~l~~G~i~~~g 222 (510)
T PRK15439 155 LMRDSRILILDEPTASLTPAETERLFSRIRELLAQGVGIVFISHKLPEIRQLADRISVMRDGTIALSG 222 (510)
T ss_pred HHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEec
Confidence 9999999999999999999999999999999864 689999999999999999999999999998654
|
|
| >PRK14251 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-51 Score=353.92 Aligned_cols=218 Identities=26% Similarity=0.439 Sum_probs=180.1
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCcceEEEcCccCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK-----PTSGSINIRGYNNDGEPNNS 90 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~~~~ 90 (245)
++|+++|++++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.....
T Consensus 3 ~~l~~~~l~~~~~~--~~~l~~~sl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~p~~~~~G~v~i~g~~~~~~~~-- 78 (251)
T PRK14251 3 NIISAKDVHLSYGN--YEALHGISLDFEEKELTALIGPSGCGKSTFLRCLNRMNDDIENIKITGEIKFEGQNIYGSKM-- 78 (251)
T ss_pred ceEEEEeeEEEECC--eeeeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhhccccccCCCcceEEEECCEEcccccc--
Confidence 47999999999964 469999999999999999999999999999999999997 479999999988643111
Q ss_pred CCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC---ccCCCCCCCCChHHHH
Q 035832 91 PEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG---TSLDKDPHSLSGGYKR 167 (245)
Q Consensus 91 ~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkq 167 (245)
.....++.++|++|++. ++ ..|+.||+.++....... ........+.++++.+++.. ..+++++.+|||||||
T Consensus 79 ~~~~~~~~i~~~~q~~~-~~-~~tv~enl~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~q 154 (251)
T PRK14251 79 DLVELRKEVGMVFQQPT-PF-PFSVYDNVAYGLKIAGVK--DKELIDQRVEESLKQAAIWKETKDNLDRNAQAFSGGQQQ 154 (251)
T ss_pred hHHHhhccEEEEecCCc-cC-CCcHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHcCCCcchHHHhccChhhCCHHHHH
Confidence 11123567999999984 44 479999998753211100 11122345677888899841 1258899999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 168 RLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 168 rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|++|||||+.+|+++||||||++||+.+++.+.+.|+++.++.|||++||+++++..+||++++|++|+++..+
T Consensus 155 r~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~ 228 (251)
T PRK14251 155 RICIARALAVRPKVVLLDEPTSALDPISSSEIEETLMELKHQYTFIMVTHNLQQAGRISDQTAFLMNGDLIEAG 228 (251)
T ss_pred HHHHHHHHhcCCCEEEecCCCccCCHHHHHHHHHHHHHHHcCCeEEEEECCHHHHHhhcCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999876789999999999999999999999999998654
|
|
| >PRK14237 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-51 Score=355.73 Aligned_cols=221 Identities=25% Similarity=0.404 Sum_probs=183.0
Q ss_pred CCcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCcceEEEcCccCCCCC
Q 035832 13 CDYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK-----PTSGSINIRGYNNDGEP 87 (245)
Q Consensus 13 ~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~ 87 (245)
...++|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++....
T Consensus 16 ~~~~~l~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~ 93 (267)
T PRK14237 16 EEEIALSTKDLHVYYGK--KEAIKGIDMQFEKNKITALIGPSGSGKSTYLRSLNRMNDTIDIARVTGQILYRGIDINRKE 93 (267)
T ss_pred CCCeEEEEeeEEEEECC--eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhccCccCCCCcceEEEECCEEccccc
Confidence 34568999999999964 579999999999999999999999999999999999996 58999999998874211
Q ss_pred CCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC---ccCCCCCCCCChH
Q 035832 88 NNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG---TSLDKDPHSLSGG 164 (245)
Q Consensus 88 ~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgG 164 (245)
. .....++.++|+||++. +++ .|+.+|+.++.... .. .........+.++++.+++.+ ..+++++.+||||
T Consensus 94 ~--~~~~~~~~i~~v~q~~~-~~~-~tv~eni~~~~~~~-~~-~~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G 167 (267)
T PRK14237 94 I--NVYEMRKHIGMVFQRPN-PFA-KSIYENITFALERA-GV-KDKKVLDEIVETSLKQAALWDQVKDDLHKSALTLSGG 167 (267)
T ss_pred C--ChHHHhcceEEEecCCc-ccc-ccHHHHHHhHHHhc-CC-CCHHHHHHHHHHHHHHcCCCchhhhhhcCCcccCCHH
Confidence 1 01123567999999974 444 69999998753211 11 012223445778899998842 1358899999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 165 YKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 165 qkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||||++|||||+.+|++|||||||+|||+.++..+.++|+++.++.|||++||+++++..+||++++|++|+++..+
T Consensus 168 ~~qrl~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~~~~~~d~i~~l~~G~i~~~g 244 (267)
T PRK14237 168 QQQRLCIARAIAVKPDILLMDEPASALDPISTMQLEETMFELKKNYTIIIVTHNMQQAARASDYTAFFYLGDLIEYD 244 (267)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999976789999999999999999999999999998754
|
|
| >PRK14259 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-51 Score=357.91 Aligned_cols=211 Identities=22% Similarity=0.384 Sum_probs=174.3
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCcceEEEcCccCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK-----PTSGSINIRGYNNDGEPN 88 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~~ 88 (245)
+.++|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.....
T Consensus 10 ~~~~l~i~nl~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~v~~~g~~i~~~~~ 87 (269)
T PRK14259 10 KNIIISLQNVTISYGT--FEAVKNVFCDIPRGKVTALIGPSGCGKSTVLRSLNRMNDLIEGCSLKGRVLFDGTDLYDPRV 87 (269)
T ss_pred CCceEEEEeEEEEECC--EEEEcceEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccC
Confidence 3457999999999964 469999999999999999999999999999999999987 689999999987642111
Q ss_pred CCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC---ccCCCCCCCCChHH
Q 035832 89 NSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG---TSLDKDPHSLSGGY 165 (245)
Q Consensus 89 ~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGq 165 (245)
. ...++++++|+||++. ++. .|+.||+.++.... ... ....+.+.++++.+++.. ..+++++.+|||||
T Consensus 88 ~--~~~~~~~i~~v~q~~~-l~~-~tv~enl~~~~~~~-~~~---~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~ 159 (269)
T PRK14259 88 D--PVEVRRRIGMVFQQPN-PFP-KSIYENIAFGARIN-GYT---GDMDELVERSLRKAAVWDECKDKLNESGYSLSGGQ 159 (269)
T ss_pred C--HHHHhhceEEEccCCc-cch-hhHHHHHhhhhhhc-CCc---HHHHHHHHHHHHHhCCcchhhhhhCCCcccCCHHH
Confidence 0 1123467999999984 454 59999998763211 111 112334567788887631 13588999999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeC
Q 035832 166 KRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDM 234 (245)
Q Consensus 166 kqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~ 234 (245)
|||++|||||+.+|++|||||||+|||+.+++.++++|++++++.|||++||+++++..+||++++|++
T Consensus 160 ~qrl~laral~~~p~lllLDEPt~gLD~~~~~~l~~~l~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~ 228 (269)
T PRK14259 160 QQRLCIARTIAIEPEVILMDEPCSALDPISTLKIEETMHELKKNFTIVIVTHNMQQAVRVSDMTAFFNA 228 (269)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEec
Confidence 999999999999999999999999999999999999999987678999999999999999999999996
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-51 Score=386.43 Aligned_cols=218 Identities=24% Similarity=0.379 Sum_probs=184.9
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
++|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...+. ...+
T Consensus 3 ~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~i~~~~~---~~~~ 77 (501)
T PRK11288 3 PYLSFDGIGKTFPG--VKALDDISFDCRAGQVHALMGENGAGKSTLLKILSGNYQPDAGSILIDGQEMRFAST---TAAL 77 (501)
T ss_pred ceEEEeeeEEEECC--EEEEeeeeEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEECCCCCH---HHHH
Confidence 58999999999964 469999999999999999999999999999999999999999999999988743211 1123
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
++++||+||++. +++..|+.+|+.++...............+++.++++.+++... .++++.+|||||||||+|||||
T Consensus 78 ~~~i~~v~q~~~-~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgGq~qrv~laral 155 (501)
T PRK11288 78 AAGVAIIYQELH-LVPEMTVAENLYLGQLPHKGGIVNRRLLNYEAREQLEHLGVDID-PDTPLKYLSIGQRQMVEIAKAL 155 (501)
T ss_pred hCCEEEEEechh-ccCCCCHHHHHHhcccccccCCCCHHHHHHHHHHHHHHcCCCCC-cCCchhhCCHHHHHHHHHHHHH
Confidence 467999999984 66778999999986321110100122334567889999999864 6899999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEe
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~ 240 (245)
+.+|++|||||||++||+.+++.++++|+++.+ +.|||++|||++++..+||++++|++|+++..
T Consensus 156 ~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tiiiitHd~~~~~~~~d~i~~l~~G~i~~~ 221 (501)
T PRK11288 156 ARNARVIAFDEPTSSLSAREIEQLFRVIRELRAEGRVILYVSHRMEEIFALCDAITVFKDGRYVAT 221 (501)
T ss_pred HhCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEee
Confidence 999999999999999999999999999999864 68999999999999999999999999999764
|
|
| >PRK13547 hmuV hemin importer ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-51 Score=358.84 Aligned_cols=217 Identities=24% Similarity=0.297 Sum_probs=181.1
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC--------cceEEEcCccCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPT--------SGSINIRGYNNDGEPN 88 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~--------~G~i~~~g~~~~~~~~ 88 (245)
||+++|++++|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++.....
T Consensus 1 ml~~~nl~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~laG~~~p~~~~~~~~~~G~i~~~g~~~~~~~~ 78 (272)
T PRK13547 1 MLTADHLHVARRH--RAILRDLSLRIEPGRVTALLGRNGAGKSTLLKALAGDLTGGGAPRGARVTGDVTLNGEPLAAIDA 78 (272)
T ss_pred CeEEEEEEEEECC--EeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCcccccccCCceEEEECCEEcccCCH
Confidence 5899999999964 46999999999999999999999999999999999999998 9999999987643211
Q ss_pred CCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCC-chhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHH
Q 035832 89 NSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSG-SIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKR 167 (245)
Q Consensus 89 ~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkq 167 (245)
..+++.++|+||++. .++..|+.||+.++...... .........+.+.++++.+++.+. .++++.+|||||||
T Consensus 79 ----~~~~~~~~~v~q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgG~~q 152 (272)
T PRK13547 79 ----PRLARLRAVLPQAAQ-PAFAFSAREIVLLGRYPHARRAGALTHRDGEIAWQALALAGATAL-VGRDVTTLSGGELA 152 (272)
T ss_pred ----HHHHhhcEEecccCC-CCCCCcHHHHHhhcccccccccccCCHHHHHHHHHHHHHcCcHhh-hcCCcccCCHHHHH
Confidence 112346899999974 34568999999875311100 000011223457788999999875 69999999999999
Q ss_pred HHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCe
Q 035832 168 RLALAIQLV---------QVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGG 236 (245)
Q Consensus 168 rv~iAral~---------~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~ 236 (245)
||+|||||+ .+|++|||||||+|||+.+++.++++|+++.+ +.|||++|||++++..+||++++|++|+
T Consensus 153 rv~laral~~~~~~~~~~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~~tviiisH~~~~~~~~~d~i~~l~~G~ 232 (272)
T PRK13547 153 RVQFARVLAQLWPPHDAAQPPRYLLLDEPTAALDLAHQHRLLDTVRRLARDWNLGVLAIVHDPNLAARHADRIAMLADGA 232 (272)
T ss_pred HHHHHHHHhccccccccCCCCCEEEEcCccccCCHHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEECCe
Confidence 999999999 59999999999999999999999999999864 5899999999999999999999999999
Q ss_pred EEEec
Q 035832 237 FLVEQ 241 (245)
Q Consensus 237 i~~~~ 241 (245)
++..+
T Consensus 233 i~~~g 237 (272)
T PRK13547 233 IVAHG 237 (272)
T ss_pred EEEec
Confidence 98654
|
|
| >cd03267 ABC_NatA_like Similar in sequence to NatA, this is the ATPase component of a bacterial ABC-type Na+ transport system called NatAB, which catalyzes ATP-dependent electrogenic Na+ extrusion without mechanically coupled to proton or K+ uptake | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-51 Score=351.89 Aligned_cols=200 Identities=29% Similarity=0.431 Sum_probs=168.1
Q ss_pred cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCC
Q 035832 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFV 111 (245)
Q Consensus 32 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~ 111 (245)
+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ...+++++|+||+...+++
T Consensus 34 ~~il~~vs~~i~~Ge~~~i~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~~~~~~-----~~~~~~i~~~~~~~~~~~~ 108 (236)
T cd03267 34 VEALKGISFTIEKGEIVGFIGPNGAGKTTTLKILSGLLQPTSGEVRVAGLVPWKRR-----KKFLRRIGVVFGQKTQLWW 108 (236)
T ss_pred eeeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEccccc-----hhhcccEEEEcCCccccCC
Confidence 46999999999999999999999999999999999999999999999998753211 1235679999854333566
Q ss_pred cccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 035832 112 ADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGL 191 (245)
Q Consensus 112 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~L 191 (245)
..|+.||+.+..... .. ........+.++++.+++.+. .++++.+||||||||++|||||+.+|++|||||||+||
T Consensus 109 ~~tv~e~l~~~~~~~-~~--~~~~~~~~~~~~l~~~gl~~~-~~~~~~~LS~G~~qrl~la~al~~~p~llllDEPt~~L 184 (236)
T cd03267 109 DLPVIDSFYLLAAIY-DL--PPARFKKRLDELSELLDLEEL-LDTPVRQLSLGQRMRAEIAAALLHEPEILFLDEPTIGL 184 (236)
T ss_pred CCcHHHHHHHHHHHc-CC--CHHHHHHHHHHHHHHcCChhH-hcCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCCCCC
Confidence 789999997642111 11 112233456788999999875 68999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEe
Q 035832 192 DWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240 (245)
Q Consensus 192 D~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~ 240 (245)
|+.+++.+.++|.++.+ +.|||++||+++++..+||++++|++|+++..
T Consensus 185 D~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~G~i~~~ 235 (236)
T cd03267 185 DVVAQENIRNFLKEYNRERGTTVLLTSHYMKDIEALARRVLVIDKGRLLYD 235 (236)
T ss_pred CHHHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHHhCCEEEEEeCCEEEec
Confidence 99999999999999853 58999999999999999999999999998754
|
NatB possess six putative membrane spanning regions at its C-terminus. In B. subtilis, NatAB is inducible by agents such as ethanol and protonophores, which lower the protonmotive force across the membrane. The closest sequence similarity to NatA is exhibited by DrrA of the two-component daunomycin- and doxorubicin-efflux system. Hence, the functional NatAB is presumably assembled with two copies of the single ATP-binding protein and the single intergral membrane protein. |
| >PRK14262 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-51 Score=352.50 Aligned_cols=218 Identities=28% Similarity=0.379 Sum_probs=180.4
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CcceEEEcCccCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP-----TSGSINIRGYNNDGEPNNS 90 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~~~~~~~~ 90 (245)
+||+++|+++.|++ +++|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++...+.
T Consensus 2 ~~l~~~~l~~~~~~--~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~i~g~~~~~~~~-- 77 (250)
T PRK14262 2 PIIEIENFSAYYGE--KKAVKNVTMKIFKNQITAIIGPSGCGKTTLLRSINRMNDHIPGFRVEGKIYFKGQDIYDPQL-- 77 (250)
T ss_pred ceEEEEeeEEEeCC--ceeEeeeeEeecCCCEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEcccchh--
Confidence 47999999999964 4699999999999999999999999999999999999984 89999999987643111
Q ss_pred CCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCc---cCCCCCCCCChHHHH
Q 035832 91 PEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGT---SLDKDPHSLSGGYKR 167 (245)
Q Consensus 91 ~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkq 167 (245)
....+++.++|+||++. ++. .|+++|+.++.... ... ......+.+.++++.+++... ..++++.+|||||||
T Consensus 78 ~~~~~~~~i~~~~q~~~-~~~-~tv~e~l~~~~~~~-~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~q 153 (250)
T PRK14262 78 DVTEYRKKVGMVFQKPT-PFP-MSIYDNVAFGPRIH-GVK-SKHKLDRIVEESLKKAALWDEVKSELNKPGTRLSGGQQQ 153 (250)
T ss_pred hHHHhhhhEEEEecCCc-cCc-ccHHHHHHHHHHHc-CCC-cHHHHHHHHHHHHHHcCCCchhHHHHhCChhhcCHHHHH
Confidence 01123567999999984 444 89999998752111 110 112233456778888888531 258899999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 168 RLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 168 rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|++|||||+.+|++|||||||+|||+.++..+.++|.++.++.|||++||+++++..+||++++|++|+++..+
T Consensus 154 r~~la~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tili~sH~~~~~~~~~d~i~~l~~G~i~~~g 227 (250)
T PRK14262 154 RLCIARALAVEPEVILLDEPTSALDPIATQRIEKLLEELSENYTIVIVTHNIGQAIRIADYIAFMYRGELIEYG 227 (250)
T ss_pred HHHHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEec
Confidence 99999999999999999999999999999999999999876789999999999999999999999999998654
|
|
| >PRK14254 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-51 Score=357.95 Aligned_cols=218 Identities=26% Similarity=0.447 Sum_probs=180.8
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCcceEEEcCccCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK-----PTSGSINIRGYNNDGEPN 88 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~~ 88 (245)
+.++|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++.....
T Consensus 36 ~~~~l~i~~l~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~~~~p~~G~I~i~G~~i~~~~~ 113 (285)
T PRK14254 36 GETVIEARDLNVFYGD--EQALDDVSMDIPENQVTAMIGPSGCGKSTFLRCINRMNDLIDAARVEGELTFRGKNVYDADV 113 (285)
T ss_pred CCceEEEEEEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCcccCCCCceEEEECCEEcccccc
Confidence 5678999999999964 469999999999999999999999999999999999987 689999999988643111
Q ss_pred CCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC---ccCCCCCCCCChHH
Q 035832 89 NSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG---TSLDKDPHSLSGGY 165 (245)
Q Consensus 89 ~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGq 165 (245)
. ....+++++|+||++. +++ .|+.||+.++.... .. . . ....++.++++.+++.. ..+++++.+|||||
T Consensus 114 ~--~~~~~~~i~~v~q~~~-l~~-~tv~enl~~~~~~~-~~-~-~-~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LSgGe 185 (285)
T PRK14254 114 D--PVALRRRIGMVFQKPN-PFP-KSIYDNVAYGLKIQ-GY-D-G-DIDERVEESLRRAALWDEVKDQLDSSGLDLSGGQ 185 (285)
T ss_pred c--hHhhhccEEEEecCCc-cCc-CCHHHHHHHHHHHc-CC-c-H-HHHHHHHHHHHHcCCCchhHHHHhCCcccCCHHH
Confidence 1 1123568999999984 454 59999998752111 11 1 1 23345788899999852 12588999999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEE-EEeCCeEEEec
Q 035832 166 KRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSW-RMDMGGFLVEQ 241 (245)
Q Consensus 166 kqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~-~l~~G~i~~~~ 241 (245)
||||+|||||+.+|++|||||||+|||+.+++.+.++|++++++.|||++|||++++..+|||++ +|++|+++..+
T Consensus 186 ~qrv~LAraL~~~p~lLLLDEPts~LD~~~~~~l~~~L~~~~~~~tiii~tH~~~~i~~~~dri~v~l~~G~i~~~g 262 (285)
T PRK14254 186 QQRLCIARAIAPDPEVILMDEPASALDPVATSKIEDLIEELAEEYTVVIVTHNMQQAARISDKTAVFLTGGELVEFD 262 (285)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEeeCCEEEEeC
Confidence 99999999999999999999999999999999999999999766899999999999999999975 67999998654
|
|
| >cd03234 ABCG_White The White subfamily represents ABC transporters homologous to the Drosophila white gene, which acts as a dimeric importer for eye pigment precursors | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-51 Score=349.63 Aligned_cols=215 Identities=26% Similarity=0.305 Sum_probs=179.3
Q ss_pred eEEEEeEEEECCCC--ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCcceEEEcCccCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGT--QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK---PTSGSINIRGYNNDGEPNNSP 91 (245)
Q Consensus 17 ~l~~~~l~~~y~~~--~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~ 91 (245)
.+.++|++++|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|+++..
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~G~~~~~~~~~G~i~~~g~~~~~------ 76 (226)
T cd03234 3 VLPWWDVGLKAKNWNKYARILNDVSLHVESGQVMAILGSSGSGKTTLLDAISGRVEGGGTTSGQILFNGQPRKP------ 76 (226)
T ss_pred cceeecceeeeecCccccccccCceEEEcCCeEEEEECCCCCCHHHHHHHHhCccCCCCCCceEEEECCEECCh------
Confidence 46799999999754 2679999999999999999999999999999999999999 999999999987632
Q ss_pred CCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHH-HHHHcCCCCccCCCCCCCCChHHHHHHH
Q 035832 92 EPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQR-AINWVGLDGTSLDKDPHSLSGGYKRRLA 170 (245)
Q Consensus 92 ~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~-~l~~~~l~~~~~~~~~~~LSgGqkqrv~ 170 (245)
..+++.++|+||++. +++.+|+.||+.++.................+.+ .++.+++.+. .++.+.+|||||+||++
T Consensus 77 -~~~~~~i~~~~q~~~-~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrl~ 153 (226)
T cd03234 77 -DQFQKCVAYVRQDDI-LLPGLTVRETLTYTAILRLPRKSSDAIRKKRVEDVLLRDLALTRI-GGNLVKGISGGERRRVS 153 (226)
T ss_pred -HHhcccEEEeCCCCc-cCcCCcHHHHHHHHHHhhcccccchHHHHHHHHHHHHHhhcchhh-hcccccCcCHHHHHHHH
Confidence 123567999999984 6677899999987521111000011111223444 7889999865 68899999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecCh-hHHHhhccEEEEEeCCeEEEe
Q 035832 171 LAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDL-KEMAALVDHSWRMDMGGFLVE 240 (245)
Q Consensus 171 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~-~~~~~~~d~v~~l~~G~i~~~ 240 (245)
|||||+.+|+++||||||+|||+.++..+.++|+++.+ +.|+|++||++ +++..+||++++|++|+++..
T Consensus 154 laral~~~p~illlDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~ 225 (226)
T cd03234 154 IAVQLLWDPKVLILDEPTSGLDSFTALNLVSTLSQLARRNRIVILTIHQPRSDLFRLFDRILLLSSGEIVYS 225 (226)
T ss_pred HHHHHHhCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEecCCCHHHHHhCCEEEEEeCCEEEec
Confidence 99999999999999999999999999999999999864 68999999998 588999999999999999764
|
The eye pigmentation of Drosophila is developed from the synthesis and deposition in the cells of red pigments, which are synthesized from guanine, and brown pigments, which are synthesized from tryptophan. The pigment precursors are encoded by the white, brown, and scarlet genes, respectively. Evidence from genetic and biochemical studies suggest that the White and Brown proteins function as heterodimers to import guanine, while the White and Scarlet proteins function to import tryptophan. However, a recent study also suggests that White may be involved in the transport of a metabolite, such as 3-hydroxykynurenine, across intracellular membranes. Mammalian ABC transporters belonging to the White subfamily (ABCG1, ABCG5, and ABCG8) have been shown to be involved in the regulation of lipid-trafficking mechanisms in |
| >cd03300 ABC_PotA_N PotA is an ABC-type transporter and the ATPase component of the spermidine/putrescine-preferential uptake system consisting of PotA, -B, -C, and -D | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-51 Score=348.40 Aligned_cols=211 Identities=36% Similarity=0.519 Sum_probs=181.4
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|++++|++ +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++..... .++
T Consensus 1 l~~~~l~~~~~~--~~il~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~g~~~~~~G~i~~~g~~~~~~~~------~~~ 72 (232)
T cd03300 1 IELENVSKFYGG--FVALDGVSLDIKEGEFFTLLGPSGCGKTTLLRLIAGFETPTSGEILLDGKDITNLPP------HKR 72 (232)
T ss_pred CEEEeEEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCCh------hhc
Confidence 468999999974 469999999999999999999999999999999999999999999999988753221 246
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ 177 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~ 177 (245)
.++|+||++. .+...|+.+|+.++...... ........+.++++.+|+.+. +++.+.+||+||+||++|||||+.
T Consensus 73 ~i~~~~q~~~-~~~~~t~~~nl~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~-~~~~~~~lS~G~~qrl~laral~~ 147 (232)
T cd03300 73 PVNTVFQNYA-LFPHLTVFENIAFGLRLKKL---PKAEIKERVAEALDLVQLEGY-ANRKPSQLSGGQQQRVAIARALVN 147 (232)
T ss_pred ceEEEecccc-cCCCCcHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHcCCchh-hcCChhhCCHHHHHHHHHHHHHhc
Confidence 7999999985 55678999999865211111 112234457788999999875 799999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+|+++||||||+|||+.+++.++++|+++.+ +.|||++||+++++..+||++++|++|+++..+
T Consensus 148 ~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~i~~l~~G~~~~~~ 213 (232)
T cd03300 148 EPKVLLLDEPLGALDLKLRKDMQLELKRLQKELGITFVFVTHDQEEALTMSDRIAVMNKGKIQQIG 213 (232)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhcCEEEEEECCEEEecC
Confidence 9999999999999999999999999999864 689999999999999999999999999997654
|
PotA has two domains with the N-terminal domain containing the ATPase activity and the residues required for homodimerization with PotA and heterdimerization with PotB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK14240 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-51 Score=351.64 Aligned_cols=217 Identities=25% Similarity=0.396 Sum_probs=179.1
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CcceEEEcCccCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP-----TSGSINIRGYNNDGEPNNSP 91 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~~~~~~~~~ 91 (245)
+|+++||++.|++ +++++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++..... .
T Consensus 3 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~--~ 78 (250)
T PRK14240 3 KISVKDLDLFYGD--FQALKKINLDIEENQVTALIGPSGCGKSTFLRTLNRMNDLIPSVKIEGEVLLDGQDIYKSDI--D 78 (250)
T ss_pred eEEEEEEEEEECC--ceeeecceEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc--c
Confidence 5899999999974 4699999999999999999999999999999999999863 69999999988743111 1
Q ss_pred CCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC---ccCCCCCCCCChHHHHH
Q 035832 92 EPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG---TSLDKDPHSLSGGYKRR 168 (245)
Q Consensus 92 ~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqr 168 (245)
...+++.++|+||++. ++. .|+.+|+.++.... .. .......+.+.++++.+++.+ ...++++.+||||||||
T Consensus 79 ~~~~~~~i~~~~q~~~-~~~-~t~~~ni~~~~~~~-~~-~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 154 (250)
T PRK14240 79 VNQLRKRVGMVFQQPN-PFP-MSIYDNVAYGPRTH-GI-KDKKKLDEIVEKSLKGAALWDEVKDRLKKSALGLSGGQQQR 154 (250)
T ss_pred hHHHhccEEEEecCCc-cCc-ccHHHHHHHHHHhc-CC-CCHHHHHHHHHHHHHHcCCchhhHHHHhcCCCCCCHHHHHH
Confidence 1123567999999984 454 89999998752111 10 011223445777888888742 12588899999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 169 LALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 169 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
++|||||+.+|++|||||||+|||+.++..+.+.|++++++.|||++||+++++..+||++++|++|+++..+
T Consensus 155 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~v~~l~~G~i~~~~ 227 (250)
T PRK14240 155 LCIARALAVEPEVLLMDEPTSALDPISTLKIEELIQELKKDYTIVIVTHNMQQASRISDKTAFFLNGEIVEFG 227 (250)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEEeCHHHHHhhCCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999999999876789999999999999999999999999998754
|
|
| >COG4152 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-52 Score=348.12 Aligned_cols=212 Identities=25% Similarity=0.355 Sum_probs=189.9
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
++|++++|+|+|++ +.+++|+||++++|++++++|||||||||.+|+|.|++.|++|+|.|+|.++... .
T Consensus 1 ~~L~ie~vtK~Fg~--k~av~~isf~v~~G~i~GllG~NGAGKTTtfRmILglle~~~G~I~~~g~~~~~~--------~ 70 (300)
T COG4152 1 MALEIEGVTKSFGD--KKAVDNISFEVPPGEIFGLLGPNGAGKTTTFRMILGLLEPTEGEITWNGGPLSQE--------I 70 (300)
T ss_pred CceEEecchhccCc--eeeecceeeeecCCeEEEeecCCCCCccchHHHHhccCCccCceEEEcCcchhhh--------h
Confidence 46999999999974 6799999999999999999999999999999999999999999999999887432 2
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
+.+|||+|.+-. +++.+||.|.+.|..... + ...++.+..+..||+++++... ..+++.+||.|++|++.+..|+
T Consensus 71 ~~rIGyLPEERG-Ly~k~tv~dql~yla~Lk-G--m~~~e~~~~~~~wLer~~i~~~-~~~kIk~LSKGnqQKIQfisav 145 (300)
T COG4152 71 KNRIGYLPEERG-LYPKMTVEDQLKYLAELK-G--MPKAEIQKKLQAWLERLEIVGK-KTKKIKELSKGNQQKIQFISAV 145 (300)
T ss_pred hhhcccChhhhc-cCccCcHHHHHHHHHHhc-C--CcHHHHHHHHHHHHHhcccccc-ccchHHHhhhhhhHHHHHHHHH
Confidence 468999999975 778999999998742111 1 1245667789999999999986 6999999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
+++|+++|||||||||||.+.+.+.+.+.++++ ++|||++||.|+.++++||++++|++|+.|..+.
T Consensus 146 iHePeLlILDEPFSGLDPVN~elLk~~I~~lk~~GatIifSsH~Me~vEeLCD~llmL~kG~~V~~G~ 213 (300)
T COG4152 146 IHEPELLILDEPFSGLDPVNVELLKDAIFELKEEGATIIFSSHRMEHVEELCDRLLMLKKGQTVLYGT 213 (300)
T ss_pred hcCCCEEEecCCccCCChhhHHHHHHHHHHHHhcCCEEEEecchHHHHHHHhhhhheecCCceEEecc
Confidence 999999999999999999999999999999975 7999999999999999999999999999988764
|
|
| >cd03249 ABC_MTABC3_MDL1_MDL2 MTABC3 (also known as ABCB6) is a mitochondrial ATP-binding cassette protein involved in iron homeostasis and one of four ABC transporters expressed in the mitochondrial inner membrane, the other three being MDL1(ABC7), MDL2, and ATM1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-51 Score=351.66 Aligned_cols=215 Identities=29% Similarity=0.444 Sum_probs=172.4
Q ss_pred EEEEeEEEECCCC-ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGT-QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 18 l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
|+++|+++.|++. .+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... ..++
T Consensus 1 l~i~~l~~~~~~~~~~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~----~~~~ 76 (238)
T cd03249 1 IEFKNVSFRYPSRPDVPILKGLSLTIPPGKTVALVGSSGCGKSTVVSLLERFYDPTSGEILLDGVDIRDLNL----RWLR 76 (238)
T ss_pred CeEEEEEEecCCCCCccceeceEEEecCCCEEEEEeCCCCCHHHHHHHHhccCCCCCCEEEECCEehhhcCH----HHHH
Confidence 4789999999642 2469999999999999999999999999999999999999999999999987643211 1124
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHH-HHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYL-ALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
++++|+||++. ++ ..|+.||+.++.... ......... ...+.++++.+ ++... .++++.+|||||||||+|||
T Consensus 77 ~~i~~~~q~~~-~~-~~tv~e~l~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~~~LS~G~~qrv~la~ 152 (238)
T cd03249 77 SQIGLVSQEPV-LF-DGTIAENIRYGKPDA-TDEEVEEAAKKANIHDFIMSLPDGYDTL-VGERGSQLSGGQKQRIAIAR 152 (238)
T ss_pred hhEEEECCchh-hh-hhhHHHHhhccCCCC-CHHHHHHHHHHcChHHHHHhhcccccee-eccCCccCCHHHHHHHHHHH
Confidence 57999999984 44 479999998753221 110000000 11233444444 55543 57889999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||+.+|++|||||||+|||+.+++.+++.|+++.++.|||++||+++++. +||++++|++|+++..+
T Consensus 153 al~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~g~~vi~~sh~~~~~~-~~d~v~~l~~G~i~~~~ 219 (238)
T cd03249 153 ALLRNPKILLLDEATSALDAESEKLVQEALDRAMKGRTTIVIAHRLSTIR-NADLIAVLQNGQVVEQG 219 (238)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHh-hCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999875689999999999986 89999999999998654
|
In fact, the yeast MDL1 (multidrug resistance-like protein 1) and MDL2 (multidrug resistance-like protein 2) transporters are also included in this CD. MDL1 is an ATP-dependent permease that acts as a high-copy suppressor of ATM1 and is thought to have a role in resistance to oxidative stress. Interestingly, subfamily B is more closely related to the carboxyl-terminal component of subfamily C than the two halves of ABCC molecules are with one another. |
| >PRK14272 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-51 Score=351.46 Aligned_cols=218 Identities=28% Similarity=0.411 Sum_probs=178.8
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-----cceEEEcCccCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPT-----SGSINIRGYNNDGEPNNSP 91 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~g~~~~~~~~~~~ 91 (245)
+|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|.++..... .
T Consensus 4 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~~~~~~~--~ 79 (252)
T PRK14272 4 LLSAQDVNIYYGD--KQAVKNVNLDVQRGTVNALIGPSGCGKTTFLRAINRMHDLTPGARVTGRILLDGQDIYGPRV--D 79 (252)
T ss_pred EEEEeeeEEEECC--EEeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCcCCCCceeEEECCEEcccCcc--C
Confidence 6999999999964 47999999999999999999999999999999999999874 8999999988743111 1
Q ss_pred CCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC---ccCCCCCCCCChHHHHH
Q 035832 92 EPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG---TSLDKDPHSLSGGYKRR 168 (245)
Q Consensus 92 ~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqr 168 (245)
...+++.++|+||++. +++..|+.||+.++.... .. .......+.+.++++.+++.. ..+++++.+||||||||
T Consensus 80 ~~~~~~~i~~~~q~~~-~~~~~t~~enl~~~~~~~-~~-~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~qr 156 (252)
T PRK14272 80 PVAMRRRVGMVFQKPN-PFPTMSVFDNVVAGLKLA-GI-RDRDHLMEVAERSLRGAALWDEVKDRLKTPATGLSGGQQQR 156 (252)
T ss_pred HHHhhceeEEEeccCc-cCcCCCHHHHHHHHHHhc-CC-CCHHHHHHHHHHHHHHcCcchhhhhhhcCCcccCCHHHHHH
Confidence 1123567999999984 666789999998652111 10 011222334556667676531 12588899999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 169 LALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 169 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
++|||||+.+|++|||||||+|||+.+++.+.+.|++++++.|||++||+++++..+||++++|++|+++..+
T Consensus 157 v~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~ 229 (252)
T PRK14272 157 LCIARALAVEPEILLMDEPTSALDPASTARIEDLMTDLKKVTTIIIVTHNMHQAARVSDTTSFFLVGDLVEHG 229 (252)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999999999876789999999999999999999999999998754
|
|
| >PRK14249 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-51 Score=350.69 Aligned_cols=218 Identities=26% Similarity=0.414 Sum_probs=179.7
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-----cceEEEcCccCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPT-----SGSINIRGYNNDGEPNNS 90 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~g~~~~~~~~~~ 90 (245)
++|+++|++++|++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++.....
T Consensus 3 ~~l~~~~l~~~~~~--~~il~~~s~~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~~-- 78 (251)
T PRK14249 3 PKIKIRGVNFFYHK--HQVLKNINMDFPERQITAIIGPSGCGKSTLLRALNRMNDIVSGARLEGAVLLDNENIYSPNL-- 78 (251)
T ss_pred ceEEEEEEEEEECC--eeEecceEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCccccCCcccEEEECCEEcccccc--
Confidence 47999999999964 46999999999999999999999999999999999999997 6999999987643111
Q ss_pred CCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC---ccCCCCCCCCChHHHH
Q 035832 91 PEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG---TSLDKDPHSLSGGYKR 167 (245)
Q Consensus 91 ~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkq 167 (245)
....+++.++|+||++. .++ .|+.||+.++.... ... ........+.++++.+++.+ ..+++++.+|||||||
T Consensus 79 ~~~~~~~~i~~v~q~~~-~~~-~tv~enl~~~~~~~-~~~-~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~q 154 (251)
T PRK14249 79 DVVNLRKRVGMVFQQPN-PFP-KSIFDNVAFGPRML-GTT-AQSRLDEVVEKSLRQAALWDEVKDNLHKSGLALSGGQQQ 154 (251)
T ss_pred ChHHhhceEEEEecCCc-cCc-CcHHHHHhhHHHhc-CCC-hhhHHHHHHHHHHHHhCCchhhhhHhhCCcccCCHHHHH
Confidence 11123567999999985 444 59999998752211 110 11222345667788888642 1258899999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 168 RLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 168 rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|++|||||+.+|++|||||||+|||+.++..+.++|+++.++.|||++||+++++..+||++++|++|+++..+
T Consensus 155 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tilivsh~~~~~~~~~d~i~~l~~G~i~~~~ 228 (251)
T PRK14249 155 RLCIARVLAIEPEVILMDEPCSALDPVSTMRIEELMQELKQNYTIAIVTHNMQQAARASDWTGFLLTGDLVEYG 228 (251)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhCCEEEEEeCCeEEEeC
Confidence 99999999999999999999999999999999999999866789999999999999999999999999997654
|
|
| >PRK14253 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-51 Score=351.19 Aligned_cols=217 Identities=26% Similarity=0.434 Sum_probs=179.6
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CcceEEEcCccCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP-----TSGSINIRGYNNDGEPNNS 90 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~~~~~~~~ 90 (245)
++|+++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++....
T Consensus 2 ~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~~~~~~--- 76 (249)
T PRK14253 2 NKFNIENLDLFYGE--NQALKSINLPIPARQVTALIGPSGCGKSTLLRCLNRMNDLIEGVKITGKLTMDGEDIYGNI--- 76 (249)
T ss_pred CeEEEeccEEEECC--eeeeecceEEecCCCEEEEECCCCCCHHHHHHHHHhhcccccCCCCceEEEECCEEccccc---
Confidence 46999999999964 5699999999999999999999999999999999999986 5999999998764211
Q ss_pred CCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC---ccCCCCCCCCChHHHH
Q 035832 91 PEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG---TSLDKDPHSLSGGYKR 167 (245)
Q Consensus 91 ~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkq 167 (245)
.....++.++|+||++. ++. .|+.+|+.++.... .. .......+.+.++++.+++.+ ...++++.+|||||||
T Consensus 77 ~~~~~~~~i~~~~q~~~-~~~-~tv~~~l~~~~~~~-~~-~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~q 152 (249)
T PRK14253 77 DVADLRIKVGMVFQKPN-PFP-MSIYENVAYGLRAQ-GI-KDKKVLDEVVERSLRGAALWDEVKDRLKSHAFGLSGGQQQ 152 (249)
T ss_pred chHHHHhheeEEecCCC-cCc-ccHHHHHHhHHHhc-CC-CchHHHHHHHHHHHHHcCCchhhhHHhhcCcccCCHHHHH
Confidence 01123567999999984 444 89999998752211 10 011223345667788888742 1257889999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 168 RLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 168 rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||+|||||+.+|++|||||||+|||+.++..++++|+++.++.|||++||+++++..+||++++|++|+++..+
T Consensus 153 rv~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~G~i~~~g 226 (249)
T PRK14253 153 RLCIARTIAMEPDVILMDEPTSALDPIATHKIEELMEELKKNYTIVIVTHSMQQARRISDRTAFFLMGELVEHD 226 (249)
T ss_pred HHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEecCHHHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999976789999999999999999999999999998754
|
|
| >PRK14275 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-51 Score=357.47 Aligned_cols=220 Identities=27% Similarity=0.424 Sum_probs=180.7
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCcceEEEcCccCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK-----PTSGSINIRGYNNDGEPN 88 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~~ 88 (245)
+.++|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++.....
T Consensus 36 ~~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~L~Gl~~~~p~~~~~G~I~~~g~~i~~~~~ 113 (286)
T PRK14275 36 GKPHVVAKNFSIYYGE--FEAVKKVNADILSKYVTAIIGPSGCGKSTFLRAINRMNDLIPSCHTTGALMFDGEDIYGKFT 113 (286)
T ss_pred CceEEEEeeeEEEECC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCCceEEEECCEEhhhccc
Confidence 4668999999999964 469999999999999999999999999999999999864 499999999987643211
Q ss_pred CCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC---ccCCCCCCCCChHH
Q 035832 89 NSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG---TSLDKDPHSLSGGY 165 (245)
Q Consensus 89 ~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGq 165 (245)
....++++++|+||++. ++. .|+.||+.++.... .. .........+.++++.+++.. ..+++++.+|||||
T Consensus 114 --~~~~~~~~i~~v~q~~~-l~~-~tv~enl~~~~~~~-~~-~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq 187 (286)
T PRK14275 114 --DEVLLRKKIGMVFQKPN-PFP-KSIFDNIAYGPRLH-GI-NDKKQLEEIVEKSLRKAALWDEVSDRLDKNALGLSGGQ 187 (286)
T ss_pred --chHHhhhcEEEECCCCC-CCc-cCHHHHHHhHHHhc-CC-CcHHHHHHHHHHHHHHhCCccchhhHhhCChhhCCHHH
Confidence 01123567999999985 444 59999998752111 10 011222345677888888731 13588999999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 166 KRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 166 kqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||||+|||||+.+|++|||||||+|||+.+++.++++|+++.++.|||++|||++++..+||++++|++|+++..+
T Consensus 188 ~qrv~LAraL~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tvIivsH~~~~~~~~~d~i~~L~~G~i~~~g 263 (286)
T PRK14275 188 QQRLCVARTLAVEPEILLLDEPTSALDPKATAKIEDLIQELRGSYTIMIVTHNMQQASRVSDYTMFFYEGVLVEHA 263 (286)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999999999999876689999999999999999999999999998654
|
|
| >PRK14271 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-51 Score=355.13 Aligned_cols=218 Identities=27% Similarity=0.413 Sum_probs=181.7
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CcceEEEcCccCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP-----TSGSINIRGYNNDGEPNN 89 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~~~~~~~ 89 (245)
.++|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++.....
T Consensus 19 ~~~l~i~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~- 95 (276)
T PRK14271 19 APAMAAVNLTLGFAG--KTVLDQVSMGFPARAVTSLMGPTGSGKTTFLRTLNRMNDKVSGYRYSGDVLLGGRSIFNYRD- 95 (276)
T ss_pred CcEEEEeeEEEEECC--EEEeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhccCCcCCCCCCceEEEECCEEccccch-
Confidence 668999999999974 5799999999999999999999999999999999999986 69999999987743211
Q ss_pred CCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCc---cCCCCCCCCChHHH
Q 035832 90 SPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGT---SLDKDPHSLSGGYK 166 (245)
Q Consensus 90 ~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqk 166 (245)
...++++++|+||++. +|+ .|+++|+.++..... .. ........+.++++.+++... .+++.+.+||||||
T Consensus 96 --~~~~~~~i~~v~q~~~-l~~-~tv~eni~~~~~~~~-~~-~~~~~~~~~~~~l~~~~l~~~~~~~l~~~~~~LSgGq~ 169 (276)
T PRK14271 96 --VLEFRRRVGMLFQRPN-PFP-MSIMDNVLAGVRAHK-LV-PRKEFRGVAQARLTEVGLWDAVKDRLSDSPFRLSGGQQ 169 (276)
T ss_pred --hHHHhhheEEeccCCc-cCC-ccHHHHHHHHHHhcc-CC-CHHHHHHHHHHHHHHcCCCchhhhHhhCCcccCCHHHH
Confidence 1123567999999984 454 899999987531111 00 112233456678888998641 24788999999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 167 RRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 167 qrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||++|||||+.+|++|||||||++||+.+++.+.+.|++++++.|||++||+++++..+||++++|++|+++..+
T Consensus 170 qrl~LAral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiiivsH~~~~~~~~~dri~~l~~G~i~~~g 244 (276)
T PRK14271 170 QLLCLARTLAVNPEVLLLDEPTSALDPTTTEKIEEFIRSLADRLTVIIVTHNLAQAARISDRAALFFDGRLVEEG 244 (276)
T ss_pred HHHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999876689999999999999999999999999998754
|
|
| >PRK10247 putative ABC transporter ATP-binding protein YbbL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-52 Score=349.86 Aligned_cols=214 Identities=31% Similarity=0.471 Sum_probs=176.8
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
..++|+++|++++|++ +++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... .
T Consensus 4 ~~~~i~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~----~ 77 (225)
T PRK10247 4 NSPLLQLQNVGYLAGD--AKILNNISFSLRAGEFKLITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDISTLKP----E 77 (225)
T ss_pred CCceEEEeccEEeeCC--ceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEcCcCCH----H
Confidence 3457999999999964 469999999999999999999999999999999999999999999999987643221 1
Q ss_pred CCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
.+++.++|+||++. ++ ..|+.||+.+..... ... ....++.++++.+++.+...++++.+|||||+|||+|||
T Consensus 78 ~~~~~i~~~~q~~~-l~-~~tv~enl~~~~~~~-~~~----~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~qrv~lar 150 (225)
T PRK10247 78 IYRQQVSYCAQTPT-LF-GDTVYDNLIFPWQIR-NQQ----PDPAIFLDDLERFALPDTILTKNIAELSGGEKQRISLIR 150 (225)
T ss_pred HHHhccEEEecccc-cc-cccHHHHHHhHHhhc-CCC----hHHHHHHHHHHHcCCChHHhcCCcccCCHHHHHHHHHHH
Confidence 13467999999974 44 469999998742111 110 112346788999999632368999999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEe-CCeEEEec
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMD-MGGFLVEQ 241 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~-~G~i~~~~ 241 (245)
||+.+|+++||||||+|||+.+++.+.++|+++.+ +.|||++||+++++. .||++++|+ ++..+.++
T Consensus 151 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvii~sh~~~~~~-~~d~i~~l~~~~~~~~~~ 220 (225)
T PRK10247 151 NLQFMPKVLLLDEITSALDESNKHNVNEIIHRYVREQNIAVLWVTHDKDEIN-HADKVITLQPHAGEMQEA 220 (225)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEECChHHHH-hCCEEEEEecccchHhhh
Confidence 99999999999999999999999999999999853 689999999999985 699999995 55555544
|
|
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-51 Score=394.72 Aligned_cols=224 Identities=25% Similarity=0.323 Sum_probs=185.8
Q ss_pred cceEEEEeEEEECCCC---------ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCC
Q 035832 15 YSCLEVRDVSYRPPGT---------QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDG 85 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~---------~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~ 85 (245)
.++|+++||++.|+.. ...+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++..
T Consensus 311 ~~~L~~~~l~~~y~~~~~~~~~~~~~~~~l~~vs~~i~~Ge~~~lvG~nGsGKSTLlk~i~Gl~~p~~G~I~~~g~~i~~ 390 (623)
T PRK10261 311 EPILQVRNLVTRFPLRSGLLNRVTREVHAVEKVSFDLWPGETLSLVGESGSGKSTTGRALLRLVESQGGEIIFNGQRIDT 390 (623)
T ss_pred CceEEEeeeEEEEcCCCccccccCCceEEEeeeEeEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCcEEEECCEECCc
Confidence 4689999999999621 2469999999999999999999999999999999999999999999999998754
Q ss_pred CCCCCCCCCCCCcEEEEecCCC-CCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChH
Q 035832 86 EPNNSPEPLPPEKVGIVFQFPE-RYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGG 164 (245)
Q Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG 164 (245)
.+.... ..++++|+|+||++. .+++.+||.+|+.++.... ... ......+++.++++.+||....+++++++||||
T Consensus 391 ~~~~~~-~~~~~~i~~v~Q~~~~~l~~~~tv~~~l~~~~~~~-~~~-~~~~~~~~~~~~L~~~gL~~~~~~~~~~~LSgG 467 (623)
T PRK10261 391 LSPGKL-QALRRDIQFIFQDPYASLDPRQTVGDSIMEPLRVH-GLL-PGKAAAARVAWLLERVGLLPEHAWRYPHEFSGG 467 (623)
T ss_pred CCHHHH-HHhcCCeEEEecCchhhcCCCCCHHHHHHHHHHHc-CCC-CHHHHHHHHHHHHHHcCCCHHHhhCCcccCCHH
Confidence 321100 112467999999973 3566789999998752111 100 122234567889999999632369999999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 165 YKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 165 qkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|||||+|||||+.+|++|||||||++||+.++.+++++|+++++ +.|||+||||++++..+||||++|++|+++..+
T Consensus 468 qrQRv~iAraL~~~p~llllDEPts~LD~~~~~~i~~ll~~l~~~~g~tvi~isHdl~~v~~~~dri~vl~~G~iv~~g 546 (623)
T PRK10261 468 QRQRICIARALALNPKVIIADEAVSALDVSIRGQIINLLLDLQRDFGIAYLFISHDMAVVERISHRVAVMYLGQIVEIG 546 (623)
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEec
Confidence 99999999999999999999999999999999999999999863 589999999999999999999999999998654
|
|
| >cd03299 ABC_ModC_like Archeal protein closely related to ModC | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-51 Score=347.85 Aligned_cols=210 Identities=30% Similarity=0.458 Sum_probs=180.5
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|++++|++ ++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.... ..++
T Consensus 1 l~~~~l~~~~~~---~~l~~is~~i~~Ge~~~i~G~nG~GKStLl~~l~G~~~p~~G~v~i~g~~~~~~~------~~~~ 71 (235)
T cd03299 1 LKVENLSKDWKE---FKLKNVSLEVERGDYFVILGPTGSGKSVLLETIAGFIKPDSGKILLNGKDITNLP------PEKR 71 (235)
T ss_pred CeeEeEEEEeCC---ceeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCcCCCceEEEECCEEcCcCC------hhHc
Confidence 478999999964 3799999999999999999999999999999999999999999999998875321 1246
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ 177 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~ 177 (245)
.++|+||++. +++..|+.||+.++...... ......+.+.++++.+++.+. +++++.+||||||||++||||++.
T Consensus 72 ~i~~~~q~~~-~~~~~t~~e~l~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrl~laral~~ 146 (235)
T cd03299 72 DISYVPQNYA-LFPHMTVYKNIAYGLKKRKV---DKKEIERKVLEIAEMLGIDHL-LNRKPETLSGGEQQRVAIARALVV 146 (235)
T ss_pred CEEEEeecCc-cCCCccHHHHHHHHHHHcCC---CHHHHHHHHHHHHHHcCChhH-HhcCcccCCHHHHHHHHHHHHHHc
Confidence 7999999974 56678999999875321110 112234456788999999875 799999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+|++++|||||+|||+.+++.+++.|+++.. +.|||++||+++++..+||++++|++|+++..+
T Consensus 147 ~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~~~tili~tH~~~~~~~~~d~i~~l~~G~i~~~~ 212 (235)
T cd03299 147 NPKILLLDEPFSALDVRTKEKLREELKKIRKEFGVTVLHVTHDFEEAWALADKVAIMLNGKLIQVG 212 (235)
T ss_pred CCCEEEECCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEECCEEEEec
Confidence 9999999999999999999999999999853 689999999999999999999999999998653
|
ModC is an ABC-type transporter and the ATPase component of a molybdate transport system that also includes the periplasmic binding protein ModA and the membrane protein ModB. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10419 nikE nickel transporter ATP-binding protein NikE; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-51 Score=355.81 Aligned_cols=223 Identities=30% Similarity=0.389 Sum_probs=182.5
Q ss_pred ceEEEEeEEEECCC-------CccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCC
Q 035832 16 SCLEVRDVSYRPPG-------TQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPN 88 (245)
Q Consensus 16 ~~l~~~~l~~~y~~-------~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~ 88 (245)
++|+++||++.|+. ..+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....
T Consensus 2 ~~l~~~nl~~~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~sG~i~~~g~~~~~~~~ 81 (268)
T PRK10419 2 TLLNVSGLSHHYAHGGLSGKHQHQTVLNNVSLSLKSGETVALLGRSGCGKSTLARLLVGLESPSQGNVSWRGEPLAKLNR 81 (268)
T ss_pred ceEEEeceEEEecCCccccccCceeeEeceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccCh
Confidence 47999999999963 12579999999999999999999999999999999999999999999999987643211
Q ss_pred CCCCCCCCCcEEEEecCCCC-CCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHH
Q 035832 89 NSPEPLPPEKVGIVFQFPER-YFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKR 167 (245)
Q Consensus 89 ~~~~~~~~~~i~~v~Q~~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkq 167 (245)
.. ....++.++|+||++.. +++..|+.+|+.+....... . ........+.++++.+++.....++++.+|||||||
T Consensus 82 ~~-~~~~~~~i~~v~q~~~~~~~~~~t~~~~l~~~~~~~~~-~-~~~~~~~~~~~~l~~~gl~~~~~~~~~~~LS~Ge~q 158 (268)
T PRK10419 82 AQ-RKAFRRDIQMVFQDSISAVNPRKTVREIIREPLRHLLS-L-DKAERLARASEMLRAVDLDDSVLDKRPPQLSGGQLQ 158 (268)
T ss_pred hH-HHHHHhcEEEEEcChhhccCCCCCHHHHHHHHHHhhcc-C-CHHHHHHHHHHHHHHcCCChhHhhCCCccCChHHHH
Confidence 10 01124679999999742 34567999998653111000 0 112233467889999999632368999999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 168 RLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 168 rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|++|||||+.+|++|||||||+|||+.+++.+.++|+++.+ +.|+|++||+++++..+||++++|++|+++..+
T Consensus 159 rl~laral~~~p~lllLDEPt~~LD~~~~~~~~~~l~~~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g 234 (268)
T PRK10419 159 RVCLARALAVEPKLLILDEAVSNLDLVLQAGVIRLLKKLQQQFGTACLFITHDLRLVERFCQRVMVMDNGQIVETQ 234 (268)
T ss_pred HHHHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHHcCcEEEEEECCHHHHHHhCCEEEEEECCEEeeeC
Confidence 99999999999999999999999999999999999999864 689999999999999999999999999998654
|
|
| >PRK14238 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-51 Score=354.96 Aligned_cols=219 Identities=25% Similarity=0.363 Sum_probs=179.1
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCcceEEEcCccCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK-----PTSGSINIRGYNNDGEPN 88 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~~ 88 (245)
..++|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++ |++|+|.++|+++.....
T Consensus 21 ~~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~I~G~nGsGKSTLl~~i~Gl~~~~~~~~~~G~i~~~g~~~~~~~~ 98 (271)
T PRK14238 21 KKVVFDTQNLNLWYGE--DHALKNINLDIHENEVTAIIGPSGCGKSTYIKTLNRMVELVPSVKTTGKILYRDQNIFDKSY 98 (271)
T ss_pred CceEEEEeeeEEEECC--cceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhccCCCCCCCceeEEECCEEcccccc
Confidence 3558999999999964 469999999999999999999999999999999999997 699999999988743111
Q ss_pred CCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCC----CCccCCCCCCCCChH
Q 035832 89 NSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGL----DGTSLDKDPHSLSGG 164 (245)
Q Consensus 89 ~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l----~~~~~~~~~~~LSgG 164 (245)
....+++.++|+||++. ++. .|+.+|+.++....... ........+.++++.+++ .+. +++++.+||||
T Consensus 99 --~~~~~~~~i~~v~q~~~-~~~-~tv~eni~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~l~~~-~~~~~~~LSgG 171 (271)
T PRK14238 99 --SVEELRTNVGMVFQKPN-PFP-KSIYDNVTYGPKIHGIK--DKKTLDEIVEKSLRGAAIWDELKDR-LHDNAYGLSGG 171 (271)
T ss_pred --cHHHHhhhEEEEecCCc-ccc-ccHHHHHHHHHHhcCCC--cHHHHHHHHHHHHHHcCCcchHHHH-HhcCcccCCHH
Confidence 11123567999999984 444 69999998752111100 111223345666776643 333 58899999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 165 YKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 165 qkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||||++|||||+.+|++|||||||+|||+.++..+.++|+++.++.|||++|||++++..+||++++|++|+++..+
T Consensus 172 e~qrv~laraL~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiiivsH~~~~i~~~~d~i~~l~~G~i~~~g 248 (271)
T PRK14238 172 QQQRLCIARCLAIEPDVILMDEPTSALDPISTLKVEELVQELKKDYSIIIVTHNMQQAARISDKTAFFLNGYVNEYD 248 (271)
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHcCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999976789999999999999999999999999998654
|
|
| >cd03254 ABCC_Glucan_exporter_like Glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-51 Score=347.47 Aligned_cols=214 Identities=25% Similarity=0.390 Sum_probs=172.9
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|++++|++ .+.+++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+++
T Consensus 3 l~~~~l~~~~~~-~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~----~~~~~ 77 (229)
T cd03254 3 IEFENVNFSYDE-KKPVLKDINFSIKPGETVAIVGPTGAGKTTLINLLMRFYDPQKGQILIDGIDIRDISR----KSLRS 77 (229)
T ss_pred EEEEEEEEecCC-CCccccceEEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEeHHHcCH----HHHhh
Confidence 789999999964 2358999999999999999999999999999999999999999999999987643211 12346
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHH-HHHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEY-LALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
.++|+||++. ++ ..|+.||+.+..... ........ ....+.++++.+ ++... .++++.+|||||||||+||||
T Consensus 78 ~i~~~~q~~~-~~-~~tv~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~LS~G~~~rv~la~a 153 (229)
T cd03254 78 MIGVVLQDTF-LF-SGTIMENIRLGRPNA-TDEEVIEAAKEAGAHDFIMKLPNGYDTV-LGENGGNLSQGERQLLAIARA 153 (229)
T ss_pred hEEEecCCch-hh-hhHHHHHHhccCCCC-CHHHHHHHHHHhChHHHHHhCcccccCH-hhcCCCcCCHHHHHHHHHHHH
Confidence 7999999984 44 459999998753211 10000110 011234455554 56554 577899999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|+.+|+++||||||+|||+.+++.+++.|.++.++.|||++||+++++. .||++++|++|+++..+
T Consensus 154 l~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~~d~i~~l~~g~~~~~~ 219 (229)
T cd03254 154 MLRDPKILILDEATSNIDTETEKLIQEALEKLMKGRTSIIIAHRLSTIK-NADKILVLDDGKIIEEG 219 (229)
T ss_pred HhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHh-hCCEEEEEeCCeEEEeC
Confidence 9999999999999999999999999999999876789999999999986 59999999999998653
|
In A. tumefaciens cyclic beta-1, 2-glucan must be transported into the periplasmic space to exert its action as a virluence factor. This subfamily belongs to the MRP-like family and is involved in drug, peptide, and lipid export. The MRP-like family, similar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains each composed of six transmembrane (TM) helices and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR00968 3a0106s01 sulfate ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.9e-51 Score=347.17 Aligned_cols=211 Identities=33% Similarity=0.515 Sum_probs=181.2
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|++++|++ +++|+|+||++.+||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ..++
T Consensus 1 i~i~~l~~~~~~--~~il~~is~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~i~g~~~~~~~------~~~~ 72 (237)
T TIGR00968 1 IEIANISKRFGS--FQALDDVNLEVPTGSLVALLGPSGSGKSTLLRIIAGLEQPDSGRIRLNGQDATRVH------ARDR 72 (237)
T ss_pred CEEEEEEEEECC--eeeeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEEcCcCC------hhhc
Confidence 478999999974 46999999999999999999999999999999999999999999999998874321 1246
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ 177 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~ 177 (245)
.++|+||++. +++..|+.||+.+..... .. ......+.+.++++.+++.+. .++.+.+||+||+||++|||||+.
T Consensus 73 ~i~~~~q~~~-~~~~~t~~enl~~~~~~~-~~--~~~~~~~~~~~~l~~~~l~~~-~~~~~~~lS~G~~qrl~laral~~ 147 (237)
T TIGR00968 73 KIGFVFQHYA-LFKHLTVRDNIAFGLEIR-KH--PKAKIKARVEELLELVQLEGL-GDRYPNQLSGGQRQRVALARALAV 147 (237)
T ss_pred CEEEEecChh-hccCCcHHHHHHhHHHhc-CC--CHHHHHHHHHHHHHHcCCHhH-hhCChhhCCHHHHHHHHHHHHHhc
Confidence 7999999984 566789999998753211 11 112223456889999999865 699999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+|+++||||||+|||+.+++.++++|.++.+ +.|||++||+++++.++||++++|++|+++..+
T Consensus 148 ~p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tvli~sH~~~~~~~~~d~i~~l~~g~i~~~~ 213 (237)
T TIGR00968 148 EPQVLLLDEPFGALDAKVRKELRSWLRKLHDEVHVTTVFVTHDQEEAMEVADRIVVMSNGKIEQIG 213 (237)
T ss_pred CCCEEEEcCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHhhcCEEEEEECCEEEEec
Confidence 9999999999999999999999999999864 589999999999999999999999999998654
|
|
| >TIGR02982 heterocyst_DevA ABC exporter ATP-binding subunit, DevA family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-51 Score=346.33 Aligned_cols=214 Identities=30% Similarity=0.420 Sum_probs=178.5
Q ss_pred EEEEeEEEECCCC--ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGT--QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 18 l~~~~l~~~y~~~--~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
|+++|+++.|+++ .+.+|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+... ....
T Consensus 2 l~~~~l~~~~~~~~~~~~il~~vs~~i~~G~~~~I~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~-~~~~ 80 (220)
T TIGR02982 2 ISIRNLNHYYGHGSLRKQVLFDINLEINPGEIVILTGPSGSGKTTLLTLIGGLRSVQEGSLKVLGQELYGASEKE-LVQL 80 (220)
T ss_pred EEEEEEEEEccCCCcceeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEhHhcCHhH-HHHH
Confidence 7899999999642 156999999999999999999999999999999999999999999999998774322100 0112
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
++.++|+||++. +++..|+.+|+.++....... ........+.++++.+|+.+. .++++.+||+|||||++|||||
T Consensus 81 ~~~i~~~~q~~~-~~~~~t~~~n~~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~-~~~~~~~lS~G~~qrv~laral 156 (220)
T TIGR02982 81 RRNIGYIFQAHN-LLGFLTARQNVQMALELQPNL--SYQEARERARAMLEAVGLGDH-LDYYPHNLSGGQKQRVAIARAL 156 (220)
T ss_pred HhheEEEcCChh-hcCCCCHHHHHHHHHHhccCC--CHHHHHHHHHHHHHHcCChhh-hhcChhhCCHHHHHHHHHHHHH
Confidence 467999999985 566689999998752211110 122334567889999999865 6999999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeE
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGF 237 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i 237 (245)
+.+|+++||||||+|||+.+++.+.++|+++.+ +.|||++||+++. .++||++++|++|++
T Consensus 157 ~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~~tii~~sh~~~~-~~~~d~v~~l~~g~~ 219 (220)
T TIGR02982 157 VHRPKLVLADEPTAALDSKSGRDVVELMQKLAREQGCTILIVTHDNRI-LDVADRIVHMEDGKL 219 (220)
T ss_pred hcCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHHcCCEEEEEeCCHHH-HhhCCEEEEEECCEE
Confidence 999999999999999999999999999999864 5899999999985 579999999999986
|
Members of this protein family are found mostly in the Cyanobacteria, but also in the Planctomycetes. Cyanobacterial examples are involved in heterocyst formation, by which some fraction of members of the colony undergo a developmental change and become capable of nitrogen fixation. The DevBCA proteins are thought export of either heterocyst-specific glycolipids or an enzyme essential for formation of the laminated layer found in heterocysts. |
| >PRK15056 manganese/iron transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-51 Score=354.10 Aligned_cols=218 Identities=29% Similarity=0.377 Sum_probs=177.6
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
...+|+++|++++|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...
T Consensus 3 ~~~~l~~~~l~~~~~~~-~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~------- 74 (272)
T PRK15056 3 QQAGIVVNDVTVTWRNG-HTALRDASFTVPGGSIAALVGVNGSGKSTLFKALMGFVRLASGKISILGQPTRQA------- 74 (272)
T ss_pred hhceEEEEeEEEEecCC-cEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEhHHh-------
Confidence 34579999999999632 4699999999999999999999999999999999999999999999999876321
Q ss_pred CCCCcEEEEecCCCCCC-CcccHHHHHHhcCCCCCCc-hhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHH
Q 035832 94 LPPEKVGIVFQFPERYF-VADNVLDEVIFGWPRQSGS-IQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLAL 171 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~-~~~tv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~i 171 (245)
..++.++|+||++...+ ...++.+++.++....... ..........+.++++.+|+.+. .++++.+||||||||++|
T Consensus 75 ~~~~~i~~v~q~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~~LSgG~~qrv~l 153 (272)
T PRK15056 75 LQKNLVAYVPQSEEVDWSFPVLVEDVVMMGRYGHMGWLRRAKKRDRQIVTAALARVDMVEF-RHRQIGELSGGQKKRVFL 153 (272)
T ss_pred hccceEEEeccccccccCCCcchhhheecccccccccccCCCHHHHHHHHHHHHHcCChhH-hcCCcccCCHHHHHHHHH
Confidence 12346999999974211 2346788876542110000 00011223456788999999875 699999999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 172 AIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 172 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||||+.+|++|||||||+|||+.+++.+.++|+++++ +.|||++|||++++..+||+++++ +|+++..+
T Consensus 154 araL~~~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~g~tviivsH~~~~~~~~~d~v~~~-~G~i~~~g 223 (272)
T PRK15056 154 ARAIAQQGQVILLDEPFTGVDVKTEARIISLLRELRDEGKTMLVSTHNLGSVTEFCDYTVMV-KGTVLASG 223 (272)
T ss_pred HHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeec
Confidence 9999999999999999999999999999999999864 689999999999999999999877 79987654
|
|
| >TIGR03608 L_ocin_972_ABC putative bacteriocin export ABC transporter, lactococcin 972 group | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-51 Score=344.10 Aligned_cols=205 Identities=28% Similarity=0.399 Sum_probs=170.1
Q ss_pred EEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcE
Q 035832 20 VRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKV 99 (245)
Q Consensus 20 ~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i 99 (245)
++|+++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...........+++.+
T Consensus 1 i~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~i 78 (206)
T TIGR03608 1 LKNISKKFGD--KIILDDLNLTIEKGKMYAIIGESGSGKSTLLNIIGLLEKFDSGQVYLNGKETPPLNSKKASKFRREKL 78 (206)
T ss_pred CcceEEEECC--EEEEeceEEEEeCCcEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEccccchhhHHHHHHhCe
Confidence 4789999964 46999999999999999999999999999999999999999999999998864221100011124679
Q ss_pred EEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCC
Q 035832 100 GIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVP 179 (245)
Q Consensus 100 ~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p 179 (245)
+|+||++. +++..|+.||+.++.... .. ......+++.++++.+++++. .++++.+||||||||++|||||+.+|
T Consensus 79 ~~~~q~~~-~~~~~t~~e~~~~~~~~~-~~--~~~~~~~~~~~~l~~~~l~~~-~~~~~~~lS~G~~qr~~laral~~~p 153 (206)
T TIGR03608 79 GYLFQNFA-LIENETVEENLDLGLKYK-KL--SKKEKREKKKEALEKVGLNLK-LKQKIYELSGGEQQRVALARAILKDP 153 (206)
T ss_pred eEEecchh-hccCCcHHHHHHHHHHhc-CC--CHHHHHHHHHHHHHHcCchhh-hcCChhhCCHHHHHHHHHHHHHHcCC
Confidence 99999984 566789999998752111 11 112334567889999999875 69999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEE
Q 035832 180 DLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRM 232 (245)
Q Consensus 180 ~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l 232 (245)
++|||||||+|||+.+++.+.++|+++.+ +.|||++||+++.+ .+||++++|
T Consensus 154 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~-~~~d~i~~l 206 (206)
T TIGR03608 154 PLILADEPTGSLDPKNRDEVLDLLLELNDEGKTIIIVTHDPEVA-KQADRVIEL 206 (206)
T ss_pred CEEEEeCCcCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-hhcCEEEeC
Confidence 99999999999999999999999999864 68999999999976 589999875
|
A gene pair with a fairly wide distribution consists of a polypeptide related to the lactococcin 972 (see TIGR01653) and multiple-membrane-spanning putative immunity protein (see TIGR01654). This model represents a small clade within the ABC transporters that regularly are found adjacent to these bacteriocin system gene pairs and are likely serve as export proteins. |
| >PRK14261 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-50 Score=348.56 Aligned_cols=219 Identities=27% Similarity=0.413 Sum_probs=179.6
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CcceEEEcCccCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP-----TSGSINIRGYNNDGEPNN 89 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~~~~~~~ 89 (245)
.++|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+.+| ++|+|.++|+++...+..
T Consensus 4 ~~~i~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~~ 81 (253)
T PRK14261 4 EIILSTKNLNLWYGE--KHALYDITISIPKNRVTALIGPSGCGKSTLLRCFNRMNDLIPGCRITGDILYNGENIMDSGAD 81 (253)
T ss_pred cceEEEeeeEEEECC--eeeeeeeEEEECCCcEEEEECCCCCCHHHHHHHHhccccCCCCCCcceEEEECCEEccccccc
Confidence 457999999999964 4699999999999999999999999999999999999763 489999999987532110
Q ss_pred CCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC---ccCCCCCCCCChHHH
Q 035832 90 SPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG---TSLDKDPHSLSGGYK 166 (245)
Q Consensus 90 ~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqk 166 (245)
....++.++|+||++. +++ .|++||+.++.... ... .....+..+.++++.+++.+ ...++++.+||||||
T Consensus 82 --~~~~~~~i~~~~q~~~-~~~-~tv~eni~~~~~~~-~~~-~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~ 155 (253)
T PRK14261 82 --VVALRRKIGMVFQRPN-PFP-KSIYENVAYGPRIH-GEK-NKKTLDTIVEKSLKGAALWDEVKDRLHDSALSLSGGQQ 155 (253)
T ss_pred --hhhhhceEEEEecCCc-cCc-ccHHHHHHhhHHhc-CCC-CHHHHHHHHHHHHHHhcCchhhHHHhhcChhhCCHHHH
Confidence 1123567999999984 444 59999998752211 100 11222345677788888742 125789999999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 167 RRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 167 qrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||++|||||+.+|+++||||||+|||+.+++.+.++|++++++.|||++||+++++..+||++++|++|+++..+
T Consensus 156 qrv~laral~~~p~lllLDEP~~gLD~~~~~~l~~~l~~~~~~~tvii~sh~~~~~~~~~d~v~~l~~G~i~~~g 230 (253)
T PRK14261 156 QRLCIARTLAVNPEVILMDEPCSALDPIATAKIEDLIEDLKKEYTVIIVTHNMQQAARVSDYTGFMYLGKLIEFD 230 (253)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhhCceEEEEEcCHHHHHhhCCEEEEEECCEEEEcC
Confidence 999999999999999999999999999999999999999876789999999999999999999999999998653
|
|
| >PRK14244 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.5e-51 Score=349.57 Aligned_cols=218 Identities=28% Similarity=0.427 Sum_probs=178.2
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCcceEEEcCccCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK-----PTSGSINIRGYNNDGEPNNSP 91 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~~~~~ 91 (245)
.-+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|+++|+++...+..
T Consensus 5 ~~~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~I~G~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~~~~-- 80 (251)
T PRK14244 5 HASVKNLNLWYGS--KQILFDINLDIYKREVTAFIGPSGCGKSTFLRCFNRMNDFVPNCKVKGELDIDGIDVYSVDTN-- 80 (251)
T ss_pred EEEeeeEEEEECC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcccCCCCCcceEEEECCEehHhcccc--
Confidence 3578999999964 479999999999999999999999999999999999986 4799999999876432110
Q ss_pred CCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCc---cCCCCCCCCChHHHHH
Q 035832 92 EPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGT---SLDKDPHSLSGGYKRR 168 (245)
Q Consensus 92 ~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkqr 168 (245)
....++.++|+||++. +++ .|+.+|+.++.... ............+.++++.+++.+. .+++.+.+||||||||
T Consensus 81 ~~~~~~~i~~v~q~~~-~~~-~tv~~ni~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~qr 157 (251)
T PRK14244 81 VVLLRAKVGMVFQKPN-PFP-KSIYDNVAYGPKLH-GLAKNKKKLDEIVEKSLTSVGLWEELGDRLKDSAFELSGGQQQR 157 (251)
T ss_pred hHHHhhhEEEEecCcc-ccc-CCHHHHHHHHHHhc-CCCCCHHHHHHHHHHHHHHcCCCchhhhHhhcChhhCCHHHHHH
Confidence 1123567999999984 454 59999998752111 1000111233456788999998641 2478899999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 169 LALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 169 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
++|||||+.+|++|||||||+|||+.+++.+.+.|+++.++.|||++|||++++..+||++++|++|+++..+
T Consensus 158 v~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiiiisH~~~~~~~~~d~i~~l~~G~i~~~~ 230 (251)
T PRK14244 158 LCIARAIAVKPTMLLMDEPCSALDPVATNVIENLIQELKKNFTIIVVTHSMKQAKKVSDRVAFFQSGRIVEYN 230 (251)
T ss_pred HHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhcCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999999999876799999999999999999999999999998653
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-51 Score=386.99 Aligned_cols=226 Identities=24% Similarity=0.359 Sum_probs=183.0
Q ss_pred CcceEEEEeEEEECCCC--ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CcceEEEcCccCCCC
Q 035832 14 DYSCLEVRDVSYRPPGT--QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP-----TSGSINIRGYNNDGE 86 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~--~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~~~~ 86 (245)
+.+||+++|++++|+++ .+++|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|+++...
T Consensus 2 ~~~~l~~~~l~~~~~~~~~~~~~l~~isl~i~~Ge~~~iiG~nGsGKSTLl~~i~G~~~~~~~~~~~G~i~~~g~~i~~~ 81 (529)
T PRK15134 2 TQPLLAIENLSVAFRQQQTVRTVVNDVSLQIEAGETLALVGESGSGKSVTALSILRLLPSPPVVYPSGDIRFHGESLLHA 81 (529)
T ss_pred CCceEEEeceEEEecCCCCceeeeeceEEEEeCCCEEEEECCCCCcHHHHHHHHhcCCCCCcCCccceEEEECCEecccC
Confidence 34589999999999631 24699999999999999999999999999999999999987 799999999987432
Q ss_pred CCCCCCCCCCCcEEEEecCCCC-CCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCc--cCCCCCCCCCh
Q 035832 87 PNNSPEPLPPEKVGIVFQFPER-YFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGT--SLDKDPHSLSG 163 (245)
Q Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~~LSg 163 (245)
........+++++||+||++.. +++..++.+|+.+........ .......++.++++.+|+.+. .+++++.+|||
T Consensus 82 ~~~~~~~~~~~~ig~v~Q~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~l~~~gl~~~~~~~~~~~~~LSg 159 (529)
T PRK15134 82 SEQTLRGVRGNKIAMIFQEPMVSLNPLHTLEKQLYEVLSLHRGM--RREAARGEILNCLDRVGIRQAAKRLTDYPHQLSG 159 (529)
T ss_pred CHHHHHHHhcCceEEEecCchhhcCchhhHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHCCCCChHHHHhhCCcccCH
Confidence 2110001123579999999742 344578999887531110011 122334567889999999752 24889999999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-c-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 164 GYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLK-K-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 164 Gqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||||||+|||||+.+|++|||||||++||+.+++.++++|++++ + +.|||+||||++++..+|||+++|++|+++..+
T Consensus 160 Ge~qrv~iAraL~~~p~llllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~dri~~l~~G~i~~~g 239 (529)
T PRK15134 160 GERQRVMIAMALLTRPELLIADEPTTALDVSVQAQILQLLRELQQELNMGLLFITHNLSIVRKLADRVAVMQNGRCVEQN 239 (529)
T ss_pred HHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHhcCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999985 3 589999999999999999999999999998654
|
|
| >PRK14265 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-50 Score=352.30 Aligned_cols=219 Identities=26% Similarity=0.375 Sum_probs=178.9
Q ss_pred CCcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CcceEEEcCccCCCCC
Q 035832 13 CDYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP-----TSGSINIRGYNNDGEP 87 (245)
Q Consensus 13 ~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~~~~~ 87 (245)
.+.++|+++|++++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++....
T Consensus 16 ~~~~~l~~~nl~~~~~~--~~~l~~vs~~i~~Ge~~~IiG~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~l~~~~ 93 (274)
T PRK14265 16 PDHSVFEVEGVKVFYGG--FLALVDVHLKIPAKKIIAFIGPSGCGKSTLLRCFNRMNDLIPGAKVEGRLLYRDRNIYDSQ 93 (274)
T ss_pred CCCceEEEeeEEEEeCC--eEEEeeeeeEEcCCCEEEEECCCCCCHHHHHHHHhcccccccCCCcCceEEECCEeccccc
Confidence 45668999999999974 4699999999999999999999999999999999999863 6999999998874311
Q ss_pred CCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC---ccCCCCCCCCChH
Q 035832 88 NNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG---TSLDKDPHSLSGG 164 (245)
Q Consensus 88 ~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgG 164 (245)
. ....++++++|+||++. ++. .|+.+|+.++.... .. .......+.++++.+++.. ..+++++.+||||
T Consensus 94 ~--~~~~~~~~i~~v~q~~~-l~~-~tv~~nl~~~~~~~-~~---~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgG 165 (274)
T PRK14265 94 I--NSVKLRRQVGMVFQRPN-PFP-KSIYENIAFAPRAN-GY---KGNLDELVEDSLRRAAIWEEVKDKLKEKGTALSGG 165 (274)
T ss_pred c--hhHHHhhcEEEEccCCc-ccc-ccHHHHHHhHHHhc-Cc---hHHHHHHHHHHHHHcccchhhHHHhcCCcccCCHH
Confidence 1 11123568999999984 444 59999998752111 11 1112234566777777631 1257899999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEe---------CC
Q 035832 165 YKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMD---------MG 235 (245)
Q Consensus 165 qkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~---------~G 235 (245)
|||||+|||||+.+|++|||||||+|||+.+++.+.++|.+++++.|||++|||++++..+||++++|+ +|
T Consensus 166 q~qrv~LAraL~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~~~~~~~~~~G 245 (274)
T PRK14265 166 QQQRLCIARAIAMKPDVLLMDEPCSALDPISTRQVEELCLELKEQYTIIMVTHNMQQASRVADWTAFFNTEIDEYGKRRG 245 (274)
T ss_pred HHHHHHHHHHHhhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEecccccccccCc
Confidence 999999999999999999999999999999999999999999767899999999999999999999997 79
Q ss_pred eEEEec
Q 035832 236 GFLVEQ 241 (245)
Q Consensus 236 ~i~~~~ 241 (245)
+++..+
T Consensus 246 ~~~~~g 251 (274)
T PRK14265 246 KLVEFS 251 (274)
T ss_pred eEEEeC
Confidence 988654
|
|
| >PRK14257 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-50 Score=360.75 Aligned_cols=222 Identities=26% Similarity=0.423 Sum_probs=182.1
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCcceEEEcCccCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK-----PTSGSINIRGYNNDGEPNN 89 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~~~ 89 (245)
..+|+++|++++|.++..++|+|+||+|++||++||+||||||||||+++|+|+.+ |++|+|.++|+++.....
T Consensus 78 ~~~i~~~nls~~y~~~~~~~L~~is~~I~~Ge~v~IvG~~GsGKSTLl~~L~g~~~~~~~~p~~G~I~idG~~i~~~~~- 156 (329)
T PRK14257 78 ANVFEIRNFNFWYMNRTKHVLHDLNLDIKRNKVTAFIGPSGCGKSTFLRNLNQLNDLIEGTSHEGEIYFLGTNTRSKKI- 156 (329)
T ss_pred CceEEEEeeEEEecCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc-
Confidence 34799999999996434569999999999999999999999999999999999986 579999999998853211
Q ss_pred CCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC---ccCCCCCCCCChHHH
Q 035832 90 SPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG---TSLDKDPHSLSGGYK 166 (245)
Q Consensus 90 ~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqk 166 (245)
....+++.++|+||+|. .| ..|+++|+.|+.... . ..........+.++++.+++.+ ...++++.+||||||
T Consensus 157 -~~~~lr~~i~~v~q~~~-~~-~~ti~eNi~~~~~~~-~-~~~~~~~~~~~~~~l~~~~L~~~l~~~~~~~~~~LSgGqk 231 (329)
T PRK14257 157 -SSLELRTRIGMVFQKPT-PF-EMSIFDNVAYGPRNN-G-INDRKILEKIVEKSLKSAALWDEVKDDLDKAGNALSGGQQ 231 (329)
T ss_pred -chHhhhccEEEEecCCc-cC-CCcHHHHHHhHHHhc-C-CChHHHHHHHHHHHHHHcCCcchhhhhhhCCcccCCHHHH
Confidence 11123568999999985 44 689999999762111 1 1111222334567788887732 125789999999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 167 RRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 167 qrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
||++|||||+.+|+||||||||++||+.+...+.+.|+++.+++|||++||+++.+..+||||++|++|+++..+.
T Consensus 232 qRl~LARAl~~~p~IlLLDEPts~LD~~~~~~i~~~i~~l~~~~Tii~iTH~l~~i~~~~Driivl~~G~i~e~g~ 307 (329)
T PRK14257 232 QRLCIARAIALEPEVLLMDEPTSALDPIATAKIEELILELKKKYSIIIVTHSMAQAQRISDETVFFYQGWIEEAGE 307 (329)
T ss_pred HHHHHHHHHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeCC
Confidence 9999999999999999999999999999999999999998777999999999999999999999999999987543
|
|
| >PRK14236 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-50 Score=352.10 Aligned_cols=219 Identities=28% Similarity=0.442 Sum_probs=180.9
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCcceEEEcCccCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK-----PTSGSINIRGYNNDGEPNN 89 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~~~ 89 (245)
.++|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.....
T Consensus 23 ~~~l~~~nl~~~~~~--~~il~~vs~~i~~Ge~~~I~G~nGsGKSTLl~~laGl~~~~~~~~~~G~i~i~g~~i~~~~~- 99 (272)
T PRK14236 23 QTALEVRNLNLFYGD--KQALFDISMRIPKNRVTAFIGPSGCGKSTLLRCFNRMNDLVDNCRIEGEIRLDGQNIYDKKV- 99 (272)
T ss_pred CcEEEEEEEEEEECC--eeEeeeEEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCccCCCCceEEEECCEECccccc-
Confidence 447999999999964 469999999999999999999999999999999999987 489999999988743111
Q ss_pred CCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC---ccCCCCCCCCChHHH
Q 035832 90 SPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG---TSLDKDPHSLSGGYK 166 (245)
Q Consensus 90 ~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqk 166 (245)
.....++.++|+||++. +++ .|+.||+.++.... .. .......+.+.++++.+++.+ ..+++.+.+||||||
T Consensus 100 -~~~~~~~~i~~v~q~~~-l~~-~tv~enl~~~~~~~-~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LS~Gq~ 174 (272)
T PRK14236 100 -DVAELRRRVGMVFQRPN-PFP-KSIYENVVYGLRLQ-GI-NNRRVLDEAVERSLRGAALWDEVKDRLHENAFGLSGGQQ 174 (272)
T ss_pred -CHHHHhccEEEEecCCc-cCc-ccHHHHHHHHHHhc-CC-CcHHHHHHHHHHHHHHcCCChhHHHHhhCCcccCCHHHH
Confidence 11123568999999984 455 49999998752111 10 011222345677888888853 125788999999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 167 RRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 167 qrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||++|||||+.+|+++||||||+|||+.++..++++|++++++.|||++||+++++..+||++++|++|+++..+
T Consensus 175 qrv~laral~~~p~lllLDEPt~gLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~~~~~~d~i~~l~~G~i~~~g 249 (272)
T PRK14236 175 QRLVIARAIAIEPEVLLLDEPTSALDPISTLKIEELITELKSKYTIVIVTHNMQQAARVSDYTAFMYMGKLVEYG 249 (272)
T ss_pred HHHHHHHHHHCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCeEEEEeCCHHHHHhhCCEEEEEECCEEEecC
Confidence 999999999999999999999999999999999999999976789999999999999999999999999997654
|
|
| >CHL00131 ycf16 sulfate ABC transporter protein; Validated | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-50 Score=347.00 Aligned_cols=223 Identities=22% Similarity=0.289 Sum_probs=181.2
Q ss_pred CCcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCC--CCCCcceEEEcCccCCCCCCCC
Q 035832 13 CDYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGL--SKPTSGSINIRGYNNDGEPNNS 90 (245)
Q Consensus 13 ~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~~~~ 90 (245)
+..++|+++|+++.|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+ ++|++|+|+++|.++......
T Consensus 3 ~~~~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~Gl~~~~~~~G~i~~~g~~~~~~~~~- 79 (252)
T CHL00131 3 KNKPILEIKNLHASVNE--NEILKGLNLSINKGEIHAIMGPNGSGKSTLSKVIAGHPAYKILEGDILFKGESILDLEPE- 79 (252)
T ss_pred CCCceEEEEeEEEEeCC--EEeeecceeEEcCCcEEEEECCCCCCHHHHHHHHcCCCcCcCCCceEEECCEEcccCChh-
Confidence 44568999999999964 4699999999999999999999999999999999998 579999999999887543211
Q ss_pred CCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCC---Cch-hHHHHHHHHHHHHHHHcCCCCccCCCCCC-CCChHH
Q 035832 91 PEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQS---GSI-QLKEYLALNLQRAINWVGLDGTSLDKDPH-SLSGGY 165 (245)
Q Consensus 91 ~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~---~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~LSgGq 165 (245)
...+..++|+||++. +++..|+.+++.+...... ... .........+.++++.+++.+...++++. +|||||
T Consensus 80 --~~~~~~~~~~~q~~~-~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LSgG~ 156 (252)
T CHL00131 80 --ERAHLGIFLAFQYPI-EIPGVSNADFLRLAYNSKRKFQGLPELDPLEFLEIINEKLKLVGMDPSFLSRNVNEGFSGGE 156 (252)
T ss_pred --hhheeeEEEEecccc-ccccccHHHHHHHhhhhhhcccccccccHHHHHHHHHHHHHHcCCchhhhccccccCCCHHH
Confidence 111225889999984 6677899999876421100 000 00112234567889999997323578887 599999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhh-ccEEEEEeCCeEEEec
Q 035832 166 KRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAAL-VDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 166 kqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~-~d~v~~l~~G~i~~~~ 241 (245)
||||+|||||+.+|++|||||||+|||+.+++.++++|+++.+ +.|||++|||++++..+ ||++++|++|+++..+
T Consensus 157 ~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~~tH~~~~~~~~~~d~i~~l~~G~i~~~~ 234 (252)
T CHL00131 157 KKRNEILQMALLDSELAILDETDSGLDIDALKIIAEGINKLMTSENSIILITHYQRLLDYIKPDYVHVMQNGKIIKTG 234 (252)
T ss_pred HHHHHHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHhhhCCEEEEEeCCEEEEec
Confidence 9999999999999999999999999999999999999999864 68999999999998877 8999999999998765
|
|
| >PRK14255 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-50 Score=348.76 Aligned_cols=219 Identities=25% Similarity=0.406 Sum_probs=178.4
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--C---CcceEEEcCccCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK--P---TSGSINIRGYNNDGEPNN 89 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p---~~G~i~~~g~~~~~~~~~ 89 (245)
.+||+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++ | ++|+|.++|+++.....
T Consensus 3 ~~~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~~~~~~~- 79 (252)
T PRK14255 3 KKIITSSDVHLFYGK--FEALKGIDLDFNQNEITALIGPSGCGKSTYLRTLNRMNDLIPGVTITGNVSLRGQNIYAPNE- 79 (252)
T ss_pred cceEEEEeEEEEECC--eeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhcccccCCCCCcccEEEEcCEEcccccc-
Confidence 357999999999974 569999999999999999999999999999999999975 4 59999999988743111
Q ss_pred CCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC---ccCCCCCCCCChHHH
Q 035832 90 SPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG---TSLDKDPHSLSGGYK 166 (245)
Q Consensus 90 ~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqk 166 (245)
.....++.++|+||++. .++ .|+.+|+.++....... ......+.+.+.++.+++.. ...++++.+||||||
T Consensus 80 -~~~~~~~~i~~~~q~~~-~~~-~tv~~nl~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~Gq~ 154 (252)
T PRK14255 80 -DVVQLRKQVGMVFQQPN-PFP-FSIYENVIYGLRLAGVK--DKAVLDEAVETSLKQAAIWDEVKDHLHESALSLSGGQQ 154 (252)
T ss_pred -cHHHhcCeEEEEECCCc-cCC-CcHHHHHHHHHHHcCCC--CHHHHHHHHHHHHHHcCCccchhhHHhcCcccCCHHHH
Confidence 01123467999999984 454 79999998752111000 11122334566777777631 125789999999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 167 RRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 167 qrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||++|||||+.+|++|||||||+|||+.+++.+.++|+++.++.|||++||+++++..+||++++|++|+++..+
T Consensus 155 qrv~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tii~vsH~~~~~~~~~d~i~~l~~G~i~~~~ 229 (252)
T PRK14255 155 QRVCIARVLAVKPDVILLDEPTSALDPISSTQIENMLLELRDQYTIILVTHSMHQASRISDKTAFFLTGNLIEFA 229 (252)
T ss_pred HHHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHhCCEEEEEECCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999999876689999999999999999999999999998754
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.4e-51 Score=381.00 Aligned_cols=219 Identities=21% Similarity=0.295 Sum_probs=182.6
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CcceEEEcCccCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP--TSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
+|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++...+. ...
T Consensus 1 ~l~i~~l~~~~~~--~~il~~isl~i~~Ge~~~liG~nGsGKSTLl~~i~G~~~~~~~~G~i~~~g~~~~~~~~---~~~ 75 (500)
T TIGR02633 1 LLEMKGIVKTFGG--VKALDGIDLEVRPGECVGLCGENGAGKSTLMKILSGVYPHGTWDGEIYWSGSPLKASNI---RDT 75 (500)
T ss_pred CEEEEeEEEEeCC--eEeecceEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECCCCCH---HHH
Confidence 4899999999964 4699999999999999999999999999999999999987 79999999988753211 011
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCc-hhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGS-IQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
+++++||+||++. +++.+|+.+|+.++....... .........++.++++.+++.+...++++.+|||||||||+|||
T Consensus 76 ~~~~i~~v~q~~~-~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iA~ 154 (500)
T TIGR02633 76 ERAGIVIIHQELT-LVPELSVAENIFLGNEITLPGGRMAYNAMYLRAKNLLRELQLDADNVTRPVGDYGGGQQQLVEIAK 154 (500)
T ss_pred HhCCEEEEeeccc-cCCCCcHHHHHHhhccccccccccCHHHHHHHHHHHHHHcCCCCCcccCchhhCCHHHHHHHHHHH
Confidence 2457999999984 667889999998863211000 00112234567889999999764236789999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||+.+|++|||||||+|||+.+++.+.++|+++++ +.|||++|||++++..+||++++|++|+++...
T Consensus 155 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviiitHd~~~~~~~~d~i~~l~~G~i~~~~ 223 (500)
T TIGR02633 155 ALNKQARLLILDEPSSSLTEKETEILLDIIRDLKAHGVACVYISHKLNEVKAVCDTICVIRDGQHVATK 223 (500)
T ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHHHHhCCEEEEEeCCeEeeec
Confidence 99999999999999999999999999999999864 589999999999999999999999999998654
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >PRK14243 phosphate transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-50 Score=350.34 Aligned_cols=217 Identities=24% Similarity=0.397 Sum_probs=177.8
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCcceEEEcCccCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK-----PTSGSINIRGYNNDGEPNN 89 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~~~ 89 (245)
.++|+++|++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++ |++|+|+++|.++......
T Consensus 8 ~~~l~i~~v~~~~~~--~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~~ 85 (264)
T PRK14243 8 ETVLRTENLNVYYGS--FLAVKNVWLDIPKNQITAFIGPSGCGKSTILRCFNRLNDLIPGFRVEGKVTFHGKNLYAPDVD 85 (264)
T ss_pred ceEEEEeeeEEEECC--EEEeecceEEEcCCCEEEEECCCCCCHHHHHHHHHhhhcccCCCCCceEEEECCEEccccccC
Confidence 458999999999964 469999999999999999999999999999999999986 4799999999876421111
Q ss_pred CCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC---ccCCCCCCCCChHHH
Q 035832 90 SPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG---TSLDKDPHSLSGGYK 166 (245)
Q Consensus 90 ~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqk 166 (245)
....+++++|+||++. +++ .|+.+|+.++.... .. .....+.+.++++.+++.. ...++++.+||||||
T Consensus 86 --~~~~~~~i~~v~q~~~-~~~-~tv~enl~~~~~~~-~~---~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LSgGq~ 157 (264)
T PRK14243 86 --PVEVRRRIGMVFQKPN-PFP-KSIYDNIAYGARIN-GY---KGDMDELVERSLRQAALWDEVKDKLKQSGLSLSGGQQ 157 (264)
T ss_pred --hHHHhhhEEEEccCCc-ccc-ccHHHHHHhhhhhc-Cc---chHHHHHHHHHHHHhCchhhHHHHhcCCcccCCHHHH
Confidence 1123567999999984 444 59999998763211 11 1112234556677777632 125788999999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEe---------CCeE
Q 035832 167 RRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMD---------MGGF 237 (245)
Q Consensus 167 qrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~---------~G~i 237 (245)
||++|||||+.+|++|||||||+|||+.+++.++++|.++.++.|||++||+++++..+||++++|+ +|++
T Consensus 158 qrv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~tvi~vtH~~~~~~~~~d~v~~l~~~~~~~~~~~g~i 237 (264)
T PRK14243 158 QRLCIARAIAVQPEVILMDEPCSALDPISTLRIEELMHELKEQYTIIIVTHNMQQAARVSDMTAFFNVELTEGGGRYGYL 237 (264)
T ss_pred HHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEecccccccccCceE
Confidence 9999999999999999999999999999999999999999766899999999999999999999998 7998
Q ss_pred EEec
Q 035832 238 LVEQ 241 (245)
Q Consensus 238 ~~~~ 241 (245)
+..+
T Consensus 238 ~~~~ 241 (264)
T PRK14243 238 VEFD 241 (264)
T ss_pred EEeC
Confidence 8654
|
|
| >COG4525 TauB ABC-type taurine transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-51 Score=329.87 Aligned_cols=211 Identities=32% Similarity=0.470 Sum_probs=185.8
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
.++.+++++.+|++..+.+|+|+|++|.+||.++++||||||||||||+++|+.+|+.|+|.++|..+.+..
T Consensus 2 ~~l~~~~~sl~y~g~~~~~le~vsL~ia~ge~vv~lGpSGcGKTTLLnl~AGf~~P~~G~i~l~~r~i~gPg-------- 73 (259)
T COG4525 2 CMLNVSHLSLSYEGKPRSALEDVSLTIASGELVVVLGPSGCGKTTLLNLIAGFVTPSRGSIQLNGRRIEGPG-------- 73 (259)
T ss_pred ceeehhheEEecCCcchhhhhccceeecCCCEEEEEcCCCccHHHHHHHHhcCcCcccceEEECCEeccCCC--------
Confidence 468899999999876566999999999999999999999999999999999999999999999999886532
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
..-|.|||++. +++.+|+.||++|++..... .+....+.+.+.+..+||.+. .++++.+|||||||||.|||||
T Consensus 74 -aergvVFQ~~~-LlPWl~~~dNvafgL~l~Gi---~k~~R~~~a~q~l~~VgL~~~-~~~~i~qLSGGmrQRvGiARAL 147 (259)
T COG4525 74 -AERGVVFQNEA-LLPWLNVIDNVAFGLQLRGI---EKAQRREIAHQMLALVGLEGA-EHKYIWQLSGGMRQRVGIARAL 147 (259)
T ss_pred -ccceeEeccCc-cchhhHHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHhCcccc-cccceEeecchHHHHHHHHHHh
Confidence 23489999985 78999999999998543221 133445678889999999986 6999999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-c-CceEEEEecChhHHHhhccEEEEEe--CCeEEEe
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLK-K-ELTILVVSHDLKEMAALVDHSWRMD--MGGFLVE 240 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~-~~tiii~tHd~~~~~~~~d~v~~l~--~G~i~~~ 240 (245)
+.+|++|+||||+++||.-+++.+.++|-++- . ++.+++||||++++.-+++++++|+ .|+++..
T Consensus 148 a~eP~~LlLDEPfgAlDa~tRe~mQelLldlw~~tgk~~lliTH~ieEAlflatrLvvlsp~pgRvv~~ 216 (259)
T COG4525 148 AVEPQLLLLDEPFGALDALTREQMQELLLDLWQETGKQVLLITHDIEEALFLATRLVVLSPGPGRVVER 216 (259)
T ss_pred hcCcceEeecCchhhHHHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHhhhheeEEecCCCceeeEe
Confidence 99999999999999999999999999998874 3 6899999999999999999999998 4677653
|
|
| >cd03244 ABCC_MRP_domain2 Domain 2 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-51 Score=345.31 Aligned_cols=206 Identities=29% Similarity=0.341 Sum_probs=170.2
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|++++|++..+++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... ..+++
T Consensus 3 l~~~~l~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~----~~~~~ 78 (221)
T cd03244 3 IEFKNVSLRYRPNLPPVLKNISFSIKPGEKVGIVGRTGSGKSSLLLALFRLVELSSGSILIDGVDISKIGL----HDLRS 78 (221)
T ss_pred EEEEEEEEecCCCCcccccceEEEECCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhHhCCH----HHHhh
Confidence 78999999997533569999999999999999999999999999999999999999999999987643221 12356
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHc-----------CCCCccCCCCCCCCChHHH
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWV-----------GLDGTSLDKDPHSLSGGYK 166 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~~LSgGqk 166 (245)
.++|+||++. ++ ..|+.||+.+.. . . . . .++.++++.+ ++... .++++.+||+||+
T Consensus 79 ~i~~~~q~~~-l~-~~tv~enl~~~~-~-~-~---~----~~~~~~~~~~~l~~~~~~l~~~l~~~-~~~~~~~LS~G~~ 145 (221)
T cd03244 79 RISIIPQDPV-LF-SGTIRSNLDPFG-E-Y-S---D----EELWQALERVGLKEFVESLPGGLDTV-VEEGGENLSVGQR 145 (221)
T ss_pred hEEEECCCCc-cc-cchHHHHhCcCC-C-C-C---H----HHHHHHHHHhCcHHHHHhcccccccc-cccCCCcCCHHHH
Confidence 7999999985 44 569999997531 1 1 1 1 1122233333 34332 3678999999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 167 RRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 167 qrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||++|||||+.+|+++||||||+|||+.+++.++++|+++.++.|||++||+++++.. ||++++|++|+++..+
T Consensus 146 qr~~laral~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~i~~l~~g~~~~~~ 219 (221)
T cd03244 146 QLLCLARALLRKSKILVLDEATASVDPETDALIQKTIREAFKDCTVLTIAHRLDTIID-SDRILVLDKGRVVEFD 219 (221)
T ss_pred HHHHHHHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh-CCEEEEEECCeEEecC
Confidence 9999999999999999999999999999999999999998767899999999999875 9999999999998764
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminus, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resistance lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-51 Score=381.16 Aligned_cols=216 Identities=22% Similarity=0.333 Sum_probs=181.7
Q ss_pred EEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcE
Q 035832 20 VRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKV 99 (245)
Q Consensus 20 ~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i 99 (245)
++|++++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+. ...+++++
T Consensus 1 ~~nl~~~~~~--~~il~~vs~~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~---~~~~~~~i 75 (491)
T PRK10982 1 MSNISKSFPG--VKALDNVNLKVRPHSIHALMGENGAGKSTLLKCLFGIYQKDSGSILFQGKEIDFKSS---KEALENGI 75 (491)
T ss_pred CCceEEEeCC--EEeeeeeeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCEECCCCCH---HHHHhCCE
Confidence 4689999964 469999999999999999999999999999999999999999999999988743211 11124579
Q ss_pred EEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCC
Q 035832 100 GIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVP 179 (245)
Q Consensus 100 ~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p 179 (245)
+|+||++. +++..||.+|+.++...............+++.++++.+++... .++++.+|||||||||+|||||+.+|
T Consensus 76 ~~v~q~~~-~~~~~tv~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgGq~qrv~lA~al~~~p 153 (491)
T PRK10982 76 SMVHQELN-LVLQRSVMDNMWLGRYPTKGMFVDQDKMYRDTKAIFDELDIDID-PRAKVATLSVSQMQMIEIAKAFSYNA 153 (491)
T ss_pred EEEecccc-cccCCCHHHHhhcccccccccccCHHHHHHHHHHHHHHcCCCCC-ccCchhhCCHHHHHHHHHHHHHHhCC
Confidence 99999984 66788999999876321111000112234567889999999875 69999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 180 DLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 180 ~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
++|||||||+|||+.+++.++++|+++++ +.|||++|||++++..+||++++|++|+++..+.
T Consensus 154 ~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvii~tH~~~~~~~~~d~i~~l~~G~i~~~~~ 217 (491)
T PRK10982 154 KIVIMDEPTSSLTEKEVNHLFTIIRKLKERGCGIVYISHKMEEIFQLCDEITILRDGQWIATQP 217 (491)
T ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEeecC
Confidence 99999999999999999999999999864 6899999999999999999999999999987643
|
|
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-51 Score=372.21 Aligned_cols=223 Identities=25% Similarity=0.317 Sum_probs=195.1
Q ss_pred CCcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCC
Q 035832 13 CDYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPE 92 (245)
Q Consensus 13 ~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 92 (245)
...++++++|++|+|++ .++|++|||++.+||++||+|.||||||||+|+|+|.++|++|+|+++|+.....+. .
T Consensus 4 ~~~~ll~~~~i~K~Fgg--V~AL~~v~l~v~~GEV~aL~GeNGAGKSTLmKiLsGv~~p~~G~I~~~G~~~~~~sp---~ 78 (500)
T COG1129 4 STPPLLELRGISKSFGG--VKALDGVSLTVRPGEVHALLGENGAGKSTLMKILSGVYPPDSGEILIDGKPVAFSSP---R 78 (500)
T ss_pred CccceeeeecceEEcCC--ceeeccceeEEeCceEEEEecCCCCCHHHHHHHHhCcccCCCceEEECCEEccCCCH---H
Confidence 45668999999999985 579999999999999999999999999999999999999999999999998754322 2
Q ss_pred CCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCC-CchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHH
Q 035832 93 PLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQS-GSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLAL 171 (245)
Q Consensus 93 ~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~i 171 (245)
......|+.|+|+.. +++.+||.||+.++..... ......+....++.++|+.+++... .+.++.+||.||||.|+|
T Consensus 79 ~A~~~GI~~V~QEl~-L~p~LsVaeNifLgre~~~~~g~id~~~m~~~A~~~l~~lg~~~~-~~~~v~~LsiaqrQ~VeI 156 (500)
T COG1129 79 DALAAGIATVHQELS-LVPNLSVAENIFLGREPTRRFGLIDRKAMRRRARELLARLGLDID-PDTLVGDLSIAQRQMVEI 156 (500)
T ss_pred HHHhCCcEEEeechh-ccCCccHHHHhhcccccccCCCccCHHHHHHHHHHHHHHcCCCCC-hhhhhhhCCHHHHHHHHH
Confidence 233567999999985 8899999999999843222 1222345667788999999999644 799999999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 172 AIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 172 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
|||+..++++||||||||+|+....+.++++++++++ +.+||+|||.++++.++|||+.+|.||+.+.+..
T Consensus 157 ArAl~~~arllIlDEPTaaLt~~E~~~Lf~~ir~Lk~~Gv~ii~ISHrl~Ei~~i~DritVlRDG~~v~~~~ 228 (500)
T COG1129 157 ARALSFDARVLILDEPTAALTVKETERLFDLIRRLKAQGVAIIYISHRLDEVFEIADRITVLRDGRVVGTRP 228 (500)
T ss_pred HHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHhcCEEEEEeCCEEeeecc
Confidence 9999999999999999999999999999999999975 6999999999999999999999999999987654
|
|
| >cd03253 ABCC_ATM1_transporter ATM1 is an ABC transporter that is expressed in the mitochondria | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-51 Score=345.84 Aligned_cols=214 Identities=28% Similarity=0.392 Sum_probs=172.3
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|++++|+++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..+++
T Consensus 1 l~~~~l~~~~~~~-~~~l~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~v~~~g~~~~~~~~----~~~~~ 75 (236)
T cd03253 1 IEFENVTFAYDPG-RPVLKDVSFTIPAGKKVAIVGPSGSGKSTILRLLFRFYDVSSGSILIDGQDIREVTL----DSLRR 75 (236)
T ss_pred CEEEEEEEEeCCC-CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEhhhCCH----HHHHh
Confidence 4789999999642 468999999999999999999999999999999999999999999999987743211 12346
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHH-HHHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEY-LALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
.++|+||++. ++ ..|+.+|+.++.... ........ ....+.+.++.+ ++... .++++.+|||||||||+||||
T Consensus 76 ~i~~~~q~~~-~~-~~tv~~nl~~~~~~~-~~~~~~~~~~~~~l~~~~~~l~~~~~~~-~~~~~~~LS~G~~~rl~la~a 151 (236)
T cd03253 76 AIGVVPQDTV-LF-NDTIGYNIRYGRPDA-TDEEVIEAAKAAQIHDKIMRFPDGYDTI-VGERGLKLSGGEKQRVAIARA 151 (236)
T ss_pred hEEEECCCCh-hh-cchHHHHHhhcCCCC-CHHHHHHHHHHcCcHHHHHhccccccch-hhcCCCcCCHHHHHHHHHHHH
Confidence 7999999984 44 579999998863211 10000000 111233444444 55553 577899999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|+.+|+++||||||+|||+.+++.+.++|.+++++.|||++||+++++.. ||++++|++|+++..+
T Consensus 152 L~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~-~d~~~~l~~g~i~~~~ 217 (236)
T cd03253 152 ILKNPPILLLDEATSALDTHTEREIQAALRDVSKGRTTIVIAHRLSTIVN-ADKIIVLKDGRIVERG 217 (236)
T ss_pred HhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHHh-CCEEEEEECCEEEeeC
Confidence 99999999999999999999999999999998667899999999999865 9999999999998653
|
Although the specific function of ATM1 is unknown, its disruption results in the accumulation of excess mitochondrial iron, loss of mitochondrial cytochromes, oxidative damage to mitochondrial DNA, and decreased levels of cytosolic heme proteins. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK10261 glutathione transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-51 Score=392.22 Aligned_cols=225 Identities=24% Similarity=0.341 Sum_probs=183.7
Q ss_pred cceEEEEeEEEECCCC--ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCC-----
Q 035832 15 YSCLEVRDVSYRPPGT--QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEP----- 87 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~--~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~----- 87 (245)
++||+++|++++|+.. ..++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|.++....
T Consensus 10 ~~~l~v~~l~~~y~~~~~~~~~l~~is~~v~~Ge~~~lvG~nGsGKSTLl~~l~Gll~p~~G~i~~~g~~~~~~~~~~~~ 89 (623)
T PRK10261 10 RDVLAVENLNIAFMQEQQKIAAVRNLSFSLQRGETLAIVGESGSGKSVTALALMRLLEQAGGLVQCDKMLLRRRSRQVIE 89 (623)
T ss_pred CceEEEeceEEEecCCCCceeEEEeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCeEEEECCEEeccccccccc
Confidence 4589999999999631 246999999999999999999999999999999999999999999999987552110
Q ss_pred C-CCC----CCCCCCcEEEEecCCC-CCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC--ccCCCCCC
Q 035832 88 N-NSP----EPLPPEKVGIVFQFPE-RYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG--TSLDKDPH 159 (245)
Q Consensus 88 ~-~~~----~~~~~~~i~~v~Q~~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~ 159 (245)
. ... ...++++||||||+|. .+++.+||.+|+.++....... ......+++.++++.+||.+ ..++++++
T Consensus 90 ~~~~~~~~~~~~r~~~ig~v~Q~~~~~l~~~~tv~e~l~~~~~~~~~~--~~~~~~~~~~~~l~~~gL~~~~~~~~~~~~ 167 (623)
T PRK10261 90 LSEQSAAQMRHVRGADMAMIFQEPMTSLNPVFTVGEQIAESIRLHQGA--SREEAMVEAKRMLDQVRIPEAQTILSRYPH 167 (623)
T ss_pred cccCCHHHHHHHhCCCEEEEEeCchhhcCCCCCHHHHHHHHHHHhcCC--CHHHHHHHHHHHHHHCCCCChhhHHhCCCc
Confidence 0 000 0112357999999973 2456689999998863111011 12234456888999999963 13689999
Q ss_pred CCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-c-CceEEEEecChhHHHhhccEEEEEeCCeE
Q 035832 160 SLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLK-K-ELTILVVSHDLKEMAALVDHSWRMDMGGF 237 (245)
Q Consensus 160 ~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i 237 (245)
+|||||||||+|||||+.+|++|||||||++||+.++++++++|+++. + ++|||+||||++++..+||||++|++|++
T Consensus 168 ~LSgGq~QRv~iA~AL~~~P~lLllDEPt~~LD~~~~~~l~~ll~~l~~~~g~tvi~itHdl~~~~~~adri~vl~~G~i 247 (623)
T PRK10261 168 QLSGGMRQRVMIAMALSCRPAVLIADEPTTALDVTIQAQILQLIKVLQKEMSMGVIFITHDMGVVAEIADRVLVMYQGEA 247 (623)
T ss_pred cCCHHHHHHHHHHHHHhCCCCEEEEeCCCCccCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEeeCCee
Confidence 999999999999999999999999999999999999999999999996 3 68999999999999999999999999999
Q ss_pred EEec
Q 035832 238 LVEQ 241 (245)
Q Consensus 238 ~~~~ 241 (245)
+.++
T Consensus 248 ~~~g 251 (623)
T PRK10261 248 VETG 251 (623)
T ss_pred cccC
Confidence 8643
|
|
| >PRK10418 nikD nickel transporter ATP-binding protein NikD; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-50 Score=347.25 Aligned_cols=211 Identities=26% Similarity=0.381 Sum_probs=176.7
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC----CcceEEEcCccCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP----TSGSINIRGYNNDGEPNNSPE 92 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p----~~G~i~~~g~~~~~~~~~~~~ 92 (245)
+|+++|++++| + +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++...
T Consensus 4 ~l~~~~l~~~~-~--~~il~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~~~~~~~~G~i~~~g~~i~~~------ 74 (254)
T PRK10418 4 QIELRNIALQA-A--QPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAAALGILPAGVRQTAGRVLLDGKPVAPC------ 74 (254)
T ss_pred EEEEeCeEEEe-c--cceecceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCcCCEEEECCeecccc------
Confidence 69999999999 3 3689999999999999999999999999999999999999 999999999887421
Q ss_pred CCCCCcEEEEecCCCCCC-CcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCc--cCCCCCCCCChHHHHHH
Q 035832 93 PLPPEKVGIVFQFPERYF-VADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGT--SLDKDPHSLSGGYKRRL 169 (245)
Q Consensus 93 ~~~~~~i~~v~Q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~~LSgGqkqrv 169 (245)
..+++.++|+||++...| +..|+.+++.+..... ... . ....+.++++.+++.+. .+++++.+|||||||||
T Consensus 75 ~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~-~~~--~--~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~Gq~qrv 149 (254)
T PRK10418 75 ALRGRKIATIMQNPRSAFNPLHTMHTHARETCLAL-GKP--A--DDATLTAALEAVGLENAARVLKLYPFEMSGGMLQRM 149 (254)
T ss_pred ccccceEEEEecCCccccCccccHHHHHHHHHHHc-CCC--h--HHHHHHHHHHHcCCCChhhhhhcCCcccCHHHHHHH
Confidence 112457999999974233 3468888875531110 110 1 12457788999999752 25889999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 170 ALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 170 ~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+|||||+.+|++|||||||+|||+.+++.++++|+++.+ +.|||++||+++++..+||++++|++|+++..+
T Consensus 150 ~laral~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~~~~~g~til~~sH~~~~~~~~~d~v~~l~~G~i~~~~ 223 (254)
T PRK10418 150 MIALALLCEAPFIIADEPTTDLDVVAQARILDLLESIVQKRALGMLLVTHDMGVVARLADDVAVMSHGRIVEQG 223 (254)
T ss_pred HHHHHHhcCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHhcCcEEEEEecCHHHHHHhCCEEEEEECCEEEEec
Confidence 999999999999999999999999999999999999853 589999999999999999999999999998654
|
|
| >PRK14252 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-50 Score=348.49 Aligned_cols=227 Identities=26% Similarity=0.385 Sum_probs=182.1
Q ss_pred CCccCCcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CcceEEEcCccC
Q 035832 9 GGISCDYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP-----TSGSINIRGYNN 83 (245)
Q Consensus 9 ~~~~~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~ 83 (245)
|.......+|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|.++
T Consensus 8 ~~~~~~~~~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~sG~i~~~g~~~ 85 (265)
T PRK14252 8 GDVSPTQQKSEVNKLNFYYGG--YQALKNINMMVHEKQVTALIGPSGCGKSTFLRCFNRMHDLYPGNHYEGEIILHPDNV 85 (265)
T ss_pred CCccCCCceEEEEEEEEEECC--eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCCCcccEEEEcCccc
Confidence 334445667999999999964 4699999999999999999999999999999999999975 799999999765
Q ss_pred CCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC---ccCCCCCCC
Q 035832 84 DGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG---TSLDKDPHS 160 (245)
Q Consensus 84 ~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~ 160 (245)
...........+++.++|+||++. .+. .|+.||+.++...... .......+.+.++++.+++.+ ...++.+.+
T Consensus 86 ~~~~~~~~~~~~~~~i~~~~q~~~-~~~-~tv~eni~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~ 161 (265)
T PRK14252 86 NILSPEVDPIEVRMRISMVFQKPN-PFP-KSIFENVAYGLRIRGV--KRRSILEERVENALRNAALWDEVKDRLGDLAFN 161 (265)
T ss_pred cccccccCHHHHhccEEEEccCCc-CCc-chHHHHHHhHHHHcCC--ChHHHHHHHHHHHHHHcCCchhhhHHHhCCccc
Confidence 321111011123567999999985 454 5999999875211100 011122345667778787631 125788999
Q ss_pred CChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEe
Q 035832 161 LSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240 (245)
Q Consensus 161 LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~ 240 (245)
|||||+||++|||||+.+|+++||||||+|||+.+++.+.+.|++++++.|||++||+++++..+||++++|++|+++..
T Consensus 162 LS~G~~qrv~laral~~~p~llllDEPt~gLD~~~~~~l~~~l~~l~~~~tiiivth~~~~~~~~~d~i~~l~~G~i~~~ 241 (265)
T PRK14252 162 LSGGQQQRLCIARALATDPEILLFDEPTSALDPIATASIEELISDLKNKVTILIVTHNMQQAARVSDYTAYMYMGELIEF 241 (265)
T ss_pred CCHHHHHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCEEEEEecCHHHHHHhCCEEEEEECCEEEEe
Confidence 99999999999999999999999999999999999999999999987678999999999999999999999999999875
Q ss_pred c
Q 035832 241 Q 241 (245)
Q Consensus 241 ~ 241 (245)
+
T Consensus 242 g 242 (265)
T PRK14252 242 G 242 (265)
T ss_pred C
Confidence 4
|
|
| >PRK14260 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-50 Score=348.98 Aligned_cols=218 Identities=26% Similarity=0.405 Sum_probs=179.0
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CcceEEEcCccCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP-----TSGSINIRGYNNDGEPNNS 90 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~~~~~~~~ 90 (245)
++|+++|++++|++ .++|+|+||+|++||+++|+|+||||||||+++|+|+++| ++|+|.++|+++...+.
T Consensus 6 ~~l~~~~l~~~~~~--~~il~~isl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~~~~~~~G~i~~~g~~i~~~~~-- 81 (259)
T PRK14260 6 PAIKVKDLSFYYNT--SKAIEGISMDIYRNKVTAIIGPSGCGKSTFIKTLNRISELEGPVKVEGVVDFFGQNIYDPRI-- 81 (259)
T ss_pred ceEEEEEEEEEECC--eEeecceEEEEcCCCEEEEECCCCCCHHHHHHHHHhhcCcccCCccceEEEECCEecccccc--
Confidence 36999999999964 4699999999999999999999999999999999999985 48999999988743111
Q ss_pred CCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC---ccCCCCCCCCChHHHH
Q 035832 91 PEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG---TSLDKDPHSLSGGYKR 167 (245)
Q Consensus 91 ~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkq 167 (245)
....+++.++|+||++. +++ .|+.||+.++.... ... ........+.++++.+++.+ ..+++++.+|||||||
T Consensus 82 ~~~~~~~~i~~v~q~~~-l~~-~tv~enl~~~~~~~-~~~-~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~G~~q 157 (259)
T PRK14260 82 NINRLRRQIGMVFQRPN-PFP-MSIYENVAYGVRIS-AKL-PQADLDEIVESALKGAALWQEVKDKLNKSALGLSGGQQQ 157 (259)
T ss_pred chHhhhhheEEEecccc-cCC-ccHHHHHHHHHHHh-cCC-CHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHH
Confidence 11123467999999984 454 89999998752111 000 11222345677888888742 1368899999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEe-----CCeEEEec
Q 035832 168 RLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMD-----MGGFLVEQ 241 (245)
Q Consensus 168 rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~-----~G~i~~~~ 241 (245)
|++|||||+.+|++|||||||+|||+.++..++++|++++++.|||++||+++++..+||++++|+ +|+++..+
T Consensus 158 rv~laral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~tiii~tH~~~~i~~~~d~i~~l~~~~~~~G~i~~~~ 236 (259)
T PRK14260 158 RLCIARALAIKPKVLLMDEPCSALDPIATMKVEELIHSLRSELTIAIVTHNMQQATRVSDFTAFFSTDESRIGQMVEFG 236 (259)
T ss_pred HHHHHHHHhcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCeEEEEeccCCCCceEEEeC
Confidence 999999999999999999999999999999999999998767899999999999999999999998 59988654
|
|
| >TIGR02324 CP_lyasePhnL phosphonate C-P lyase system protein PhnL | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-51 Score=344.44 Aligned_cols=213 Identities=24% Similarity=0.290 Sum_probs=171.9
Q ss_pred eEEEEeEEEECCC----C-ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcC--c--cCCCCC
Q 035832 17 CLEVRDVSYRPPG----T-QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRG--Y--NNDGEP 87 (245)
Q Consensus 17 ~l~~~~l~~~y~~----~-~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g--~--~~~~~~ 87 (245)
||+++|++++|++ + ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++| . ++...+
T Consensus 1 ml~~~~l~~~~~~~~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~i~~~~~g~~~~~~~~~ 80 (224)
T TIGR02324 1 LLEVEDLSKTFTLHQQGGVRLPVLKNVSLTVNAGECVALSGPSGAGKSTLLKSLYANYLPDSGRILVRHEGAWVDLAQAS 80 (224)
T ss_pred CEEEEeeEEEeecccCCCcceEEEecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEEecCCCccchhhcC
Confidence 5899999999953 1 24699999999999999999999999999999999999999999999984 2 332111
Q ss_pred CCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHH
Q 035832 88 NNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKR 167 (245)
Q Consensus 88 ~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkq 167 (245)
.......++++++|+||++. +++..|+.||+.+..... .. ......+.+.++++.+++.+...++++.+|||||||
T Consensus 81 ~~~~~~~~~~~i~~~~q~~~-~~~~~tv~e~l~~~~~~~-~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS~G~~q 156 (224)
T TIGR02324 81 PREVLEVRRKTIGYVSQFLR-VIPRVSALEVVAEPLLER-GV--PREAARARARELLARLNIPERLWHLPPATFSGGEQQ 156 (224)
T ss_pred HHHHHHHHhcceEEEecccc-cCCCccHHHHHHHHHHHc-CC--CHHHHHHHHHHHHHHcCCchhhhhCCcccCCHHHHH
Confidence 00000012356999999985 667789999997642111 11 112234467788999999753347899999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEe
Q 035832 168 RLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMD 233 (245)
Q Consensus 168 rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~ 233 (245)
|++|||||+.+|+++||||||++||+.+++.+.+.|+++++ +.|||++||+++++..+||+++.+.
T Consensus 157 rl~laral~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tii~vsH~~~~~~~~~d~i~~~~ 223 (224)
T TIGR02324 157 RVNIARGFIADYPILLLDEPTASLDAANRQVVVELIAEAKARGAALIGIFHDEEVRELVADRVMDVT 223 (224)
T ss_pred HHHHHHHHhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcceeEecC
Confidence 99999999999999999999999999999999999999864 6899999999999989999998763
|
Members of this family are the PhnL protein of C-P lyase systems for utilization of phosphonates. These systems resemble phosphonatase-based systems in having a three component ABC transporter, where TIGR01097 is the permease, TIGR01098 is the phosphonates binding protein, and TIGR02315 is the ATP-binding cassette (ABC) protein. They differ, however, in having, typically, ten or more additional genes, many of which are believed to form a membrane-associated C-P lysase complex. This protein (PhnL) and the adjacent-encoded PhnK (TIGR02323) resemble transporter ATP-binding proteins but are suggested, based on mutatgenesis studies, to be part of this C-P lyase complex rather than part of a transporter per se. |
| >PRK13543 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-50 Score=340.21 Aligned_cols=204 Identities=25% Similarity=0.299 Sum_probs=175.1
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
+.++|+++|++++|++ +++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...
T Consensus 8 ~~~~l~~~~l~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~i~~~------- 78 (214)
T PRK13543 8 APPLLAAHALAFSRNE--EPVFGPLDFHVDAGEALLVQGDNGAGKTTLLRVLAGLLHVESGQIQIDGKTATRG------- 78 (214)
T ss_pred CcceEEEeeEEEecCC--ceeeecceEEECCCCEEEEEcCCCCCHHHHHHHHhCCCCCCCeeEEECCEEccch-------
Confidence 3468999999999964 4699999999999999999999999999999999999999999999999876421
Q ss_pred CCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
..++.++|++|++. ++...|+.||+.+..... .. ...+.+.++++.+++.+. .++++.+||||||||++|||
T Consensus 79 ~~~~~i~~~~q~~~-~~~~~t~~e~l~~~~~~~-~~-----~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrv~lar 150 (214)
T PRK13543 79 DRSRFMAYLGHLPG-LKADLSTLENLHFLCGLH-GR-----RAKQMPGSALAIVGLAGY-EDTLVRQLSAGQKKRLALAR 150 (214)
T ss_pred hhhhceEEeecCcc-cccCCcHHHHHHHHHHhc-CC-----cHHHHHHHHHHHcCChhh-ccCChhhCCHHHHHHHHHHH
Confidence 12356999999974 556679999997742110 10 112345678899999875 69999999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeC
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDM 234 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~ 234 (245)
|++.+|+++||||||++||+.+++.+.++|+++.+ +.|+|++|||++++.++||++++++.
T Consensus 151 al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~~~~~i~~l~~ 212 (214)
T PRK13543 151 LWLSPAPLWLLDEPYANLDLEGITLVNRMISAHLRGGGAALVTTHGAYAAPPVRTRMLTLEA 212 (214)
T ss_pred HHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecChhhhhhhcceEEEEee
Confidence 99999999999999999999999999999998864 58999999999999999999999874
|
|
| >PRK13549 xylose transporter ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-51 Score=382.80 Aligned_cols=225 Identities=26% Similarity=0.296 Sum_probs=184.1
Q ss_pred CcceEEEEeEEEECCC-CccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-CCcceEEEcCccCCCCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPG-TQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK-PTSGSINIRGYNNDGEPNNSP 91 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~-~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~ 91 (245)
+.++|+++|++++|+. +.+++|+|+||+|++||+++|+||||||||||+|+|+|+++ |++|+|.++|+++.....
T Consensus 256 ~~~~l~~~~l~~~~~~~~~~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~~~G~i~~~g~~~~~~~~--- 332 (506)
T PRK13549 256 GEVILEVRNLTAWDPVNPHIKRVDDVSFSLRRGEILGIAGLVGAGRTELVQCLFGAYPGRWEGEIFIDGKPVKIRNP--- 332 (506)
T ss_pred CCceEEEecCccccccccccccccceeeEEcCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCcEEEECCEECCCCCH---
Confidence 3458999999999942 12468999999999999999999999999999999999998 599999999988742211
Q ss_pred CCCCCCcEEEEecCCC--CCCCcccHHHHHHhcCCCCC-C-chhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHH
Q 035832 92 EPLPPEKVGIVFQFPE--RYFVADNVLDEVIFGWPRQS-G-SIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKR 167 (245)
Q Consensus 92 ~~~~~~~i~~v~Q~~~--~~~~~~tv~e~l~~~~~~~~-~-~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkq 167 (245)
....++.++|+||++. .+++.+|+.||+.++..... . ..........++.++++.+++.....++++.+|||||||
T Consensus 333 ~~~~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~kq 412 (506)
T PRK13549 333 QQAIAQGIAMVPEDRKRDGIVPVMGVGKNITLAALDRFTGGSRIDDAAELKTILESIQRLKVKTASPELAIARLSGGNQQ 412 (506)
T ss_pred HHHHHCCCEEeCcchhhCCCcCCCCHHHHhhhhhhhhhccCcccChHHHHHHHHHHHHhcCccCCCcccccccCCHHHHH
Confidence 1112456999999963 25567899999987531100 0 000112233567889999999632369999999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 168 RLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 168 rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||+|||||+.+|++|||||||+|||+.+++.++++|.++++ +.|||++|||++++..+||++++|++|+++..+
T Consensus 413 rv~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~~sHd~~~~~~~~d~v~~l~~G~i~~~~ 487 (506)
T PRK13549 413 KAVLAKCLLLNPKILILDEPTRGIDVGAKYEIYKLINQLVQQGVAIIVISSELPEVLGLSDRVLVMHEGKLKGDL 487 (506)
T ss_pred HHHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEe
Confidence 99999999999999999999999999999999999999864 689999999999999999999999999998754
|
|
| >COG4598 HisP ABC-type histidine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-52 Score=331.60 Aligned_cols=223 Identities=29% Similarity=0.411 Sum_probs=189.3
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCC---C
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNS---P 91 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~---~ 91 (245)
++.|+++|+.|+|+. ..+|++|||+-++|+++.|||.|||||||+||||+=|.+|+.|.|.++|+.+.-..... .
T Consensus 4 ~~~l~v~dlHK~~G~--~eVLKGvSL~A~~GdVisIIGsSGSGKSTfLRCiN~LE~P~~G~I~v~geei~~k~~~~G~l~ 81 (256)
T COG4598 4 ENALEVEDLHKRYGE--HEVLKGVSLQANAGDVISIIGSSGSGKSTFLRCINFLEKPSAGSIRVNGEEIRLKRDKDGQLK 81 (256)
T ss_pred ccceehhHHHhhccc--chhhcceeeecCCCCEEEEecCCCCchhHHHHHHHhhcCCCCceEEECCeEEEeeeCCCCCee
Confidence 456999999999975 46899999999999999999999999999999999999999999999999874221110 0
Q ss_pred C------CCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHH
Q 035832 92 E------PLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGY 165 (245)
Q Consensus 92 ~------~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq 165 (245)
. ...|.++|+|||+++ +|..+||.||+.-+ +..... ..+.+..++++.+|..+|+.+. .+.||..|||||
T Consensus 82 ~ad~~q~~r~Rs~L~mVFQ~FN-LWsHmtvLeNViEa-PvhVLg-~~k~ea~e~Ae~~L~kVGi~ek-~~~YP~~LSGGQ 157 (256)
T COG4598 82 PADKRQLQRLRTRLGMVFQHFN-LWSHMTVLENVIEA-PVHVLG-VSKAEAIERAEKYLAKVGIAEK-ADAYPAHLSGGQ 157 (256)
T ss_pred eCCHHHHHHHHHHhhHhhhhcc-hhHHHHHHHHHHhc-chHhhc-CCHHHHHHHHHHHHHHhCchhh-hhcCccccCchH
Confidence 1 112457999999984 89999999999875 221111 1244556778899999999986 689999999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEeccCC
Q 035832 166 KRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQRIP 244 (245)
Q Consensus 166 kqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~~~ 244 (245)
+||++|||||+.+|+++|+|||||+|||+-.-++++.++++++ +.|++++||.|.++...+.+|++|++|.+ .++++|
T Consensus 158 QQR~aIARaLameP~vmLFDEPTSALDPElVgEVLkv~~~LAeEgrTMv~VTHEM~FAR~Vss~v~fLh~G~i-EE~G~P 236 (256)
T COG4598 158 QQRVAIARALAMEPEVMLFDEPTSALDPELVGEVLKVMQDLAEEGRTMVVVTHEMGFARDVSSHVIFLHQGKI-EEEGPP 236 (256)
T ss_pred HHHHHHHHHHhcCCceEeecCCcccCCHHHHHHHHHHHHHHHHhCCeEEEEeeehhHHHhhhhheEEeeccee-cccCCh
Confidence 9999999999999999999999999999999999999999985 69999999999999999999999999876 444444
|
|
| >PRK13538 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-51 Score=339.55 Aligned_cols=201 Identities=27% Similarity=0.325 Sum_probs=173.2
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
||+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ...+
T Consensus 1 ~l~~~~l~~~~~~--~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~p~~G~v~~~g~~~~~~~-----~~~~ 73 (204)
T PRK13538 1 MLEARNLACERDE--RILFSGLSFTLNAGELVQIEGPNGAGKTSLLRILAGLARPDAGEVLWQGEPIRRQR-----DEYH 73 (204)
T ss_pred CeEEEEEEEEECC--EEEEecceEEECCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccch-----HHhh
Confidence 5899999999964 46999999999999999999999999999999999999999999999998864321 1234
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
++++|++|++. +++..|+.||+.+..... .. .....+.++++.+|+.+. .++++.+||||||||++|||||+
T Consensus 74 ~~~~~~~~~~~-~~~~~tv~e~l~~~~~~~-~~-----~~~~~~~~~l~~~gl~~~-~~~~~~~LS~G~~qrl~la~al~ 145 (204)
T PRK13538 74 QDLLYLGHQPG-IKTELTALENLRFYQRLH-GP-----GDDEALWEALAQVGLAGF-EDVPVRQLSAGQQRRVALARLWL 145 (204)
T ss_pred hheEEeCCccc-cCcCCcHHHHHHHHHHhc-Cc-----cHHHHHHHHHHHcCCHHH-hhCChhhcCHHHHHHHHHHHHHh
Confidence 67999999974 566789999998752111 10 123457788999999875 68999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEE
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRM 232 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l 232 (245)
.+|+++||||||++||+.+++.++++|+++++ +.|||++|||++++..+.+|++++
T Consensus 146 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~~~~~~~~~ 202 (204)
T PRK13538 146 TRAPLWILDEPFTAIDKQGVARLEALLAQHAEQGGMVILTTHQDLPVASDKVRKLRL 202 (204)
T ss_pred cCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecChhhhccCCceEEec
Confidence 99999999999999999999999999999864 589999999999998888888877
|
|
| >PRK14246 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-50 Score=346.66 Aligned_cols=223 Identities=26% Similarity=0.345 Sum_probs=181.8
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCC-CCCC-CC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDG-EPNN-SP 91 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~-~~~~-~~ 91 (245)
..++|.++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.-... .+.. ..
T Consensus 7 ~~~~i~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~iaG~~~~~~G~v~~~G~~~~~g~~~~~~~ 84 (257)
T PRK14246 7 AEDVFNISRLYLYIND--KAILKDITIKIPNNSIFGIMGPSGSGKSTLLKVLNRLIEIYDSKIKVDGKVLYFGKDIFQID 84 (257)
T ss_pred hhhheeeeeEEEecCC--ceeEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCcCceeEcCEEEECCcccccCC
Confidence 5678999999999974 569999999999999999999999999999999999999999877777642110 0000 01
Q ss_pred CCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC---ccCCCCCCCCChHHHHH
Q 035832 92 EPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG---TSLDKDPHSLSGGYKRR 168 (245)
Q Consensus 92 ~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqr 168 (245)
...+++.++|+||++. +++..|+.+|+.++.... ... ........+.++++.+++.. ...++.+..||+|||||
T Consensus 85 ~~~~~~~i~~~~q~~~-~~~~~tv~~nl~~~~~~~-~~~-~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~LS~G~~qr 161 (257)
T PRK14246 85 AIKLRKEVGMVFQQPN-PFPHLSIYDNIAYPLKSH-GIK-EKREIKKIVEECLRKVGLWKEVYDRLNSPASQLSGGQQQR 161 (257)
T ss_pred HHHHhcceEEEccCCc-cCCCCcHHHHHHHHHHhc-CCC-CHHHHHHHHHHHHHHcCCCccchhhhcCCcccCCHHHHHH
Confidence 1123567999999985 566789999998763211 111 11223345778899999853 12578999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 169 LALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 169 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
++|||||+.+|+++||||||+|||+.+++.+.+.|.++.++.|||++||+++++..+||++++|++|+++..+
T Consensus 162 l~laral~~~P~llllDEPt~~LD~~~~~~l~~~l~~~~~~~tiilvsh~~~~~~~~~d~v~~l~~g~i~~~g 234 (257)
T PRK14246 162 LTIARALALKPKVLLMDEPTSMIDIVNSQAIEKLITELKNEIAIVIVSHNPQQVARVADYVAFLYNGELVEWG 234 (257)
T ss_pred HHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCcEEEEEECCHHHHHHhCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999999999876789999999999999999999999999998754
|
|
| >TIGR01184 ntrCD nitrate transport ATP-binding subunits C and D | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-50 Score=343.72 Aligned_cols=195 Identities=31% Similarity=0.444 Sum_probs=165.8
Q ss_pred eeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCccc
Q 035832 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADN 114 (245)
Q Consensus 35 l~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~t 114 (245)
|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ...+|+||++. +++..|
T Consensus 1 l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~---------~~~~~v~q~~~-l~~~~t 70 (230)
T TIGR01184 1 LKGVNLTIQQGEFISLIGHSGCGKSTLLNLISGLAQPTSGGVILEGKQITEPG---------PDRMVVFQNYS-LLPWLT 70 (230)
T ss_pred CCceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCC---------hhheEEecCcc-cCCCCC
Confidence 57999999999999999999999999999999999999999999998764311 12489999984 566789
Q ss_pred HHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH
Q 035832 115 VLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWK 194 (245)
Q Consensus 115 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~ 194 (245)
+.||+.++........ ........+.++++.+++.+. .++++.+||||||||++|||||+.+|++|||||||+|||+.
T Consensus 71 v~e~l~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgG~~qrv~la~al~~~p~lllLDEPt~gLD~~ 148 (230)
T TIGR01184 71 VRENIALAVDRVLPDL-SKSERRAIVEEHIALVGLTEA-ADKRPGQLSGGMKQRVAIARALSIRPKVLLLDEPFGALDAL 148 (230)
T ss_pred HHHHHHHHHHhcccCC-CHHHHHHHHHHHHHHcCCHHH-HcCChhhCCHHHHHHHHHHHHHHcCCCEEEEcCCCcCCCHH
Confidence 9999987521100011 122234457889999999864 69999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 195 ARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 195 ~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+++.++++|.++.+ +.|||++|||++++..+||++++|++|+++..+
T Consensus 149 ~~~~l~~~l~~~~~~~~~tii~~sH~~~~~~~~~d~v~~l~~G~i~~~~ 197 (230)
T TIGR01184 149 TRGNLQEELMQIWEEHRVTVLMVTHDVDEALLLSDRVVMLTNGPAANIG 197 (230)
T ss_pred HHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCcEeccc
Confidence 99999999999853 589999999999999999999999999997654
|
This model describes the ATP binding subunits of nitrate transport in bacteria and archaea. This protein belongs to the ATP-binding cassette (ABC) superfamily. It is thought that the two subunits encoded by ntrC and ntrD form the binding surface for interaction with ATP. This model is restricted in identifying ATP binding subunit associated with the nitrate transport. Nitrate assimilation is aided by other proteins derived from the operon which among others include products of ntrA - a regulatory protein; ntrB - a hydropbobic transmembrane permease and narB - a reductase. |
| >COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.4e-51 Score=390.98 Aligned_cols=218 Identities=28% Similarity=0.446 Sum_probs=182.5
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
-++++||+|+|+....++|+|+||+|++||.+||+|+||||||||+|+|+|+++|++|+|.+||.|+...+. ..+|
T Consensus 471 ~I~~~nvsf~y~~~~~~vL~~isL~I~~Ge~vaIvG~SGsGKSTL~KLL~gly~p~~G~I~~dg~dl~~i~~----~~lR 546 (709)
T COG2274 471 EIEFENVSFRYGPDDPPVLEDLSLEIPPGEKVAIVGRSGSGKSTLLKLLLGLYKPQQGRILLDGVDLNDIDL----ASLR 546 (709)
T ss_pred eEEEEEEEEEeCCCCcchhhceeEEeCCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEeHHhcCH----HHHH
Confidence 499999999998765579999999999999999999999999999999999999999999999999876432 2357
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
++||||+|++ .++..|++||+.++.+......-........+.+.+..+ |.+.. .......||||||||++||||
T Consensus 547 ~~ig~V~Q~~--~Lf~gSI~eNi~l~~p~~~~e~i~~A~~~ag~~~fI~~lP~gy~t~-v~E~G~~LSGGQrQrlalARa 623 (709)
T COG2274 547 RQVGYVLQDP--FLFSGSIRENIALGNPEATDEEIIEAAQLAGAHEFIENLPMGYDTP-VGEGGANLSGGQRQRLALARA 623 (709)
T ss_pred hheeEEcccc--hhhcCcHHHHHhcCCCCCCHHHHHHHHHHhCcHHHHHhcccccccc-cccCCCCCCHHHHHHHHHHHH
Confidence 8999999998 466889999999985543211101111112234444443 55543 577788999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
|+++|++||||||||+||+.+.+.+.+.|.++..++|+|+|||++..+ +.|||+++|++|+++.+++
T Consensus 624 Ll~~P~ILlLDEaTSaLD~~sE~~I~~~L~~~~~~~T~I~IaHRl~ti-~~adrIiVl~~Gkiv~~gs 690 (709)
T COG2274 624 LLSKPKILLLDEATSALDPETEAIILQNLLQILQGRTVIIIAHRLSTI-RSADRIIVLDQGKIVEQGS 690 (709)
T ss_pred hccCCCEEEEeCcccccCHhHHHHHHHHHHHHhcCCeEEEEEccchHh-hhccEEEEccCCceeccCC
Confidence 999999999999999999999999999999999889999999999876 5799999999999988664
|
|
| >PRK15134 microcin C ABC transporter ATP-binding protein YejF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-51 Score=383.14 Aligned_cols=225 Identities=27% Similarity=0.351 Sum_probs=183.7
Q ss_pred CcceEEEEeEEEECCC---------CccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCC
Q 035832 14 DYSCLEVRDVSYRPPG---------TQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNND 84 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~---------~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~ 84 (245)
+.++|+++|++++|+. +.+.+|+++||+|++||+++|+||||||||||+|+|+|+++ ++|+|+++|+++.
T Consensus 272 ~~~~l~~~~l~~~~~~~~~~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~-~~G~i~~~g~~i~ 350 (529)
T PRK15134 272 ASPLLDVEQLQVAFPIRKGILKRTVDHNVVVKNISFTLRPGETLGLVGESGSGKSTTGLALLRLIN-SQGEIWFDGQPLH 350 (529)
T ss_pred CCCcccccCcEEEeecCccccccccccceeeecceeEEcCCCEEEEECCCCCCHHHHHHHHhCcCC-CCcEEEECCEEcc
Confidence 4568999999999952 12469999999999999999999999999999999999995 8999999998875
Q ss_pred CCCCCCCCCCCCCcEEEEecCCC-CCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCCh
Q 035832 85 GEPNNSPEPLPPEKVGIVFQFPE-RYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSG 163 (245)
Q Consensus 85 ~~~~~~~~~~~~~~i~~v~Q~~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg 163 (245)
..+.... ..+++++||+||++. .+++..||.+|+.++........ .......++.++++.+++.....++++.+|||
T Consensus 351 ~~~~~~~-~~~~~~i~~v~q~~~~~l~~~~tv~e~l~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg 428 (529)
T PRK15134 351 NLNRRQL-LPVRHRIQVVFQDPNSSLNPRLNVLQIIEEGLRVHQPTL-SAAQREQQVIAVMEEVGLDPETRHRYPAEFSG 428 (529)
T ss_pred ccchhhH-HHhhhceEEEEeCchhhcCCcccHHHHHHHHHHhccccC-ChHHHHHHHHHHHHHcCCCHHHHhcCCccCCH
Confidence 3221100 012457999999973 35567899999987521110000 11223356788999999973236899999999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 164 GYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 164 Gqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||||||+|||||+.+|++|||||||+|||+.+++.++++|+++++ +.|||++|||++++..+||++++|++|+++..+
T Consensus 429 G~~qrv~la~al~~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~ 508 (529)
T PRK15134 429 GQRQRIAIARALILKPSLIILDEPTSSLDKTVQAQILALLKSLQQKHQLAYLFISHDLHVVRALCHQVIVLRQGEVVEQG 508 (529)
T ss_pred HHHHHHHHHHHHhCCCCEEEeeCCccccCHHHHHHHHHHHHHHHHhhCCEEEEEeCCHHHHHHhcCeEEEEECCEEEEEc
Confidence 999999999999999999999999999999999999999999863 589999999999999999999999999998654
|
|
| >TIGR02633 xylG D-xylose ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-50 Score=379.55 Aligned_cols=224 Identities=24% Similarity=0.235 Sum_probs=183.9
Q ss_pred cceEEEEeEEEECCC-CccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-CcceEEEcCccCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPG-TQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP-TSGSINIRGYNNDGEPNNSPE 92 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~-~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~ 92 (245)
.++|+++|++++|++ +.+.+|+|+||+|++||+++|+||||||||||+|+|+|+++| ++|+|.++|+++..... .
T Consensus 255 ~~~l~~~~l~~~~~~~~~~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~~G~i~~~g~~~~~~~~---~ 331 (500)
T TIGR02633 255 DVILEARNLTCWDVINPHRKRVDDVSFSLRRGEILGVAGLVGAGRTELVQALFGAYPGKFEGNVFINGKPVDIRNP---A 331 (500)
T ss_pred CceEEEeCCcccccccccccccccceeEEeCCcEEEEeCCCCCCHHHHHHHHhCCCCCCCCeEEEECCEECCCCCH---H
Confidence 458999999999942 124689999999999999999999999999999999999995 89999999987742110 1
Q ss_pred CCCCCcEEEEecCCC--CCCCcccHHHHHHhcCCCCCCc--hhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHH
Q 035832 93 PLPPEKVGIVFQFPE--RYFVADNVLDEVIFGWPRQSGS--IQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRR 168 (245)
Q Consensus 93 ~~~~~~i~~v~Q~~~--~~~~~~tv~e~l~~~~~~~~~~--~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqr 168 (245)
..+++++||+||++. .+++.+|+.+|+.++....... ..........+.++++.+++.....++++.+||||||||
T Consensus 332 ~~~~~~i~~v~q~~~~~~l~~~~tv~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqr 411 (500)
T TIGR02633 332 QAIRAGIAMVPEDRKRHGIVPILGVGKNITLSVLKSFCFKMRIDAAAELQIIGSAIQRLKVKTASPFLPIGRLSGGNQQK 411 (500)
T ss_pred HHHhCCCEEcCcchhhCCcCCCCCHHHHhcchhhhhhccCCcCCHHHHHHHHHHHHHhcCccCCCccCccccCCHHHHHH
Confidence 122467999999963 3567789999998752110000 001122345678899999996423689999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 169 LALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 169 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|+|||||+.+|++|||||||+|||+.+++.++++|+++++ +.|||++|||++++..+||++++|++|+++.+.
T Consensus 412 v~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~v~~l~~G~i~~~~ 485 (500)
T TIGR02633 412 AVLAKMLLTNPRVLILDEPTRGVDVGAKYEIYKLINQLAQEGVAIIVVSSELAEVLGLSDRVLVIGEGKLKGDF 485 (500)
T ss_pred HHHHHHHhhCCCEEEEcCCCCCcCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEE
Confidence 9999999999999999999999999999999999999864 689999999999999999999999999998754
|
Several bacterial species have enzymes xylose isomerase and xylulokinase enzymes for xylose utilization. Members of this protein family are the ATP-binding cassette (ABC) subunit of the known or predicted high-affinity xylose ABC transporter for xylose import. These genes, which closely resemble other sugar transport ABC transporter genes, typically are encoded near xylose utilization enzymes and regulatory proteins. Note that this form of the transporter contains two copies of the ABC transporter domain (pfam00005). |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-50 Score=377.88 Aligned_cols=222 Identities=30% Similarity=0.407 Sum_probs=181.7
Q ss_pred CcceEEEEeEEEECCC---CccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEc-Ccc---CCCC
Q 035832 14 DYSCLEVRDVSYRPPG---TQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIR-GYN---NDGE 86 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~---~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~-g~~---~~~~ 86 (245)
+.+||+++|++++|++ +.+++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++ |.+ +...
T Consensus 276 ~~~~l~~~~l~~~~~~~~~~~~~il~~is~~i~~Ge~~~l~G~NGsGKSTLl~~l~Gl~~p~~G~i~~~~g~~~~~~~~~ 355 (520)
T TIGR03269 276 GEPIIKVRNVSKRYISVDRGVVKAVDNVSLEVKEGEIFGIVGTSGAGKTTLSKIIAGVLEPTSGEVNVRVGDEWVDMTKP 355 (520)
T ss_pred CCceEEEeccEEEeccCCCCCceEEeeEEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEEecCCcccccccc
Confidence 3568999999999952 22469999999999999999999999999999999999999999999996 542 2111
Q ss_pred CCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCc----cCCCCCCCCC
Q 035832 87 PNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGT----SLDKDPHSLS 162 (245)
Q Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----~~~~~~~~LS 162 (245)
.... ....++++||+||++. +++.+|+.+|+.+.... .. .......++.++++.+++.+. .+++++.+||
T Consensus 356 ~~~~-~~~~~~~i~~v~q~~~-l~~~~tv~e~l~~~~~~--~~--~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~LS 429 (520)
T TIGR03269 356 GPDG-RGRAKRYIGILHQEYD-LYPHRTVLDNLTEAIGL--EL--PDELARMKAVITLKMVGFDEEKAEEILDKYPDELS 429 (520)
T ss_pred chhh-HHHHhhhEEEEccCcc-cCCCCcHHHHHHHHHHc--CC--CHHHHHHHHHHHHHhCCCCCccchhhhhCChhhCC
Confidence 0000 0012457999999974 66778999999874211 11 112223467789999999741 2589999999
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-c-CceEEEEecChhHHHhhccEEEEEeCCeEEEe
Q 035832 163 GGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLK-K-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240 (245)
Q Consensus 163 gGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~ 240 (245)
|||||||+|||||+.+|++|||||||+|||+.+++.++++|++++ + +.|||++|||++++..+||++++|++|+++..
T Consensus 430 gGq~qrv~laral~~~p~lLllDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~ 509 (520)
T TIGR03269 430 EGERHRVALAQVLIKEPRIVILDEPTGTMDPITKVDVTHSILKAREEMEQTFIIVSHDMDFVLDVCDRAALMRDGKIVKI 509 (520)
T ss_pred HHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCcEEEEEeCCHHHHHHhCCEEEEEECCEEEEE
Confidence 999999999999999999999999999999999999999999985 3 58999999999999999999999999999875
Q ss_pred c
Q 035832 241 Q 241 (245)
Q Consensus 241 ~ 241 (245)
+
T Consensus 510 g 510 (520)
T TIGR03269 510 G 510 (520)
T ss_pred C
Confidence 4
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK14263 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-49 Score=343.73 Aligned_cols=218 Identities=25% Similarity=0.344 Sum_probs=181.4
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CcceEEEcCccCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP-----TSGSINIRGYNNDGEPN 88 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~~~~~~ 88 (245)
.++.+.+++++++|++ .++|+|+||+|++||+++|+||||||||||+++|+|+++| ++|+|+++|+++.....
T Consensus 5 ~~~~~~~~~~~~~~~~--~~~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~~G~i~~~g~~i~~~~~ 82 (261)
T PRK14263 5 APIVMDCKLDKIFYGN--FMAVRDSHVPIRKNEITGFIGPSGCGKSTVLRSLNRMNDLVKGFRFEGHVHFLGQDVYGKGV 82 (261)
T ss_pred CCceEEEEeEEEEeCC--EEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcccccccCCCCceEEEECCEecccccc
Confidence 3557999999999964 5699999999999999999999999999999999999986 79999999998743211
Q ss_pred CCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCc---cCCCCCCCCChHH
Q 035832 89 NSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGT---SLDKDPHSLSGGY 165 (245)
Q Consensus 89 ~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGq 165 (245)
. ...+++.++|+||++. ++ ..|+.||+.++.... .. .......+.++++.+++.+. ..++++.+|||||
T Consensus 83 ~--~~~~~~~i~~v~q~~~-~~-~~tv~enl~~~~~~~-~~---~~~~~~~~~~~l~~~~l~~~i~~~~~~~~~~LS~G~ 154 (261)
T PRK14263 83 D--PVVVRRYIGMVFQQPN-PF-SMSIFDNVAFGLRLN-RY---KGDLGDRVKHALQGAALWDEVKDKLKVSGLSLSGGQ 154 (261)
T ss_pred c--hHhhhhceEEEecCCc-cc-cccHHHHHHHHHhhc-Cc---hHHHHHHHHHHHHHcCCchhhhhhhhCCcccCCHHH
Confidence 1 1123567999999984 44 689999998763211 11 11223467788999998531 2367889999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEe--------CCeE
Q 035832 166 KRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMD--------MGGF 237 (245)
Q Consensus 166 kqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~--------~G~i 237 (245)
+||++|||||+.+|++|||||||+|||+.++.+++++|+++.++.|||++||+++++..+||++++|+ +|++
T Consensus 155 ~qrv~laral~~~p~llllDEPtsgLD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~~~d~v~~l~~~~~~~~~~G~i 234 (261)
T PRK14263 155 QQRLCIARAIATEPEVLLLDEPCSALDPIATRRVEELMVELKKDYTIALVTHNMQQAIRVADTTAFFSVDISQGTRTGYL 234 (261)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEecccccccCCceE
Confidence 99999999999999999999999999999999999999999767899999999999999999999996 7999
Q ss_pred EEec
Q 035832 238 LVEQ 241 (245)
Q Consensus 238 ~~~~ 241 (245)
+..+
T Consensus 235 ~~~g 238 (261)
T PRK14263 235 VEMG 238 (261)
T ss_pred EEeC
Confidence 8754
|
|
| >PRK11174 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-50 Score=383.47 Aligned_cols=215 Identities=29% Similarity=0.409 Sum_probs=175.3
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
-|+++||++.|.++ +++|+|+||+|++|+.+||+||||||||||+++|+|++ |++|+|.++|.++...+. ..++
T Consensus 349 ~i~~~~vsf~~~~~-~~vL~~i~l~i~~G~~vaIvG~SGsGKSTL~~lL~g~~-p~~G~I~i~g~~i~~~~~----~~lr 422 (588)
T PRK11174 349 TIEAEDLEILSPDG-KTLAGPLNFTLPAGQRIALVGPSGAGKTSLLNALLGFL-PYQGSLKINGIELRELDP----ESWR 422 (588)
T ss_pred eEEEEeeEEeccCC-CeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCC-CCCcEEEECCEecccCCH----HHHH
Confidence 49999999766543 57999999999999999999999999999999999999 999999999998865432 2346
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
++|+||+|+|. +++.|++||+.++.+......-........+.+.++.+ |++.. .......||||||||++||||
T Consensus 423 ~~i~~v~Q~~~--LF~~TI~eNI~~g~~~~~~eei~~al~~a~l~~~i~~lp~G~dT~-vge~G~~LSGGQrQRialARA 499 (588)
T PRK11174 423 KHLSWVGQNPQ--LPHGTLRDNVLLGNPDASDEQLQQALENAWVSEFLPLLPQGLDTP-IGDQAAGLSVGQAQRLALARA 499 (588)
T ss_pred hheEEecCCCc--CCCcCHHHHhhcCCCCCCHHHHHHHHHHhCHHHHHHhcccccccc-cccCCCCCCHHHHHHHHHHHH
Confidence 78999999983 45789999999974321110000011111234445555 55543 466678899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|+.+|++||||||||+||+++.+.+.+.|.++.+++|+|+|||+++.+. .||+|++|++|+++..+
T Consensus 500 ll~~~~IliLDE~TSaLD~~te~~i~~~l~~~~~~~TvIiItHrl~~i~-~aD~Iivl~~G~i~e~G 565 (588)
T PRK11174 500 LLQPCQLLLLDEPTASLDAHSEQLVMQALNAASRRQTTLMVTHQLEDLA-QWDQIWVMQDGQIVQQG 565 (588)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEecChHHHH-hCCEEEEEeCCeEeecC
Confidence 9999999999999999999999999999999887899999999998765 69999999999998754
|
|
| >cd03369 ABCC_NFT1 Domain 2 of NFT1 (New full-length MRP-type transporter 1) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-50 Score=336.31 Aligned_cols=201 Identities=26% Similarity=0.317 Sum_probs=167.5
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
..|+++|++++|++...++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ...
T Consensus 5 ~~l~~~~l~~~~~~~~~~~l~~isl~i~~G~~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~~~g~~~~~~~~----~~~ 80 (207)
T cd03369 5 GEIEVENLSVRYAPDLPPVLKNVSFKVKAGEKIGIVGRTGAGKSTLILALFRFLEAEEGKIEIDGIDISTIPL----EDL 80 (207)
T ss_pred CeEEEEEEEEEeCCCCcccccCceEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCeEEECCEEhHHCCH----HHH
Confidence 3599999999997433469999999999999999999999999999999999999999999999987643211 112
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
++.++|+||++. ++ ..|+.+|+.+.. . .. . +.+.++++ .++++.+|||||+||++|||||
T Consensus 81 ~~~i~~v~q~~~-~~-~~tv~~~l~~~~-~--~~---~----~~~~~~l~--------~~~~~~~LS~G~~qrv~laral 140 (207)
T cd03369 81 RSSLTIIPQDPT-LF-SGTIRSNLDPFD-E--YS---D----EEIYGALR--------VSEGGLNLSQGQRQLLCLARAL 140 (207)
T ss_pred HhhEEEEecCCc-cc-CccHHHHhcccC-C--CC---H----HHHHHHhh--------ccCCCCcCCHHHHHHHHHHHHH
Confidence 467999999984 44 469999997531 1 00 1 11223332 2567899999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+.+|+++||||||++||+.+++.++++|+++.++.|+|++||+++++.. ||++++|++|+++..+
T Consensus 141 ~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~tiii~th~~~~~~~-~d~v~~l~~g~i~~~g 205 (207)
T cd03369 141 LKRPRVLVLDEATASIDYATDALIQKTIREEFTNSTILTIAHRLRTIID-YDKILVMDAGEVKEYD 205 (207)
T ss_pred hhCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHhh-CCEEEEEECCEEEecC
Confidence 9999999999999999999999999999998667899999999999865 9999999999987654
|
NFT1 belongs to the MRP (mulrtidrug resisitance-associated protein) family of ABC transporters. Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions such as glutathione, glucuronate, and sulfate. |
| >PRK09700 D-allose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-50 Score=378.43 Aligned_cols=219 Identities=21% Similarity=0.315 Sum_probs=181.3
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
.++|+++|+++.|. .+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...+. ...
T Consensus 263 ~~~l~~~~l~~~~~----~~l~~isl~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~p~~G~I~~~g~~~~~~~~---~~~ 335 (510)
T PRK09700 263 ETVFEVRNVTSRDR----KKVRDISFSVCRGEILGFAGLVGSGRTELMNCLFGVDKRAGGEIRLNGKDISPRSP---LDA 335 (510)
T ss_pred CcEEEEeCccccCC----CcccceeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCEECCCCCH---HHH
Confidence 45899999998763 37999999999999999999999999999999999999999999999987643110 011
Q ss_pred CCCcEEEEecCC--CCCCCcccHHHHHHhcCCCC---CC---chhHHHHHHHHHHHHHHHcCCC-CccCCCCCCCCChHH
Q 035832 95 PPEKVGIVFQFP--ERYFVADNVLDEVIFGWPRQ---SG---SIQLKEYLALNLQRAINWVGLD-GTSLDKDPHSLSGGY 165 (245)
Q Consensus 95 ~~~~i~~v~Q~~--~~~~~~~tv~e~l~~~~~~~---~~---~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~LSgGq 165 (245)
.++++||+||++ ..+++.+|+.+|+.++.... .. ...........+.++++.+++. +. .++++.+|||||
T Consensus 336 ~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~LSgGq 414 (510)
T PRK09700 336 VKKGMAYITESRRDNGFFPNFSIAQNMAISRSLKDGGYKGAMGLFHEVDEQRTAENQRELLALKCHS-VNQNITELSGGN 414 (510)
T ss_pred HHCCcEEccCccccCCCcCCCcHHHHhccccccccccccccccccChHHHHHHHHHHHHhcCCCCCC-ccCccccCChHH
Confidence 245799999984 23566789999998753210 00 0000112234577899999996 54 699999999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 166 KRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 166 kqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||||+|||||+.+|++|||||||+|||+.+++.++++|+++++ +.|||++|||++++..+||++++|++|+++...
T Consensus 415 ~qrv~lAral~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~g~tvi~vsHd~~~~~~~~d~i~~l~~G~i~~~~ 491 (510)
T PRK09700 415 QQKVLISKWLCCCPEVIIFDEPTRGIDVGAKAEIYKVMRQLADDGKVILMVSSELPEIITVCDRIAVFCEGRLTQIL 491 (510)
T ss_pred HHHHHHHHHHhcCCCEEEECCCCCCcCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEe
Confidence 9999999999999999999999999999999999999999864 689999999999999999999999999998654
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-50 Score=377.34 Aligned_cols=207 Identities=23% Similarity=0.250 Sum_probs=176.0
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
||+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++..... ..++
T Consensus 3 ~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G~~~p~~G~i~~~~~~~~~~~~----~~~~ 76 (490)
T PRK10938 3 SLQISQGTFRLSD--TKTLQLPSLTLNAGDSWAFVGANGSGKSALARALAGELPLLSGERQSQFSHITRLSF----EQLQ 76 (490)
T ss_pred eEEEEeEEEEcCC--eeecccceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCceEEECCcccccCCH----HHHH
Confidence 6999999999964 459999999999999999999999999999999999999999999998876532111 1123
Q ss_pred CcEEEEecCCCCCC-------CcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHH
Q 035832 97 EKVGIVFQFPERYF-------VADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRL 169 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~-------~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv 169 (245)
+.++|+||++...+ ...++.+++.++ .....++.++++.+++++. +++++.+|||||||||
T Consensus 77 ~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgG~~qrv 144 (490)
T PRK10938 77 KLVSDEWQRNNTDMLSPGEDDTGRTTAEIIQDE-----------VKDPARCEQLAQQFGITAL-LDRRFKYLSTGETRKT 144 (490)
T ss_pred HHhceeccCcchhhcccchhhccccHHHhcccc-----------hhHHHHHHHHHHHcCCHhh-hhCCcccCCHHHHHHH
Confidence 56999999864211 135777776532 0123457788999999875 6999999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 170 ALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 170 ~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+|||||+.+|++|||||||+|||+.+++.++++|+++++ +.|||++|||++++..+||++++|++|+++..+
T Consensus 145 ~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tvii~tH~~~~~~~~~d~v~~l~~G~i~~~~ 217 (490)
T PRK10938 145 LLCQALMSEPDLLILDEPFDGLDVASRQQLAELLASLHQSGITLVLVLNRFDEIPDFVQFAGVLADCTLAETG 217 (490)
T ss_pred HHHHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHhhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999999865 589999999999999999999999999998754
|
|
| >cd03231 ABC_CcmA_heme_exporter CcmA, the ATP-binding component of the bacterial CcmAB transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-50 Score=334.12 Aligned_cols=197 Identities=27% Similarity=0.339 Sum_probs=171.5
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|+++.|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.... ...++
T Consensus 1 l~i~~l~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-----~~~~~ 73 (201)
T cd03231 1 LEADELTCERDG--RALFSGLSFTLAAGEALQVTGPNGSGKTTLLRILAGLSPPLAGRVLLNGGPLDFQR-----DSIAR 73 (201)
T ss_pred CEEEEEEEEeCC--ceeeccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEeccccc-----HHhhh
Confidence 478999999964 46899999999999999999999999999999999999999999999998764211 12356
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ 177 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~ 177 (245)
+++|+||++. +++..|+.||+.+.... . ..+++.++++.+++.+. .++++.+||||||||++|||||+.
T Consensus 74 ~i~~~~q~~~-~~~~~tv~e~l~~~~~~--~-------~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrl~laral~~ 142 (201)
T cd03231 74 GLLYLGHAPG-IKTTLSVLENLRFWHAD--H-------SDEQVEEALARVGLNGF-EDRPVAQLSAGQQRRVALARLLLS 142 (201)
T ss_pred heEEeccccc-cCCCcCHHHHHHhhccc--c-------cHHHHHHHHHHcCChhh-hcCchhhCCHHHHHHHHHHHHHhc
Confidence 8999999974 56678999999875211 0 12356788999999875 689999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEE
Q 035832 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRM 232 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l 232 (245)
+|+++||||||++||+.+++.+.+.|+++.+ +.|+|++|||......+|++++.+
T Consensus 143 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~sH~~~~~~~~~~~~~~~ 198 (201)
T cd03231 143 GRPLWILDEPTTALDKAGVARFAEAMAGHCARGGMVVLTTHQDLGLSEAGARELDL 198 (201)
T ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchhhhhccceeEec
Confidence 9999999999999999999999999998864 689999999999999999999887
|
The CCM family is involved in bacterial cytochrome c biogenesis. Cytochrome c maturation in E. coli requires the ccm operon, which encodes eight membrane proteins (CcmABCDEFGH). CcmE is a periplasmic heme chaperone that binds heme covalently and transfers it onto apocytochrome c in the presence of CcmF, CcmG, and CcmH. The CcmAB proteins represent an ABC transporter and the CcmCD proteins participate in heme transfer to CcmE. |
| >TIGR03269 met_CoM_red_A2 methyl coenzyme M reductase system, component A2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.7e-50 Score=377.88 Aligned_cols=218 Identities=27% Similarity=0.350 Sum_probs=178.2
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCC--CCCcceEEEcC---------------
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLS--KPTSGSINIRG--------------- 80 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~--~p~~G~i~~~g--------------- 80 (245)
|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|++ +|++|+|.++|
T Consensus 1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~~~p~~G~i~~~~~~~~~~~~~~~~~~~ 78 (520)
T TIGR03269 1 IEVKNLTKKFDG--KEVLKNISFTIEEGEVLGILGRSGAGKSVLMHVLRGMDQYEPTSGRIIYHVALCEKCGYVERPSKV 78 (520)
T ss_pred CEEEEEEEEECC--eEeeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhhcccCCCCceEEEEecccccccccccccccc
Confidence 578999999964 46999999999999999999999999999999999997 79999999972
Q ss_pred --------ccCCC--CCCCC-C---CCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHH
Q 035832 81 --------YNNDG--EPNNS-P---EPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINW 146 (245)
Q Consensus 81 --------~~~~~--~~~~~-~---~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~ 146 (245)
.++.. ..... . ...+++.++|+||++..+++..|+++|+.++.... .. . ......++.++++.
T Consensus 79 g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~i~~v~q~~~~~~~~~tv~~~l~~~~~~~-~~-~-~~~~~~~~~~~l~~ 155 (520)
T TIGR03269 79 GEPCPVCGGTLEPEEVDFWNLSDKLRRRIRKRIAIMLQRTFALYGDDTVLDNVLEALEEI-GY-E-GKEAVGRAVDLIEM 155 (520)
T ss_pred ccccccccccccccchhhhccCHHHHHHhhhcEEEEeccccccCCCCCHHHHHHHHHHHc-CC-C-HHHHHHHHHHHHHH
Confidence 22110 00000 0 01124579999998434667789999998753211 11 1 12334568889999
Q ss_pred cCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-c-CceEEEEecChhHHHh
Q 035832 147 VGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLK-K-ELTILVVSHDLKEMAA 224 (245)
Q Consensus 147 ~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~-~~tiii~tHd~~~~~~ 224 (245)
+|+++. +++++.+|||||||||+|||||+.+|++|||||||++||+.+++.++++|+++. + +.|||+||||++++..
T Consensus 156 ~gl~~~-~~~~~~~LSgGq~qrv~iA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivtHd~~~~~~ 234 (520)
T TIGR03269 156 VQLSHR-ITHIARDLSGGEKQRVVLARQLAKEPFLFLADEPTGTLDPQTAKLVHNALEEAVKASGISMVLTSHWPEVIED 234 (520)
T ss_pred cCChhh-hhcCcccCCHHHHHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhcCcEEEEEeCCHHHHHH
Confidence 999875 699999999999999999999999999999999999999999999999999985 3 5899999999999999
Q ss_pred hccEEEEEeCCeEEEec
Q 035832 225 LVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 225 ~~d~v~~l~~G~i~~~~ 241 (245)
+||++++|++|+++..+
T Consensus 235 ~~d~i~~l~~G~i~~~g 251 (520)
T TIGR03269 235 LSDKAIWLENGEIKEEG 251 (520)
T ss_pred hcCEEEEEeCCEEeeec
Confidence 99999999999998653
|
The enzyme that catalyzes the final step in methanogenesis, methyl coenzyme M reductase, contains alpha, beta, and gamma chains. In older literature, the complex of alpha, beta, and gamma chains was termed component C, while this single chain protein was termed methyl coenzyme M reductase system component A2. |
| >PRK14266 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-49 Score=341.71 Aligned_cols=218 Identities=24% Similarity=0.427 Sum_probs=179.9
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCcceEEEcCccCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK-----PTSGSINIRGYNNDGEPNNS 90 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~~~~ 90 (245)
.+|+++||++.|++ +++|+|+||+|++||+++|+||||||||||+++|+|+.+ |++|+|.++|+++...+.
T Consensus 2 ~~l~~~~v~~~~~~--~~~l~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~~~~G~v~~~g~~i~~~~~-- 77 (250)
T PRK14266 2 YRIEVENLNTYFDD--AHILKNVNLDIPKNSVTALIGPSGCGKSTFIRTLNRMNDLIPGFRHEGHIYLDGVDIYDPAV-- 77 (250)
T ss_pred cEEEEEeEEEEeCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhhhccCCCCCCccEEEECCEEcccccc--
Confidence 36899999999964 469999999999999999999999999999999999874 489999999988743211
Q ss_pred CCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC---ccCCCCCCCCChHHHH
Q 035832 91 PEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG---TSLDKDPHSLSGGYKR 167 (245)
Q Consensus 91 ~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkq 167 (245)
.....+++++|+||++. .|. .|+.+|+.++...... .........+.++++.+++.+ ..+++++.+||+||||
T Consensus 78 ~~~~~~~~i~~~~q~~~-~~~-~t~~~nl~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~l~~~~~~~~~~LS~Gq~q 153 (250)
T PRK14266 78 DVVELRKKVGMVFQKPN-PFP-KSIFDNVAYGLRIHGE--DDEDFIEERVEESLKAAALWDEVKDKLDKSALGLSGGQQQ 153 (250)
T ss_pred cHHHHhhheEEEecCCc-cCc-chHHHHHHhHHhhcCC--CCHHHHHHHHHHHHHHcCCchhHHHHHhCCcccCCHHHHH
Confidence 01123567999999984 444 5999999875321110 011223456778888888742 1258889999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 168 RLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 168 rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|++|||||+.+|++|||||||+|||+.++..+.++|++++++.|||++||+++++..+||++++|++|+++..+
T Consensus 154 rv~laral~~~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~~~~~i~~l~~G~i~~~g 227 (250)
T PRK14266 154 RLCIARTIAVSPEVILMDEPCSALDPISTTKIEDLIHKLKEDYTIVIVTHNMQQATRVSKYTSFFLNGEIIESG 227 (250)
T ss_pred HHHHHHHHHcCCCEEEEcCCCccCCHHHHHHHHHHHHHHhcCCeEEEEECCHHHHHhhcCEEEEEECCeEEEeC
Confidence 99999999999999999999999999999999999999876789999999999999999999999999998654
|
|
| >PRK09580 sufC cysteine desulfurase ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-49 Score=340.22 Aligned_cols=219 Identities=22% Similarity=0.267 Sum_probs=173.6
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCC--CCCcceEEEcCccCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLS--KPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~--~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
||+++|+++.|++ +++|+|+||+|++|++++|+||||||||||+++|+|++ +|++|+|.++|.++..... ...
T Consensus 1 ~i~~~nl~~~~~~--~~~l~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~~~G~i~~~g~~~~~~~~---~~~ 75 (248)
T PRK09580 1 MLSIKDLHVSVED--KAILRGLNLEVRPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLLELSP---EDR 75 (248)
T ss_pred CeEEEEEEEEeCC--eeeeecceeEEcCCCEEEEECCCCCCHHHHHHHHcCCccCCCCceEEEECCCccccCCH---HHH
Confidence 5899999999974 46999999999999999999999999999999999995 6999999999987643211 111
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCC---CCCch-hHHHHHHHHHHHHHHHcCCCCccCCCCCC-CCChHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPR---QSGSI-QLKEYLALNLQRAINWVGLDGTSLDKDPH-SLSGGYKRRL 169 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~---~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~LSgGqkqrv 169 (245)
.+..++|++|++. .++..+..+++.+.... ..... .........+.++++.+++.+...++.+. +|||||||||
T Consensus 76 ~~~~i~~~~q~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~LS~G~~qrv 154 (248)
T PRK09580 76 AGEGIFMAFQYPV-EIPGVSNQFFLQTALNAVRSYRGQEPLDRFDFQDLMEEKIALLKMPEDLLTRSVNVGFSGGEKKRN 154 (248)
T ss_pred hhcceEEEecCch-hccchhHHHHHHHhhhhhhcccccccchHHHHHHHHHHHHHHcCCChhhcccCCCCCCCHHHHHHH
Confidence 2356999999974 44555655554322110 00000 01112244567888999995323567775 8999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhh-ccEEEEEeCCeEEEec
Q 035832 170 ALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAAL-VDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 170 ~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~-~d~v~~l~~G~i~~~~ 241 (245)
+|||||+.+|++|||||||++||+.+++.+.++|+++++ +.|||++|||++++..+ ||++++|++|+++..+
T Consensus 155 ~laral~~~p~illLDEPt~~LD~~~~~~l~~~l~~l~~~~~tiii~sH~~~~~~~~~~d~i~~l~~g~i~~~g 228 (248)
T PRK09580 155 DILQMAVLEPELCILDESDSGLDIDALKIVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRIVKSG 228 (248)
T ss_pred HHHHHHHcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHhhhCCEEEEEECCeEEEeC
Confidence 999999999999999999999999999999999999865 58999999999998887 8999999999998654
|
|
| >PRK14258 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-49 Score=342.94 Aligned_cols=218 Identities=28% Similarity=0.382 Sum_probs=179.2
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-----cceEEEcCccCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPT-----SGSINIRGYNNDGEPNNS 90 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~-----~G~i~~~g~~~~~~~~~~ 90 (245)
++|+++|++++|++ ..+|+|+||+|++||+++|+||||||||||+++|+|+++|+ +|+|.++|+++.....
T Consensus 6 ~~l~~~nl~~~~~~--~~il~~is~~i~~Ge~~~I~G~nGsGKSTLl~~l~Gl~~~~g~i~~~G~i~~~g~~i~~~~~-- 81 (261)
T PRK14258 6 PAIKVNNLSFYYDT--QKILEGVSMEIYQSKVTAIIGPSGCGKSTFLKCLNRMNELESEVRVEGRVEFFNQNIYERRV-- 81 (261)
T ss_pred ceEEEeeEEEEeCC--eeEeeceEEEEcCCcEEEEECCCCCCHHHHHHHHhcccCCCCCccccceEEECCEEhhcccc--
Confidence 47999999999964 36899999999999999999999999999999999999985 8999999987632111
Q ss_pred CCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC---ccCCCCCCCCChHHHH
Q 035832 91 PEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG---TSLDKDPHSLSGGYKR 167 (245)
Q Consensus 91 ~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkq 167 (245)
....+++.++|+||++. +++ .|+.||+.++.... .. .........+.++++.+++.+ ...++++.+|||||||
T Consensus 82 ~~~~~~~~i~~~~q~~~-l~~-~tv~enl~~~~~~~-~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~LSgGq~q 157 (261)
T PRK14258 82 NLNRLRRQVSMVHPKPN-LFP-MSVYDNVAYGVKIV-GW-RPKLEIDDIVESALKDADLWDEIKHKIHKSALDLSGGQQQ 157 (261)
T ss_pred chHHhhccEEEEecCCc-cCc-ccHHHHHHHHHHhc-CC-CcHHHHHHHHHHHHHHcCCcchhhhHhcCCcccCCHHHHH
Confidence 11123567999999975 555 89999998752111 10 011122345678888888743 1258899999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-c-CceEEEEecChhHHHhhccEEEEEeC-----CeEEEe
Q 035832 168 RLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLK-K-ELTILVVSHDLKEMAALVDHSWRMDM-----GGFLVE 240 (245)
Q Consensus 168 rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~-~~tiii~tHd~~~~~~~~d~v~~l~~-----G~i~~~ 240 (245)
|++|||||+.+|++|||||||+|||+.+++.+.+.|++++ + +.|||++|||++++..+||++++|++ |+++..
T Consensus 158 rv~laral~~~p~vllLDEP~~~LD~~~~~~l~~~l~~l~~~~~~tiiivsH~~~~i~~~~d~i~~l~~~~~~~G~i~~~ 237 (261)
T PRK14258 158 RLCIARALAVKPKVLLMDEPCFGLDPIASMKVESLIQSLRLRSELTMVIVSHNLHQVSRLSDFTAFFKGNENRIGQLVEF 237 (261)
T ss_pred HHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhcCEEEEEccCCCcCceEEEe
Confidence 9999999999999999999999999999999999999975 3 68999999999999999999999999 998765
Q ss_pred c
Q 035832 241 Q 241 (245)
Q Consensus 241 ~ 241 (245)
+
T Consensus 238 ~ 238 (261)
T PRK14258 238 G 238 (261)
T ss_pred C
Confidence 3
|
|
| >cd03215 ABC_Carb_Monos_II This family represents domain II of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-50 Score=329.28 Aligned_cols=178 Identities=29% Similarity=0.418 Sum_probs=156.7
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
.++|+++|++++| +|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++..... ...
T Consensus 2 ~~~l~~~~l~~~~------~l~~vs~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~---~~~ 72 (182)
T cd03215 2 EPVLEVRGLSVKG------AVRDVSFEVRAGEIVGIAGLVGNGQTELAEALFGLRPPASGEITLDGKPVTRRSP---RDA 72 (182)
T ss_pred CcEEEEeccEEEe------eecceEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCccCH---HHH
Confidence 4579999999988 7999999999999999999999999999999999999999999999988753211 112
Q ss_pred CCCcEEEEecCCC--CCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPE--RYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALA 172 (245)
Q Consensus 95 ~~~~i~~v~Q~~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iA 172 (245)
.+++++|+||++. .+++..|+.||+.+.. . ||||||||++||
T Consensus 73 ~~~~i~~~~q~~~~~~~~~~~t~~e~l~~~~---------~---------------------------LS~G~~qrl~la 116 (182)
T cd03215 73 IRAGIAYVPEDRKREGLVLDLSVAENIALSS---------L---------------------------LSGGNQQKVVLA 116 (182)
T ss_pred HhCCeEEecCCcccCcccCCCcHHHHHHHHh---------h---------------------------cCHHHHHHHHHH
Confidence 3467999999863 3456679999987631 0 999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeE
Q 035832 173 IQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGF 237 (245)
Q Consensus 173 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i 237 (245)
|||+.+|++|||||||+|||+.+++.+.+.|+++.+ +.|+|++||+++++..+||++++|++|++
T Consensus 117 ~al~~~p~llllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~v~~l~~G~i 182 (182)
T cd03215 117 RWLARDPRVLILDEPTRGVDVGAKAEIYRLIRELADAGKAVLLISSELDELLGLCDRILVMYEGRI 182 (182)
T ss_pred HHHccCCCEEEECCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEecCCcC
Confidence 999999999999999999999999999999999864 68999999999999999999999999874
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. In members of Carb_Monos family the single hydrophobic gene product forms a homodimer, while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >PRK14264 phosphate ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-49 Score=349.57 Aligned_cols=221 Identities=27% Similarity=0.419 Sum_probs=179.8
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-----CCcceEEEcCccCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK-----PTSGSINIRGYNNDGEPNN 89 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-----p~~G~i~~~g~~~~~~~~~ 89 (245)
.++|+++||+++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++.....
T Consensus 43 ~~~l~i~nl~~~~~~--~~iL~~is~~i~~Ge~~~IvG~nGsGKSTLl~~L~Gl~~~~~~~p~~G~I~i~g~~i~~~~~- 119 (305)
T PRK14264 43 DAKLSVEDLDVYYGD--DHALKGVSMDIPEKSVTALIGPSGCGKSTFLRCLNRMNDRIKAARIDGSVELDGQDIYQDGV- 119 (305)
T ss_pred CceEEEEEEEEEeCC--eeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccccccCCCCCceEEEECCEEcccccc-
Confidence 447999999999974 469999999999999999999999999999999999986 689999999988743111
Q ss_pred CCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCC----------chhHHHHHHHHHHHHHHHcCCCC---ccCCC
Q 035832 90 SPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSG----------SIQLKEYLALNLQRAINWVGLDG---TSLDK 156 (245)
Q Consensus 90 ~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~----------~~~~~~~~~~~~~~~l~~~~l~~---~~~~~ 156 (245)
.....+++++|+||++. +++ .|+++|+.++...... ...........+.++++.+++.. ...++
T Consensus 120 -~~~~~~~~i~~v~q~~~-l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 196 (305)
T PRK14264 120 -NLVELRKRVGMVFQSPN-PFP-KSIRENISYGPRKHGDINTGLLARLLGRDDKDAEDELVERSLRQAALWDEVNDRLDD 196 (305)
T ss_pred -cHHHHhhceEEEccCCc-ccc-ccHHHHHHhHHhhcccccccccccccccCchHHHHHHHHHHHHHcCCchhhhHHhcC
Confidence 01123467999999984 444 6999999875321100 00001122445778888888742 12588
Q ss_pred CCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEE-EEEeCC
Q 035832 157 DPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHS-WRMDMG 235 (245)
Q Consensus 157 ~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v-~~l~~G 235 (245)
++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.++|++++++.|||++||+++++..+||++ ++|++|
T Consensus 197 ~~~~LSgGq~qrv~LAraL~~~p~lLLLDEPtsgLD~~~~~~l~~~L~~~~~~~tiiivtH~~~~i~~~~d~i~~~l~~G 276 (305)
T PRK14264 197 NALGLSGGQQQRLCIARCLAVDPEVILMDEPASALDPIATSKIEDLIEELAEEYTVVVVTHNMQQAARISDQTAVFLTGG 276 (305)
T ss_pred ccccCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHhcCCEEEEEEcCHHHHHHhcCEEEEEecCC
Confidence 8999999999999999999999999999999999999999999999999976789999999999999999996 578999
Q ss_pred eEEEec
Q 035832 236 GFLVEQ 241 (245)
Q Consensus 236 ~i~~~~ 241 (245)
+++..+
T Consensus 277 ~i~~~g 282 (305)
T PRK14264 277 ELVEYD 282 (305)
T ss_pred EEEEeC
Confidence 998754
|
|
| >PRK09544 znuC high-affinity zinc transporter ATPase; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-49 Score=341.54 Aligned_cols=196 Identities=28% Similarity=0.404 Sum_probs=168.4
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
++|+++|++++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 3 ~~l~~~~l~~~~~~--~~vl~~vs~~i~~Ge~~~I~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~~--------------- 65 (251)
T PRK09544 3 SLVSLENVSVSFGQ--RRVLSDVSLELKPGKILTLLGPNGAGKSTLVRVVLGLVAPDEGVIKRNG--------------- 65 (251)
T ss_pred cEEEEeceEEEECC--ceEEEeEEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECC---------------
Confidence 47999999999974 4699999999999999999999999999999999999999999999864
Q ss_pred CCcEEEEecCCCCCCCc--ccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVA--DNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~--~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
+..++|+||++. ++.. .|+.+++.+. . .. ...++.++++.+++.+. .++++.+||||||||++|||
T Consensus 66 ~~~i~~v~q~~~-~~~~l~~~~~~~~~~~-~---~~------~~~~~~~~l~~~gl~~~-~~~~~~~LSgGq~qrv~lar 133 (251)
T PRK09544 66 KLRIGYVPQKLY-LDTTLPLTVNRFLRLR-P---GT------KKEDILPALKRVQAGHL-IDAPMQKLSGGETQRVLLAR 133 (251)
T ss_pred ccCEEEeccccc-cccccChhHHHHHhcc-c---cc------cHHHHHHHHHHcCChHH-HhCChhhCCHHHHHHHHHHH
Confidence 135999999974 3333 4777776542 1 00 11246678999999875 68999999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||+.+|++|||||||+|||+.++..++++|+++.+ +.|||++|||++++..+||++++|++ +++..+
T Consensus 134 al~~~p~lllLDEPt~~LD~~~~~~l~~~L~~~~~~~g~tiiivsH~~~~i~~~~d~i~~l~~-~i~~~g 202 (251)
T PRK09544 134 ALLNRPQLLVLDEPTQGVDVNGQVALYDLIDQLRRELDCAVLMVSHDLHLVMAKTDEVLCLNH-HICCSG 202 (251)
T ss_pred HHhcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEECC-ceEeeC
Confidence 99999999999999999999999999999999853 68999999999999999999999974 676543
|
|
| >cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-49 Score=324.05 Aligned_cols=172 Identities=38% Similarity=0.563 Sum_probs=153.9
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|++++|++ .++|+++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ..+++
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~-----~~~~~ 73 (173)
T cd03230 1 IEVRNLSKRYGK--KTALDDISLTVEKGEIYGLLGPNGAGKTTLIKIILGLLKPDSGEIKVLGKDIKKEP-----EEVKR 73 (173)
T ss_pred CEEEEEEEEECC--eeeeeeeEEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEcccch-----Hhhhc
Confidence 478999999964 46999999999999999999999999999999999999999999999998764321 12356
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ 177 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~ 177 (245)
.++|+||++. +++..|+.+|+. |||||+||++|||||+.
T Consensus 74 ~i~~~~q~~~-~~~~~tv~~~~~----------------------------------------LS~G~~qrv~laral~~ 112 (173)
T cd03230 74 RIGYLPEEPS-LYENLTVRENLK----------------------------------------LSGGMKQRLALAQALLH 112 (173)
T ss_pred cEEEEecCCc-cccCCcHHHHhh----------------------------------------cCHHHHHHHHHHHHHHc
Confidence 7999999984 555678887763 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeE
Q 035832 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGF 237 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i 237 (245)
+|+++||||||++||+.+++.+.++|+++.+ +.|+|++|||++++..+||++++|++|++
T Consensus 113 ~p~illlDEPt~~LD~~~~~~l~~~l~~~~~~g~tiii~th~~~~~~~~~d~i~~l~~g~i 173 (173)
T cd03230 113 DPELLILDEPTSGLDPESRREFWELLRELKKEGKTILLSSHILEEAERLCDRVAILNNGRI 173 (173)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEECCCHHHHHHhCCEEEEEeCCCC
Confidence 9999999999999999999999999999864 58999999999999999999999999874
|
In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03288 ABCC_SUR2 The SUR domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-49 Score=342.37 Aligned_cols=217 Identities=20% Similarity=0.243 Sum_probs=175.7
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
...|+++|++++|++..+.+|+++||+|++||+++|+|+||||||||+++|+|+++|++|+|+++|+++...+. ..
T Consensus 17 ~~~i~~~~l~~~~~~~~~~il~~isl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~~~G~i~i~g~~i~~~~~----~~ 92 (257)
T cd03288 17 GGEIKIHDLCVRYENNLKPVLKHVKAYIKPGQKVGICGRTGSGKSSLSLAFFRMVDIFDGKIVIDGIDISKLPL----HT 92 (257)
T ss_pred CceEEEEEEEEEeCCCCCcceeEEEEEEcCCCEEEEECCCCCCHHHHHHHHHcccCCCCCeEEECCEEhhhCCH----HH
Confidence 34699999999997533469999999999999999999999999999999999999999999999988753221 12
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHH-HHHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEY-LALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLAL 171 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~i 171 (245)
.++.++|+||++. ++ ..|+.+|+.... . ......... ....+.++++.+ +++.. .++.+.+||+||+||++|
T Consensus 93 ~~~~i~~v~q~~~-l~-~~tv~~nl~~~~-~-~~~~~~~~~l~~~~l~~~~~~~~~~l~~~-~~~~~~~LS~G~~qrl~l 167 (257)
T cd03288 93 LRSRLSIILQDPI-LF-SGSIRFNLDPEC-K-CTDDRLWEALEIAQLKNMVKSLPGGLDAV-VTEGGENFSVGQRQLFCL 167 (257)
T ss_pred HhhhEEEECCCCc-cc-ccHHHHhcCcCC-C-CCHHHHHHHHHHhCcHHHHhhcccccCcE-eccCCCcCCHHHHHHHHH
Confidence 3567999999984 44 469999986531 1 110000111 111244556666 67654 577889999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 172 AIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 172 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||||+.+|++|||||||+|||+.+++.++++++++.++.|||++||+++++.. ||++++|++|+++..+
T Consensus 168 aral~~~p~llllDEPt~gLD~~~~~~l~~~l~~~~~~~tiii~sh~~~~~~~-~dri~~l~~G~i~~~g 236 (257)
T cd03288 168 ARAFVRKSSILIMDEATASIDMATENILQKVVMTAFADRTVVTIAHRVSTILD-ADLVLVLSRGILVECD 236 (257)
T ss_pred HHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHhcCCCEEEEEecChHHHHh-CCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999988667999999999999875 9999999999998654
|
The sulfonylurea receptor SUR is an ATP binding cassette (ABC) protein of the ABCC/MRP family. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >cd03289 ABCC_CFTR2 The CFTR subfamily domain 2 | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-50 Score=349.60 Aligned_cols=206 Identities=24% Similarity=0.287 Sum_probs=174.3
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|++++|+++..++|+|+||+|++||+++|+||||||||||+++|+|+++ ++|+|+++|.++..... ..+++
T Consensus 3 i~~~nls~~~~~~~~~~l~~isl~I~~Ge~~~IvG~nGsGKSTLl~~L~gl~~-~~G~I~i~g~~i~~~~~----~~lr~ 77 (275)
T cd03289 3 MTVKDLTAKYTEGGNAVLENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGDIQIDGVSWNSVPL----QKWRK 77 (275)
T ss_pred EEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEhhhCCH----HHHhh
Confidence 78999999996434569999999999999999999999999999999999997 78999999998754221 12356
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCC-----------CChHHH
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHS-----------LSGGYK 166 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----------LSgGqk 166 (245)
+++|+||++. +| ..|+++|+..... .. .+.+.++++.+|+.+. .++++.. ||||||
T Consensus 78 ~i~~v~q~~~-lf-~~tv~~nl~~~~~---~~-------~~~~~~~l~~~gL~~~-~~~~p~~l~~~~~~~g~~LS~G~~ 144 (275)
T cd03289 78 AFGVIPQKVF-IF-SGTFRKNLDPYGK---WS-------DEEIWKVAEEVGLKSV-IEQFPGQLDFVLVDGGCVLSHGHK 144 (275)
T ss_pred hEEEECCCcc-cc-hhhHHHHhhhccC---CC-------HHHHHHHHHHcCCHHH-HHhCcccccceecCCCCCCCHHHH
Confidence 8999999985 44 4699999963211 11 1245667888899764 5777776 999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 167 RRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 167 qrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
||++||||++.+|++|||||||++||+.+++.+.+.|+++.+++|||+|||+++.+.. ||||++|++|+++..+.
T Consensus 145 qrl~LaRall~~p~illlDEpts~LD~~~~~~l~~~l~~~~~~~tii~isH~~~~i~~-~dri~vl~~G~i~~~g~ 219 (275)
T cd03289 145 QLMCLARSVLSKAKILLLDEPSAHLDPITYQVIRKTLKQAFADCTVILSEHRIEAMLE-CQRFLVIEENKVRQYDS 219 (275)
T ss_pred HHHHHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEECCHHHHHh-CCEEEEecCCeEeecCC
Confidence 9999999999999999999999999999999999999988667999999999998864 99999999999987553
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >TIGR02770 nickel_nikD nickel import ATP-binding protein NikD | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-49 Score=338.12 Aligned_cols=199 Identities=29% Similarity=0.402 Sum_probs=166.9
Q ss_pred eeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC----CcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCC-
Q 035832 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP----TSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPER- 108 (245)
Q Consensus 34 il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p----~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~- 108 (245)
+++|+||+|++||+++|+||||||||||+++|+|+++| ++|+|.++|+++... ..+++.++|+||++..
T Consensus 1 ~l~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~~~~~G~i~~~g~~~~~~------~~~~~~i~~~~q~~~~~ 74 (230)
T TIGR02770 1 LVQDLNLSLKRGEVLALVGESGSGKSLTCLAILGLLPPGLTQTSGEILLDGRPLLPL------SIRGRHIATIMQNPRTA 74 (230)
T ss_pred CccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCccCccccEEEECCEechhh------hhhhheeEEEecCchhh
Confidence 57999999999999999999999999999999999999 899999999887431 1123579999999842
Q ss_pred CCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC--ccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeC
Q 035832 109 YFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG--TSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDE 186 (245)
Q Consensus 109 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDE 186 (245)
+.+..|+.+|+.+..... ... ......++.++++.+++.+ ...++++.+|||||||||+|||||+.+|++|||||
T Consensus 75 ~~~~~t~~~~~~~~~~~~-~~~--~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~LS~G~~qrv~laral~~~p~vllLDE 151 (230)
T TIGR02770 75 FNPLFTMGNHAIETLRSL-GKL--SKQARALILEALEAVGLPDPEEVLKKYPFQLSGGMLQRVMIALALLLEPPFLIADE 151 (230)
T ss_pred cCcccCHHHHHHHHHHHc-Ccc--HHHHHHHHHHHHHHcCCCchHHHHhCChhhcCHHHHHHHHHHHHHhcCCCEEEEcC
Confidence 334579999987642111 111 1223456788999999972 13688999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 187 PLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 187 Pts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||+|||+.+++.+.+.|+++.+ +.|||++||+++++..+||++++|++|+++..+
T Consensus 152 Pt~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~~ 208 (230)
T TIGR02770 152 PTTDLDVVNQARVLKLLRELRQLFGTGILLITHDLGVVARIADEVAVMDDGRIVERG 208 (230)
T ss_pred CccccCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 9999999999999999999864 589999999999999999999999999998754
|
This family represents the NikD subunit of a multisubunit nickel import ABC transporter complex. Nickel, once imported, may be used in urease and in certain classes of hydrogenase and superoxide dismutase. NikD and NikE are homologous. |
| >PRK03695 vitamin B12-transporter ATPase; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-49 Score=341.96 Aligned_cols=206 Identities=28% Similarity=0.382 Sum_probs=173.3
Q ss_pred EEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCc
Q 035832 19 EVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEK 98 (245)
Q Consensus 19 ~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ 98 (245)
+++||++. .+|+|+||+|++||+++|+||||||||||+++|+|++++ +|+|.++|+++..... ..+++.
T Consensus 2 ~~~~l~~~------~~l~~vsl~i~~Gei~~l~G~nGsGKSTLl~~l~Gl~~~-~G~i~~~g~~i~~~~~----~~~~~~ 70 (248)
T PRK03695 2 QLNDVAVS------TRLGPLSAEVRAGEILHLVGPNGAGKSTLLARMAGLLPG-SGSIQFAGQPLEAWSA----AELARH 70 (248)
T ss_pred cccccchh------ceecceEEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCC-CeEEEECCEecCcCCH----HHHhhh
Confidence 57788874 269999999999999999999999999999999999964 9999999988753221 112356
Q ss_pred EEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh-
Q 035832 99 VGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ- 177 (245)
Q Consensus 99 i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~- 177 (245)
++|+||++. .++..|+.+|+.++.... . ........+.++++.+++.+. .++++.+||||||||++|||||+.
T Consensus 71 i~~v~q~~~-~~~~~tv~~nl~~~~~~~--~--~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrv~la~al~~~ 144 (248)
T PRK03695 71 RAYLSQQQT-PPFAMPVFQYLTLHQPDK--T--RTEAVASALNEVAEALGLDDK-LGRSVNQLSGGEWQRVRLAAVVLQV 144 (248)
T ss_pred eEEecccCc-cCCCccHHHHHHhcCccC--C--CcHHHHHHHHHHHHHcCCHhH-hcCCcccCCHHHHHHHHHHHHHhcc
Confidence 999999974 456789999998763211 1 112234567889999999865 699999999999999999999998
Q ss_pred ------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 178 ------VPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 178 ------~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+|++|||||||+|||+.+++.+.++|+++++ +.|||++||+++++..+||++++|++|+++..+
T Consensus 145 ~~~~~p~p~llllDEPt~~LD~~~~~~l~~~L~~~~~~~~tvi~~sH~~~~~~~~~d~i~~l~~G~i~~~g 215 (248)
T PRK03695 145 WPDINPAGQLLLLDEPMNSLDVAQQAALDRLLSELCQQGIAVVMSSHDLNHTLRHADRVWLLKQGKLLASG 215 (248)
T ss_pred ccccCCCCCEEEEcCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEC
Confidence 6799999999999999999999999999864 689999999999999999999999999998654
|
|
| >PRK11176 lipid transporter ATP-binding/permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.8e-50 Score=380.55 Aligned_cols=217 Identities=27% Similarity=0.401 Sum_probs=175.0
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.|+++|++|+|+++.+++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.++|.++..... ..++
T Consensus 341 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~~aIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~----~~~~ 416 (582)
T PRK11176 341 DIEFRNVTFTYPGKEVPALRNINFKIPAGKTVALVGRSGSGKSTIANLLTRFYDIDEGEILLDGHDLRDYTL----ASLR 416 (582)
T ss_pred eEEEEEEEEecCCCCCccccCceEEeCCCCEEEEECCCCCCHHHHHHHHHhccCCCCceEEECCEEhhhcCH----HHHH
Confidence 599999999997644679999999999999999999999999999999999999999999999998865332 1246
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHH-HHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYL-ALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
+.|+|+||++. +++.|++||+.++.+.........+.. ...+.+.++.+ |++.. ......+||||||||++|||
T Consensus 417 ~~i~~v~Q~~~--lf~~Ti~~Ni~~~~~~~~~~~~i~~al~~~~l~~~i~~lp~Gldt~-ig~~g~~LSGGqrQRi~LAR 493 (582)
T PRK11176 417 NQVALVSQNVH--LFNDTIANNIAYARTEQYSREQIEEAARMAYAMDFINKMDNGLDTV-IGENGVLLSGGQRQRIAIAR 493 (582)
T ss_pred hhceEEccCce--eecchHHHHHhcCCCCCCCHHHHHHHHHHhCcHHHHHhcccccCce-eCCCCCcCCHHHHHHHHHHH
Confidence 78999999983 457899999998732211110000000 11123334433 34432 35556789999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||+.+|++||||||||+||+++...+++.|.++.+++|+|+|||+++.+ +.||+|++|++|+++..+
T Consensus 494 all~~~~ililDEptsaLD~~t~~~i~~~l~~~~~~~tvI~VtHr~~~~-~~~D~Ii~l~~g~i~e~g 560 (582)
T PRK11176 494 ALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTI-EKADEILVVEDGEIVERG 560 (582)
T ss_pred HHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHH-HhCCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999987789999999999876 569999999999998754
|
|
| >cd03233 ABC_PDR_domain1 The pleiotropic drug resistance (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-49 Score=330.12 Aligned_cols=191 Identities=23% Similarity=0.304 Sum_probs=162.8
Q ss_pred eEEEEeEEEECCCC--ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCcceEEEcCccCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGT--QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK---PTSGSINIRGYNNDGEPNNSP 91 (245)
Q Consensus 17 ~l~~~~l~~~y~~~--~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~~ 91 (245)
.+.++|++|.|+.+ .+.+|+++||+|++||+++|+||||||||||+++|+|+++ |++|+|.++|.++....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~il~~~s~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~~~~G~i~i~g~~~~~~~---- 78 (202)
T cd03233 3 TLSWRNISFTTGKGRSKIPILKDFSGVVKPGEMVLVLGRPGSGCSTLLKALANRTEGNVSVEGDIHYNGIPYKEFA---- 78 (202)
T ss_pred eEEEEccEEEeccCCCCceeeeeEEEEECCCcEEEEECCCCCCHHHHHHHhcccCCCCCCcceEEEECCEECccch----
Confidence 57899999999742 4679999999999999999999999999999999999999 89999999998875321
Q ss_pred CCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHH
Q 035832 92 EPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLAL 171 (245)
Q Consensus 92 ~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~i 171 (245)
...++.++|+||++. +++.+|+.+|+.++.. .. .++++.+||+|||||++|
T Consensus 79 -~~~~~~i~~~~q~~~-~~~~~tv~~~l~~~~~---------------~~------------~~~~~~~LS~Ge~qrl~l 129 (202)
T cd03233 79 -EKYPGEIIYVSEEDV-HFPTLTVRETLDFALR---------------CK------------GNEFVRGISGGERKRVSI 129 (202)
T ss_pred -hhhcceEEEEecccc-cCCCCcHHHHHhhhhh---------------hc------------cccchhhCCHHHHHHHHH
Confidence 123567999999974 6667899999976410 00 366788999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEE-EecChhHHHhhccEEEEEeCCeEEEe
Q 035832 172 AIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILV-VSHDLKEMAALVDHSWRMDMGGFLVE 240 (245)
Q Consensus 172 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii-~tHd~~~~~~~~d~v~~l~~G~i~~~ 240 (245)
||||+.+|+++||||||+|||+.+++.++++|+++.+ +.|+|+ ++|+.+++..+||++++|++|+++..
T Consensus 130 aral~~~p~llllDEPt~~LD~~~~~~~~~~l~~~~~~~~~t~ii~~~h~~~~~~~~~d~i~~l~~G~i~~~ 201 (202)
T cd03233 130 AEALVSRASVLCWDNSTRGLDSSTALEILKCIRTMADVLKTTTFVSLYQASDEIYDLFDKVLVLYEGRQIYY 201 (202)
T ss_pred HHHHhhCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEEcCCHHHHHHhCCeEEEEECCEEEec
Confidence 9999999999999999999999999999999999864 456555 45667888899999999999998753
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.7e-50 Score=327.05 Aligned_cols=177 Identities=30% Similarity=0.486 Sum_probs=155.1
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|++++|++...++++|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++... . ..+++
T Consensus 1 i~~~~~~~~~~~~~~~~l~~i~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~-~----~~~~~ 75 (178)
T cd03247 1 LSINNVSFSYPEQEQQVLKNLSLELKQGEKIALLGRSGSGKSTLLQLLTGDLKPQQGEITLDGVPVSDL-E----KALSS 75 (178)
T ss_pred CEEEEEEEEeCCCCccceEEEEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCEEEECCEEHHHH-H----HHHHh
Confidence 478999999975323699999999999999999999999999999999999999999999999876321 0 11246
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ 177 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~ 177 (245)
.++|+||++. ++ ..|++||+ +.+||||||||++||||++.
T Consensus 76 ~i~~~~q~~~-~~-~~tv~~~i--------------------------------------~~~LS~G~~qrv~laral~~ 115 (178)
T cd03247 76 LISVLNQRPY-LF-DTTLRNNL--------------------------------------GRRFSGGERQRLALARILLQ 115 (178)
T ss_pred hEEEEccCCe-ee-cccHHHhh--------------------------------------cccCCHHHHHHHHHHHHHhc
Confidence 7999999974 33 46777665 66899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEe
Q 035832 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~ 240 (245)
+|++|||||||++||+.+++.+++.|+++.++.|||++||+++++. .||++++|++|+++..
T Consensus 116 ~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~-~~d~~~~l~~g~i~~~ 177 (178)
T cd03247 116 DAPIVLLDEPTVGLDPITERQLLSLIFEVLKDKTLIWITHHLTGIE-HMDKILFLENGKIIMQ 177 (178)
T ss_pred CCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEEec
Confidence 9999999999999999999999999999866789999999999986 6999999999998754
|
The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism. |
| >cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-49 Score=324.48 Aligned_cols=172 Identities=35% Similarity=0.510 Sum_probs=151.4
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|++++|++...++++++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... ..+++
T Consensus 1 i~~~~l~~~~~~~~~~~l~~~~~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~g~~~~~~~~----~~~~~ 76 (173)
T cd03246 1 LEVENVSFRYPGAEPPVLRNVSFSIEPGESLAIIGPSGSGKSTLARLILGLLRPTSGRVRLDGADISQWDP----NELGD 76 (173)
T ss_pred CEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEEcccCCH----HHHHh
Confidence 47899999997533469999999999999999999999999999999999999999999999988753221 12346
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ 177 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~ 177 (245)
+++|+||++. +++ .|+.||+ ||||||||++|||||+.
T Consensus 77 ~i~~~~q~~~-~~~-~tv~~~l-----------------------------------------LS~G~~qrv~la~al~~ 113 (173)
T cd03246 77 HVGYLPQDDE-LFS-GSIAENI-----------------------------------------LSGGQRQRLGLARALYG 113 (173)
T ss_pred heEEECCCCc-ccc-CcHHHHC-----------------------------------------cCHHHHHHHHHHHHHhc
Confidence 7999999984 443 4777765 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeE
Q 035832 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGF 237 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i 237 (245)
+|+++||||||++||+.++..++++|+++++ +.|||++|||++++ .+||++++|++|++
T Consensus 114 ~p~~lllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~-~~~d~v~~l~~G~i 173 (173)
T cd03246 114 NPRILVLDEPNSHLDVEGERALNQAIAALKAAGATRIVIAHRPETL-ASADRILVLEDGRV 173 (173)
T ss_pred CCCEEEEECCccccCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH-HhCCEEEEEECCCC
Confidence 9999999999999999999999999999864 68999999999988 58999999999874
|
They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra |
| >cd03229 ABC_Class3 This class is comprised of all BPD (Binding Protein Dependent) systems that are largely represented in archaea and eubacteria and are primarily involved in scavenging solutes from the environment | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-49 Score=325.31 Aligned_cols=176 Identities=40% Similarity=0.580 Sum_probs=154.8
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|++++|++ +++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ....+++
T Consensus 1 i~~~~l~~~~~~--~~~l~~i~~~i~~G~~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~~--~~~~~~~ 76 (178)
T cd03229 1 LELKNVSKRYGQ--KTVLNDVSLNIEAGEIVALLGPSGSGKSTLLRCIAGLEEPDSGSILIDGEDLTDLED--ELPPLRR 76 (178)
T ss_pred CEEEEEEEEECC--eEEEeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEccccch--hHHHHhh
Confidence 478999999964 469999999999999999999999999999999999999999999999988753210 0112356
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ 177 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~ 177 (245)
.++|+||++. +++..|+.||+.+. ||||||||++|||||+.
T Consensus 77 ~i~~~~q~~~-~~~~~t~~~~l~~~--------------------------------------lS~G~~qr~~la~al~~ 117 (178)
T cd03229 77 RIGMVFQDFA-LFPHLTVLENIALG--------------------------------------LSGGQQQRVALARALAM 117 (178)
T ss_pred cEEEEecCCc-cCCCCCHHHheeec--------------------------------------CCHHHHHHHHHHHHHHC
Confidence 8999999985 55667888876541 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCe
Q 035832 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGG 236 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~ 236 (245)
+|+++||||||+|||+.++..++++|+++++ +.|+|++|||++++..+||++++|++|+
T Consensus 118 ~p~llilDEP~~~LD~~~~~~l~~~l~~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~g~ 178 (178)
T cd03229 118 DPDVLLLDEPTSALDPITRREVRALLKSLQAQLGITVVLVTHDLDEAARLADRVVVLRDGK 178 (178)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhcCEEEEEeCCC
Confidence 9999999999999999999999999999864 4899999999999998999999999884
|
ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR03797 NHPM_micro_ABC2 NHPM bacteriocin system ABC transporter, ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-49 Score=385.16 Aligned_cols=205 Identities=30% Similarity=0.460 Sum_probs=172.3
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.|+++||+|+|++..+++|+|+||+|++||.+||+||||||||||+|+|+|+++|++|+|.+||.++...+. ..+|
T Consensus 451 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~----~~lr 526 (686)
T TIGR03797 451 AIEVDRVTFRYRPDGPLILDDVSLQIEPGEFVAIVGPSGSGKSTLLRLLLGFETPESGSVFYDGQDLAGLDV----QAVR 526 (686)
T ss_pred eEEEEEEEEEcCCCCccceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCEEEECCEEcCcCCH----HHHH
Confidence 599999999996544679999999999999999999999999999999999999999999999999865432 2346
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCC-----------CCccCCCCCCCCChHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGL-----------DGTSLDKDPHSLSGGY 165 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~~LSgGq 165 (245)
++||||||++. +++.|++||+.++.+ . . ++++.++++..++ +.. .......|||||
T Consensus 527 ~~i~~v~Q~~~--lf~gTI~eNi~~~~~-~-~--------~e~i~~al~~a~l~~~i~~lp~G~dt~-ige~G~~LSGGQ 593 (686)
T TIGR03797 527 RQLGVVLQNGR--LMSGSIFENIAGGAP-L-T--------LDEAWEAARMAGLAEDIRAMPMGMHTV-ISEGGGTLSGGQ 593 (686)
T ss_pred hccEEEccCCc--cCcccHHHHHhcCCC-C-C--------HHHHHHHHHHcCcHHHHHhcccccccc-ccCCCCCCCHHH
Confidence 78999999984 457899999998733 1 1 1123333444443 322 345567899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 166 KRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 166 kqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|||++|||||+.+|++||||||||+||+.+.+++.+.|+++ ++|+|+|||+++.+. .||+|++|++|+++..+
T Consensus 594 rQRialARAll~~p~iLiLDEpTS~LD~~te~~i~~~L~~~--~~T~IiItHr~~~i~-~~D~Iivl~~G~iv~~G 666 (686)
T TIGR03797 594 RQRLLIARALVRKPRILLFDEATSALDNRTQAIVSESLERL--KVTRIVIAHRLSTIR-NADRIYVLDAGRVVQQG 666 (686)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHh--CCeEEEEecChHHHH-cCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999887 479999999998875 59999999999998765
|
Members of this protein family are ABC transporter ATP-binding subunits, part of a three-gene putative bacteriocin transport operon. The other subunits include another ATP-binding subunit (TIGR03796), which has an N-terminal propeptide cleavage domain, and an HlyD homolog (TIGR03794). In a number of genomes, a conserved propeptide sequence with a classic Gly-Gly motif |
| >cd03220 ABC_KpsT_Wzt ABC_KpsT_Wzt The KpsT/Wzt ABC transporter subfamily is involved in extracellular polysaccharide export | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-49 Score=334.15 Aligned_cols=200 Identities=27% Similarity=0.333 Sum_probs=168.3
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
+.++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++... ..
T Consensus 23 l~~~~~~~~~~~--~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~p~~G~i~~~g~~~~~~---------~~ 91 (224)
T cd03220 23 LGILGRKGEVGE--FWALKDVSFEVPRGERIGLIGRNGAGKSTLLRLLAGIYPPDSGTVTVRGRVSSLL---------GL 91 (224)
T ss_pred hhhhhhhhhcCC--eEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEEchhh---------cc
Confidence 789999999964 5799999999999999999999999999999999999999999999998764210 00
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ 177 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~ 177 (245)
.. .+++..|+.||+.++....... .....+.+.++++.+++.+. .++++.+||||||||++|||||+.
T Consensus 92 -------~~-~~~~~~tv~enl~~~~~~~~~~---~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgG~~qrv~laral~~ 159 (224)
T cd03220 92 -------GG-GFNPELTGRENIYLNGRLLGLS---RKEIDEKIDEIIEFSELGDF-IDLPVKTYSSGMKARLAFAIATAL 159 (224)
T ss_pred -------cc-cCCCCCcHHHHHHHHHHHcCCC---HHHHHHHHHHHHHHcCChhh-hhCChhhCCHHHHHHHHHHHHHhc
Confidence 11 1234579999998752111101 12233457788999999875 699999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEe
Q 035832 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~ 240 (245)
+|+++||||||+|||+.+++.+++.|.++.+ +.|||++||+++++..+||++++|++|+++..
T Consensus 160 ~p~llllDEP~~gLD~~~~~~~~~~l~~~~~~~~tiii~sH~~~~~~~~~d~i~~l~~G~i~~~ 223 (224)
T cd03220 160 EPDILLIDEVLAVGDAAFQEKCQRRLRELLKQGKTVILVSHDPSSIKRLCDRALVLEKGKIRFD 223 (224)
T ss_pred CCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEec
Confidence 9999999999999999999999999999864 58999999999999999999999999998764
|
Among the variety of membrane-linked or extracellular polysaccharides excreted by bacteria, only capsular polysaccharides, lipopolysaccharides, and teichoic acids have been shown to be exported by ABC transporters. A typical system is made of a conserved integral membrane and an ABC. In addition to these proteins, capsular polysaccharide exporter systems require two 'accessory' proteins to perform their function: a periplasmic (E.coli) or a lipid-anchored outer membrane protein called OMA (Neisseria meningitidis and Haemophilus influenzae) and a cytoplasmic membrane protein MPA2. |
| >TIGR03796 NHPM_micro_ABC1 NHPM bacteriocin system ABC transporter, peptidase/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.4e-50 Score=387.48 Aligned_cols=214 Identities=26% Similarity=0.369 Sum_probs=173.5
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.|+++|++|+|++..+++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||.++...+. ..++
T Consensus 477 ~I~~~~vsf~y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~----~~lr 552 (710)
T TIGR03796 477 YVELRNITFGYSPLEPPLIENFSLTLQPGQRVALVGGSGSGKSTIAKLVAGLYQPWSGEILFDGIPREEIPR----EVLA 552 (710)
T ss_pred eEEEEEEEEecCCCCCCcccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEeHHHCCH----HHHH
Confidence 599999999998644679999999999999999999999999999999999999999999999998864332 2346
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHH-HHHHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKE-YLALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
++||||||++. +++.|++||+.++.+... .....+ .....+.+.++.+ |++.. .......||||||||++|||
T Consensus 553 ~~i~~v~Q~~~--lf~gTi~eNi~l~~~~~~-~~~i~~al~~~~l~~~i~~lp~gl~t~-i~e~G~~LSGGQrQRiaLAR 628 (710)
T TIGR03796 553 NSVAMVDQDIF--LFEGTVRDNLTLWDPTIP-DADLVRACKDAAIHDVITSRPGGYDAE-LAEGGANLSGGQRQRLEIAR 628 (710)
T ss_pred hheeEEecCCh--hhhccHHHHhhCCCCCCC-HHHHHHHHHHhCCHHHHHhCcCcccce-eccCCCCCCHHHHHHHHHHH
Confidence 88999999983 457899999998632211 000000 0011123334433 44443 45667889999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||+.+|++||||||||+||+.+.+++++.|++ .++|+|+|||+++.+. .||+|++|++|+++..+
T Consensus 629 all~~p~iliLDEptS~LD~~te~~i~~~l~~--~~~T~IiitHrl~~i~-~~D~Iivl~~G~i~~~G 693 (710)
T TIGR03796 629 ALVRNPSILILDEATSALDPETEKIIDDNLRR--RGCTCIIVAHRLSTIR-DCDEIIVLERGKVVQRG 693 (710)
T ss_pred HHhhCCCEEEEECccccCCHHHHHHHHHHHHh--cCCEEEEEecCHHHHH-hCCEEEEEeCCEEEEec
Confidence 99999999999999999999999999999986 4689999999999875 59999999999998765
|
This protein describes an multidomain ABC transporter subunit that is one of three protein families associated with some regularity with a distinctive family of putative bacteriocins. It includes a bacteriocin-processing peptidase domain at the N-terminus. Model TIGR03793 describes a conserved propeptide region for this bacteriocin family, unusual because it shows obvious homology a region of the enzyme nitrile hydratase up to the classic Gly-Gly cleavage motif. This family is therefore predicted to be a subunit of a bacteriocin processing and export system characteristic to this system that we designate NHPM, Nitrile Hydratase Propeptide Microcin. |
| >COG4988 CydD ABC-type transport system involved in cytochrome bd biosynthesis, ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-49 Score=365.28 Aligned_cols=208 Identities=29% Similarity=0.468 Sum_probs=175.6
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.++.+|+++.|++++ ++++|+||++++|+.++|+|+||||||||+++|+|+.+|++|+|.+||.+...... ..++
T Consensus 320 ei~~~~l~~~y~~g~-~~l~~l~~t~~~g~~talvG~SGaGKSTLl~lL~G~~~~~~G~I~vng~~l~~l~~----~~~~ 394 (559)
T COG4988 320 EISLENLSFRYPDGK-PALSDLNLTIKAGQLTALVGASGAGKSTLLNLLLGFLAPTQGEIRVNGIDLRDLSP----EAWR 394 (559)
T ss_pred eeeecceEEecCCCC-cccCCceeEecCCcEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCccccccCH----HHHH
Confidence 355669999998754 79999999999999999999999999999999999999999999999998765432 2357
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCc---------cCCCCCCCCChHHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGT---------SLDKDPHSLSGGYKR 167 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---------~~~~~~~~LSgGqkq 167 (245)
++++||+|+| +++..|++||+.++.+... ++.+.++++..++.+. ........|||||+|
T Consensus 395 k~i~~v~Q~p--~lf~gTireNi~l~~~~~s---------~e~i~~al~~a~l~~~v~~p~GLdt~ige~G~~LSgGQ~Q 463 (559)
T COG4988 395 KQISWVSQNP--YLFAGTIRENILLARPDAS---------DEEIIAALDQAGLLEFVPKPDGLDTVIGEGGAGLSGGQAQ 463 (559)
T ss_pred hHeeeeCCCC--ccccccHHHHhhccCCcCC---------HHHHHHHHHHhcHHHhhcCCCcccchhccCCCCCCHHHHH
Confidence 8999999999 5668899999999743211 1234444555444322 134455669999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 168 RLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 168 rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||++||||+.+++++|+||||++||.++.+.+.+.|.++.+++|+|++||++..+. -+|+|++|++|+++..+
T Consensus 464 RlaLARAll~~~~l~llDEpTA~LD~etE~~i~~~l~~l~~~ktvl~itHrl~~~~-~~D~I~vld~G~l~~~g 536 (559)
T COG4988 464 RLALARALLSPASLLLLDEPTAHLDAETEQIILQALQELAKQKTVLVITHRLEDAA-DADRIVVLDNGRLVEQG 536 (559)
T ss_pred HHHHHHHhcCCCCEEEecCCccCCCHhHHHHHHHHHHHHHhCCeEEEEEcChHHHh-cCCEEEEecCCceeccC
Confidence 99999999999999999999999999999999999999999999999999999875 58999999999998754
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-49 Score=358.22 Aligned_cols=220 Identities=27% Similarity=0.391 Sum_probs=193.0
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
.+.+++++++|.|++ ..++++|||+|.+|||.||+|+||||||||+++|.|+++|++|+|+++|+.+.-.+ +...
T Consensus 2 ~~~l~~~~itK~f~~--~~And~V~l~v~~GeIHaLLGENGAGKSTLm~iL~G~~~P~~GeI~v~G~~v~~~s---P~dA 76 (501)
T COG3845 2 EPALEMRGITKRFPG--VVANDDVSLSVKKGEIHALLGENGAGKSTLMKILFGLYQPDSGEIRVDGKEVRIKS---PRDA 76 (501)
T ss_pred CceEEEeccEEEcCC--EEecCceeeeecCCcEEEEeccCCCCHHHHHHHHhCcccCCcceEEECCEEeccCC---HHHH
Confidence 356999999999984 67999999999999999999999999999999999999999999999999875432 2334
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
.+..||+|+|++. +++.+||.||+.++...........+..++++.++.+.+|++= ..++++.+||-||||||.|.+|
T Consensus 77 ~~~GIGMVhQHF~-Lv~~lTV~ENiiLg~e~~~~~~~~~~~~~~~i~~l~~~yGl~v-dp~~~V~dLsVG~qQRVEIlKa 154 (501)
T COG3845 77 IRLGIGMVHQHFM-LVPTLTVAENIILGLEPSKGGLIDRRQARARIKELSERYGLPV-DPDAKVADLSVGEQQRVEILKA 154 (501)
T ss_pred HHcCCcEEeeccc-cccccchhhhhhhcCccccccccCHHHHHHHHHHHHHHhCCCC-CccceeecCCcchhHHHHHHHH
Confidence 4678999999985 7889999999999854321111223455678899999999985 4799999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|+.+|++|||||||+-|-|...+++++.++++++ ++|||+|||-++++.++|||+-+|..|+++..-
T Consensus 155 Lyr~a~iLILDEPTaVLTP~E~~~lf~~l~~l~~~G~tIi~ITHKL~Ev~~iaDrvTVLR~Gkvvgt~ 222 (501)
T COG3845 155 LYRGARLLILDEPTAVLTPQEADELFEILRRLAAEGKTIIFITHKLKEVMAIADRVTVLRRGKVVGTV 222 (501)
T ss_pred HhcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeccHHHHHHhhCeeEEEeCCeEEeee
Confidence 9999999999999999999999999999999975 799999999999999999999999999987543
|
|
| >COG4559 ABC-type hemin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-50 Score=326.32 Aligned_cols=218 Identities=27% Similarity=0.345 Sum_probs=185.4
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
||+++|++++..+ +.+++++||++.+||+.+|+||||||||||||.|+|.+.|++|++.++|.++...+. ....
T Consensus 1 mi~a~nls~~~~G--r~ll~~vsl~~~pGev~ailGPNGAGKSTlLk~LsGel~p~~G~v~~~g~~l~~~~~----~~lA 74 (259)
T COG4559 1 MIRAENLSYSLAG--RRLLDGVSLDLRPGEVLAILGPNGAGKSTLLKALSGELSPDSGEVTLNGVPLNSWPP----EELA 74 (259)
T ss_pred CeeeeeeEEEeec--ceeccCcceeccCCcEEEEECCCCccHHHHHHHhhCccCCCCCeEeeCCcChhhCCH----HHHH
Confidence 6899999999965 468999999999999999999999999999999999999999999999998765432 2235
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
++-+.+||+.. +-+++||.|.+.+|........ ...+..+.+.+++...++..+ ..+...+|||||||||.+||.|+
T Consensus 75 ~~raVlpQ~s~-laFpFtv~eVV~mGr~p~~~g~-~~~e~~~i~~~ala~~d~~~l-a~R~y~~LSGGEqQRVqlARvLa 151 (259)
T COG4559 75 RHRAVLPQNSS-LAFPFTVQEVVQMGRIPHRSGR-EPEEDERIAAQALAATDLSGL-AGRDYRTLSGGEQQRVQLARVLA 151 (259)
T ss_pred HHhhhcccCcc-cccceEHHHHHHhcccccccCC-CchhhHHHHHHHHHHcChhhh-hccchhhcCchHHHHHHHHHHHH
Confidence 67799999985 5567899999999843221111 112334457788999999986 78999999999999999999996
Q ss_pred h------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEeccC
Q 035832 177 Q------VPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQRI 243 (245)
Q Consensus 177 ~------~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~~ 243 (245)
+ ++++|+||||||+||+.++..++++.+++.+ +..|+.|-||++.+..||||+++|++|++++.+.+
T Consensus 152 Ql~~~v~~~r~L~LDEPtsaLDi~HQ~~tl~laR~la~~g~~V~~VLHDLNLAA~YaDrivll~~Grv~a~g~p 225 (259)
T COG4559 152 QLWPPVPSGRWLFLDEPTSALDIAHQHHTLRLARQLAREGGAVLAVLHDLNLAAQYADRIVLLHQGRVIASGSP 225 (259)
T ss_pred HccCCCCCCceEEecCCccccchHHHHHHHHHHHHHHhcCCcEEEEEccchHHHHhhheeeeeeCCeEeecCCH
Confidence 5 4458899999999999999999999999974 68999999999999999999999999999987643
|
|
| >COG4604 CeuD ABC-type enterochelin transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4e-51 Score=330.31 Aligned_cols=217 Identities=30% Similarity=0.400 Sum_probs=191.5
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
|++++||+|+|++ +.+++++|++|++|.+++|+|||||||||||.++++|+++++|+|+++|.++...+ ...+.
T Consensus 1 MI~i~nv~K~y~~--~~vl~~isl~i~~g~iTs~IGPNGAGKSTLLS~~sRL~~~d~G~i~i~g~~~~~~~----s~~LA 74 (252)
T COG4604 1 MITIENVSKSYGT--KVVLDDVSLDIPKGGITSIIGPNGAGKSTLLSMMSRLLKKDSGEITIDGLELTSTP----SKELA 74 (252)
T ss_pred CeeehhhhHhhCC--EEeeccceeeecCCceeEEECCCCccHHHHHHHHHHhccccCceEEEeeeecccCC----hHHHH
Confidence 6899999999975 57999999999999999999999999999999999999999999999999987543 23456
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
++++++-|... .-..+||+|-+.||....... ...++....+.++++.++|++. .+++..+||||||||+.||+.++
T Consensus 75 k~lSILkQ~N~-i~~rlTV~dLv~FGRfPYSqG-Rlt~eD~~~I~~aieyl~L~~l-~dryLd~LSGGQrQRAfIAMVla 151 (252)
T COG4604 75 KKLSILKQENH-INSRLTVRDLVGFGRFPYSQG-RLTKEDRRIINEAIEYLHLEDL-SDRYLDELSGGQRQRAFIAMVLA 151 (252)
T ss_pred HHHHHHHhhch-hhheeEHHHHhhcCCCcccCC-CCchHHHHHHHHHHHHhcccch-HHHhHHhcccchhhhhhhheeee
Confidence 78999999863 445789999999984322222 1234556678999999999986 69999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
++.+.++||||.++||..+..++++.|+++.+ ++||++|-||++++..|+|+++.|++|+++.++.
T Consensus 152 QdTdyvlLDEPLNNLDmkHsv~iMk~Lrrla~el~KtiviVlHDINfAS~YsD~IVAlK~G~vv~~G~ 219 (252)
T COG4604 152 QDTDYVLLDEPLNNLDMKHSVQIMKILRRLADELGKTIVVVLHDINFASCYSDHIVALKNGKVVKQGS 219 (252)
T ss_pred ccCcEEEecCcccccchHHHHHHHHHHHHHHHHhCCeEEEEEecccHHHhhhhheeeecCCEEEecCC
Confidence 99999999999999999999999999999975 5899999999999999999999999999998764
|
|
| >cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.9e-50 Score=326.95 Aligned_cols=177 Identities=34% Similarity=0.492 Sum_probs=154.5
Q ss_pred EEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCc
Q 035832 19 EVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEK 98 (245)
Q Consensus 19 ~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ 98 (245)
+++|++++|++ .++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++..... ..+++.
T Consensus 1 ~~~~l~~~~~~--~~~l~~~~~~i~~G~~~~l~G~nGsGKStLl~~i~G~~~~~~G~v~~~g~~~~~~~~----~~~~~~ 74 (180)
T cd03214 1 EVENLSVGYGG--RTVLDDLSLSIEAGEIVGILGPNGAGKSTLLKTLAGLLKPSSGEILLDGKDLASLSP----KELARK 74 (180)
T ss_pred CeeEEEEEECC--eeeEeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCcCCH----HHHHHH
Confidence 47899999964 469999999999999999999999999999999999999999999999987643211 011234
Q ss_pred EEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhC
Q 035832 99 VGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQV 178 (245)
Q Consensus 99 i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~ 178 (245)
++|+|| +++.+++.+. .++.+.+||||||||++|||||+.+
T Consensus 75 i~~~~q--------------------------------------~l~~~gl~~~-~~~~~~~LS~G~~qrl~laral~~~ 115 (180)
T cd03214 75 IAYVPQ--------------------------------------ALELLGLAHL-ADRPFNELSGGERQRVLLARALAQE 115 (180)
T ss_pred HhHHHH--------------------------------------HHHHcCCHhH-hcCCcccCCHHHHHHHHHHHHHhcC
Confidence 666665 5666788764 5888999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEe
Q 035832 179 PDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240 (245)
Q Consensus 179 p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~ 240 (245)
|+++||||||++||+.+++.+.++|.++++ +.|+|++||+++++.++||++++|++|+++..
T Consensus 116 p~llllDEP~~~LD~~~~~~~~~~l~~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~~ 179 (180)
T cd03214 116 PPILLLDEPTSHLDIAHQIELLELLRRLARERGKTVVMVLHDLNLAARYADRVILLKDGRIVAQ 179 (180)
T ss_pred CCEEEEeCCccCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEec
Confidence 999999999999999999999999999864 68999999999999999999999999998753
|
Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters. |
| >COG4161 ArtP ABC-type arginine transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-50 Score=315.15 Aligned_cols=220 Identities=26% Similarity=0.386 Sum_probs=188.1
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCC--CCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGE--PNNSPEPL 94 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~--~~~~~~~~ 94 (245)
.|+++|+++.|+. ..+|-||+|+.++||.+.++||||||||||+|.++-+.-|.+|+..+.|....-. +.......
T Consensus 2 sirv~~in~~yg~--~q~lfdi~l~~~~getlvllgpsgagkssllr~lnlle~p~sg~l~ia~~~fd~s~~~~~k~i~~ 79 (242)
T COG4161 2 SIQLNGINCFYGA--HQALFDITLDCPEGETLVLLGPSGAGKSSLLRVLNLLEMPRSGTLNIAGNHFDFSKTPSDKAIRD 79 (242)
T ss_pred ceEEccccccccc--chheeeeeecCCCCCEEEEECCCCCchHHHHHHHHHHhCCCCCeEEecccccccccCccHHHHHH
Confidence 4899999999975 4689999999999999999999999999999999999999999999988754321 11111123
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
.|+++|+|||+. .+|+.+||.||+.-+..+-.+. .+.+...++.++++++.|.++ +|+.|-.|||||+|||+||||
T Consensus 80 lr~~vgmvfqqy-~lwphltv~enlieap~kv~gl--~~~qa~~~a~ellkrlrl~~~-adr~plhlsggqqqrvaiara 155 (242)
T COG4161 80 LRRNVGMVFQQY-NLWPHLTVQENLIEAPCRVLGL--SKDQALARAEKLLKRLRLKPY-ADRYPLHLSGGQQQRVAIARA 155 (242)
T ss_pred HHHhhhhhhhhh-ccCchhHHHHHHHhhhHHHhCC--CHHHHHHHHHHHHHHhccccc-cccCceecccchhhhHHHHHH
Confidence 467899999997 4899999999998752211111 233445568899999999986 799999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
|+++|++|++||||++|||+-..++.++|+++.. +.|-+++||..+.+...+.+|++|++|+|+..+.
T Consensus 156 lmmkpqvllfdeptaaldpeitaqvv~iikel~~tgitqvivthev~va~k~as~vvyme~g~ive~g~ 224 (242)
T COG4161 156 LMMEPQVLLFDEPTAALDPEITAQIVSIIKELAETGITQVIVTHEVEVARKTASRVVYMENGHIVEQGD 224 (242)
T ss_pred HhcCCcEEeecCcccccCHHHHHHHHHHHHHHHhcCceEEEEEeehhHHHhhhhheEeeecCeeEeecc
Confidence 9999999999999999999999999999999986 6999999999999999999999999999987653
|
|
| >TIGR03375 type_I_sec_LssB type I secretion system ATPase, LssB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-49 Score=383.49 Aligned_cols=217 Identities=30% Similarity=0.437 Sum_probs=176.4
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.|+++|++|+|++..+++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||.++...+. ..++
T Consensus 463 ~I~~~~vsf~Y~~~~~~vL~~i~l~i~~G~~iaIvG~sGsGKSTLlklL~gl~~p~~G~I~idg~~l~~~~~----~~lr 538 (694)
T TIGR03375 463 EIEFRNVSFAYPGQETPALDNVSLTIRPGEKVAIIGRIGSGKSTLLKLLLGLYQPTEGSVLLDGVDIRQIDP----ADLR 538 (694)
T ss_pred eEEEEEEEEEeCCCCccceeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCH----HHHH
Confidence 599999999997544579999999999999999999999999999999999999999999999998865432 2346
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
+.++||||++. ++..|++||+.++.+...............+.+.++.+ |++.. .......||||||||++||||
T Consensus 539 ~~i~~v~Q~~~--lf~~TI~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~T~-i~e~G~~LSgGQrQRlalARa 615 (694)
T TIGR03375 539 RNIGYVPQDPR--LFYGTLRDNIALGAPYADDEEILRAAELAGVTEFVRRHPDGLDMQ-IGERGRSLSGGQRQAVALARA 615 (694)
T ss_pred hccEEECCChh--hhhhhHHHHHhCCCCCCCHHHHHHHHHHcChHHHHHhCcccccce-ecCCCCCCCHHHHHHHHHHHH
Confidence 78999999983 45789999999873321100000000011123334433 44433 456677899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|+.+|+++|||||||+||+++.+.+.+.|.++.+++|+|+|||+++.+ +.||+|++|++|+++..+
T Consensus 616 ll~~p~iliLDE~Ts~LD~~te~~i~~~l~~~~~~~T~iiItHrl~~~-~~~D~iivl~~G~i~e~G 681 (694)
T TIGR03375 616 LLRDPPILLLDEPTSAMDNRSEERFKDRLKRWLAGKTLVLVTHRTSLL-DLVDRIIVMDNGRIVADG 681 (694)
T ss_pred HhcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHH-HhCCEEEEEeCCEEEeeC
Confidence 999999999999999999999999999999988789999999999876 579999999999998765
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. This model is related to models TIGR01842 and TIGR01846, and to bacteriocin ABC transporters that cleave their substrates during export. |
| >PRK13539 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-49 Score=330.32 Aligned_cols=198 Identities=30% Similarity=0.337 Sum_probs=169.5
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
||+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++.. . . .+
T Consensus 2 ~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~-~-----~-~~ 72 (207)
T PRK13539 2 MLEGEDLACVRGG--RVLFSGLSFTLAAGEALVLTGPNGSGKTTLLRLIAGLLPPAAGTIKLDGGDIDD-P-----D-VA 72 (207)
T ss_pred EEEEEeEEEEECC--eEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEeCcc-h-----h-hH
Confidence 6999999999964 469999999999999999999999999999999999999999999999987531 1 1 35
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
+.++|++|++. +++..|+.+|+.+.... .. . ....+.++++.+|+.+. .++++.+||||||||++|||||+
T Consensus 73 ~~~~~~~~~~~-~~~~~tv~~~l~~~~~~-~~-~-----~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrl~la~al~ 143 (207)
T PRK13539 73 EACHYLGHRNA-MKPALTVAENLEFWAAF-LG-G-----EELDIAAALEAVGLAPL-AHLPFGYLSAGQKRRVALARLLV 143 (207)
T ss_pred hhcEEecCCCc-CCCCCcHHHHHHHHHHh-cC-C-----cHHHHHHHHHHcCCHHH-HcCChhhcCHHHHHHHHHHHHHh
Confidence 67999998864 55678999999764211 01 0 11246788999999864 68999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-cCceEEEEecChhHHHhhccEEEEEeC
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLK-KELTILVVSHDLKEMAALVDHSWRMDM 234 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~~~tiii~tHd~~~~~~~~d~v~~l~~ 234 (245)
.+|+++||||||+|||+.+++.++++|++++ ++.|||++||+++++.. |+++.++.
T Consensus 144 ~~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tiii~sH~~~~~~~--~~~~~~~~ 200 (207)
T PRK13539 144 SNRPIWILDEPTAALDAAAVALFAELIRAHLAQGGIVIAATHIPLGLPG--ARELDLGP 200 (207)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCCchhhcc--CcEEeecC
Confidence 9999999999999999999999999999875 46899999999999876 99988854
|
|
| >cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-49 Score=321.50 Aligned_cols=171 Identities=35% Similarity=0.502 Sum_probs=150.2
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|++++|++....+++++||+|++|++++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..+++
T Consensus 1 l~~~~l~~~~~~~~~~~l~~i~~~i~~G~~~~l~G~nGsGKstLl~~i~G~~~~~~G~i~~~g~~~~~~~~----~~~~~ 76 (171)
T cd03228 1 IEFKNVSFSYPGRPKPVLKDVSLTIKPGEKVAIVGPSGSGKSTLLKLLLRLYDPTSGEILIDGVDLRDLDL----ESLRK 76 (171)
T ss_pred CEEEEEEEEcCCCCcccccceEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCCEEEECCEEhhhcCH----HHHHh
Confidence 47899999997532368999999999999999999999999999999999999999999999987643211 12246
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ 177 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~ 177 (245)
+++|+||++. ++ ..|+.||+ ||+|||||++|||||+.
T Consensus 77 ~i~~~~~~~~-~~-~~t~~e~l-----------------------------------------LS~G~~~rl~la~al~~ 113 (171)
T cd03228 77 NIAYVPQDPF-LF-SGTIRENI-----------------------------------------LSGGQRQRIAIARALLR 113 (171)
T ss_pred hEEEEcCCch-hc-cchHHHHh-----------------------------------------hCHHHHHHHHHHHHHhc
Confidence 7999999983 43 35776665 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCe
Q 035832 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGG 236 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~ 236 (245)
+|++|||||||+|||+.+++.+.++|+++.+++|||++|||++++.. ||++++|++|+
T Consensus 114 ~p~llllDEP~~gLD~~~~~~l~~~l~~~~~~~tii~~sh~~~~~~~-~d~~~~l~~g~ 171 (171)
T cd03228 114 DPPILILDEATSALDPETEALILEALRALAKGKTVIVIAHRLSTIRD-ADRIIVLDDGR 171 (171)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHhcCCCEEEEEecCHHHHHh-CCEEEEEcCCC
Confidence 99999999999999999999999999998767899999999999977 99999999885
|
They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK11160 cysteine/glutathione ABC transporter membrane/ATP-binding component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.8e-49 Score=374.95 Aligned_cols=210 Identities=28% Similarity=0.442 Sum_probs=177.9
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
..|+++|++|+|+++.+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+
T Consensus 337 ~~i~~~~v~f~y~~~~~~il~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~p~~G~I~i~g~~i~~~~~----~~~ 412 (574)
T PRK11160 337 VSLTLNNVSFTYPDQPQPVLKGLSLQIKAGEKVALLGRTGCGKSTLLQLLTRAWDPQQGEILLNGQPIADYSE----AAL 412 (574)
T ss_pred CeEEEEEEEEECCCCCCcceecceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEEhhhCCH----HHH
Confidence 3599999999997543579999999999999999999999999999999999999999999999998865432 234
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCcc---------CCCCCCCCChHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTS---------LDKDPHSLSGGYK 166 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---------~~~~~~~LSgGqk 166 (245)
++.++|+||++. +++.|++||+.++.+.. .++.+.++++.+++.+.. .......||||||
T Consensus 413 r~~i~~v~Q~~~--lf~~ti~~Ni~~~~~~~---------~~~~i~~al~~~~l~~~i~~p~GldT~vge~g~~LSgGqr 481 (574)
T PRK11160 413 RQAISVVSQRVH--LFSATLRDNLLLAAPNA---------SDEALIEVLQQVGLEKLLEDDKGLNAWLGEGGRQLSGGEQ 481 (574)
T ss_pred HhheeEEcccch--hhcccHHHHhhcCCCcc---------CHHHHHHHHHHcCCHHHHcCccccCchhcCCCCCCCHHHH
Confidence 678999999984 45689999999873211 122455667777765431 2235678999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 167 RRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 167 qrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||++||||++.+|++|||||||++||+.+.+.+.+.|.++.+++|+|++||+++.+. .||++++|++|+++..+
T Consensus 482 qRialARall~~~~ililDE~ts~lD~~t~~~i~~~l~~~~~~~tviiitHr~~~~~-~~d~i~~l~~G~i~~~g 555 (574)
T PRK11160 482 RRLGIARALLHDAPLLLLDEPTEGLDAETERQILELLAEHAQNKTVLMITHRLTGLE-QFDRICVMDNGQIIEQG 555 (574)
T ss_pred HHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecChhHHH-hCCEEEEEeCCeEEEeC
Confidence 999999999999999999999999999999999999999877899999999999875 59999999999998754
|
|
| >cd03213 ABCG_EPDR ABCG transporters are involved in eye pigment (EP) precursor transport, regulation of lipid-trafficking mechanisms, and pleiotropic drug resistance (DR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.3e-49 Score=325.26 Aligned_cols=183 Identities=31% Similarity=0.415 Sum_probs=160.6
Q ss_pred eEEEEeEEEECCCC----ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCC--CCCcceEEEcCccCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGT----QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLS--KPTSGSINIRGYNNDGEPNNS 90 (245)
Q Consensus 17 ~l~~~~l~~~y~~~----~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~--~p~~G~i~~~g~~~~~~~~~~ 90 (245)
.|+++|++++|++. .+++|+|+||++++||+++|+||||||||||+++|+|++ +|++|+|.++|+++...
T Consensus 3 ~l~~~~ls~~~~~~~~~~~~~~l~~~~~~i~~Ge~~~l~G~nGsGKStLl~~i~Gl~~~~~~~G~i~~~g~~~~~~---- 78 (194)
T cd03213 3 TLSFRNLTVTVKSSPSKSGKQLLKNVSGKAKPGELTAIMGPSGAGKSTLLNALAGRRTGLGVSGEVLINGRPLDKR---- 78 (194)
T ss_pred EEEEEeeEEEEecCCCcccccceecceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEeCchH----
Confidence 48999999999742 256999999999999999999999999999999999999 99999999999887421
Q ss_pred CCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHH
Q 035832 91 PEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLA 170 (245)
Q Consensus 91 ~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ 170 (245)
..++.++|+||++. +++..|+.+|+.++. .. . +||||||||++
T Consensus 79 ---~~~~~i~~~~q~~~-~~~~~t~~~~i~~~~---------------~~--------------~----~LS~G~~qrv~ 121 (194)
T cd03213 79 ---SFRKIIGYVPQDDI-LHPTLTVRETLMFAA---------------KL--------------R----GLSGGERKRVS 121 (194)
T ss_pred ---hhhheEEEccCccc-CCCCCcHHHHHHHHH---------------Hh--------------c----cCCHHHHHHHH
Confidence 23567999999984 566789999987530 00 0 89999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChh-HHHhhccEEEEEeCCeEEEe
Q 035832 171 LAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLK-EMAALVDHSWRMDMGGFLVE 240 (245)
Q Consensus 171 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~-~~~~~~d~v~~l~~G~i~~~ 240 (245)
|||||+.+|+++||||||++||+.+++.++++|+++.+ +.|+|++|||++ ++..+||++++|++|+++..
T Consensus 122 laral~~~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~~d~v~~l~~G~i~~~ 193 (194)
T cd03213 122 IALELVSNPSLLFLDEPTSGLDSSSALQVMSLLRRLADTGRTIICSIHQPSSEIFELFDKLLLLSQGRVIYF 193 (194)
T ss_pred HHHHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEecCchHHHHHhcCEEEEEeCCEEEec
Confidence 99999999999999999999999999999999999864 689999999996 68889999999999998754
|
DR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. Compared to other members of the ABC transporter subfamilies, the ABCG transporter family is composed of proteins that have an ATP-binding cassette domain at the N-terminus and a TM (transmembrane) domain at the C-terminus. |
| >PRK13540 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-49 Score=328.62 Aligned_cols=196 Identities=23% Similarity=0.279 Sum_probs=166.7
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
||+++|++++|++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++... ....+
T Consensus 1 ml~~~~l~~~~~~--~~il~~~s~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~-----~~~~~ 73 (200)
T PRK13540 1 MLDVIELDFDYHD--QPLLQQISFHLPAGGLLHLKGSNGAGKTTLLKLIAGLLNPEKGEILFERQSIKKD-----LCTYQ 73 (200)
T ss_pred CEEEEEEEEEeCC--eeEEeeeeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeeEEECCCccccC-----HHHHH
Confidence 5899999999964 4699999999999999999999999999999999999999999999999876421 11234
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
++++|++|++. +++..|+.+|+.++... .. ....+.++++.+++.+. .++++.+|||||+||++||||++
T Consensus 74 ~~i~~~~q~~~-~~~~~tv~~~~~~~~~~-~~-------~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~~rv~laral~ 143 (200)
T PRK13540 74 KQLCFVGHRSG-INPYLTLRENCLYDIHF-SP-------GAVGITELCRLFSLEHL-IDYPCGLLSSGQKRQVALLRLWM 143 (200)
T ss_pred hheEEeccccc-cCcCCCHHHHHHHHHhc-Cc-------chHHHHHHHHHcCCchh-hhCChhhcCHHHHHHHHHHHHHh
Confidence 67999999874 55678999999875211 10 12356788999999864 68899999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEE
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSW 230 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~ 230 (245)
.+|++|||||||++||+.+++.+.++|+++++ +.|||++||+.+.+. -||...
T Consensus 144 ~~p~~lilDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~-~~d~~~ 197 (200)
T PRK13540 144 SKAKLWLLDEPLVALDELSLLTIITKIQEHRAKGGAVLLTSHQDLPLN-KADYEE 197 (200)
T ss_pred cCCCEEEEeCCCcccCHHHHHHHHHHHHHHHHcCCEEEEEeCCchhcc-ccchhh
Confidence 99999999999999999999999999999854 689999999998875 477644
|
|
| >cd03250 ABCC_MRP_domain1 Domain 1 of the ABC subfamily C | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-48 Score=325.43 Aligned_cols=196 Identities=25% Similarity=0.393 Sum_probs=157.8
Q ss_pred EEEEeEEEECCCCc---cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQ---VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 18 l~~~~l~~~y~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
|+++||+++|++.. +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 1 l~~~~l~~~~~~~~~~~~~il~~~s~~i~~G~~~~i~G~nG~GKSTLl~~i~G~~~~~~G~i~~~g-------------- 66 (204)
T cd03250 1 ISVEDASFTWDSGEQETSFTLKDINLEVPKGELVAIVGPVGSGKSSLLSALLGELEKLSGSVSVPG-------------- 66 (204)
T ss_pred CEEeEEEEecCCCCccccceeeeeeEEECCCCEEEEECCCCCCHHHHHHHHhCcCCCCCCeEEEcC--------------
Confidence 47899999997532 3699999999999999999999999999999999999999999999976
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHH-HHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLA-LNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLAL 171 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~-~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~i 171 (245)
+++|+||++. ++ +.|++||+.+.... .........+ ..+.+.+..+ +++.. .++.+.+||+|||||++|
T Consensus 67 ---~i~~~~q~~~-l~-~~t~~enl~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~-~~~~~~~lS~G~~qrv~l 138 (204)
T cd03250 67 ---SIAYVSQEPW-IQ-NGTIRENILFGKPF--DEERYEKVIKACALEPDLEILPDGDLTE-IGEKGINLSGGQKQRISL 138 (204)
T ss_pred ---EEEEEecCch-hc-cCcHHHHhccCCCc--CHHHHHHHHHHcCcHHHHHhccCcccce-ecCCCCcCCHHHHHHHHH
Confidence 4999999985 44 67999999885221 1000000000 0122233333 34433 567789999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCe
Q 035832 172 AIQLVQVPDLLILDEPLAGLDWKARADVVK-LLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGG 236 (245)
Q Consensus 172 Aral~~~p~llllDEPts~LD~~~~~~i~~-~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~ 236 (245)
||||+.+|+++||||||++||+.+++.+++ +++.+.+ +.|||++||+++.+.. ||++++|++|+
T Consensus 139 aral~~~p~llllDEP~~~LD~~~~~~l~~~ll~~~~~~~~tvi~~sh~~~~~~~-~d~i~~l~~G~ 204 (204)
T cd03250 139 ARAVYSDADIYLLDDPLSAVDAHVGRHIFENCILGLLLNNKTRILVTHQLQLLPH-ADQIVVLDNGR 204 (204)
T ss_pred HHHHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhccCCCEEEEEeCCHHHHhh-CCEEEEEeCCC
Confidence 999999999999999999999999999998 4666644 5899999999999887 99999999885
|
This family is also known as MRP (mulrtidrug resisitance-associated protein). Some of the MRP members have five additional transmembrane segments in their N-terminas, but the function of these additional membrane-spanning domains is not clear. The MRP was found in the multidrug-resisting lung cancer cell in which p-glycoprotein was not overexpressed. MRP exports glutathione by drug stimulation, as well as, certain substrates in conjugated forms with anions, such as glutathione, glucuronate, and sulfate. |
| >PRK10790 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-49 Score=374.63 Aligned_cols=214 Identities=28% Similarity=0.401 Sum_probs=173.7
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.|+++|++++|+++ .++|+|+||+|++||.++|+|+||||||||+++|+|+++|++|+|.+||.++...+. ..++
T Consensus 340 ~i~~~~v~f~y~~~-~~il~~i~l~i~~Ge~iaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~----~~l~ 414 (592)
T PRK10790 340 RIDIDNVSFAYRDD-NLVLQNINLSVPSRGFVALVGHTGSGKSTLASLLMGYYPLTEGEIRLDGRPLSSLSH----SVLR 414 (592)
T ss_pred eEEEEEEEEEeCCC-CceeeceeEEEcCCCEEEEECCCCCCHHHHHHHHhcccCCCCceEEECCEEhhhCCH----HHHH
Confidence 59999999999753 579999999999999999999999999999999999999999999999998864332 2346
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHH-HHHHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKE-YLALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
++|+|+||+|. +++.|+++|+.++. . ........ .....+.+.++.+ |++.. .......||||||||++|||
T Consensus 415 ~~i~~v~Q~~~--lF~~Ti~~NI~~~~-~-~~d~~i~~a~~~~gl~~~i~~lp~Gldt~-i~e~g~~LSGGqrQRialAR 489 (592)
T PRK10790 415 QGVAMVQQDPV--VLADTFLANVTLGR-D-ISEEQVWQALETVQLAELARSLPDGLYTP-LGEQGNNLSVGQKQLLALAR 489 (592)
T ss_pred hheEEEccCCc--cccchHHHHHHhCC-C-CCHHHHHHHHHHcCcHHHHHhcccccccc-ccCCCCCCCHHHHHHHHHHH
Confidence 88999999984 45679999999973 1 11000000 0011123333333 34432 35566789999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||+.+|++||||||||+||+.+.+.+.+.|+++.+++|+|++||+++.+. .||+|++|++|+++..+
T Consensus 490 aLl~~~~illlDEpts~LD~~t~~~i~~~l~~~~~~~tvIivtHr~~~l~-~~D~ii~l~~G~i~~~G 556 (592)
T PRK10790 490 VLVQTPQILILDEATANIDSGTEQAIQQALAAVREHTTLVVIAHRLSTIV-EADTILVLHRGQAVEQG 556 (592)
T ss_pred HHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHhCCCEEEEEecchHHHH-hCCEEEEEECCEEEEEc
Confidence 99999999999999999999999999999999877899999999998765 69999999999998754
|
|
| >PRK10762 D-ribose transporter ATP binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-49 Score=369.08 Aligned_cols=217 Identities=23% Similarity=0.292 Sum_probs=179.7
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
.++|+++|+++ .+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..... ...
T Consensus 255 ~~~l~~~~l~~-------~~l~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~G~~~p~~G~I~~~g~~i~~~~~---~~~ 324 (501)
T PRK10762 255 EVRLKVDNLSG-------PGVNDVSFTLRKGEILGVSGLMGAGRTELMKVLYGALPRTSGYVTLDGHEVVTRSP---QDG 324 (501)
T ss_pred CcEEEEeCccc-------CCcccceEEEcCCcEEEEecCCCCCHHHHHHHHhCCCCCCceEEEECCEECCCCCH---HHH
Confidence 45899999984 26999999999999999999999999999999999999999999999988743211 011
Q ss_pred CCCcEEEEecCCC--CCCCcccHHHHHHhcCCCCC-C--chhHHHHHHHHHHHHHHHcCCC-CccCCCCCCCCChHHHHH
Q 035832 95 PPEKVGIVFQFPE--RYFVADNVLDEVIFGWPRQS-G--SIQLKEYLALNLQRAINWVGLD-GTSLDKDPHSLSGGYKRR 168 (245)
Q Consensus 95 ~~~~i~~v~Q~~~--~~~~~~tv~e~l~~~~~~~~-~--~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~LSgGqkqr 168 (245)
.++++||+||++. .+++.+|+.+|+.++..... . ...........+.++++.+++. +. .++++.+||||||||
T Consensus 325 ~~~~i~~v~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~LSgGekqr 403 (501)
T PRK10762 325 LANGIVYISEDRKRDGLVLGMSVKENMSLTALRYFSRAGGSLKHADEQQAVSDFIRLFNIKTPS-MEQAIGLLSGGNQQK 403 (501)
T ss_pred HHCCCEEecCccccCCCcCCCcHHHHhhhhhhhhhcccccccCHHHHHHHHHHHHHhcCCCCCC-ccCchhhCCHHHHHH
Confidence 2457999999973 35677899999987521100 0 0001122344678899999995 44 699999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 169 LALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 169 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
|+|||||+.+|++|||||||+|||+.+++.++++|+++.+ +.|||++|||++++..+||++++|++|+++....
T Consensus 404 v~lA~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~~~ 478 (501)
T PRK10762 404 VAIARGLMTRPKVLILDEPTRGVDVGAKKEIYQLINQFKAEGLSIILVSSEMPEVLGMSDRILVMHEGRISGEFT 478 (501)
T ss_pred HHHHHHHhhCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHhhCCEEEEEECCEEEEEec
Confidence 9999999999999999999999999999999999999864 6899999999999999999999999999986543
|
|
| >TIGR01189 ccmA heme ABC exporter, ATP-binding protein CcmA | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.7e-49 Score=327.12 Aligned_cols=196 Identities=29% Similarity=0.360 Sum_probs=165.7
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|+++.|++ +.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... ..+++
T Consensus 1 l~~~~l~~~~~~--~~~l~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~~~-----~~~~~ 73 (198)
T TIGR01189 1 LAARNLACSRGE--RMLFEGLSFTLNAGEALQVTGPNGIGKTTLLRILAGLLRPDSGEVRWNGTALAEQR-----DEPHR 73 (198)
T ss_pred CEEEEEEEEECC--EEEEeeeeEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccch-----HHhhh
Confidence 578999999964 46999999999999999999999999999999999999999999999998865321 12346
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ 177 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~ 177 (245)
.++|++|++. +++..|+.+|+.+..... . . . ...+.++++.+++.+. .++++.+||||||||++||||++.
T Consensus 74 ~i~~~~q~~~-~~~~~tv~~~l~~~~~~~-~----~-~-~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrv~la~al~~ 144 (198)
T TIGR01189 74 NILYLGHLPG-LKPELSALENLHFWAAIH-G----G-A-QRTIEDALAAVGLTGF-EDLPAAQLSAGQQRRLALARLWLS 144 (198)
T ss_pred heEEeccCcc-cccCCcHHHHHHHHHHHc-C----C-c-HHHHHHHHHHcCCHHH-hcCChhhcCHHHHHHHHHHHHHhc
Confidence 7999999874 566689999998742111 1 0 1 2346788999999875 689999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-cCceEEEEecChhHHHhhccEEEE
Q 035832 178 VPDLLILDEPLAGLDWKARADVVKLLKHLK-KELTILVVSHDLKEMAALVDHSWR 231 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~~~~i~~~l~~l~-~~~tiii~tHd~~~~~~~~d~v~~ 231 (245)
+|+++||||||++||+.+++.+++.|.++. ++.|||++||+...+ .|++++.
T Consensus 145 ~p~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~tii~~sH~~~~~--~~~~~~~ 197 (198)
T TIGR01189 145 RAPLWILDEPTTALDKAGVALLAGLLRAHLARGGIVLLTTHQDLGL--VEARELR 197 (198)
T ss_pred CCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEEcccccc--cceEEee
Confidence 999999999999999999999999999985 468999999998654 5688764
|
This model describes the cyt c biogenesis protein encoded by ccmA in bacteria. An exception is, an arabidopsis protein. Quite likely this is encoded by an organelle. Bacterial c-type cytocromes are located on the periplasmic side of the cytoplasmic membrane. Several gene products encoded in a locus designated as 'ccm' are implicated in the transport and assembly of the functional cytochrome C. This cluster includes genes: ccmA;B;C;D;E;F;G and H. The posttranslational pathway includes the transport of heme moiety, the secretion of the apoprotein and the covalent attachment of the heme with the apoprotein. The proteins ccmA and B represent an ABC transporter; ccmC and D participate in heme transfer to ccmE, which function as a periplasmic heme chaperone. The presence of ccmF, G and H is suggested to be obligatory for the final functional assembly of cytochrome c. |
| >COG1132 MdlB ABC-type multidrug transport system, ATPase and permease components [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-49 Score=373.74 Aligned_cols=217 Identities=31% Similarity=0.441 Sum_probs=179.6
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.|+++|++|+|++ ++++|+|+||++++||.+||+||||||||||+++|+|+++|++|+|.+||+++..... ..+|
T Consensus 328 ~I~f~~vsf~y~~-~~~vl~~is~~i~~Ge~vaiVG~sGsGKSTl~~LL~r~~~~~~G~I~idg~dI~~i~~----~~lr 402 (567)
T COG1132 328 SIEFENVSFSYPG-KKPVLKDISFSIEPGEKVAIVGPSGSGKSTLIKLLLRLYDPTSGEILIDGIDIRDISL----DSLR 402 (567)
T ss_pred eEEEEEEEEEcCC-CCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCEehhhcCH----HHHH
Confidence 3999999999974 3579999999999999999999999999999999999999999999999999876433 2357
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
++|+||||++. + +..|+++|+.++.+......-.+......+.+.++.+ |++.. .......||||||||++||||
T Consensus 403 ~~I~~V~Qd~~-L-F~~TI~~NI~~g~~~at~eei~~a~k~a~~~d~I~~lp~g~dt~-vge~G~~LSgGQrQrlaiARa 479 (567)
T COG1132 403 KRIGIVSQDPL-L-FSGTIRENIALGRPDATDEEIEEALKLANAHEFIANLPDGYDTI-VGERGVNLSGGQRQRLAIARA 479 (567)
T ss_pred HhccEEcccce-e-ecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCcccccce-ecCCCccCCHHHHHHHHHHHH
Confidence 88999999984 4 4689999999985432111000111111245556665 56654 566778999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
++.+|++|+||||||+||+.+...+.+.+.++.+++|+|+|+|++..+.. ||+|++|++|++++.++
T Consensus 480 ll~~~~ILILDEaTSalD~~tE~~I~~~l~~l~~~rT~iiIaHRlsti~~-aD~IiVl~~G~i~e~G~ 546 (567)
T COG1132 480 LLRNPPILILDEATSALDTETEALIQDALKKLLKGRTTLIIAHRLSTIKN-ADRIIVLDNGRIVERGT 546 (567)
T ss_pred HhcCCCEEEEeccccccCHHhHHHHHHHHHHHhcCCEEEEEeccHhHHHh-CCEEEEEECCEEEEecC
Confidence 99999999999999999999999999999988777899999999998876 99999999999776553
|
|
| >PRK11288 araG L-arabinose transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.9e-49 Score=368.26 Aligned_cols=218 Identities=22% Similarity=0.282 Sum_probs=179.8
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
.+.++++|+++. .+++|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++..... ...
T Consensus 255 ~~~l~~~~~~~~------~~l~~isl~i~~Ge~~~iiG~NGsGKSTLlk~l~G~~~p~~G~i~~~g~~~~~~~~---~~~ 325 (501)
T PRK11288 255 EVRLRLDGLKGP------GLREPISFSVRAGEIVGLFGLVGAGRSELMKLLYGATRRTAGQVYLDGKPIDIRSP---RDA 325 (501)
T ss_pred CcEEEEeccccC------CcccceeEEEeCCcEEEEEcCCCCCHHHHHHHHcCCCcCCCceEEECCEECCCCCH---HHH
Confidence 346999999732 37999999999999999999999999999999999999999999999987642211 111
Q ss_pred CCCcEEEEecCCC--CCCCcccHHHHHHhcCCCCCC--c-hhHHHHHHHHHHHHHHHcCCC-CccCCCCCCCCChHHHHH
Q 035832 95 PPEKVGIVFQFPE--RYFVADNVLDEVIFGWPRQSG--S-IQLKEYLALNLQRAINWVGLD-GTSLDKDPHSLSGGYKRR 168 (245)
Q Consensus 95 ~~~~i~~v~Q~~~--~~~~~~tv~e~l~~~~~~~~~--~-~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~LSgGqkqr 168 (245)
.+++++|+||++. .+++..|+.||+.++...... . ........+.+.++++.+++. +. .++++.+||||||||
T Consensus 326 ~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~LSgGq~qr 404 (501)
T PRK11288 326 IRAGIMLCPEDRKAEGIIPVHSVADNINISARRHHLRAGCLINNRWEAENADRFIRSLNIKTPS-REQLIMNLSGGNQQK 404 (501)
T ss_pred HhCCCEEcCcCHhhCCCcCCCCHHHHhccccchhhcccccccChHHHHHHHHHHHHhcCcccCC-ccCccccCCHHHHHH
Confidence 2467999999963 356778999999875321100 0 001112234578899999994 44 699999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 169 LALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 169 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
|+|||||+.+|++|||||||+|||+.++++++++|.++++ +.|||++|||++++..+||++++|++|++++++.
T Consensus 405 l~la~al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~l~~~g~tviivsHd~~~~~~~~d~i~~l~~g~i~~~~~ 479 (501)
T PRK11288 405 AILGRWLSEDMKVILLDEPTRGIDVGAKHEIYNVIYELAAQGVAVLFVSSDLPEVLGVADRIVVMREGRIAGELA 479 (501)
T ss_pred HHHHHHHccCCCEEEEcCCCCCCCHhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHhhCCEEEEEECCEEEEEEc
Confidence 9999999999999999999999999999999999999865 6899999999999999999999999999987653
|
|
| >KOG0058 consensus Peptide exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.2e-49 Score=369.23 Aligned_cols=217 Identities=28% Similarity=0.399 Sum_probs=180.3
Q ss_pred eEEEEeEEEECCCC-ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGT-QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 17 ~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
.|+++||+|.|+.+ +.++|+|+||+|+|||++||+||||+||||+.++|..++.|++|+|.+||.|+...+ ..++
T Consensus 465 ~IeF~~VsFaYP~Rp~~~Vlk~lsfti~pGe~vALVGPSGsGKSTiasLL~rfY~PtsG~IllDG~~i~~~~----~~~l 540 (716)
T KOG0058|consen 465 VIEFEDVSFAYPTRPDVPVLKNLSFTIRPGEVVALVGPSGSGKSTIASLLLRFYDPTSGRILLDGVPISDIN----HKYL 540 (716)
T ss_pred eEEEEEeeeecCCCCCchhhcCceeeeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCeehhhcC----HHHH
Confidence 59999999999864 457999999999999999999999999999999999999999999999999986543 2345
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
+++||+|-|+|. ++..|+.|||.+|........-........+.+.+..+ |.+.. -..+..+||||||||+||||
T Consensus 541 r~~Ig~V~QEPv--LFs~sI~eNI~YG~~~~t~e~i~~AAk~ANah~FI~~~p~gY~T~-VGEkG~qLSGGQKQRIAIAR 617 (716)
T KOG0058|consen 541 RRKIGLVGQEPV--LFSGSIRENIAYGLDNATDEEIEAAAKMANAHEFITNFPDGYNTV-VGEKGSQLSGGQKQRIAIAR 617 (716)
T ss_pred HHHeeeeeccce--eecccHHHHHhcCCCCCCHHHHHHHHHHhChHHHHHhCccccccc-cCCccccccchHHHHHHHHH
Confidence 789999999994 45789999999996522110000111122244455444 33332 46778899999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||+.||.+|||||.||+||.++...+.+.|.++.++.|||+|.|.+..++ .+|+|+++++|+++..+
T Consensus 618 ALlr~P~VLILDEATSALDaeSE~lVq~aL~~~~~~rTVlvIAHRLSTV~-~Ad~Ivvi~~G~V~E~G 684 (716)
T KOG0058|consen 618 ALLRNPRVLILDEATSALDAESEYLVQEALDRLMQGRTVLVIAHRLSTVR-HADQIVVIDKGRVVEMG 684 (716)
T ss_pred HHhcCCCEEEEechhhhcchhhHHHHHHHHHHhhcCCeEEEEehhhhHhh-hccEEEEEcCCeEEecc
Confidence 99999999999999999999999999999999988899999999999885 68999999999997654
|
|
| >PRK13657 cyclic beta-1,2-glucan ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-48 Score=372.46 Aligned_cols=216 Identities=27% Similarity=0.368 Sum_probs=174.9
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.|+++|++|+|+++ .++|+|+||++++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+. ..++
T Consensus 334 ~I~~~~vsf~y~~~-~~iL~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~p~~G~I~i~g~~i~~~~~----~~~r 408 (588)
T PRK13657 334 AVEFDDVSFSYDNS-RQGVEDVSFEAKPGQTVAIVGPTGAGKSTLINLLQRVFDPQSGRILIDGTDIRTVTR----ASLR 408 (588)
T ss_pred eEEEEEEEEEeCCC-CceecceeEEECCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEhhhCCH----HHHH
Confidence 59999999999743 469999999999999999999999999999999999999999999999998865332 2346
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
++|+|+||+|. ++..|++||+.++.+...............+.+.++.+ |++.. .......||||||||++||||
T Consensus 409 ~~i~~v~Q~~~--lf~~Ti~~Ni~~~~~~~~d~~i~~al~~~~l~~~i~~lp~gldt~-i~~~g~~LSgGq~QRialARa 485 (588)
T PRK13657 409 RNIAVVFQDAG--LFNRSIEDNIRVGRPDATDEEMRAAAERAQAHDFIERKPDGYDTV-VGERGRQLSGGERQRLAIARA 485 (588)
T ss_pred hheEEEecCcc--cccccHHHHHhcCCCCCCHHHHHHHHHHhCHHHHHHhCcccccch-hcCCCCCCCHHHHHHHHHHHH
Confidence 78999999984 45789999999873221100000000111233444443 44433 355667899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|+.+|+++|||||||+||+.+.+.+++.|.++.+++|+|+|||+++.+ +.||++++|++|+++..+
T Consensus 486 ll~~~~iliLDEpts~LD~~t~~~i~~~l~~~~~~~tvIiitHr~~~~-~~~D~ii~l~~G~i~~~g 551 (588)
T PRK13657 486 LLKDPPILILDEATSALDVETEAKVKAALDELMKGRTTFIIAHRLSTV-RNADRILVFDNGRVVESG 551 (588)
T ss_pred HhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhcCCEEEEEEecHHHH-HhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999887789999999999876 579999999999998654
|
|
| >cd03232 ABC_PDR_domain2 The pleiotropic drug resistance-like (PDR) family of ATP-binding cassette (ABC) transporters | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-48 Score=323.65 Aligned_cols=182 Identities=29% Similarity=0.379 Sum_probs=158.9
Q ss_pred eEEEEeEEEECCCC--ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCC--CCCcceEEEcCccCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGT--QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLS--KPTSGSINIRGYNNDGEPNNSPE 92 (245)
Q Consensus 17 ~l~~~~l~~~y~~~--~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~--~p~~G~i~~~g~~~~~~~~~~~~ 92 (245)
.|+++|+++.|++. .+++|+++||++++||+++|+||||||||||+++|+|+. +|++|+|.++|+++..
T Consensus 3 ~l~~~~l~~~~~~~~~~~~~l~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~~~G~i~~~g~~~~~------- 75 (192)
T cd03232 3 VLTWKNLNYTVPVKGGKRQLLNNISGYVKPGTLTALMGESGAGKTTLLDVLAGRKTAGVITGEILINGRPLDK------- 75 (192)
T ss_pred EEEEeeeEEEecCCCCceEeEEccEEEEeCCcEEEEECCCCCCHHHHHHHHhCCCcCCCcceEEEECCEehHH-------
Confidence 58999999999641 246999999999999999999999999999999999986 4899999999987631
Q ss_pred CCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHH
Q 035832 93 PLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALA 172 (245)
Q Consensus 93 ~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iA 172 (245)
.++++++|++|++. +++..|+++|+.++. . + + +|||||+||++||
T Consensus 76 -~~~~~i~~~~q~~~-~~~~~tv~~~l~~~~-----------~--------~----------~----~LSgGe~qrv~la 120 (192)
T cd03232 76 -NFQRSTGYVEQQDV-HSPNLTVREALRFSA-----------L--------L----------R----GLSVEQRKRLTIG 120 (192)
T ss_pred -HhhhceEEecccCc-cccCCcHHHHHHHHH-----------H--------H----------h----cCCHHHhHHHHHH
Confidence 12467999999974 566789999997631 0 0 0 8999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChh-HHHhhccEEEEEeC-CeEEEe
Q 035832 173 IQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLK-EMAALVDHSWRMDM-GGFLVE 240 (245)
Q Consensus 173 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~-~~~~~~d~v~~l~~-G~i~~~ 240 (245)
|||+.+|+++||||||++||+.+++.+++.|+++++ +.|||++||+++ ++..+||++++|++ |+++..
T Consensus 121 ~al~~~p~vlllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiiivtH~~~~~~~~~~d~i~~l~~~g~i~~~ 191 (192)
T cd03232 121 VELAAKPSILFLDEPTSGLDSQAAYNIVRFLKKLADSGQAILCTIHQPSASIFEKFDRLLLLKRGGKTVYF 191 (192)
T ss_pred HHHhcCCcEEEEeCCCcCCCHHHHHHHHHHHHHHHHcCCEEEEEEcCChHHHHhhCCEEEEEcCCCeEEeC
Confidence 999999999999999999999999999999999864 689999999998 47889999999999 998764
|
PDR is a well-described phenomenon occurring in fungi and shares several similarities with processes in bacteria and higher eukaryotes. This PDR subfamily represents domain I of its (ABC-IM)2 organization. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >TIGR01166 cbiO cobalt transport protein ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.5e-49 Score=325.12 Aligned_cols=184 Identities=33% Similarity=0.543 Sum_probs=152.1
Q ss_pred cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCC
Q 035832 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFV 111 (245)
Q Consensus 32 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~ 111 (245)
+.+|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.... . ....+++.++|+||++...++
T Consensus 5 ~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~-~-~~~~~~~~i~~~~q~~~~~~~ 82 (190)
T TIGR01166 5 PEVLKGLNFAAERGEVLALLGANGAGKSTLLLHLNGLLRPQSGAVLIDGEPLDYSR-K-GLLERRQRVGLVFQDPDDQLF 82 (190)
T ss_pred cceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceeEEECCEEccccc-c-chHHHHhhEEEEecChhhccc
Confidence 46999999999999999999999999999999999999999999999998874211 1 111234679999999742334
Q ss_pred cccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 035832 112 ADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGL 191 (245)
Q Consensus 112 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~L 191 (245)
..|+.||+.++.... . . ......+++.++++.+++.+. .++++.+||||||||++|||||+.+|+++||||||+||
T Consensus 83 ~~tv~~nl~~~~~~~-~-~-~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrv~laral~~~p~llllDEPt~~L 158 (190)
T TIGR01166 83 AADVDQDVAFGPLNL-G-L-SEAEVERRVREALTAVGASGL-RERPTHCLSGGEKKRVAIAGAVAMRPDVLLLDEPTAGL 158 (190)
T ss_pred cccHHHHHHHHHHHc-C-C-CHHHHHHHHHHHHHHcCchhh-hhCChhhCCHHHHHHHHHHHHHhcCCCEEEEcCCcccC
Confidence 579999998752111 1 1 112233457788999999875 69999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhhc-CceEEEEecChhH
Q 035832 192 DWKARADVVKLLKHLKK-ELTILVVSHDLKE 221 (245)
Q Consensus 192 D~~~~~~i~~~l~~l~~-~~tiii~tHd~~~ 221 (245)
|+.+++.+.++|+++++ +.|||++|||+++
T Consensus 159 D~~~~~~~~~~l~~~~~~~~tili~sH~~~~ 189 (190)
T TIGR01166 159 DPAGREQMLAILRRLRAEGMTVVISTHDVDL 189 (190)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEeecccc
Confidence 99999999999999864 6899999999875
|
This model describes the ATP binding subunit of the multisubunit cobalt transporter in bacteria and its equivalents in archaea. The model is restricted to ATP subunit that is a part of the cobalt transporter, which belongs to the ABC transporter superfamily (ATP Binding Cassette). The model excludes ATP binding subunit that are associated with other transporters belonging to ABC transporter superfamily. This superfamily includes two groups, one which catalyze the uptake of small molecules, including ions from the external milieu and the other group which is engaged in the efflux of small molecular weight compounds and ions from within the cell. Energy derived from the hydrolysis of ATP drive the both the process of uptake and efflux. |
| >PRK15439 autoinducer 2 ABC transporter ATP-binding protein LsrA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.9e-49 Score=368.10 Aligned_cols=217 Identities=21% Similarity=0.288 Sum_probs=177.9
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
+.++|+++|+++ .+|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.++...+.. .
T Consensus 265 ~~~~l~~~~l~~-------~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~Gl~~p~~G~i~~~g~~i~~~~~~---~ 334 (510)
T PRK15439 265 GAPVLTVEDLTG-------EGFRNISLEVRAGEILGLAGVVGAGRTELAETLYGLRPARGGRIMLNGKEINALSTA---Q 334 (510)
T ss_pred CCceEEEeCCCC-------CCccceeEEEcCCcEEEEECCCCCCHHHHHHHHcCCCCCCCcEEEECCEECCCCCHH---H
Confidence 355899999983 159999999999999999999999999999999999999999999999877432110 1
Q ss_pred CCCCcEEEEecCCC--CCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCC-CccCCCCCCCCChHHHHHHH
Q 035832 94 LPPEKVGIVFQFPE--RYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLD-GTSLDKDPHSLSGGYKRRLA 170 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~--~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~LSgGqkqrv~ 170 (245)
..+++++|+||++. .+++..|+.+|+.................++.+.++++.+++. +. +++++.+|||||||||+
T Consensus 335 ~~~~~i~~v~q~~~~~~l~~~~t~~~~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~LSgG~kqrl~ 413 (510)
T PRK15439 335 RLARGLVYLPEDRQSSGLYLDAPLAWNVCALTHNRRGFWIKPARENAVLERYRRALNIKFNH-AEQAARTLSGGNQQKVL 413 (510)
T ss_pred HHhCCcEECCCChhhCCccCCCcHHHHHHhhhhhhhccccChHHHHHHHHHHHHHcCCCCCC-ccCccccCCcHHHHHHH
Confidence 12357999999852 3566789999986421000000000112234578899999996 54 69999999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 171 LAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 171 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|||||+.+|++|||||||+|||+.+++.++++|+++++ +.|||++|||++++..+||++++|++|+++.+.
T Consensus 414 la~al~~~p~lLlLDEPt~gLD~~~~~~l~~~l~~l~~~g~tiIivsHd~~~i~~~~d~i~~l~~G~i~~~~ 485 (510)
T PRK15439 414 IAKCLEASPQLLIVDEPTRGVDVSARNDIYQLIRSIAAQNVAVLFISSDLEEIEQMADRVLVMHQGEISGAL 485 (510)
T ss_pred HHHHHhhCCCEEEECCCCcCcChhHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEE
Confidence 99999999999999999999999999999999999864 689999999999999999999999999998765
|
|
| >cd03290 ABCC_SUR1_N The SUR domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-48 Score=327.44 Aligned_cols=204 Identities=23% Similarity=0.380 Sum_probs=161.7
Q ss_pred EEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCc
Q 035832 19 EVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEK 98 (245)
Q Consensus 19 ~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ 98 (245)
.+.|+.++|++. .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...........+++.
T Consensus 2 ~~~~~~~~~~~~-~~il~~vs~~i~~Ge~~~i~G~nGsGKSTLl~~i~G~~~~~~G~i~~~g~~~~~~~~~~~~~~~~~~ 80 (218)
T cd03290 2 QVTNGYFSWGSG-LATLSNINIRIPTGQLTMIVGQVGCGKSSLLLAILGEMQTLEGKVHWSNKNESEPSFEATRSRNRYS 80 (218)
T ss_pred eeeeeEEecCCC-CcceeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhccCCCCCCeEEECCcccccccccccchhhcce
Confidence 578999999754 5699999999999999999999999999999999999999999999999876432211011123467
Q ss_pred EEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC----------ccCCCCCCCCChHHHHH
Q 035832 99 VGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG----------TSLDKDPHSLSGGYKRR 168 (245)
Q Consensus 99 i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGqkqr 168 (245)
++|+||++. ++ ..|+++|+.+.... . .. ...++++.+++.+ ..+++++.+||||||||
T Consensus 81 i~~~~q~~~-~~-~~t~~~nl~~~~~~--~----~~----~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LS~G~~qr 148 (218)
T cd03290 81 VAYAAQKPW-LL-NATVEENITFGSPF--N----KQ----RYKAVTDACSLQPDIDLLPFGDQTEIGERGINLSGGQRQR 148 (218)
T ss_pred EEEEcCCCc-cc-cccHHHHHhhcCcC--C----HH----HHHHHHHHhCcHHHHHhCcCccccCcccCCCcCCHHHHHH
Confidence 999999984 44 67999999875211 1 11 1122233333321 11356789999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH--HHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCe
Q 035832 169 LALAIQLVQVPDLLILDEPLAGLDWKARADVVK--LLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGG 236 (245)
Q Consensus 169 v~iAral~~~p~llllDEPts~LD~~~~~~i~~--~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~ 236 (245)
|+|||||+.+|+++||||||++||+.+++.+++ +++.+++ +.|+|++||+++.+. .||++++|++|.
T Consensus 149 v~laral~~~p~illlDEPt~~LD~~~~~~l~~~~ll~~~~~~~~tii~~sH~~~~~~-~~d~i~~l~~G~ 218 (218)
T cd03290 149 ICVARALYQNTNIVFLDDPFSALDIHLSDHLMQEGILKFLQDDKRTLVLVTHKLQYLP-HADWIIAMKDGS 218 (218)
T ss_pred HHHHHHHhhCCCEEEEeCCccccCHHHHHHHHHHHHHHHHhcCCCEEEEEeCChHHHh-hCCEEEEecCCC
Confidence 999999999999999999999999999999998 6666654 589999999999885 699999999873
|
The sulfonylurea receptor SUR is an ATP transporter of the ABCC/MRP family with tandem ATPase binding domains. Unlike other ABC proteins, it has no intrinsic transport function, neither active nor passive, but associates with the potassium channel proteins Kir6.1 or Kir6.2 to form the ATP-sensitive potassium (K(ATP)) channel. Within the channel complex, SUR serves as a regulatory subunit that fine-tunes the gating of Kir6.x in response to alterations in cellular metabolism. It constitutes a major pharmaceutical target as it binds numerous drugs, K(ATP) channel openers and blockers, capable of up- or down-regulating channel activity. |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-48 Score=403.18 Aligned_cols=217 Identities=24% Similarity=0.363 Sum_probs=188.0
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
+.|+++||++.|+++.+.+++|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|.++... ....
T Consensus 927 ~~L~I~nLsK~y~~~~k~aL~~lsl~I~~Gei~aLLG~NGAGKSTLLkiLaGLl~PtsG~I~i~G~dI~~~-----~~~~ 1001 (2272)
T TIGR01257 927 PGVCVKNLVKIFEPSGRPAVDRLNITFYENQITAFLGHNGAGKTTTLSILTGLLPPTSGTVLVGGKDIETN-----LDAV 1001 (2272)
T ss_pred ceEEEEeEEEEecCCCceEEEeeEEEEcCCcEEEEECCCCChHHHHHHHHhcCCCCCceEEEECCEECcch-----HHHH
Confidence 47999999999963335799999999999999999999999999999999999999999999999987431 1123
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
++.+||+||++. +++.+||+||+.+..... +. .....++++.++++.+||.+. .++++.+|||||||||+|||||
T Consensus 1002 r~~IG~~pQ~~~-L~~~LTV~E~L~f~~~lk-g~--~~~~~~~~v~~lL~~vgL~~~-~~~~~~~LSGGqKQRLsLArAL 1076 (2272)
T TIGR01257 1002 RQSLGMCPQHNI-LFHHLTVAEHILFYAQLK-GR--SWEEAQLEMEAMLEDTGLHHK-RNEEAQDLSGGMQRKLSVAIAF 1076 (2272)
T ss_pred hhcEEEEecCCc-CCCCCCHHHHHHHHHHhc-CC--CHHHHHHHHHHHHHHcCCchh-hcCChhhCCHHHHHHHHHHHHH
Confidence 567999999974 677899999998852211 11 112334567889999999875 7999999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
+.+|++|||||||+|||+.+++.++++|+++++++|||++||+++++..+|||+++|++|+++..+.
T Consensus 1077 i~~PkVLLLDEPTSGLDp~sr~~l~~lL~~l~~g~TIIltTHdmdea~~laDrI~iL~~GkL~~~Gs 1143 (2272)
T TIGR01257 1077 VGDAKVVVLDEPTSGVDPYSRRSIWDLLLKYRSGRTIIMSTHHMDEADLLGDRIAIISQGRLYCSGT 1143 (2272)
T ss_pred HcCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEecC
Confidence 9999999999999999999999999999999777999999999999999999999999999987653
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >TIGR01842 type_I_sec_PrtD type I secretion system ABC transporter, PrtD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-48 Score=367.36 Aligned_cols=217 Identities=28% Similarity=0.389 Sum_probs=178.0
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.++++|++++|+++.+++|+|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..++
T Consensus 316 ~i~~~~v~~~y~~~~~~~l~~~~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~i~~~~~----~~~~ 391 (544)
T TIGR01842 316 HLSVENVTIVPPGGKKPTLRGISFRLQAGEALAIIGPSGSGKSTLARLIVGIWPPTSGSVRLDGADLKQWDR----ETFG 391 (544)
T ss_pred eEEEEEEEEEcCCCCccccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEehhhCCH----HHHh
Confidence 599999999997544579999999999999999999999999999999999999999999999998754321 1246
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhH-HHHHHHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQL-KEYLALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
+.++|+||+|. + ++.|++||+.++.+.. ..... .......+.+.++.+ |++.. .++...+||||||||++|||
T Consensus 392 ~~i~~v~q~~~-l-f~~ti~~Ni~~~~~~~-~~~~~~~~~~~~~~~~~i~~l~~gl~t~-~~~~g~~LSgGq~qrl~lAR 467 (544)
T TIGR01842 392 KHIGYLPQDVE-L-FPGTVAENIARFGENA-DPEKIIEAAKLAGVHELILRLPDGYDTV-IGPGGATLSGGQRQRIALAR 467 (544)
T ss_pred hheEEecCCcc-c-ccccHHHHHhccCCCC-CHHHHHHHHHHhChHHHHHhCccccccc-cCCCcCCCCHHHHHHHHHHH
Confidence 78999999984 4 4579999998642211 11110 111112245666666 66654 57788999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-cCceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLK-KELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
|++.+|++|||||||++||+.+++.+.+.|.++. +++|+|++||+++.+ ..||++++|++|+++..+.
T Consensus 468 all~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~~tvi~ith~~~~~-~~~d~i~~l~~G~i~~~g~ 536 (544)
T TIGR01842 468 ALYGDPKLVVLDEPNSNLDEEGEQALANAIKALKARGITVVVITHRPSLL-GCVDKILVLQDGRIARFGE 536 (544)
T ss_pred HHhcCCCEEEEeCCccccCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHH-HhCCEEEEEECCEEEeeCC
Confidence 9999999999999999999999999999999986 568999999999865 5799999999999987653
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >TIGR00958 3a01208 Conjugate Transporter-2 (CT2) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-49 Score=380.45 Aligned_cols=215 Identities=27% Similarity=0.404 Sum_probs=169.9
Q ss_pred eEEEEeEEEECCCC-ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGT-QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 17 ~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
.|+++||+|+|++. ++++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.+||+++..... ..+
T Consensus 478 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~idg~~i~~~~~----~~l 553 (711)
T TIGR00958 478 LIEFQDVSFSYPNRPDVPVLKGLTFTLHPGEVVALVGPSGSGKSTVAALLQNLYQPTGGQVLLDGVPLVQYDH----HYL 553 (711)
T ss_pred eEEEEEEEEECCCCCCCccccCceEEEcCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCH----HHH
Confidence 59999999999753 3579999999999999999999999999999999999999999999999998865332 234
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHH-HHHHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKE-YLALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALA 172 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~iA 172 (245)
+++|+||+|+|. ++..|++||+.++.+... ...... .....+.+.++.+ |++.. ......+||||||||++||
T Consensus 554 r~~i~~v~Q~~~--lF~gTIreNI~~g~~~~~-~e~i~~al~~a~l~~~i~~lp~GldT~-ige~G~~LSGGQkQRlalA 629 (711)
T TIGR00958 554 HRQVALVGQEPV--LFSGSVRENIAYGLTDTP-DEEIMAAAKAANAHDFIMEFPNGYDTE-VGEKGSQLSGGQKQRIAIA 629 (711)
T ss_pred HhhceEEecCcc--ccccCHHHHHhcCCCCCC-HHHHHHHHHHcCCHHHHHhCCCccCCc-ccCCCCcCCHHHHHHHHHH
Confidence 678999999983 557899999998743211 000000 0011122333333 34432 4556678999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 173 IQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 173 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
||++++|+++|||||||+||+++.+.+.+ ....+++|+|+|||+++.+ ..||+|++|++|+++..++
T Consensus 630 RALl~~p~ILILDEpTSaLD~~te~~i~~--~~~~~~~TvIiItHrl~~i-~~aD~IivL~~G~ive~Gt 696 (711)
T TIGR00958 630 RALVRKPRVLILDEATSALDAECEQLLQE--SRSRASRTVLLIAHRLSTV-ERADQILVLKKGSVVEMGT 696 (711)
T ss_pred HHHhcCCCEEEEEccccccCHHHHHHHHH--hhccCCCeEEEEeccHHHH-HhCCEEEEEECCEEEEeeC
Confidence 99999999999999999999999999988 2223568999999999976 4699999999999987653
|
|
| >TIGR02203 MsbA_lipidA lipid A export permease/ATP-binding protein MsbA | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-48 Score=370.73 Aligned_cols=217 Identities=29% Similarity=0.412 Sum_probs=173.7
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.|+++||+++|++..+++|+|+||+|++||+++|+|+||||||||+++|+|+++|++|+|.++|.++...+. ..++
T Consensus 330 ~i~~~~v~f~y~~~~~~il~~inl~i~~G~~v~IvG~sGsGKSTLl~lL~gl~~~~~G~I~i~g~~i~~~~~----~~~~ 405 (571)
T TIGR02203 330 DVEFRNVTFRYPGRDRPALDSISLVIEPGETVALVGRSGSGKSTLVNLIPRFYEPDSGQILLDGHDLADYTL----ASLR 405 (571)
T ss_pred eEEEEEEEEEcCCCCCccccCeeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCeEEECCEeHHhcCH----HHHH
Confidence 599999999997544579999999999999999999999999999999999999999999999998754332 2346
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHH-HHHHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKE-YLALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
++++|+||+| .+++.|++||+.++.+.......... .....+.+.++.+ |++.. .......||||||||++|||
T Consensus 406 ~~i~~v~Q~~--~lf~~Ti~~Ni~~~~~~~~~~~~i~~~l~~~~l~~~i~~lp~gldt~-i~~~g~~LSgGqrQRiaLAR 482 (571)
T TIGR02203 406 RQVALVSQDV--VLFNDTIANNIAYGRTEQADRAEIERALAAAYAQDFVDKLPLGLDTP-IGENGVLLSGGQRQRLAIAR 482 (571)
T ss_pred hhceEEccCc--ccccccHHHHHhcCCCCCCCHHHHHHHHHHcChHHHHHhCcCcccce-ecCCCCcCCHHHHHHHHHHH
Confidence 7899999998 45688999999987321111000000 0011123333333 34332 34455689999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|++.+|+++|||||||+||+.+.+.+++.|.++.+++|+|+|||+.+.+ ..||+|++|++|+++..+
T Consensus 483 all~~~~illLDEpts~LD~~~~~~i~~~L~~~~~~~tiIiitH~~~~~-~~~D~ii~l~~g~i~~~g 549 (571)
T TIGR02203 483 ALLKDAPILILDEATSALDNESERLVQAALERLMQGRTTLVIAHRLSTI-EKADRIVVMDDGRIVERG 549 (571)
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhCCCEEEEEehhhHHH-HhCCEEEEEeCCEEEeeC
Confidence 9999999999999999999999999999999987789999999999865 679999999999988644
|
This family consists of a single polypeptide chain transporter in the ATP-binding cassette (ABC) transporter family, MsbA, which exports lipid A. It may also act in multidrug resistance. Lipid A, a part of lipopolysaccharide, is found in the outer leaflet of the outer membrane of most Gram-negative bacteria. Members of this family are restricted to the Proteobacteria (although lipid A is more broadly distributed) and often are clustered with lipid A biosynthesis genes. |
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.8e-49 Score=384.13 Aligned_cols=218 Identities=32% Similarity=0.436 Sum_probs=181.0
Q ss_pred eEEEEeEEEECCCC-ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGT-QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 17 ~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
.|+++||+|+|+.+ +.++|+++||.|++|+.++|+|||||||||++++|.+++.|++|+|.+||.|+..... ++.
T Consensus 350 ~ief~nV~FsYPsRpdv~Il~g~sl~i~~G~~valVG~SGsGKST~i~LL~RfydP~~G~V~idG~di~~~~~----~~l 425 (1228)
T KOG0055|consen 350 EIEFRNVCFSYPSRPDVKILKGVSLKIPSGQTVALVGPSGSGKSTLIQLLARFYDPTSGEVLIDGEDIRNLNL----KWL 425 (1228)
T ss_pred ceEEEEEEecCCCCCcchhhCCeEEEeCCCCEEEEECCCCCCHHHHHHHHHHhcCCCCceEEEcCccchhcch----HHH
Confidence 59999999999865 3579999999999999999999999999999999999999999999999999865432 356
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
|.+||+|+|+| .++..|++||+.+|.+......-.+......+.+.+..+ |++.. .....-+||||||||+||||
T Consensus 426 r~~iglV~QeP--vlF~~tI~eNI~~G~~dat~~~i~~a~k~ana~~fi~~lp~g~~T~-vge~g~qLSGGQKQRIAIAR 502 (1228)
T KOG0055|consen 426 RSQIGLVSQEP--VLFATTIRENIRYGKPDATREEIEEAAKAANAHDFILKLPDGYDTL-VGERGVQLSGGQKQRIAIAR 502 (1228)
T ss_pred HhhcCeeeech--hhhcccHHHHHhcCCCcccHHHHHHHHHHccHHHHHHhhHHhhccc-ccCCCCCCChHHHHHHHHHH
Confidence 78999999999 456899999999996443211100111111233333333 44433 46667789999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
||+.+|++||||||||+||+++.+.+.+.|.+..++.|.|+|+|++..+.+ +|++++|++|+|+..+.
T Consensus 503 alv~~P~ILLLDEaTSaLD~~se~~Vq~ALd~~~~grTTivVaHRLStIrn-aD~I~v~~~G~IvE~G~ 570 (1228)
T KOG0055|consen 503 ALVRNPKILLLDEATSALDAESERVVQEALDKASKGRTTIVVAHRLSTIRN-ADKIAVMEEGKIVEQGT 570 (1228)
T ss_pred HHHhCCCEEEecCcccccCHHHHHHHHHHHHHhhcCCeEEEEeeehhhhhc-cCEEEEEECCEEEEecC
Confidence 999999999999999999999999999999999999999999999999976 99999999999988654
|
|
| >COG4608 AppF ABC-type oligopeptide transport system, ATPase component [Amino acid transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-48 Score=330.89 Aligned_cols=183 Identities=35% Similarity=0.484 Sum_probs=164.2
Q ss_pred cceEEEEeEEEECCCCc-------cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQ-------VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEP 87 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~-------~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~ 87 (245)
+++++++|+++.|+.+. ..+++||||+|++||+++|+|+||||||||-|+|+||++|++|+|+|+|+++....
T Consensus 2 ~~ll~v~~l~k~f~~~~~~~~~~~v~avd~Vsf~i~~ge~~glVGESG~GKSTlgr~i~~L~~pt~G~i~f~g~~i~~~~ 81 (268)
T COG4608 2 EPLLEVKNLKKYFPVGKGFGKKRYVKAVDGVSFSIKEGETLGLVGESGCGKSTLGRLILGLEEPTSGEILFEGKDITKLS 81 (268)
T ss_pred CceEEEeccEEEEecccccCcccceEEecceeEEEcCCCEEEEEecCCCCHHHHHHHHHcCcCCCCceEEEcCcchhhcc
Confidence 46799999999996321 47999999999999999999999999999999999999999999999998753210
Q ss_pred CCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHH
Q 035832 88 NNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKR 167 (245)
Q Consensus 88 ~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkq 167 (245)
.....+++.++|+.+|+....++++|++|||||+|
T Consensus 82 ---------------------------------------------~~~~~~~v~elL~~Vgl~~~~~~ryPhelSGGQrQ 116 (268)
T COG4608 82 ---------------------------------------------KEERRERVLELLEKVGLPEEFLYRYPHELSGGQRQ 116 (268)
T ss_pred ---------------------------------------------hhHHHHHHHHHHHHhCCCHHHhhcCCcccCchhhh
Confidence 11234568899999999876689999999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 168 RLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 168 rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
|++|||||+.+|+++++|||+|+||...+.+++++|.++++ +.|.++||||+..+..+|||+++|..|+++..+.
T Consensus 117 Ri~IARALal~P~liV~DEpvSaLDvSiqaqIlnLL~dlq~~~~lt~lFIsHDL~vv~~isdri~VMy~G~iVE~g~ 193 (268)
T COG4608 117 RIGIARALALNPKLIVADEPVSALDVSVQAQILNLLKDLQEELGLTYLFISHDLSVVRYISDRIAVMYLGKIVEIGP 193 (268)
T ss_pred hHHHHHHHhhCCcEEEecCchhhcchhHHHHHHHHHHHHHHHhCCeEEEEEEEHHhhhhhcccEEEEecCceeEecC
Confidence 99999999999999999999999999999999999999974 5899999999999999999999999999998653
|
|
| >cd03217 ABC_FeS_Assembly ABC-type transport system involved in Fe-S cluster assembly, ATPase component | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-48 Score=322.50 Aligned_cols=183 Identities=27% Similarity=0.395 Sum_probs=155.2
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCC--CCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGL--SKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
|+++|++++|++ +++|+|+||++++||+++|+||||||||||+++|+|+ ++|++|+|.++|+++...... ...
T Consensus 1 l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~p~~G~i~~~g~~~~~~~~~---~~~ 75 (200)
T cd03217 1 LEIKDLHVSVGG--KEILKGVNLTIKKGEVHALMGPNGSGKSTLAKTIMGHPKYEVTEGEILFKGEDITDLPPE---ERA 75 (200)
T ss_pred CeEEEEEEEeCC--EEeeeccceEECCCcEEEEECCCCCCHHHHHHHHhCCCcCCCCccEEEECCEECCcCCHH---HHh
Confidence 478999999974 4699999999999999999999999999999999999 579999999999987543211 112
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
+..++|+||++. .++..++.+++ ++.+.+|||||+||++|||||
T Consensus 76 ~~~i~~v~q~~~-~~~~~~~~~~l-----------------------------------~~~~~~LS~G~~qrv~laral 119 (200)
T cd03217 76 RLGIFLAFQYPP-EIPGVKNADFL-----------------------------------RYVNEGFSGGEKKRNEILQLL 119 (200)
T ss_pred hCcEEEeecChh-hccCccHHHHH-----------------------------------hhccccCCHHHHHHHHHHHHH
Confidence 346999999974 44444444433 112358999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHh-hccEEEEEeCCeEEEec
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAA-LVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~-~~d~v~~l~~G~i~~~~ 241 (245)
+.+|+++||||||++||+.+++.++++|+++.+ +.|||++||+++.+.. +||++++|++|+++..+
T Consensus 120 ~~~p~illlDEPt~~LD~~~~~~l~~~L~~~~~~~~tiii~sh~~~~~~~~~~d~i~~l~~G~i~~~~ 187 (200)
T cd03217 120 LLEPDLAILDEPDSGLDIDALRLVAEVINKLREEGKSVLIITHYQRLLDYIKPDRVHVLYDGRIVKSG 187 (200)
T ss_pred hcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhhCCEEEEEECCEEEEEc
Confidence 999999999999999999999999999999865 6899999999999887 79999999999998754
|
Biosynthesis of iron-sulfur clusters (Fe-S) depends on multiprotein systems. The SUF system of E. coli and Erwinia chrysanthemi is important for Fe-S biogenesis under stressful conditions. The SUF system is made of six proteins: SufC is an atypical cytoplasmic ABC-ATPase, which forms a complex with SufB and SufD; SufA plays the role of a scaffold protein for assembly of iron-sulfur clusters and delivery to target proteins; SufS is a cysteine desulfurase which mobilizes the sulfur atom from cysteine and provides it to the cluster; SufE has no associated function yet. |
| >COG4987 CydC ABC-type transport system involved in cytochrome bd biosynthesis, fused ATPase and permease components [Energy production and conversion / Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-49 Score=357.28 Aligned_cols=210 Identities=35% Similarity=0.478 Sum_probs=181.4
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.++++|++|+|++...++|+|+||++++||.+||+|+||||||||+.+|+|.++|++|+|.++|.++...+. +..+
T Consensus 336 ~l~~~~vsF~y~~~~~~~L~~~~l~l~~GEkvAIlG~SGsGKSTllqLl~~~~~~~~G~i~~~g~~~~~l~~----~~~~ 411 (573)
T COG4987 336 ALELRNVSFTYPGQQTKALKNFNLTLAQGEKVAILGRSGSGKSTLLQLLAGAWDPQQGSITLNGVEIASLDE----QALR 411 (573)
T ss_pred eeeeccceeecCCCccchhhccceeecCCCeEEEECCCCCCHHHHHHHHHhccCCCCCeeeECCcChhhCCh----hhHH
Confidence 699999999999876689999999999999999999999999999999999999999999999998865432 2246
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCc----------cCCCCCCCCChHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGT----------SLDKDPHSLSGGYK 166 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqk 166 (245)
+.+++++|.+ .++..|+++|+.++.+... ++.+.++++++||.+. +.+.-...||||||
T Consensus 412 e~i~vl~Qr~--hlF~~Tlr~NL~lA~~~As---------DEel~~aL~qvgL~~l~~~~p~gl~t~lge~G~~LSGGE~ 480 (573)
T COG4987 412 ETISVLTQRV--HLFSGTLRDNLRLANPDAS---------DEELWAALQQVGLEKLLESAPDGLNTWLGEGGRRLSGGER 480 (573)
T ss_pred HHHhhhccch--HHHHHHHHHHHhhcCCCCC---------HHHHHHHHHHcCHHHHHHhChhhhhchhccCCCcCCchHH
Confidence 7899999998 4568899999999744321 2234455566655432 35666789999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 167 RRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 167 qrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
||++|||+|+++.+++||||||.|||+.+.+++++.|.+..+++|+|||||++..++ .||||++|++|+++.+++
T Consensus 481 rRLAlAR~LL~dapl~lLDEPTegLD~~TE~~vL~ll~~~~~~kTll~vTHrL~~le-~~drIivl~~Gkiie~G~ 555 (573)
T COG4987 481 RRLALARALLHDAPLWLLDEPTEGLDPITERQVLALLFEHAEGKTLLMVTHRLRGLE-RMDRIIVLDNGKIIEEGT 555 (573)
T ss_pred HHHHHHHHHHcCCCeEEecCCcccCChhhHHHHHHHHHHHhcCCeEEEEecccccHh-hcCEEEEEECCeeeecCC
Confidence 999999999999999999999999999999999999999888999999999999875 789999999999998764
|
|
| >TIGR01846 type_I_sec_HlyB type I secretion system ABC transporter, HlyB family | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-48 Score=377.24 Aligned_cols=217 Identities=22% Similarity=0.368 Sum_probs=177.8
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.|+++|++|+|+++.+++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..++
T Consensus 455 ~i~~~~vsf~y~~~~~~il~~i~l~i~~G~~vaivG~sGsGKSTL~~ll~g~~~p~~G~I~idg~~i~~~~~----~~~r 530 (694)
T TIGR01846 455 AITFENIRFRYAPDSPEVLSNLNLDIKPGEFIGIVGPSGSGKSTLTKLLQRLYTPQHGQVLVDGVDLAIADP----AWLR 530 (694)
T ss_pred eEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCEehhhCCH----HHHH
Confidence 599999999997544569999999999999999999999999999999999999999999999998865432 2346
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
+.++||+|++. +++.|++||+.++.+...............+.+.++.+ |++.. ......+||||||||++||||
T Consensus 531 ~~i~~v~q~~~--lf~~ti~eNi~~~~~~~~~~~i~~a~~~~~l~~~i~~lp~gl~t~-i~~~g~~LSgGq~qri~lARa 607 (694)
T TIGR01846 531 RQMGVVLQENV--LFSRSIRDNIALCNPGAPFEHVIHAAKLAGAHDFISELPQGYNTE-VGEKGANLSGGQRQRIAIARA 607 (694)
T ss_pred HhCeEEccCCe--ehhhhHHHHHhcCCCCCCHHHHHHHHHHcChHHHHHhCcCccCcE-ecCCCCCCCHHHHHHHHHHHH
Confidence 78999999983 55789999999863321100000001111234445554 56543 566788999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+. .||++++|++|+++..+
T Consensus 608 ll~~~~ililDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~~-~~d~ii~l~~G~i~~~g 673 (694)
T TIGR01846 608 LVGNPRILIFDEATSALDYESEALIMRNMREICRGRTVIIIAHRLSTVR-ACDRIIVLEKGQIAESG 673 (694)
T ss_pred HHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHhCCCEEEEEeCChHHHH-hCCEEEEEeCCEEEEeC
Confidence 9999999999999999999999999999999877799999999999875 59999999999998764
|
Type I protein secretion is a system in some Gram-negative bacteria to export proteins (often proteases) across both inner and outer membranes to the extracellular medium. This is one of three proteins of the type I secretion apparatus. Targeted proteins are not cleaved at the N-terminus, but rather carry signals located toward the extreme C-terminus to direct type I secretion. |
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-48 Score=365.32 Aligned_cols=203 Identities=23% Similarity=0.326 Sum_probs=171.1
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
||+++|++++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.
T Consensus 1 ml~i~~ls~~~~~--~~il~~vsl~i~~Ge~~~liG~NGsGKSTLl~~l~Gl~~p~~G~i~~~~~--------------- 63 (530)
T PRK15064 1 MLSTANITMQFGA--KPLFENISVKFGGGNRYGLIGANGCGKSTFMKILGGDLEPSAGNVSLDPN--------------- 63 (530)
T ss_pred CEEEEEEEEEeCC--cEeEeCCEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC---------------
Confidence 5899999999964 46999999999999999999999999999999999999999999999751
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCC------------C----ch--hH-----------HHHHHHHHHHHHHHc
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQS------------G----SI--QL-----------KEYLALNLQRAINWV 147 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~------------~----~~--~~-----------~~~~~~~~~~~l~~~ 147 (245)
.++||+||++. .+...|+.||+.++..... . .. .. ......++.++++.+
T Consensus 64 ~~i~~~~q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 142 (530)
T PRK15064 64 ERLGKLRQDQF-AFEEFTVLDTVIMGHTELWEVKQERDRIYALPEMSEEDGMKVADLEVKFAEMDGYTAEARAGELLLGV 142 (530)
T ss_pred CEEEEEeccCC-cCCCCcHHHHHHHhhHHHHHHHHHHHHHhcccccccchHHHHHHHHHHHHhcCchhHHHHHHHHHHhC
Confidence 35999999974 6677899999986521000 0 00 00 001234577899999
Q ss_pred CCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhcc
Q 035832 148 GLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVD 227 (245)
Q Consensus 148 ~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d 227 (245)
|+.+...++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|.+ .+.|||+||||++++..+||
T Consensus 143 gl~~~~~~~~~~~LSgGq~qrv~lA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~--~~~tiiivsHd~~~~~~~~d 220 (530)
T PRK15064 143 GIPEEQHYGLMSEVAPGWKLRVLLAQALFSNPDILLLDEPTNNLDINTIRWLEDVLNE--RNSTMIIISHDRHFLNSVCT 220 (530)
T ss_pred CCChhHhcCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHh--CCCeEEEEeCCHHHHHhhcc
Confidence 9975433678999999999999999999999999999999999999999999999974 36899999999999999999
Q ss_pred EEEEEeCCeEEE
Q 035832 228 HSWRMDMGGFLV 239 (245)
Q Consensus 228 ~v~~l~~G~i~~ 239 (245)
++++|++|+++.
T Consensus 221 ~i~~l~~g~i~~ 232 (530)
T PRK15064 221 HMADLDYGELRV 232 (530)
T ss_pred eEEEEeCCEEEE
Confidence 999999999853
|
|
| >TIGR01193 bacteriocin_ABC ABC-type bacteriocin transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-48 Score=378.41 Aligned_cols=215 Identities=27% Similarity=0.383 Sum_probs=173.0
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.|+++||+|+|++ .+++|+|+||+|++||.+||+||||||||||+++|+|+++|++|+|++||.++...+. ..+|
T Consensus 473 ~I~~~~vsf~y~~-~~~iL~~isl~i~~G~~vaIvG~SGsGKSTLlklL~gl~~p~~G~I~idg~~i~~~~~----~~lr 547 (708)
T TIGR01193 473 DIVINDVSYSYGY-GSNILSDISLTIKMNSKTTIVGMSGSGKSTLAKLLVGFFQARSGEILLNGFSLKDIDR----HTLR 547 (708)
T ss_pred cEEEEEEEEEcCC-CCcceeceeEEECCCCEEEEECCCCCCHHHHHHHHhccCCCCCcEEEECCEEHHHcCH----HHHH
Confidence 5999999999974 3579999999999999999999999999999999999999999999999998855332 2346
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHH-HHHHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKE-YLALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
++||||||++. +++.|++||+.++...........+ .....+.+.++.+ |++.. .......||||||||++|||
T Consensus 548 ~~i~~v~Q~~~--lf~gTI~eNi~l~~~~~~~~~~i~~a~~~a~l~~~i~~lp~gldt~-i~e~G~~LSgGQrQRialAR 624 (708)
T TIGR01193 548 QFINYLPQEPY--IFSGSILENLLLGAKENVSQDEIWAACEIAEIKDDIENMPLGYQTE-LSEEGSSISGGQKQRIALAR 624 (708)
T ss_pred HheEEEecCce--ehhHHHHHHHhccCCCCCCHHHHHHHHHHhCCHHHHHhcccccCcE-ecCCCCCCCHHHHHHHHHHH
Confidence 78999999984 4578999999987211111000000 0011123334333 44432 45667889999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||+.+|++||||||||+||+.+.+.+.+.|.++ +++|+|+|||+++.+ ..||+|++|++|+++..+
T Consensus 625 all~~p~iliLDE~Ts~LD~~te~~i~~~L~~~-~~~T~IiitHr~~~~-~~~D~i~~l~~G~i~~~G 690 (708)
T TIGR01193 625 ALLTDSKVLILDESTSNLDTITEKKIVNNLLNL-QDKTIIFVAHRLSVA-KQSDKIIVLDHGKIIEQG 690 (708)
T ss_pred HHhhCCCEEEEeCccccCCHHHHHHHHHHHHHh-cCCEEEEEecchHHH-HcCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999886 568999999999876 579999999999998654
|
This model describes ABC-type bacteriocin transporter. The amino terminal domain (pfam03412) processes the N-terminal leader peptide from the bacteriocin while C-terminal domains resemble ABC transporter membrane protein and ATP-binding cassette domain. In general, bacteriocins are agents which are responsible for killing or inhibiting the closely related species or even different strains of the same species. Bacteriocins are usually encoded by bacterial plasmids. Bacteriocins are named after the species and hence in literature one encounters various names e.g., leucocin from Leuconostic geldium; pedicocin from Pedicoccus acidilactici; sakacin from Lactobacillus sake etc. |
| >TIGR01257 rim_protein retinal-specific rim ABC transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-48 Score=400.93 Aligned_cols=218 Identities=23% Similarity=0.271 Sum_probs=187.1
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
..+|+++||+|+|+++.+.+++|+||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++.... ..
T Consensus 1935 ~~~L~v~nLsK~Y~~~~~~aL~~ISf~I~~GEi~gLLG~NGAGKTTLlkmL~Gll~ptsG~I~i~G~~i~~~~-----~~ 2009 (2272)
T TIGR01257 1935 TDILRLNELTKVYSGTSSPAVDRLCVGVRPGECFGLLGVNGAGKTTTFKMLTGDTTVTSGDATVAGKSILTNI-----SD 2009 (2272)
T ss_pred CceEEEEEEEEEECCCCceEEEeeEEEEcCCcEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECcchH-----HH
Confidence 4479999999999753357999999999999999999999999999999999999999999999999874211 11
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
.+++|||+||++. ++..+|++|++.+..... +. ..+..++.+.++++.++|.+. .++++++|||||||||+||+|
T Consensus 2010 ~r~~IGy~pQ~~~-L~~~LTv~E~L~l~a~l~-g~--~~~~~~~~v~~lLe~lgL~~~-~dk~~~~LSGGqKqRLslA~A 2084 (2272)
T TIGR01257 2010 VHQNMGYCPQFDA-IDDLLTGREHLYLYARLR-GV--PAEEIEKVANWSIQSLGLSLY-ADRLAGTYSGGNKRKLSTAIA 2084 (2272)
T ss_pred HhhhEEEEecccc-CCCCCCHHHHHHHHHHhc-CC--CHHHHHHHHHHHHHHcCCHHH-hcCChhhCCHHHHHHHHHHHH
Confidence 3567999999974 667899999998742111 11 122334567789999999875 799999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-cCceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLK-KELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
|+.+|++|||||||+||||.+++.++++|++++ +++|||++||++++++.+|||+++|++|+++..+.
T Consensus 2085 Li~~P~VLLLDEPTsGLDp~sr~~l~~lL~~l~~~g~TIILtTH~mee~e~lcDrV~IL~~G~i~~~Gs 2153 (2272)
T TIGR01257 2085 LIGCPPLVLLDEPTTGMDPQARRMLWNTIVSIIREGRAVVLTSHSMEECEALCTRLAIMVKGAFQCLGT 2153 (2272)
T ss_pred HhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEECC
Confidence 999999999999999999999999999999985 46899999999999999999999999999987653
|
This model describes the photoreceptor protein (rim protein) in eukaryotes. It is the member of ABC transporter superfamily. Rim protein is a membrane glycoprotein which is localized in the photoreceptor outer segment discs. Mutation/s in its genetic loci is implicated in the recessive Stargardt's disease. |
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-48 Score=364.54 Aligned_cols=205 Identities=27% Similarity=0.318 Sum_probs=173.5
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
..+||+++||+++|++ .+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 3 ~~~~l~i~~l~~~y~~-~~~il~~vs~~i~~Ge~~~iiG~NGsGKSTLlk~i~G~~~p~~G~i~~~~------------- 68 (556)
T PRK11819 3 AQYIYTMNRVSKVVPP-KKQILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFEGEARPAP------------- 68 (556)
T ss_pred ccEEEEEeeEEEEeCC-CCeeeeCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC-------------
Confidence 4568999999999962 25699999999999999999999999999999999999999999999853
Q ss_pred CCCCcEEEEecCCCCCCCcccHHHHHHhcCCCC--------------CCc-hhHH------------------HHHHHHH
Q 035832 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQ--------------SGS-IQLK------------------EYLALNL 140 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~--------------~~~-~~~~------------------~~~~~~~ 140 (245)
..++||+||++. +++.+|+.||+.++.... ... .... .....++
T Consensus 69 --~~~i~~v~Q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (556)
T PRK11819 69 --GIKVGYLPQEPQ-LDPEKTVRENVEEGVAEVKAALDRFNEIYAAYAEPDADFDALAAEQGELQEIIDAADAWDLDSQL 145 (556)
T ss_pred --CCEEEEEecCCC-CCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCccchHHHH
Confidence 136999999984 566789999998752100 000 0000 0113457
Q ss_pred HHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChh
Q 035832 141 QRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLK 220 (245)
Q Consensus 141 ~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~ 220 (245)
.++++.+|+. . .++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|+++. .|||+||||++
T Consensus 146 ~~~l~~~gl~-~-~~~~~~~LSgGqkqrv~la~al~~~p~vlLLDEPt~~LD~~~~~~l~~~L~~~~--~tviiisHd~~ 221 (556)
T PRK11819 146 EIAMDALRCP-P-WDAKVTKLSGGERRRVALCRLLLEKPDMLLLDEPTNHLDAESVAWLEQFLHDYP--GTVVAVTHDRY 221 (556)
T ss_pred HHHHHhCCCC-c-ccCchhhcCHHHHHHHHHHHHHhCCCCEEEEcCCCCcCChHHHHHHHHHHHhCC--CeEEEEeCCHH
Confidence 7889999996 3 589999999999999999999999999999999999999999999999999874 59999999999
Q ss_pred HHHhhccEEEEEeCCeEEE
Q 035832 221 EMAALVDHSWRMDMGGFLV 239 (245)
Q Consensus 221 ~~~~~~d~v~~l~~G~i~~ 239 (245)
++..+||++++|++|+++.
T Consensus 222 ~~~~~~d~i~~l~~g~i~~ 240 (556)
T PRK11819 222 FLDNVAGWILELDRGRGIP 240 (556)
T ss_pred HHHhhcCeEEEEeCCEEEE
Confidence 9999999999999999873
|
|
| >PRK10982 galactose/methyl galaxtoside transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-48 Score=364.07 Aligned_cols=219 Identities=21% Similarity=0.301 Sum_probs=177.1
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
.++|+++|+++.+ +++|+++||+|++||+++|+||||||||||+++|+|+.+|++|+|.++|+++...+. ...
T Consensus 248 ~~~i~~~~l~~~~----~~~l~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~~---~~~ 320 (491)
T PRK10982 248 EVILEVRNLTSLR----QPSIRDVSFDLHKGEILGIAGLVGAKRTDIVETLFGIREKSAGTITLHGKKINNHNA---NEA 320 (491)
T ss_pred CcEEEEeCccccc----CcccceeeEEEeCCcEEEEecCCCCCHHHHHHHHcCCCcCCccEEEECCEECCCCCH---HHH
Confidence 4589999999975 248999999999999999999999999999999999999999999999988743211 111
Q ss_pred CCCcEEEEecCCC--CCCCcccHHHHHHhcC----CCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHH
Q 035832 95 PPEKVGIVFQFPE--RYFVADNVLDEVIFGW----PRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRR 168 (245)
Q Consensus 95 ~~~~i~~v~Q~~~--~~~~~~tv~e~l~~~~----~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqr 168 (245)
.++.++|+||++. ..+...++.+|..+.. ....... ........+.++++.+++.....++++.+||||||||
T Consensus 321 ~~~~i~~~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qr 399 (491)
T PRK10982 321 INHGFALVTEERRSTGIYAYLDIGFNSLISNIRNYKNKVGLL-DNSRMKSDTQWVIDSMRVKTPGHRTQIGSLSGGNQQK 399 (491)
T ss_pred HHCCCEEcCCchhhCCcccCCcHHHheehhhhhhhccccccc-CcHHHHHHHHHHHHhcCccCCCcccccccCCcHHHHH
Confidence 2456999999863 2455677776633221 0000000 1122334577889999995323699999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 169 LALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 169 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|+||||++.+|++|||||||+|||+.+++.++++|.++.+ +.|||++|||++++..+|||+++|++|+++...
T Consensus 400 v~la~al~~~p~illLDEPt~gLD~~~~~~~~~~l~~l~~~~~tvi~vsHd~~~~~~~~d~v~~l~~g~i~~~~ 473 (491)
T PRK10982 400 VIIGRWLLTQPEILMLDEPTRGIDVGAKFEIYQLIAELAKKDKGIIIISSEMPELLGITDRILVMSNGLVAGIV 473 (491)
T ss_pred HHHHHHHhcCCCEEEEcCCCcccChhHHHHHHHHHHHHHHCCCEEEEECCChHHHHhhCCEEEEEECCEEEEEE
Confidence 9999999999999999999999999999999999999864 689999999999999999999999999998654
|
|
| >TIGR02204 MsbA_rel ABC transporter, permease/ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-48 Score=369.04 Aligned_cols=217 Identities=26% Similarity=0.395 Sum_probs=174.3
Q ss_pred eEEEEeEEEECCCCc-cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQ-VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~-~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
.|+++|++++|++.. +++|+|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|.++..... ..+
T Consensus 337 ~i~~~~v~f~y~~~~~~~iL~~inl~i~~Ge~i~IvG~sGsGKSTLlklL~gl~~p~~G~I~i~g~~i~~~~~----~~~ 412 (576)
T TIGR02204 337 EIEFEQVNFAYPARPDQPALDGLNLTVRPGETVALVGPSGAGKSTLFQLLLRFYDPQSGRILLDGVDLRQLDP----AEL 412 (576)
T ss_pred eEEEEEEEEECCCCCCCccccceeEEecCCCEEEEECCCCCCHHHHHHHHHhccCCCCCEEEECCEEHHhcCH----HHH
Confidence 599999999997432 569999999999999999999999999999999999999999999999998754321 123
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHH-HHHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEY-LALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALA 172 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~iA 172 (245)
+++++|+||+| .+++.|++||+.++.+... ....... ....+.+.++.+ |++.. .......||||||||++||
T Consensus 413 ~~~i~~~~Q~~--~lf~~Ti~~Ni~~~~~~~~-~~~~~~~l~~~~l~~~i~~l~~gl~t~-i~~~g~~LSgGq~Qrl~la 488 (576)
T TIGR02204 413 RARMALVPQDP--VLFAASVMENIRYGRPDAT-DEEVEAAARAAHAHEFISALPEGYDTY-LGERGVTLSGGQRQRIAIA 488 (576)
T ss_pred HHhceEEccCC--ccccccHHHHHhcCCCCCC-HHHHHHHHHHcCcHHHHHhCCCCCCce-eCCCCCcCCHHHHHHHHHH
Confidence 56899999998 4568899999998643211 0000000 001123334443 44432 3556678999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 173 IQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 173 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
||++.+|+++|||||||+||+.+.+.+++.|+++.+++|+|++||+++.+ ..||++++|++|+++..+.
T Consensus 489 Ral~~~~~ililDEpts~lD~~~~~~i~~~l~~~~~~~t~IiitH~~~~~-~~~d~vi~l~~g~~~~~g~ 557 (576)
T TIGR02204 489 RAILKDAPILLLDEATSALDAESEQLVQQALETLMKGRTTLIIAHRLATV-LKADRIVVMDQGRIVAQGT 557 (576)
T ss_pred HHHHhCCCeEEEeCcccccCHHHHHHHHHHHHHHhCCCEEEEEecchHHH-HhCCEEEEEECCEEEeeec
Confidence 99999999999999999999999999999999987789999999999876 5799999999999987643
|
This protein is related to a Proteobacterial ATP transporter that exports lipid A and to eukaryotic P-glycoproteins. |
| >TIGR01192 chvA glucan exporter ATP-binding protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-48 Score=367.69 Aligned_cols=215 Identities=25% Similarity=0.361 Sum_probs=174.8
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.|+++|++++|+++ .++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..++
T Consensus 334 ~i~~~~v~~~y~~~-~~~l~~i~~~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~----~~~~ 408 (585)
T TIGR01192 334 AVEFRHITFEFANS-SQGVFDVSFEAKAGQTVAIVGPTGAGKTTLINLLQRVYDPTVGQILIDGIDINTVTR----ESLR 408 (585)
T ss_pred eEEEEEEEEECCCC-CccccceeEEEcCCCEEEEECCCCCCHHHHHHHHccCCCCCCCEEEECCEEhhhCCH----HHHH
Confidence 59999999999753 468999999999999999999999999999999999999999999999998754321 1246
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHH-HHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYL-ALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
+.++|+||++. ++..|++||+.++.+... ........ ...+.+.+..+ |++.. .++....||||||||++|||
T Consensus 409 ~~i~~v~q~~~--lf~~ti~~Ni~~~~~~~~-~~~~~~a~~~~~~~~~i~~l~~g~~t~-~~~~~~~LSgGq~qrl~lAR 484 (585)
T TIGR01192 409 KSIATVFQDAG--LFNRSIRENIRLGREGAT-DEEVYEAAKAAAAHDFILKRSNGYDTL-VGERGNRLSGGERQRLAIAR 484 (585)
T ss_pred hheEEEccCCc--cCcccHHHHHhcCCCCCC-HHHHHHHHHHhCcHHHHHhccccccch-hcCCCCCCCHHHHHHHHHHH
Confidence 78999999984 446899999998633211 11001100 11122333333 55543 56778899999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||+.+|++|||||||++||+.+++.+.+.|.++.+++|+|++||+++.+. .||++++|++|+++..+
T Consensus 485 all~~p~ililDEpts~LD~~~~~~i~~~l~~~~~~~tvI~isH~~~~~~-~~d~i~~l~~G~i~~~g 551 (585)
T TIGR01192 485 AILKNAPILVLDEATSALDVETEARVKNAIDALRKNRTTFIIAHRLSTVR-NADLVLFLDQGRLIEKG 551 (585)
T ss_pred HHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcChHHHH-cCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999877899999999999884 69999999999998654
|
This model describes glucan exporter ATP binding protein in bacteria. It belongs to the larger ABC transporter superfamily with the characteristic ATP binding motif. The In general, this protein is in some ways implicated in osmoregulation and suggested to participate in the export of glucan from the cytoplasm to periplasm. The cyclic beta-1,2-glucan in the bactrerial periplasmic space is suggested to confer the property of high osmolority. It has also been demonstrated that mutants in this loci have lost functions of virulence and motility. It is unclear as to how virulence and osmoadaptaion are related. |
| >cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos) | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.7e-48 Score=311.61 Aligned_cols=161 Identities=31% Similarity=0.492 Sum_probs=145.0
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|++++|++ +++++++||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ....++
T Consensus 1 l~~~~l~~~~~~--~~vl~~i~~~i~~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~---~~~~~~ 75 (163)
T cd03216 1 LELRGITKRFGG--VKALDGVSLSVRRGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASP---RDARRA 75 (163)
T ss_pred CEEEEEEEEECC--eEEEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCH---HHHHhc
Confidence 578999999974 469999999999999999999999999999999999999999999999987753211 011245
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ 177 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~ 177 (245)
.++|+|| ||||||||++||||++.
T Consensus 76 ~i~~~~q--------------------------------------------------------LS~G~~qrl~laral~~ 99 (163)
T cd03216 76 GIAMVYQ--------------------------------------------------------LSVGERQMVEIARALAR 99 (163)
T ss_pred CeEEEEe--------------------------------------------------------cCHHHHHHHHHHHHHhc
Confidence 6888887 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEE
Q 035832 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLV 239 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~ 239 (245)
+|+++||||||++||+.+++.+.++|+++++ +.|+|++|||++++..+||++++|++|+++.
T Consensus 100 ~p~illlDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~~~~~~d~~~~l~~g~i~~ 162 (163)
T cd03216 100 NARLLILDEPTAALTPAEVERLFKVIRRLRAQGVAVIFISHRLDEVFEIADRVTVLRDGRVVG 162 (163)
T ss_pred CCCEEEEECCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEe
Confidence 9999999999999999999999999999864 6899999999999999999999999999864
|
The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter. |
| >COG4148 ModC ABC-type molybdate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-49 Score=332.81 Aligned_cols=196 Identities=32% Similarity=0.568 Sum_probs=172.5
Q ss_pred eeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccH
Q 035832 36 NGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNV 115 (245)
Q Consensus 36 ~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv 115 (245)
=+++|+.+.-.++||.|+||||||||+|+|+|+.+|++|.|.++|.-+.+..........+++||||||+. .+|+++||
T Consensus 15 l~a~~~~p~~GvTAlFG~SGsGKTslin~IaGL~rPdeG~I~lngr~L~Ds~k~i~lp~~~RriGYVFQDA-RLFpH~tV 93 (352)
T COG4148 15 LDANFTLPARGITALFGPSGSGKTSLINMIAGLTRPDEGRIELNGRVLVDAEKGIFLPPEKRRIGYVFQDA-RLFPHYTV 93 (352)
T ss_pred EEEeccCCCCceEEEecCCCCChhhHHHHHhccCCccccEEEECCEEeecccCCcccChhhheeeeEeecc-ccccceEE
Confidence 47889987768999999999999999999999999999999999998765444333333467899999997 58999999
Q ss_pred HHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 035832 116 LDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKA 195 (245)
Q Consensus 116 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~ 195 (245)
+.|+.||.... .....+++.+.+|++++ ++++|.+|||||||||+|+|||+..|++||||||.++||...
T Consensus 94 rgNL~YG~~~~---------~~~~fd~iv~lLGI~hL-L~R~P~~LSGGEkQRVAIGRALLt~P~LLLmDEPLaSLD~~R 163 (352)
T COG4148 94 RGNLRYGMWKS---------MRAQFDQLVALLGIEHL-LDRYPGTLSGGEKQRVAIGRALLTAPELLLMDEPLASLDLPR 163 (352)
T ss_pred ecchhhhhccc---------chHhHHHHHHHhCcHHH-HhhCCCccCcchhhHHHHHHHHhcCCCeeeecCchhhcccch
Confidence 99999984321 12245677888999986 799999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhcC--ceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 196 RADVVKLLKHLKKE--LTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 196 ~~~i~~~l~~l~~~--~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
+++++-+|+++.++ ..|++|||.++++.++||+|++|++|++.+.+.
T Consensus 164 K~EilpylERL~~e~~IPIlYVSHS~~Ev~RLAd~vV~le~GkV~A~g~ 212 (352)
T COG4148 164 KREILPYLERLRDEINIPILYVSHSLDEVLRLADRVVVLENGKVKASGP 212 (352)
T ss_pred hhHHHHHHHHHHHhcCCCEEEEecCHHHHHhhhheEEEecCCeEEecCc
Confidence 99999999999754 799999999999999999999999999988664
|
|
| >PRK10938 putative molybdenum transport ATP-binding protein ModF; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-48 Score=362.26 Aligned_cols=224 Identities=24% Similarity=0.267 Sum_probs=176.7
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-CcceEEEcCccCCCCCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP-TSGSINIRGYNNDGEPNNSPE 92 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~ 92 (245)
..++|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+.+| ++|+|+++|+++..... .
T Consensus 257 ~~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~i~G~NGsGKSTLl~~l~G~~~~~~~G~i~~~g~~~~~~~~---~ 331 (490)
T PRK10938 257 NEPRIVLNNGVVSYND--RPILHNLSWQVNPGEHWQIVGPNGAGKSTLLSLITGDHPQGYSNDLTLFGRRRGSGET---I 331 (490)
T ss_pred CCceEEEeceEEEECC--eeEEeeceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCcccCCeEEEecccCCCCCC---H
Confidence 3568999999999964 4689999999999999999999999999999999999876 69999999986532110 0
Q ss_pred CCCCCcEEEEecCCCCCCC-cccHHHHHHhcCCCCCCc-hhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHH
Q 035832 93 PLPPEKVGIVFQFPERYFV-ADNVLDEVIFGWPRQSGS-IQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLA 170 (245)
Q Consensus 93 ~~~~~~i~~v~Q~~~~~~~-~~tv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ 170 (245)
...++++||++|++...+. ..++.+++.+++...... ........+.+.++++.+++.+...++++.+|||||||||+
T Consensus 332 ~~~~~~i~~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~ 411 (490)
T PRK10938 332 WDIKKHIGYVSSSLHLDYRVSTSVRNVILSGFFDSIGIYQAVSDRQQKLAQQWLDILGIDKRTADAPFHSLSWGQQRLAL 411 (490)
T ss_pred HHHHhhceEECHHHHhhcccCCcHHHHHHhccccccccccCCCHHHHHHHHHHHHHcCCchhhccCchhhCCHHHHHHHH
Confidence 1124679999998742222 246666655432110000 00011223457889999999861369999999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-C-ceEEEEecChhHHHh-hccEEEEEeCCeEEEecc
Q 035832 171 LAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-E-LTILVVSHDLKEMAA-LVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 171 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~-~tiii~tHd~~~~~~-~~d~v~~l~~G~i~~~~~ 242 (245)
|||||+.+|++|||||||+|||+.+++.++++|+++++ + .|||++|||++++.. +||++++|++|+++....
T Consensus 412 la~al~~~p~lllLDEPt~gLD~~~~~~l~~~L~~l~~~~~~tviivsHd~~~~~~~~~d~v~~l~~G~i~~~~~ 486 (490)
T PRK10938 412 IVRALVKHPTLLILDEPLQGLDPLNRQLVRRFVDVLISEGETQLLFVSHHAEDAPACITHRLEFVPDGDIYRYVQ 486 (490)
T ss_pred HHHHHhcCCCEEEEcCccccCCHHHHHHHHHHHHHHHhcCCcEEEEEecchhhhhhhhheeEEEecCCceEEeec
Confidence 99999999999999999999999999999999999864 4 579999999999987 599999999999886543
|
|
| >PRK10789 putative multidrug transporter membrane\ATP-binding components; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-48 Score=367.26 Aligned_cols=213 Identities=23% Similarity=0.346 Sum_probs=173.6
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.|+++|++++|+....++|+|+||++++|++++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..++
T Consensus 313 ~I~~~~v~~~y~~~~~~~l~~i~~~i~~G~~~~ivG~sGsGKSTLl~ll~g~~~p~~G~i~~~g~~~~~~~~----~~~~ 388 (569)
T PRK10789 313 ELDVNIRQFTYPQTDHPALENVNFTLKPGQMLGICGPTGSGKSTLLSLIQRHFDVSEGDIRFHDIPLTKLQL----DSWR 388 (569)
T ss_pred cEEEEEEEEECCCCCCccccCeeEEECCCCEEEEECCCCCCHHHHHHHHhcccCCCCCEEEECCEEHhhCCH----HHHH
Confidence 599999999997544579999999999999999999999999999999999999999999999998754321 2346
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHH-----HHHHHHHHc--CCCCccCCCCCCCCChHHHHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLAL-----NLQRAINWV--GLDGTSLDKDPHSLSGGYKRRL 169 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~-----~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv 169 (245)
+.++|++|+|. + +..|++||+.++.+.. . ..+... .+.+.+..+ |++.. .+.....||||||||+
T Consensus 389 ~~i~~v~q~~~-l-f~~ti~~Ni~~~~~~~--~---~~~~~~~~~~~~l~~~i~~lp~gl~t~-~~~~g~~LSgGq~qRi 460 (569)
T PRK10789 389 SRLAVVSQTPF-L-FSDTVANNIALGRPDA--T---QQEIEHVARLASVHDDILRLPQGYDTE-VGERGVMLSGGQKQRI 460 (569)
T ss_pred hheEEEccCCe-e-ccccHHHHHhcCCCCC--C---HHHHHHHHHHcCCHHHHHhCcCcccce-ecCCCCcCCHHHHHHH
Confidence 78999999984 4 4679999999863221 1 111111 111222222 34432 4566788999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 170 ALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 170 ~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
+|||||+.+|+++||||||++||+.+.+.+.+.|+++.+++|+|++||+++.+ ..||++++|++|+++..+.
T Consensus 461 ~lARall~~~~illlDEpts~LD~~~~~~i~~~l~~~~~~~tii~itH~~~~~-~~~d~i~~l~~G~i~~~g~ 532 (569)
T PRK10789 461 SIARALLLNAEILILDDALSAVDGRTEHQILHNLRQWGEGRTVIISAHRLSAL-TEASEILVMQHGHIAQRGN 532 (569)
T ss_pred HHHHHHhcCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEecchhHH-HcCCEEEEEeCCEEEEecC
Confidence 99999999999999999999999999999999999987789999999999876 4699999999999987653
|
|
| >cd03223 ABCD_peroxisomal_ALDP Peroxisomal ATP-binding cassette transporter (Pat) is involved in the import of very long-chain fatty acids (VLCFA) into the peroxisome | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-47 Score=310.20 Aligned_cols=164 Identities=30% Similarity=0.427 Sum_probs=146.7
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|++++|+++ +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|. +
T Consensus 1 i~~~~~~~~~~~~-~~~l~~i~l~i~~Ge~~~i~G~nGsGKSTLl~~l~G~~~~~~G~i~~~~~---------------~ 64 (166)
T cd03223 1 IELENLSLATPDG-RVLLKDLSFEIKPGDRLLITGPSGTGKSSLFRALAGLWPWGSGRIGMPEG---------------E 64 (166)
T ss_pred CEEEEEEEEcCCC-CeeeecCeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECCC---------------c
Confidence 4789999999643 46999999999999999999999999999999999999999999999641 4
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ 177 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~ 177 (245)
+++|++|++. ++..|+.||+.++ .+.+||||||||++|||||+.
T Consensus 65 ~i~~~~q~~~--~~~~tv~~nl~~~----------------------------------~~~~LS~G~~~rv~laral~~ 108 (166)
T cd03223 65 DLLFLPQRPY--LPLGTLREQLIYP----------------------------------WDDVLSGGEQQRLAFARLLLH 108 (166)
T ss_pred eEEEECCCCc--cccccHHHHhhcc----------------------------------CCCCCCHHHHHHHHHHHHHHc
Confidence 6999999974 3467999998642 356899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCe
Q 035832 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGG 236 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~ 236 (245)
+|+++||||||++||+.+++.+.++|+++ +.|+|++|||++.. .+||++++|+++.
T Consensus 109 ~p~~lllDEPt~~LD~~~~~~l~~~l~~~--~~tiiivsh~~~~~-~~~d~i~~l~~~~ 164 (166)
T cd03223 109 KPKFVFLDEATSALDEESEDRLYQLLKEL--GITVISVGHRPSLW-KFHDRVLDLDGEG 164 (166)
T ss_pred CCCEEEEECCccccCHHHHHHHHHHHHHh--CCEEEEEeCChhHH-hhCCEEEEEcCCC
Confidence 99999999999999999999999999987 48999999999865 6999999999764
|
The peroxisomal membrane forms a permeability barrier for a wide variety of metabolites required for and formed during fatty acid beta-oxidation. To communicate with the cytoplasm and mitochondria, peroxisomes need dedicated proteins to transport such hydrophilic molecules across their membranes. X-linked adrenoleukodystrophy (X-ALD) is caused by mutations in the ALD gene, which encodes ALDP (adrenoleukodystrophy protein ), a peroxisomal integral membrane protein that is a member of the ATP-binding cassette (ABC) transporter protein family. The disease is characterized by a striking and unpredictable variation in phenotypic expression. Phenotypes include the rapidly progressive childhood cerebral form (CCALD), the milder adult form, adrenomyeloneuropathy (AMN), and variants without neurologic involvement (i.e. asympt |
| >COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.3e-50 Score=315.05 Aligned_cols=210 Identities=28% Similarity=0.404 Sum_probs=181.0
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.++++++.+.-+ +.++|+++||++++||+++|+||||||||||+|+++-|++|++|+++|.|+++..... ..+|
T Consensus 3 lle~kq~~y~a~--~a~il~~isl~v~~Ge~iaitGPSG~GKStllk~va~Lisp~~G~l~f~Ge~vs~~~p----ea~R 76 (223)
T COG4619 3 LLELKQVGYLAG--DAKILNNISLSVRAGEFIAITGPSGCGKSTLLKIVASLISPTSGTLLFEGEDVSTLKP----EAYR 76 (223)
T ss_pred chHHHHHHhhcC--CCeeecceeeeecCCceEEEeCCCCccHHHHHHHHHhccCCCCceEEEcCccccccCh----HHHH
Confidence 456677655443 4679999999999999999999999999999999999999999999999999865432 3457
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
.+|+|+.|.|. + +..||++|+.|++..... +.....+.++++++++.+..+++.+.+||||||||++|+|-|.
T Consensus 77 q~VsY~~Q~pa-L-fg~tVeDNlifP~~~r~r-----r~dr~aa~~llar~~l~~~~L~k~it~lSGGE~QriAliR~Lq 149 (223)
T COG4619 77 QQVSYCAQTPA-L-FGDTVEDNLIFPWQIRNR-----RPDRAAALDLLARFALPDSILTKNITELSGGEKQRIALIRNLQ 149 (223)
T ss_pred HHHHHHHcCcc-c-cccchhhccccchHHhcc-----CCChHHHHHHHHHcCCchhhhcchhhhccchHHHHHHHHHHhh
Confidence 89999999995 4 578999999997432211 1123456788999999988889999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-c-CceEEEEecChhHHHhhccEEEEEeCCeEEE
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLK-K-ELTILVVSHDLKEMAALVDHSWRMDMGGFLV 239 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~ 239 (245)
.-|++||||||||+||+.+++.+.++|.++- + +.+++.||||.+++.+++|+++-+..|++=.
T Consensus 150 ~~P~ILLLDE~TsALD~~nkr~ie~mi~~~v~~q~vAv~WiTHd~dqa~rha~k~itl~~G~~~~ 214 (223)
T COG4619 150 FMPKILLLDEITSALDESNKRNIEEMIHRYVREQNVAVLWITHDKDQAIRHADKVITLQPGHAGE 214 (223)
T ss_pred cCCceEEecCchhhcChhhHHHHHHHHHHHhhhhceEEEEEecChHHHhhhhheEEEeccCcccc
Confidence 9999999999999999999999999999985 3 5899999999999999999999999987643
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-47 Score=338.31 Aligned_cols=226 Identities=30% Similarity=0.399 Sum_probs=193.9
Q ss_pred CcceEEEEeEEEECCCC---------ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCC
Q 035832 14 DYSCLEVRDVSYRPPGT---------QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNND 84 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~---------~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~ 84 (245)
..+.++.+++.+.|+-. ...+++++||++++||.++|+|+||||||||-++|.+|++++ |+|+|+|+++.
T Consensus 273 ~~~ll~~~~v~v~f~i~~g~~~r~~~~~~AVd~isl~L~~gqTlGlVGESGSGKsTlG~allrL~~s~-G~I~F~G~~i~ 351 (534)
T COG4172 273 APVLLEVEDLRVWFPIKGGFLRRTVDHLRAVDGISLTLRRGQTLGLVGESGSGKSTLGLALLRLIPSQ-GEIRFDGQDID 351 (534)
T ss_pred CCceEEecceEEEEecCCccccccchheEEeccceeEecCCCeEEEEecCCCCcchHHHHHHhhcCcC-ceEEECCcccc
Confidence 35579999999888521 245899999999999999999999999999999999999876 99999999998
Q ss_pred CCCCCCCCCCCCCcEEEEecCCCCCC-CcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCCh
Q 035832 85 GEPNNSPEPLPPEKVGIVFQFPERYF-VADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSG 163 (245)
Q Consensus 85 ~~~~~~~~~~~~~~i~~v~Q~~~~~~-~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg 163 (245)
..+...... .|+++-+|||||...+ +.+||.+-+.-|+.-.. ......+..+++.++|+.+||+....++||+++||
T Consensus 352 ~~~~~~mrp-lR~~mQvVFQDPygSLsPRmtV~qII~EGL~vh~-~~ls~~eR~~rv~~aL~EVGLDp~~r~RYPhEFSG 429 (534)
T COG4172 352 GLSRKEMRP-LRRRMQVVFQDPYGSLSPRMTVGQIIEEGLRVHE-PKLSAAERDQRVIEALEEVGLDPATRNRYPHEFSG 429 (534)
T ss_pred ccChhhhhh-hhhhceEEEeCCCCCCCcccCHHHHhhhhhhhcC-CCCCHHHHHHHHHHHHHHcCCChhHhhcCCcccCc
Confidence 765544333 3678999999996433 56899988887743211 11224455678899999999998768999999999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 164 GYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 164 Gqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|||||++||||++.+|++++||||||+||...+.+++++|+++++ +.+-+|||||+..+..+||+|++|++|+|+.++
T Consensus 430 GQRQRIAIARAliLkP~~i~LDEPTSALD~SVQaQvv~LLr~LQ~k~~LsYLFISHDL~VvrAl~~~viVm~~GkiVE~G 509 (534)
T COG4172 430 GQRQRIAIARALILKPELILLDEPTSALDRSVQAQVLDLLRDLQQKHGLSYLFISHDLAVVRALCHRVIVMRDGKIVEQG 509 (534)
T ss_pred chhhHHHHHHHHhcCCcEEEecCCchHhhHHHHHHHHHHHHHHHHHhCCeEEEEeccHHHHHHhhceEEEEeCCEEeeeC
Confidence 999999999999999999999999999999999999999999964 589999999999999999999999999999876
Q ss_pred c
Q 035832 242 R 242 (245)
Q Consensus 242 ~ 242 (245)
.
T Consensus 510 ~ 510 (534)
T COG4172 510 P 510 (534)
T ss_pred C
Confidence 5
|
|
| >PRK15064 ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-47 Score=360.56 Aligned_cols=198 Identities=22% Similarity=0.287 Sum_probs=170.9
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
.++|+++|++++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|.
T Consensus 317 ~~~l~~~~l~~~~~~--~~~l~~is~~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~~------------- 381 (530)
T PRK15064 317 RNALEVENLTKGFDN--GPLFKNLNLLLEAGERLAIIGENGVGKTTLLRTLVGELEPDSGTVKWSEN------------- 381 (530)
T ss_pred CceEEEEeeEEeeCC--ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCc-------------
Confidence 358999999999964 46999999999999999999999999999999999999999999998641
Q ss_pred CCCcEEEEecCCCC-CCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPER-YFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
.++||+||++.. ++...|+.+|+.+... .. .....+.++++.+++.....++++.+|||||||||+|||
T Consensus 382 --~~i~~~~q~~~~~~~~~~t~~~~~~~~~~---~~-----~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~qrv~la~ 451 (530)
T PRK15064 382 --ANIGYYAQDHAYDFENDLTLFDWMSQWRQ---EG-----DDEQAVRGTLGRLLFSQDDIKKSVKVLSGGEKGRMLFGK 451 (530)
T ss_pred --eEEEEEcccccccCCCCCcHHHHHHHhcc---CC-----ccHHHHHHHHHHcCCChhHhcCcccccCHHHHHHHHHHH
Confidence 469999999742 3345799999864210 00 112356788999999522369999999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEE
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLV 239 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~ 239 (245)
||+.+|++|||||||++||+.+++.+++.|+++ +.|||++|||++++..+||++++|++|+++.
T Consensus 452 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vsHd~~~~~~~~d~i~~l~~g~i~~ 515 (530)
T PRK15064 452 LMMQKPNVLVMDEPTNHMDMESIESLNMALEKY--EGTLIFVSHDREFVSSLATRIIEITPDGVVD 515 (530)
T ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHC--CCEEEEEeCCHHHHHHhCCEEEEEECCeEEE
Confidence 999999999999999999999999999999987 3599999999999999999999999999973
|
|
| >TIGR02857 CydD thiol reductant ABC exporter, CydD subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.2e-48 Score=362.60 Aligned_cols=207 Identities=31% Similarity=0.440 Sum_probs=166.5
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.|+++|++|+|+++.+++|+|+||+|++||.++|+||||||||||+|+|+|+++|++|+|.++|.++...+. ..++
T Consensus 320 ~i~~~~v~f~y~~~~~~il~~i~l~i~~G~~~~ivG~sGsGKSTL~~ll~g~~~~~~G~I~~~g~~i~~~~~----~~lr 395 (529)
T TIGR02857 320 SLEFSGLSVAYPGRRAPALRPVSFTVPPGERVALVGPSGAGKSTLLNLLLGFVDPTEGSIAVNGVPLADADA----DSWR 395 (529)
T ss_pred eEEEEEEEEECCCCCcccccceeEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEehhhCCH----HHHH
Confidence 599999999997644579999999999999999999999999999999999999999999999998865432 2346
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHH-HHHHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKE-YLALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
++++||+|+|. +++.|++||+.++.+... ...... .....+.+.++.+ |++.. ......+||||||||++|||
T Consensus 396 ~~i~~v~Q~~~--lf~~ti~~Ni~~~~~~~~-~~~i~~a~~~~~l~~~i~~lp~Gldt~-v~e~g~~LSgGq~qri~laR 471 (529)
T TIGR02857 396 DQIAWVPQHPF--LFAGTIAENIRLARPDAS-DAEIRRALERAGLDEFVAALPQGLDTL-IGEGGAGLSGGQAQRLALAR 471 (529)
T ss_pred hheEEEcCCCc--ccCcCHHHHHhccCCCCC-HHHHHHHHHHcCcHHHHHhCcccccch-hccccccCCHHHHHHHHHHH
Confidence 78999999984 456899999998633211 000000 0011122333333 33332 45567789999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEE
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRM 232 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l 232 (245)
||+.+|+++|||||||+||+.+.+.+.+.|.++.+++|+|++||+++.+ +.||++++|
T Consensus 472 al~~~~~ililDE~ts~lD~~~~~~i~~~l~~~~~~~t~i~itH~~~~~-~~~d~i~~l 529 (529)
T TIGR02857 472 AFLRDAPLLLLDEPTAHLDAETEALVTEALRALAQGRTVLLVTHRLALA-ERADRIVVL 529 (529)
T ss_pred HHhcCCCEEEEeCcccccCHHHHHHHHHHHHHhcCCCEEEEEecCHHHH-HhCCEEEeC
Confidence 9999999999999999999999999999999987789999999999887 579999875
|
Unfortunately, the gene symbol nomenclature adopted based on this operon in B. subtilis assigns cydC to the third gene in the operon where this gene is actually homologous to the E. coli cydD gene. We have chosen to name all homologs in this family in accordance with the precedence of publication of the E. coli name, CydD |
| >PRK13546 teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8e-47 Score=326.96 Aligned_cols=203 Identities=20% Similarity=0.271 Sum_probs=169.3
Q ss_pred eEEEEeEEEECCC------------------CccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEE
Q 035832 17 CLEVRDVSYRPPG------------------TQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINI 78 (245)
Q Consensus 17 ~l~~~~l~~~y~~------------------~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~ 78 (245)
.++++||++.|.. ..+++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.+
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~il~~is~~i~~Ge~~~liG~NGsGKSTLlk~L~Gl~~p~~G~I~~ 83 (264)
T PRK13546 4 SVNIKNVTKEYRIYRTNKERMKDALIPKHKNKTFFALDDISLKAYEGDVIGLVGINGSGKSTLSNIIGGSLSPTVGKVDR 83 (264)
T ss_pred eEEEeeeEEEEEecccchHHHHHHhhhhccCCceEEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCcCCCceEEEE
Confidence 4788888876632 2346999999999999999999999999999999999999999999999
Q ss_pred cCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCC
Q 035832 79 RGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDP 158 (245)
Q Consensus 79 ~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~ 158 (245)
+|. +++++|.+. .....|+.+|+.++.... .. . .......+.++++.+++.+. .++++
T Consensus 84 ~g~-----------------~~~~~~~~~-~~~~~tv~enl~~~~~~~-~~-~-~~~~~~~~~~~l~~~~l~~~-~~~~~ 141 (264)
T PRK13546 84 NGE-----------------VSVIAISAG-LSGQLTGIENIEFKMLCM-GF-K-RKEIKAMTPKIIEFSELGEF-IYQPV 141 (264)
T ss_pred CCE-----------------EeEEecccC-CCCCCcHHHHHHHHHHHc-CC-C-HHHHHHHHHHHHHHcCCchh-hcCCc
Confidence 763 345666653 445679999997642111 11 1 12233446678888899875 79999
Q ss_pred CCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeE
Q 035832 159 HSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGF 237 (245)
Q Consensus 159 ~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i 237 (245)
.+|||||+||++||||++.+|++|||||||+|||+.+++.+++.|.++.+ +.|||++||+++++..+||++++|++|++
T Consensus 142 ~~LS~Gq~qrv~Laral~~~p~iLlLDEPt~gLD~~~~~~l~~~L~~~~~~g~tiIiisH~~~~i~~~~d~i~~l~~G~i 221 (264)
T PRK13546 142 KKYSSGMRAKLGFSINITVNPDILVIDEALSVGDQTFAQKCLDKIYEFKEQNKTIFFVSHNLGQVRQFCTKIAWIEGGKL 221 (264)
T ss_pred ccCCHHHHHHHHHHHHHhhCCCEEEEeCccccCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHHHHHcCEEEEEECCEE
Confidence 99999999999999999999999999999999999999999999999864 68999999999999999999999999999
Q ss_pred EEec
Q 035832 238 LVEQ 241 (245)
Q Consensus 238 ~~~~ 241 (245)
+..+
T Consensus 222 ~~~g 225 (264)
T PRK13546 222 KDYG 225 (264)
T ss_pred EEeC
Confidence 8654
|
|
| >TIGR03771 anch_rpt_ABC anchored repeat-type ABC transporter, ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-47 Score=321.91 Aligned_cols=191 Identities=28% Similarity=0.391 Sum_probs=159.5
Q ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCC-CcccHHHH
Q 035832 40 FSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYF-VADNVLDE 118 (245)
Q Consensus 40 l~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~-~~~tv~e~ 118 (245)
|+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++.. .+++++|+||++...+ +..|+.+|
T Consensus 1 l~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~~~~---------~~~~i~~v~q~~~~~~~~~~tv~~~ 71 (223)
T TIGR03771 1 LSADKGELLGLLGPNGAGKTTLLRAILGLIPPAKGTVKVAGASPGK---------GWRHIGYVPQRHEFAWDFPISVAHT 71 (223)
T ss_pred CccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCccchH---------hhCcEEEecccccccCCCCccHHHH
Confidence 5789999999999999999999999999999999999999976521 2457999999985322 34799999
Q ss_pred HHhcCCCCCCch-hHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 035832 119 VIFGWPRQSGSI-QLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARA 197 (245)
Q Consensus 119 l~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~ 197 (245)
+.++........ .........+.++++.+++.+. .++++.+||||||||++|||||+.+|+++||||||++||+.+++
T Consensus 72 l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~qrv~laral~~~p~llilDEP~~~LD~~~~~ 150 (223)
T TIGR03771 72 VMSGRTGHIGWLRRPCVADFAAVRDALRRVGLTEL-ADRPVGELSGGQRQRVLVARALATRPSVLLLDEPFTGLDMPTQE 150 (223)
T ss_pred HHhccccccccccCCcHHHHHHHHHHHHHhCCchh-hcCChhhCCHHHHHHHHHHHHHhcCCCEEEEeCCcccCCHHHHH
Confidence 987532110000 0111223457889999999875 68999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 198 DVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 198 ~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
.+.++|+++++ +.|+|++|||++++..+||+++++ +|+++..+
T Consensus 151 ~l~~~l~~~~~~~~tvii~sH~~~~~~~~~d~i~~l-~G~i~~~~ 194 (223)
T TIGR03771 151 LLTELFIELAGAGTAILMTTHDLAQAMATCDRVVLL-NGRVIADG 194 (223)
T ss_pred HHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEE-CCEEEeec
Confidence 99999999864 689999999999999999999999 79998654
|
This protein family is the ATP-binding cassette subunit of binding protein-dependent ABC transporter complex that strictly co-occurs with TIGR03769. TIGRFAMs model TIGR03769 describes a protein domain that occurs singly or as one of up to three repeats in proteins of a number of Actinobacteria, including Propionibacterium acnes KPA171202. The TIGR03769 domain occurs both in an adjacent gene for the substrate-binding protein and in additional (often nearby) proteins, often with LPXTG-like sortase recognition signals. Homologous ATP-binding subunits outside the scope of this family include manganese transporter MntA in Synechocystis sp. PCC 6803 and chelated iron transporter subunits. The function of this transporter complex is unknown. |
| >PRK13545 tagH teichoic acids export protein ATP-binding subunit; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-46 Score=347.86 Aligned_cols=206 Identities=24% Similarity=0.352 Sum_probs=172.0
Q ss_pred CcceEEEEeEEEECCCC-ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGT-QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPE 92 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 92 (245)
..+|++++||++.|+++ .+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.++|.+.
T Consensus 18 ~~~mL~lknL~~~~~~~~~~~IL~nVSfsI~~GEivgIiGpNGSGKSTLLkiLaGLl~P~sGeI~I~G~~~--------- 88 (549)
T PRK13545 18 NKPFDKLKDLFFRSKDGEYHYALNNISFEVPEGEIVGIIGLNGSGKSTLSNLIAGVTMPNKGTVDIKGSAA--------- 88 (549)
T ss_pred ccceeEEEEEEEecCCCccceEEeeeEEEEeCCCEEEEEcCCCCCHHHHHHHHhCCCCCCceEEEECCEee---------
Confidence 35589999999999753 24699999999999999999999999999999999999999999999987531
Q ss_pred CCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHH
Q 035832 93 PLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALA 172 (245)
Q Consensus 93 ~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iA 172 (245)
.+++ .+ .+++.+|+.||+.+..... .. ......+.+.++++.+++.+. .++++.+||||||||++||
T Consensus 89 -----~i~~---~~-~l~~~lTV~EnL~l~~~~~-~~--~~~e~~e~i~elLe~lgL~~~-ld~~~~~LSGGQrQRVaLA 155 (549)
T PRK13545 89 -----LIAI---SS-GLNGQLTGIENIELKGLMM-GL--TKEKIKEIIPEIIEFADIGKF-IYQPVKTYSSGMKSRLGFA 155 (549)
T ss_pred -----eEEe---cc-ccCCCCcHHHHHHhhhhhc-CC--CHHHHHHHHHHHHHHcCChhH-hhCCcccCCHHHHHHHHHH
Confidence 1222 22 1344579999998742111 11 112233456788999999875 6999999999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 173 IQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 173 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|||+.+|++|||||||+|||+.+++.+++.|+++++ +.|||++|||++++..+||++++|++|+++..+
T Consensus 156 rAL~~~P~LLLLDEPTsgLD~~sr~~LlelL~el~~~G~TIIIVSHdl~~i~~l~DrIivL~~GkIv~~G 225 (549)
T PRK13545 156 ISVHINPDILVIDEALSVGDQTFTKKCLDKMNEFKEQGKTIFFISHSLSQVKSFCTKALWLHYGQVKEYG 225 (549)
T ss_pred HHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999864 689999999999999999999999999998654
|
|
| >COG4172 ABC-type uncharacterized transport system, duplicated ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-47 Score=337.57 Aligned_cols=228 Identities=28% Similarity=0.417 Sum_probs=190.3
Q ss_pred CCcceEEEEeEEEECC--CCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-----CcceEEEcCccCCC
Q 035832 13 CDYSCLEVRDVSYRPP--GTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP-----TSGSINIRGYNNDG 85 (245)
Q Consensus 13 ~~~~~l~~~~l~~~y~--~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-----~~G~i~~~g~~~~~ 85 (245)
++++.|+++|+++.|. ++...++++|||+|++||.+||+|+||||||-..+.++||++. -+|+|.|+|+++..
T Consensus 2 ~~~~lL~v~nLsV~f~~~~~~~~aVk~isf~i~~GEtlAlVGESGSGKSvTa~sim~LLp~~~~~~~sg~i~f~G~dll~ 81 (534)
T COG4172 2 MTMPLLSIRNLSVAFHQEGGTVEAVKGISFDIEAGETLALVGESGSGKSVTALSILGLLPSPAAAHPSGSILFDGEDLLA 81 (534)
T ss_pred CCCcceeeeccEEEEecCCcceEeeccceeeecCCCEEEEEecCCCCccHHHHHHHHhcCCCcccCccceeEEcChhhhc
Confidence 4567899999998884 3456799999999999999999999999999999999999964 37999999999877
Q ss_pred CCCCCCCCCCCCcEEEEecCCCCCCCcc-cHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC--ccCCCCCCCCC
Q 035832 86 EPNNSPEPLPPEKVGIVFQFPERYFVAD-NVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG--TSLDKDPHSLS 162 (245)
Q Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~~~~~~~-tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~--~~~~~~~~~LS 162 (245)
.+.......+..+|+++||+|...+++. |+...+.-......+ ...+..+.++.++|+.+|+.+ ..++++|++||
T Consensus 82 ~se~~lr~iRG~~I~MIFQEPMtSLNPl~tIg~Qi~E~l~~Hrg--~~~~~Ar~r~lelL~~VgI~~p~~rl~~yPHeLS 159 (534)
T COG4172 82 ASERQLRGVRGNKIGMIFQEPMTSLNPLHTIGKQLAEVLRLHRG--LSRAAARARALELLELVGIPEPEKRLDAYPHELS 159 (534)
T ss_pred CCHHHHhhhcccceEEEecccccccCcHhHHHHHHHHHHHHHhc--ccHHHHHHHHHHHHHHcCCCchhhhhhhCCcccC
Confidence 6554445555678999999997655543 665555443111111 123445667889999999964 24688999999
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEe
Q 035832 163 GGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240 (245)
Q Consensus 163 gGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~ 240 (245)
|||||||+||+||+.+|++||+||||.+||...+.+++++|+++++ ++++++||||+..+..++|||++|.+|+++..
T Consensus 160 GGqRQRVMIAMALan~P~lLIADEPTTALDVtvQaQIL~Ll~~Lq~~~gMa~lfITHDL~iVr~~ADrV~VM~~G~ivE~ 239 (534)
T COG4172 160 GGQRQRVMIAMALANEPDLLIADEPTTALDVTVQAQILDLLKELQAELGMAILFITHDLGIVRKFADRVYVMQHGEIVET 239 (534)
T ss_pred cchhhHHHHHHHHcCCCCeEeecCCcchhhhhhHHHHHHHHHHHHHHhCcEEEEEeccHHHHHHhhhhEEEEeccEEeec
Confidence 9999999999999999999999999999999999999999999974 58999999999999999999999999999876
Q ss_pred cc
Q 035832 241 QR 242 (245)
Q Consensus 241 ~~ 242 (245)
+.
T Consensus 240 ~~ 241 (534)
T COG4172 240 GT 241 (534)
T ss_pred Cc
Confidence 53
|
|
| >PRK13541 cytochrome c biogenesis protein CcmA; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-47 Score=314.79 Aligned_cols=191 Identities=22% Similarity=0.279 Sum_probs=160.6
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
||+++|++++|++ +.+++ +||+|++||+++|+||||||||||+++|+|+++|++|+|+++|.++.... +
T Consensus 1 ~l~~~~l~~~~~~--~~l~~-vs~~i~~Ge~~~l~G~nGsGKSTLl~~l~G~~~~~~G~i~~~g~~i~~~~--------~ 69 (195)
T PRK13541 1 MLSLHQLQFNIEQ--KNLFD-LSITFLPSAITYIKGANGCGKSSLLRMIAGIMQPSSGNIYYKNCNINNIA--------K 69 (195)
T ss_pred CeEEEEeeEEECC--cEEEE-EEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCcccChhh--------h
Confidence 4889999999964 34554 99999999999999999999999999999999999999999998763211 2
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
+.++|++|++. +++..|+.+|+.+..... . ..+.+.++++.+++.+. .++++.+||||||||++||||++
T Consensus 70 ~~~~~~~~~~~-~~~~~tv~~~l~~~~~~~-~-------~~~~~~~~l~~~~l~~~-~~~~~~~LS~G~~~rl~la~al~ 139 (195)
T PRK13541 70 PYCTYIGHNLG-LKLEMTVFENLKFWSEIY-N-------SAETLYAAIHYFKLHDL-LDEKCYSLSSGMQKIVAIARLIA 139 (195)
T ss_pred hhEEeccCCcC-CCccCCHHHHHHHHHHhc-c-------cHHHHHHHHHHcCCHhh-hccChhhCCHHHHHHHHHHHHHh
Confidence 45899999874 556789999998752110 0 12346678899999865 68999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-cCceEEEEecChhHHHhhccEE
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLK-KELTILVVSHDLKEMAALVDHS 229 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~~~tiii~tHd~~~~~~~~d~v 229 (245)
.+|+++||||||+|||+.+++.+.++|++.. ++.|+|++||+++++.. +|-+
T Consensus 140 ~~p~~lllDEP~~~LD~~~~~~l~~~l~~~~~~~~tiii~sh~~~~i~~-~~~~ 192 (195)
T PRK13541 140 CQSDLWLLDEVETNLSKENRDLLNNLIVMKANSGGIVLLSSHLESSIKS-AQIL 192 (195)
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCccccch-hhee
Confidence 9999999999999999999999999998664 46899999999998754 6654
|
|
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-46 Score=355.86 Aligned_cols=202 Identities=24% Similarity=0.306 Sum_probs=171.3
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
+.++|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|++++ +
T Consensus 319 ~~~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~l~G~~~p~~G~i~~~~-~----------- 384 (552)
T TIGR03719 319 GDKVIEAENLSKGFGD--KLLIDDLSFKLPPGGIVGVIGPNGAGKSTLFRMITGQEQPDSGTIKIGE-T----------- 384 (552)
T ss_pred CCeEEEEeeEEEEECC--eeeeccceEEEcCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEECC-c-----------
Confidence 3568999999999964 4699999999999999999999999999999999999999999999842 1
Q ss_pred CCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
.+|||+||++..+++..|+.+|+.++....... .. .....++++.+++.....++++.+|||||||||+|||
T Consensus 385 ---~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~---~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgGe~qrv~la~ 456 (552)
T TIGR03719 385 ---VKLAYVDQSRDALDPNKTVWEEISGGLDIIQLG---KR--EVPSRAYVGRFNFKGSDQQKKVGQLSGGERNRVHLAK 456 (552)
T ss_pred ---eEEEEEeCCccccCCCCcHHHHHHhhccccccC---cc--hHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHH
Confidence 159999999643566789999998863211110 01 1134568999999643358999999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeC-CeEEE
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDM-GGFLV 239 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~-G~i~~ 239 (245)
||+.+|++|||||||+|||+.+++.++++|+++. .|||+||||++++..+||++++|++ |+++.
T Consensus 457 al~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~~viivsHd~~~~~~~~d~i~~l~~~~~~~~ 521 (552)
T TIGR03719 457 TLKSGGNVLLLDEPTNDLDVETLRALEEALLEFA--GCAVVISHDRWFLDRIATHILAFEGDSHVEW 521 (552)
T ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHCC--CeEEEEeCCHHHHHHhCCEEEEEECCCeEEE
Confidence 9999999999999999999999999999999984 4899999999999999999999987 57654
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >TIGR03719 ABC_ABC_ChvD ATP-binding cassette protein, ChvD family | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-46 Score=356.08 Aligned_cols=203 Identities=28% Similarity=0.315 Sum_probs=170.7
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
+||+++||+++|+++ +++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 3 ~~i~~~nls~~~~~~-~~il~~is~~i~~Ge~~~liG~NGsGKSTLl~~i~G~~~p~~G~i~~~~--------------- 66 (552)
T TIGR03719 3 YIYTMNRVSKVVPPK-KEILKDISLSFFPGAKIGVLGLNGAGKSTLLRIMAGVDKEFNGEARPAP--------------- 66 (552)
T ss_pred EEEEEeeEEEecCCC-CeeecCceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecC---------------
Confidence 479999999999622 4699999999999999999999999999999999999999999999853
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCC-------------CchhHH--------------------HHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQS-------------GSIQLK--------------------EYLALNLQR 142 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~-------------~~~~~~--------------------~~~~~~~~~ 142 (245)
..+|||+||++. +++.+|+.||+.++..... ...... .....++.+
T Consensus 67 ~~~i~~v~Q~~~-~~~~~tv~e~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 145 (552)
T TIGR03719 67 GIKVGYLPQEPQ-LDPTKTVRENVEEGVAEIKDALDRFNEISAKFAEPDADMDALLAEQAELQEIIDAADAWDLDRKLEI 145 (552)
T ss_pred CCEEEEEeccCC-CCCCCcHHHHHHHhhHHHHHHHHHHHHHHHHhccCchhhHHHHHHHHHHHHHHHhcCcchhHHHHHH
Confidence 136999999985 5667899999987531100 000000 001234567
Q ss_pred HHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHH
Q 035832 143 AINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEM 222 (245)
Q Consensus 143 ~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~ 222 (245)
+++.+++.. .++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|+++. .|||+||||++++
T Consensus 146 ~l~~~~l~~--~~~~~~~LSgGqkqrv~la~al~~~p~lLLLDEPt~~LD~~~~~~l~~~L~~~~--~tvIiisHd~~~~ 221 (552)
T TIGR03719 146 AMDALRCPP--WDADVTKLSGGERRRVALCRLLLSKPDMLLLDEPTNHLDAESVAWLEQHLQEYP--GTVVAVTHDRYFL 221 (552)
T ss_pred HHhhCCCCc--ccCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCCCChHHHHHHHHHHHhCC--CeEEEEeCCHHHH
Confidence 788888853 588999999999999999999999999999999999999999999999998873 5999999999999
Q ss_pred HhhccEEEEEeCCeEEE
Q 035832 223 AALVDHSWRMDMGGFLV 239 (245)
Q Consensus 223 ~~~~d~v~~l~~G~i~~ 239 (245)
..+||++++|++|+++.
T Consensus 222 ~~~~d~v~~l~~g~i~~ 238 (552)
T TIGR03719 222 DNVAGWILELDRGRGIP 238 (552)
T ss_pred HhhcCeEEEEECCEEEE
Confidence 99999999999999863
|
Members of this protein family have two copies of the ABC transporter ATP-binding cassette, but are found outside the common ABC transporter operon structure that features integral membrane permease proteins and substrate-binding proteins encoded next to the ATP-binding cassette (ABC domain) protein. The member protein ChvD from Agrobacterium tumefaciens was identified as both a candidate to interact with VirB8, based on yeast two-hybrid analysis, and as an apparent regulator of VirG. The general function of this protein family is unknown. |
| >KOG0057 consensus Mitochondrial Fe/S cluster exporter, ABC superfamily [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-47 Score=345.47 Aligned_cols=216 Identities=26% Similarity=0.379 Sum_probs=175.3
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.|+++||+++|+.+ +++|+++||+|++||.+||+|+|||||||++|+|.+++. ++|+|++||+++...... ..|
T Consensus 351 ~I~F~dV~f~y~~k-~~iL~gvsf~I~kGekVaIvG~nGsGKSTilr~LlrF~d-~sG~I~IdG~dik~~~~~----SlR 424 (591)
T KOG0057|consen 351 SIEFDDVHFSYGPK-RKVLKGVSFTIPKGEKVAIVGSNGSGKSTILRLLLRFFD-YSGSILIDGQDIKEVSLE----SLR 424 (591)
T ss_pred cEEEEeeEEEeCCC-CceecceeEEecCCCEEEEECCCCCCHHHHHHHHHHHhc-cCCcEEECCeeHhhhChH----Hhh
Confidence 49999999999863 569999999999999999999999999999999999999 899999999998654322 347
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
+-||||||+. .+++.|+.+|+.+|.+......-.+......+.+.+..+ |-.. ....+...|||||||||+||||
T Consensus 425 ~~Ig~VPQd~--~LFndTIl~NI~YGn~sas~eeV~e~~k~a~~hd~i~~l~~GY~T-~VGerG~~LSGGekQrvslaRa 501 (591)
T KOG0057|consen 425 QSIGVVPQDS--VLFNDTILYNIKYGNPSASDEEVVEACKRAGLHDVISRLPDGYQT-LVGERGLMLSGGEKQRVSLARA 501 (591)
T ss_pred hheeEeCCcc--cccchhHHHHhhcCCCCcCHHHHHHHHHHcCcHHHHHhccccchh-hHhhcccccccchHHHHHHHHH
Confidence 7899999997 456789999999985443211000000111123333333 2222 2456677899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
++.+|+++++|||||+||.++.+++++.+.....++|+|+|-|+++.+. .||+|+++++|++...+.
T Consensus 502 ~lKda~Il~~DEaTS~LD~~TE~~i~~~i~~~~~~rTvI~IvH~l~ll~-~~DkI~~l~nG~v~e~gt 568 (591)
T KOG0057|consen 502 FLKDAPILLLDEATSALDSETEREILDMIMDVMSGRTVIMIVHRLDLLK-DFDKIIVLDNGTVKEYGT 568 (591)
T ss_pred HhcCCCeEEecCcccccchhhHHHHHHHHHHhcCCCeEEEEEecchhHh-cCCEEEEEECCeeEEecc
Confidence 9999999999999999999999999999999767899999999999875 689999999999976553
|
|
| >TIGR02868 CydC thiol reductant ABC exporter, CydC subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-47 Score=359.81 Aligned_cols=185 Identities=35% Similarity=0.521 Sum_probs=155.1
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.|+++||+|+|+++ +++|+|+||++++||.++|+||||||||||+++|+|+++|++|+|.++|.++... . ..++
T Consensus 334 ~I~~~~vsf~Y~~~-~~vL~~isl~i~~G~~vaIvG~SGsGKSTLl~lL~g~~~p~~G~I~i~g~~i~~~-~----~~lr 407 (529)
T TIGR02868 334 TLELRDLSFGYPGS-PPVLDGVSLDLPPGERVAILGPSGSGKSTLLMLLTGLLDPLQGEVTLDGVSVSSL-Q----DELR 407 (529)
T ss_pred eEEEEEEEEecCCC-CceeecceEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhH-H----HHHH
Confidence 59999999999753 4699999999999999999999999999999999999999999999999998643 2 2356
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCC-----------CCccCCCCCCCCChHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGL-----------DGTSLDKDPHSLSGGY 165 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~~LSgGq 165 (245)
++++||||+|. +++.|++||+.++.+... ++++.++++..++ +.. .......|||||
T Consensus 408 ~~i~~V~Q~~~--lF~~TI~eNI~~g~~~~~---------~e~i~~al~~a~l~~~i~~lp~GldT~-ige~G~~LSGGQ 475 (529)
T TIGR02868 408 RRISVFAQDAH--LFDTTVRDNLRLGRPDAT---------DEELWAALERVGLADWLRSLPDGLDTV-LGEGGARLSGGE 475 (529)
T ss_pred hheEEEccCcc--cccccHHHHHhccCCCCC---------HHHHHHHHHHcCCHHHHHhCcccccch-hccccCcCCHHH
Confidence 78999999983 557899999999733211 1123334444433 322 345567899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecCh
Q 035832 166 KRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDL 219 (245)
Q Consensus 166 kqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~ 219 (245)
|||++|||||+.+|++||||||||+||+++.+.+.+.|.++.+++|+|+|||++
T Consensus 476 rQRiaiARall~~~~iliLDE~TSaLD~~te~~I~~~l~~~~~~~TvIiItHrl 529 (529)
T TIGR02868 476 RQRLALARALLADAPILLLDEPTEHLDAGTESELLEDLLAALSGKTVVVITHHL 529 (529)
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHhcCCCEEEEEecCC
Confidence 999999999999999999999999999999999999999887789999999984
|
The gene pair cydCD encodes an ABC-family transporter in which each gene contains an N-terminal membrane-spanning domain (pfam00664) and a C-terminal ATP-binding domain (pfam00005). In E. coli these genes were discovered as mutants which caused the terminal heme-copper oxidase complex cytochrome bd to fail to assemble. Recent work has shown that the transporter is involved in export of redox-active thiol compounds such as cysteine and glutathione. The linkage to assembly of the cytochrome bd complex is further supported by the conserved operon structure found outside the gammaproteobacteria (cydABCD) containing both the transporter and oxidase genes components. The genes used as the seed members for this model are all either found in the gammproteobacterial context or the CydABCD context. All members of this family scoring above trusted at the time of its creation were from genomes which encode a cytochrome bd complex. |
| >PRK10535 macrolide transporter ATP-binding /permease protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-46 Score=362.03 Aligned_cols=221 Identities=27% Similarity=0.427 Sum_probs=185.1
Q ss_pred ceEEEEeEEEECCCC--ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGT--QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~--~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
+||+++|++++|+++ .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++..........
T Consensus 3 ~~l~~~nl~~~y~~~~~~~~il~~vs~~i~~Ge~~~l~G~nGsGKSTLl~~i~Gl~~~~~G~i~~~g~~i~~~~~~~~~~ 82 (648)
T PRK10535 3 ALLELKDIRRSYPSGEEQVEVLKGISLDIYAGEMVAIVGASGSGKSTLMNILGCLDKPTSGTYRVAGQDVATLDADALAQ 82 (648)
T ss_pred cEEEEeeEEEEeCCCCCCeeeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEcCcCCHHHHHH
Confidence 479999999999632 246999999999999999999999999999999999999999999999999875432111001
Q ss_pred CCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
.+++.++|+||++. +++..|+.||+.+..... .. ...+..+++.++++.+|+.+. .++.+.+||+||+||++|||
T Consensus 83 ~~~~~i~~v~q~~~-l~~~~tv~enl~~~~~~~-~~--~~~~~~~~~~~~l~~lgl~~~-~~~~~~~LS~Gq~qrv~LAr 157 (648)
T PRK10535 83 LRREHFGFIFQRYH-LLSHLTAAQNVEVPAVYA-GL--ERKQRLLRAQELLQRLGLEDR-VEYQPSQLSGGQQQRVSIAR 157 (648)
T ss_pred HHhccEEEEeCCcc-cCCCCCHHHHHHHHHHHc-CC--CHHHHHHHHHHHHHHCCChhh-hcCCcccCCHHHHHHHHHHH
Confidence 12467999999984 677789999998742111 11 122334567889999999875 79999999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
||+.+|++|||||||+|||+.+++.+.++|+++++ +.|+|++||+++.+. .||++++|++|+++.++.
T Consensus 158 aL~~~P~lLllDEP~~gLD~~s~~~l~~ll~~l~~~g~tilivsH~~~~~~-~~d~i~~l~~G~i~~~g~ 226 (648)
T PRK10535 158 ALMNGGQVILADEPTGALDSHSGEEVMAILHQLRDRGHTVIIVTHDPQVAA-QAERVIEIRDGEIVRNPP 226 (648)
T ss_pred HHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHH-hCCEEEEEECCEEEeecC
Confidence 99999999999999999999999999999999864 689999999999875 699999999999987654
|
|
| >PRK11819 putative ABC transporter ATP-binding protein; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.3e-46 Score=353.56 Aligned_cols=201 Identities=25% Similarity=0.314 Sum_probs=170.5
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
.++|+++|++++|++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++ +
T Consensus 322 ~~~l~~~~l~~~~~~--~~~l~~isl~i~~Ge~~~l~G~NGsGKSTLl~~i~G~~~p~~G~i~~~~-~------------ 386 (556)
T PRK11819 322 DKVIEAENLSKSFGD--RLLIDDLSFSLPPGGIVGIIGPNGAGKSTLFKMITGQEQPDSGTIKIGE-T------------ 386 (556)
T ss_pred CeEEEEEeEEEEECC--eeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECC-c------------
Confidence 458999999999964 4699999999999999999999999999999999999999999999842 1
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
.++||+||++..+++..|+.+|+.++....... .. ......+++.+++.....++++.+|||||||||+||||
T Consensus 387 --~~i~~v~q~~~~~~~~~tv~e~l~~~~~~~~~~---~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~la~a 459 (556)
T PRK11819 387 --VKLAYVDQSRDALDPNKTVWEEISGGLDIIKVG---NR--EIPSRAYVGRFNFKGGDQQKKVGVLSGGERNRLHLAKT 459 (556)
T ss_pred --eEEEEEeCchhhcCCCCCHHHHHHhhccccccc---cc--HHHHHHHHHhCCCChhHhcCchhhCCHHHHHHHHHHHH
Confidence 159999998633566789999998763211100 00 11244689999996433589999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeC-CeEEE
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDM-GGFLV 239 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~-G~i~~ 239 (245)
|+.+|++|||||||+|||+.+++.++++|.++. .|||++|||++++..+||++++|++ |++..
T Consensus 460 l~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~--~tvi~vtHd~~~~~~~~d~i~~l~~~g~~~~ 523 (556)
T PRK11819 460 LKQGGNVLLLDEPTNDLDVETLRALEEALLEFP--GCAVVISHDRWFLDRIATHILAFEGDSQVEW 523 (556)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhCC--CeEEEEECCHHHHHHhCCEEEEEECCCeEEE
Confidence 999999999999999999999999999999874 4899999999999999999999996 67764
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-47 Score=389.15 Aligned_cols=217 Identities=26% Similarity=0.357 Sum_probs=174.9
Q ss_pred eEEEEeEEEECCCC-ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC------------------------
Q 035832 17 CLEVRDVSYRPPGT-QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP------------------------ 71 (245)
Q Consensus 17 ~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p------------------------ 71 (245)
.|+++||+|+|+++ +.++|+|+||+|++|+.+||+||||||||||+++|+|+++|
T Consensus 1165 ~I~f~nVsF~Y~~~~~~~vL~~lsl~i~~G~~vAIVG~SGsGKSTl~~LL~r~ydp~~~~~~~~~~~~~~~~~~~~~~~~ 1244 (1466)
T PTZ00265 1165 KIEIMDVNFRYISRPNVPIYKDLTFSCDSKKTTAIVGETGSGKSTVMSLLMRFYDLKNDHHIVFKNEHTNDMTNEQDYQG 1244 (1466)
T ss_pred eEEEEEEEEECCCCCCCccccCeeEEEcCCCEEEEECCCCCCHHHHHHHHHHhCCCcccccccccccccccccccccccc
Confidence 49999999999743 34799999999999999999999999999999999999998
Q ss_pred ------------------------------CcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHh
Q 035832 72 ------------------------------TSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIF 121 (245)
Q Consensus 72 ------------------------------~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~ 121 (245)
++|+|+++|.++..... ..+|++||||+|+|. ++..|++||+.+
T Consensus 1245 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~I~idG~di~~~~~----~~lR~~i~~V~Qep~--LF~gTIreNI~~ 1318 (1466)
T PTZ00265 1245 DEEQNVGMKNVNEFSLTKEGGSGEDSTVFKNSGKILLDGVDICDYNL----KDLRNLFSIVSQEPM--LFNMSIYENIKF 1318 (1466)
T ss_pred ccccccccccccccccccccccccccccCCCCCeEEECCEEHHhCCH----HHHHhhccEeCCCCc--cccccHHHHHhc
Confidence 69999999999865432 235788999999983 458999999999
Q ss_pred cCCCCCCchhHHH-HHHHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 035832 122 GWPRQSGSIQLKE-YLALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARAD 198 (245)
Q Consensus 122 ~~~~~~~~~~~~~-~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~ 198 (245)
+.+.... ..... .....+.+.++.+ |++.. .......||||||||++|||||+.+|+|||||||||+||+++.+.
T Consensus 1319 g~~~at~-eeI~~A~k~A~l~~fI~~LP~GydT~-VGe~G~~LSGGQkQRIaIARALlr~p~ILLLDEaTSaLD~~sE~~ 1396 (1466)
T PTZ00265 1319 GKEDATR-EDVKRACKFAAIDEFIESLPNKYDTN-VGPYGKSLSGGQKQRIAIARALLREPKILLLDEATSSLDSNSEKL 1396 (1466)
T ss_pred CCCCCCH-HHHHHHHHHcCCHHHHHhCccccCCc-cCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHHHH
Confidence 8432110 00000 0011223344443 44433 456677899999999999999999999999999999999999999
Q ss_pred HHHHHHHhh--cCceEEEEecChhHHHhhccEEEEEeC----CeEEEecc
Q 035832 199 VVKLLKHLK--KELTILVVSHDLKEMAALVDHSWRMDM----GGFLVEQR 242 (245)
Q Consensus 199 i~~~l~~l~--~~~tiii~tHd~~~~~~~~d~v~~l~~----G~i~~~~~ 242 (245)
|.+.|.++. +++|+|+|||++..+. .||+|++|++ |+++.+.+
T Consensus 1397 I~~~L~~~~~~~~~TvIiIaHRlsti~-~aD~Ivvl~~~~~~G~iv~e~G 1445 (1466)
T PTZ00265 1397 IEKTIVDIKDKADKTIITIAHRIASIK-RSDKIVVFNNPDRTGSFVQAHG 1445 (1466)
T ss_pred HHHHHHHHhccCCCEEEEEechHHHHH-hCCEEEEEeCCCCCCCEEEEec
Confidence 999999985 4799999999998765 6999999999 89775544
|
|
| >COG1119 ModF ABC-type molybdenum transport system, ATPase component/photorepair protein PhrA [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-47 Score=317.74 Aligned_cols=223 Identities=30% Similarity=0.415 Sum_probs=187.6
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
.+++|+++|++++|++ +++|+|+|++|++||..+|+|||||||||||++++|.++|++|.+.+.|+....... ..
T Consensus 28 ~~~li~l~~v~v~r~g--k~iL~~isW~V~~ge~W~I~G~NGsGKTTLL~ll~~~~~pssg~~~~~G~~~G~~~~---~~ 102 (257)
T COG1119 28 NEPLIELKNVSVRRNG--KKILGDLSWQVNPGEHWAIVGPNGAGKTTLLSLLTGEHPPSSGDVTLLGRRFGKGET---IF 102 (257)
T ss_pred CcceEEecceEEEECC--EeeccccceeecCCCcEEEECCCCCCHHHHHHHHhcccCCCCCceeeeeeeccCCcc---hH
Confidence 4567999999999975 679999999999999999999999999999999999999999999999987754322 13
Q ss_pred CCCCcEEEEecCCCC-CCCcccHHHHHHhcCCCCCCch--hHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHH
Q 035832 94 LPPEKVGIVFQFPER-YFVADNVLDEVIFGWPRQSGSI--QLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLA 170 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~-~~~~~tv~e~l~~~~~~~~~~~--~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ 170 (245)
.+|++||||.-.-.. +....+++|-++.|+....+.+ ...+....++..+++.+|+.+. .+++..+||-||||||.
T Consensus 103 elrk~IG~vS~~L~~~~~~~~~v~dvVlSg~~~siG~y~~~~~~~~~~~a~~lle~~g~~~l-a~r~~~~LS~Ge~rrvL 181 (257)
T COG1119 103 ELRKRIGLVSSELHERFRVRETVRDVVLSGFFASIGIYQEDLTAEDLAAAQWLLELLGAKHL-ADRPFGSLSQGEQRRVL 181 (257)
T ss_pred HHHHHhCccCHHHHhhcccccccceeeeecccccccccccCCCHHHHHHHHHHHHHcchhhh-ccCchhhcCHhHHHHHH
Confidence 457899999654322 2345678888876643222211 1233455678899999999985 79999999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc---CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 171 LAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK---ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 171 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~---~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
|||||+.+|++|||||||+|||...++.+.+.|.++.. ..++|+|||..+++....++++.+++|+++..+.
T Consensus 182 iaRALv~~P~LLiLDEP~~GLDl~~re~ll~~l~~~~~~~~~~~ll~VtHh~eEi~~~~th~lll~~g~v~~~g~ 256 (257)
T COG1119 182 IARALVKDPELLILDEPAQGLDLIAREQLLNRLEELAASPGAPALLFVTHHAEEIPPCFTHRLLLKEGEVVAQGK 256 (257)
T ss_pred HHHHHhcCCCEEEecCccccCChHHHHHHHHHHHHHhcCCCCceEEEEEcchhhcccccceEEEeeCCceeeccc
Confidence 99999999999999999999999999999999999863 3799999999999999999999999999988653
|
|
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-46 Score=357.72 Aligned_cols=203 Identities=26% Similarity=0.307 Sum_probs=173.2
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
+.++|+++||+++|++ +++|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+ |.+
T Consensus 316 ~~~~l~~~~l~~~~~~--~~il~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~-~~~----------- 381 (635)
T PRK11147 316 GKIVFEMENVNYQIDG--KQLVKDFSAQVQRGDKIALIGPNGCGKTTLLKLMLGQLQADSGRIHC-GTK----------- 381 (635)
T ss_pred CCceEEEeeeEEEECC--eEEEcCcEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEE-CCC-----------
Confidence 4568999999999964 46999999999999999999999999999999999999999999988 421
Q ss_pred CCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
-+|||++|++..+++..||.+|+.++....... . ....+.++++.+++.....++++.+|||||||||+|||
T Consensus 382 ---~~i~y~~q~~~~l~~~~tv~e~l~~~~~~~~~~---~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgGekqRl~la~ 453 (635)
T PRK11147 382 ---LEVAYFDQHRAELDPEKTVMDNLAEGKQEVMVN---G--RPRHVLGYLQDFLFHPKRAMTPVKALSGGERNRLLLAR 453 (635)
T ss_pred ---cEEEEEeCcccccCCCCCHHHHHHhhccccccc---c--hHHHHHHHHHhcCCCHHHHhChhhhCCHHHHHHHHHHH
Confidence 259999998644667789999998753211000 0 12346788999999642368999999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEe-CCeEEEe
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMD-MGGFLVE 240 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~-~G~i~~~ 240 (245)
||+.+|++|||||||++||+.+++.+.++|+++ +.|||+||||.+++..+||++++|+ +|+++..
T Consensus 454 al~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~~--~~tvi~vSHd~~~~~~~~d~i~~l~~~g~i~~~ 519 (635)
T PRK11147 454 LFLKPSNLLILDEPTNDLDVETLELLEELLDSY--QGTVLLVSHDRQFVDNTVTECWIFEGNGKIGRY 519 (635)
T ss_pred HHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHhC--CCeEEEEECCHHHHHHhcCEEEEEeCCCeEEEc
Confidence 999999999999999999999999999999887 4599999999999999999999998 7998754
|
|
| >cd03237 ABC_RNaseL_inhibitor_domain2 The ATPase domain 2 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.1e-46 Score=321.32 Aligned_cols=186 Identities=27% Similarity=0.312 Sum_probs=156.3
Q ss_pred EECCCCccceeeeeeEEEc-----CCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcE
Q 035832 25 YRPPGTQVDILNGVSFSLP-----EKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKV 99 (245)
Q Consensus 25 ~~y~~~~~~il~~vsl~i~-----~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i 99 (245)
|+|++. .+.+++++|++. +||+++|+||||||||||+++|+|+++|++|+|.++|. ++
T Consensus 1 ~~y~~~-~~~~~~~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~L~G~~~p~~G~i~~~g~----------------~i 63 (246)
T cd03237 1 YTYPTM-KKTLGEFTLEVEGGSISESEVIGILGPNGIGKTTFIKMLAGVLKPDEGDIEIELD----------------TV 63 (246)
T ss_pred CCCccc-ccccCcEEEEEecCCcCCCCEEEEECCCCCCHHHHHHHHhCCCcCCCCeEEECCc----------------eE
Confidence 356543 346788888876 79999999999999999999999999999999999752 58
Q ss_pred EEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCC
Q 035832 100 GIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVP 179 (245)
Q Consensus 100 ~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p 179 (245)
+|++|++. .++..||.|++.+..... .. ......++++.+++.+. .++++.+|||||||||+|||||+.+|
T Consensus 64 ~~~~q~~~-~~~~~tv~e~l~~~~~~~-~~------~~~~~~~~l~~l~l~~~-~~~~~~~LSgGe~qrv~iaraL~~~p 134 (246)
T cd03237 64 SYKPQYIK-ADYEGTVRDLLSSITKDF-YT------HPYFKTEIAKPLQIEQI-LDREVPELSGGELQRVAIAACLSKDA 134 (246)
T ss_pred EEeccccc-CCCCCCHHHHHHHHhhhc-cc------cHHHHHHHHHHcCCHHH-hhCChhhCCHHHHHHHHHHHHHhcCC
Confidence 99999975 445789999987542110 00 01234678889999875 69999999999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCe
Q 035832 180 DLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGG 236 (245)
Q Consensus 180 ~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~ 236 (245)
+++||||||++||+.++..+.++|+++.+ ++|||++|||++++..+||++++|+++.
T Consensus 135 ~llllDEPt~~LD~~~~~~l~~~l~~~~~~~~~tiiivsHd~~~~~~~~d~i~~l~~~~ 193 (246)
T cd03237 135 DIYLLDEPSAYLDVEQRLMASKVIRRFAENNEKTAFVVEHDIIMIDYLADRLIVFEGEP 193 (246)
T ss_pred CEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCCC
Confidence 99999999999999999999999999853 5899999999999999999999997543
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity of more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >PLN03211 ABC transporter G-25; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-46 Score=361.03 Aligned_cols=212 Identities=26% Similarity=0.298 Sum_probs=173.5
Q ss_pred EEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC--cceEEEcCccCCCCCCCCCCCCCCC
Q 035832 20 VRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPT--SGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 20 ~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~--~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
++|++++|++ +.+|+|+||++++||++||+||||||||||+++|+|+.+|+ +|+|.++|+++.. ..++
T Consensus 71 ~~~l~~~~~~--~~iL~~vs~~i~~Ge~~aI~GpnGaGKSTLL~iLaG~~~~~~~sG~I~inG~~~~~--------~~~~ 140 (659)
T PLN03211 71 ISDETRQIQE--RTILNGVTGMASPGEILAVLGPSGSGKSTLLNALAGRIQGNNFTGTILANNRKPTK--------QILK 140 (659)
T ss_pred cccccccCCC--CeeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCceeEEEEECCEECch--------hhcc
Confidence 3445555643 56999999999999999999999999999999999999885 8999999987632 1235
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCcc----CCCCCCCCChHHHHHHHHHH
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTS----LDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~----~~~~~~~LSgGqkqrv~iAr 173 (245)
++|||+|++. +++.+||+||+.+............++..++++++++.+||.+.. .++.+.+|||||||||+||+
T Consensus 141 ~i~yv~Q~~~-l~~~lTV~E~l~~~a~~~~~~~~~~~~~~~~v~~~l~~lgL~~~~~t~vg~~~~~~LSgGerqRv~ia~ 219 (659)
T PLN03211 141 RTGFVTQDDI-LYPHLTVRETLVFCSLLRLPKSLTKQEKILVAESVISELGLTKCENTIIGNSFIRGISGGERKRVSIAH 219 (659)
T ss_pred ceEEECcccc-cCCcCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhhcCceeCCCCCCCcChhhhhHHHHHH
Confidence 6999999974 667789999998852111110011223345678899999997641 14467889999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChh-HHHhhccEEEEEeCCeEEEecc
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLK-EMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~-~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
+|+.+|++|+|||||+|||+.++..+.+.|+++++ +.|||++||+++ .+.++||++++|++|+++..+.
T Consensus 220 aL~~~P~iLlLDEPtsgLD~~~~~~l~~~L~~l~~~g~TvI~~sH~~~~~i~~~~D~iilL~~G~iv~~G~ 290 (659)
T PLN03211 220 EMLINPSLLILDEPTSGLDATAAYRLVLTLGSLAQKGKTIVTSMHQPSSRVYQMFDSVLVLSEGRCLFFGK 290 (659)
T ss_pred HHHhCCCEEEEeCCCCCcCHHHHHHHHHHHHHHHhCCCEEEEEecCCCHHHHHhhceEEEecCCcEEEECC
Confidence 99999999999999999999999999999999874 689999999998 5889999999999999987653
|
|
| >TIGR01187 potA spermidine/putrescine ABC transporter ATP-binding subunit | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-46 Score=333.98 Aligned_cols=181 Identities=36% Similarity=0.525 Sum_probs=155.6
Q ss_pred EECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCc
Q 035832 50 IFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGS 129 (245)
Q Consensus 50 liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~ 129 (245)
|+||||||||||+|+|+|+++|++|+|.++|+++...+. .+++++|+||++. +|+.+|+.+|+.++..... .
T Consensus 1 l~G~nGsGKSTLl~~iaGl~~p~~G~I~i~g~~i~~~~~------~~~~i~~v~q~~~-l~~~~tv~enl~~~~~~~~-~ 72 (325)
T TIGR01187 1 LLGPSGCGKTTLLRLLAGFEQPDSGSIMLDGEDVTNVPP------HLRHINMVFQSYA-LFPHMTVEENVAFGLKMRK-V 72 (325)
T ss_pred CcCCCCCCHHHHHHHHHCCCCCCceEEEECCEECCCCCH------HHCCEEEEecCcc-ccCCCcHHHHHHHHHhhcC-C
Confidence 589999999999999999999999999999998743211 2467999999984 6778899999998632111 1
Q ss_pred hhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-
Q 035832 130 IQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK- 208 (245)
Q Consensus 130 ~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~- 208 (245)
.......++.++++.+++.+. .++++.+|||||||||+|||||+.+|++|||||||+|||+.+++.+++.|+++.+
T Consensus 73 --~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgGq~qRvalaraL~~~p~lllLDEP~s~LD~~~~~~l~~~l~~l~~~ 149 (325)
T TIGR01187 73 --PRAEIKPRVLEALRLVQLEEF-ADRKPHQLSGGQQQRVALARALVFKPKILLLDEPLSALDKKLRDQMQLELKTIQEQ 149 (325)
T ss_pred --CHHHHHHHHHHHHHHcCCcch-hcCChhhCCHHHHHHHHHHHHHHhCCCEEEEeCCCccCCHHHHHHHHHHHHHHHHh
Confidence 122234567889999999875 7999999999999999999999999999999999999999999999999999853
Q ss_pred -CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 209 -ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 209 -~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+.|+|++|||++++..+||++++|++|+++..+
T Consensus 150 ~g~tiiivTHd~~e~~~~~d~i~vl~~G~i~~~g 183 (325)
T TIGR01187 150 LGITFVFVTHDQEEAMTMSDRIAIMRKGKIAQIG 183 (325)
T ss_pred cCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 589999999999999999999999999998654
|
This model describes spermidine/putrescine ABC transporter, ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Polyamines like spermidine and putrescine play vital role in cell proliferation, differentiation, and ion homeostasis. The concentration of polyamines within the cell are regulated by biosynthesis, degradation and transport (uptake and efflux included). |
| >COG4674 Uncharacterized ABC-type transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.5e-47 Score=307.76 Aligned_cols=221 Identities=28% Similarity=0.431 Sum_probs=193.5
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcC-ccCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRG-YNNDGEPNNSPEPL 94 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g-~~~~~~~~~~~~~~ 94 (245)
+.|+++|++++|++ ..+|+++||++.+||.-+|||||||||||++.+|+|-.+|+.|+|+++| .++.+.+.. ..
T Consensus 4 ~iL~~~~vsVsF~G--F~Aln~ls~~v~~Gelr~lIGpNGAGKTT~mD~ItGKtrp~~G~v~f~g~~dl~~~~e~---~I 78 (249)
T COG4674 4 IILYLDGVSVSFGG--FKALNDLSFSVDPGELRVLIGPNGAGKTTLMDVITGKTRPQEGEVLFDGDTDLTKLPEH---RI 78 (249)
T ss_pred ceEEEeceEEEEcc--eeeeeeeEEEecCCeEEEEECCCCCCceeeeeeecccCCCCcceEEEcCchhhccCCHH---HH
Confidence 67999999999975 5799999999999999999999999999999999999999999999999 787664422 12
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCch-----hHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSI-----QLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRL 169 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~-----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv 169 (245)
.+..||--||.|. .|...||+||+.++.......+ ......+.+++++|...||.+. .++....||-||||++
T Consensus 79 Ar~GIGRKFQ~Pt-Vfe~ltV~eNLelA~~~~k~v~a~L~~r~~~~e~~ride~La~igL~~~-~~~~A~~LSHGqKQwL 156 (249)
T COG4674 79 ARAGIGRKFQKPT-VFENLTVRENLELALNRDKSVFASLFARLRAEERRRIDELLATIGLGDE-RDRLAALLSHGQKQWL 156 (249)
T ss_pred HHhccCccccCCe-ehhhccHHHHHHHHhcCCcchHHHhhhhcChhHHHHHHHHHHHcccchh-hhhhhhhhccchhhhh
Confidence 3567999999996 6889999999988643222111 1123345679999999999986 6999999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEeccC
Q 035832 170 ALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQRI 243 (245)
Q Consensus 170 ~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~~ 243 (245)
.|++.++++|++|+||||++|+-.+...+.-++|+.++...+|++|.|||.++..++++|-+|+.|.+..+++.
T Consensus 157 EIGMll~Q~P~lLLlDEPvAGMTd~Et~~taeLl~~la~~hsilVVEHDM~Fvr~~A~~VTVlh~G~VL~EGsl 230 (249)
T COG4674 157 EIGMLLAQDPKLLLLDEPVAGMTDAETEKTAELLKSLAGKHSILVVEHDMGFVREIADKVTVLHEGSVLAEGSL 230 (249)
T ss_pred hhheeeccCCcEEEecCccCCCcHHHHHHHHHHHHHHhcCceEEEEeccHHHHHHhhheeEEEeccceeecccH
Confidence 99999999999999999999999999999999999999889999999999999999999999999999988753
|
|
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.3e-46 Score=356.72 Aligned_cols=198 Identities=29% Similarity=0.381 Sum_probs=168.9
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
+.++|+++||++.|++ +.+|+|+||+|++|++++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 309 ~~~~l~~~~l~~~y~~--~~il~~isl~i~~Ge~~~l~G~NGsGKSTLlk~l~G~~~p~~G~i~~~~------------- 373 (638)
T PRK10636 309 PNPLLKMEKVSAGYGD--RIILDSIKLNLVPGSRIGLLGRNGAGKSTLIKLLAGELAPVSGEIGLAK------------- 373 (638)
T ss_pred CCceEEEEeeEEEeCC--eeeeccceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEEECC-------------
Confidence 4568999999999964 4699999999999999999999999999999999999999999999852
Q ss_pred CCCCcEEEEecCCC-CCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHH
Q 035832 94 LPPEKVGIVFQFPE-RYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALA 172 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~-~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iA 172 (245)
..++||++|++. .+....++.+++... . . ......+.++++.+++.....++++.+|||||||||+||
T Consensus 374 --~~~igy~~Q~~~~~l~~~~~~~~~~~~~-~----~----~~~~~~~~~~L~~~~l~~~~~~~~~~~LSgGekqRl~La 442 (638)
T PRK10636 374 --GIKLGYFAQHQLEFLRADESPLQHLARL-A----P----QELEQKLRDYLGGFGFQGDKVTEETRRFSGGEKARLVLA 442 (638)
T ss_pred --CEEEEEecCcchhhCCccchHHHHHHHh-C----c----hhhHHHHHHHHHHcCCChhHhcCchhhCCHHHHHHHHHH
Confidence 125999999752 233445777776421 0 0 112345778899999964236899999999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEE
Q 035832 173 IQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLV 239 (245)
Q Consensus 173 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~ 239 (245)
|+|+.+|++|||||||++||+.+++.+.++|.++ +.|||+||||++++..+||++++|++|+++.
T Consensus 443 ~~l~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~gtvi~vSHd~~~~~~~~d~i~~l~~G~i~~ 507 (638)
T PRK10636 443 LIVWQRPNLLLLDEPTNHLDLDMRQALTEALIDF--EGALVVVSHDRHLLRSTTDDLYLVHDGKVEP 507 (638)
T ss_pred HHHhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCeEEEEeCCHHHHHHhCCEEEEEECCEEEE
Confidence 9999999999999999999999999999999988 3599999999999999999999999999973
|
|
| >cd03291 ABCC_CFTR1 The CFTR subfamily domain 1 | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-45 Score=319.86 Aligned_cols=202 Identities=24% Similarity=0.356 Sum_probs=158.6
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
+.+.|+++|+++.. +++|+++||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 36 ~~~~l~i~nls~~~----~~vL~~vs~~i~~Ge~~~liG~NGsGKSTLl~~I~Gl~~p~~G~I~i~g------------- 98 (282)
T cd03291 36 DDNNLFFSNLCLVG----APVLKNINLKIEKGEMLAITGSTGSGKTSLLMLILGELEPSEGKIKHSG------------- 98 (282)
T ss_pred CCCeEEEEEEEEec----ccceeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-------------
Confidence 45579999999852 3689999999999999999999999999999999999999999999865
Q ss_pred CCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHH-HHHHHHHHHHcCCC-CccCCCCCCCCChHHHHHHHH
Q 035832 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYL-ALNLQRAINWVGLD-GTSLDKDPHSLSGGYKRRLAL 171 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~l~-~~~~~~~~~~LSgGqkqrv~i 171 (245)
+++|++|++. ++ ..|+.+|+.++... ......... ...+.+.++.+... ....++.+.+||||||||++|
T Consensus 99 ----~i~yv~q~~~-l~-~~tv~enl~~~~~~--~~~~~~~~l~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~qrv~l 170 (282)
T cd03291 99 ----RISFSSQFSW-IM-PGTIKENIIFGVSY--DEYRYKSVVKACQLEEDITKFPEKDNTVLGEGGITLSGGQRARISL 170 (282)
T ss_pred ----EEEEEeCccc-cc-ccCHHHHhhccccc--CHHHHHHHHHHhCCHHHHHhccccccceecCCCCcCCHHHHHHHHH
Confidence 3899999974 44 46999999875221 100000000 00122233322211 011345678999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 172 AIQLVQVPDLLILDEPLAGLDWKARADVVKLL-KHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 172 Aral~~~p~llllDEPts~LD~~~~~~i~~~l-~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||||+.+|++|||||||+|||+.+++.+.+.+ ..+.++.|||++||+++++ ..||++++|++|+++..+
T Consensus 171 AraL~~~p~iLiLDEPt~gLD~~~~~~l~~~ll~~~~~~~tIiiisH~~~~~-~~~d~i~~l~~G~i~~~g 240 (282)
T cd03291 171 ARAVYKDADLYLLDSPFGYLDVFTEKEIFESCVCKLMANKTRILVTSKMEHL-KKADKILILHEGSSYFYG 240 (282)
T ss_pred HHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHhhCCCEEEEEeCChHHH-HhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999854 5666678999999999987 579999999999998654
|
The cystic fibrosis transmembrane regulator (CFTR), the product of the gene mutated in patients with cystic fibrosis, has adapted the ABC transporter structural motif to form a tightly regulated anion channel at the apical surface of many epithelia. Use of the term assembly of a functional ion channel implies the coming together of subunits, or at least smaller not-yet functional components of the active whole. In fact, on the basis of current knowledge only the CFTR polypeptide itself is required to form an ATP- and protein kinase A-dependent low-conductance chloride channel of the type present in the apical membrane of many epithelial cells. CFTR displays the typical organization (IM-ABC)2 and carries a characteristic hydrophilic R-domain that separates IM1-ABC1 from IM2-ABC2. |
| >PRK10522 multidrug transporter membrane component/ATP-binding component; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-46 Score=351.54 Aligned_cols=205 Identities=26% Similarity=0.299 Sum_probs=170.1
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.|+++|++|+|+++ .++|+|+||+|++||.++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..++
T Consensus 322 ~i~~~~v~f~y~~~-~~~l~~i~~~i~~G~~~aivG~sGsGKSTL~~ll~g~~~~~~G~i~~~g~~~~~~~~----~~~~ 396 (547)
T PRK10522 322 TLELRNVTFAYQDN-GFSVGPINLTIKRGELLFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVTAEQP----EDYR 396 (547)
T ss_pred eEEEEEEEEEeCCC-CeEEecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCCCCH----HHHh
Confidence 59999999999743 469999999999999999999999999999999999999999999999998754321 1246
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCC-----CCCCChHHHHHHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKD-----PHSLSGGYKRRLAL 171 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~-----~~~LSgGqkqrv~i 171 (245)
++++|++|++. +++.|+.+| + . . ..++.+.++++.+++... .+.. ..+||||||||++|
T Consensus 397 ~~i~~v~q~~~--lf~~ti~~n---~-~----~-----~~~~~~~~~~~~~~l~~~-~~~~~~~~~G~~LSgGq~qRl~l 460 (547)
T PRK10522 397 KLFSAVFTDFH--LFDQLLGPE---G-K----P-----ANPALVEKWLERLKMAHK-LELEDGRISNLKLSKGQKKRLAL 460 (547)
T ss_pred hheEEEecChh--HHHHhhccc---c-C----c-----hHHHHHHHHHHHcCCchh-hhccccCCCCCCCCHHHHHHHHH
Confidence 78999999983 456788776 1 1 0 112346677888888653 2221 45899999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh--cCceEEEEecChhHHHhhccEEEEEeCCeEEEeccC
Q 035832 172 AIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLK--KELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQRI 243 (245)
Q Consensus 172 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~--~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~~ 243 (245)
|||++.+|++|||||||++||+++.+.+.+.+.+.. .++|+|++||+++.+ ..||++++|++|+++...+.
T Consensus 461 ARal~~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tvi~itH~~~~~-~~~d~i~~l~~G~i~e~~~~ 533 (547)
T PRK10522 461 LLALAEERDILLLDEWAADQDPHFRREFYQVLLPLLQEMGKTIFAISHDDHYF-IHADRLLEMRNGQLSELTGE 533 (547)
T ss_pred HHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEEechHHH-HhCCEEEEEECCEEEEecCC
Confidence 999999999999999999999999999999987653 368999999999765 58999999999999876543
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-45 Score=350.86 Aligned_cols=196 Identities=29% Similarity=0.309 Sum_probs=170.8
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
+.++|+++|++++|++ . .|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++
T Consensus 337 ~~~~l~~~~ls~~~~~--~-~l~~~s~~i~~Geiv~l~G~NGsGKSTLlk~L~Gl~~p~~G~I~~~-------------- 399 (590)
T PRK13409 337 RETLVEYPDLTKKLGD--F-SLEVEGGEIYEGEVIGIVGPNGIGKTTFAKLLAGVLKPDEGEVDPE-------------- 399 (590)
T ss_pred CceEEEEcceEEEECC--E-EEEecceEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEe--------------
Confidence 4568999999999964 2 5999999999999999999999999999999999999999999884
Q ss_pred CCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
.+++|+||++. .++..||.+|+.++... .. . ...+.++++.+++.+. .++++.+|||||||||+|||
T Consensus 400 ---~~i~y~~Q~~~-~~~~~tv~e~l~~~~~~-~~----~---~~~~~~~L~~l~l~~~-~~~~~~~LSGGe~QRvaiAr 466 (590)
T PRK13409 400 ---LKISYKPQYIK-PDYDGTVEDLLRSITDD-LG----S---SYYKSEIIKPLQLERL-LDKNVKDLSGGELQRVAIAA 466 (590)
T ss_pred ---eeEEEeccccc-CCCCCcHHHHHHHHhhh-cC----h---HHHHHHHHHHCCCHHH-HhCCcccCCHHHHHHHHHHH
Confidence 14899999975 55678999999875211 10 1 1235778999999865 79999999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEe
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~ 240 (245)
||+.+|++|||||||++||+.++..+.++|+++.+ +.|||++|||++++..+|||+++|+ |++...
T Consensus 467 aL~~~p~llLLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tviivsHD~~~~~~~aDrvivl~-~~~~~~ 534 (590)
T PRK13409 467 CLSRDADLYLLDEPSAHLDVEQRLAVAKAIRRIAEEREATALVVDHDIYMIDYISDRLMVFE-GEPGKH 534 (590)
T ss_pred HHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEc-Ccceee
Confidence 99999999999999999999999999999999854 5899999999999999999999997 577654
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.3e-46 Score=383.86 Aligned_cols=208 Identities=23% Similarity=0.280 Sum_probs=174.4
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.|+++||+++|+++..++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+...+. ..+|
T Consensus 1234 ~I~f~nVsf~Y~~~~~~vL~~isl~I~~GekvaIVG~SGSGKSTL~~lL~rl~~p~~G~I~IdG~di~~i~~----~~lR 1309 (1495)
T PLN03232 1234 SIKFEDVHLRYRPGLPPVLHGLSFFVSPSEKVGVVGRTGAGKSSMLNALFRIVELEKGRIMIDDCDVAKFGL----TDLR 1309 (1495)
T ss_pred cEEEEEEEEEECCCCCcccccceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCCceEEECCEEhhhCCH----HHHH
Confidence 499999999996544579999999999999999999999999999999999999999999999999865432 2347
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHc-----------CCCCccCCCCCCCCChHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWV-----------GLDGTSLDKDPHSLSGGY 165 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~~LSgGq 165 (245)
++|+||||+|. + +..|+++|+..+. . .. ++++.++++.. |++.. ......+|||||
T Consensus 1310 ~~i~iVpQdp~-L-F~gTIr~NL~~~~-~--~s-------deei~~al~~a~l~~~I~~lp~GLdt~-v~e~G~~LSgGQ 1376 (1495)
T PLN03232 1310 RVLSIIPQSPV-L-FSGTVRFNIDPFS-E--HN-------DADLWEALERAHIKDVIDRNPFGLDAE-VSEGGENFSVGQ 1376 (1495)
T ss_pred hhcEEECCCCe-e-eCccHHHHcCCCC-C--CC-------HHHHHHHHHHcCCHHHHHhCcCCCCce-ecCCCCCCCHHH
Confidence 88999999984 4 4679999998652 1 11 11233334433 44432 455667899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 166 KRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 166 kqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
|||++|||||+++|++||||||||+||+++.+.+.+.|++..+++|+|+|+|+++.+.. ||+|++|++|++++.+.
T Consensus 1377 rQrlaLARALLr~~~ILILDEATSaLD~~Te~~Iq~~L~~~~~~~TvI~IAHRl~ti~~-~DrIlVL~~G~ivE~Gt 1452 (1495)
T PLN03232 1377 RQLLSLARALLRRSKILVLDEATASVDVRTDSLIQRTIREEFKSCTMLVIAHRLNTIID-CDKILVLSSGQVLEYDS 1452 (1495)
T ss_pred HHHHHHHHHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHHh-CCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999998778999999999998865 89999999999987653
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-46 Score=382.17 Aligned_cols=208 Identities=24% Similarity=0.308 Sum_probs=174.7
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.|+++||+++|.++..++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+...+. ..+|
T Consensus 1237 ~I~f~nVsf~Y~~~~~~VL~~is~~I~~GekVaIVGrSGSGKSTLl~lL~rl~~p~~G~I~IDG~dI~~i~l----~~LR 1312 (1622)
T PLN03130 1237 SIKFEDVVLRYRPELPPVLHGLSFEISPSEKVGIVGRTGAGKSSMLNALFRIVELERGRILIDGCDISKFGL----MDLR 1312 (1622)
T ss_pred cEEEEEEEEEeCCCCCceecceeEEEcCCCEEEEECCCCCCHHHHHHHHhCcCCCCCceEEECCEecccCCH----HHHH
Confidence 599999999996543479999999999999999999999999999999999999999999999999865432 2347
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHc-----------CCCCccCCCCCCCCChHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWV-----------GLDGTSLDKDPHSLSGGY 165 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~~LSgGq 165 (245)
++|++|||+|. ++..|+++|+..+. . .. ++.+.++++.. |++.. ......+|||||
T Consensus 1313 ~~IsiVpQdp~--LF~GTIreNLd~~~-~--~t-------deei~~Al~~a~l~~~I~~lp~GLdt~-Vge~G~nLSgGQ 1379 (1622)
T PLN03130 1313 KVLGIIPQAPV--LFSGTVRFNLDPFN-E--HN-------DADLWESLERAHLKDVIRRNSLGLDAE-VSEAGENFSVGQ 1379 (1622)
T ss_pred hccEEECCCCc--cccccHHHHhCcCC-C--CC-------HHHHHHHHHHcCcHHHHHhCccccCcc-ccCCCCCCCHHH
Confidence 88999999994 45679999998652 1 11 11233333333 44432 455667899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 166 KRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 166 kqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
|||++|||||+++|++||||||||+||+++.+.+.+.|++..+++|+|+|+|+++.+.. ||||++|++|++++.+.
T Consensus 1380 rQrlaLARALLr~p~ILILDEATSaLD~~Te~~Iq~~I~~~~~~~TvI~IAHRL~tI~~-~DrIlVLd~G~IvE~Gt 1455 (1622)
T PLN03130 1380 RQLLSLARALLRRSKILVLDEATAAVDVRTDALIQKTIREEFKSCTMLIIAHRLNTIID-CDRILVLDAGRVVEFDT 1455 (1622)
T ss_pred HHHHHHHHHHHcCCCEEEEECCCCCCCHHHHHHHHHHHHHHCCCCEEEEEeCChHHHHh-CCEEEEEECCEEEEeCC
Confidence 99999999999999999999999999999999999999998778999999999999865 89999999999987653
|
|
| >TIGR01194 cyc_pep_trnsptr cyclic peptide transporter | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-45 Score=349.50 Aligned_cols=206 Identities=22% Similarity=0.304 Sum_probs=169.6
Q ss_pred ceEEEEeEEEECCCC---ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGT---QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPE 92 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~---~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 92 (245)
..|+++||+|+|++. .+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|.++.....
T Consensus 336 ~~i~~~~v~f~y~~~~~~~~~~l~~vs~~i~~G~~~aivG~sGsGKSTl~~ll~g~~~p~~G~i~~~g~~i~~~~~---- 411 (555)
T TIGR01194 336 DSIELKDVHMNPKAPEGSEGFALGPIDLRIAQGDIVFIVGENGCGKSTLAKLFCGLYIPQEGEILLDGAAVSADSR---- 411 (555)
T ss_pred ceEEEEEEEEEeCCCCCCcCceeccceEEEcCCcEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH----
Confidence 359999999999752 2359999999999999999999999999999999999999999999999998864322
Q ss_pred CCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCC------CCCCChHHH
Q 035832 93 PLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKD------PHSLSGGYK 166 (245)
Q Consensus 93 ~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~------~~~LSgGqk 166 (245)
..+++.++|++|++. ++..|+.+|.. + ...++++.++++.+++.+. .++. ...||||||
T Consensus 412 ~~~~~~i~~v~q~~~--lf~~ti~~n~~---~---------~~~~~~~~~~~~~~~l~~~-~~~lp~g~~t~~~LSgGq~ 476 (555)
T TIGR01194 412 DDYRDLFSAIFADFH--LFDDLIGPDEG---E---------HASLDNAQQYLQRLEIADK-VKIEDGGFSTTTALSTGQQ 476 (555)
T ss_pred HHHHhhCcEEccChh--hhhhhhhcccc---c---------chhHHHHHHHHHHcCCchh-hcccccccCCcccCCHHHH
Confidence 123577999999983 45678888731 1 0123346678888888764 3332 357999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH-Hhh-cCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 167 RRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLK-HLK-KELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 167 qrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~-~l~-~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||++||||++.+|+++||||||++||+.+.+.+.+.+. .++ +++|+|++||+++.+ ..||+|++|++|+++.+-
T Consensus 477 qRlalaRall~~~~ililDE~ts~LD~~~~~~i~~~l~~~~~~~~~tiiiisH~~~~~-~~~d~i~~l~~G~i~~~~ 552 (555)
T TIGR01194 477 KRLALICAWLEDRPILLFDEWAADQDPAFKRFFYEELLPDLKRQGKTIIIISHDDQYF-ELADQIIKLAAGCIVKDT 552 (555)
T ss_pred HHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeccHHHH-HhCCEEEEEECCEEEEec
Confidence 99999999999999999999999999999999988654 454 469999999999865 589999999999998653
|
This model describes cyclic peptide transporter in bacteria. Bacteria have elaborate pathways for the production of toxins and secondary metabolites. Many such compounds, including syringomycin and pyoverdine are synthesized on non-ribosomal templates consisting of a multienzyme complex. On several occasions the proteins of the complex and transporter protein are present on the same operon. Often times these compounds cross the biological membrane by specific transporters. Syringomycin is an amphipathic, cylclic lipodepsipeptide when inserted into host causes formation of channels, permeable to variety of cations. On the other hand, pyoverdine is a cyclic octa-peptidyl dihydroxyquinoline, which is efficient in sequestering iron for uptake. |
| >PRK10636 putative ABC transporter ATP-binding protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-45 Score=351.57 Aligned_cols=202 Identities=25% Similarity=0.319 Sum_probs=162.1
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
||+++||+++|++ +++|+|+||+|++|+++||+||||||||||||+|+|+++|++|+|.++|.
T Consensus 1 ~i~i~nls~~~g~--~~~l~~vs~~i~~Ge~v~LvG~NGsGKSTLLkiL~G~~~pd~G~I~~~~~--------------- 63 (638)
T PRK10636 1 MIVFSSLQIRRGV--RVLLDNATATINPGQKVGLVGKNGCGKSTLLALLKNEISADGGSYTFPGN--------------- 63 (638)
T ss_pred CEEEEEEEEEeCC--ceeecCcEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEecCC---------------
Confidence 5899999999974 46999999999999999999999999999999999999999999999753
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCC--------------CCC-Cc----hh-H----HHHHHHHHHHHHHHcCCCCc
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWP--------------RQS-GS----IQ-L----KEYLALNLQRAINWVGLDGT 152 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~--------------~~~-~~----~~-~----~~~~~~~~~~~l~~~~l~~~ 152 (245)
..++|++|++. .+ ..++.+++.-... ... .. .. . ......++.++++.+|+...
T Consensus 64 ~~i~~~~q~~~-~~-~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~lgl~~~ 141 (638)
T PRK10636 64 WQLAWVNQETP-AL-PQPALEYVIDGDREYRQLEAQLHDANERNDGHAIATIHGKLDAIDAWTIRSRAASLLHGLGFSNE 141 (638)
T ss_pred CEEEEEecCCC-CC-CCCHHHHHHHhhHHHHHHHHHHHHHhccCCHHHHHHHHHHHHhcCCcchHHHHHHHHHhCCCCch
Confidence 13677777542 11 2344333321100 000 00 00 0 01123467889999999732
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEE
Q 035832 153 SLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRM 232 (245)
Q Consensus 153 ~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l 232 (245)
.+++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|+++ +.|||+||||++++..+||++++|
T Consensus 142 ~~~~~~~~LSgGerqRv~LA~aL~~~P~lLLLDEPtn~LD~~~~~~L~~~L~~~--~~tviivsHd~~~l~~~~d~i~~L 219 (638)
T PRK10636 142 QLERPVSDFSGGWRMRLNLAQALICRSDLLLLDEPTNHLDLDAVIWLEKWLKSY--QGTLILISHDRDFLDPIVDKIIHI 219 (638)
T ss_pred hhcCchhhcCHHHHHHHHHHHHHccCCCEEEEcCCCCcCCHHHHHHHHHHHHhC--CCeEEEEeCCHHHHHHhcCEEEEE
Confidence 368999999999999999999999999999999999999999999999999886 469999999999999999999999
Q ss_pred eCCeEEE
Q 035832 233 DMGGFLV 239 (245)
Q Consensus 233 ~~G~i~~ 239 (245)
++|+++.
T Consensus 220 ~~G~i~~ 226 (638)
T PRK10636 220 EQQSLFE 226 (638)
T ss_pred eCCEEEE
Confidence 9999964
|
|
| >cd03236 ABC_RNaseL_inhibitor_domain1 The ATPase domain 1 of RNase L inhibitor | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-45 Score=316.71 Aligned_cols=203 Identities=27% Similarity=0.276 Sum_probs=165.0
Q ss_pred EeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEE-----------EcCccCCCCCCC
Q 035832 21 RDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN-----------IRGYNNDGEPNN 89 (245)
Q Consensus 21 ~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~-----------~~g~~~~~~~~~ 89 (245)
.+++++|+++ ..+|+|+|+ +++||+++|+||||||||||+++|+|+++|++|+|+ ++|+++......
T Consensus 4 ~~~~~~y~~~-~~~l~~i~~-i~~Ge~~~IvG~nGsGKSTLlk~l~Gl~~p~~G~I~~~~~~~~~~~~~~g~~~~~~~~~ 81 (255)
T cd03236 4 DEPVHRYGPN-SFKLHRLPV-PREGQVLGLVGPNGIGKSTALKILAGKLKPNLGKFDDPPDWDEILDEFRGSELQNYFTK 81 (255)
T ss_pred cCcceeecCc-chhhhcCCC-CCCCCEEEEECCCCCCHHHHHHHHhCCcCCCCceEeeccccchhhhhccCchhhhhhHH
Confidence 4789999643 358999995 999999999999999999999999999999999996 677765322110
Q ss_pred CCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHH
Q 035832 90 SPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRL 169 (245)
Q Consensus 90 ~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv 169 (245)
.. .....++|++|++. +++ .++.+++.+... .......+.++++.+|+.+. .++.+.+||||||||+
T Consensus 82 ~~--~~~~~i~~~~~~~~-~~~-~~~~~~i~~~l~--------~~~~~~~~~~~l~~~gl~~~-~~~~~~~LS~G~~qrv 148 (255)
T cd03236 82 LL--EGDVKVIVKPQYVD-LIP-KAVKGKVGELLK--------KKDERGKLDELVDQLELRHV-LDRNIDQLSGGELQRV 148 (255)
T ss_pred hh--hcccceeeecchhc-cCc-hHHHHHHHHHhc--------hhHHHHHHHHHHHHcCCchh-hcCChhhCCHHHHHHH
Confidence 00 00124889999874 444 477777765321 11123456788999999875 6899999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEE
Q 035832 170 ALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLV 239 (245)
Q Consensus 170 ~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~ 239 (245)
+|||||+.+|+++||||||++||+.+++.+.++|+++++ ++|||++|||++++..+||++++|+ |++.+
T Consensus 149 ~laral~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~~~~tIIiiSHd~~~~~~~ad~i~~l~-~~~~~ 218 (255)
T cd03236 149 AIAAALARDADFYFFDEPSSYLDIKQRLNAARLIRELAEDDNYVLVVEHDLAVLDYLSDYIHCLY-GEPGA 218 (255)
T ss_pred HHHHHHHhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEECCHHHHHHhCCEEEEEC-CCCCc
Confidence 999999999999999999999999999999999999875 6899999999999999999999996 66654
|
The ABC ATPase, RNase L inhibitor (RLI), is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI s are not transport proteins and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLIs have an N-terminal Fe-S domain and two nucleotide binding domains which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-45 Score=288.09 Aligned_cols=144 Identities=34% Similarity=0.478 Sum_probs=134.8
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++|++++|++ .++++++||++++||+++|+||||||||||+++|+|+++|++|+|+++|. .
T Consensus 1 l~~~~l~~~~~~--~~~l~~~~~~~~~Ge~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~---------------~ 63 (144)
T cd03221 1 IELENLSKTYGG--KLLLKDISLTINPGDRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGST---------------V 63 (144)
T ss_pred CEEEEEEEEECC--ceEEEeeEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCe---------------E
Confidence 478999999964 36999999999999999999999999999999999999999999999762 3
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ 177 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~ 177 (245)
.++|+|| ||+||+||++|||||+.
T Consensus 64 ~i~~~~~--------------------------------------------------------lS~G~~~rv~laral~~ 87 (144)
T cd03221 64 KIGYFEQ--------------------------------------------------------LSGGEKMRLALAKLLLE 87 (144)
T ss_pred EEEEEcc--------------------------------------------------------CCHHHHHHHHHHHHHhc
Confidence 5889888 99999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCe
Q 035832 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGG 236 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~ 236 (245)
+|+++||||||++||+.++..+.+.|+++ +.|+|++||+++++..+||++++|++|+
T Consensus 88 ~p~illlDEP~~~LD~~~~~~l~~~l~~~--~~til~~th~~~~~~~~~d~v~~l~~g~ 144 (144)
T cd03221 88 NPNLLLLDEPTNHLDLESIEALEEALKEY--PGTVILVSHDRYFLDQVATKIIELEDGK 144 (144)
T ss_pred CCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEeCCC
Confidence 99999999999999999999999999987 3699999999999999999999999985
|
EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions. |
| >COG1101 PhnK ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-46 Score=303.26 Aligned_cols=220 Identities=25% Similarity=0.360 Sum_probs=180.7
Q ss_pred eEEEEeEEEECCCC---ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGT---QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 17 ~l~~~~l~~~y~~~---~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
|+.+.|+.+.|..+ .+++|+++||+|.+|+++.|+|.||||||||+++|+|-++|++|+|.++|.++++.+..
T Consensus 1 Mi~~~~~~~~f~~g~~~ek~~l~~~sL~I~~g~FvtViGsNGAGKSTlln~iaG~l~~t~G~I~Idg~dVtk~~~~---- 76 (263)
T COG1101 1 MISLSNATKTFFKGTPLEKRALNGLSLEIAEGDFVTVIGSNGAGKSTLLNAIAGDLKPTSGQILIDGVDVTKKSVA---- 76 (263)
T ss_pred CcccccceeeecCCChhHHHHHhcCceeecCCceEEEEcCCCccHHHHHHHhhCccccCCceEEECceecccCCHH----
Confidence 56788888766432 46799999999999999999999999999999999999999999999999999876532
Q ss_pred CCCCcEEEEecCCCC-CCCcccHHHHHHhcCCCCC-CchhH--HHHHHHHHHHHHHHc--CCCCccCCCCCCCCChHHHH
Q 035832 94 LPPEKVGIVFQFPER-YFVADNVLDEVIFGWPRQS-GSIQL--KEYLALNLQRAINWV--GLDGTSLDKDPHSLSGGYKR 167 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~-~~~~~tv~e~l~~~~~~~~-~~~~~--~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkq 167 (245)
.+...++-|||+|.. .++.+|+.||++++..+.. +.... .........+.++.+ |+++. ++.++.-|||||||
T Consensus 77 ~RA~~larVfQdp~~gt~~~lTieENl~la~~Rg~~rgl~~~ln~~~~~~f~~~l~~l~lgLenr-L~~~iglLSGGQRQ 155 (263)
T COG1101 77 KRANLLARVFQDPLAGTAPELTIEENLALAESRGKKRGLSSALNERRRSSFRERLARLGLGLENR-LSDRIGLLSGGQRQ 155 (263)
T ss_pred HHhhHHHHHhcchhhCCcccccHHHHHHHHHhcCcccccchhhhHHHHHHHHHHHhhcccchhhh-hcChhhhccchHHH
Confidence 234678899999953 4678999999998633211 11101 111222334445554 66765 78999999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 168 RLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 168 rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
-++|++|.++.|++|+|||-|++|||.+.+.++++-.++-+ +.|.+||||+|+.+..|.+|.++|++|+|+.+-
T Consensus 156 alsL~MAtl~~pkiLLLDEHTAALDPkta~~vm~lT~kiV~~~klTtlMVTHnm~~Al~yG~RlImLh~G~IvlDv 231 (263)
T COG1101 156 ALSLLMATLHPPKILLLDEHTAALDPKTAEFVMELTAKIVEEHKLTTLMVTHNMEDALDYGNRLIMLHSGKIVLDV 231 (263)
T ss_pred HHHHHHHhcCCCcEEEecchhhcCCcchHHHHHHHHHHHHHhcCCceEEEeccHHHHHhhCCeEEEEeCCeEEEEc
Confidence 99999999999999999999999999999999999998853 479999999999999999999999999999763
|
|
| >KOG0055 consensus Multidrug/pheromone exporter, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.2e-45 Score=359.99 Aligned_cols=217 Identities=26% Similarity=0.385 Sum_probs=179.7
Q ss_pred eEEEEeEEEECCCC-ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGT-QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 17 ~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
-|+++||+|.||.+ +.++|+|+||++++|+.+||+|||||||||.+.+|-.++.|++|.|.+||+|+.+.+. .++
T Consensus 987 ~I~~~~V~F~YPsRP~~~Il~~l~l~i~~GqTvALVG~SGsGKSTvI~LLeRfYdp~~G~V~IDg~dik~lnl----~~L 1062 (1228)
T KOG0055|consen 987 DIEFRNVSFAYPTRPDVPVLNNLSLSIRAGQTVALVGPSGSGKSTVISLLERFYDPDAGKVKIDGVDIKDLNL----KWL 1062 (1228)
T ss_pred EEEEeeeEeeCCCCCCchhhcCCcEEecCCCEEEEECCCCCCHHHHHHHHHHhcCCCCCeEEECCcccccCCH----HHH
Confidence 39999999999853 4579999999999999999999999999999999999999999999999999976543 346
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
|+++|.|.|+|. ++..|++||+.+|........-........+.+.+..+ |.+.. ...+..+||||||||+||||
T Consensus 1063 R~~i~lVsQEP~--LF~~TIrENI~YG~~~vs~~eIi~Aak~ANaH~FI~sLP~GyDT~-vGerG~QLSGGQKQRIAIAR 1139 (1228)
T KOG0055|consen 1063 RKQIGLVSQEPV--LFNGTIRENIAYGSEEVSEEEIIEAAKLANAHNFISSLPQGYDTR-VGERGVQLSGGQKQRIAIAR 1139 (1228)
T ss_pred HHhcceeccCch--hhcccHHHHHhccCCCCCHHHHHHHHHHhhhHHHHhcCcCcccCc-cCcccCcCCchHHHHHHHHH
Confidence 889999999994 45789999999983221100000111112233334333 45443 56778899999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|+++||++|||||.||+||.++.+.+.+.|.+...+.|.|+|.|.+..+. -||.|+|+++|++++++
T Consensus 1140 AilRnPkILLLDEATSALDseSErvVQeALd~a~~gRT~IvIAHRLSTIq-naD~I~Vi~~G~VvE~G 1206 (1228)
T KOG0055|consen 1140 AILRNPKILLLDEATSALDSESERVVQEALDRAMEGRTTIVIAHRLSTIQ-NADVIAVLKNGKVVEQG 1206 (1228)
T ss_pred HHHcCCCeeeeeccchhhhhhhHHHHHHHHHHhhcCCcEEEEecchhhhh-cCCEEEEEECCEEEecc
Confidence 99999999999999999999999999999999999999999999999875 69999999999998765
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.7e-45 Score=350.43 Aligned_cols=199 Identities=25% Similarity=0.346 Sum_probs=164.3
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
.++|+++|+++.|+++ ..+|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.+++
T Consensus 506 ~~~L~~~~ls~~y~~~-~~il~~vsl~i~~Ge~i~LvG~NGsGKSTLLk~L~Gll~p~~G~I~~~~-------------- 570 (718)
T PLN03073 506 PPIISFSDASFGYPGG-PLLFKNLNFGIDLDSRIAMVGPNGIGKSTILKLISGELQPSSGTVFRSA-------------- 570 (718)
T ss_pred CceEEEEeeEEEeCCC-CeeEeccEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCceEEECC--------------
Confidence 4689999999999642 3689999999999999999999999999999999999999999998853
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
+.++||++|++. ..+++.++..+......... ....+.++++.+++.....++++.+|||||||||+||||
T Consensus 571 -~~~igyv~Q~~~---~~l~~~~~~~~~~~~~~~~~-----~~~~i~~~L~~~gl~~~~~~~~~~~LSgGqkqRvaLAra 641 (718)
T PLN03073 571 -KVRMAVFSQHHV---DGLDLSSNPLLYMMRCFPGV-----PEQKLRAHLGSFGVTGNLALQPMYTLSGGQKSRVAFAKI 641 (718)
T ss_pred -ceeEEEEecccc---ccCCcchhHHHHHHHhcCCC-----CHHHHHHHHHHCCCChHHhcCCccccCHHHHHHHHHHHH
Confidence 236999999862 23344444322110000000 123567889999997433688999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEE
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLV 239 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~ 239 (245)
|+.+|++|||||||++||+.+++.+.+.|.+. +.|||+||||++++..+||++++|++|+++.
T Consensus 642 L~~~p~lLLLDEPT~~LD~~s~~~l~~~L~~~--~gtvIivSHd~~~i~~~~drv~~l~~G~i~~ 704 (718)
T PLN03073 642 TFKKPHILLLDEPSNHLDLDAVEALIQGLVLF--QGGVLMVSHDEHLISGSVDELWVVSEGKVTP 704 (718)
T ss_pred HhcCCCEEEEcCCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHhCCEEEEEECCEEEE
Confidence 99999999999999999999999999888775 3599999999999999999999999999974
|
|
| >PRK15177 Vi polysaccharide export ATP-binding protein VexC; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.2e-45 Score=306.99 Aligned_cols=184 Identities=20% Similarity=0.168 Sum_probs=149.2
Q ss_pred eeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEE-EcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCc
Q 035832 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN-IRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVA 112 (245)
Q Consensus 34 il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~-~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~ 112 (245)
+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|. ++|..+ .++ +.+ .+++.
T Consensus 2 vl~~vs~~i~~Ge~~~l~G~NGsGKSTLlk~i~Gl~~~~sG~i~~~~~~~~--------------~~~---~~~-~l~~~ 63 (213)
T PRK15177 2 VLDKTDFVMGYHEHIGILAAPGSGKTTLTRLLCGLDAPDEGDFIGLRGDAL--------------PLG---ANS-FILPG 63 (213)
T ss_pred eeeeeeEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCCCEEEecCcee--------------ccc---ccc-ccCCc
Confidence 79999999999999999999999999999999999999999997 655321 012 233 25567
Q ss_pred ccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 035832 113 DNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLD 192 (245)
Q Consensus 113 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD 192 (245)
+|+.||+.+........ .... ...+.+.++++.. .++++.+||+|||||++|||||+.+|+++||||||+++|
T Consensus 64 ltv~enl~~~~~~~~~~---~~~~---~~~~~~~~~l~~~-~~~~~~~lS~G~~qrv~la~al~~~p~llllDEP~~~lD 136 (213)
T PRK15177 64 LTGEENARMMASLYGLD---GDEF---SHFCYQLTQLEQC-YTDRVSEYSVTMKTHLAFAINLLLPCRLYIADGKLYTGD 136 (213)
T ss_pred CcHHHHHHHHHHHcCCC---HHHH---HHHHHHHhChhHH-hhchHhhcCHHHHHHHHHHHHHhcCCCEEEECCCCccCC
Confidence 89999998742211111 1111 1223455677764 688999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 193 WKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 193 ~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
+.+++.+++.+.+..++.++|++||+++++..+||++++|++|+++..+.
T Consensus 137 ~~~~~~~~~~l~~~~~~~~ii~vsH~~~~~~~~~d~i~~l~~G~i~~~~~ 186 (213)
T PRK15177 137 NATQLRMQAALACQLQQKGLIVLTHNPRLIKEHCHAFGVLLHGKITMCED 186 (213)
T ss_pred HHHHHHHHHHHHHHhhCCcEEEEECCHHHHHHhcCeeEEEECCeEEEeCC
Confidence 99999999988655445789999999999999999999999999987653
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-45 Score=377.42 Aligned_cols=209 Identities=22% Similarity=0.250 Sum_probs=174.5
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.|+++||+++|+++..++|+||||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+...+. ..+|
T Consensus 1308 ~I~f~nVsf~Y~~~~~~vL~~vsf~I~~GekVaIVGrTGSGKSTLl~lLlrl~~p~~G~I~IDG~di~~i~l----~~LR 1383 (1560)
T PTZ00243 1308 SLVFEGVQMRYREGLPLVLRGVSFRIAPREKVGIVGRTGSGKSTLLLTFMRMVEVCGGEIRVNGREIGAYGL----RELR 1383 (1560)
T ss_pred eEEEEEEEEEeCCCCCceeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEEcccCCH----HHHH
Confidence 499999999997644469999999999999999999999999999999999999999999999999865432 2346
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCc----------cCCCCCCCCChHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGT----------SLDKDPHSLSGGYK 166 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqk 166 (245)
++||||||+|. ++..|+++|+... .. .. ++.+.++++.+++.+. .......+||||||
T Consensus 1384 ~~I~iVpQdp~--LF~gTIreNIdp~-~~--~s-------deeI~~Al~~a~l~~~I~~lp~Gldt~vge~G~nLSgGQr 1451 (1560)
T PTZ00243 1384 RQFSMIPQDPV--LFDGTVRQNVDPF-LE--AS-------SAEVWAALELVGLRERVASESEGIDSRVLEGGSNYSVGQR 1451 (1560)
T ss_pred hcceEECCCCc--cccccHHHHhCcc-cC--CC-------HHHHHHHHHHCCChHHHhhCcccccccccCCcCcCCHHHH
Confidence 88999999994 4567999999643 11 11 1235555666555431 12344568999999
Q ss_pred HHHHHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 167 RRLALAIQLVQV-PDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 167 qrv~iAral~~~-p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
||++|||||+++ |++||||||||+||+++.+.+.+.|++..+++|+|+|+|+++.+. .||+|++|++|+++..+.
T Consensus 1452 QrLaLARALL~~~~~ILlLDEATSaLD~~te~~Iq~~L~~~~~~~TvI~IAHRl~ti~-~~DrIlVLd~G~VvE~Gt 1527 (1560)
T PTZ00243 1452 QLMCMARALLKKGSGFILMDEATANIDPALDRQIQATVMSAFSAYTVITIAHRLHTVA-QYDKIIVMDHGAVAEMGS 1527 (1560)
T ss_pred HHHHHHHHHhcCCCCEEEEeCCCccCCHHHHHHHHHHHHHHCCCCEEEEEeccHHHHH-hCCEEEEEECCEEEEECC
Confidence 999999999995 899999999999999999999999998877899999999999875 689999999999987543
|
|
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-45 Score=374.71 Aligned_cols=208 Identities=21% Similarity=0.198 Sum_probs=173.5
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.|+++||+++|+.+..++|+|+||+|++||.+||+|+||||||||+++|.|+++|++|+|.+||.|+...+. ..+|
T Consensus 1284 ~I~f~nVsf~Y~~~~~~vL~~is~~I~~GekiaIVGrTGsGKSTL~~lL~rl~~~~~G~I~IdG~dI~~i~~----~~LR 1359 (1522)
T TIGR00957 1284 RVEFRNYCLRYREDLDLVLRHINVTIHGGEKVGIVGRTGAGKSSLTLGLFRINESAEGEIIIDGLNIAKIGL----HDLR 1359 (1522)
T ss_pred cEEEEEEEEEeCCCCcccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCccCCCCeEEECCEEccccCH----HHHH
Confidence 499999999997544479999999999999999999999999999999999999999999999999865432 2357
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHc-----------CCCCccCCCCCCCCChHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWV-----------GLDGTSLDKDPHSLSGGY 165 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~~LSgGq 165 (245)
++|++|||+|. ++..|+++|+... .. .. ++.+.++++.+ |++.. .......|||||
T Consensus 1360 ~~i~iVpQdp~--LF~gTIr~NLdp~-~~--~s-------deei~~al~~a~l~~~I~~lp~GLdt~-v~e~G~~LSgGQ 1426 (1522)
T TIGR00957 1360 FKITIIPQDPV--LFSGSLRMNLDPF-SQ--YS-------DEEVWWALELAHLKTFVSALPDKLDHE-CAEGGENLSVGQ 1426 (1522)
T ss_pred hcCeEECCCCc--ccCccHHHHcCcc-cC--CC-------HHHHHHHHHHcCcHHHHhhCccCCCce-ecCCCCcCCHHH
Confidence 88999999994 4467999999732 11 11 11233344443 34432 345567899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 166 KRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 166 kqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
|||++|||||+.+|++||||||||+||+++.+.+.+.|++..+++|+|+|+|+++.+. .||||++|++|++++.+.
T Consensus 1427 rQrl~LARALLr~~~ILiLDEaTSalD~~Te~~Iq~~l~~~~~~~TvI~IAHRl~ti~-~~DrIlVld~G~IvE~G~ 1502 (1522)
T TIGR00957 1427 RQLVCLARALLRKTKILVLDEATAAVDLETDNLIQSTIRTQFEDCTVLTIAHRLNTIM-DYTRVIVLDKGEVAEFGA 1502 (1522)
T ss_pred HHHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999998877899999999999876 589999999999987653
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >PRK11147 ABC transporter ATPase component; Reviewed | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.8e-44 Score=343.42 Aligned_cols=202 Identities=27% Similarity=0.347 Sum_probs=160.3
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
+||+++||+++|++ +++|+|+||+|++|++++|+||||||||||||+|+|+++|++|+|.++|.
T Consensus 2 ~~l~i~~ls~~~~~--~~il~~is~~i~~Ge~v~LvG~NGsGKSTLLriiaG~~~p~~G~I~~~~~-------------- 65 (635)
T PRK11147 2 SLISIHGAWLSFSD--APLLDNAELHIEDNERVCLVGRNGAGKSTLMKILNGEVLLDDGRIIYEQD-------------- 65 (635)
T ss_pred cEEEEeeEEEEeCC--ceeEeCcEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCeEEEeCCC--------------
Confidence 47999999999974 46999999999999999999999999999999999999999999998752
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcC-----------------CCCCCc--h----h----H----HHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGW-----------------PRQSGS--I----Q----L----KEYLALNLQRAI 144 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~-----------------~~~~~~--~----~----~----~~~~~~~~~~~l 144 (245)
..+++++|.+. .....++.+++..+. ...... . . . ......++.+++
T Consensus 66 -~~~~~l~q~~~-~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~l 143 (635)
T PRK11147 66 -LIVARLQQDPP-RNVEGTVYDFVAEGIEEQAEYLKRYHDISHLVETDPSEKNLNELAKLQEQLDHHNLWQLENRINEVL 143 (635)
T ss_pred -CEEEEeccCCC-CCCCCCHHHHHHHhhHHHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHHHhcCcccHHHHHHHHH
Confidence 12456665542 111223333321100 000000 0 0 0 001234678889
Q ss_pred HHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHh
Q 035832 145 NWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAA 224 (245)
Q Consensus 145 ~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~ 224 (245)
+.+|+. .++++.+|||||||||+|||||+.+|++|||||||++||+.+++.+.++|+++. .|||+||||.+++..
T Consensus 144 ~~lgl~---~~~~~~~LSgGekqRv~LAraL~~~P~lLLLDEPt~~LD~~~~~~L~~~L~~~~--~tvlivsHd~~~l~~ 218 (635)
T PRK11147 144 AQLGLD---PDAALSSLSGGWLRKAALGRALVSNPDVLLLDEPTNHLDIETIEWLEGFLKTFQ--GSIIFISHDRSFIRN 218 (635)
T ss_pred HhCCCC---CCCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCCccCHHHHHHHHHHHHhCC--CEEEEEeCCHHHHHH
Confidence 999996 378999999999999999999999999999999999999999999999999884 599999999999999
Q ss_pred hccEEEEEeCCeEEEe
Q 035832 225 LVDHSWRMDMGGFLVE 240 (245)
Q Consensus 225 ~~d~v~~l~~G~i~~~ 240 (245)
+||++++|++|+++..
T Consensus 219 ~~d~i~~L~~G~i~~~ 234 (635)
T PRK11147 219 MATRIVDLDRGKLVSY 234 (635)
T ss_pred hcCeEEEEECCEEEEe
Confidence 9999999999999753
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-44 Score=367.19 Aligned_cols=217 Identities=24% Similarity=0.283 Sum_probs=181.3
Q ss_pred ceEEEEeEEEECC--CCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC---CCcceEEEcCccCCCCCCCC
Q 035832 16 SCLEVRDVSYRPP--GTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK---PTSGSINIRGYNNDGEPNNS 90 (245)
Q Consensus 16 ~~l~~~~l~~~y~--~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~---p~~G~i~~~g~~~~~~~~~~ 90 (245)
.+++++||++.|+ ++.+.+|+|||+++++||+++|+|||||||||||++|+|+.+ |++|+|.++|+++..
T Consensus 758 ~~l~~~nl~~~~~~~~~~~~iL~~vs~~i~~Ge~~aI~G~sGaGKSTLL~~Lag~~~~g~~~~G~I~i~G~~~~~----- 832 (1394)
T TIGR00956 758 DIFHWRNLTYEVKIKKEKRVILNNVDGWVKPGTLTALMGASGAGKTTLLNVLAERVTTGVITGGDRLVNGRPLDS----- 832 (1394)
T ss_pred ceEEEEeeEEEecCCCCCcEeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCh-----
Confidence 4689999999985 223579999999999999999999999999999999999997 788999999987631
Q ss_pred CCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCC----CCChHHH
Q 035832 91 PEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPH----SLSGGYK 166 (245)
Q Consensus 91 ~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~----~LSgGqk 166 (245)
..++.+|||+|++. +++..||+||+.+.............+..++++++++.+++.+. +++.++ +||||||
T Consensus 833 ---~~~~~i~yv~Q~~~-~~~~~Tv~E~L~~~a~l~~~~~~~~~~~~~~v~~~l~~l~L~~~-~d~~v~~~~~~LSgGqr 907 (1394)
T TIGR00956 833 ---SFQRSIGYVQQQDL-HLPTSTVRESLRFSAYLRQPKSVSKSEKMEYVEEVIKLLEMESY-ADAVVGVPGEGLNVEQR 907 (1394)
T ss_pred ---hhhcceeeeccccc-CCCCCCHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHcCChhh-CCCeeCCCCCCCCHHHh
Confidence 13567999999974 66789999999986321110001122334568899999999875 688777 7999999
Q ss_pred HHHHHHHHHhhCCC-EEEEeCCCCCCCHHHHHHHHHHHHHhh-cCceEEEEecChhH-HHhhccEEEEEeCC-eEEEecc
Q 035832 167 RRLALAIQLVQVPD-LLILDEPLAGLDWKARADVVKLLKHLK-KELTILVVSHDLKE-MAALVDHSWRMDMG-GFLVEQR 242 (245)
Q Consensus 167 qrv~iAral~~~p~-llllDEPts~LD~~~~~~i~~~l~~l~-~~~tiii~tHd~~~-~~~~~d~v~~l~~G-~i~~~~~ 242 (245)
|||+||+||+.+|+ +|+|||||+|||+.++..+++.|++++ +++|||++||+++. +...||++++|++| +++..+.
T Consensus 908 qRl~Ia~aL~~~P~~iLlLDEPTsgLD~~~~~~i~~~L~~la~~g~tvI~t~H~~~~~~~~~~D~vl~L~~GG~iv~~G~ 987 (1394)
T TIGR00956 908 KRLTIGVELVAKPKLLLFLDEPTSGLDSQTAWSICKLMRKLADHGQAILCTIHQPSAILFEEFDRLLLLQKGGQTVYFGD 987 (1394)
T ss_pred hHHHHHHHHHcCCCeEEEEcCCCCCCCHHHHHHHHHHHHHHHHcCCEEEEEecCCCHHHHHhcCEEEEEcCCCEEEEECC
Confidence 99999999999997 999999999999999999999999996 46899999999986 45789999999997 8887654
|
|
| >PTZ00265 multidrug resistance protein (mdr1); Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.8e-44 Score=369.85 Aligned_cols=213 Identities=23% Similarity=0.355 Sum_probs=170.7
Q ss_pred eEEEEeEEEECCCC-ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEE-cCccCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGT-QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINI-RGYNNDGEPNNSPEPL 94 (245)
Q Consensus 17 ~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~-~g~~~~~~~~~~~~~~ 94 (245)
.|+++||+|+|++. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|++ +|.++...+. .+
T Consensus 382 ~I~~~nVsf~Y~~~~~~~vL~~isl~i~~Ge~vaIvG~SGsGKSTLl~lL~gl~~p~~G~I~i~~g~~i~~~~~----~~ 457 (1466)
T PTZ00265 382 KIQFKNVRFHYDTRKDVEIYKDLNFTLTEGKTYAFVGESGCGKSTILKLIERLYDPTEGDIIINDSHNLKDINL----KW 457 (1466)
T ss_pred cEEEEEEEEEcCCCCCCceeccceEEEcCCCEEEEECCCCCCHHHHHHHHHHhccCCCCeEEEeCCcchhhCCH----HH
Confidence 59999999999753 246999999999999999999999999999999999999999999999 4677643221 23
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCC--------ch------------------------------hH----
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSG--------SI------------------------------QL---- 132 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~--------~~------------------------------~~---- 132 (245)
++++||||+|+|. +| ..|++||+.++...... .. ..
T Consensus 458 lr~~Ig~V~Q~~~-LF-~~TI~eNI~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 535 (1466)
T PTZ00265 458 WRSKIGVVSQDPL-LF-SNSIKNNIKYSLYSLKDLEALSNYYNEDGNDSQENKNKRNSCRAKCAGDLNDMSNTTDSNELI 535 (1466)
T ss_pred HHHhccEeccccc-ch-hccHHHHHHhcCCCccccchhccccccccccccccccccccccccccchhhhcccccchhhhh
Confidence 4678999999984 44 57999999987321000 00 00
Q ss_pred ------HHHHHHHHHHHHHHcCCCCc----------cCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH
Q 035832 133 ------KEYLALNLQRAINWVGLDGT----------SLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKAR 196 (245)
Q Consensus 133 ------~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~ 196 (245)
.....+.+.++++.+++.+. ..++.+.+||||||||++|||||+.+|++|||||||++||+.+.
T Consensus 536 ~~~~~~~~~~~~~v~~a~~~~~l~~~i~~lp~g~dT~vg~~g~~LSGGQkQRiaIARAll~~P~ILlLDEpTSaLD~~se 615 (1466)
T PTZ00265 536 EMRKNYQTIKDSEVVDVSKKVLIHDFVSALPDKYETLVGSNASKLSGGQKQRISIARAIIRNPKILILDEATSSLDNKSE 615 (1466)
T ss_pred hcccccccCCHHHHHHHHHHhCcHHHHHhCccccCceeCCCCCcCCHHHHHHHHHHHHHhcCCCEEEEeCcccccCHHHH
Confidence 00112345666666665432 13567889999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCe
Q 035832 197 ADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGG 236 (245)
Q Consensus 197 ~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~ 236 (245)
+.+.+.|+++.+ ++|+|+|||+++.+ ..||+|++|++|+
T Consensus 616 ~~i~~~L~~~~~~~g~TvIiIsHrls~i-~~aD~Iivl~~g~ 656 (1466)
T PTZ00265 616 YLVQKTINNLKGNENRITIIIAHRLSTI-RYANTIFVLSNRE 656 (1466)
T ss_pred HHHHHHHHHHhhcCCCEEEEEeCCHHHH-HhCCEEEEEeCCc
Confidence 999999999863 68999999999987 5899999999873
|
|
| >COG0396 sufC Cysteine desulfurase activator ATPase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-43 Score=293.12 Aligned_cols=223 Identities=25% Similarity=0.330 Sum_probs=187.5
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCC--CCCcceEEEcCccCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLS--KPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~--~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
+||+++||+++..+. +.+|++|||+|++||+.+|+||||||||||.++|+|.- ++++|+|.++|+++...+..++
T Consensus 2 ~~L~I~dLhv~v~~~-keILkgvnL~v~~GEvhaiMGPNGsGKSTLa~~i~G~p~Y~Vt~G~I~~~GedI~~l~~~ER-- 78 (251)
T COG0396 2 MMLEIKDLHVEVEGK-KEILKGVNLTVKEGEVHAIMGPNGSGKSTLAYTIMGHPKYEVTEGEILFDGEDILELSPDER-- 78 (251)
T ss_pred ceeEEeeeEEEecCc-hhhhcCcceeEcCCcEEEEECCCCCCHHHHHHHHhCCCCceEecceEEECCcccccCCHhHH--
Confidence 579999999998652 47999999999999999999999999999999999996 6789999999999987664432
Q ss_pred CCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCC-CCChHHHHHHHHH
Q 035832 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPH-SLSGGYKRRLALA 172 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~LSgGqkqrv~iA 172 (245)
.+..+.+.||+|. -++..++.+.+..+............+....+++.++.+++++..++|+++ .+|||||+|..|+
T Consensus 79 -Ar~GifLafQ~P~-ei~GV~~~~fLr~a~n~~~~~~~~~~~~~~~~~e~~~~l~~~~~~l~R~vN~GFSGGEkKR~Eil 156 (251)
T COG0396 79 -ARAGIFLAFQYPV-EIPGVTNSDFLRAAMNARRGARGILPEFIKELKEKAELLGLDEEFLERYVNEGFSGGEKKRNEIL 156 (251)
T ss_pred -HhcCCEEeecCCc-cCCCeeHHHHHHHHHHhhhccccccHHHHHHHHHHHHHcCCCHHHhhcccCCCcCcchHHHHHHH
Confidence 3567999999995 678889988887653211111000123455688899999999866899887 6999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhh-ccEEEEEeCCeEEEeccC
Q 035832 173 IQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAAL-VDHSWRMDMGGFLVEQRI 243 (245)
Q Consensus 173 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~-~d~v~~l~~G~i~~~~~~ 243 (245)
.+++.+|++.|||||-||||..+.+.+.+.+..+++ +.++++|||.-+.+..+ .|+|.+|.+|+|+.++++
T Consensus 157 Q~~~lePkl~ILDE~DSGLDIdalk~V~~~i~~lr~~~~~~liITHy~rll~~i~pD~vhvl~~GrIv~sG~~ 229 (251)
T COG0396 157 QLLLLEPKLAILDEPDSGLDIDALKIVAEGINALREEGRGVLIITHYQRLLDYIKPDKVHVLYDGRIVKSGDP 229 (251)
T ss_pred HHHhcCCCEEEecCCCcCccHHHHHHHHHHHHHHhcCCCeEEEEecHHHHHhhcCCCEEEEEECCEEEecCCH
Confidence 999999999999999999999999999999999975 68999999998866544 399999999999998764
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-44 Score=369.88 Aligned_cols=208 Identities=22% Similarity=0.226 Sum_probs=173.3
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.|+++||+++|+.+..++|+|+||+|++||.+||+|+||||||||+++|+|+++ ++|+|.+||.++...+. ..+|
T Consensus 1217 ~I~f~nVs~~Y~~~~~~vL~~is~~I~~GekvaIvGrSGsGKSTLl~lL~rl~~-~~G~I~IdG~di~~i~~----~~lR 1291 (1490)
T TIGR01271 1217 QMDVQGLTAKYTEAGRAVLQDLSFSVEGGQRVGLLGRTGSGKSTLLSALLRLLS-TEGEIQIDGVSWNSVTL----QTWR 1291 (1490)
T ss_pred eEEEEEEEEEeCCCCcceeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhhhcC-CCcEEEECCEEcccCCH----HHHH
Confidence 599999999997544679999999999999999999999999999999999997 79999999999865432 2346
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCc----------cCCCCCCCCChHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGT----------SLDKDPHSLSGGYK 166 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqk 166 (245)
++++||||+|. ++..|+++|+... . .. .++.+.++++.+++.+. ........||||||
T Consensus 1292 ~~is~IpQdp~--LF~GTIR~NLdp~-~--~~-------tdeei~~aL~~~~L~~~i~~lp~GLdt~v~e~G~nLSgGQr 1359 (1490)
T TIGR01271 1292 KAFGVIPQKVF--IFSGTFRKNLDPY-E--QW-------SDEEIWKVAEEVGLKSVIEQFPDKLDFVLVDGGYVLSNGHK 1359 (1490)
T ss_pred hceEEEeCCCc--cCccCHHHHhCcc-c--CC-------CHHHHHHHHHHCCCHHHHHhCccccccccccCCCcCCHHHH
Confidence 88999999994 4567999999642 1 11 12235556666655321 12334457999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 167 RRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 167 qrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
||++|||||+.+|+|||||||||+||+.+.+.+.+.|++..+++|||+|||+++.+. .||+|++|++|+++..+.
T Consensus 1360 QrL~LARALLr~~~ILlLDEaTS~lD~~Te~~I~~~L~~~~~~~TvI~IaHRl~ti~-~~DrIlvL~~G~ivE~g~ 1434 (1490)
T TIGR01271 1360 QLMCLARSILSKAKILLLDEPSAHLDPVTLQIIRKTLKQSFSNCTVILSEHRVEALL-ECQQFLVIEGSSVKQYDS 1434 (1490)
T ss_pred HHHHHHHHHhCCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEEEeCC
Confidence 999999999999999999999999999999999999999877899999999999876 489999999999986543
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >TIGR00955 3a01204 The Eye Pigment Precursor Transporter (EPP) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.5e-44 Score=341.88 Aligned_cols=203 Identities=28% Similarity=0.291 Sum_probs=172.0
Q ss_pred ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---cceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCC
Q 035832 31 QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPT---SGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPE 107 (245)
Q Consensus 31 ~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~ 107 (245)
.+++|+|+|+++++||+++|+|||||||||||++|+|..+|. +|+|.++|.++... ..++.+||++|++.
T Consensus 37 ~~~iL~~vs~~i~~Ge~~aI~G~sGsGKSTLL~~L~g~~~~~~~~~G~i~~~g~~~~~~-------~~~~~i~yv~Q~~~ 109 (617)
T TIGR00955 37 RKHLLKNVSGVAKPGELLAVMGSSGAGKTTLMNALAFRSPKGVKGSGSVLLNGMPIDAK-------EMRAISAYVQQDDL 109 (617)
T ss_pred ccccccCCEEEEeCCeEEEEECCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEECCHH-------HHhhhceeeccccc
Confidence 467999999999999999999999999999999999999885 89999999876421 23567999999984
Q ss_pred CCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCC------CCChHHHHHHHHHHHHhhCCCE
Q 035832 108 RYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPH------SLSGGYKRRLALAIQLVQVPDL 181 (245)
Q Consensus 108 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~------~LSgGqkqrv~iAral~~~p~l 181 (245)
+++.+||+||+.|+............+..++++++++.+|+.+. .+..++ .|||||||||+|||+|+.+|++
T Consensus 110 -~~~~lTV~e~l~f~~~~~~~~~~~~~~~~~~v~~~l~~lgL~~~-~~t~vg~~~~~~~LSgGqrkRvsia~aL~~~p~v 187 (617)
T TIGR00955 110 -FIPTLTVREHLMFQAHLRMPRRVTKKEKRERVDEVLQALGLRKC-ANTRIGVPGRVKGLSGGERKRLAFASELLTDPPL 187 (617)
T ss_pred -cCccCcHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHcCchhc-CcCccCCCCCCCCcCcchhhHHHHHHHHHcCCCE
Confidence 67788999999986322111111123345578899999999875 577776 5999999999999999999999
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChh-HHHhhccEEEEEeCCeEEEecc
Q 035832 182 LILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLK-EMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 182 lllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~-~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
++|||||+|||+.++..+++.|+++++ ++|||+++|++. ++.++||++++|++|+++..+.
T Consensus 188 lllDEPtsgLD~~~~~~l~~~L~~l~~~g~tvi~~~hq~~~~i~~~~D~i~ll~~G~~v~~G~ 250 (617)
T TIGR00955 188 LFCDEPTSGLDSFMAYSVVQVLKGLAQKGKTIICTIHQPSSELFELFDKIILMAEGRVAYLGS 250 (617)
T ss_pred EEeeCCCcchhHHHHHHHHHHHHHHHhCCCEEEEEeCCCCHHHHHHhceEEEeeCCeEEEECC
Confidence 999999999999999999999999975 689999999995 7889999999999999987654
|
|
| >TIGR00954 3a01203 Peroxysomal Fatty Acyl CoA Transporter (FAT) Family protei | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.9e-43 Score=340.22 Aligned_cols=196 Identities=22% Similarity=0.319 Sum_probs=161.5
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
..+|+++|++++|+++ +++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.+++
T Consensus 449 ~~~i~~~nv~~~~~~~-~~il~~isl~i~~Ge~~~IvG~nGsGKSTLl~lL~Gl~~~~~G~i~~~~-------------- 513 (659)
T TIGR00954 449 DNGIKFENIPLVTPNG-DVLIESLSFEVPSGNHLLICGPNGCGKSSLFRILGELWPVYGGRLTKPA-------------- 513 (659)
T ss_pred CCeEEEEeeEEECCCC-CeeeecceEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCeEeecC--------------
Confidence 3469999999999643 4699999999999999999999999999999999999999999998742
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCC---------CCCCChHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKD---------PHSLSGGY 165 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~~LSgGq 165 (245)
+++++|+||+|. ++ ..|++||+.++...... .......+++.++++.+++.+. .+++ +.+|||||
T Consensus 514 -~~~i~~v~Q~~~-l~-~~tv~eni~~~~~~~~~--~~~~~~~~~i~~~l~~~~l~~~-~~~~~g~~~~~~~~~~LSgGq 587 (659)
T TIGR00954 514 -KGKLFYVPQRPY-MT-LGTLRDQIIYPDSSEDM--KRRGLSDKDLEQILDNVQLTHI-LEREGGWSAVQDWMDVLSGGE 587 (659)
T ss_pred -CCcEEEECCCCC-CC-CcCHHHHHhcCCChhhh--hccCCCHHHHHHHHHHcCCHHH-HhhcCCcccccccccCCCHHH
Confidence 356999999984 44 45999999986321000 0000112346678888888764 3443 37999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeC
Q 035832 166 KRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDM 234 (245)
Q Consensus 166 kqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~ 234 (245)
|||++|||||+.+|+++||||||++||+.+++.+.+.+++. +.|+|++||+++.+ .+||++++|+.
T Consensus 588 kQRl~iARal~~~p~illLDEpts~LD~~~~~~l~~~l~~~--~~tvI~isH~~~~~-~~~d~il~l~~ 653 (659)
T TIGR00954 588 KQRIAMARLFYHKPQFAILDECTSAVSVDVEGYMYRLCREF--GITLFSVSHRKSLW-KYHEYLLYMDG 653 (659)
T ss_pred HHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHc--CCEEEEEeCchHHH-HhCCEEEEEeC
Confidence 99999999999999999999999999999999999998774 68999999999986 68999999973
|
|
| >COG4167 SapF ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-44 Score=284.67 Aligned_cols=223 Identities=27% Similarity=0.359 Sum_probs=184.4
Q ss_pred cceEEEEeEEEECCC-------CccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCC
Q 035832 15 YSCLEVRDVSYRPPG-------TQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEP 87 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~-------~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~ 87 (245)
++.++++|++|.|.. ....+++.|||++++|+.+|++|.||||||||.|+|+|+++|++|+|.+||+.+....
T Consensus 2 ~~LLeV~nLsKtF~~~~~lf~r~~~~AV~~vSFtL~~~QTlaiIG~NGSGKSTLakMlaGmi~PTsG~il~n~~~L~~~D 81 (267)
T COG4167 2 ETLLEVRNLSKTFRYRTGLFRRQTVEAVKPVSFTLREGQTLAIIGENGSGKSTLAKMLAGMIEPTSGEILINDHPLHFGD 81 (267)
T ss_pred cchhhhhhhhhhhhhhhhhhhhhhhhcccceEEEecCCcEEEEEccCCCcHhHHHHHHhcccCCCCceEEECCccccccc
Confidence 356899999987742 2346899999999999999999999999999999999999999999999999875432
Q ss_pred CCCCCCCCCCcEEEEecCCCCCCCc-ccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHH
Q 035832 88 NNSPEPLPPEKVGIVFQFPERYFVA-DNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYK 166 (245)
Q Consensus 88 ~~~~~~~~~~~i~~v~Q~~~~~~~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqk 166 (245)
. ..+.++|-++||+|+..|++ +.+-.-+..++... .........+++.+.|..+||-....+-+|+.||-|||
T Consensus 82 y----~~R~k~IRMiFQDpnts~NPRl~iGqiLd~PL~l~--T~~~~~~R~~~i~~TL~~VGL~Pdhan~~~~~la~~QK 155 (267)
T COG4167 82 Y----SFRSKRIRMIFQDPNTSLNPRLRIGQILDFPLRLN--TDLEPEQRRKQIFETLRMVGLLPDHANYYPHMLAPGQK 155 (267)
T ss_pred h----HhhhhheeeeecCCccccChhhhhhhHhcchhhhc--ccCChHHHHHHHHHHHHHhccCccccccchhhcCchhH
Confidence 2 23457899999999765543 34444444432221 11223344567888999999965557889999999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEeccC
Q 035832 167 RRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQRI 243 (245)
Q Consensus 167 qrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~~ 243 (245)
|||++||||+.+|+++|.||..++||...+.++.+++.++.+ +.+.|.|+.++..+..++|.|++|++|+++..+.+
T Consensus 156 QRVaLARALIL~P~iIIaDeAl~~LD~smrsQl~NL~LeLQek~GiSyiYV~QhlG~iKHi~D~viVM~EG~vvE~G~t 234 (267)
T COG4167 156 QRVALARALILRPKIIIADEALASLDMSMRSQLINLMLELQEKQGISYIYVTQHIGMIKHISDQVLVMHEGEVVERGST 234 (267)
T ss_pred HHHHHHHHHhcCCcEEEehhhhhhccHHHHHHHHHHHHHHHHHhCceEEEEechhhHhhhhcccEEEEecCceeecCCh
Confidence 999999999999999999999999999999999999999975 58999999999999999999999999999987643
|
|
| >COG4586 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.2e-44 Score=305.34 Aligned_cols=217 Identities=27% Similarity=0.394 Sum_probs=172.2
Q ss_pred eEEEEeEEEECCC-------------------CccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEE
Q 035832 17 CLEVRDVSYRPPG-------------------TQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77 (245)
Q Consensus 17 ~l~~~~l~~~y~~-------------------~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~ 77 (245)
|+.++|+++.|.- ...++++|+||+|++|++++++|||||||||++|+|+|++.|++|.|.
T Consensus 3 ~i~~~~l~k~~~~~~k~pgl~g~l~~~~~~k~~~~~AVqdisf~IP~G~ivgflGaNGAGKSTtLKmLTGll~p~~G~v~ 82 (325)
T COG4586 3 MIMVENLSKNYPVAIKEPGLKGSLNHFFHRKERSIEAVQDISFEIPKGEIVGFLGANGAGKSTTLKMLTGLLLPTSGKVR 82 (325)
T ss_pred eeEecccccccceeeeCchhHHHHHhhcCchhhhhhhhheeeeecCCCcEEEEEcCCCCcchhhHHHHhCccccCCCeEE
Confidence 5777788776631 123589999999999999999999999999999999999999999999
Q ss_pred EcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCC
Q 035832 78 IRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKD 157 (245)
Q Consensus 78 ~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 157 (245)
++|.+..... ...-+++++|+-+-..++-...+.+.+..-.. .... ..+..+++...+.+.++++.. ++.+
T Consensus 83 V~G~~Pf~~~-----~~~~~~~~~v~gqk~ql~Wdlp~~ds~~v~~~--Iy~I-pd~~F~~r~~~l~eiLdl~~~-lk~~ 153 (325)
T COG4586 83 VNGKDPFRRR-----EEYLRSIGLVMGQKLQLWWDLPALDSLEVLKL--IYEI-PDDEFAERLDFLTEILDLEGF-LKWP 153 (325)
T ss_pred ecCcCcchhH-----HHHHHHHHHHhhhhheeeeechhhhhHHHHHH--HHhC-CHHHHHHHHHHHHHHhcchhh-hhhh
Confidence 9998753311 11235677775443222222233333322100 0000 133456778888999999986 7999
Q ss_pred CCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCC
Q 035832 158 PHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMG 235 (245)
Q Consensus 158 ~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G 235 (245)
++.||-|||.|+.||.||+++|++|+|||||-|||..++..+.+.|+++++ ++||+++||+++.+..+||||++|+.|
T Consensus 154 vr~LSlGqRmraeLaaaLLh~p~VLfLDEpTvgLDV~aq~~ir~Flke~n~~~~aTVllTTH~~~di~~lc~rv~~I~~G 233 (325)
T COG4586 154 VRKLSLGQRMRAELAAALLHPPKVLFLDEPTVGLDVNAQANIREFLKEYNEERQATVLLTTHIFDDIATLCDRVLLIDQG 233 (325)
T ss_pred hhhccchHHHHHHHHHHhcCCCcEEEecCCccCcchhHHHHHHHHHHHHHHhhCceEEEEecchhhHHHhhhheEEeeCC
Confidence 999999999999999999999999999999999999999999999999964 599999999999999999999999999
Q ss_pred eEEEecc
Q 035832 236 GFLVEQR 242 (245)
Q Consensus 236 ~i~~~~~ 242 (245)
+++.++.
T Consensus 234 qlv~dg~ 240 (325)
T COG4586 234 QLVFDGT 240 (325)
T ss_pred cEeeccc
Confidence 9998753
|
|
| >COG4618 ArpD ABC-type protease/lipase transport system, ATPase and permease components [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-43 Score=318.22 Aligned_cols=215 Identities=28% Similarity=0.375 Sum_probs=174.3
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.|.++++++.-++..+++++++||++.+||.++||||||||||||.|+|.|..+|.+|.|++||-++...+ ...+-
T Consensus 334 ~L~Ve~l~~~PPg~~~pil~~isF~l~~G~~lgIIGPSgSGKSTLaR~lvG~w~p~~G~VRLDga~l~qWd----~e~lG 409 (580)
T COG4618 334 ALSVERLTAAPPGQKKPILKGISFALQAGEALGIIGPSGSGKSTLARLLVGIWPPTSGSVRLDGADLRQWD----REQLG 409 (580)
T ss_pred eeeEeeeeecCCCCCCcceecceeEecCCceEEEECCCCccHHHHHHHHHcccccCCCcEEecchhhhcCC----HHHhc
Confidence 69999999988877789999999999999999999999999999999999999999999999999875432 23456
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
++|||+||+-+ +++.||.|||.-.........-.+......+.+++-.+ |-+.. ...-...||||||||++||||
T Consensus 410 ~hiGYLPQdVe--LF~GTIaeNIaRf~~~~d~~kIieAA~lAgvHelIl~lP~GYdT~-iG~~G~~LSgGQRQRIaLARA 486 (580)
T COG4618 410 RHIGYLPQDVE--LFDGTIAENIARFGEEADPEKVIEAARLAGVHELILRLPQGYDTR-IGEGGATLSGGQRQRIALARA 486 (580)
T ss_pred cccCcCcccce--ecCCcHHHHHHhccccCCHHHHHHHHHHcChHHHHHhCcCCccCc-cCCCCCCCCchHHHHHHHHHH
Confidence 88999999974 45789999997531111100001111122345555444 33332 455667899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEE
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLV 239 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~ 239 (245)
|..+|.+++||||-|+||.+....+.+.|.+.++ +.|+|+|||.+..+ ..+|+|++|++|++-.
T Consensus 487 lYG~P~lvVLDEPNsNLD~~GE~AL~~Ai~~~k~rG~~vvviaHRPs~L-~~~Dkilvl~~G~~~~ 551 (580)
T COG4618 487 LYGDPFLVVLDEPNSNLDSEGEAALAAAILAAKARGGTVVVIAHRPSAL-ASVDKILVLQDGRIAA 551 (580)
T ss_pred HcCCCcEEEecCCCCCcchhHHHHHHHHHHHHHHcCCEEEEEecCHHHH-hhcceeeeecCChHHh
Confidence 9999999999999999999999999999999975 69999999999865 6789999999998754
|
|
| >cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.5e-43 Score=286.80 Aligned_cols=146 Identities=29% Similarity=0.316 Sum_probs=132.6
Q ss_pred EeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEE
Q 035832 21 RDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVG 100 (245)
Q Consensus 21 ~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~ 100 (245)
.|++++|++ +.++++ +|+|++||+++|+||||||||||+|+|+|+++|++|+|.++|. .++
T Consensus 4 ~~l~~~~~~--~~~l~~-~~~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~----------------~i~ 64 (177)
T cd03222 4 PDCVKRYGV--FFLLVE-LGVVKEGEVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGI----------------TPV 64 (177)
T ss_pred CCeEEEECC--EEEEcc-CcEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCE----------------EEE
Confidence 689999964 468888 4999999999999999999999999999999999999999763 278
Q ss_pred EEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCC
Q 035832 101 IVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPD 180 (245)
Q Consensus 101 ~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~ 180 (245)
|++|++. ||||||||++|||||+.+|+
T Consensus 65 ~~~q~~~-----------------------------------------------------LSgGq~qrv~laral~~~p~ 91 (177)
T cd03222 65 YKPQYID-----------------------------------------------------LSGGELQRVAIAAALLRNAT 91 (177)
T ss_pred EEcccCC-----------------------------------------------------CCHHHHHHHHHHHHHhcCCC
Confidence 8887541 99999999999999999999
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhh-cC-ceEEEEecChhHHHhhccEEEEEeCCeEE
Q 035832 181 LLILDEPLAGLDWKARADVVKLLKHLK-KE-LTILVVSHDLKEMAALVDHSWRMDMGGFL 238 (245)
Q Consensus 181 llllDEPts~LD~~~~~~i~~~l~~l~-~~-~tiii~tHd~~~~~~~~d~v~~l~~G~i~ 238 (245)
++||||||++||+.+++.+.+.|.++. ++ .|||++||+++++..+||++++|+++..+
T Consensus 92 lllLDEPts~LD~~~~~~l~~~l~~~~~~~~~tiiivsH~~~~~~~~~d~i~~l~~~~~~ 151 (177)
T cd03222 92 FYLFDEPSAYLDIEQRLNAARAIRRLSEEGKKTALVVEHDLAVLDYLSDRIHVFEGEPGV 151 (177)
T ss_pred EEEEECCcccCCHHHHHHHHHHHHHHHHcCCCEEEEEECCHHHHHHhCCEEEEEcCCCcc
Confidence 999999999999999999999999985 44 89999999999999999999999987554
|
RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology. |
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-43 Score=327.74 Aligned_cols=203 Identities=33% Similarity=0.448 Sum_probs=170.8
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
.+|+++|+++.|++ +++|+++||+|.+|+.+||||+||||||||||+|+|.+.|++|+|...+
T Consensus 2 ~~i~~~~ls~~~g~--~~l~~~~~l~~~~G~riGLvG~NGaGKSTLLkilaG~~~~~~G~i~~~~--------------- 64 (530)
T COG0488 2 SMITLENLSLAYGD--RPLLENVSLTLNPGERIGLVGRNGAGKSTLLKILAGELEPDSGEVTRPK--------------- 64 (530)
T ss_pred ceEEEeeeEEeeCC--ceeecCCcceeCCCCEEEEECCCCCCHHHHHHHHcCCCcCCCCeEeecC---------------
Confidence 57999999999964 5799999999999999999999999999999999999999999998742
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchh-HHH--------------------------HHHHHHHHHHHHcC
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQ-LKE--------------------------YLALNLQRAINWVG 148 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~-~~~--------------------------~~~~~~~~~l~~~~ 148 (245)
..+++|++|++. .....||.+.+..+......... ... ..+.++..++.-+|
T Consensus 65 ~~~v~~l~Q~~~-~~~~~tv~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~e~~~~~~L~gLg 143 (530)
T COG0488 65 GLRVGYLSQEPP-LDPEKTVLDYVIEGFGELRELLAELEEAYALLADPDDELLAELEALLEELDGWTLEARAEEALLGLG 143 (530)
T ss_pred CceEEEeCCCCC-cCCCccHHHHHHhhhHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHhhcccchHHHHHHHHhcCC
Confidence 136999999985 44567999988876321100000 000 11245667788888
Q ss_pred CCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccE
Q 035832 149 LDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDH 228 (245)
Q Consensus 149 l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~ 228 (245)
+... ++++.+||||||.||+||+||+.+|++|||||||++||..+...+.+.|.++. + |+|+||||.+++...|++
T Consensus 144 ~~~~--~~~~~~LSGG~r~Rv~LA~aL~~~pDlLLLDEPTNHLD~~~i~WLe~~L~~~~-g-tviiVSHDR~FLd~V~t~ 219 (530)
T COG0488 144 FPDE--DRPVSSLSGGWRRRVALARALLEEPDLLLLDEPTNHLDLESIEWLEDYLKRYP-G-TVIVVSHDRYFLDNVATH 219 (530)
T ss_pred CCcc--cCchhhcCHHHHHHHHHHHHHhcCCCEEEEcCCCcccCHHHHHHHHHHHHhCC-C-cEEEEeCCHHHHHHHhhh
Confidence 8763 89999999999999999999999999999999999999999999999998764 3 999999999999999999
Q ss_pred EEEEeCCeEEEe
Q 035832 229 SWRMDMGGFLVE 240 (245)
Q Consensus 229 v~~l~~G~i~~~ 240 (245)
|+.++.|++...
T Consensus 220 I~~ld~g~l~~y 231 (530)
T COG0488 220 ILELDRGKLTPY 231 (530)
T ss_pred eEEecCCceeEe
Confidence 999999988654
|
|
| >COG4136 ABC-type uncharacterized transport system, ATPase component [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-43 Score=274.00 Aligned_cols=202 Identities=29% Similarity=0.455 Sum_probs=174.1
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---cceEEEcCccCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPT---SGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~ 93 (245)
|+.++|++.+.+++ -.|.++||+|.+|||+.|+||||||||||+.-+.|.+.++ +|++++++++++..+.
T Consensus 2 ~l~l~nvsl~l~g~--cLLa~~n~Tia~GeivtlMGPSGcGKSTLls~~~G~La~~F~~~G~~~l~~~~l~~lPa----- 74 (213)
T COG4136 2 MLCLKNVSLRLPGS--CLLANVNFTIAKGEIVTLMGPSGCGKSTLLSWMIGALAGQFSCTGELWLNEQRLDMLPA----- 74 (213)
T ss_pred ceeeeeeeecCCCc--eEEEeeeEEecCCcEEEEECCCCccHHHHHHHHHhhcccCcceeeEEEECCeeccccch-----
Confidence 68999999888763 5899999999999999999999999999999999999875 8999999998865432
Q ss_pred CCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
.++++|++||++ .+|+.++|.+|+.|..+..... ...+..+..+++..||+.. .++.|.+||||||-||++-|
T Consensus 75 -~qRq~GiLFQD~-lLFphlsVg~Nl~fAlp~~~KG----~aRr~~a~aAL~~~gL~g~-f~~dP~tlSGGQrARvaL~R 147 (213)
T COG4136 75 -AQRQIGILFQDA-LLFPHLSVGQNLLFALPATLKG----NARRNAANAALERSGLDGA-FHQDPATLSGGQRARVALLR 147 (213)
T ss_pred -hhhheeeeeccc-ccccccccccceEEecCccccc----HHHHhhHHHHHHHhccchh-hhcChhhcCcchHHHHHHHH
Confidence 257899999998 4889999999999986543222 1234457788999999986 69999999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-h-cCceEEEEecChhHHHhhccEEEEEe
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHL-K-KELTILVVSHDLKEMAALVDHSWRMD 233 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l-~-~~~tiii~tHd~~~~~~~~d~v~~l~ 233 (245)
+|+..|+.++||||||.||..-+.++.+++-.- . .+...|+||||...+. ...||+.|-
T Consensus 148 ~Lla~Pk~lLLDEPFS~LD~ALR~qfR~wVFs~~r~agiPtv~VTHD~~Dvp-agsrVie~~ 208 (213)
T COG4136 148 ALLAQPKALLLDEPFSRLDVALRDQFRQWVFSEVRAAGIPTVQVTHDLQDVP-AGSRVIEMA 208 (213)
T ss_pred HHHhCcceeeeCCchhHHHHHHHHHHHHHHHHHHHhcCCCeEEEecccccCC-CCCeeeeee
Confidence 999999999999999999999999999988654 3 3688999999999876 667887663
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-42 Score=356.08 Aligned_cols=217 Identities=24% Similarity=0.307 Sum_probs=178.2
Q ss_pred eEEEEeEEEECCC-----------CccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CcceEEEcCccC
Q 035832 17 CLEVRDVSYRPPG-----------TQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP--TSGSINIRGYNN 83 (245)
Q Consensus 17 ~l~~~~l~~~y~~-----------~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 83 (245)
.+..+||++..+. +.+.+|+|||+++++|++++|+|||||||||||++|+|..++ .+|+|.++|.+.
T Consensus 867 ~~~~~~v~y~v~~~~~~~~~~~~~~~~~iL~~vs~~i~~Gel~aL~G~sGaGKTTLL~~LaG~~~~g~~~G~I~inG~~~ 946 (1470)
T PLN03140 867 AMSFDDVNYFVDMPAEMKEQGVTEDRLQLLREVTGAFRPGVLTALMGVSGAGKTTLMDVLAGRKTGGYIEGDIRISGFPK 946 (1470)
T ss_pred eEEEEEEEEEEccCccccccccCcCCceEeeCcEEEEECCeEEEEECCCCCCHHHHHHHHcCCCCCCcccceEEECCccC
Confidence 5899999988631 124699999999999999999999999999999999999873 689999999765
Q ss_pred CCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCC-----
Q 035832 84 DGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDP----- 158 (245)
Q Consensus 84 ~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~----- 158 (245)
.. ...++.+||++|++. +++..||+|++.+.............+..+.++++++.++|.+. .++.+
T Consensus 947 ~~-------~~~~~~igyv~Q~d~-~~~~lTV~E~L~~~a~lr~~~~~~~~~~~~~v~~vl~~lgL~~~-~~~~vg~~~~ 1017 (1470)
T PLN03140 947 KQ-------ETFARISGYCEQNDI-HSPQVTVRESLIYSAFLRLPKEVSKEEKMMFVDEVMELVELDNL-KDAIVGLPGV 1017 (1470)
T ss_pred Ch-------HHhhhheEEEccccc-cCCCCcHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHCCChhH-hCCccCCCCC
Confidence 31 112457999999974 67789999999885211110001122334568889999999875 57775
Q ss_pred CCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChh-HHHhhccEEEEEeC-C
Q 035832 159 HSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLK-EMAALVDHSWRMDM-G 235 (245)
Q Consensus 159 ~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~-~~~~~~d~v~~l~~-G 235 (245)
..|||||||||+||++|+.+|++|+|||||+|||+.++..+++.|+++++ +.|||++||+++ ++...||++++|++ |
T Consensus 1018 ~~LSgGerkRvsIa~aL~~~P~lL~LDEPTsgLD~~~a~~v~~~L~~l~~~g~tVI~t~Hq~~~~i~~~~D~vllL~~gG 1097 (1470)
T PLN03140 1018 TGLSTEQRKRLTIAVELVANPSIIFMDEPTSGLDARAAAIVMRTVRNTVDTGRTVVCTIHQPSIDIFEAFDELLLMKRGG 1097 (1470)
T ss_pred CCcCHHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCCCHHHHHhCCEEEEEcCCC
Confidence 58999999999999999999999999999999999999999999999965 689999999998 47789999999996 7
Q ss_pred eEEEecc
Q 035832 236 GFLVEQR 242 (245)
Q Consensus 236 ~i~~~~~ 242 (245)
+++..+.
T Consensus 1098 ~~v~~G~ 1104 (1470)
T PLN03140 1098 QVIYSGP 1104 (1470)
T ss_pred EEEEECC
Confidence 8887654
|
|
| >COG4107 PhnK ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-43 Score=281.52 Aligned_cols=220 Identities=30% Similarity=0.392 Sum_probs=176.7
Q ss_pred CCcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCc-----cCCCCC
Q 035832 13 CDYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGY-----NNDGEP 87 (245)
Q Consensus 13 ~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~-----~~~~~~ 87 (245)
++.|.+++.++++.|++. ...+||||++.|||+.+|+|+|||||||||++|++-+.|++|+|.+.-. ++..++
T Consensus 2 ~~~PLL~V~~lsk~Yg~~--~gc~~vsF~l~PGeVLgiVGESGSGKtTLL~~is~rl~p~~G~v~Y~~r~~~~~dl~~ms 79 (258)
T COG4107 2 MDKPLLSVSGLSKLYGPG--KGCRDVSFDLYPGEVLGIVGESGSGKTTLLKCISGRLTPDAGTVTYRMRDGQPRDLYTMS 79 (258)
T ss_pred CCCcceeehhhhhhhCCC--cCccccceeecCCcEEEEEecCCCcHHhHHHHHhcccCCCCCeEEEEcCCCCchhHhhhc
Confidence 356789999999999753 5799999999999999999999999999999999999999999998653 222222
Q ss_pred CCCCCCCCCCcEEEEecCCCCCCC-----cccHHHHHH-hcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCC
Q 035832 88 NNSPEPLPPEKVGIVFQFPERYFV-----ADNVLDEVI-FGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSL 161 (245)
Q Consensus 88 ~~~~~~~~~~~i~~v~Q~~~~~~~-----~~tv~e~l~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L 161 (245)
..+.....|...|||.|+|..-+. .-++-|-+. .| .+. -...+..+.+|++.+.++....|..|.++
T Consensus 80 EaeRR~L~RTeWG~VhQnP~DGLRm~VSAG~NiGERlma~G-~RH------YG~iR~~a~~WL~~VEI~~~RiDD~PrtF 152 (258)
T COG4107 80 EAERRRLLRTEWGFVHQNPRDGLRMQVSAGGNIGERLMAIG-ARH------YGNIRAEAQDWLEEVEIDLDRIDDLPRTF 152 (258)
T ss_pred hHHHHHHhhhccceeecCccccceeeeccCCccchhHHhhh-hhh------hhhHHHHHHHHHHhcccCcccccCccccc
Confidence 222222334568999999853221 112233222 12 111 11345567889999999876678999999
Q ss_pred ChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEE
Q 035832 162 SGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLV 239 (245)
Q Consensus 162 SgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~ 239 (245)
||||+||+.|||-|+..|+++++||||.|||...+..++++++.+.. +.+++++|||+..+.-++||..+|++|+++.
T Consensus 153 SGGMqQRLQiARnLVt~PrLvfMDEPTGGLDVSVQARLLDllrgLv~~l~la~viVTHDl~VarLla~rlmvmk~g~vve 232 (258)
T COG4107 153 SGGMQQRLQIARNLVTRPRLVFMDEPTGGLDVSVQARLLDLLRGLVRELGLAVVIVTHDLAVARLLADRLMVMKQGQVVE 232 (258)
T ss_pred chHHHHHHHHHHHhccCCceEEecCCCCCcchhhHHHHHHHHHHHHHhcCceEEEEechhHHHHHhhhcceeecCCCEec
Confidence 99999999999999999999999999999999999999999999964 5799999999999998999999999999987
Q ss_pred ec
Q 035832 240 EQ 241 (245)
Q Consensus 240 ~~ 241 (245)
.+
T Consensus 233 ~G 234 (258)
T COG4107 233 SG 234 (258)
T ss_pred cc
Confidence 54
|
|
| >PRK13409 putative ATPase RIL; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.5e-43 Score=331.96 Aligned_cols=207 Identities=26% Similarity=0.306 Sum_probs=165.9
Q ss_pred cCCcceEEEEe--------EEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEE------
Q 035832 12 SCDYSCLEVRD--------VSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN------ 77 (245)
Q Consensus 12 ~~~~~~l~~~~--------l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~------ 77 (245)
.|+-..|++-| ++++|+++ ..+|++++ .+++||++||+||||||||||+|+|+|+++|++|+|.
T Consensus 60 ~cp~~a~~i~~~p~~~~~~~~~~yg~~-~~~L~~l~-~i~~Gev~gLvG~NGaGKSTLlkiL~G~l~p~~G~i~~~~~~~ 137 (590)
T PRK13409 60 KCPFDAISIVNLPEELEEEPVHRYGVN-GFKLYGLP-IPKEGKVTGILGPNGIGKTTAVKILSGELIPNLGDYEEEPSWD 137 (590)
T ss_pred cCCcceEEEeeCchhhccCceEEecCC-ceeEecCC-cCCCCCEEEEECCCCCCHHHHHHHHhCCccCCCccccCCCcHH
Confidence 45555566644 67899742 35899999 8999999999999999999999999999999999997
Q ss_pred -----EcCccCCCCCCCCCCCCCCCcEEEEecCCCC--CCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCC
Q 035832 78 -----IRGYNNDGEPNNSPEPLPPEKVGIVFQFPER--YFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLD 150 (245)
Q Consensus 78 -----~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 150 (245)
++|.++....... .....++++.+|.... .+...||.|++... ....++.++++.+++.
T Consensus 138 ~~~~~~~G~~l~~~~~~~--~~~~~~~~~~~q~~~~~p~~~~~tv~e~l~~~------------~~~~~~~~~l~~l~l~ 203 (590)
T PRK13409 138 EVLKRFRGTELQNYFKKL--YNGEIKVVHKPQYVDLIPKVFKGKVRELLKKV------------DERGKLDEVVERLGLE 203 (590)
T ss_pred HHHHHhCChHHHHHHHHH--hccCcceeecccchhhhhhhhcchHHHHHHhh------------hHHHHHHHHHHHcCCc
Confidence 8888764211000 0012345666665321 11234888888631 1223577889999998
Q ss_pred CccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEE
Q 035832 151 GTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSW 230 (245)
Q Consensus 151 ~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~ 230 (245)
+. +++++.+|||||||||+||+||+.+|++|||||||++||+.++..+.++|+++.++.|||++|||++++..+||+++
T Consensus 204 ~~-~~~~~~~LSgGe~qrv~ia~al~~~p~lllLDEPts~LD~~~~~~l~~~i~~l~~g~tvIivsHd~~~l~~~~D~v~ 282 (590)
T PRK13409 204 NI-LDRDISELSGGELQRVAIAAALLRDADFYFFDEPTSYLDIRQRLNVARLIRELAEGKYVLVVEHDLAVLDYLADNVH 282 (590)
T ss_pred hh-hcCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEE
Confidence 75 79999999999999999999999999999999999999999999999999998667899999999999999999999
Q ss_pred EEeCC
Q 035832 231 RMDMG 235 (245)
Q Consensus 231 ~l~~G 235 (245)
+|.++
T Consensus 283 vl~~~ 287 (590)
T PRK13409 283 IAYGE 287 (590)
T ss_pred EEeCC
Confidence 99863
|
|
| >cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.9e-42 Score=276.25 Aligned_cols=155 Identities=39% Similarity=0.572 Sum_probs=139.2
Q ss_pred EEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcE
Q 035832 20 VRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKV 99 (245)
Q Consensus 20 ~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i 99 (245)
++|+++.|++ .++++++||+|++|++++|+||||||||||+++|+|+++|++|+|+++|.++..... ..+++.+
T Consensus 2 ~~~~~~~~~~--~~~l~~~~~~i~~g~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~----~~~~~~i 75 (157)
T cd00267 2 IENLSFRYGG--RTALDNVSLTLKAGEIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPL----EELRRRI 75 (157)
T ss_pred eEEEEEEeCC--eeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCH----HHHHhce
Confidence 6899999964 369999999999999999999999999999999999999999999999987643211 1124568
Q ss_pred EEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCC
Q 035832 100 GIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVP 179 (245)
Q Consensus 100 ~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p 179 (245)
+|+|| ||+||+||++||||++.+|
T Consensus 76 ~~~~q--------------------------------------------------------lS~G~~~r~~l~~~l~~~~ 99 (157)
T cd00267 76 GYVPQ--------------------------------------------------------LSGGQRQRVALARALLLNP 99 (157)
T ss_pred EEEee--------------------------------------------------------CCHHHHHHHHHHHHHhcCC
Confidence 88887 9999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCe
Q 035832 180 DLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGG 236 (245)
Q Consensus 180 ~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~ 236 (245)
++++|||||++||+.++..+.+.+.++.+ +.|+|++||+++++..+||++++|++|+
T Consensus 100 ~i~ilDEp~~~lD~~~~~~l~~~l~~~~~~~~tii~~sh~~~~~~~~~d~i~~l~~g~ 157 (157)
T cd00267 100 DLLLLDEPTSGLDPASRERLLELLRELAEEGRTVIIVTHDPELAELAADRVIVLKDGK 157 (157)
T ss_pred CEEEEeCCCcCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHHHHhCCEEEEEeCcC
Confidence 99999999999999999999999999865 4899999999999999999999999875
|
The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.6e-42 Score=280.60 Aligned_cols=157 Identities=27% Similarity=0.362 Sum_probs=133.0
Q ss_pred ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCC
Q 035832 31 QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYF 110 (245)
Q Consensus 31 ~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~ 110 (245)
.+++|+|+||+|++|++++|+||||||||||||++. +++|++.++|..- . ..+..++|++|
T Consensus 7 ~~~~l~~isl~i~~G~~~~l~G~nG~GKSTLl~~il----~~~G~v~~~~~~~-~--------~~~~~~~~~~q------ 67 (176)
T cd03238 7 NVHNLQNLDVSIPLNVLVVVTGVSGSGKSTLVNEGL----YASGKARLISFLP-K--------FSRNKLIFIDQ------ 67 (176)
T ss_pred eeeeecceEEEEcCCCEEEEECCCCCCHHHHHHHHh----hcCCcEEECCccc-c--------cccccEEEEhH------
Confidence 467999999999999999999999999999999985 3699999976421 0 11234667665
Q ss_pred CcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhC--CCEEEEeCCC
Q 035832 111 VADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQV--PDLLILDEPL 188 (245)
Q Consensus 111 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~--p~llllDEPt 188 (245)
.++++.+++....+++++.+||||||||++|||||+.+ |+++||||||
T Consensus 68 ------------------------------~~~l~~~~L~~~~~~~~~~~LSgGq~qrl~laral~~~~~p~llLlDEPt 117 (176)
T cd03238 68 ------------------------------LQFLIDVGLGYLTLGQKLSTLSGGELQRVKLASELFSEPPGTLFILDEPS 117 (176)
T ss_pred ------------------------------HHHHHHcCCCccccCCCcCcCCHHHHHHHHHHHHHhhCCCCCEEEEeCCc
Confidence 13467778865336889999999999999999999999 9999999999
Q ss_pred CCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeE
Q 035832 189 AGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGF 237 (245)
Q Consensus 189 s~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i 237 (245)
++||+.+++.+.+.|+++.+ +.|||++||+++++ ..||++++|++|+.
T Consensus 118 ~~LD~~~~~~l~~~l~~~~~~g~tvIivSH~~~~~-~~~d~i~~l~~g~~ 166 (176)
T cd03238 118 TGLHQQDINQLLEVIKGLIDLGNTVILIEHNLDVL-SSADWIIDFGPGSG 166 (176)
T ss_pred ccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHH-HhCCEEEEECCCCC
Confidence 99999999999999999864 68999999999987 57999999977544
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >TIGR00957 MRP_assoc_pro multi drug resistance-associated protein (MRP) | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-41 Score=350.31 Aligned_cols=198 Identities=23% Similarity=0.379 Sum_probs=162.5
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.|+++|+++.|++...++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|
T Consensus 636 ~i~~~~~~~~~~~~~~~~l~~isl~i~~G~~v~IvG~~GsGKSTLl~~l~g~~~~~~G~i~~~g---------------- 699 (1522)
T TIGR00957 636 SITVHNATFTWARDLPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVHMKG---------------- 699 (1522)
T ss_pred cEEEEEeEEEcCCCCCceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCccCCcEEEECC----------------
Confidence 6999999999975445799999999999999999999999999999999999999999999864
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHH--HH---HHHHHHc--CCCCccCCCCCCCCChHHHHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLAL--NL---QRAINWV--GLDGTSLDKDPHSLSGGYKRRL 169 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~--~~---~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv 169 (245)
+|+|++|+|. ++..|++||+.++... . ..+..+ .+ .+.++.+ |.+. ..++.+.+||||||||+
T Consensus 700 -~i~yv~Q~~~--l~~~Ti~eNI~~g~~~---~---~~~~~~~~~~~~l~~~l~~~~~g~~t-~ig~~g~~LSGGQkqRi 769 (1522)
T TIGR00957 700 -SVAYVPQQAW--IQNDSLRENILFGKAL---N---EKYYQQVLEACALLPDLEILPSGDRT-EIGEKGVNLSGGQKQRV 769 (1522)
T ss_pred -EEEEEcCCcc--ccCCcHHHHhhcCCcc---C---HHHHHHHHHHhCCHHHHHhcCCCCCc-eecCCCCCCCHHHHHHH
Confidence 4999999984 3468999999997321 1 111111 11 1122222 2222 24677899999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHh---hcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 170 ALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHL---KKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 170 ~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l---~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+||||++.+|+++||||||++||+.+.+.+++.+... .+++|+|++||+++.+.. ||++++|++|+++..+
T Consensus 770 aLARAl~~~~~illLDEp~saLD~~~~~~i~~~l~~~~~~~~~~tvIlvTH~~~~l~~-~D~ii~l~~G~i~~~g 843 (1522)
T TIGR00957 770 SLARAVYSNADIYLFDDPLSAVDAHVGKHIFEHVIGPEGVLKNKTRILVTHGISYLPQ-VDVIIVMSGGKISEMG 843 (1522)
T ss_pred HHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhhhcCCEEEEEeCChhhhhh-CCEEEEecCCeEEeeC
Confidence 9999999999999999999999999999999998653 356899999999998764 9999999999998654
|
This model describes multi drug resistance-associated protein (MRP) in eukaryotes. The multidrug resistance-associated protein is an integral membrane protein that causes multidrug resistance when overexpressed in mammalian cells. It belongs to ABC transporter superfamily. The protein topology and function was experimentally demonstrated by epitope tagging and immunofluorescence. Insertion of tags in the critical regions associated with drug efflux, abrogated its function. The C-terminal domain seem to highly conserved. |
| >COG1134 TagH ABC-type polysaccharide/polyol phosphate transport system, ATPase component [Carbohydrate transport and metabolism / Cell envelope biogenesis, outer membrane] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.6e-41 Score=283.35 Aligned_cols=191 Identities=27% Similarity=0.377 Sum_probs=163.3
Q ss_pred cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCC
Q 035832 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFV 111 (245)
Q Consensus 32 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~ 111 (245)
.++|+||||++++||.+||+|+||||||||+|+|+|.++|++|+|.++|+ |++++.-..-+-+
T Consensus 40 ~~aL~disf~i~~Ge~vGiiG~NGaGKSTLlkliaGi~~Pt~G~v~v~G~-----------------v~~li~lg~Gf~p 102 (249)
T COG1134 40 FWALKDISFEIYKGERVGIIGHNGAGKSTLLKLIAGIYKPTSGKVKVTGK-----------------VAPLIELGAGFDP 102 (249)
T ss_pred EEEecCceEEEeCCCEEEEECCCCCcHHHHHHHHhCccCCCCceEEEcce-----------------EehhhhcccCCCc
Confidence 56999999999999999999999999999999999999999999999764 2222222222334
Q ss_pred cccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 035832 112 ADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGL 191 (245)
Q Consensus 112 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~L 191 (245)
.+|.+||+.+-.... + ..+++.++.++++++.-+|.++ .++|+.++|.||+-|+++|.|...+|++||+||-.+.-
T Consensus 103 elTGreNi~l~~~~~-G--~~~~ei~~~~~eIieFaELG~f-i~~PvktYSSGM~aRLaFsia~~~~pdILllDEvlavG 178 (249)
T COG1134 103 ELTGRENIYLRGLIL-G--LTRKEIDEKVDEIIEFAELGDF-IDQPVKTYSSGMYARLAFSVATHVEPDILLLDEVLAVG 178 (249)
T ss_pred ccchHHHHHHHHHHh-C--ccHHHHHHHHHHHHHHHHHHHH-hhCchhhccHHHHHHHHHhhhhhcCCCEEEEehhhhcC
Confidence 679999998741111 1 1245667788888988899886 79999999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHHhh-cCceEEEEecChhHHHhhccEEEEEeCCeEEEeccC
Q 035832 192 DWKARADVVKLLKHLK-KELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQRI 243 (245)
Q Consensus 192 D~~~~~~i~~~l~~l~-~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~~ 243 (245)
|+.-+++-.+.+.++. ++.|||+||||++.+.++|||+++|++|++...+++
T Consensus 179 D~~F~~K~~~rl~e~~~~~~tiv~VSHd~~~I~~~Cd~~i~l~~G~i~~~G~~ 231 (249)
T COG1134 179 DAAFQEKCLERLNELVEKNKTIVLVSHDLGAIKQYCDRAIWLEHGQIRMEGSP 231 (249)
T ss_pred CHHHHHHHHHHHHHHHHcCCEEEEEECCHHHHHHhcCeeEEEeCCEEEEcCCH
Confidence 9999999999999994 569999999999999999999999999999887653
|
|
| >PLN03073 ABC transporter F family; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-42 Score=333.48 Aligned_cols=220 Identities=23% Similarity=0.212 Sum_probs=164.4
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCC---CCCcceEEEcCccCCCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLS---KPTSGSINIRGYNNDGEPNNS 90 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~---~p~~G~i~~~g~~~~~~~~~~ 90 (245)
...+|+++|++++|++ +++|+|+||+|++|+++||+||||||||||||+|+|.. .|++|+|.+.++.+.......
T Consensus 174 ~~~~I~i~nls~~y~~--~~ll~~isl~i~~Ge~~gLvG~NGsGKSTLLr~l~g~~~~g~p~~g~I~~~~Q~~~g~~~t~ 251 (718)
T PLN03073 174 AIKDIHMENFSISVGG--RDLIVDASVTLAFGRHYGLVGRNGTGKTTFLRYMAMHAIDGIPKNCQILHVEQEVVGDDTTA 251 (718)
T ss_pred CceeEEEceEEEEeCC--CEEEECCEEEECCCCEEEEECCCCCCHHHHHHHHcCCCCCCCCCCCEEEEEeccCCCCCCCH
Confidence 3457999999999964 46999999999999999999999999999999999964 578999987666542211000
Q ss_pred ----------CCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchh---------------HHHHHHHHHHHHHH
Q 035832 91 ----------PEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQ---------------LKEYLALNLQRAIN 145 (245)
Q Consensus 91 ----------~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~---------------~~~~~~~~~~~~l~ 145 (245)
....+++.++|++|++...+. ++.++............. .......++.++++
T Consensus 252 ~~~v~~~~~~~~~~~~~~~~~~~q~~~l~~~--~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~r~~~~L~ 329 (718)
T PLN03073 252 LQCVLNTDIERTQLLEEEAQLVAQQRELEFE--TETGKGKGANKDGVDKDAVSQRLEEIYKRLELIDAYTAEARAASILA 329 (718)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHhhhc--ccccccccccccccchHHHHHHHHHHHHHHHhcCcchHHHHHHHHHH
Confidence 000112346778876532211 222221111000000000 00022345778889
Q ss_pred HcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhh
Q 035832 146 WVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAAL 225 (245)
Q Consensus 146 ~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~ 225 (245)
.+|+.+...++++.+|||||||||+|||||+.+|++|||||||++||+.++..+.++|+++ +.|||+||||++++..+
T Consensus 330 ~lgl~~~~~~~~~~~LSgG~k~rv~LA~aL~~~p~lLlLDEPt~~LD~~~~~~l~~~L~~~--~~tviivsHd~~~l~~~ 407 (718)
T PLN03073 330 GLSFTPEMQVKATKTFSGGWRMRIALARALFIEPDLLLLDEPTNHLDLHAVLWLETYLLKW--PKTFIVVSHAREFLNTV 407 (718)
T ss_pred HCCCChHHHhCchhhCCHHHHHHHHHHHHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHc--CCEEEEEECCHHHHHHh
Confidence 9999643468899999999999999999999999999999999999999999999999887 57999999999999999
Q ss_pred ccEEEEEeCCeEEE
Q 035832 226 VDHSWRMDMGGFLV 239 (245)
Q Consensus 226 ~d~v~~l~~G~i~~ 239 (245)
||++++|++|++..
T Consensus 408 ~d~i~~l~~g~i~~ 421 (718)
T PLN03073 408 VTDILHLHGQKLVT 421 (718)
T ss_pred CCEEEEEECCEEEE
Confidence 99999999999974
|
|
| >PLN03232 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-41 Score=350.21 Aligned_cols=196 Identities=23% Similarity=0.321 Sum_probs=159.6
Q ss_pred eEEEEeEEEECCCC-ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGT-QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 17 ~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
.|+++|++|+|++. .+++|+|+||+|++||.++|+||+|||||||+++|+|+++|++|.+.. .
T Consensus 614 ~I~~~~vsF~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~G~i~~----------------~ 677 (1495)
T PLN03232 614 AISIKNGYFSWDSKTSKPTLSDINLEIPVGSLVAIVGGTGEGKTSLISAMLGELSHAETSSVV----------------I 677 (1495)
T ss_pred cEEEEeeEEEcCCCCCCceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCcccCCCEEE----------------e
Confidence 59999999999742 357999999999999999999999999999999999999999987632 2
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC----------ccCCCCCCCCChHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG----------TSLDKDPHSLSGGY 165 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----------~~~~~~~~~LSgGq 165 (245)
++.|+||+|+|. +++.|++||+.|+.+. . . +++.++++.+++.+ ........+|||||
T Consensus 678 ~~~Iayv~Q~p~--Lf~gTIreNI~fg~~~---~---~----e~~~~vl~~~~L~~di~~Lp~Gd~T~IGe~G~~LSGGQ 745 (1495)
T PLN03232 678 RGSVAYVPQVSW--IFNATVRENILFGSDF---E---S----ERYWRAIDVTALQHDLDLLPGRDLTEIGERGVNISGGQ 745 (1495)
T ss_pred cCcEEEEcCccc--cccccHHHHhhcCCcc---C---H----HHHHHHHHHhCCHHHHHhCCCCCCceecCCCcccCHHH
Confidence 467999999984 4578999999998321 1 1 12233333333321 12345667899999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 166 KRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKL-LKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 166 kqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~-l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|||++||||++.+|+++|||||||+||+++.+.+++. +....+++|+|++||+++.+ ..||+|++|++|+++..+
T Consensus 746 kQRIaLARAly~~~~IlLLDEptSaLD~~t~~~I~~~~l~~~l~~kT~IlvTH~~~~l-~~aD~Ii~L~~G~i~~~G 821 (1495)
T PLN03232 746 KQRVSMARAVYSNSDIYIFDDPLSALDAHVAHQVFDSCMKDELKGKTRVLVTNQLHFL-PLMDRIILVSEGMIKEEG 821 (1495)
T ss_pred HHHHHHHHHHhcCCCEEEEcCCccccCHHHHHHHHHHHhhhhhcCCEEEEEECChhhH-HhCCEEEEEeCCEEEEec
Confidence 9999999999999999999999999999999988765 55555679999999999875 579999999999998754
|
|
| >PLN03130 ABC transporter C family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-41 Score=349.24 Aligned_cols=195 Identities=25% Similarity=0.365 Sum_probs=160.7
Q ss_pred ceEEEEeEEEECCCC-ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCc-ceEEEcCccCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGT-QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTS-GSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~-G~i~~~g~~~~~~~~~~~~~ 93 (245)
..|+++|++|+|+.. .+++|+|+||+|++|+.++|+||+|||||||+++|+|.++|++ |+|.+
T Consensus 613 ~~I~~~nvsf~y~~~~~~~vL~~inl~i~~Ge~vaIvG~sGSGKSTLl~lLlG~~~~~~GG~I~l--------------- 677 (1622)
T PLN03130 613 PAISIKNGYFSWDSKAERPTLSNINLDVPVGSLVAIVGSTGEGKTSLISAMLGELPPRSDASVVI--------------- 677 (1622)
T ss_pred CceEEEeeEEEccCCCCCceeeceeEEecCCCEEEEECCCCCCHHHHHHHHHHhhccCCCceEEE---------------
Confidence 359999999999642 3568999999999999999999999999999999999999999 89975
Q ss_pred CCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCC-----------CCccCCCCCCCCC
Q 035832 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGL-----------DGTSLDKDPHSLS 162 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~~LS 162 (245)
+.+|+||+|+|. +++.|++||+.|+.+. . ++++.++++.+++ +. .......+||
T Consensus 678 --~~~Iayv~Q~p~--LfngTIreNI~fg~~~---d-------~e~y~~vl~a~~L~~di~~LP~Gd~T-~IGe~G~~LS 742 (1622)
T PLN03130 678 --RGTVAYVPQVSW--IFNATVRDNILFGSPF---D-------PERYERAIDVTALQHDLDLLPGGDLT-EIGERGVNIS 742 (1622)
T ss_pred --cCeEEEEcCccc--cCCCCHHHHHhCCCcc---c-------HHHHHHHHHHhCcHHHHHhCCCcccc-cccCCCCCCC
Confidence 356999999984 4578999999998431 1 1123333333333 22 2355677899
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 163 GGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVK-LLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 163 gGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~-~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||||||++||||++.+|+++|||||||+||+++.+.+++ .+....+++|+|++||+++.+ ..||+|++|++|+++..+
T Consensus 743 GGQKQRIaLARAly~~~~IlLLDEptSALD~~~~~~I~~~~l~~~l~~kTvIlVTH~l~~l-~~aD~Ii~L~~G~i~e~G 821 (1622)
T PLN03130 743 GGQKQRVSMARAVYSNSDVYIFDDPLSALDAHVGRQVFDKCIKDELRGKTRVLVTNQLHFL-SQVDRIILVHEGMIKEEG 821 (1622)
T ss_pred HHHHHHHHHHHHHhCCCCEEEECCCccccCHHHHHHHHHHHhhHHhcCCEEEEEECCHhHH-HhCCEEEEEeCCEEEEeC
Confidence 999999999999999999999999999999999988764 566555679999999999875 579999999999998654
|
|
| >TIGR00956 3a01205 Pleiotropic Drug Resistance (PDR) Family protein | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-41 Score=346.07 Aligned_cols=204 Identities=20% Similarity=0.177 Sum_probs=166.9
Q ss_pred cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCC----CCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCC
Q 035832 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLS----KPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPE 107 (245)
Q Consensus 32 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~ 107 (245)
+++|+|+|+++++||+++|+||||||||||||+|+|+. +|++|+|.++|+++.... ...++.++|++|++.
T Consensus 74 ~~iL~~vs~~i~~Ge~~aIlG~nGsGKSTLLk~LaG~~~~~~~~~~G~I~~~G~~~~~~~-----~~~r~~i~yv~Q~d~ 148 (1394)
T TIGR00956 74 FDILKPMDGLIKPGELTVVLGRPGSGCSTLLKTIASNTDGFHIGVEGVITYDGITPEEIK-----KHYRGDVVYNAETDV 148 (1394)
T ss_pred ceeeeCCEEEEECCEEEEEECCCCCCHHHHHHHHhCCCCCCCCCceeEEEECCEehHHHH-----hhcCceeEEeccccc
Confidence 46999999999999999999999999999999999996 578999999998764321 123567999999974
Q ss_pred CCCCcccHHHHHHhcCCCCC-C---chhHHHHHH-HHHHHHHHHcCCCCccCCCC-----CCCCChHHHHHHHHHHHHhh
Q 035832 108 RYFVADNVLDEVIFGWPRQS-G---SIQLKEYLA-LNLQRAINWVGLDGTSLDKD-----PHSLSGGYKRRLALAIQLVQ 177 (245)
Q Consensus 108 ~~~~~~tv~e~l~~~~~~~~-~---~~~~~~~~~-~~~~~~l~~~~l~~~~~~~~-----~~~LSgGqkqrv~iAral~~ 177 (245)
+++.+||+|++.|+..... . ....+++.. ...+++++.+||.+. .+++ +..|||||||||+||+||+.
T Consensus 149 -~~~~lTV~E~l~f~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lgL~~~-~~t~vg~~~~~~LSGGerkRvsIA~aL~~ 226 (1394)
T TIGR00956 149 -HFPHLTVGETLDFAARCKTPQNRPDGVSREEYAKHIADVYMATYGLSHT-RNTKVGNDFVRGVSGGERKRVSIAEASLG 226 (1394)
T ss_pred -cCCCCCHHHHHHHHHHhCCCCCCCCCCCHHHHHHHHHHHHHHHcCcccc-cCceeCCCcCCCCCcccchHHHHHHHHHh
Confidence 6788999999998632110 0 000112222 224568999999875 4544 57899999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecCh-hHHHhhccEEEEEeCCeEEEecc
Q 035832 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDL-KEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~-~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
+|++++|||||+|||+.++..+++.|+++++ +.|||+++|++ +++.+++|++++|++|+++..+.
T Consensus 227 ~p~vlllDEPTsgLD~~~~~~i~~~L~~la~~~g~tvii~~Hq~~~~i~~l~D~v~~L~~G~iv~~G~ 294 (1394)
T TIGR00956 227 GAKIQCWDNATRGLDSATALEFIRALKTSANILDTTPLVAIYQCSQDAYELFDKVIVLYEGYQIYFGP 294 (1394)
T ss_pred CCCEEEEeCCCCCcCHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHhhceEEEEeCCeEEEECC
Confidence 9999999999999999999999999999964 68999999996 68889999999999999987653
|
|
| >KOG0056 consensus Heavy metal exporter HMT1, ABC superfamily [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.6e-42 Score=308.41 Aligned_cols=215 Identities=24% Similarity=0.344 Sum_probs=174.8
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
-|+++||+|.|.. .+++|+||||++.+|+.+||+||||+||||++|++..+...++|+|.+||+|+..... ...|
T Consensus 537 ~i~fsnvtF~Y~p-~k~vl~disF~v~pGktvAlVG~SGaGKSTimRlLfRffdv~sGsI~iDgqdIrnvt~----~SLR 611 (790)
T KOG0056|consen 537 KIEFSNVTFAYDP-GKPVLSDISFTVQPGKTVALVGPSGAGKSTIMRLLFRFFDVNSGSITIDGQDIRNVTQ----SSLR 611 (790)
T ss_pred eEEEEEeEEecCC-CCceeecceEEecCCcEEEEECCCCCchhHHHHHHHHHhhccCceEEEcCchHHHHHH----HHHH
Confidence 4999999999976 4789999999999999999999999999999999999999999999999999854221 2247
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCc---cCCCCCCCCChHHHHHHHHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGT---SLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkqrv~iAr 173 (245)
+.||.||||.. +++.|+..|+.++.+......-.....+..+.+.+ +++++- ....+.-.|||||||||+|||
T Consensus 612 s~IGVVPQDtv--LFNdTI~yNIryak~~AsneevyaAAkAA~IHdrI--l~fPegY~t~VGERGLkLSGGEKQRVAiAR 687 (790)
T KOG0056|consen 612 SSIGVVPQDTV--LFNDTILYNIRYAKPSASNEEVYAAAKAAQIHDRI--LQFPEGYNTRVGERGLKLSGGEKQRVAIAR 687 (790)
T ss_pred HhcCcccCcce--eecceeeeheeecCCCCChHHHHHHHHHhhHHHHH--hcCchhhhhhhhhcccccCCcchhhHHHHH
Confidence 88999999973 45789999999985543321111111111222222 233322 134456679999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+++..|.+++|||.||+||..+.+++...|.++..+.|-|++.|.+..+- .+|.++++++|+|++.+
T Consensus 688 tiLK~P~iIlLDEATSALDT~tER~IQaaL~rlca~RTtIVvAHRLSTiv-nAD~ILvi~~G~IvErG 754 (790)
T KOG0056|consen 688 TILKAPSIILLDEATSALDTNTERAIQAALARLCANRTTIVVAHRLSTIV-NADLILVISNGRIVERG 754 (790)
T ss_pred HHhcCCcEEEEcchhhhcCCccHHHHHHHHHHHhcCCceEEEeeeehhee-cccEEEEEeCCeEeecC
Confidence 99999999999999999999999999999999998889999999999875 58999999999998754
|
|
| >TIGR01271 CFTR_protein cystic fibrosis transmembrane conductor regulator (CFTR) | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-40 Score=340.59 Aligned_cols=187 Identities=25% Similarity=0.396 Sum_probs=151.1
Q ss_pred ceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCc
Q 035832 33 DILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVA 112 (245)
Q Consensus 33 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~ 112 (245)
++|+|+||+|++|++++|+|||||||||||++|+|+++|++|+|.++| +|+|++|+|. .+ +
T Consensus 440 ~~l~~i~l~i~~G~~~~I~G~~GsGKSTLl~~l~G~~~~~~G~i~~~g-----------------~iayv~Q~~~-l~-~ 500 (1490)
T TIGR01271 440 PVLKNISFKLEKGQLLAVAGSTGSGKSSLLMMIMGELEPSEGKIKHSG-----------------RISFSPQTSW-IM-P 500 (1490)
T ss_pred cceeeeEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECC-----------------EEEEEeCCCc-cC-C
Confidence 589999999999999999999999999999999999999999999864 3899999985 44 4
Q ss_pred ccHHHHHHhcCCCCCCchhHHHHH-HHHHHHHHHHcCCC-CccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 035832 113 DNVLDEVIFGWPRQSGSIQLKEYL-ALNLQRAINWVGLD-GTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAG 190 (245)
Q Consensus 113 ~tv~e~l~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~l~-~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~ 190 (245)
.|++||+.|+.... ........ ...+.+.++.+... ......++.+|||||||||+||||++.+|+++||||||++
T Consensus 501 ~Ti~eNI~~g~~~~--~~~~~~~~~~~~L~~~l~~l~~g~~t~vg~~g~~LSgGqkqRi~lARAl~~~~~illLDep~sa 578 (1490)
T TIGR01271 501 GTIKDNIIFGLSYD--EYRYTSVIKACQLEEDIALFPEKDKTVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFTH 578 (1490)
T ss_pred ccHHHHHHhccccc--hHHHHHHHHHHhHHHHHHhccccccccccCcCCCcCHHHHHHHHHHHHHHcCCCEEEEeCCccc
Confidence 69999999974211 11111111 11223334443221 1124667889999999999999999999999999999999
Q ss_pred CCHHHHHHHHHH-HHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 191 LDWKARADVVKL-LKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 191 LD~~~~~~i~~~-l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||+.+++.+++. +..+.+++|+|++||+++.+. .||++++|++|+++..+
T Consensus 579 LD~~~~~~i~~~~l~~~~~~~tvilvtH~~~~~~-~ad~ii~l~~g~i~~~g 629 (1490)
T TIGR01271 579 LDVVTEKEIFESCLCKLMSNKTRILVTSKLEHLK-KADKILLLHEGVCYFYG 629 (1490)
T ss_pred CCHHHHHHHHHHHHHHHhcCCeEEEEeCChHHHH-hCCEEEEEECCEEEEEc
Confidence 999999999985 666666799999999999875 59999999999998654
|
The model describes the cystis fibrosis transmembrane conductor regulator (CFTR) in eukaryotes. The principal role of this protein is chloride ion conductance. The protein is predicted to consist of 12 transmembrane domains. Mutations or lesions in the genetic loci have been linked to the aetiology of asthma, bronchiectasis, chronic obstructive pulmonary disease etc. Disease-causing mutations have been studied by 36Cl efflux assays in vitro cell cultures and electrophysiology, all of which point to the impairment of chloride channel stability and not the biosynthetic processing per se. |
| >COG4133 CcmA ABC-type transport system involved in cytochrome c biogenesis, ATPase component [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=5e-41 Score=269.80 Aligned_cols=192 Identities=28% Similarity=0.321 Sum_probs=159.1
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
++++.+|++...+. ..+|.++||++.+||++.|.||||||||||||+|+|+.+|++|+|+|+|..+..... ..
T Consensus 1 ~~L~a~~L~~~R~e--~~lf~~L~f~l~~Ge~~~i~G~NG~GKTtLLRilaGLl~p~~G~v~~~~~~i~~~~~-----~~ 73 (209)
T COG4133 1 MMLEAENLSCERGE--RTLFSDLSFTLNAGEALQITGPNGAGKTTLLRILAGLLRPDAGEVYWQGEPIQNVRE-----SY 73 (209)
T ss_pred CcchhhhhhhccCc--ceeecceeEEEcCCCEEEEECCCCCcHHHHHHHHHcccCCCCCeEEecCCCCccchh-----hH
Confidence 35788999988754 579999999999999999999999999999999999999999999999887754321 11
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
.+.+-|+--++. .-..+|++||+.|.... ... .....+.++++.+||... .|.++++||-|||+||+|||-+
T Consensus 74 ~~~l~yLGH~~g-iK~eLTa~ENL~F~~~~-~~~-----~~~~~i~~Al~~vgL~g~-~dlp~~~LSAGQqRRvAlArL~ 145 (209)
T COG4133 74 HQALLYLGHQPG-IKTELTALENLHFWQRF-HGS-----GNAATIWEALAQVGLAGL-EDLPVGQLSAGQQRRVALARLW 145 (209)
T ss_pred HHHHHHhhcccc-ccchhhHHHHHHHHHHH-hCC-----CchhhHHHHHHHcCcccc-cccchhhcchhHHHHHHHHHHH
Confidence 245666666554 45678999999985211 111 123457889999999986 7999999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-cCceEEEEecChhHH
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLK-KELTILVVSHDLKEM 222 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~~~tiii~tHd~~~~ 222 (245)
+..++++||||||++||..+...+-.++..-. ++..||.+||..--+
T Consensus 146 ls~~pLWiLDEP~taLDk~g~a~l~~l~~~H~~~GGiVllttHq~l~~ 193 (209)
T COG4133 146 LSPAPLWILDEPFTALDKEGVALLTALMAAHAAQGGIVLLTTHQPLPI 193 (209)
T ss_pred cCCCCceeecCcccccCHHHHHHHHHHHHHHhcCCCEEEEecCCccCC
Confidence 99999999999999999999999999998765 468999999987544
|
|
| >PLN03140 ABC transporter G family member; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=338.39 Aligned_cols=202 Identities=27% Similarity=0.312 Sum_probs=166.7
Q ss_pred cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC---cceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCC
Q 035832 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPT---SGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPER 108 (245)
Q Consensus 32 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~ 108 (245)
+.+|+|+|+.|++||+++|+||||||||||||+|+|+++|+ +|+|.++|.++.... .++.++|++|++.
T Consensus 178 ~~IL~~vs~~i~~Ge~~~llGpnGSGKSTLLk~LaG~l~~~~~~~G~I~~nG~~~~~~~-------~~~~i~yv~Q~d~- 249 (1470)
T PLN03140 178 LTILKDASGIIKPSRMTLLLGPPSSGKTTLLLALAGKLDPSLKVSGEITYNGYRLNEFV-------PRKTSAYISQNDV- 249 (1470)
T ss_pred ceeccCCeEEEeCCeEEEEEcCCCCCHHHHHHHHhCCCCCCCcceeEEEECCEechhhc-------ccceeEEeccccc-
Confidence 46999999999999999999999999999999999999998 999999998764321 1467999999974
Q ss_pred CCCcccHHHHHHhcCCCC-CCc--------hhHHH--------H--------------HHHHHHHHHHHcCCCCcc----
Q 035832 109 YFVADNVLDEVIFGWPRQ-SGS--------IQLKE--------Y--------------LALNLQRAINWVGLDGTS---- 153 (245)
Q Consensus 109 ~~~~~tv~e~l~~~~~~~-~~~--------~~~~~--------~--------------~~~~~~~~l~~~~l~~~~---- 153 (245)
+++.+||+|++.|+.... ... ....+ + ....++++++.+||++..
T Consensus 250 ~~~~lTV~EtL~f~a~~~~~~~~~~~~~~~~~~ek~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~L~~lGL~~~~~t~v 329 (1470)
T PLN03140 250 HVGVMTVKETLDFSARCQGVGTRYDLLSELARREKDAGIFPEAEVDLFMKATAMEGVKSSLITDYTLKILGLDICKDTIV 329 (1470)
T ss_pred CCCcCcHHHHHHHHHHhcCCCCcccchhhcCHHHHhccCCCchhhHHHHHHhhhhcchhhHHHHHHHHHcCCccccCcee
Confidence 678899999999852111 000 00000 0 011246789999997631
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecCh-hHHHhhccEEE
Q 035832 154 LDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDL-KEMAALVDHSW 230 (245)
Q Consensus 154 ~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~-~~~~~~~d~v~ 230 (245)
.++.+..|||||||||+||++|+.+|++++|||||+|||+.++.++++.|+++.+ +.|+|+++|++ +++..++|+|+
T Consensus 330 g~~~~rglSGGerkRVsia~aL~~~p~vlllDEPTsGLDs~t~~~i~~~Lr~la~~~g~Tviis~Hqp~~~i~~lfD~vi 409 (1470)
T PLN03140 330 GDEMIRGISGGQKKRVTTGEMIVGPTKTLFMDEISTGLDSSTTYQIVKCLQQIVHLTEATVLMSLLQPAPETFDLFDDII 409 (1470)
T ss_pred CCccccCCCcccceeeeehhhhcCCCcEEEEeCCCcCccHHHHHHHHHHHHHHHHhcCCEEEEEecCCCHHHHHHhheEE
Confidence 2567789999999999999999999999999999999999999999999999963 58999999986 57889999999
Q ss_pred EEeCCeEEEec
Q 035832 231 RMDMGGFLVEQ 241 (245)
Q Consensus 231 ~l~~G~i~~~~ 241 (245)
+|++|+++..+
T Consensus 410 lL~~G~ivy~G 420 (1470)
T PLN03140 410 LLSEGQIVYQG 420 (1470)
T ss_pred EeeCceEEEeC
Confidence 99999998765
|
|
| >KOG0059 consensus Lipid exporter ABCA1 and related proteins, ABC superfamily [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-40 Score=326.55 Aligned_cols=218 Identities=29% Similarity=0.414 Sum_probs=188.4
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
...+.++|+++.|+.... +++++||.|++||+.|+.|||||||||++++|+|..+|++|+++++|.++..... ...
T Consensus 562 ~~~~~~~~L~k~y~~~~~-Av~~ls~~V~~gecfgLLG~NGAGKtT~f~mltG~~~~t~G~a~i~g~~i~~~~~---~~~ 637 (885)
T KOG0059|consen 562 SSALVLNNLSKVYGGKDG-AVRGLSFAVPPGECFGLLGVNGAGKTTTFKMLTGETKPTSGEALIKGHDITVSTD---FQQ 637 (885)
T ss_pred cceEEEcceeeeecchhh-hhcceEEEecCCceEEEecCCCCCchhhHHHHhCCccCCcceEEEecCccccccc---hhh
Confidence 356999999999976433 8999999999999999999999999999999999999999999999988754221 112
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
.++.+||+||.. .++..+|.+|.+.+.... .+. ......+.++.+++.++|.+. ++++++.+|||+|+|+++|.|
T Consensus 638 ~~~~iGyCPQ~d-~l~~~lT~rEhL~~~arl-rG~--~~~di~~~v~~ll~~~~L~~~-~~~~~~~ySgG~kRkLs~aia 712 (885)
T KOG0059|consen 638 VRKQLGYCPQFD-ALWEELTGREHLEFYARL-RGL--PRSDIGSAIEKLLRLVGLGPY-ANKQVRTYSGGNKRRLSFAIA 712 (885)
T ss_pred hhhhcccCCchh-hhhhhccHHHHHHHHHHH-cCC--ChhHHHHHHHHHHHHcCChhh-hccchhhCCCcchhhHHHHHH
Confidence 367899999996 478889999999875211 111 123445568899999999986 799999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-ceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKE-LTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
++.+|++++|||||+|+||.+++.+|+++.+++++ ++||++||.+++++.+|||+.+|.+|++..-+
T Consensus 713 lig~p~vi~LDEPstGmDP~arr~lW~ii~~~~k~g~aiiLTSHsMeE~EaLCtR~aImv~G~l~ciG 780 (885)
T KOG0059|consen 713 LIGDPSVILLDEPSTGLDPKARRHLWDIIARLRKNGKAIILTSHSMEEAEALCTRTAIMVIGQLRCIG 780 (885)
T ss_pred HhcCCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHHhhhhheeecCeeEEec
Confidence 99999999999999999999999999999999865 59999999999999999999999999997644
|
|
| >COG0488 Uup ATPase components of ABC transporters with duplicated ATPase domains [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.3e-39 Score=302.13 Aligned_cols=198 Identities=31% Similarity=0.415 Sum_probs=172.8
Q ss_pred CCcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCC
Q 035832 13 CDYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPE 92 (245)
Q Consensus 13 ~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 92 (245)
.+.++++++|+++.|+++ +.+++++||.|.+|+.+||+||||+|||||||+|+|...|.+|+|.+.-
T Consensus 317 ~g~~vl~~~~~~~~y~~~-~~l~~~~s~~i~~g~riaiiG~NG~GKSTLlk~l~g~~~~~~G~v~~g~------------ 383 (530)
T COG0488 317 LGKLVLEFENVSKGYDGG-RLLLKDLSFRIDRGDRIAIVGPNGAGKSTLLKLLAGELGPLSGTVKVGE------------ 383 (530)
T ss_pred CCCeeEEEeccccccCCC-ceeecCceEEecCCCEEEEECCCCCCHHHHHHHHhhhcccCCceEEeCC------------
Confidence 456689999999999754 6799999999999999999999999999999999999999999998841
Q ss_pred CCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHH
Q 035832 93 PLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALA 172 (245)
Q Consensus 93 ~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iA 172 (245)
.-++||..|+...+....|+.|++.-..+.. .+..+...|..|++......+++..||||||.|+.||
T Consensus 384 ---~v~igyf~Q~~~~l~~~~t~~d~l~~~~~~~---------~e~~~r~~L~~f~F~~~~~~~~v~~LSGGEk~Rl~La 451 (530)
T COG0488 384 ---TVKIGYFDQHRDELDPDKTVLEELSEGFPDG---------DEQEVRAYLGRFGFTGEDQEKPVGVLSGGEKARLLLA 451 (530)
T ss_pred ---ceEEEEEEehhhhcCccCcHHHHHHhhCccc---------cHHHHHHHHHHcCCChHHHhCchhhcCHhHHHHHHHH
Confidence 2469999999855556678999987642211 1345778899999987667899999999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEE
Q 035832 173 IQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFL 238 (245)
Q Consensus 173 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~ 238 (245)
+.++.+|.+|||||||+.||..+++.+.+.|.++. .|||+||||..++.++|+++|.+++ ++.
T Consensus 452 ~ll~~~pNvLiLDEPTNhLDi~s~~aLe~aL~~f~--Gtvl~VSHDr~Fl~~va~~i~~~~~-~~~ 514 (530)
T COG0488 452 KLLLQPPNLLLLDEPTNHLDIESLEALEEALLDFE--GTVLLVSHDRYFLDRVATRIWLVED-KVE 514 (530)
T ss_pred HHhccCCCEEEEcCCCccCCHHHHHHHHHHHHhCC--CeEEEEeCCHHHHHhhcceEEEEcC-cee
Confidence 99999999999999999999999999999998874 6999999999999999999999997 443
|
|
| >PTZ00243 ABC transporter; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.7e-39 Score=335.28 Aligned_cols=187 Identities=24% Similarity=0.315 Sum_probs=152.3
Q ss_pred cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCC
Q 035832 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFV 111 (245)
Q Consensus 32 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~ 111 (245)
+++|+|+||+|++|++++|+||||||||||+++|+|+++|++|+|.+. ++|||+||+|. + +
T Consensus 673 ~~iL~~isl~i~~G~~~~IiG~nGsGKSTLL~~i~G~~~~~~G~i~~~-----------------~~i~yv~Q~~~-l-~ 733 (1560)
T PTZ00243 673 KVLLRDVSVSVPRGKLTVVLGATGSGKSTLLQSLLSQFEISEGRVWAE-----------------RSIAYVPQQAW-I-M 733 (1560)
T ss_pred ceeEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEEC-----------------CeEEEEeCCCc-c-C
Confidence 468999999999999999999999999999999999999999999762 35999999985 4 4
Q ss_pred cccHHHHHHhcCCCCCCchhHHHHH-HHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCC
Q 035832 112 ADNVLDEVIFGWPRQSGSIQLKEYL-ALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPL 188 (245)
Q Consensus 112 ~~tv~e~l~~~~~~~~~~~~~~~~~-~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPt 188 (245)
..|++||+.++... ......... ...+.+.++.+ |+... .++++.+|||||||||+|||||+.+|+++||||||
T Consensus 734 ~~Tv~enI~~~~~~--~~~~~~~~~~~~~l~~~l~~l~~g~~t~-i~~~g~~LSGGQkqRvaLARAl~~~p~illLDEP~ 810 (1560)
T PTZ00243 734 NATVRGNILFFDEE--DAARLADAVRVSQLEADLAQLGGGLETE-IGEKGVNLSGGQKARVSLARAVYANRDVYLLDDPL 810 (1560)
T ss_pred CCcHHHHHHcCChh--hHHHHHHHHHHhhhHHHHHHhhccchHH-hcCCCCCCCHHHHHHHHHHHHHhcCCCEEEEcCcc
Confidence 67999999986321 000011111 12344456666 66654 58889999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHH-HHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 189 AGLDWKARADVVKLL-KHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 189 s~LD~~~~~~i~~~l-~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
++||+.+.+.+++.+ ....+++|+|++||+++.+ ..||++++|++|+++..+
T Consensus 811 saLD~~~~~~i~~~~~~~~~~~~TvIlvTH~~~~~-~~ad~ii~l~~G~i~~~G 863 (1560)
T PTZ00243 811 SALDAHVGERVVEECFLGALAGKTRVLATHQVHVV-PRADYVVALGDGRVEFSG 863 (1560)
T ss_pred ccCCHHHHHHHHHHHHHHhhCCCEEEEEeCCHHHH-HhCCEEEEEECCEEEEec
Confidence 999999999888744 3333578999999999987 579999999999997654
|
|
| >cd03270 ABC_UvrA_I The excision repair protein UvrA domain I; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.4e-39 Score=271.01 Aligned_cols=199 Identities=23% Similarity=0.243 Sum_probs=137.4
Q ss_pred ccceeeeeeEEEcCCCEEEEECCCCCcHHHHH-HHHhCCCCCCcceEEEcC-------ccCCCCCCCCCCCCCCCcEEEE
Q 035832 31 QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLL-QLLAGLSKPTSGSINIRG-------YNNDGEPNNSPEPLPPEKVGIV 102 (245)
Q Consensus 31 ~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl-~~l~Gl~~p~~G~i~~~g-------~~~~~~~~~~~~~~~~~~i~~v 102 (245)
...+|+++||+|++||+++|+||||||||||+ ..+. .+|++.+.. ..+................++.
T Consensus 7 ~~~~l~~vsl~i~~Ge~~~l~G~sGsGKSTL~~~~i~-----~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (226)
T cd03270 7 REHNLKNVDVDIPRNKLVVITGVSGSGKSSLAFDTIY-----AEGQRRYVESLSAYARQFLGQMDKPDVDSIEGLSPAIA 81 (226)
T ss_pred hhhccccceeecCCCcEEEEEcCCCCCHHHHHHHHHH-----HHHHHHHhhcccchhhhhhcccCccccccccCCCceEE
Confidence 45799999999999999999999999999995 4443 234432210 0000000000001112235566
Q ss_pred ecCCCCCC-CcccHH---HHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhC
Q 035832 103 FQFPERYF-VADNVL---DEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQV 178 (245)
Q Consensus 103 ~Q~~~~~~-~~~tv~---e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~ 178 (245)
+|++.... +..++. +...+. .... .......+ .++++.+++.+...++++.+|||||||||+|||||+.+
T Consensus 82 ~~~~~~~~~~~~~v~~~~~~~~~~-~~~~----~~~~~~~~-~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~laral~~~ 155 (226)
T cd03270 82 IDQKTTSRNPRSTVGTVTEIYDYL-RLLF----ARVGIRER-LGFLVDVGLGYLTLSRSAPTLSGGEAQRIRLATQIGSG 155 (226)
T ss_pred ecCCCCCCCCCccHHHHHHHHHHH-HHHh----hhhhHHHH-HHHHHHCCCCcccccCccCcCCHHHHHHHHHHHHHHhC
Confidence 66553222 222432 222111 0000 01111222 46789999976336999999999999999999999999
Q ss_pred C--CEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEE------eCCeEEEec
Q 035832 179 P--DLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRM------DMGGFLVEQ 241 (245)
Q Consensus 179 p--~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l------~~G~i~~~~ 241 (245)
| ++|||||||++||+.++..+.++|+++++ +.|||++|||++++ .+||++++| ++|+|+.++
T Consensus 156 p~~~llllDEPt~gLD~~~~~~l~~~l~~~~~~g~tii~itH~~~~~-~~~d~i~~l~~~~~~~~G~iv~~g 226 (226)
T cd03270 156 LTGVLYVLDEPSIGLHPRDNDRLIETLKRLRDLGNTVLVVEHDEDTI-RAADHVIDIGPGAGVHGGEIVAQG 226 (226)
T ss_pred CCCCEEEEeCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEEeCHHHH-HhCCEEEEeCCCccccCCEEEecC
Confidence 8 59999999999999999999999999864 68999999999987 599999999 999998753
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG4778 PhnL ABC-type phosphonate transport system, ATPase component [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2e-40 Score=262.67 Aligned_cols=215 Identities=26% Similarity=0.313 Sum_probs=172.6
Q ss_pred ceEEEEeEEEECC-----CCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccC----CCC
Q 035832 16 SCLEVRDVSYRPP-----GTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNN----DGE 86 (245)
Q Consensus 16 ~~l~~~~l~~~y~-----~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~----~~~ 86 (245)
..|.++|++|+|- +-..++++++||+++.||+++|=||||||||||||+|.|-+.|++|+|++....- ...
T Consensus 3 ~~l~v~~~~KtFtlH~q~Gi~LpV~~~vslsV~aGECvvL~G~SG~GKStllr~LYaNY~~d~G~I~v~H~g~~vdl~~a 82 (235)
T COG4778 3 TPLNVSNVSKTFTLHQQGGVRLPVLRNVSLSVNAGECVVLHGPSGSGKSTLLRSLYANYLPDEGQILVRHEGEWVDLVTA 82 (235)
T ss_pred ceeeeecchhheEeeecCCEEeeeeeceeEEecCccEEEeeCCCCCcHHHHHHHHHhccCCCCceEEEEeCcchhhhhcc
Confidence 3589999998873 2245799999999999999999999999999999999999999999999865421 111
Q ss_pred CCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHH
Q 035832 87 PNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYK 166 (245)
Q Consensus 87 ~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqk 166 (245)
.....-..+++.||||.|.-. ..+..+..|.++-+.... .. ..+..+.++..++.++++.+..+.-.|.++|||||
T Consensus 83 ~pr~vl~vRr~TiGyVSQFLR-viPRV~aLdVvaePll~~--gv-~~~~a~~~a~~Ll~rLnlperLW~LaPaTFSGGEq 158 (235)
T COG4778 83 EPREVLEVRRTTIGYVSQFLR-VIPRVSALDVVAEPLLAR--GV-PREVARAKAADLLTRLNLPERLWSLAPATFSGGEQ 158 (235)
T ss_pred ChHHHHHHHHhhhHHHHHHHH-hccCcchHHHHHhHHHHc--CC-CHHHHHHHHHHHHHHcCCCHHHhcCCCcccCCchh
Confidence 111112234667999999853 455556666555432111 11 13344567889999999998778999999999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeC
Q 035832 167 RRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDM 234 (245)
Q Consensus 167 qrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~ 234 (245)
|||.|||.++.+-++|+|||||++||..+++.+.++|.+.+. +.++|=|-||-+.=+..|||++-+..
T Consensus 159 QRVNIaRgfivd~pILLLDEPTasLDa~Nr~vVveli~e~Ka~GaAlvGIFHDeevre~vadR~~~~~~ 227 (235)
T COG4778 159 QRVNIARGFIVDYPILLLDEPTASLDATNRAVVVELIREAKARGAALVGIFHDEEVREAVADRLLDVSA 227 (235)
T ss_pred eehhhhhhhhccCceEEecCCcccccccchHHHHHHHHHHHhcCceEEEeeccHHHHHHHhhheeeccc
Confidence 999999999999999999999999999999999999999874 68999999998887889999988753
|
|
| >COG5265 ATM1 ABC-type transport system involved in Fe-S cluster assembly, permease and ATPase components [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.4e-40 Score=291.38 Aligned_cols=215 Identities=28% Similarity=0.391 Sum_probs=175.7
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
+.+++++|.|.. .+++|+++||++++|+.++++||+|+||||++++|..++++++|.|.++|+++.... ....|+
T Consensus 263 v~F~~V~F~y~~-~r~iL~~isf~i~~g~tvAiVg~SG~gKsTI~rllfRFyD~~sG~I~id~qdir~vt----q~slR~ 337 (497)
T COG5265 263 VAFINVSFAYDP-RRPILNGISFTIPLGKTVAIVGESGAGKSTILRLLFRFYDVNSGSITIDGQDIRDVT----QQSLRR 337 (497)
T ss_pred EEEEEEEeeccc-cchhhcCccccccCccEEEEEeCCCCcHHHHHHHHHHHhCCcCceEEEcchhHHHhH----HHHHHH
Confidence 789999999976 478999999999999999999999999999999999999999999999999985422 123467
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
-||+|||+.. ++..|++.|+.++.+...............+...++.+ |.+.. ...+.-.|||||||||+|||++
T Consensus 338 aIg~VPQDtv--LFNDti~yni~ygr~~at~eev~aaa~~aqi~~fi~~lP~gy~t~-VgerglklSggekqrvaiar~i 414 (497)
T COG5265 338 AIGIVPQDTV--LFNDTIAYNIKYGRPDATAEEVGAAAEAAQIHDFIQSLPEGYDTG-VGERGLKLSGGEKQRVAIARTI 414 (497)
T ss_pred HhCcCcccce--ehhhhHHHHHhccCccccHHHHHHHHHHhhhhHHHHhCchhhhcc-cchheeeccCchHHHHHHHHHH
Confidence 8999999973 45789999999985543221111111122233444443 33322 3445557999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+.+|++|+|||.||+||..+.+++...|++...+.|-+++.|.+..+. -+|.+++|++|+|++.+
T Consensus 415 lk~p~il~~deatsaldt~te~~iq~~l~~~~~~rttlviahrlsti~-~adeiivl~~g~i~erg 479 (497)
T COG5265 415 LKNPPILILDEATSALDTHTEQAIQAALREVSAGRTTLVIAHRLSTII-DADEIIVLDNGRIVERG 479 (497)
T ss_pred hcCCCEEEEehhhhHhhhhHHHHHHHHHHHHhCCCeEEEEeehhhhcc-CCceEEEeeCCEEEecC
Confidence 999999999999999999999999999999998899999999999876 48999999999998765
|
|
| >KOG0061 consensus Transporter, ABC superfamily (Breast cancer resistance protein) [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.1e-39 Score=306.85 Aligned_cols=217 Identities=30% Similarity=0.354 Sum_probs=183.0
Q ss_pred eEEEEeEEEECCCC---ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---CcceEEEcCccCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGT---QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP---TSGSINIRGYNNDGEPNNS 90 (245)
Q Consensus 17 ~l~~~~l~~~y~~~---~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~ 90 (245)
.+.++|++....+. .+.+|++||.++++||+.||+|||||||||||++|+|-... .+|+|.+||+....
T Consensus 25 ~~~~~~~~~~~~~~~~~~k~iL~~vsg~~~~Gel~AimG~SGsGKtTLL~~Lagr~~~~~~~~G~ilvNG~~~~~----- 99 (613)
T KOG0061|consen 25 KLSFRNLTLSSKEKSKKTKTILKGVSGTAKPGELLAIMGPSGSGKTTLLNALAGRLNGGLKLSGEILLNGRPRDS----- 99 (613)
T ss_pred eeEEEEEEEEecCCCCccceeeeCcEEEEecCeEEEEECCCCCCHHHHHHHHhccccCCCcceEEEEECCccCch-----
Confidence 47888988877543 36799999999999999999999999999999999999975 69999999965322
Q ss_pred CCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCC-----CCChHH
Q 035832 91 PEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPH-----SLSGGY 165 (245)
Q Consensus 91 ~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-----~LSgGq 165 (245)
+..++..|||.|+. .+++.+||+|.+.+.............+.+++++++++.+||.+. .|..++ .+||||
T Consensus 100 --~~~~~~s~yV~QdD-~l~~~LTV~EtL~f~A~lrlp~~~~~~~k~~~V~~vi~~LgL~~~-~~t~ig~~~~rgiSGGE 175 (613)
T KOG0061|consen 100 --RSFRKISGYVQQDD-VLLPTLTVRETLRFSALLRLPSSLSKEEKRERVEEVISELGLEKC-ADTLIGNPGIRGLSGGE 175 (613)
T ss_pred --hhhhheeEEEcccc-cccccccHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHHcCChhh-ccceecCCCCCccccch
Confidence 12467899999996 478899999999986322111111234566789999999999865 677776 599999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChh-HHHhhccEEEEEeCCeEEEecc
Q 035832 166 KRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLK-EMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 166 kqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~-~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
||||+||.-++++|.+|++||||+|||..+..++++.|+++++ ++|||++-|.+. .+.+..|++++|.+|+++..+.
T Consensus 176 rkRvsia~Ell~~P~iLflDEPTSGLDS~sA~~vv~~Lk~lA~~grtVi~tIHQPss~lf~lFD~l~lLs~G~~vy~G~ 254 (613)
T KOG0061|consen 176 RKRVSIALELLTDPSILFLDEPTSGLDSFSALQVVQLLKRLARSGRTVICTIHQPSSELFELFDKLLLLSEGEVVYSGS 254 (613)
T ss_pred hhHHHHHHHHHcCCCEEEecCCCCCcchhhHHHHHHHHHHHHhCCCEEEEEEeCCcHHHHHHHhHhhhhcCCcEEEecC
Confidence 9999999999999999999999999999999999999999975 699999999975 4677899999999999998764
|
|
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.4e-37 Score=309.03 Aligned_cols=217 Identities=24% Similarity=0.293 Sum_probs=175.1
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.|+++|++.+|..+...+|+||||+|++||.+||+|+.|||||||+.+|-++..|.+|+|.+||.|+..... ..+|
T Consensus 1138 ~I~f~~~~~RYrp~lp~VLk~is~~I~p~eKVGIVGRTGaGKSSL~~aLFRl~e~~~G~I~IDgvdI~~igL----~dLR 1213 (1381)
T KOG0054|consen 1138 EIEFEDLSLRYRPNLPLVLKGISFTIKPGEKVGIVGRTGAGKSSLILALFRLVEPAEGEILIDGVDISKIGL----HDLR 1213 (1381)
T ss_pred eEEEEEeEEEeCCCCcchhcCceEEEcCCceEEEeCCCCCCHHHHHHHHHHhcCccCCeEEEcCeecccccH----HHHH
Confidence 499999999997665679999999999999999999999999999999999999999999999999976543 2357
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
++++++||+|. ++..|++.|+.=. .......-.+...+..+.+.++.+ ||+.. ...-..++|-||||.++||||
T Consensus 1214 srlsIIPQdPv--LFsGTvR~NLDPf-~e~sD~~IW~ALe~~~Lk~~v~~~p~~Ld~~-v~egG~N~SvGQRQLlCLARA 1289 (1381)
T KOG0054|consen 1214 SRLSIIPQDPV--LFSGTVRFNLDPF-DEYSDDEIWEALERCQLKDVVSSLPGGLDSE-VSEGGENFSVGQRQLLCLARA 1289 (1381)
T ss_pred hcCeeeCCCCc--eecCccccccCcc-cccCHHHHHHHHHHhChHHHHhhCCcCCCce-ecCCCccCChHHHHHHHHHHH
Confidence 89999999994 4578999999621 110000000111112233333332 34332 344557899999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
|+++++||+|||+|+++|+++-..+.+.|++--+++|||.|.|+++.+.. ||||+||++|++++-+.
T Consensus 1290 LLr~skILvLDEATAsVD~~TD~lIQ~tIR~~F~dcTVltIAHRl~TVmd-~DrVlVld~G~v~Efds 1356 (1381)
T KOG0054|consen 1290 LLRKSKILVLDEATASVDPETDALIQKTIREEFKDCTVLTIAHRLNTVMD-SDRVLVLDAGRVVEFDS 1356 (1381)
T ss_pred HhccCCEEEEecccccCChHHHHHHHHHHHHHhcCCeEEEEeeccchhhh-cCeEEEeeCCeEeecCC
Confidence 99999999999999999999999999999998788999999999999986 79999999999976543
|
|
| >cd03278 ABC_SMC_barmotin Barmotin is a tight junction-associated protein expressed in rat epithelial cells which is thought to have an important regulatory role in tight junction barrier function | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-37 Score=258.28 Aligned_cols=165 Identities=23% Similarity=0.321 Sum_probs=132.8
Q ss_pred e-eeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCc---------ceEEEcCccCCCCCCCCCCCCCCCcEEEEec
Q 035832 35 L-NGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTS---------GSINIRGYNNDGEPNNSPEPLPPEKVGIVFQ 104 (245)
Q Consensus 35 l-~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~---------G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q 104 (245)
+ ++++|++++| +++|+||||||||||+++|+|+.+|.. |++.+.|++... ...+++|+|+||
T Consensus 12 ~~~~~~l~~~~g-~~~i~G~nGsGKStll~al~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~v~~vfq 83 (197)
T cd03278 12 FADKTTIPFPPG-LTAIVGPNGSGKSNIIDAIRWVLGEQSAKSLRGEKMSDVIFAGSETRK-------PANFAEVTLTFD 83 (197)
T ss_pred cCCCeeeecCCC-cEEEECCCCCCHHHHHHHHHHHhccccchhhcccCHHHHhccCCCCCC-------CCceEEEEEEEE
Confidence 5 7889999999 999999999999999999999987653 457666655421 112468999999
Q ss_pred CCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh----hCCC
Q 035832 105 FPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV----QVPD 180 (245)
Q Consensus 105 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~----~~p~ 180 (245)
++..+ ++.. . ..++.++++. .+. .++++.+||||||||++||++++ .+|+
T Consensus 84 ~~~~~-----------~~~~-----~------~~~~~~~l~~---~~~-~~~~~~~LS~G~kqrl~la~~l~~~~~~~~~ 137 (197)
T cd03278 84 NSDGR-----------YSII-----S------QGDVSEIIEA---PGK-KVQRLSLLSGGEKALTALALLFAIFRVRPSP 137 (197)
T ss_pred cCCCc-----------eeEE-----e------hhhHHHHHhC---CCc-cccchhhcCHHHHHHHHHHHHHHHhccCCCC
Confidence 98633 1100 0 1234555655 343 58899999999999999999997 4669
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeC
Q 035832 181 LLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDM 234 (245)
Q Consensus 181 llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~ 234 (245)
++||||||++||+..+..+.+.|+++.++.|||++||+++.+ .+||+++.|..
T Consensus 138 illlDEP~~~LD~~~~~~l~~~l~~~~~~~tiIiitH~~~~~-~~~d~v~~~~~ 190 (197)
T cd03278 138 FCVLDEVDAALDDANVERFARLLKEFSKETQFIVITHRKGTM-EAADRLYGVTM 190 (197)
T ss_pred EEEEeCCcccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHH-hhcceEEEEEe
Confidence 999999999999999999999999987678999999999976 68999999874
|
Barmotin belongs to the SMC protein family. SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains. Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, w |
| >KOG0054 consensus Multidrug resistance-associated protein/mitoxantrone resistance protein, ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.1e-36 Score=301.09 Aligned_cols=200 Identities=24% Similarity=0.383 Sum_probs=165.6
Q ss_pred CCcceEEEEeEEEECCC-CccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCC
Q 035832 13 CDYSCLEVRDVSYRPPG-TQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSP 91 (245)
Q Consensus 13 ~~~~~l~~~~l~~~y~~-~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 91 (245)
.+...++++|.+++.++ +..+.|+||||+|++|+.+||+||-|||||+||.+|.|.++..+|+|.++|
T Consensus 514 ~~~~~i~i~~~sfsW~~~~~~~tL~dIn~~i~~G~lvaVvG~vGsGKSSLL~AiLGEm~~~sG~v~v~g----------- 582 (1381)
T KOG0054|consen 514 AGENAIEIKNGSFSWDSESPEPTLKDINFEIKKGQLVAVVGPVGSGKSSLLSAILGEMPKLSGSVAVNG----------- 582 (1381)
T ss_pred CCCceEEEeeeeEecCCCCCcccccceeEEecCCCEEEEECCCCCCHHHHHHHHhcCcccccceEEEcC-----------
Confidence 34557999999999864 234589999999999999999999999999999999999999999999864
Q ss_pred CCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCc----------cCCCCCCCC
Q 035832 92 EPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGT----------SLDKDPHSL 161 (245)
Q Consensus 92 ~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~L 161 (245)
.++|++|.|. +.+.||+|||.||.+. .+++.++.++.+.|+.. ....+.-+|
T Consensus 583 ------siaYv~Q~pW--I~ngTvreNILFG~~~----------d~~rY~~Vi~aC~L~~Dle~Lp~GD~TeIGErGinL 644 (1381)
T KOG0054|consen 583 ------SVAYVPQQPW--IQNGTVRENILFGSPY----------DEERYDKVIKACALKKDLEILPFGDLTEIGERGINL 644 (1381)
T ss_pred ------eEEEeccccH--hhCCcHHHhhhcCccc----------cHHHHHHHHHHccCHhHHhhcCCCCcceecCCccCC
Confidence 3899999994 4578999999998432 12234444555544321 235677899
Q ss_pred ChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH-hhcCceEEEEecChhHHHhhccEEEEEeCCeEEEe
Q 035832 162 SGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKH-LKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240 (245)
Q Consensus 162 SgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~-l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~ 240 (245)
|||||||++||||+.++++++|||.|+|++|.+..+.+++..-. +-+++|+|++||.++.+ ..||.|++|++|+|...
T Consensus 645 SGGQKqRIsLARAVY~~adIYLLDDplSAVDahvg~~if~~ci~~~L~~KT~ILVTHql~~L-~~ad~Iivl~~G~I~~~ 723 (1381)
T KOG0054|consen 645 SGGQKQRISLARAVYQDADIYLLDDPLSAVDAHVGKHIFEECIRGLLRGKTVILVTHQLQFL-PHADQIIVLKDGKIVES 723 (1381)
T ss_pred cHhHHHHHHHHHHHhccCCEEEEcCcchhhhHhhhHHHHHHHHHhhhcCCEEEEEeCchhhh-hhCCEEEEecCCeEecc
Confidence 99999999999999999999999999999999999998876553 34679999999998865 57999999999999876
Q ss_pred cc
Q 035832 241 QR 242 (245)
Q Consensus 241 ~~ 242 (245)
++
T Consensus 724 Gt 725 (1381)
T KOG0054|consen 724 GT 725 (1381)
T ss_pred cC
Confidence 53
|
|
| >PF00005 ABC_tran: ABC transporter This structure is on hold until Dec 1999; InterPro: IPR003439 ABC transporters belong to the ATP-Binding Cassette (ABC) superfamily, which uses the hydrolysis of ATP to energise diverse biological systems | Back alignment and domain information |
|---|
Probab=100.00 E-value=3.4e-37 Score=240.79 Aligned_cols=134 Identities=37% Similarity=0.510 Sum_probs=111.1
Q ss_pred eeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCccc
Q 035832 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADN 114 (245)
Q Consensus 35 l~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~t 114 (245)
|+|+||+|++|++++|+||||||||||+++|+|+.+|++|+|.++|+++.... ....++.++|++|++. ++...|
T Consensus 1 L~~v~~~i~~g~~~~i~G~nGsGKStLl~~l~g~~~~~~G~i~~~~~~~~~~~----~~~~~~~i~~~~~~~~-~~~~~t 75 (137)
T PF00005_consen 1 LKNVSLEIKPGEIVAIVGPNGSGKSTLLKALAGLLPPDSGSILINGKDISDID----IEELRRRIGYVPQDPQ-LFPGLT 75 (137)
T ss_dssp EEEEEEEEETTSEEEEEESTTSSHHHHHHHHTTSSHESEEEEEETTEEGTTSH----HHHHHHTEEEEESSHC-HHTTSB
T ss_pred CCceEEEEcCCCEEEEEccCCCccccceeeecccccccccccccccccccccc----cccccccccccccccc-cccccc
Confidence 78999999999999999999999999999999999999999999999886411 1123568999999963 667778
Q ss_pred HHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCc---cCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 035832 115 VLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGT---SLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLA 189 (245)
Q Consensus 115 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~---~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts 189 (245)
+.+| ....++.++++.+++.+. ..++++.+||+|||||++|||||+.+|+++|||||||
T Consensus 76 v~~~----------------~~~~~~~~~l~~l~~~~~~~~~~~~~~~~LS~Ge~~rl~la~al~~~~~llllDEPt~ 137 (137)
T PF00005_consen 76 VREN----------------ESDERIEEVLKKLGLEDLLDRKIGQRASSLSGGEKQRLALARALLKNPKLLLLDEPTN 137 (137)
T ss_dssp HHHH----------------HHHHHHHHHHHHTTHGGGTGSBGTSCGGGSCHHHHHHHHHHHHHHTTSSEEEEESTTT
T ss_pred cccc----------------cccccccccccccccccccccccccccchhhHHHHHHHHHHHHHHcCCCEEEEeCCCC
Confidence 9888 112246667777776542 2344559999999999999999999999999999997
|
ABC transporters minimally consist of two conserved regions: a highly conserved ATP binding cassette (ABC) and a less conserved transmembrane domain (TMD). These can be found on the same protein or on two different ones. Most ABC transporters function as a dimer and therefore are constituted of four domains, two ABC modules and two TMDs. ABC transporters are involved in the export or import of a wide variety of substrates ranging from small ions to macromolecules. The major function of ABC import systems is to provide essential nutrients to bacteria. They are found only in prokaryotes and their four constitutive domains are usually encoded by independent polypeptides (two ABC proteins and two TMD proteins). Prokaryotic importers require additional extracytoplasmic binding proteins (one or more per systems) for function. In contrast, export systems are involved in the extrusion of noxious substances, the export of extracellular toxins and the targeting of membrane components. They are found in all living organisms and in general the TMD is fused to the ABC module in a variety of combinations. Some eukaryotic exporters encode the four domains on the same polypeptide chain []. The ABC module (approximately two hundred amino acid residues) is known to bind and hydrolyse ATP, thereby coupling transport to ATP hydrolysis in a large number of biological processes. The cassette is duplicated in several subfamilies. Its primary sequence is highly conserved, displaying a typical phosphate-binding loop: Walker A, and a magnesium binding site: Walker B. Besides these two regions, three other conserved motifs are present in the ABC cassette: the switch region which contains a histidine loop, postulated to polarise the attaching water molecule for hydrolysis, the signature conserved motif (LSGGQ) specific to the ABC transporter, and the Q-motif (between Walker A and the signature), which interacts with the gamma phosphate through a water bond. The Walker A, Walker B, Q-loop and switch region form the nucleotide binding site [, , ]. The 3D structure of a monomeric ABC module adopts a stubby L-shape with two distinct arms. ArmI (mainly beta-strand) contains Walker A and Walker B. The important residues for ATP hydrolysis and/or binding are located in the P-loop. The ATP-binding pocket is located at the extremity of armI. The perpendicular armII contains mostly the alpha helical subdomain with the signature motif. It only seems to be required for structural integrity of the ABC module. ArmII is in direct contact with the TMD. The hinge between armI and armII contains both the histidine loop and the Q-loop, making contact with the gamma phosphate of the ATP molecule. ATP hydrolysis leads to a conformational change that could facilitate ADP release. In the dimer the two ABC cassettes contact each other through hydrophobic interactions at the antiparallel beta-sheet of armI by a two-fold axis [, , , , , ]. The ATP-Binding Cassette (ABC) superfamily forms one of the largest of all protein families with a diversity of physiological functions []. Several studies have shown that there is a correlation between the functional characterisation and the phylogenetic classification of the ABC cassette [, ]. More than 50 subfamilies have been described based on a phylogenetic and functional classification [, , ]; (for further information see http://www.tcdb.org/tcdb/index.php?tc=3.A.1). On the basis of sequence similarities a family of related ATP-binding proteins has been characterised [, , , , ]. The proteins belonging to this family also contain one or two copies of the 'A' consensus sequence [] or the 'P-loop' [] (see IPR001687 from INTERPRO).; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NHB_A 3NH9_A 3NHA_A 3NH6_A 1VCI_A 1V43_A 2YZ2_B 2PMK_A 2FFA_A 1XEF_D .... |
| >cd03271 ABC_UvrA_II The excision repair protein UvrA domain II; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-35 Score=255.60 Aligned_cols=198 Identities=23% Similarity=0.282 Sum_probs=145.8
Q ss_pred eeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHh--------CC--CCCCcc-----------eEEEcCccCCCCCCCCCC
Q 035832 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLA--------GL--SKPTSG-----------SINIRGYNNDGEPNNSPE 92 (245)
Q Consensus 34 il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~--------Gl--~~p~~G-----------~i~~~g~~~~~~~~~~~~ 92 (245)
.|+|+|++|+.|.+++|+|+||||||||++.+. +. ..|..+ -|.++..++...++....
T Consensus 10 nl~~v~~~ip~g~~~~vtGvSGsGKStL~~~~l~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~vdq~pi~~~~rs~~~ 89 (261)
T cd03271 10 NLKNIDVDIPLGVLTCVTGVSGSGKSSLINDTLYPALARRLHLKKEQPGNHDRIEGLEHIDKVIVIDQSPIGRTPRSNPA 89 (261)
T ss_pred cCCCceeeccCCcEEEEECCCCCchHHHHHHHHHHHHHHHhcccccCCCcccccccccccCceEEecCCcCCCCCCCcHH
Confidence 599999999999999999999999999998652 11 012111 356666666443322110
Q ss_pred CC-------------------CC---CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCC
Q 035832 93 PL-------------------PP---EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLD 150 (245)
Q Consensus 93 ~~-------------------~~---~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~ 150 (245)
.+ +. ..+.|..++.. .+..+|+.|++.|.... . ...+..++++.+||.
T Consensus 90 ty~~~~~~ir~~fC~~C~G~r~~~~~l~~~~~g~~i~-~v~~ltv~e~~~~~~~~-------~--~~~~~~~~L~~vgL~ 159 (261)
T cd03271 90 TYTGVFDEIRELFCEVCKGKRYNRETLEVRYKGKSIA-DVLDMTVEEALEFFENI-------P--KIARKLQTLCDVGLG 159 (261)
T ss_pred HHHHHHHHHHHhcCccccccccCHHHHhcCcCCCCHH-HHhcCCHHHHHHHHHhh-------h--hHHHHHHHHHHcCCc
Confidence 00 00 01333333332 23456777777663110 1 123466789999998
Q ss_pred CccCCCCCCCCChHHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhc
Q 035832 151 GTSLDKDPHSLSGGYKRRLALAIQLVQV---PDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALV 226 (245)
Q Consensus 151 ~~~~~~~~~~LSgGqkqrv~iAral~~~---p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~ 226 (245)
...+++++.+|||||+||++|||+|+.+ |+++||||||+|||+..++.+++.|+++.+ +.|||++||+++++. .|
T Consensus 160 ~l~l~~~~~~LSgGe~QRl~LAraL~~~~~~p~lllLDEPtsgLD~~~~~~l~~~L~~l~~~g~tvIiitH~~~~i~-~a 238 (261)
T cd03271 160 YIKLGQPATTLSGGEAQRIKLAKELSKRSTGKTLYILDEPTTGLHFHDVKKLLEVLQRLVDKGNTVVVIEHNLDVIK-CA 238 (261)
T ss_pred hhhhcCccccCCHHHHHHHHHHHHHhcCCCCCcEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHH-hC
Confidence 6336999999999999999999999996 799999999999999999999999999874 689999999999885 79
Q ss_pred cEEEEE------eCCeEEEecc
Q 035832 227 DHSWRM------DMGGFLVEQR 242 (245)
Q Consensus 227 d~v~~l------~~G~i~~~~~ 242 (245)
|+++.| ++|+++.++.
T Consensus 239 D~ii~Lgp~~g~~~G~iv~~Gt 260 (261)
T cd03271 239 DWIIDLGPEGGDGGGQVVASGT 260 (261)
T ss_pred CEEEEecCCcCCCCCEEEEeCC
Confidence 999999 7899987654
|
Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins and UvrB having one ATP binding site that is structurally related to that of helicases. |
| >COG1129 MglA ABC-type sugar transport system, ATPase component [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.1e-35 Score=272.35 Aligned_cols=220 Identities=26% Similarity=0.328 Sum_probs=184.2
Q ss_pred CCcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCC
Q 035832 13 CDYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPE 92 (245)
Q Consensus 13 ~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 92 (245)
.+.+.++++|++..- .++|+||++++|||+||.|-=|||+|-|+++|.|..++.+|+|.++|+++...+ +.
T Consensus 259 ~~~~~l~v~~l~~~~------~~~dvSf~vr~GEIlGiaGLvGaGRTEl~~~lfG~~~~~~G~i~l~G~~v~~~s---p~ 329 (500)
T COG1129 259 IGEPVLEVRNLSGGG------KVRDVSFTVRAGEILGIAGLVGAGRTELARALFGARPASSGEILLDGKPVRIRS---PR 329 (500)
T ss_pred CCCcEEEEecCCCCC------ceeCceeEEeCCcEEEEeccccCCHHHHHHHHhCCCcCCCceEEECCEEccCCC---HH
Confidence 356789999997532 389999999999999999999999999999999999999999999999875432 22
Q ss_pred CCCCCcEEEEecCCC--CCCCcccHHHHHHhc-CCCCCCc-hhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHH
Q 035832 93 PLPPEKVGIVFQFPE--RYFVADNVLDEVIFG-WPRQSGS-IQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRR 168 (245)
Q Consensus 93 ~~~~~~i~~v~Q~~~--~~~~~~tv~e~l~~~-~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqr 168 (245)
...+..|+|||.+-. -++..+++.+|+.+. +...... .......+..++++.+.+++.....+.++.+||||.|||
T Consensus 330 ~Ai~~Gi~~v~EDRk~~Gl~l~~sI~~Ni~l~~l~~~~~~~~i~~~~e~~~~~~~~~~l~Ik~~s~~~~v~~LSGGNQQK 409 (500)
T COG1129 330 DAIKAGIAYVPEDRKSEGLVLDMSIAENITLASLRRFSRRGLIDRRKERALAERYIRRLRIKTPSPEQPIGTLSGGNQQK 409 (500)
T ss_pred HHHHcCCEeCCcccccCcCcCCCcHHHheehHhhhhhccccccChHHHHHHHHHHHHhcCcccCCccchhhcCCchhhhh
Confidence 234567999999852 256788999999876 2111111 112333455678889999987655688999999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 169 LALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 169 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|.|||.|+.+|++|||||||.|+|.-++.+++++|+++++ +++||++|-+++++..+||||++|++|+++.+-
T Consensus 410 VvlarwL~~~p~vLilDEPTRGIDVGAK~eIy~li~~lA~~G~ail~iSSElpEll~~~DRIlVm~~Gri~~e~ 483 (500)
T COG1129 410 VVLARWLATDPKVLILDEPTRGIDVGAKAEIYRLIRELAAEGKAILMISSELPELLGLSDRILVMREGRIVGEL 483 (500)
T ss_pred HHHHHHHhcCCCEEEECCCCcCcccchHHHHHHHHHHHHHCCCEEEEEeCChHHHHhhCCEEEEEECCEEEEEe
Confidence 9999999999999999999999999999999999999975 699999999999999999999999999998753
|
|
| >cd03273 ABC_SMC2_euk Eukaryotic SMC2 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-35 Score=253.16 Aligned_cols=185 Identities=22% Similarity=0.249 Sum_probs=139.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCC-cceEEEcCc-cCCCCCCCCCCCCCCCcEEEEecCCCC--------CCCccc
Q 035832 45 KSFGLIFGRSGSGKTTLLQLLAGLSKPT-SGSINIRGY-NNDGEPNNSPEPLPPEKVGIVFQFPER--------YFVADN 114 (245)
Q Consensus 45 Ge~~~liG~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~-~~~~~~~~~~~~~~~~~i~~v~Q~~~~--------~~~~~t 114 (245)
..+++|+||||||||||+++|++++.+. .|++++.+. ++-... ........+|+++||++.. ..+..|
T Consensus 25 ~~~~~IvG~NGsGKStll~Ai~~ll~~~~~~~~r~~~~~~li~~~--~~~~~~~~~v~~~fq~~~~~~~~~~~~~~~~lt 102 (251)
T cd03273 25 PQFNAITGLNGSGKSNILDAICFVLGITNLSTVRASNLQDLIYKR--GQAGITKASVTIVFDNSDKSQSPIGFENYPEIT 102 (251)
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHhcccccccccccCHHHHhhcC--CCCCCcEEEEEEEEEcCCcccCcccccCCceEE
Confidence 5699999999999999999999999886 468888776 432111 1111234589999999631 234578
Q ss_pred HHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC-------------------ccCCCCCCCCChHHHHHHHHHHHH
Q 035832 115 VLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG-------------------TSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 115 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~-------------------~~~~~~~~~LSgGqkqrv~iAral 175 (245)
|.+++..+..... ..........++.++++.+++.. ...++++.+||+|||||++|||||
T Consensus 103 V~r~I~~~~~~~~-~in~~~~~~~~v~~~L~~vgL~~~~~~~~i~Qg~v~~~~~~~~~~~~~~~~lS~G~~qr~~la~al 181 (251)
T cd03273 103 VTRQIVLGGTNKY-LINGHRAQQQRVQDLFQSVQLNVNNPHFLIMQGRITKVLNMGGVWKESLTELSGGQRSLVALSLIL 181 (251)
T ss_pred EEEEEEcCCceEE-EECCEEeeHHHHHHHHHHcCCCCCCceEEEeehHHHHHHHhHHhhcccccccCHHHHHHHHHHHHH
Confidence 8877765421110 00001122356788899999861 124678999999999999999999
Q ss_pred h----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEe
Q 035832 176 V----QVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMD 233 (245)
Q Consensus 176 ~----~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~ 233 (245)
+ .+|+++|+||||++||+..++.+++.|+++.++.++|++||+.+ +...||+++-+.
T Consensus 182 ~~~~~~~~~illlDEPt~~ld~~~~~~~~~~l~~~~~g~~ii~iSH~~~-~~~~~d~v~~~~ 242 (251)
T cd03273 182 ALLLFKPAPMYILDEVDAALDLSHTQNIGRMIKTHFKGSQFIVVSLKEG-MFNNANVLFRTR 242 (251)
T ss_pred HHhhccCCCEEEEeCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECCHH-HHHhCCEEEEEE
Confidence 8 57899999999999999999999999999877789999999954 566899998775
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03279 ABC_sbcCD SbcCD and other Mre11/Rad50 (MR) complexes are implicated in the metabolism of DNA ends | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.5e-34 Score=242.90 Aligned_cols=194 Identities=19% Similarity=0.174 Sum_probs=139.1
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEc-CCCEEEEECCCCCcHHHHHHHHhCCC-CCCcceEEEcCccCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLP-EKSFGLIFGRSGSGKTTLLQLLAGLS-KPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~-~Ge~~~liG~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
.|+++|+. +|.+. ++++|+.. +|++++|+||||||||||+++|++.+ -+..+....+. ...... ...
T Consensus 5 ~i~l~nf~-~y~~~-----~~i~~~~~~~~~~~~i~G~NGsGKSTll~~i~~~l~g~~~~~~~~~~-~~~~~~----~~~ 73 (213)
T cd03279 5 KLELKNFG-PFREE-----QVIDFTGLDNNGLFLICGPTGAGKSTILDAITYALYGKTPRYGRQEN-LRSVFA----PGE 73 (213)
T ss_pred EEEEECCc-CcCCc-----eEEeCCCCCccCEEEEECCCCCCHHHHHHHheeeEecCccccccchh-HHHHhc----CCC
Confidence 58889988 66431 66777654 58999999999999999999999643 34444444321 000000 112
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
....|+++||++...+ ++..+. +. . .......+ .+...++.+. +++++.+||+||+||++||||
T Consensus 74 ~~~~v~~~f~~~~~~~---~~~r~~--gl-----~---~~~~~~~~--~l~~g~l~~~-l~~~~~~lS~G~~~r~~la~a 137 (213)
T cd03279 74 DTAEVSFTFQLGGKKY---RVERSR--GL-----D---YDQFTRIV--LLPQGEFDRF-LARPVSTLSGGETFLASLSLA 137 (213)
T ss_pred ccEEEEEEEEECCeEE---EEEEec--CC-----C---HHHHHHhh--hhhhcchHHH-hcCCccccCHHHHHHHHHHHH
Confidence 2467999999975322 111110 10 0 11111111 2344455554 688999999999999999999
Q ss_pred Hhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeE
Q 035832 175 LVQ----------VPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGF 237 (245)
Q Consensus 175 l~~----------~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i 237 (245)
|+. +|+++||||||++||+.+++.+.+.|.++++ +.|||++||+++++..+||+++++++|..
T Consensus 138 l~~~p~~~~~~~~~~~~lllDEp~~~lD~~~~~~~~~~l~~~~~~~~tii~itH~~~~~~~~~~~i~~~~~~~~ 211 (213)
T cd03279 138 LALSEVLQNRGGARLEALFIDEGFGTLDPEALEAVATALELIRTENRMVGVISHVEELKERIPQRLEVIKTPGG 211 (213)
T ss_pred HHhHHHhhhccCCCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEECchHHHHhhCcEEEEEecCCC
Confidence 985 5789999999999999999999999999875 68999999999999999999999999864
|
They cleave ends sealed by hairpin structures and are thought to play a role in removing protein bound to DNA termini. |
| >COG4138 BtuD ABC-type cobalamin transport system, ATPase component [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.4e-36 Score=238.12 Aligned_cols=206 Identities=27% Similarity=0.362 Sum_probs=172.3
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
.+++++|+...- + |-.+|.++..||++-+|||||||||||+-.++|+. |.+|+|.++|.++...+.. ..
T Consensus 2 ~l~qln~v~~~t----R--L~plS~qv~aGe~~HliGPNGaGKSTLLA~lAGm~-~~sGsi~~~G~~l~~~~~~----eL 70 (248)
T COG4138 2 ILMQLNDVAEST----R--LGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGSGSIQFAGQPLEAWSAT----EL 70 (248)
T ss_pred ceeeeccccccc----c--ccccccccccceEEEEECCCCccHHHHHHHHhCCC-CCCceEEECCcchhHHhHh----HH
Confidence 468899987643 2 78899999999999999999999999999999998 5699999999987543221 23
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
.++-+|+.|+.. ..+.+-|+..+.+.-+ .+.....+.++...+++++. +.+..++|||||.|||-+|..+
T Consensus 71 ArhRAYLsQqq~-p~f~mpV~~YL~L~qP--------~~~~a~~i~~i~~~L~l~DK-L~Rs~~qLSGGEWQRVRLAav~ 140 (248)
T COG4138 71 ARHRAYLSQQQT-PPFAMPVWHYLTLHQP--------DKTRTELLNDVAGALALDDK-LGRSTNQLSGGEWQRVRLAAVV 140 (248)
T ss_pred HHHHHHHhhccC-CcchhhhhhhhhhcCc--------hHHHHHHHHHHHhhhcccch-hhhhhhhcCcccceeeEEeEEE
Confidence 456689988864 3456788888877522 23344567788888999986 7999999999999999999887
Q ss_pred hh-----CC--CEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 176 VQ-----VP--DLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 176 ~~-----~p--~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
+. || ++||+|||.++||...+-.+..+|.+++. +.+|||++||++...+.+|++|.++.|++++.+.
T Consensus 141 LQv~Pd~NP~~~LLllDEP~~~LDvAQ~~aLdrll~~~c~~G~~vims~HDLNhTLrhA~~~wLL~rG~l~~~G~ 215 (248)
T COG4138 141 LQITPDANPAGQLLLLDEPMNSLDVAQQSALDRLLSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKRGKLLASGR 215 (248)
T ss_pred EEecCCCCccceeEEecCCCcchhHHHHHHHHHHHHHHHhCCcEEEEeccchhhHHHHHHHHHHHhcCeEEeecc
Confidence 53 44 79999999999999999999999999875 6999999999999999999999999999988653
|
|
| >cd03272 ABC_SMC3_euk Eukaryotic SMC3 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.8e-35 Score=248.09 Aligned_cols=201 Identities=17% Similarity=0.179 Sum_probs=131.3
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHh----------------CCCCCCcc-------
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLA----------------GLSKPTSG------- 74 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~----------------Gl~~p~~G------- 74 (245)
|+++|. ++|++ ..++.+++ |++++|+||||||||||+++|+ +++.+.+|
T Consensus 4 i~~~nf-ksy~~--~~~~~~~~-----~~~~~i~GpNGsGKStll~ai~~~l~~~~~~~~~~~~~~li~~~~~~~~~~~~ 75 (243)
T cd03272 4 VIIQGF-KSYKD--QTVIEPFS-----PKHNVVVGRNGSGKSNFFAAIRFVLSDEYTHLREEQRQALLHEGSGPSVMSAY 75 (243)
T ss_pred EEEeCc-cCccc--CcccccCC-----CCcEEEECCCCCCHHHHHHHHHHHHcCchhhhhhhhHHHhEeCCCCCCCceEE
Confidence 556665 35653 35778876 8899999999999999999998 44555555
Q ss_pred -eEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCC-cccHHHHHHhcCCCCCCchhHHH-HHHHHHHHHHHHcCCCC
Q 035832 75 -SINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFV-ADNVLDEVIFGWPRQSGSIQLKE-YLALNLQRAINWVGLDG 151 (245)
Q Consensus 75 -~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~~~l~~ 151 (245)
+|.+++.+-.. +........++.+++++|++. ++. ..|..+...+............. ... .+..+.+++..
T Consensus 76 v~i~~~~~~~~~-~~~~~~~~i~r~ig~~~~~~~-l~~~~~t~~ei~~~l~~~gl~~~~~~~~~~q---g~i~~l~~l~~ 150 (243)
T cd03272 76 VEIIFDNSDNRF-PIDKEEVRLRRTIGLKKDEYF-LDKKNVTKNDVMNLLESAGFSRSNPYYIVPQ---GKINSLTNMKQ 150 (243)
T ss_pred EEEEEEcCCCcc-CCCCCEEEEEEEEECCCCEEE-ECCeEcCHHHHHHHHHHcCCCCCCCcEEEEc---CchHHhhhccc
Confidence 55554422100 000001112355788877653 222 23444433221000000000000 000 11223344544
Q ss_pred ccCCCCCCCCChHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhcc
Q 035832 152 TSLDKDPHSLSGGYKRRLALAIQLVQ----VPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVD 227 (245)
Q Consensus 152 ~~~~~~~~~LSgGqkqrv~iAral~~----~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d 227 (245)
. .++++.+||||||||++|||||+. +|+++|+||||++||+.+++.+++.|+++.++.+||++||+.+ +..+||
T Consensus 151 ~-~~~~~~~lS~G~~~r~~la~~l~~~~~~~~~illlDEp~~~ld~~~~~~~~~~l~~~~~~~~ii~~~h~~~-~~~~~d 228 (243)
T cd03272 151 D-EQQEMQQLSGGQKSLVALALIFAIQKCDPAPFYLFDEIDAALDAQYRTAVANMIKELSDGAQFITTTFRPE-LLEVAD 228 (243)
T ss_pred c-ccccccccCHHHHHHHHHHHHHHHhccCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEecCHH-HHhhCC
Confidence 3 578899999999999999999974 5899999999999999999999999999876778888888865 678999
Q ss_pred EEEEEe
Q 035832 228 HSWRMD 233 (245)
Q Consensus 228 ~v~~l~ 233 (245)
++++|.
T Consensus 229 ~i~~l~ 234 (243)
T cd03272 229 KFYGVK 234 (243)
T ss_pred EEEEEE
Confidence 999986
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=100.00 E-value=3e-34 Score=260.69 Aligned_cols=202 Identities=24% Similarity=0.344 Sum_probs=166.8
Q ss_pred CCcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCC
Q 035832 13 CDYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPE 92 (245)
Q Consensus 13 ~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 92 (245)
.+.|.+.++|++|.|.++. .++++++|-|+.++.+++|||||||||||||+++|.+.|+.|.|.-.-.
T Consensus 385 ~p~pvi~~~nv~F~y~~~~-~iy~~l~fgid~~srvAlVGPNG~GKsTLlKl~~gdl~p~~G~vs~~~H----------- 452 (614)
T KOG0927|consen 385 IPPPVIMVQNVSFGYSDNP-MIYKKLNFGIDLDSRVALVGPNGAGKSTLLKLITGDLQPTIGMVSRHSH----------- 452 (614)
T ss_pred CCCCeEEEeccccCCCCcc-hhhhhhhcccCcccceeEecCCCCchhhhHHHHhhcccccccccccccc-----------
Confidence 3577899999999997643 6899999999999999999999999999999999999999998864311
Q ss_pred CCCCCcEEEEecCCCCC-CCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHH
Q 035832 93 PLPPEKVGIVFQFPERY-FVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLAL 171 (245)
Q Consensus 93 ~~~~~~i~~v~Q~~~~~-~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~i 171 (245)
.++++.-|+.... ....++.+++.-.++. ....+.+..++.++||.......++.+||+|||.||.+
T Consensus 453 ----~~~~~y~Qh~~e~ldl~~s~le~~~~~~~~--------~~~~e~~r~ilgrfgLtgd~q~~p~~~LS~Gqr~rVlF 520 (614)
T KOG0927|consen 453 ----NKLPRYNQHLAEQLDLDKSSLEFMMPKFPD--------EKELEEMRSILGRFGLTGDAQVVPMSQLSDGQRRRVLF 520 (614)
T ss_pred ----ccchhhhhhhHhhcCcchhHHHHHHHhccc--------cchHHHHHHHHHHhCCCccccccchhhcccccchhHHH
Confidence 2344555543222 2245777777644321 11234577889999999655688999999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEe
Q 035832 172 AIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240 (245)
Q Consensus 172 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~ 240 (245)
|+.++..|.+|||||||++||.++...+.+.|.++. .+||++|||...+..+++++++.++|.+...
T Consensus 521 a~l~~kqP~lLlLDEPtnhLDi~tid~laeaiNe~~--Ggvv~vSHDfrlI~qVaeEi~~c~~~~~~~~ 587 (614)
T KOG0927|consen 521 ARLAVKQPHLLLLDEPTNHLDIETIDALAEAINEFP--GGVVLVSHDFRLISQVAEEIWVCENGTVTKW 587 (614)
T ss_pred HHHHhcCCcEEEecCCCcCCCchhHHHHHHHHhccC--CceeeeechhhHHHHHHHHhHhhccCceeec
Confidence 999999999999999999999999999999887764 5799999999999999999999999988754
|
|
| >cd03274 ABC_SMC4_euk Eukaryotic SMC4 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=100.00 E-value=4.9e-35 Score=245.66 Aligned_cols=188 Identities=19% Similarity=0.183 Sum_probs=136.6
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.|+++|.. .|++ ..++++++| ++++|+||||||||||+++|. +++|.+... .+.
T Consensus 5 ~l~l~nfk-~~~~--~~~l~~~~~-----~i~~ivGpNGaGKSTll~~i~----------~~~G~~~~~--------~~~ 58 (212)
T cd03274 5 KLVLENFK-SYAG--EQVIGPFHK-----SFSAIVGPNGSGKSNVIDSML----------FVFGFRASK--------MRQ 58 (212)
T ss_pred EEEEECcc-cCCC--CeeeccCCC-----CeEEEECCCCCCHHHHHHHHH----------HHhccCHHH--------hhh
Confidence 37788876 7754 468999988 899999999999999999997 233433211 112
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCC------CchhHHHHHHH--HHHHHHHHcCCCCccCCCCCCCCChHHHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQS------GSIQLKEYLAL--NLQRAINWVGLDGTSLDKDPHSLSGGYKRR 168 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~------~~~~~~~~~~~--~~~~~l~~~~l~~~~~~~~~~~LSgGqkqr 168 (245)
+++++++|+.. .++.+++.+...+...... .... ...... ...++++.+++.+. .++++..||+|||||
T Consensus 59 ~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~g~~-~~~~~~~v~~~~~~~~~~L~~~-~~~~~~~lS~G~~~r 135 (212)
T cd03274 59 KKLSDLIHNSA-GHPNLDSCSVEVHFQEIIDKPLLKSKGID-LDHNRFLILQGEVEQIAQMPKK-SWKNISNLSGGEKTL 135 (212)
T ss_pred hhHHHHhcCCC-CCCCCceEEEEEEEEeCCCHHHHHHCCcC-CCCCceEEcCCcEEEeeccccc-cccchhhcCHHHHHH
Confidence 46888888763 4555666665544211000 0000 000000 01345566788764 688899999999999
Q ss_pred HHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeC
Q 035832 169 LALAIQLVQ----VPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDM 234 (245)
Q Consensus 169 v~iAral~~----~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~ 234 (245)
++||||++. +|++++|||||+|||+.++..+++.|++++++.|+|++||+. ++.++||++++|..
T Consensus 136 ~~la~al~~~~~~~p~ililDEPt~gLD~~~~~~l~~~l~~~~~~~~~iivs~~~-~~~~~~d~v~~~~~ 204 (212)
T cd03274 136 SSLALVFALHHYKPTPLYVMDEIDAALDFRNVSIVANYIKERTKNAQFIVISLRN-NMFELADRLVGIYK 204 (212)
T ss_pred HHHHHHHHhcccCCCCEEEEcCCCcCCCHHHHHHHHHHHHHHcCCCEEEEEECcH-HHHHhCCEEEEEEe
Confidence 999999974 479999999999999999999999999997778999999995 56789999999963
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (fo |
| >cd03240 ABC_Rad50 The catalytic domains of Rad50 are similar to the ATP-binding cassette of ABC transporters, but are not associated with membrane-spanning domains | Back alignment and domain information |
|---|
Probab=100.00 E-value=6.6e-33 Score=231.49 Aligned_cols=166 Identities=25% Similarity=0.310 Sum_probs=128.1
Q ss_pred eeEEEcCCCEEEEECCCCCcHHHHHHHHh----CCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCC-CCC---
Q 035832 38 VSFSLPEKSFGLIFGRSGSGKTTLLQLLA----GLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFP-ERY--- 109 (245)
Q Consensus 38 vsl~i~~Ge~~~liG~nGsGKSTLl~~l~----Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~-~~~--- 109 (245)
.++++.+| +++|+||||||||||+++|. |..+|.+|.+..+...+.. ...+..|+++||++ ...
T Consensus 16 ~~l~~~~g-~~~i~G~NGsGKTTLl~ai~~~l~G~~~~~~~~~~~~~~~i~~-------~~~~~~v~~~f~~~~~~~~~v 87 (204)
T cd03240 16 SEIEFFSP-LTLIVGQNGAGKTTIIEALKYALTGELPPNSKGGAHDPKLIRE-------GEVRAQVKLAFENANGKKYTI 87 (204)
T ss_pred eEEecCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCcccccccchHHHHhC-------CCCcEEEEEEEEeCCCCEEEE
Confidence 34566677 99999999999999999994 9999988877622222211 11246799999997 221
Q ss_pred CCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHH------HHHHHHHhhCCCEEE
Q 035832 110 FVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRR------LALAIQLVQVPDLLI 183 (245)
Q Consensus 110 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqr------v~iAral~~~p~lll 183 (245)
...+++++|+.+.. .. .+.+. +++++.+||+||+|| ++||||++.+|+++|
T Consensus 88 ~r~~~~~~~~~~~~---------~~----~~~~~----------~~~~~~~LS~G~~~~~~la~rlala~al~~~p~ill 144 (204)
T cd03240 88 TRSLAILENVIFCH---------QG----ESNWP----------LLDMRGRCSGGEKVLASLIIRLALAETFGSNCGILA 144 (204)
T ss_pred EEEhhHhhceeeec---------hH----HHHHH----------HhcCccccCccHHHHHHHHHHHHHHHHhccCCCEEE
Confidence 22348888886531 01 11111 266789999999996 789999999999999
Q ss_pred EeCCCCCCCHHHHH-HHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCC
Q 035832 184 LDEPLAGLDWKARA-DVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMG 235 (245)
Q Consensus 184 lDEPts~LD~~~~~-~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G 235 (245)
+||||++||+..++ .+.++|.++++ +.|||++||+++.+ ..||+++.|++.
T Consensus 145 lDEP~~~LD~~~~~~~l~~~l~~~~~~~~~~iiiitH~~~~~-~~~d~i~~l~~~ 198 (204)
T cd03240 145 LDEPTTNLDEENIEESLAEIIEERKSQKNFQLIVITHDEELV-DAADHIYRVEKD 198 (204)
T ss_pred EcCCccccCHHHHHHHHHHHHHHHHhccCCEEEEEEecHHHH-hhCCEEEEEeeC
Confidence 99999999999999 99999999865 57999999999876 579999999753
|
The conserved ATP-binding motifs common to Rad50 and the ABC transporter family include the Walker A and Walker B motifs, the Q loop, a histidine residue in the switch region, a D-loop, and a conserved LSGG sequence. This conserved sequence, LSGG, is the most specific and characteristic motif of this family and is thus known as the ABC signature sequence. |
| >COG4170 SapD ABC-type antimicrobial peptide transport system, ATPase component [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.6e-33 Score=229.27 Aligned_cols=225 Identities=24% Similarity=0.346 Sum_probs=176.9
Q ss_pred ceEEEEeEEEECC--CCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC----CcceEEEcCccCCCCCCC
Q 035832 16 SCLEVRDVSYRPP--GTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP----TSGSINIRGYNNDGEPNN 89 (245)
Q Consensus 16 ~~l~~~~l~~~y~--~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p----~~G~i~~~g~~~~~~~~~ 89 (245)
+.+.+.|++..+. .+...+++++|+++++||+-+|+|+||||||-..++|+|..+- +.-..+|++.++...+..
T Consensus 2 ~LLDIrnL~IE~~TsqG~vK~VD~v~ltlnEGEi~GLVGESGSGKSLiAK~Ic~v~kdnW~vTADR~Rf~~idLL~L~Pr 81 (330)
T COG4170 2 PLLDIRNLTIEFKTSQGWVKAVDRVSMTLNEGEIRGLVGESGSGKSLIAKAICGVNKDNWRVTADRMRFDDIDLLRLSPR 81 (330)
T ss_pred CcccccceEEEEecCCCceEeeeeeeeeeccceeeeeeccCCCchhHHHHHHhcccccceEEEhhhcccccchhhcCChH
Confidence 5688999998763 3346799999999999999999999999999999999999864 356677888777655444
Q ss_pred CCCCCCCCcEEEEecCCCCCC-CcccHHHHHHhcCC---CCCCchhHHHHHHHHHHHHHHHcCCCCc--cCCCCCCCCCh
Q 035832 90 SPEPLPPEKVGIVFQFPERYF-VADNVLDEVIFGWP---RQSGSIQLKEYLALNLQRAINWVGLDGT--SLDKDPHSLSG 163 (245)
Q Consensus 90 ~~~~~~~~~i~~v~Q~~~~~~-~~~tv~e~l~~~~~---~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~~~~~LSg 163 (245)
..++...+.|+++||+|...+ +..++...+.-..+ .....+..-.+...++-++|..+|+.+. .+..+|++|--
T Consensus 82 ~RRk~ig~~isMIFQeP~sCLDPS~~iG~QlIq~IP~wTfkgrWWq~F~WrKrrAIeLLHrVGIKdHkDIM~SYP~ElTe 161 (330)
T COG4170 82 ERRKLVGHNVSMIFQEPQSCLDPSERVGRQLIQNIPAWTYKGRWWQRFGWRKRRAIELLHRVGIKDHKDIMRSYPYELTE 161 (330)
T ss_pred HhhhhhccchhhhhcCchhhcChHHHHHHHHHhhCccccccchHhhhhchhHHHHHHHHHHhccccHHHHHHhCcchhcc
Confidence 334444567999999996544 33455443332211 1111222223445577889999999753 24579999999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEe
Q 035832 164 GYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240 (245)
Q Consensus 164 Gqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~ 240 (245)
||-|+|+||.|++.+|++||+||||+++|+.++.+++.+|.++++ +.||++++||+..+...||++-+|.=|+-+..
T Consensus 162 GE~QKVMIA~A~AnqPrLLIADEPTN~~e~~Tq~QifRLLs~mNQn~~TtILL~s~Dl~~is~W~d~i~VlYCGQ~~ES 240 (330)
T COG4170 162 GECQKVMIAIALANQPRLLIADEPTNSMEPTTQAQIFRLLSRLNQNSNTTILLISHDLQMISQWADKINVLYCGQTVES 240 (330)
T ss_pred CcceeeeeehhhccCCceEeccCCCcccCccHHHHHHHHHHHhhccCCceEEEEcccHHHHHHHhhheEEEEecccccc
Confidence 999999999999999999999999999999999999999999975 48999999999999999999999988876543
|
|
| >COG3845 ABC-type uncharacterized transport systems, ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.98 E-value=2.2e-31 Score=240.43 Aligned_cols=225 Identities=26% Similarity=0.331 Sum_probs=187.6
Q ss_pred CCcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccC-CCCCCCCC
Q 035832 13 CDYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNN-DGEPNNSP 91 (245)
Q Consensus 13 ~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~-~~~~~~~~ 91 (245)
.+.+.|+++||+..-.. ..+.+++|||++.+|||+||.|-.|-|-+.|+.+|+|+.+|.+|+|.++|+++ ...+ .
T Consensus 253 pg~~vL~V~~L~v~~~~-~~~~v~~vs~~Vr~GEIvGIAGV~GNGQ~eL~eaisGlr~~~~G~I~l~G~~v~~~~~---~ 328 (501)
T COG3845 253 PGEVVLEVEDLSVKDRR-GVTAVKDVSFEVRAGEIVGIAGVAGNGQSELVEAISGLRKPASGRILLNGKDVLGRLS---P 328 (501)
T ss_pred CCCeEEEEeeeEeecCC-CCceeeeeeeEEecCcEEEEEecCCCCHHHHHHHHhCCCccCCceEEECCEeccccCC---H
Confidence 35778999999987643 24689999999999999999999999999999999999999999999999997 2222 2
Q ss_pred CCCCCCcEEEEecCCC--CCCCcccHHHHHHhcCCCC----CCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHH
Q 035832 92 EPLPPEKVGIVFQFPE--RYFVADNVLDEVIFGWPRQ----SGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGY 165 (245)
Q Consensus 92 ~~~~~~~i~~v~Q~~~--~~~~~~tv~e~l~~~~~~~----~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq 165 (245)
...++..+||||.+.. -+...+|+.||+.+..... ...............++++.+++.......++.+||||.
T Consensus 329 ~~~r~~G~~~VPedR~~~Glv~~~sl~eN~vL~~~~~~~~~~~g~l~~~~i~~~a~~li~~fdVr~~~~~~~a~~LSGGN 408 (501)
T COG3845 329 RERRRLGLAYVPEDRHGHGLVLDLSLAENLVLGRHDKKPFSRGGFLDRRAIRKFARELIEEFDVRAPSPDAPARSLSGGN 408 (501)
T ss_pred HHHHhcCCccCChhhccCccccCccHHHHhhhhhccccccccccccCHHHHHHHHHHHHHHcCccCCCCCcchhhcCCcc
Confidence 2234567999999862 2456789999998863321 111112344566788899999986444577899999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 166 KRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 166 kqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+||+-+||=|..+|++||+.+||.|||..+.+.+.+.|.+.++ +++|+++|-|++++..+|||+.+|.+|+++...
T Consensus 409 qQK~IlaREl~~~p~lLI~~qPTrGLDvgA~~~I~~~l~e~r~~G~AVLLiS~dLDEil~lsDrIaVi~~Gri~~~~ 485 (501)
T COG3845 409 QQKLILARELARRPDLLIAAQPTRGLDVGAIEFIHERLLELRDAGKAVLLISEDLDEILELSDRIAVIYEGRIVGIV 485 (501)
T ss_pred eehhhhhhhhccCCCEEEEcCCCccccHHHHHHHHHHHHHHHhcCCEEEEEehhHHHHHHhhheeeeeeCCceeccc
Confidence 9999999999999999999999999999999999999999875 699999999999999999999999999997643
|
|
| >COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.9e-31 Score=246.11 Aligned_cols=194 Identities=26% Similarity=0.349 Sum_probs=159.0
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
...|+++|++..-+++ ...+++.||++++||.+.|.||||||||||+|+|+|+.|.-+|+|.+- .
T Consensus 390 ~~~i~~~nl~l~~p~~-~~ll~~l~~~v~~G~~llI~G~SG~GKTsLlRaiaGLWP~g~G~I~~P--------~------ 454 (604)
T COG4178 390 DHGITLENLSLRTPDG-QTLLSELNFEVRPGERLLITGESGAGKTSLLRALAGLWPWGSGRISMP--------A------ 454 (604)
T ss_pred cceeEEeeeeEECCCC-CeeeccceeeeCCCCEEEEECCCCCCHHHHHHHHhccCccCCCceecC--------C------
Confidence 4689999999998875 478999999999999999999999999999999999999999988652 0
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCcc-----CCCCCCCCChHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTS-----LDKDPHSLSGGYKRRL 169 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~~~~~~LSgGqkqrv 169 (245)
...+-|+||.| +++..|.+|-+.++.... . ...+.+.++|..+||.+.. .++=-..||+|||||+
T Consensus 455 -~~~~lflpQ~P--Y~p~GtLre~l~YP~~~~--~-----~~d~~l~~vL~~vgL~~L~~rl~~~~~W~~vLS~GEqQRl 524 (604)
T COG4178 455 -DSALLFLPQRP--YLPQGTLREALCYPNAAP--D-----FSDAELVAVLHKVGLGDLAERLDEEDRWDRVLSGGEQQRL 524 (604)
T ss_pred -CCceEEecCCC--CCCCccHHHHHhCCCCCC--C-----CChHHHHHHHHHcCcHHHHHHHhccCcHhhhcChhHHHHH
Confidence 24588999998 678889999999863221 1 1123466777888876420 0111246999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeC
Q 035832 170 ALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDM 234 (245)
Q Consensus 170 ~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~ 234 (245)
++||.|+++|++++|||.|++||+.+...+++++++-..+.|||-|+|.... ..+.++.+.+.+
T Consensus 525 afARilL~kP~~v~LDEATsALDe~~e~~l~q~l~~~lp~~tvISV~Hr~tl-~~~h~~~l~l~~ 588 (604)
T COG4178 525 AFARLLLHKPKWVFLDEATSALDEETEDRLYQLLKEELPDATVISVGHRPTL-WNFHSRQLELLD 588 (604)
T ss_pred HHHHHHHcCCCEEEEecchhccChHHHHHHHHHHHhhCCCCEEEEeccchhh-HHHHhhheeecc
Confidence 9999999999999999999999999999999999987778999999999765 566677666653
|
|
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.97 E-value=4.2e-31 Score=270.22 Aligned_cols=217 Identities=22% Similarity=0.296 Sum_probs=151.7
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHH---------HHhCCCCCCcc----e----EEE
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQ---------LLAGLSKPTSG----S----INI 78 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~---------~l~Gl~~p~~G----~----i~~ 78 (245)
..|++++++. ..|+++||+|++||+++|+|+||||||||++ .|.|...+..+ . |.+
T Consensus 599 ~~L~l~~~~~-------~~Lk~isl~Ip~Geiv~VtG~nGSGKSTLl~~~L~~~l~~~l~~~~~~~~~i~g~~i~~vi~i 671 (1809)
T PRK00635 599 GTLTLSKATK-------HNLKDLTISLPLGRLTVVTGVSGSGKSSLINDTLVPAVEEFIEQGFCSNLSIQWGAISRLVHI 671 (1809)
T ss_pred CeEEEecccc-------CCccceEEEEcCCcEEEEEcCCCCCHHHHHHHHHHHHHHHHhcCCCcccccccccccceeEEe
Confidence 3688888752 2599999999999999999999999999999 66775433111 1 233
Q ss_pred cCccCCCCCCCCCCC------CC--------------CCcEEEEecC------------------CC-------------
Q 035832 79 RGYNNDGEPNNSPEP------LP--------------PEKVGIVFQF------------------PE------------- 107 (245)
Q Consensus 79 ~g~~~~~~~~~~~~~------~~--------------~~~i~~v~Q~------------------~~------------- 107 (245)
+-..+...+...... .. .....|.|+. +.
T Consensus 672 dQspigr~~rS~~atY~g~fd~IR~lFA~~~~ak~~g~~~~~fsfn~~gG~C~~c~g~g~i~v~m~~~~v~c~~C~GkRy 751 (1809)
T PRK00635 672 TRDLPGRSQRSIPLTYIKAFDDLRELFAEQPRSKRLGLTKSHFSFNTPLGACAECQGLGSITTTDNRTSIPCPSCLGKRF 751 (1809)
T ss_pred cCCCCCCCCCCCceeehhhhHHHHHHHhhChHHHHcCCCcceeeecCCCCCCCcceeeEEEEEecCCceEECCccCCccc
Confidence 333332211100000 00 0112233332 00
Q ss_pred ------CCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh---hC
Q 035832 108 ------RYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV---QV 178 (245)
Q Consensus 108 ------~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~---~~ 178 (245)
..+...||.|++.++................++ ++++.+|+.+..+++++.+|||||+||++|||||+ .+
T Consensus 752 ~~e~L~~~~~~~tI~evL~mtv~ea~~~f~~~~~i~~~l-~~L~~vGL~~l~l~q~~~tLSGGE~QRV~LAraL~~~~~~ 830 (1809)
T PRK00635 752 LPQVLEVRYKGKNIADILEMTAYEAEKFFLDEPSIHEKI-HALCSLGLDYLPLGRPLSSLSGGEIQRLKLAYELLAPSKK 830 (1809)
T ss_pred CHHHHhhccCCCCHHHHHHcCHHHHHHcccChHHHHHHH-HHHHHcCCcchhhcCccccCCHHHHHHHHHHHHHhhcCCC
Confidence 123356888888775321100000112334445 57899999863258999999999999999999998 69
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEe------CCeEEEec
Q 035832 179 PDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMD------MGGFLVEQ 241 (245)
Q Consensus 179 p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~------~G~i~~~~ 241 (245)
|+++||||||+|||+..++.++++|.++.+ +.|||++||+++.+ .+||++++|. +|++++++
T Consensus 831 P~LLILDEPTsGLD~~~~~~Ll~lL~~L~~~G~TVIiIsHdl~~i-~~aDrVi~L~p~gg~~~G~iv~~G 899 (1809)
T PRK00635 831 PTLYVLDEPTTGLHTHDIKALIYVLQSLTHQGHTVVIIEHNMHVV-KVADYVLELGPEGGNLGGYLLASC 899 (1809)
T ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-HhCCEEEEEccCCCCCCCEEEEeC
Confidence 999999999999999999999999999864 68999999999998 7999999996 67887764
|
|
| >COG4615 PvdE ABC-type siderophore export system, fused ATPase and permease components [Secondary metabolites biosynthesis, transport, and catabolism / Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3e-32 Score=240.07 Aligned_cols=203 Identities=28% Similarity=0.330 Sum_probs=157.4
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.|+++|+.|.|.... .-+..||++|++||++.|+|.||||||||+++++|+++|++|+|++||+++..... ...|
T Consensus 322 ~lelrnvrfay~~~~-FhvgPiNl~ikrGelvFliG~NGsGKST~~~LLtGL~~PqsG~I~ldg~pV~~e~l----edYR 396 (546)
T COG4615 322 TLELRNVRFAYQDNA-FHVGPINLTIKRGELVFLIGGNGSGKSTLAMLLTGLYQPQSGEILLDGKPVSAEQL----EDYR 396 (546)
T ss_pred ceeeeeeeeccCccc-ceecceeeEEecCcEEEEECCCCCcHHHHHHHHhcccCCCCCceeECCccCCCCCH----HHHH
Confidence 599999999997643 35789999999999999999999999999999999999999999999998865432 1235
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCc--cCCC--CCCCCChHHHHHHHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGT--SLDK--DPHSLSGGYKRRLALA 172 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--~~~~--~~~~LSgGqkqrv~iA 172 (245)
+-++-||.|.. +|+. + ++ +... ...+.++.+++++.+.+. ..+. .+-.||.|||+|+++.
T Consensus 397 ~LfSavFsDyh-LF~~-l------l~-~e~~-------as~q~i~~~LqrLel~~ktsl~d~~fs~~kLStGQkKRlAll 460 (546)
T COG4615 397 KLFSAVFSDYH-LFDQ-L------LG-PEGK-------ASPQLIEKWLQRLELAHKTSLNDGRFSNLKLSTGQKKRLALL 460 (546)
T ss_pred HHHHHHhhhHh-hhHh-h------hC-CccC-------CChHHHHHHHHHHHHhhhhcccCCcccccccccchHHHHHHH
Confidence 55777777752 3321 1 11 1110 112234555665555321 1122 3557999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH-hhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 173 IQLVQVPDLLILDEPLAGLDWKARADVVKLLKH-LKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 173 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~-l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
-|++-+.+++++||=-+.-||.-++.+++.+-- +++ ++||+.||||-. ....+||.+.+++|++++..
T Consensus 461 ~AllEeR~Ilv~DEWAADQDPaFRR~FY~~lLp~LK~qGKTI~aIsHDd~-YF~~ADrll~~~~G~~~e~t 530 (546)
T COG4615 461 LALLEERDILVLDEWAADQDPAFRREFYQVLLPLLKEQGKTIFAISHDDH-YFIHADRLLEMRNGQLSELT 530 (546)
T ss_pred HHHHhhCCeEEeehhhccCChHHHHHHHHHHhHHHHHhCCeEEEEecCch-hhhhHHHHHHHhcCceeecc
Confidence 999999999999999999999999999988765 454 699999999965 45689999999999998754
|
|
| >KOG0927 consensus Predicted transporter (ABC superfamily) [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.4e-30 Score=236.82 Aligned_cols=216 Identities=22% Similarity=0.298 Sum_probs=148.9
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
-++++|+++.|.+ +.+++|++|++++|+.+||+|||||||||+|++|+|-..|..-++-+.-.+- .... +. .
T Consensus 75 dvk~~sls~s~~g--~~l~kd~~~El~~g~rygLiG~nG~Gkst~L~~i~~~e~P~p~~~d~y~ls~-e~~p---s~--~ 146 (614)
T KOG0927|consen 75 DVKIESLSLSFHG--VELIKDVTLELNRGRRYGLIGPNGSGKSTFLRAIAGREVPIPEHIDFYLLSR-EIEP---SE--K 146 (614)
T ss_pred cceeeeeeeccCC--ceeeeeeeEEecCCceEEEEcCCCCcHhHHHHHHhcCCCCCCcccchhhhcc-cCCC---ch--H
Confidence 4899999999975 5789999999999999999999999999999999999998655553321100 0000 00 0
Q ss_pred CcEEEEecCCCCC-CCcccHHHHHHhcCCCCCCc-----h-----hHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHH
Q 035832 97 EKVGIVFQFPERY-FVADNVLDEVIFGWPRQSGS-----I-----QLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGY 165 (245)
Q Consensus 97 ~~i~~v~Q~~~~~-~~~~tv~e~l~~~~~~~~~~-----~-----~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq 165 (245)
+-+-++++..... ..-.--.|.+.-........ . ......+.++.+++.-+|......++....||||+
T Consensus 147 ~av~~v~~~~~~e~~rle~~~E~l~~~~d~~~~~~l~~~~~r~~~~d~~~~~~k~~~il~glgf~~~m~~k~~~~~SgGw 226 (614)
T KOG0927|consen 147 QAVQAVVMETDHERKRLEYLAEDLAQACDDKEKDELDELYERLDEMDNDTFEAKAAKILHGLGFLSEMQDKKVKDLSGGW 226 (614)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHHHHhhccchhhhHHHHHHHHHHhhCchhHHHHHHHHHHhcCCCHhHHHHHhhccCchH
Confidence 1111222110000 00000011111110000000 0 00012233455666666665545688999999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 166 KRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 166 kqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|.|++|||||..+|++|||||||++||+++...+-+.|.+.... ++++++|+-+++-.+|..|+.+++++.+.-+
T Consensus 227 rmR~aLAr~Lf~kP~LLLLDEPtnhLDleA~~wLee~L~k~d~~-~lVi~sh~QDfln~vCT~Ii~l~~kkl~~y~ 301 (614)
T KOG0927|consen 227 RMRAALARALFQKPDLLLLDEPTNHLDLEAIVWLEEYLAKYDRI-ILVIVSHSQDFLNGVCTNIIHLDNKKLIYYE 301 (614)
T ss_pred HHHHHHHHHHhcCCCEEEecCCccCCCHHHHHHHHHHHHhccCc-eEEEEecchhhhhhHhhhhheecccceeeec
Confidence 99999999999999999999999999999999999999887543 8999999999999999999999999865543
|
|
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.97 E-value=6.4e-30 Score=251.75 Aligned_cols=102 Identities=27% Similarity=0.414 Sum_probs=91.9
Q ss_pred HHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEE
Q 035832 140 LQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVP---DLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVV 215 (245)
Q Consensus 140 ~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p---~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~ 215 (245)
..+.++.+||....+++++.+|||||+||+.||++|+.+| +++||||||+|||+..+..++++|+++.+ +.|||++
T Consensus 810 ~l~~L~~vgL~~l~l~~~~~tLSgGEkQRl~LAraL~~~p~~~~llILDEPtsGLD~~~~~~L~~~L~~l~~~G~TVIii 889 (943)
T PRK00349 810 KLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFEDIRKLLEVLHRLVDKGNTVVVI 889 (943)
T ss_pred HHHHHHHCCCCcccccCCcccCCHHHHHHHHHHHHHhcCCCCCeEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 4567889999864468999999999999999999999999 99999999999999999999999999864 6899999
Q ss_pred ecChhHHHhhccEEEEE------eCCeEEEecc
Q 035832 216 SHDLKEMAALVDHSWRM------DMGGFLVEQR 242 (245)
Q Consensus 216 tHd~~~~~~~~d~v~~l------~~G~i~~~~~ 242 (245)
||+++.+. .||+++.| ++|+++..+.
T Consensus 890 tH~~~~i~-~aD~ii~Lgp~~G~~~G~Iv~~Gt 921 (943)
T PRK00349 890 EHNLDVIK-TADWIIDLGPEGGDGGGEIVATGT 921 (943)
T ss_pred ecCHHHHH-hCCEEEEecCCcCCCCCEEEEeCC
Confidence 99999885 79999999 6899987653
|
|
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.2e-31 Score=263.89 Aligned_cols=214 Identities=28% Similarity=0.323 Sum_probs=169.7
Q ss_pred EEEEeEEEEC--CCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--CCcceEEEcCccCCCCCCCCCCC
Q 035832 18 LEVRDVSYRP--PGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK--PTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 18 l~~~~l~~~y--~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
....|+.+.. .++.+.+|+||+=-++||-.+||+|+|||||||||++|+|-.. ..+|+|.++|.+... .
T Consensus 788 ~~w~dl~~~~~~qG~~~qLL~~V~G~~kPG~LTALMG~SGAGKTTLLdvLA~R~t~G~I~Gdi~i~G~p~~q-------~ 860 (1391)
T KOG0065|consen 788 FYWVDLPYEMPIQGGTRQLLNNVSGAFKPGVLTALMGESGAGKTTLLDVLAGRKTGGYIEGDILISGFPKDQ-------E 860 (1391)
T ss_pred EEEEeCCccccccccceEhhhcCceEecCCceeehhcCCCCchHHHHHHHhcCcccceEEeEEEECCeeCch-------h
Confidence 3344444432 3445789999999999999999999999999999999999753 247999999987532 1
Q ss_pred CCCCcEEEEecCCCCCCCcccHHHHHHhcCC-CCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCC----CChHHHHH
Q 035832 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWP-RQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHS----LSGGYKRR 168 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~-~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~----LSgGqkqr 168 (245)
-.++.+|||-|+.. ..+..||+|-+.|... +..... ...+..+.++++++.++|++. .+.-++. ||..||+|
T Consensus 861 tF~R~~GYvqQ~Di-H~~~~TVrESL~fSA~LRlp~~v-~~~ek~~yVe~Vi~lleL~~~-~daiVG~~G~GLs~eQRKr 937 (1391)
T KOG0065|consen 861 TFARVSGYVEQQDI-HSPELTVRESLRFSAALRLPKEV-SDEEKYEYVEEVIELLELKEY-ADALVGLPGSGLSTEQRKR 937 (1391)
T ss_pred hhccccceeecccc-cCcccchHHHHHHHHHHcCCCcC-CHHHHHHHHHHHHHHhCchhh-hhhhccCCCCCCCHHHhce
Confidence 24678999999974 5688999999998632 211111 123334568899999999875 4665555 99999999
Q ss_pred HHHHHHHhhCC-CEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhH-HHhhccEEEEEeCC-eEEEec
Q 035832 169 LALAIQLVQVP-DLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKE-MAALVDHSWRMDMG-GFLVEQ 241 (245)
Q Consensus 169 v~iAral~~~p-~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~-~~~~~d~v~~l~~G-~i~~~~ 241 (245)
+.||--|+.+| .||+|||||||||..+...+++.++++.. |.||+++-|.+.. +.+..|++++|+.| +.|.-+
T Consensus 938 LTIgVELvA~P~~ilFLDEPTSGLDsqaA~~i~~~lrkla~tGqtIlCTIHQPS~~ife~FD~LLLLkrGGqtVY~G 1014 (1391)
T KOG0065|consen 938 LTIGVELVANPSSILFLDEPTSGLDSQAAAIVMRFLRKLADTGQTILCTIHQPSIDIFEAFDELLLLKRGGQTVYFG 1014 (1391)
T ss_pred eeEEEEEecCCceeEEecCCCCCccHHHHHHHHHHHHHHHhcCCeEEEEecCCcHHHHHHHhHHHHHhcCCeEEEec
Confidence 99999999999 99999999999999999999999999975 7999999998754 55678999999875 455443
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.97 E-value=3.5e-30 Score=230.42 Aligned_cols=188 Identities=30% Similarity=0.323 Sum_probs=147.0
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
.+++..++++.|++ ..|+==.=+|..||+++++||||-||||+.++|+|.++|++|+ ..
T Consensus 341 ~lv~y~~~~k~~g~---F~L~V~~G~i~~gEvigilGpNgiGKTTFvk~LAG~ikPdeg~----~~-------------- 399 (591)
T COG1245 341 TLVEYPDLKKTYGD---FKLEVEEGEIYDGEVIGILGPNGIGKTTFVKLLAGVIKPDEGS----EE-------------- 399 (591)
T ss_pred eeeecchheeecCc---eEEEecCCeeecceEEEEECCCCcchHHHHHHHhccccCCCCC----Cc--------------
Confidence 34455555555542 1233333345578899999999999999999999999999997 11
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
.-+|+|=||.-.. -...||.+.+.-........ .+ --.++++-++|+.. +++++.+|||||.|||+||.||
T Consensus 400 ~~~vSyKPQyI~~-~~~gtV~~~l~~~~~~~~~~----s~---~~~ei~~pl~l~~i-~e~~v~~LSGGELQRvaIaa~L 470 (591)
T COG1245 400 DLKVSYKPQYISP-DYDGTVEDLLRSAIRSAFGS----SY---FKTEIVKPLNLEDL-LERPVDELSGGELQRVAIAAAL 470 (591)
T ss_pred cceEeecceeecC-CCCCcHHHHHHHhhhhhccc----ch---hHHhhcCccchHHH-HhcccccCCchhHHHHHHHHHh
Confidence 1358899997643 24679988876542211111 11 12456777899876 7999999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEe
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMD 233 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~ 233 (245)
..+++++|||||++.||.+.+..+-+.|++..+ ++|.++|.||+-.+.-++||+++.+
T Consensus 471 ~reADlYllDEPSA~LDvEqR~~vakvIRR~~e~~~kta~vVdHDi~~~dyvsDr~ivF~ 530 (591)
T COG1245 471 SREADLYLLDEPSAYLDVEQRIIVAKVIRRFIENNEKTALVVDHDIYMIDYVSDRLIVFE 530 (591)
T ss_pred ccccCEEEecCchhhccHHHHHHHHHHHHHHHhhcCceEEEEecceehhhhhhceEEEEe
Confidence 999999999999999999999999999999864 4899999999999999999999987
|
|
| >cd03275 ABC_SMC1_euk Eukaryotic SMC1 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.8e-30 Score=222.71 Aligned_cols=200 Identities=18% Similarity=0.163 Sum_probs=130.3
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCcc-CCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYN-NDGEPNNSPEPLPP 96 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~-~~~~~~~~~~~~~~ 96 (245)
|+++|. +.|.+ . .+|.+.++ +++|+||||||||||+.+|++++.+..|+++..+.+ +-............
T Consensus 4 i~l~nf-~~~~~--~-----~~~~~~~~-~~~i~G~NGsGKStll~ai~~~l~~~~~~~r~~~~~~~i~~~~~~~~~~~~ 74 (247)
T cd03275 4 LELENF-KSYKG--R-----HVIGPFDR-FTCIIGPNGSGKSNLMDAISFVLGEKSSHLRSKNLKDLIYRARVGKPDSNS 74 (247)
T ss_pred EEEECc-cccCC--C-----eeecCCCC-eEEEECCCCCCHHHHHHHHHHHhCCCcccccccchhhhcccCccccCCCce
Confidence 667776 45632 1 12333344 999999999999999999999998888888665421 10000000000112
Q ss_pred CcEEEEecC--CCCCCCcccHHHHHH-hcCCCCCCchhHHHHHHHHHHHHHHHcCCCCc---------------------
Q 035832 97 EKVGIVFQF--PERYFVADNVLDEVI-FGWPRQSGSIQLKEYLALNLQRAINWVGLDGT--------------------- 152 (245)
Q Consensus 97 ~~i~~v~Q~--~~~~~~~~tv~e~l~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~--------------------- 152 (245)
..+.+.|+. +...+...++.+... +.. . ... .....+.++++.+|+...
T Consensus 75 ~~v~~~f~~~~~~~~~~~~~~~~~~~~~~i-n--gk~----~s~~~~~~~l~~~gi~~~~~~~~i~Qg~v~~i~~~~p~~ 147 (247)
T cd03275 75 AYVTAVYEDDDGEEKTFRRIITGGSSSYRI-N--GKV----VSLKEYNEELEKINILVKARNFLVFQGDVESIASKNPPG 147 (247)
T ss_pred EEEEEEEEcCCCcEEEEEEEEECCceEEEE-C--CEE----ecHHHHHHHHHHhCCCCCCCeEEEECCchhhhhhccCcc
Confidence 345555543 321222222222111 110 0 111 112234577788888421
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHhhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhcc
Q 035832 153 SLDKDPHSLSGGYKRRLALAIQLVQV----PDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVD 227 (245)
Q Consensus 153 ~~~~~~~~LSgGqkqrv~iAral~~~----p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d 227 (245)
..++++.+||+|||||++||+|++.+ |+++||||||++||+..+..+.+.|.++.+ +.+||+|||+.+. ..+||
T Consensus 148 ~~~~~~~~LS~G~k~rl~la~al~~~~~~~p~~lllDEPt~~LD~~~~~~l~~~i~~~~~~g~~vi~isH~~~~-~~~~d 226 (247)
T cd03275 148 KRFRDMDNLSGGEKTMAALALLFAIHSYQPAPFFVLDEVDAALDNTNVGKVASYIREQAGPNFQFIVISLKEEF-FSKAD 226 (247)
T ss_pred hhhhhHHHcCHHHHHHHHHHHHHHHhccCCCCEEEEecccccCCHHHHHHHHHHHHHhccCCcEEEEEECCHHH-HhhCC
Confidence 01234589999999999999999875 899999999999999999999999999875 6899999999776 47899
Q ss_pred EEEEEeC
Q 035832 228 HSWRMDM 234 (245)
Q Consensus 228 ~v~~l~~ 234 (245)
++++|..
T Consensus 227 ~i~~~~~ 233 (247)
T cd03275 227 ALVGVYR 233 (247)
T ss_pred eEEEEEe
Confidence 9999863
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.97 E-value=7.1e-30 Score=231.11 Aligned_cols=200 Identities=28% Similarity=0.381 Sum_probs=166.6
Q ss_pred CCcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCC
Q 035832 13 CDYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPE 92 (245)
Q Consensus 13 ~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 92 (245)
-..|.|++.+|+|.|..+.-+.+.++++.++.-+.++++|+||+||||+++++.|-..|..|.+.+.
T Consensus 358 ~~~p~l~i~~V~f~y~p~~y~~~~~~~~d~e~~sRi~~vg~ng~gkst~lKi~~~~l~~~rgi~~~~------------- 424 (582)
T KOG0062|consen 358 LSPPNLRISYVAFEYTPSEYQWRKQLGLDRESDSRISRVGENGDGKSTLLKILKGDLTPTRGIVGRH------------- 424 (582)
T ss_pred CCCCeeEEEeeeccCCCcchhhhhccCCccchhhhhheeccCchhHHHHHHHHhccCCcccceeeec-------------
Confidence 3466899999999997643368999999999999999999999999999999999999999988663
Q ss_pred CCCCCcEEEEecCCCCCCCcccH--HHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHH
Q 035832 93 PLPPEKVGIVFQFPERYFVADNV--LDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLA 170 (245)
Q Consensus 93 ~~~~~~i~~v~Q~~~~~~~~~tv--~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ 170 (245)
.|.+|+|-+|.-. -+...+| .+.+.-.++ +. .++.++..+..||++.....+.+..||||||-||+
T Consensus 425 --~r~ri~~f~Qhhv-d~l~~~v~~vd~~~~~~p---G~------~~ee~r~hl~~~Gl~g~la~~si~~LSGGQKsrva 492 (582)
T KOG0062|consen 425 --PRLRIKYFAQHHV-DFLDKNVNAVDFMEKSFP---GK------TEEEIRRHLGSFGLSGELALQSIASLSGGQKSRVA 492 (582)
T ss_pred --ccceecchhHhhh-hHHHHHhHHHHHHHHhCC---CC------CHHHHHHHHHhcCCCchhhhccccccCCcchhHHH
Confidence 2567999999853 2333333 222222111 11 23456778999999876667778999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEE
Q 035832 171 LAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLV 239 (245)
Q Consensus 171 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~ 239 (245)
+|.+...+|-+|+|||||+.||.++...+-+.|+... ..||+||||.+++...|+.+|+.++|++..
T Consensus 493 fA~~~~~~PhlLVLDEPTNhLD~dsl~AL~~Al~~F~--GGVv~VSHd~~fi~~~c~E~Wvve~g~vt~ 559 (582)
T KOG0062|consen 493 FAACTWNNPHLLVLDEPTNHLDRDSLGALAKALKNFN--GGVVLVSHDEEFISSLCKELWVVEDGKVTP 559 (582)
T ss_pred HHHHhcCCCcEEEecCCCccccHHHHHHHHHHHHhcC--CcEEEEECcHHHHhhcCceeEEEcCCcEEe
Confidence 9999999999999999999999999999999888875 469999999999999999999999999864
|
|
| >cd03276 ABC_SMC6_euk Eukaryotic SMC6 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.97 E-value=1.3e-29 Score=210.69 Aligned_cols=173 Identities=18% Similarity=0.147 Sum_probs=123.8
Q ss_pred eeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCccc
Q 035832 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADN 114 (245)
Q Consensus 35 l~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~t 114 (245)
++++++++.+| +.+|+||||||||||+.+|......... ....|..+..... .......|.+.||+.. .+.
T Consensus 12 ~~~~~l~f~~g-l~~i~G~NGsGKStll~ai~~~l~~~~~-~~~r~~~~~~~i~---~~~~~~~i~~~~~~~~-~~~--- 82 (198)
T cd03276 12 HRHLQIEFGPR-VNFIVGNNGSGKSAILTALTIGLGGKAS-DTNRGSSLKDLIK---DGESSAKITVTLKNQG-LDA--- 82 (198)
T ss_pred eeeeEEecCCC-eEEEECCCCCcHHHHHHHHHHHhcCCcc-cccccccHHHHhh---CCCCeEEEEEEEEcCC-ccC---
Confidence 57788888887 8899999999999999999854332211 1111211100000 0011356889998864 221
Q ss_pred HHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH----hhCCCEEEEeCCCCC
Q 035832 115 VLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL----VQVPDLLILDEPLAG 190 (245)
Q Consensus 115 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral----~~~p~llllDEPts~ 190 (245)
| . .. ......+.++++. ... .++++.+||+|||||++||+|+ +.+|+++||||||++
T Consensus 83 ---~---~-----~~----~~~~~~~~~~l~~---~~~-~~~~~~~lS~G~k~r~~ia~al~~~~~~~p~illlDEP~~g 143 (198)
T cd03276 83 ---N---P-----LC----VLSQDMARSFLTS---NKA-AVRDVKTLSGGERSFSTVCLLLSLWEVMESPFRCLDEFDVF 143 (198)
T ss_pred ---C---c-----CC----HHHHHHHHHHhcc---ccc-cCCcccccChhHHHHHHHHHHHHHhcccCCCEEEecCcccc
Confidence 1 0 00 0112345566665 443 6889999999999999999999 589999999999999
Q ss_pred CCHHHHHHHHHHHHHhh-c--C-ceEEEEecChhHHHhhccEEEEEeCCe
Q 035832 191 LDWKARADVVKLLKHLK-K--E-LTILVVSHDLKEMAALVDHSWRMDMGG 236 (245)
Q Consensus 191 LD~~~~~~i~~~l~~l~-~--~-~tiii~tHd~~~~~~~~d~v~~l~~G~ 236 (245)
||+..+..+.++|.++. + + .|||++||+++++..+ |+|.+|..++
T Consensus 144 lD~~~~~~~~~~l~~~~~~~~~~~~iii~th~~~~i~~~-d~v~~~~~~~ 192 (198)
T cd03276 144 MDMVNRKISTDLLVKEAKKQPGRQFIFITPQDISGLASS-DDVKVFRMKD 192 (198)
T ss_pred cCHHHHHHHHHHHHHHHhcCCCcEEEEEECCcccccccc-cceeEEEecC
Confidence 99999999999999874 3 3 5899999999999876 9999998643
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.96 E-value=6.8e-30 Score=227.83 Aligned_cols=197 Identities=25% Similarity=0.376 Sum_probs=161.4
Q ss_pred CCcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCC
Q 035832 13 CDYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPE 92 (245)
Q Consensus 13 ~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 92 (245)
-..|+|-+.+|+|.|++ .++.+.+++|-|.--..+||+||||.||||||++|.|-+.|..|+.+-+
T Consensus 582 L~PPvLGlH~VtFgy~g-qkpLFkkldFGiDmdSRiaIVGPNGVGKSTlLkLL~Gkl~P~~GE~RKn------------- 647 (807)
T KOG0066|consen 582 LNPPVLGLHDVTFGYPG-QKPLFKKLDFGIDMDSRIAIVGPNGVGKSTLLKLLIGKLDPNDGELRKN------------- 647 (807)
T ss_pred CCCCeeecccccccCCC-CCchhhcccccccccceeEEECCCCccHHHHHHHHhcCCCCCcchhhcc-------------
Confidence 45778999999999986 4689999999999999999999999999999999999999999987532
Q ss_pred CCCCCcEEEEecCCCCCCC-cccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHH
Q 035832 93 PLPPEKVGIVFQFPERYFV-ADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLAL 171 (245)
Q Consensus 93 ~~~~~~i~~v~Q~~~~~~~-~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~i 171 (245)
.+-+|||.-|+....+. ..|..|.+.-.+.. ..+.++..|-.+||.....--.+..||||||-||++
T Consensus 648 --hrL~iG~FdQh~~E~L~~Eetp~EyLqr~FNl----------pyq~ARK~LG~fGL~sHAHTikikdLSGGQKaRVal 715 (807)
T KOG0066|consen 648 --HRLRIGWFDQHANEALNGEETPVEYLQRKFNL----------PYQEARKQLGTFGLASHAHTIKIKDLSGGQKARVAL 715 (807)
T ss_pred --ceeeeechhhhhHHhhccccCHHHHHHHhcCC----------ChHHHHHHhhhhhhhhccceEeeeecCCcchHHHHH
Confidence 24579999888643332 34667766543211 122356678889997653334678999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeE
Q 035832 172 AIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGF 237 (245)
Q Consensus 172 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i 237 (245)
|-..+..|++|||||||++||.++...+-+.|.++. ..|||||||-.++.+.....|++++..|
T Consensus 716 aeLal~~PDvlILDEPTNNLDIESIDALaEAIney~--GgVi~VsHDeRLi~eT~C~LwVvE~Q~i 779 (807)
T KOG0066|consen 716 AELALGGPDVLILDEPTNNLDIESIDALAEAINEYN--GGVIMVSHDERLIVETDCNLWVVENQGI 779 (807)
T ss_pred HHHhcCCCCEEEecCCCCCcchhhHHHHHHHHHhcc--CcEEEEecccceeeecCceEEEEccCCh
Confidence 999999999999999999999999999999998875 4799999999988877778899887554
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.9e-28 Score=239.64 Aligned_cols=102 Identities=27% Similarity=0.406 Sum_probs=90.9
Q ss_pred HHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh---CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEE
Q 035832 140 LQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ---VPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVV 215 (245)
Q Consensus 140 ~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~---~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~ 215 (245)
..++++.+||....+++++.+|||||+||+.||++|+. +|+++||||||+|||+..+..++++|.++.+ +.|||++
T Consensus 808 ~l~~L~~~gL~~l~l~~~~~tLSgGe~QRl~LA~aL~~~~~~p~llILDEPtsgLD~~~~~~L~~~L~~l~~~G~TVIvi 887 (924)
T TIGR00630 808 KLQTLCDVGLGYIKLGQPATTLSGGEAQRIKLAKELSKRSTGRTLYILDEPTTGLHFDDIKKLLEVLQRLVDQGNTVVVI 887 (924)
T ss_pred HHHHHHHcCCCchhhcCccccCCHHHHHHHHHHHHHhhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 45678889997533689999999999999999999997 5999999999999999999999999999864 6899999
Q ss_pred ecChhHHHhhccEEEEE------eCCeEEEecc
Q 035832 216 SHDLKEMAALVDHSWRM------DMGGFLVEQR 242 (245)
Q Consensus 216 tHd~~~~~~~~d~v~~l------~~G~i~~~~~ 242 (245)
||+++.+. .||+++.| ++|+++..+.
T Consensus 888 ~H~~~~i~-~aD~ii~Lgp~~G~~gG~iv~~G~ 919 (924)
T TIGR00630 888 EHNLDVIK-TADYIIDLGPEGGDGGGTIVASGT 919 (924)
T ss_pred eCCHHHHH-hCCEEEEecCCccCCCCEEEEeCC
Confidence 99999885 79999999 7899987653
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0060 consensus Long-chain acyl-CoA transporter, ABC superfamily (involved in peroxisome organization and biogenesis) [Lipid transport and metabolism; General function prediction only] | Back alignment and domain information |
|---|
Probab=99.96 E-value=2.2e-28 Score=224.01 Aligned_cols=203 Identities=26% Similarity=0.324 Sum_probs=157.3
Q ss_pred CCcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCC
Q 035832 13 CDYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPE 92 (245)
Q Consensus 13 ~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 92 (245)
..+.+|++++|+..-+.+...+++|+||+|.+|+-+.|.||||||||+|+|+++||.+-.+|++..-...
T Consensus 429 ~~Dn~i~~e~v~l~tPt~g~~lie~Ls~~V~~g~~LLItG~sG~GKtSLlRvlggLWp~~~G~l~k~~~~---------- 498 (659)
T KOG0060|consen 429 PADNAIEFEEVSLSTPTNGDLLIENLSLEVPSGQNLLITGPSGCGKTSLLRVLGGLWPSTGGKLTKPTDG---------- 498 (659)
T ss_pred cccceEEeeeeeecCCCCCceeeeeeeeEecCCCeEEEECCCCCchhHHHHHHhcccccCCCeEEecccC----------
Confidence 3456899999999988644457889999999999999999999999999999999999999999763210
Q ss_pred CCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCcc-----CC-----CCCCCCC
Q 035832 93 PLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTS-----LD-----KDPHSLS 162 (245)
Q Consensus 93 ~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-----~~-----~~~~~LS 162 (245)
-.+.+-|+||.| ++...|.+|.+.++........ +....+++.+.|+.++|.+.. ++ .=...||
T Consensus 499 --~~~~lfflPQrP--Ymt~GTLRdQvIYP~~~~~~~~--~~~~d~~i~r~Le~v~L~hl~~r~ggld~~~~~dW~dvLS 572 (659)
T KOG0060|consen 499 --GPKDLFFLPQRP--YMTLGTLRDQVIYPLKAEDMDS--KSASDEDILRILENVQLGHLLEREGGLDQQVDWDWMDVLS 572 (659)
T ss_pred --CCCceEEecCCC--CccccchhheeeccCccccccc--cCCCHHHHHHHHHHhhhhhHHHHhCCCCchhhccHHhhcC
Confidence 014589999999 5777799999998732211110 111123445555555544320 11 1135799
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeC
Q 035832 163 GGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDM 234 (245)
Q Consensus 163 gGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~ 234 (245)
+||+||+++||.+.++|++-+|||.||++|.+....+++.+++. +.|.|-|+|.-.+. .+=|.++.|+.
T Consensus 573 ~GEqQRLa~ARLfy~kPk~AiLDE~TSAv~~dvE~~~Yr~~r~~--giT~iSVgHRkSL~-kfHd~~L~~~g 641 (659)
T KOG0060|consen 573 PGEQQRLAFARLFYHKPKFAILDECTSAVTEDVEGALYRKCREM--GITFISVGHRKSLW-KFHDYVLRMDG 641 (659)
T ss_pred HHHHHHHHHHHHHhcCCceEEeechhhhccHHHHHHHHHHHHHc--CCeEEEeccHHHHH-hhhhEEEEecC
Confidence 99999999999999999999999999999999999999888765 68999999998764 56689999874
|
|
| >KOG0062 consensus ATPase component of ABC transporters with duplicated ATPase domains/Translation elongation factor EF-3b [Amino acid transport and metabolism; Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.96 E-value=1.2e-29 Score=229.72 Aligned_cols=194 Identities=25% Similarity=0.256 Sum_probs=142.2
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
-|.+.+++..|++ +.+|++-++++..|..+||+|+||+|||||||+|+. |.|...... . ..+
T Consensus 80 Di~~~~fdLa~G~--k~LL~~a~L~L~~GrRYGLvGrNG~GKsTLLRaia~------~~v~~f~ve-----q-----E~~ 141 (582)
T KOG0062|consen 80 DIHIDNFDLAYGG--KILLNKANLTLSRGRRYGLVGRNGIGKSTLLRAIAN------GQVSGFHVE-----Q-----EVR 141 (582)
T ss_pred ceeeeeeeeeecc--hhhhcCCceeeecccccceeCCCCCcHHHHHHHHHh------cCcCccCch-----h-----hee
Confidence 4889999999975 568999999999999999999999999999999997 555433211 0 001
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
. .+++-..... ...+.+..+...-... .......+...++|.-+|.++....++..+||||=|.|++|||||.
T Consensus 142 g--~~t~~~~~~l-~~D~~~~dfl~~e~~l----~~~~~l~ei~~~~L~glGFt~emq~~pt~slSGGWrMrlaLARAlf 214 (582)
T KOG0062|consen 142 G--DDTEALQSVL-ESDTERLDFLAEEKEL----LAGLTLEEIYDKILAGLGFTPEMQLQPTKSLSGGWRMRLALARALF 214 (582)
T ss_pred c--cchHHHhhhh-hccHHHHHHHHhhhhh----hccchHHHHHHHHHHhCCCCHHHHhccccccCcchhhHHHHHHHHh
Confidence 0 1222111111 2223333222210000 0000112223338888999876567889999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeE
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGF 237 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i 237 (245)
.+||||||||||+.||..+...+.+.|..+. .|+|+||||-.++-..|..|+.+++-++
T Consensus 215 ~~pDlLLLDEPTNhLDv~av~WLe~yL~t~~--~T~liVSHDr~FLn~V~tdIIH~~~~kL 273 (582)
T KOG0062|consen 215 AKPDLLLLDEPTNHLDVVAVAWLENYLQTWK--ITSLIVSHDRNFLNTVCTDIIHLENLKL 273 (582)
T ss_pred cCCCEEeecCCcccchhHHHHHHHHHHhhCC--ceEEEEeccHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999999999999998875 7999999999999999999988876443
|
|
| >KOG2355 consensus Predicted ABC-type transport, ATPase component/CCR4 associated factor [General function prediction only; Transcription] | Back alignment and domain information |
|---|
Probab=99.95 E-value=1.7e-27 Score=194.28 Aligned_cols=209 Identities=25% Similarity=0.333 Sum_probs=160.8
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCC---
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSP--- 91 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~--- 91 (245)
.-.|++.++.|+|+..+ |++-|+|++++.|....++|.||||||||||+|+|-.-.-.|.|.+.|.+......-..
T Consensus 11 ~~aievsgl~f~y~~~d-P~~~Dfnldlp~gsRcLlVGaNGaGKtTlLKiLsGKhmv~~~~v~VlgrsaFhDt~l~~Sgd 89 (291)
T KOG2355|consen 11 DFAIEVSGLQFKYKVSD-PIFFDFNLDLPAGSRCLLVGANGAGKTTLLKILSGKHMVGGGVVQVLGRSAFHDTSLESSGD 89 (291)
T ss_pred cceEEEeccEEecccCC-ceEEEEeeccCCCceEEEEecCCCchhhhHHHhcCcccccCCeEEEcCcCccccccccccCc
Confidence 44699999999998654 89999999999999999999999999999999999877777999999987543211000
Q ss_pred ----CCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHH
Q 035832 92 ----EPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKR 167 (245)
Q Consensus 92 ----~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkq 167 (245)
...+.+.+++--.-| +...+++. .+.|+.. ...+ ++-+++++.++++ +..+.+.+|-|||+
T Consensus 90 l~YLGgeW~~~~~~agevp--lq~D~sae-~mifgV~----g~dp-----~Rre~LI~iLDId---l~WRmHkvSDGqrR 154 (291)
T KOG2355|consen 90 LSYLGGEWSKTVGIAGEVP--LQGDISAE-HMIFGVG----GDDP-----ERREKLIDILDID---LRWRMHKVSDGQRR 154 (291)
T ss_pred eeEeccccccccccccccc--ccccccHH-HHHhhcc----CCCh-----hHhhhhhhheecc---ceEEEeeccccchh
Confidence 011222333322222 11234444 4445421 1111 2234566777775 35578899999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEE
Q 035832 168 RLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLV 239 (245)
Q Consensus 168 rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~ 239 (245)
||.||+.|++.=++|+|||-|-.||..++..+++.+++-.+ ++||+..||-.+-++..+.+++.|++|+++.
T Consensus 155 RVQicMGLL~PfkVLLLDEVTVDLDVlARadLLeFlkeEce~RgatIVYATHIFDGLe~Wpthl~yi~~Gkl~~ 228 (291)
T KOG2355|consen 155 RVQICMGLLKPFKVLLLDEVTVDLDVLARADLLEFLKEECEQRGATIVYATHIFDGLETWPTHLVYIKSGKLVD 228 (291)
T ss_pred hhHHHHhcccceeEEEeeeeEeehHHHHHHHHHHHHHHHHhhcCcEEEEEeeeccchhhcchhEEEecCCeeee
Confidence 99999999999999999999999999999999999998653 5899999999999999999999999999975
|
|
| >cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes | Back alignment and domain information |
|---|
Probab=99.94 E-value=9.6e-27 Score=193.65 Aligned_cols=144 Identities=19% Similarity=0.239 Sum_probs=109.8
Q ss_pred eeeeeEEEcCCC-EEEEECCCCCcHHHHHHHHh--------CCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecC
Q 035832 35 LNGVSFSLPEKS-FGLIFGRSGSGKTTLLQLLA--------GLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQF 105 (245)
Q Consensus 35 l~~vsl~i~~Ge-~~~liG~nGsGKSTLl~~l~--------Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~ 105 (245)
+-++||++.+|+ +++|+||||||||||+|+|+ |...|.... ..++|+.|.
T Consensus 17 ~~~~~~~i~~~~~~~~ltG~Ng~GKStll~~i~~~~~~~~~G~~vp~~~~---------------------~~~~~~~~~ 75 (200)
T cd03280 17 VVPLDIQLGENKRVLVITGPNAGGKTVTLKTLGLLTLMAQSGLPIPAAEG---------------------SSLPVFENI 75 (200)
T ss_pred eEcceEEECCCceEEEEECCCCCChHHHHHHHHHHHHHHHcCCCcccccc---------------------ccCcCccEE
Confidence 568999999995 89999999999999999998 444332110 112332222
Q ss_pred CCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEe
Q 035832 106 PERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILD 185 (245)
Q Consensus 106 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllD 185 (245)
.. .++..+. .++...++|+||+|++.+++++ .+|+++|+|
T Consensus 76 ~~--------------------------------------~lg~~~~-l~~~~s~fs~g~~~~~~i~~~~-~~p~llllD 115 (200)
T cd03280 76 FA--------------------------------------DIGDEQS-IEQSLSTFSSHMKNIARILQHA-DPDSLVLLD 115 (200)
T ss_pred EE--------------------------------------ecCchhh-hhcCcchHHHHHHHHHHHHHhC-CCCcEEEEc
Confidence 10 0111111 3455678999999999999884 899999999
Q ss_pred CCCCCCCHHHHHHHH-HHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEe
Q 035832 186 EPLAGLDWKARADVV-KLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240 (245)
Q Consensus 186 EPts~LD~~~~~~i~-~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~ 240 (245)
|||+|||+..+..++ .+++.+.+ +.++|++||+. .+..+||+++.|++|+++.+
T Consensus 116 Ep~~glD~~~~~~i~~~~l~~l~~~~~~vi~~tH~~-~l~~~~d~~~~l~~g~l~~~ 171 (200)
T cd03280 116 ELGSGTDPVEGAALAIAILEELLERGALVIATTHYG-ELKAYAYKREGVENASMEFD 171 (200)
T ss_pred CCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEECCHH-HHHHHHhcCCCeEEEEEEEe
Confidence 999999999999996 46777764 68999999995 46789999999999999765
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a |
| >cd03277 ABC_SMC5_euk Eukaryotic SMC5 proteins; SMC proteins are large (approximately 110 to 170 kDa), and each is arranged into five recognizable domains | Back alignment and domain information |
|---|
Probab=99.94 E-value=2.3e-26 Score=193.21 Aligned_cols=190 Identities=15% Similarity=0.115 Sum_probs=113.7
Q ss_pred eeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCccc
Q 035832 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADN 114 (245)
Q Consensus 35 l~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~t 114 (245)
++++.+++.+| +.+|+|||||||||||.+|.-.+-...... ......... .........|-..++..... -
T Consensus 14 ~~~~~i~~~~g-~n~i~G~NgsGKS~lleAi~~~l~~~~~~~-~r~~~~~~~---i~~g~~~~~v~~~~~~~~~~----~ 84 (213)
T cd03277 14 YDETEFRPGPS-LNMIIGPNGSGKSSIVCAICLGLGGKPKLL-GRAKKVGEF---VKRGCDEGTIEIELYGNPGN----I 84 (213)
T ss_pred cceeEEecCCC-eEEEECCCCCCHHHHHHHHHHHhcCCcccc-ccccCHHHH---hhCCCCcEEEEEEEEeCCCc----c
Confidence 46667777665 778999999999999999877663221100 000000000 00000012233344332110 1
Q ss_pred HHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH----hhCCCEEEEeCCCCC
Q 035832 115 VLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL----VQVPDLLILDEPLAG 190 (245)
Q Consensus 115 v~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral----~~~p~llllDEPts~ 190 (245)
..+|+.+... .. ...+.....-.+.+..+.-.....+..+.+||+|||||+.+|+++ +.+|+++|+||||++
T Consensus 85 ~~~n~~~~~~---q~-~~~~~~~~~~~e~l~~~~~~~~~~~~~~~~LS~G~~q~~~i~~~la~~~~~~p~llllDEP~~~ 160 (213)
T cd03277 85 QVDNLCQFLP---QD-RVGEFAKLSPIELLVKFREGEQLQELDPHHQSGGERSVSTMLYLLSLQELTRCPFRVVDEINQG 160 (213)
T ss_pred ccCCceEEEc---hH-HHHHHHhCChHhHheeeecCCCccccchhhccccHHHHHHHHHHHHHHhccCCCEEEEeccccc
Confidence 1122221100 00 000001111122332332211124678899999999999877654 589999999999999
Q ss_pred CCHHHHHHHHHHHHHhhc--C-ceEEEEecChhHHHhhcc--EEEEEeCCeE
Q 035832 191 LDWKARADVVKLLKHLKK--E-LTILVVSHDLKEMAALVD--HSWRMDMGGF 237 (245)
Q Consensus 191 LD~~~~~~i~~~l~~l~~--~-~tiii~tHd~~~~~~~~d--~v~~l~~G~i 237 (245)
||+..+..+++.|.++.+ + .++|++||++.....+|| +|++|++|+-
T Consensus 161 LD~~~~~~i~~~l~~~~~~~g~~~viiith~~~~~~~~~~~~~v~~l~~g~~ 212 (213)
T cd03277 161 MDPTNERKVFDMLVETACKEGTSQYFLITPKLLPGLNYHEKMTVLCVYNGPH 212 (213)
T ss_pred CCHHHHHHHHHHHHHHhhcCCCceEEEEchhhccCCcccCceEEEEEecCcc
Confidence 999999999999999853 4 589999999988888876 7888888874
|
Amino-acid sequence homology of SMC proteins between species is largely confined to the amino- and carboxy-terminal globular domains. The amino-terminal domain contains a 'Walker A' nucleotide-binding domain (GxxGxGKS/T, in the single-letter amino-acid code), which by mutational studies has been shown to be essential in several proteins. The carboxy-terminal domain contains a sequence (the DA-box) that resembles a 'Walker B' motif, and a motif with homology to the signature sequence of the ATP-binding cassette (ABC) family of ATPases. The sequence homology within the carboxy-terminal domain is relatively high within the SMC1-SMC4 group, whereas SMC5 and SMC6 show some divergence in both of these sequences. In eukaryotic cells, the proteins are found as heterodimers of SMC1 paired with SMC3, SMC2 with SMC4, and SMC5 with SMC6 (for |
| >KOG0064 consensus Peroxisomal long-chain acyl-CoA transporter, ABC superfamily [Lipid transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.93 E-value=3.4e-26 Score=207.73 Aligned_cols=184 Identities=22% Similarity=0.406 Sum_probs=140.2
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
-|.++|+-.--+.++ .++..++|.|++|-.+.|+||||||||+|+|+|.|+.|...|...+ + +.
T Consensus 481 gI~lenIpvItP~~~-vvv~~Ltf~i~~G~hLLItGPNGCGKSSLfRILggLWPvy~g~L~~--------P-------~~ 544 (728)
T KOG0064|consen 481 GIILENIPVITPAGD-VLVPKLTFQIEPGMHLLITGPNGCGKSSLFRILGGLWPVYNGLLSI--------P-------RP 544 (728)
T ss_pred ceEEecCceeccCcc-eeecceeEEecCCceEEEECCCCccHHHHHHHHhccCcccCCeeec--------C-------CC
Confidence 388999988877654 5889999999999999999999999999999999999987776654 1 13
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCC---------CCCCChHHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKD---------PHSLSGGYKR 167 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~---------~~~LSgGqkq 167 (245)
.++-|+||.| ++...|.+|.+.++... .....+...++.+..+|..+.|++. +.+. -..|||||||
T Consensus 545 ~~mFYIPQRP--Yms~gtlRDQIIYPdS~--e~~~~kg~~d~dL~~iL~~v~L~~i-~qr~~g~da~~dWkd~LsgGekQ 619 (728)
T KOG0064|consen 545 NNIFYIPQRP--YMSGGTLRDQIIYPDSS--EQMKRKGYTDQDLEAILDIVHLEHI-LQREGGWDAVRDWKDVLSGGEKQ 619 (728)
T ss_pred cceEeccCCC--ccCcCcccceeecCCcH--HHHHhcCCCHHHHHHHHHHhhHHHH-HHhccChhhhccHHhhccchHHH
Confidence 4699999999 55667888888875210 0000011112234455555555432 2222 2469999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHH
Q 035832 168 RLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMA 223 (245)
Q Consensus 168 rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~ 223 (245)
|+++||.+.+.|+..+|||.||+..+.....+++..++. +.+.|-|||.+....
T Consensus 620 R~~mARm~yHrPkyalLDEcTsAvsidvE~~i~~~ak~~--gi~llsithrpslwk 673 (728)
T KOG0064|consen 620 RMGMARMFYHRPKYALLDECTSAVSIDVEGKIFQAAKDA--GISLLSITHRPSLWK 673 (728)
T ss_pred HHHHHHHHhcCcchhhhhhhhcccccchHHHHHHHHHhc--CceEEEeecCccHHH
Confidence 999999999999999999999999999998888877654 689999999998754
|
|
| >COG1245 Predicted ATPase, RNase L inhibitor (RLI) homolog [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=8.3e-25 Score=196.06 Aligned_cols=204 Identities=25% Similarity=0.324 Sum_probs=138.6
Q ss_pred cCCcceEEEEe--------EEEECCCCccceeeeeeEE-EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEE-----
Q 035832 12 SCDYSCLEVRD--------VSYRPPGTQVDILNGVSFS-LPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN----- 77 (245)
Q Consensus 12 ~~~~~~l~~~~--------l~~~y~~~~~~il~~vsl~-i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~----- 77 (245)
.|+...|.+-| +..+|+.+. ++=..|- ..+|+++||+||||-||||-+|+|+|.++|.=|+..
T Consensus 61 kCPF~AI~IvnLP~eLe~e~vHRYg~Ng---FkL~~LP~pr~G~V~GilG~NGiGKsTalkILaGel~PNLG~~~~pp~w 137 (591)
T COG1245 61 KCPFDAISIVNLPEELEEEVVHRYGVNG---FKLYRLPTPRPGKVVGILGPNGIGKSTALKILAGELKPNLGRYEDPPSW 137 (591)
T ss_pred cCCcceEEEecCchhhcccceeeccCCc---eEEecCCCCCCCcEEEEEcCCCccHHHHHHHHhCccccCCCCCCCCCCH
Confidence 45555566655 356776432 3333333 358999999999999999999999999999755431
Q ss_pred ------EcCccCCCCCCCCCCCCCCCcEEEEecCCCCC--CCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCC
Q 035832 78 ------IRGYNNDGEPNNSPEPLPPEKVGIVFQFPERY--FVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGL 149 (245)
Q Consensus 78 ------~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l 149 (245)
|.|..+...-..... -.-++..=+|..+.. ....+|.|-+.- ....-..+++++.++|
T Consensus 138 deVi~~FrGtELq~YF~~l~~--g~~r~v~K~QYVd~iPk~~KG~v~elLk~------------~de~g~~devve~l~L 203 (591)
T COG1245 138 DEVIKRFRGTELQNYFKKLYE--GELRAVHKPQYVDLIPKVVKGKVGELLKK------------VDERGKFDEVVERLGL 203 (591)
T ss_pred HHHHHHhhhhHHHHHHHHHHc--CCcceecchHHHHHHHHHhcchHHHHHHh------------hhhcCcHHHHHHHhcc
Confidence 001000000000000 000111112221100 001122222211 0111246778999999
Q ss_pred CCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccE
Q 035832 150 DGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDH 228 (245)
Q Consensus 150 ~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~ 228 (245)
.+. +++.+++|||||-||++||.|++.+++++++|||||-||...+-...+.++++.+ +++||+|.||+..+.-++|.
T Consensus 204 ~nv-l~r~v~~LSGGELQr~aIaa~l~rdADvY~FDEpsSyLDi~qRl~~ar~Irel~~~~k~ViVVEHDLavLD~lsD~ 282 (591)
T COG1245 204 ENV-LDRDVSELSGGELQRVAIAAALLRDADVYFFDEPSSYLDIRQRLNAARVIRELAEDGKYVIVVEHDLAVLDYLSDF 282 (591)
T ss_pred hhh-hhhhhhhcCchHHHHHHHHHHHhccCCEEEEcCCcccccHHHHHHHHHHHHHHhccCCeEEEEechHHHHHHhhhe
Confidence 986 7999999999999999999999999999999999999999999999999999987 59999999999988888999
Q ss_pred EEEEe
Q 035832 229 SWRMD 233 (245)
Q Consensus 229 v~~l~ 233 (245)
|.++-
T Consensus 283 vhI~Y 287 (591)
T COG1245 283 VHILY 287 (591)
T ss_pred eEEEe
Confidence 88875
|
|
| >cd03239 ABC_SMC_head The structural maintenance of chromosomes (SMC) proteins are essential for successful chromosome transmission during replication and segregation of the genome in all organisms | Back alignment and domain information |
|---|
Probab=99.92 E-value=5.7e-24 Score=173.94 Aligned_cols=73 Identities=27% Similarity=0.316 Sum_probs=67.4
Q ss_pred CChHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeC
Q 035832 161 LSGGYKRRLALAIQLV----QVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDM 234 (245)
Q Consensus 161 LSgGqkqrv~iAral~----~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~ 234 (245)
||+||+||++|||+++ .+|+++++|||+++||+..+..+.+.|.++.+ +.++|++||+.+.+ ..+|+++.+..
T Consensus 95 LS~Ge~~r~~Laral~~~~~~~p~llilDEp~~~LD~~~~~~i~~~L~~~~~~g~tiIiiSH~~~~~-~~adrvi~i~~ 172 (178)
T cd03239 95 LSGGEKSLSALALIFALQEIKPSPFYVLDEIDAALDPTNRRRVSDMIKEMAKHTSQFIVITLKKEMF-ENADKLIGVLF 172 (178)
T ss_pred CCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEECCHHHH-hhCCeEEEEEE
Confidence 9999999999999996 69999999999999999999999999999865 48999999999876 58999999975
|
SMCs are generally present as single proteins in bacteria, and as at least six distinct proteins in eukaryotes. The proteins range in size from approximately 110 to 170 kDa, and each has five distinct domains: amino- and carboxy-terminal globular domains, which contain sequences characteristic of ATPases, two coiled-coil regions separating the terminal domains , and a central flexible hinge. SMC proteins function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair, and epigenetic silencing of gene expression. |
| >COG2401 ABC-type ATPase fused to a predicted acetyltransferase domain [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.92 E-value=3.3e-24 Score=190.43 Aligned_cols=184 Identities=26% Similarity=0.347 Sum_probs=148.2
Q ss_pred cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCC--------CCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEe
Q 035832 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGL--------SKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVF 103 (245)
Q Consensus 32 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl--------~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~ 103 (245)
..+++|+||++++|++++|+|+|||||||+|++|+|. ++|++|.|.+--.. --+++|
T Consensus 396 ryvlr~vNL~ikpGdvvaVvGqSGaGKttllRmi~G~~~~~~ee~y~p~sg~v~vp~nt---------------~~a~iP 460 (593)
T COG2401 396 RYVLRNLNLEIKPGDVVAVVGQSGAGKTTLLRMILGAQKGRGEEKYRPDSGKVEVPKNT---------------VSALIP 460 (593)
T ss_pred eeeeeceeeEecCCCeEEEEecCCCCcchHHHHHHHHhhcccccccCCCCCceeccccc---------------hhhccC
Confidence 4689999999999999999999999999999999997 57889988762111 123555
Q ss_pred cCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCc-cCCCCCCCCChHHHHHHHHHHHHhhCCCEE
Q 035832 104 QFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGT-SLDKDPHSLSGGYKRRLALAIQLVQVPDLL 182 (245)
Q Consensus 104 Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~~LSgGqkqrv~iAral~~~p~ll 182 (245)
-..+..|...|+.|.+.-. .+. -..+.++|+..|+.+. ...+++++||-|||.|+.||++++..|.++
T Consensus 461 ge~Ep~f~~~tilehl~s~----tGD-------~~~AveILnraGlsDAvlyRr~f~ELStGQKeR~KLAkllaerpn~~ 529 (593)
T COG2401 461 GEYEPEFGEVTILEHLRSK----TGD-------LNAAVEILNRAGLSDAVLYRRKFSELSTGQKERAKLAKLLAERPNVL 529 (593)
T ss_pred cccccccCchhHHHHHhhc----cCc-------hhHHHHHHHhhccchhhhhhccHhhcCcchHHHHHHHHHHhcCCCcE
Confidence 5544445555777766432 111 1134577888999763 235678999999999999999999999999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhh-ccEEEEEeCCeEEEec
Q 035832 183 ILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAAL-VDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 183 llDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~-~d~v~~l~~G~i~~~~ 241 (245)
+.||-.|.||+.+...+..-|.++++ +.|++++||+.+....+ .|.++.+.-|+...+.
T Consensus 530 ~iDEF~AhLD~~TA~rVArkiselaRe~giTlivvThrpEv~~AL~PD~li~vgYg~v~~~e 591 (593)
T COG2401 530 LIDEFAAHLDELTAVRVARKISELAREAGITLIVVTHRPEVGNALRPDTLILVGYGKVPVNE 591 (593)
T ss_pred EhhhhhhhcCHHHHHHHHHHHHHHHHHhCCeEEEEecCHHHHhccCCceeEEeecccccccC
Confidence 99999999999999999999999974 68999999999999888 7999999888776543
|
|
| >cd03283 ABC_MutS-like MutS-like homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.90 E-value=6.3e-24 Score=176.62 Aligned_cols=145 Identities=23% Similarity=0.248 Sum_probs=104.7
Q ss_pred cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCC
Q 035832 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFV 111 (245)
Q Consensus 32 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~ 111 (245)
..+++|++|+. |++++|+||||||||||+|+|+|... +.+.|.++.. + .+++| +..+|.
T Consensus 14 ~~v~n~i~l~~--g~~~~ltGpNg~GKSTllr~i~~~~~-----l~~~G~~v~a-----------~--~~~~q-~~~l~~ 72 (199)
T cd03283 14 KRVANDIDMEK--KNGILITGSNMSGKSTFLRTIGVNVI-----LAQAGAPVCA-----------S--SFELP-PVKIFT 72 (199)
T ss_pred CeecceEEEcC--CcEEEEECCCCCChHHHHHHHHHHHH-----HHHcCCEEec-----------C--ccCcc-cceEEE
Confidence 35778887775 79999999999999999999988553 1234443311 1 36677 445778
Q ss_pred cccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 035832 112 ADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGL 191 (245)
Q Consensus 112 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~L 191 (245)
..|+.||+.++... ...+. .++.++++.+++ .+|+++|+||||+|+
T Consensus 73 ~~~~~d~l~~~~s~------~~~e~-~~~~~iL~~~~~---------------------------~~p~llllDEp~~gl 118 (199)
T cd03283 73 SIRVSDDLRDGISY------FYAEL-RRLKEIVEKAKK---------------------------GEPVLFLLDEIFKGT 118 (199)
T ss_pred eccchhccccccCh------HHHHH-HHHHHHHHhccC---------------------------CCCeEEEEecccCCC
Confidence 88999999886311 11222 346667766552 799999999999999
Q ss_pred CHHHHHHHH-HHHHHhhc-CceEEEEecChhHHHhh--ccEEEE
Q 035832 192 DWKARADVV-KLLKHLKK-ELTILVVSHDLKEMAAL--VDHSWR 231 (245)
Q Consensus 192 D~~~~~~i~-~~l~~l~~-~~tiii~tHd~~~~~~~--~d~v~~ 231 (245)
|+..+..+. .+++.+.+ +.++|++||+++++... .++|-.
T Consensus 119 D~~~~~~l~~~ll~~l~~~~~tiiivTH~~~~~~~~~~~~~v~~ 162 (199)
T cd03283 119 NSRERQAASAAVLKFLKNKNTIGIISTHDLELADLLDLDSAVRN 162 (199)
T ss_pred CHHHHHHHHHHHHHHHHHCCCEEEEEcCcHHHHHhhhcCCCeEE
Confidence 999998775 46777754 58999999999988765 344433
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid |
| >cd03241 ABC_RecN RecN ATPase involved in DNA repair; ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules | Back alignment and domain information |
|---|
Probab=99.90 E-value=3.3e-23 Score=180.51 Aligned_cols=77 Identities=29% Similarity=0.349 Sum_probs=69.8
Q ss_pred CCCChHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeC
Q 035832 159 HSLSGGYKRRLALAIQLVQ----VPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDM 234 (245)
Q Consensus 159 ~~LSgGqkqrv~iAral~~----~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~ 234 (245)
..|||||+||++||++++. +|+++++||||++||+..+..+.+.|.++.++.|+|++||+++. ..+||++++|.+
T Consensus 169 ~~lS~G~~~r~~la~~~~~~~~~~p~vlllDEp~~~Ld~~~~~~l~~~l~~~~~~~tii~isH~~~~-~~~~d~~~~l~~ 247 (276)
T cd03241 169 KIASGGELSRLMLALKAILARKDAVPTLIFDEIDTGISGEVAQAVGKKLKELSRSHQVLCITHLPQV-AAMADNHFLVEK 247 (276)
T ss_pred hhcChhHHHHHHHHHHHHHhcCCCCCEEEEECCccCCCHHHHHHHHHHHHHHhCCCEEEEEechHHH-HHhcCcEEEEEE
Confidence 3499999999999997654 99999999999999999999999999998777899999999985 579999999987
Q ss_pred Ce
Q 035832 235 GG 236 (245)
Q Consensus 235 G~ 236 (245)
+.
T Consensus 248 ~~ 249 (276)
T cd03241 248 EV 249 (276)
T ss_pred ec
Confidence 63
|
The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport | Back alignment and domain information |
|---|
Probab=99.90 E-value=4.7e-23 Score=166.00 Aligned_cols=139 Identities=26% Similarity=0.275 Sum_probs=102.2
Q ss_pred eeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEE-EEecCCCCCCCcc
Q 035832 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVG-IVFQFPERYFVAD 113 (245)
Q Consensus 35 l~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~-~v~Q~~~~~~~~~ 113 (245)
....++.+.++.+++|+|||||||||+++.+....-..+|.+.... + .+.| ++++... .+
T Consensus 11 ~~~~~i~~~~~~~~~i~G~NgsGKS~~l~~i~~~~~~~~~~~~~~~-~--------------~~~g~~~~~~~~-~~--- 71 (162)
T cd03227 11 FVPNDVTFGEGSLTIITGPNGSGKSTILDAIGLALGGAQSATRRRS-G--------------VKAGCIVAAVSA-EL--- 71 (162)
T ss_pred EeccEEecCCCCEEEEECCCCCCHHHHHHHHHHHHHhcchhhhccC-c--------------ccCCCcceeeEE-EE---
Confidence 3455566666779999999999999999998877655555443210 0 0011 1111100 00
Q ss_pred cHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh----CCCEEEEeCCCC
Q 035832 114 NVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ----VPDLLILDEPLA 189 (245)
Q Consensus 114 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~----~p~llllDEPts 189 (245)
+. ...+||+||+||++||++|+. +|+++|+|||++
T Consensus 72 -----------------------------------i~------~~~~lS~G~~~~~~la~~L~~~~~~~~~llllDEp~~ 110 (162)
T cd03227 72 -----------------------------------IF------TRLQLSGGEKELSALALILALASLKPRPLYILDEIDR 110 (162)
T ss_pred -----------------------------------eh------heeeccccHHHHHHHHHHHHhcCCCCCCEEEEeCCCC
Confidence 00 001299999999999999987 789999999999
Q ss_pred CCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeC
Q 035832 190 GLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDM 234 (245)
Q Consensus 190 ~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~ 234 (245)
|+|+..+..+.+.+.++.. +.++|++||+.+.+. .+|+++.|..
T Consensus 111 gld~~~~~~l~~~l~~~~~~~~~vii~TH~~~~~~-~~d~~~~l~~ 155 (162)
T cd03227 111 GLDPRDGQALAEAILEHLVKGAQVIVITHLPELAE-LADKLIHIKK 155 (162)
T ss_pred CCCHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHH-hhhhEEEEEE
Confidence 9999999999999988754 589999999999765 6899999974
|
These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins. |
| >KOG0065 consensus Pleiotropic drug resistance proteins (PDR1-15), ABC superfamily [Secondary metabolites biosynthesis, transport and catabolism] | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.8e-23 Score=205.19 Aligned_cols=203 Identities=26% Similarity=0.294 Sum_probs=162.0
Q ss_pred cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC---CcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCC
Q 035832 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP---TSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPER 108 (245)
Q Consensus 32 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p---~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~ 108 (245)
..+++|+|.-+++|+.+.++||.||||||||++++|-+.- ..|+|.++|.+..... .++.++|+.|+. .
T Consensus 128 ~~il~~~sg~~~pg~m~lvLG~pgsG~ttllkal~g~~~~~~~~~~~isy~G~~~~e~~-------~~~~~aY~~e~D-v 199 (1391)
T KOG0065|consen 128 IQILKDISGIIKPGEMTLVLGPPGSGKTTLLKALAGKLDNFLKSSGEITYNGHDLKEFV-------PKKTVAYNSEQD-V 199 (1391)
T ss_pred ceeecCcceeEcCCceEEEecCCCCchHHHHHHHhCCCcccccCCCceeECCCcccccc-------cCceEEeccccc-c
Confidence 4699999999999999999999999999999999998753 2579999998865432 146799999996 4
Q ss_pred CCCcccHHHHHHhcCCCCCC----chhHHHH-HHHHHHHHHHHcCCCCcc----CCCCCCCCChHHHHHHHHHHHHhhCC
Q 035832 109 YFVADNVLDEVIFGWPRQSG----SIQLKEY-LALNLQRAINWVGLDGTS----LDKDPHSLSGGYKRRLALAIQLVQVP 179 (245)
Q Consensus 109 ~~~~~tv~e~l~~~~~~~~~----~~~~~~~-~~~~~~~~l~~~~l~~~~----~~~~~~~LSgGqkqrv~iAral~~~p 179 (245)
.++.+||+|-+.|...-... ....+.+ .....+.+++.+||+... -|......|||||+||++|-+++.+|
T Consensus 200 H~p~lTVreTldFa~rck~~~~r~~~~~R~e~~~~~~d~~lkilGL~~~~dT~VGnd~~RGvSGGerKRvsi~E~~v~~~ 279 (1391)
T KOG0065|consen 200 HFPELTVRETLDFAARCKGPGSRYDEVSRREKLAAMTDYLLKILGLDHCADTLVGNDMVRGVSGGERKRVSIGEMLVGPA 279 (1391)
T ss_pred ccceeEEeehhhHHHhccCCccccccccHHHHHHHHHHHHHHHhCchhhccceecccccccccCcccceeeeeeeeecCc
Confidence 78999999999886321111 0011111 122456789999998641 24456679999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecC-hhHHHhhccEEEEEeCCeEEEecc
Q 035832 180 DLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHD-LKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 180 ~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd-~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
+++.+||+|.|||..+.-++.+.|+.+.. +.|.+++-|. .+++..+.|.|++|.+|+++..+.
T Consensus 280 ~~~~~De~t~GLDSsTal~iik~lr~~a~~~~~t~~vsi~Q~s~~~~~lFD~v~lL~eG~~iy~Gp 345 (1391)
T KOG0065|consen 280 SILFWDEITRGLDSSTAFQIIKALRQLAHITGATALVSILQPSPEIYDLFDDVILLSEGYQIYQGP 345 (1391)
T ss_pred ceeeeecccccccHHHHHHHHHHHHHHHhhhcceEEEEeccCChHHHHhhhheeeeeccceEEecc
Confidence 99999999999999999999999999864 4666666664 456778899999999999998763
|
|
| >cd03285 ABC_MSH2_euk MutS2 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.89 E-value=7.6e-24 Score=178.97 Aligned_cols=150 Identities=19% Similarity=0.161 Sum_probs=111.8
Q ss_pred cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEE-EEecCCCCCC
Q 035832 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVG-IVFQFPERYF 110 (245)
Q Consensus 32 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~-~v~Q~~~~~~ 110 (245)
..+.+|++|++.++++++|.||||+|||||+++++-. .+ ..++| |||.+.. .+
T Consensus 17 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~--------~~-----------------la~~g~~vpa~~~-~~ 70 (222)
T cd03285 17 AFIPNDVTLTRGKSRFLIITGPNMGGKSTYIRQIGVI--------VL-----------------MAQIGCFVPCDSA-DI 70 (222)
T ss_pred CeEEeeEEEeecCCeEEEEECCCCCChHHHHHHHHHH--------HH-----------------HHHhCCCcCcccE-EE
Confidence 3589999999999999999999999999999999821 00 12344 5554431 11
Q ss_pred CcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH--hhCCCEEEEeCC-
Q 035832 111 VADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL--VQVPDLLILDEP- 187 (245)
Q Consensus 111 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral--~~~p~llllDEP- 187 (245)
.. +++++..+++.+. ....+|.|++|++.+++++ +.+|+++|||||
T Consensus 71 ---~~------------------------~~~il~~~~l~d~----~~~~lS~~~~e~~~~a~il~~~~~~sLvLLDEp~ 119 (222)
T cd03285 71 ---PI------------------------VDCILARVGASDS----QLKGVSTFMAEMLETAAILKSATENSLIIIDELG 119 (222)
T ss_pred ---ec------------------------cceeEeeeccccc----hhcCcChHHHHHHHHHHHHHhCCCCeEEEEecCc
Confidence 00 1123344555432 2568999999999999999 999999999999
Q ss_pred --CCCCCHHHHHHHHHHHHHhh--cCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 188 --LAGLDWKARADVVKLLKHLK--KELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 188 --ts~LD~~~~~~i~~~l~~l~--~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|++||+.+.... +++.+. .+.++|++||+ .++.++||++..+++|++....
T Consensus 120 ~gT~~lD~~~~~~~--il~~l~~~~~~~vlisTH~-~el~~~~~~~~~i~~g~~~~~~ 174 (222)
T cd03285 120 RGTSTYDGFGLAWA--IAEYIATQIKCFCLFATHF-HELTALADEVPNVKNLHVTALT 174 (222)
T ss_pred CCCChHHHHHHHHH--HHHHHHhcCCCeEEEEech-HHHHHHhhcCCCeEEEEEEEEE
Confidence 999999988543 334443 35899999996 6678899999999999887644
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.2e-22 Score=169.20 Aligned_cols=151 Identities=15% Similarity=0.109 Sum_probs=101.9
Q ss_pred eeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcc
Q 035832 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLS-KPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVAD 113 (245)
Q Consensus 35 l~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ 113 (245)
+-..++++.+|++++|+||||||||||+++|++.. .+..|..... .+..+++..|.. ...
T Consensus 19 ~~~~~~~l~~~~~~~l~G~Ng~GKStll~~i~~~~~~~~~g~~~~~---------------~~~~i~~~dqi~----~~~ 79 (202)
T cd03243 19 FVPNDINLGSGRLLLITGPNMGGKSTYLRSIGLAVLLAQIGCFVPA---------------ESASIPLVDRIF----TRI 79 (202)
T ss_pred eEeeeEEEcCCeEEEEECCCCCccHHHHHHHHHHHHHHHcCCCccc---------------cccccCCcCEEE----EEe
Confidence 34556667789999999999999999999999543 2223322110 012233322211 000
Q ss_pred cHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 035832 114 NVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDW 193 (245)
Q Consensus 114 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~ 193 (245)
+..+. .......+|.+++| +..+.+++.+|+++|+||||+|+|+
T Consensus 80 ----------------------------------~~~d~-i~~~~s~~~~e~~~-l~~i~~~~~~~~llllDEp~~gld~ 123 (202)
T cd03243 80 ----------------------------------GAEDS-ISDGRSTFMAELLE-LKEILSLATPRSLVLIDELGRGTST 123 (202)
T ss_pred ----------------------------------cCccc-ccCCceeHHHHHHH-HHHHHHhccCCeEEEEecCCCCCCH
Confidence 11111 23344567777766 6666788899999999999999999
Q ss_pred HHHHHHHH-HHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 194 KARADVVK-LLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 194 ~~~~~i~~-~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
..+..+.. +++.+.+ +.++|++||+.+.+ ..|+++..+..+++..+.
T Consensus 124 ~~~~~l~~~ll~~l~~~~~~vi~~tH~~~~~-~~~~~~~~l~~~~~~~~~ 172 (202)
T cd03243 124 AEGLAIAYAVLEHLLEKGCRTLFATHFHELA-DLPEQVPGVKNLHMEELI 172 (202)
T ss_pred HHHHHHHHHHHHHHHhcCCeEEEECChHHHH-HHhhcCCCeEEEEEEEEe
Confidence 98888755 5566654 68999999998765 578888888888876554
|
Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru |
| >PRK00635 excinuclease ABC subunit A; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.2e-21 Score=198.25 Aligned_cols=103 Identities=24% Similarity=0.252 Sum_probs=91.2
Q ss_pred HHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEE
Q 035832 139 NLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQV---PDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILV 214 (245)
Q Consensus 139 ~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~---p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii 214 (245)
+..+.|..+||....+.++..+|||||.||+-||.-|..+ +.+++|||||.||++...+.+++.|.++.. +.|||+
T Consensus 1678 ~~L~~L~~vGLgYl~LGq~~~tLSGGE~qRikLa~~l~~~~~~~~lyilDEPt~GLh~~d~~~Ll~~l~~L~~~g~tviv 1757 (1809)
T PRK00635 1678 KPLQALIDNGLGYLPLGQNLSSLSLSEKIAIKIAKFLYLPPKHPTLFLLDEIATSLDNQQKSALLVQLRTLVSLGHSVIY 1757 (1809)
T ss_pred HHHHHHHHcCCCeeeCCCcCCccCchHHHHHHHHHHHhcCCCCCcEEEEcCCCCCCCHHHHHHHHHHHHHHHhcCCeEEE
Confidence 3456788899998888999999999999999999999876 799999999999999999999999999964 699999
Q ss_pred EecChhHHHhhccEEEEEe------CCeEEEecc
Q 035832 215 VSHDLKEMAALVDHSWRMD------MGGFLVEQR 242 (245)
Q Consensus 215 ~tHd~~~~~~~~d~v~~l~------~G~i~~~~~ 242 (245)
|.||++.+.. ||+++-|- .|+|++++.
T Consensus 1758 ieH~~~~i~~-aD~iidlgp~gG~~GG~iva~Gt 1790 (1809)
T PRK00635 1758 IDHDPALLKQ-ADYLIEMGPGSGKTGGKILFSGP 1790 (1809)
T ss_pred EeCCHHHHHh-CCEEEEcCCCcccCCCEEEEEeC
Confidence 9999998765 99999994 367777664
|
|
| >KOG0066 consensus eIF2-interacting protein ABC50 (ABC superfamily) [Translation, ribosomal structure and biogenesis] | Back alignment and domain information |
|---|
Probab=99.87 E-value=1.1e-22 Score=181.87 Aligned_cols=214 Identities=20% Similarity=0.254 Sum_probs=144.7
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCC--CCCCcceEEEcCccCCCCCCCCCC--
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGL--SKPTSGSINIRGYNNDGEPNNSPE-- 92 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~~~~~~-- 92 (245)
-|+++|.+.+-.+ +..+.|.||.|-.|..++|+||||-||||||+-|+.- --|..=.|.++.+.+-..+.....
T Consensus 264 DIKiEnF~ISA~G--k~LFvnA~L~Iv~GRRYGLVGPNG~GKTTLLkHIa~RalaIPpnIDvLlCEQEvvad~t~Ai~tv 341 (807)
T KOG0066|consen 264 DIKIENFDISAQG--KLLFVNASLTIVYGRRYGLVGPNGMGKTTLLKHIAARALAIPPNIDVLLCEQEVVADSTSAIDTV 341 (807)
T ss_pred cceeeeeeeeccc--ceeeeccceEEEecceecccCCCCCchHHHHHHHHhhhccCCCCCceEeeeeeeeecCcHHHHHH
Confidence 4899999988754 4689999999999999999999999999999999753 123333455554433211100000
Q ss_pred -CCCCCcEEEEecCCC--CCC--CcccHHHHHHhcCC--CCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHH
Q 035832 93 -PLPPEKVGIVFQFPE--RYF--VADNVLDEVIFGWP--RQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGY 165 (245)
Q Consensus 93 -~~~~~~i~~v~Q~~~--~~~--~~~tv~e~l~~~~~--~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq 165 (245)
..-.++..++-.... ..+ ...|+.|.+.-.+. +..+ ....+.+++.+|.-+|.+...-+++...+|||-
T Consensus 342 l~aD~kRl~lLeee~~L~~q~e~Gd~taaErl~~v~~ELraiG----A~sAEarARRILAGLGFskEMQ~rPt~kFSGGW 417 (807)
T KOG0066|consen 342 LKADKKRLALLEEEAKLMSQIEEGDTTAAERLKEVADELRAIG----ADSAEARARRILAGLGFSKEMQERPTTKFSGGW 417 (807)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHcCchHHHHHHHHHHHHHHHhc----cccchhHHHHHHhhcCCChhHhcCCccccCCce
Confidence 000011111110000 000 11222222211000 0000 011233566778888888765577888999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEE
Q 035832 166 KRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFL 238 (245)
Q Consensus 166 kqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~ 238 (245)
|.||+|||||..+|-+|+|||||+.||......+-++|..++ +|++|||||-.++...|..|+.|++.++.
T Consensus 418 RMRvSLARALflEPTLLMLDEPTNHLDLNAVIWLdNYLQgWk--KTLLIVSHDQgFLD~VCtdIIHLD~qkLh 488 (807)
T KOG0066|consen 418 RMRVSLARALFLEPTLLMLDEPTNHLDLNAVIWLDNYLQGWK--KTLLIVSHDQGFLDSVCTDIIHLDNQKLH 488 (807)
T ss_pred eeehhHHHHHhcCceeeeecCCccccccceeeehhhHHhhhh--heeEEEecccchHHHHHHHHhhhhhhhhh
Confidence 999999999999999999999999999999999888888875 69999999999999999999999876653
|
|
| >cd03242 ABC_RecF RecF is a recombinational DNA repair ATPase that maintains replication in the presence of DNA damage | Back alignment and domain information |
|---|
Probab=99.85 E-value=1.3e-20 Score=163.69 Aligned_cols=78 Identities=31% Similarity=0.419 Sum_probs=67.6
Q ss_pred CCCCCChHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhc-
Q 035832 157 DPHSLSGGYKRRLALAIQLV---------QVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALV- 226 (245)
Q Consensus 157 ~~~~LSgGqkqrv~iAral~---------~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~- 226 (245)
....+|+||+|+++||++|+ .+|+++|+||||++||+..++.+++.+.++. .+++++|+.+.+..+|
T Consensus 180 ~~~~lS~Gq~~~~~la~~la~~~~~~~~~~~~~illlDEp~a~LD~~~~~~l~~~l~~~~---q~ii~~~~~~~~~~~~~ 256 (270)
T cd03242 180 AADFGSQGQQRTLALALKLAEIQLIKEVSGEYPVLLLDDVLAELDLGRQAALLDAIEGRV---QTFVTTTDLADFDALWL 256 (270)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCcEEEEcCcchhcCHHHHHHHHHHhhcCC---CEEEEeCCchhccchhc
Confidence 35568999999999999985 7999999999999999999999999998764 4677777777777887
Q ss_pred --cEEEEEeCCeE
Q 035832 227 --DHSWRMDMGGF 237 (245)
Q Consensus 227 --d~v~~l~~G~i 237 (245)
++++.+++|++
T Consensus 257 ~~~~i~~l~~g~i 269 (270)
T cd03242 257 RRAQIFRVDAGTL 269 (270)
T ss_pred cCccEEEEeCcEE
Confidence 78999999985
|
When replication is prematurely disrupted by DNA damage, several recF pathway gene products play critical roles processing the arrested replication fork, allowing it to resume and complete its task. This CD represents the nucleotide binding domain of RecF. RecF belongs to a large superfamily of ABC transporters involved in the transport of a wide variety of different compounds including sugars, ions, peptides, and more complex organic molecules. The nucleotide binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases with a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins. |
| >PRK00349 uvrA excinuclease ABC subunit A; Reviewed | Back alignment and domain information |
|---|
Probab=99.85 E-value=6.9e-21 Score=188.11 Aligned_cols=99 Identities=31% Similarity=0.430 Sum_probs=89.8
Q ss_pred HHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecC
Q 035832 142 RAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVP--DLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHD 218 (245)
Q Consensus 142 ~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p--~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd 218 (245)
++++.+||....+++++.+|||||+|||+||+||+.+| +++||||||+|||+..++.++++|+++++ +.|||+|+|+
T Consensus 471 ~~L~~vGL~~l~l~r~~~~LSgGE~QRv~LA~aL~~~~~~~llILDEPtagLd~~~~~~L~~~L~~L~~~G~TVIvVeH~ 550 (943)
T PRK00349 471 KFLVDVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNDRLIETLKHLRDLGNTLIVVEHD 550 (943)
T ss_pred HHhhccccCCCCCCCchhhCCHHHHHHHHHHHHHhhCCCCcEEEecCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCC
Confidence 36788899754369999999999999999999999997 99999999999999999999999999975 6899999999
Q ss_pred hhHHHhhccEEEEE------eCCeEEEec
Q 035832 219 LKEMAALVDHSWRM------DMGGFLVEQ 241 (245)
Q Consensus 219 ~~~~~~~~d~v~~l------~~G~i~~~~ 241 (245)
++++. .||+|++| ++|+++.++
T Consensus 551 ~~~i~-~aD~vi~LgpgaG~~~G~iv~~g 578 (943)
T PRK00349 551 EDTIR-AADYIVDIGPGAGVHGGEVVASG 578 (943)
T ss_pred HHHHH-hCCEEEEeccccCCCCCEEeecc
Confidence 99986 69999999 889998754
|
|
| >cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.85 E-value=2.6e-21 Score=161.45 Aligned_cols=140 Identities=20% Similarity=0.260 Sum_probs=102.2
Q ss_pred cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEE-EEecCCCCCC
Q 035832 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVG-IVFQFPERYF 110 (245)
Q Consensus 32 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~-~v~Q~~~~~~ 110 (245)
..+.+|++|++++|++++|+||||+||||++++++++.- ..++| ++|-. .
T Consensus 16 ~~v~~~~~~~~~~~~~~~l~G~n~~GKstll~~i~~~~~-------------------------la~~G~~vpa~----~ 66 (204)
T cd03282 16 NFIPNDIYLTRGSSRFHIITGPNMSGKSTYLKQIALLAI-------------------------MAQIGCFVPAE----Y 66 (204)
T ss_pred cEEEeeeEEeeCCCcEEEEECCCCCCHHHHHHHHHHHHH-------------------------HHHcCCCcchh----h
Confidence 468999999999999999999999999999999998741 01122 22221 2
Q ss_pred CcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 035832 111 VADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAG 190 (245)
Q Consensus 111 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~ 190 (245)
...++.+++... ++..+. ..+..+++|+|++|+ ..+.+++.+|+++|+|||++|
T Consensus 67 ~~l~~~d~I~~~------------------------~~~~d~-~~~~~S~fs~e~~~~-~~il~~~~~~~lvllDE~~~g 120 (204)
T cd03282 67 ATLPIFNRLLSR------------------------LSNDDS-MERNLSTFASEMSET-AYILDYADGDSLVLIDELGRG 120 (204)
T ss_pred cCccChhheeEe------------------------cCCccc-cchhhhHHHHHHHHH-HHHHHhcCCCcEEEeccccCC
Confidence 233445554321 233222 456677899999975 555668899999999999999
Q ss_pred CCHHHHHHH-HHHHHHhhc-CceEEEEecChhHHHhhc
Q 035832 191 LDWKARADV-VKLLKHLKK-ELTILVVSHDLKEMAALV 226 (245)
Q Consensus 191 LD~~~~~~i-~~~l~~l~~-~~tiii~tHd~~~~~~~~ 226 (245)
+|+.....+ ..+++.+.+ +.++|++||+.+.+...+
T Consensus 121 t~~~~~~~l~~~il~~l~~~~~~~i~~TH~~~l~~~~~ 158 (204)
T cd03282 121 TSSADGFAISLAILECLIKKESTVFFATHFRDIAAILG 158 (204)
T ss_pred CCHHHHHHHHHHHHHHHHhcCCEEEEECChHHHHHHhh
Confidence 999776655 445666654 689999999999887655
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.85 E-value=5.7e-20 Score=174.43 Aligned_cols=102 Identities=27% Similarity=0.416 Sum_probs=89.4
Q ss_pred HHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEE
Q 035832 140 LQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVP---DLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVV 215 (245)
Q Consensus 140 ~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p---~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~ 215 (245)
..+.|-.+||....+.++..+|||||.|||-||.-|.... .++||||||.||-..-.+++++.|.++.. +.|||+|
T Consensus 802 kLqtL~dVGLgYi~LGQpatTLSGGEaQRvKLA~EL~k~~tg~TlYiLDEPTTGLH~~Di~kLl~VL~rLvd~GnTViVI 881 (935)
T COG0178 802 KLQTLVDVGLGYIKLGQPATTLSGGEAQRVKLAKELSKRSTGKTLYILDEPTTGLHFDDIKKLLEVLHRLVDKGNTVIVI 881 (935)
T ss_pred HHHHHHHcCcceEecCCccccccchHHHHHHHHHHHhhccCCCeEEEeCCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEE
Confidence 3456777899877789999999999999999999998887 99999999999999999999999999974 6899999
Q ss_pred ecChhHHHhhccEEEEEe------CCeEEEecc
Q 035832 216 SHDLKEMAALVDHSWRMD------MGGFLVEQR 242 (245)
Q Consensus 216 tHd~~~~~~~~d~v~~l~------~G~i~~~~~ 242 (245)
.|+++.+ ..||+|+-|- .|+|++++.
T Consensus 882 EHNLdVI-k~AD~IIDLGPeGG~~GG~iva~GT 913 (935)
T COG0178 882 EHNLDVI-KTADWIIDLGPEGGDGGGEIVASGT 913 (935)
T ss_pred ecccceE-eecCEEEEcCCCCCCCCceEEEecC
Confidence 9999976 5799999983 466776654
|
|
| >TIGR00630 uvra excinuclease ABC, A subunit | Back alignment and domain information |
|---|
Probab=99.84 E-value=1.2e-20 Score=186.19 Aligned_cols=98 Identities=31% Similarity=0.411 Sum_probs=88.5
Q ss_pred HHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecCh
Q 035832 143 AINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVP--DLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDL 219 (245)
Q Consensus 143 ~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p--~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~ 219 (245)
.+..+||....+++++.+|||||+|||.||+||+.+| +++||||||+|||+..++.++++|+++.+ +.|||+|+||+
T Consensus 470 ~L~~vgL~~l~l~r~~~tLSGGE~QRv~LA~aL~~~~~~~llILDEPtagLD~~~~~~L~~~L~~L~~~G~TVIvVeHd~ 549 (924)
T TIGR00630 470 FLIDVGLDYLTLSRAAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLINTLKRLRDLGNTVIVVEHDE 549 (924)
T ss_pred hHhhccccccccCCCcCcCCHHHHHHHHHHHHHhhCCCCcEEEEcCCccCCCHHHHHHHHHHHHHHHhCCCEEEEEECCH
Confidence 4677888754368999999999999999999999986 89999999999999999999999999965 68999999999
Q ss_pred hHHHhhccEEEEE------eCCeEEEec
Q 035832 220 KEMAALVDHSWRM------DMGGFLVEQ 241 (245)
Q Consensus 220 ~~~~~~~d~v~~l------~~G~i~~~~ 241 (245)
+++. .||++++| ++|+++.++
T Consensus 550 ~~i~-~aD~vi~LgpgaG~~~G~Iv~~g 576 (924)
T TIGR00630 550 ETIR-AADYVIDIGPGAGIHGGEVVASG 576 (924)
T ss_pred HHHh-hCCEEEEecccccCCCCEEeecc
Confidence 9886 89999999 889988754
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.83 E-value=6.2e-20 Score=163.76 Aligned_cols=181 Identities=25% Similarity=0.321 Sum_probs=140.4
Q ss_pred EECCCCccceeeeeeEEEcCCC-----EEEEECCCCCcHHHHHHHHhCCCCCCcc-eEEEcCccCCCCCCCCCCCCCCCc
Q 035832 25 YRPPGTQVDILNGVSFSLPEKS-----FGLIFGRSGSGKTTLLQLLAGLSKPTSG-SINIRGYNNDGEPNNSPEPLPPEK 98 (245)
Q Consensus 25 ~~y~~~~~~il~~vsl~i~~Ge-----~~~liG~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~~~~~ 98 (245)
++|++- +..+.++.|.|..|+ ++..+|.||.|||||+++++|.++|++| +|- .-.
T Consensus 343 y~Yp~m-~k~~g~F~L~i~~GefsdSeiivmlgEngtgkTTfi~mlag~~~pd~~~e~p------------------~ln 403 (592)
T KOG0063|consen 343 YSYPKM-KKTVGDFCLCIKVGEFSDSEIIVMLGENGTGKTTFIRMLAGRLKPDEGGEIP------------------VLN 403 (592)
T ss_pred eccCcc-eeeeeeEEEEEeecccCCceeEEEEccCCcchhHHHHHHhcCCCCCccCccc------------------ccc
Confidence 567653 457889999999885 6889999999999999999999999866 221 124
Q ss_pred EEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhC
Q 035832 99 VGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQV 178 (245)
Q Consensus 99 i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~ 178 (245)
|+|=||....- ...||++-+.--... ......-+.+.++-+.+++. .++.+.+|||||+|||++|.+|-..
T Consensus 404 VSykpqkispK-~~~tvR~ll~~kIr~-------ay~~pqF~~dvmkpL~ie~i-~dqevq~lSggelQRval~KOGGKp 474 (592)
T KOG0063|consen 404 VSYKPQKISPK-REGTVRQLLHTKIRD-------AYMHPQFVNDVMKPLQIENI-IDQEVQGLSGGELQRVALALCLGKP 474 (592)
T ss_pred eeccccccCcc-ccchHHHHHHHHhHh-------hhcCHHHHHhhhhhhhHHHH-HhHHhhcCCchhhHHHHHHHhcCCC
Confidence 77888875432 345776655321100 00011234556677777775 6999999999999999999999999
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHh--hcCceEEEEecChhHHHhhccEEEEEe
Q 035832 179 PDLLILDEPLAGLDWKARADVVKLLKHL--KKELTILVVSHDLKEMAALVDHSWRMD 233 (245)
Q Consensus 179 p~llllDEPts~LD~~~~~~i~~~l~~l--~~~~tiii~tHd~~~~~~~~d~v~~l~ 233 (245)
+++++.|||.+-||.+.+..--..+++. +.++|-.+|.||.-.+--++|||++.+
T Consensus 475 AdvYliDEpsAylDSeQRi~AskvikRfilhakktafvVEhdfImaTYladrvivf~ 531 (592)
T KOG0063|consen 475 ADVYLIDEPSAYLDSEQRIIASKVIKRFILHAKKTAFVVEHDFIMATYLADRVIVFE 531 (592)
T ss_pred CceEEecCchhhcChHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHhhcceeEEEe
Confidence 9999999999999999999888888885 456899999999887777899999987
|
|
| >cd03284 ABC_MutS1 MutS1 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.79 E-value=7.9e-19 Score=147.80 Aligned_cols=146 Identities=22% Similarity=0.188 Sum_probs=95.2
Q ss_pred ceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-CcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCC
Q 035832 33 DILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP-TSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFV 111 (245)
Q Consensus 33 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~ 111 (245)
.+.+|++|+.++ ++++|+||||||||||+|+++++.-. ..|.. + + .....++++.|- +.
T Consensus 19 ~v~n~~~l~~~~-~~~~l~Gpn~sGKstllr~i~~~~~l~~~g~~------v---p------~~~~~i~~~~~i----~~ 78 (216)
T cd03284 19 FVPNDTELDPER-QILLITGPNMAGKSTYLRQVALIALLAQIGSF------V---P------ASKAEIGVVDRI----FT 78 (216)
T ss_pred eEeeeEEecCCc-eEEEEECCCCCChHHHHHHHHHHHHHhccCCe------e---c------cccceecceeeE----ec
Confidence 478999999887 99999999999999999999875422 11211 1 0 012456666542 34
Q ss_pred cccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH--hhCCCEEEEeCC--
Q 035832 112 ADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL--VQVPDLLILDEP-- 187 (245)
Q Consensus 112 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral--~~~p~llllDEP-- 187 (245)
.+++.+++..+. |.=...++.+++++ +.+|+++|||||
T Consensus 79 ~~~~~~~ls~g~--------------------------------------s~f~~e~~~l~~~l~~~~~~~llllDEp~~ 120 (216)
T cd03284 79 RIGASDDLAGGR--------------------------------------STFMVEMVETANILNNATERSLVLLDEIGR 120 (216)
T ss_pred cCCchhhhccCc--------------------------------------chHHHHHHHHHHHHHhCCCCeEEEEecCCC
Confidence 455555554431 11122222233333 579999999999
Q ss_pred -CCCCCHHHHHHHHHHHHHhh-c-CceEEEEecChhHHHhhccEEEEEeCCeEEE
Q 035832 188 -LAGLDWKARADVVKLLKHLK-K-ELTILVVSHDLKEMAALVDHSWRMDMGGFLV 239 (245)
Q Consensus 188 -ts~LD~~~~~~i~~~l~~l~-~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~ 239 (245)
|+++|.... ...+++.+. . +.++|++||+.+ +..++|++..+.++++..
T Consensus 121 gt~~lD~~~~--~~~il~~l~~~~~~~vi~~TH~~~-l~~l~~~~~~v~~~~~~~ 172 (216)
T cd03284 121 GTSTYDGLSI--AWAIVEYLHEKIGAKTLFATHYHE-LTELEGKLPRVKNFHVAV 172 (216)
T ss_pred CCChHHHHHH--HHHHHHHHHhccCCcEEEEeCcHH-HHHHhhcCCCeEEEEEEE
Confidence 888888653 233444443 3 579999999975 566888877777777654
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam |
| >cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.76 E-value=6.5e-18 Score=141.96 Aligned_cols=135 Identities=22% Similarity=0.252 Sum_probs=91.9
Q ss_pred eeeeeeEEEcCC--CEEEEECCCCCcHHHHHHHHh--CCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCC
Q 035832 34 ILNGVSFSLPEK--SFGLIFGRSGSGKTTLLQLLA--GLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERY 109 (245)
Q Consensus 34 il~~vsl~i~~G--e~~~liG~nGsGKSTLl~~l~--Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~ 109 (245)
+=+|+++ .++ .+++|+||||+|||||||.++ +++ +..|.+.+.. ..+++|..|.....
T Consensus 18 vpnd~~l--~~~~~~~~~itGpNg~GKStlLk~i~~~~~l-a~~G~~v~a~---------------~~~~~~~d~i~~~l 79 (213)
T cd03281 18 VPNDTEI--GGGGPSIMVITGPNSSGKSVYLKQVALIVFL-AHIGSFVPAD---------------SATIGLVDKIFTRM 79 (213)
T ss_pred EcceEEe--cCCCceEEEEECCCCCChHHHHHHHHHHHHH-HhCCCeeEcC---------------CcEEeeeeeeeeee
Confidence 3455555 444 789999999999999999998 434 5667665521 23577777654211
Q ss_pred CCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 035832 110 FVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLA 189 (245)
Q Consensus 110 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts 189 (245)
-...++.+ +++. + .-+-||+++|++++.+|+++|+|||++
T Consensus 80 ~~~~si~~------------------------------~~S~---------f-~~el~~l~~~l~~~~~~slvllDE~~~ 119 (213)
T cd03281 80 SSRESVSS------------------------------GQSA---------F-MIDLYQVSKALRLATRRSLVLIDEFGK 119 (213)
T ss_pred CCccChhh------------------------------ccch---------H-HHHHHHHHHHHHhCCCCcEEEeccccC
Confidence 00111110 0011 1 345699999999999999999999999
Q ss_pred CCCHHHHHHH-HHHHHHhhc---C-ceEEEEecChhHHHhhc
Q 035832 190 GLDWKARADV-VKLLKHLKK---E-LTILVVSHDLKEMAALV 226 (245)
Q Consensus 190 ~LD~~~~~~i-~~~l~~l~~---~-~tiii~tHd~~~~~~~~ 226 (245)
|+|+.....+ ..+++.+.+ + .++|++||+.+.+....
T Consensus 120 gtd~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~~~~~ 161 (213)
T cd03281 120 GTDTEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELFNRSL 161 (213)
T ss_pred CCCHHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHHHhhh
Confidence 9999764444 567777753 2 48999999999877653
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >TIGR02858 spore_III_AA stage III sporulation protein AA | Back alignment and domain information |
|---|
Probab=99.76 E-value=3e-18 Score=148.47 Aligned_cols=135 Identities=22% Similarity=0.225 Sum_probs=92.3
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCC
Q 035832 46 SFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPR 125 (245)
Q Consensus 46 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~ 125 (245)
.-++|+||||||||||+++|+|+++|++|+|.++|+++..... .......++++||+. .....+|.+|..
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~~~~G~i~~~g~~v~~~d~---~~ei~~~~~~~~q~~--~~~r~~v~~~~~----- 181 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILSTGISQLGLRGKKVGIVDE---RSEIAGCVNGVPQHD--VGIRTDVLDGCP----- 181 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccCCCCceEEECCEEeecchh---HHHHHHHhccccccc--ccccccccccch-----
Confidence 5689999999999999999999999999999999998743210 011234566777764 222223322210
Q ss_pred CCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 035832 126 QSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKH 205 (245)
Q Consensus 126 ~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~ 205 (245)
. ..| ..+.+.+++|+++|+|||++ .+.+..+++.
T Consensus 182 ---------------------------------k--~~~-----~~~~i~~~~P~villDE~~~------~e~~~~l~~~ 215 (270)
T TIGR02858 182 ---------------------------------K--AEG-----MMMLIRSMSPDVIVVDEIGR------EEDVEALLEA 215 (270)
T ss_pred ---------------------------------H--HHH-----HHHHHHhCCCCEEEEeCCCc------HHHHHHHHHH
Confidence 0 001 13333347999999999974 3445556666
Q ss_pred hhcCceEEEEecChhH--H-----------HhhccEEEEEeCCe
Q 035832 206 LKKELTILVVSHDLKE--M-----------AALVDHSWRMDMGG 236 (245)
Q Consensus 206 l~~~~tiii~tHd~~~--~-----------~~~~d~v~~l~~G~ 236 (245)
+..+.++|++||+.+. + ..+++|+++|++|+
T Consensus 216 ~~~G~~vI~ttH~~~~~~~~~r~~~~~l~~~~~~~r~i~L~~~~ 259 (270)
T TIGR02858 216 LHAGVSIIATAHGRDVEDLYKRPVFKELIENEAFERYVVLSRRK 259 (270)
T ss_pred HhCCCEEEEEechhHHHHHHhChHHHHHHhcCceEEEEEEecCC
Confidence 6667999999997654 4 26689999998764
|
Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation. |
| >smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family | Back alignment and domain information |
|---|
Probab=99.76 E-value=8.7e-19 Score=144.11 Aligned_cols=73 Identities=18% Similarity=0.185 Sum_probs=56.2
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHhhc--CceEEEEecChhHHHhhccE
Q 035832 154 LDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVV-KLLKHLKK--ELTILVVSHDLKEMAALVDH 228 (245)
Q Consensus 154 ~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~-~~l~~l~~--~~tiii~tHd~~~~~~~~d~ 228 (245)
.++..+++|+|++|...+++. +.+|+++|+|||++|+|+.....+. .+++.+.+ +.++|++||+.+ +..+|++
T Consensus 55 ~~~~~s~fs~~~~~l~~~l~~-~~~~~llllDEp~~g~d~~~~~~~~~~~l~~l~~~~~~~iii~TH~~~-l~~~~~~ 130 (185)
T smart00534 55 LAQGLSTFMVEMKETANILKN-ATENSLVLLDELGRGTSTYDGVAIAAAVLEYLLEKIGALTLFATHYHE-LTKLADE 130 (185)
T ss_pred hhccccHHHHHHHHHHHHHHh-CCCCeEEEEecCCCCCCHHHHHHHHHHHHHHHHhcCCCeEEEEecHHH-HHHHhhc
Confidence 466788899998874444432 4599999999999999999877764 55666653 589999999996 5677875
|
|
| >PF02463 SMC_N: RecF/RecN/SMC N terminal domain; InterPro: IPR003395 This domain is found at the N terminus of structural maintenance of chromosomes (SMC) proteins, which function together with other proteins in a range of chromosomal transactions, including chromosome condensation, sister-chromatid cohesion, recombination, DNA repair and epigenetic silencing of gene expression [] | Back alignment and domain information |
|---|
Probab=99.75 E-value=2.7e-18 Score=144.43 Aligned_cols=184 Identities=25% Similarity=0.292 Sum_probs=101.5
Q ss_pred eeeeEEEcCCCEEEEECCCCCcHHHHHHHHh-CCC--CCCcceEEEcCccCCCCCC--CCCCCCCCCcEEEEecCCCCCC
Q 035832 36 NGVSFSLPEKSFGLIFGRSGSGKTTLLQLLA-GLS--KPTSGSINIRGYNNDGEPN--NSPEPLPPEKVGIVFQFPERYF 110 (245)
Q Consensus 36 ~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~-Gl~--~p~~G~i~~~g~~~~~~~~--~~~~~~~~~~i~~v~Q~~~~~~ 110 (245)
+...+.+.+ .+++|+|||||||||++.+|. .|- +..+... . .....-. ..........|...+++.....
T Consensus 16 ~~~~~~~~~-~~~~i~G~NGsGKS~ileAi~~~l~~~~~~~~r~--~--~~~~lI~~~~~~~~~~~a~V~~~~~~~~~~~ 90 (220)
T PF02463_consen 16 KNAELSFSP-GLNVIVGPNGSGKSNILEAIEFVLGGRPSKSFRG--S--KLKDLINKSGSDQDSKSAEVELIFDNSDEEF 90 (220)
T ss_dssp CEEEEETTS-SEEEEEESTTSSHHHHHHHHHHHTTSS-TTTTT---S--SGGTCB--BTTB---SEEEEEEEEECTTEES
T ss_pred CeEEEecCC-CCEEEEcCCCCCHHHHHHHHHHHHHHcccccccc--c--ccccccccccccccccccccccccccccccc
Confidence 567777764 599999999999999999993 222 1111110 0 0000000 0000111234666666553210
Q ss_pred ----CcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH----hhCCCEE
Q 035832 111 ----VADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL----VQVPDLL 182 (245)
Q Consensus 111 ----~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral----~~~p~ll 182 (245)
....+...+... ................+.+.+..+.+.. ..||||||.+++||.-| ..+++++
T Consensus 91 ~~~~~~~~i~r~~~~~-~~~~~~in~~~~~~~~~~~~l~~~~i~~-------~~lSgGEk~~~~Lal~lA~~~~~~~p~~ 162 (220)
T PF02463_consen 91 ELDKKEIEISRRIDRK-GRSEYKINGKKVRLKDLEELLPEVGISP-------EFLSGGEKSLVALALLLALQRYKPSPFL 162 (220)
T ss_dssp SSSSSEEEEEEEEETT-S-EEEEETTEEE-HHHHHHHHHCTTTTT-------TGS-HHHHHHHHHHHHHHHHTCS--SEE
T ss_pred cccccccccccccccc-cccccccccccccccccccccccccccc-------cccccccccccccccccccccccccccc
Confidence 000110000000 0000000000011133455565555542 28999999999999765 4577999
Q ss_pred EEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEe
Q 035832 183 ILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMD 233 (245)
Q Consensus 183 llDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~ 233 (245)
|||||.++||...+..+.++|+++.++.-+|++||+... ...+|+.+.+.
T Consensus 163 ilDEvd~~LD~~~~~~l~~~l~~~~~~~Q~ii~Th~~~~-~~~a~~~~~v~ 212 (220)
T PF02463_consen 163 ILDEVDAALDEQNRKRLADLLKELSKQSQFIITTHNPEM-FEDADKLIGVT 212 (220)
T ss_dssp EEESTTTTS-HHHHHHHHHHHHHHTTTSEEEEE-S-HHH-HTT-SEEEEEE
T ss_pred ccccccccccccccccccccccccccccccccccccccc-ccccccccccc
Confidence 999999999999999999999999877889999999775 56788877653
|
The domain is also found in RecF and RecN proteins, which are involved in DNA metabolism and recombination.; PDB: 3HTK_A 1W1W_C 2WD5_A 3L51_A 1XEW_Y 3KTA_B 3NWC_B 1XEX_A 1GXL_C 1GXK_A .... |
| >TIGR01069 mutS2 MutS2 family protein | Back alignment and domain information |
|---|
Probab=99.73 E-value=4.9e-18 Score=165.77 Aligned_cols=131 Identities=21% Similarity=0.234 Sum_probs=93.9
Q ss_pred eeeEEEcCC-CEEEEECCCCCcHHHHHHHHhCC-CCCCcce-EEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcc
Q 035832 37 GVSFSLPEK-SFGLIFGRSGSGKTTLLQLLAGL-SKPTSGS-INIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVAD 113 (245)
Q Consensus 37 ~vsl~i~~G-e~~~liG~nGsGKSTLl~~l~Gl-~~p~~G~-i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ 113 (245)
.+|+++..+ ++++|+||||+|||||||+|+|. +.+..|. |... ....++|..|..
T Consensus 313 p~di~l~~~~~~liItGpNg~GKSTlLK~i~~~~l~aq~G~~Vpa~---------------~~~~~~~~d~i~------- 370 (771)
T TIGR01069 313 PFTLNLKFEKRVLAITGPNTGGKTVTLKTLGLLALMFQSGIPIPAN---------------EHSEIPYFEEIF------- 370 (771)
T ss_pred eceeEeCCCceEEEEECCCCCCchHHHHHHHHHHHHHHhCCCccCC---------------ccccccchhhee-------
Confidence 378889887 99999999999999999999998 4454441 1110 001122222211
Q ss_pred cHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 035832 114 NVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDW 193 (245)
Q Consensus 114 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~ 193 (245)
.. ++.... .....+++|+||++++.|++++ .+|+++|+|||++|+||
T Consensus 371 -------~~------------------------i~~~~s-i~~~LStfS~~m~~~~~il~~~-~~~sLvLlDE~g~GtD~ 417 (771)
T TIGR01069 371 -------AD------------------------IGDEQS-IEQNLSTFSGHMKNISAILSKT-TENSLVLFDELGAGTDP 417 (771)
T ss_pred -------ee------------------------cChHhH-HhhhhhHHHHHHHHHHHHHHhc-CCCcEEEecCCCCCCCH
Confidence 00 000011 2334678999999999998887 89999999999999999
Q ss_pred HHHHHH-HHHHHHhhc-CceEEEEecChhHH
Q 035832 194 KARADV-VKLLKHLKK-ELTILVVSHDLKEM 222 (245)
Q Consensus 194 ~~~~~i-~~~l~~l~~-~~tiii~tHd~~~~ 222 (245)
.....+ ..++..+.+ +.++|++||+.+..
T Consensus 418 ~eg~ala~aiLe~l~~~g~~viitTH~~eL~ 448 (771)
T TIGR01069 418 DEGSALAISILEYLLKQNAQVLITTHYKELK 448 (771)
T ss_pred HHHHHHHHHHHHHHHhcCCEEEEECChHHHH
Confidence 999999 567777764 68999999998763
|
Function of MutS2 is unknown. It should not be considered a DNA mismatch repair protein. It is likely a DNA mismatch binding protein of unknown cellular function. |
| >cd00820 PEPCK_HprK Phosphoenolpyruvate carboxykinase (PEPCK), a critical gluconeogenic enzyme, catalyzes the first committed step in the diversion of tricarboxylic acid cycle intermediates toward gluconeogenesis | Back alignment and domain information |
|---|
Probab=99.64 E-value=3.2e-16 Score=117.04 Aligned_cols=77 Identities=23% Similarity=0.151 Sum_probs=62.9
Q ss_pred cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCC
Q 035832 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFV 111 (245)
Q Consensus 32 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~ 111 (245)
..+|++++|++++|++++|+||||||||||++++. +|++.++|.++...... ...+.+++++|+ ++
T Consensus 2 ~~aL~~vsl~i~~ge~v~I~GpSGsGKSTLl~~l~------~G~i~~~g~di~~~~~~----~~~~~~~~~~q~----lf 67 (107)
T cd00820 2 TTSLHGVLVDVYGKVGVLITGDSGIGKTELALELI------KRKHRLVGDDNVEIRED----SKDELIGRNPEL----GL 67 (107)
T ss_pred ceEEEeeEEEEcCCEEEEEEcCCCCCHHHHHHHhh------CCeEEEeeEeHHHhhhh----hcCCEEEEechh----cc
Confidence 36899999999999999999999999999999986 79999999987554322 234557777776 34
Q ss_pred cccHHHHHHhc
Q 035832 112 ADNVLDEVIFG 122 (245)
Q Consensus 112 ~~tv~e~l~~~ 122 (245)
..|+++||.+.
T Consensus 68 ~~ti~~Ni~~~ 78 (107)
T cd00820 68 EIRLRLNIFLI 78 (107)
T ss_pred hhhHHhhceee
Confidence 67999999874
|
It catalyzes the reversible decarboxylation and phosphorylation of oxaloacetate to yield phosphoenolpyruvate and carbon dioxide, using a nucleotide molecule (ATP or GTP) for the phosphoryl transfer, and has a strict requirement for divalent metal ions for activity. PEPCK's separate into two phylogenetic groups based on their nucleotide substrate specificity (the ATP-, and GTP-dependent groups).HprK/P, the bifunctional histidine-containing protein kinase/phosphatase, controls the phosphorylation state of the phosphocarrier protein HPr and regulates the utilization of carbon sources by gram-positive bacteria. It catalyzes both the ATP-dependent phosphorylation of HPr and its dephosphorylation by phosphorolysis. PEPCK and the C-terminal catalytic domain of HprK/P are structural |
| >TIGR00634 recN DNA repair protein RecN | Back alignment and domain information |
|---|
Probab=99.64 E-value=8.9e-16 Score=146.06 Aligned_cols=77 Identities=27% Similarity=0.373 Sum_probs=70.9
Q ss_pred CCCChHHHHHHHHHHHHhhC----CCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeC
Q 035832 159 HSLSGGYKRRLALAIQLVQV----PDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDM 234 (245)
Q Consensus 159 ~~LSgGqkqrv~iAral~~~----p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~ 234 (245)
..|||||+||++||++++.. |+++||||||+|||+.++..+.+.|+++.++.+||+|||++..+ .+||++++|++
T Consensus 439 ~~lSgGe~~rv~la~~l~~~~~~~~~~lilDEp~~gld~~~~~~~~~~l~~l~~~~~vi~iTH~~~~~-~~ad~~~~l~k 517 (563)
T TIGR00634 439 KVASGGELSRVMLALKVVLSSSAAVTTLIFDEVDVGVSGETAQAIAKKLAQLSERHQVLCVTHLPQVA-AHADAHFKVEK 517 (563)
T ss_pred hhcCHhHHHHHHHHHHHhhCCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEEChHHHH-HhcCeEEEEEE
Confidence 36899999999999999986 69999999999999999999999999998779999999999877 58999999987
Q ss_pred Ce
Q 035832 235 GG 236 (245)
Q Consensus 235 G~ 236 (245)
|.
T Consensus 518 ~~ 519 (563)
T TIGR00634 518 EG 519 (563)
T ss_pred cc
Confidence 53
|
All proteins in this family for which functions are known are ATP binding proteins involved in the initiation of recombination and recombinational repair. |
| >cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.63 E-value=2e-15 Score=127.46 Aligned_cols=137 Identities=17% Similarity=0.116 Sum_probs=89.7
Q ss_pred cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhC-CCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCC
Q 035832 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAG-LSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYF 110 (245)
Q Consensus 32 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~ 110 (245)
..+.+|++|.+++|++++|+||||+||||+++++++ .+.++.|...+.. ..+++|..|- +
T Consensus 18 ~~v~n~i~~~~~~g~~~~itG~N~~GKStll~~i~~~~~la~~G~~v~a~---------------~~~~~~~~~i----~ 78 (222)
T cd03287 18 SFVPNDIHLSAEGGYCQIITGPNMGGKSSYIRQVALITIMAQIGSFVPAS---------------SATLSIFDSV----L 78 (222)
T ss_pred CEEEEeEEEEecCCcEEEEECCCCCCHHHHHHHHHHHHHHHhCCCEEEcC---------------ceEEeccceE----E
Confidence 357899999999999999999999999999999999 6778888876531 1123332221 1
Q ss_pred CcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 035832 111 VADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAG 190 (245)
Q Consensus 111 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~ 190 (245)
..+...|++.-+ -++++ .|-+++.-+...+.+|+++|+|||++|
T Consensus 79 ~~~~~~d~~~~~-----------------------------------~StF~-~e~~~~~~il~~~~~~sLvllDE~~~g 122 (222)
T cd03287 79 TRMGASDSIQHG-----------------------------------MSTFM-VELSETSHILSNCTSRSLVILDELGRG 122 (222)
T ss_pred EEecCccccccc-----------------------------------cchHH-HHHHHHHHHHHhCCCCeEEEEccCCCC
Confidence 111111111110 00111 122223222334568999999999999
Q ss_pred CCHHHHHHH-HHHHHHhhc--CceEEEEecChhHHH
Q 035832 191 LDWKARADV-VKLLKHLKK--ELTILVVSHDLKEMA 223 (245)
Q Consensus 191 LD~~~~~~i-~~~l~~l~~--~~tiii~tHd~~~~~ 223 (245)
.|+.....+ +.+++.+.+ +.++|++||+.+...
T Consensus 123 T~~~d~~~i~~~il~~l~~~~~~~~i~~TH~~~l~~ 158 (222)
T cd03287 123 TSTHDGIAIAYATLHYLLEEKKCLVLFVTHYPSLGE 158 (222)
T ss_pred CChhhHHHHHHHHHHHHHhccCCeEEEEcccHHHHH
Confidence 987766664 566666653 579999999998754
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PRK00409 recombination and DNA strand exchange inhibitor protein; Reviewed | Back alignment and domain information |
|---|
Probab=99.63 E-value=2.8e-16 Score=153.87 Aligned_cols=84 Identities=18% Similarity=0.193 Sum_probs=68.5
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHhhc-CceEEEEecChhHHHhhccEEEE
Q 035832 154 LDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVK-LLKHLKK-ELTILVVSHDLKEMAALVDHSWR 231 (245)
Q Consensus 154 ~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~-~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~ 231 (245)
..+..+++|+||+|++.|++++ .+|+++|+|||++|+||.....+.. ++..+.+ +.++|++||+.+.....+++..+
T Consensus 384 i~~~lStfS~~m~~~~~Il~~~-~~~sLvLlDE~~~GtDp~eg~ala~aile~l~~~~~~vIitTH~~el~~~~~~~~~v 462 (782)
T PRK00409 384 IEQSLSTFSGHMTNIVRILEKA-DKNSLVLFDELGAGTDPDEGAALAISILEYLRKRGAKIIATTHYKELKALMYNREGV 462 (782)
T ss_pred hhhchhHHHHHHHHHHHHHHhC-CcCcEEEecCCCCCCCHHHHHHHHHHHHHHHHHCCCEEEEECChHHHHHHHhcCCCe
Confidence 3566789999999999999998 8999999999999999999988865 5666654 68999999999887766666555
Q ss_pred EeCCeEEE
Q 035832 232 MDMGGFLV 239 (245)
Q Consensus 232 l~~G~i~~ 239 (245)
+ ++.+..
T Consensus 463 ~-~~~~~~ 469 (782)
T PRK00409 463 E-NASVEF 469 (782)
T ss_pred E-EEEEEE
Confidence 4 345544
|
|
| >TIGR00618 sbcc exonuclease SbcC | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.5e-15 Score=153.59 Aligned_cols=82 Identities=21% Similarity=0.233 Sum_probs=76.6
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHH
Q 035832 154 LDKDPHSLSGGYKRRLALAIQLVQ----------VPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEM 222 (245)
Q Consensus 154 ~~~~~~~LSgGqkqrv~iAral~~----------~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~ 222 (245)
.++++.+|||||++||+||+||+. +|++||+||||++||+.+...+++.|..+.. +.+|+||||++++.
T Consensus 944 ~~r~~~~lSgGe~~~~~la~al~ls~~~~~~~~~~~~~l~lDEp~~~LD~~~~~~~~~~l~~l~~~g~~i~iisH~~~~~ 1023 (1042)
T TIGR00618 944 SVRPSATLSGGETFLASLSLALALADLLSTSGGTVLDSLFIDEGFGSLDEDSLDRAIGILDAIREGSKMIGIISHVPEFR 1023 (1042)
T ss_pred CcCCcccCCHHHHHHHHHHHHHHHHHHHhhccCCCCCeEEecCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCcHHHH
Confidence 477899999999999999999986 7999999999999999999999999999864 68999999999999
Q ss_pred HhhccEEEEEeCC
Q 035832 223 AALVDHSWRMDMG 235 (245)
Q Consensus 223 ~~~~d~v~~l~~G 235 (245)
..+||+|.+++.+
T Consensus 1024 ~~~~~~i~v~~~~ 1036 (1042)
T TIGR00618 1024 ERIPHRILVKKTN 1036 (1042)
T ss_pred HhhCCEEEEEECC
Confidence 9999999999754
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >KOG0063 consensus RNAse L inhibitor, ABC superfamily [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.62 E-value=4.4e-16 Score=139.34 Aligned_cols=173 Identities=30% Similarity=0.378 Sum_probs=120.9
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEE----ecCCCCCCCcccHHHH
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIV----FQFPERYFVADNVLDE 118 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v----~Q~~~~~~~~~tv~e~ 118 (245)
.+|++.+++|.||-||||-+++++|-++|.-|.... +. .|..-++|- .|+ +| .--+.+|
T Consensus 98 rpg~vlglvgtngigkstAlkilagk~kpnlg~~~~--------pp-----~w~~il~~frgselq~---yf-tk~le~~ 160 (592)
T KOG0063|consen 98 RPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRYDN--------PP-----DWQEILTYFRGSELQN---YF-TKILEDN 160 (592)
T ss_pred CcchhccccccCcccHHHHHHHHhCCCCCCCCCCCC--------Cc-----chHHHhhhhhhHHHhh---hh-hhhcccc
Confidence 489999999999999999999999999997664311 00 011112211 011 00 0011112
Q ss_pred HHhcC--------CCCC----CchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeC
Q 035832 119 VIFGW--------PRQS----GSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDE 186 (245)
Q Consensus 119 l~~~~--------~~~~----~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDE 186 (245)
+.... ++.. +........+....++++.+.|... +++.+.+|||||-||.+||.+.+.+.++.++||
T Consensus 161 lk~~~kpQyvd~ipr~~k~~v~~~l~~~~~r~~~~~~~~~~~L~~~-~~re~~~lsggelqrfaia~~~vq~advyMFDE 239 (592)
T KOG0063|consen 161 LKAIIKPQYVDQIPRAVKGTVGSLLDRKDERDNKEEVCDQLDLNNL-LDREVEQLSGGELQRFAIAMVCVQKADVYMFDE 239 (592)
T ss_pred ccCcCChHHHHHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHhhH-HHhhhhhcccchhhhhhhhhhhhhhcceeEecC
Confidence 11100 0000 0000111122345667777888875 699999999999999999999999999999999
Q ss_pred CCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEe
Q 035832 187 PLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMD 233 (245)
Q Consensus 187 Pts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~ 233 (245)
|.+.||...+..-...|+.+.. ..=||+|.||+..+..+.|-+..+.
T Consensus 240 pSsYLDVKQRLkaA~~IRsl~~p~~YiIVVEHDLsVLDylSDFiCcLY 287 (592)
T KOG0063|consen 240 PSSYLDVKQRLKAAITIRSLINPDRYIIVVEHDLSVLDYLSDFICCLY 287 (592)
T ss_pred CcccchHHHhhhHHHHHHHhhCCCCeEEEEEeechHHHhhhcceeEEe
Confidence 9999999999999999999865 5789999999998887888888875
|
|
| >PTZ00132 GTP-binding nuclear protein Ran; Provisional | Back alignment and domain information |
|---|
Probab=99.62 E-value=3.6e-16 Score=131.09 Aligned_cols=44 Identities=27% Similarity=0.210 Sum_probs=42.2
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCC-----CCCCHHHHHHHHHHHHHhh
Q 035832 164 GYKRRLALAIQLVQVPDLLILDEPL-----AGLDWKARADVVKLLKHLK 207 (245)
Q Consensus 164 Gqkqrv~iAral~~~p~llllDEPt-----s~LD~~~~~~i~~~l~~l~ 207 (245)
-|++++.|||+++.+|+++++|||| ++||+..++.+.+++++++
T Consensus 156 v~~~f~~ia~~l~~~p~~~~ldEp~~~~~~~~ld~~~~~~~~~~~~~~~ 204 (215)
T PTZ00132 156 FEKPFLWLARRLTNDPNLVFVGAPALAPEEIQIDPELVAQAEKELQAAA 204 (215)
T ss_pred HHHHHHHHHHHHhhcccceecCCcccCCCccccCHHHHHHHHHHHHHHh
Confidence 3999999999999999999999999 9999999999999999985
|
|
| >PRK07721 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.62 E-value=1.1e-14 Score=133.78 Aligned_cols=177 Identities=20% Similarity=0.224 Sum_probs=114.0
Q ss_pred cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCC---C-CCCCCCCCCcEEEEecCCC
Q 035832 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEP---N-NSPEPLPPEKVGIVFQFPE 107 (245)
Q Consensus 32 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~---~-~~~~~~~~~~i~~v~Q~~~ 107 (245)
..+++++ |.+.+|++++|+|+||+|||||+++|+|+.+|+.|.|.+.|+.-.... . ......+++.+.++.+-..
T Consensus 146 ~~vid~l-~~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~gvI~~~Gerg~ev~e~~~~~l~~~~l~r~v~vv~~~~~ 224 (438)
T PRK07721 146 VRAIDSL-LTVGKGQRVGIFAGSGVGKSTLMGMIARNTSADLNVIALIGERGREVREFIERDLGPEGLKRSIVVVATSDQ 224 (438)
T ss_pred hhhhhee-eeecCCcEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEEecCCccHHHHHHhhcChhhhcCeEEEEECCCC
Confidence 4589999 999999999999999999999999999999999999999665432111 0 0111224567888876432
Q ss_pred CCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCCh-HHHHHHHHHHHHhhCCCEEEEeC
Q 035832 108 RYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSG-GYKRRLALAIQLVQVPDLLILDE 186 (245)
Q Consensus 108 ~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg-Gqkqrv~iAral~~~p~llllDE 186 (245)
.. .+-+.- ......+.+.+..-|.+=.. -..+|+- -|.+| .|+ +.+.|
T Consensus 225 ~~------~~r~~~------------~~~a~~iAEyfr~~g~~Vll---~~Dsltr~A~A~r-Eis---------l~~ge 273 (438)
T PRK07721 225 PA------LMRIKG------------AYTATAIAEYFRDQGLNVML---MMDSVTRVAMAQR-EIG---------LAVGE 273 (438)
T ss_pred CH------HHHHHH------------HHHHHHHHHHHHHCCCcEEE---EEeChHHHHHHHH-HHH---------HhcCC
Confidence 11 111100 01111222233222322110 1122221 11111 011 12345
Q ss_pred C--CCCCCHHHHHHHHHHHHHhh---cCc-----eEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 187 P--LAGLDWKARADVVKLLKHLK---KEL-----TILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 187 P--ts~LD~~~~~~i~~~l~~l~---~~~-----tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
| |+|+||.....+.++++++. ++. ||++.+||+++ .+||++..|.+|+++.+..
T Consensus 274 ~P~~~G~dp~~~~~l~~ller~~~~~~GsIT~~~TVlv~~hdm~e--~i~d~v~~i~dG~Ivls~~ 337 (438)
T PRK07721 274 PPTTKGYTPSVFAILPKLLERTGTNASGSITAFYTVLVDGDDMNE--PIADTVRGILDGHFVLDRQ 337 (438)
T ss_pred CCccccCCHHHHHHHHHHHHHhcCCCCCCeeeEEEEEEECCCCCc--hhhhhEEEecCEEEEEecc
Confidence 4 78999999999999999986 243 99999999985 7999999999999998754
|
|
| >PHA02562 46 endonuclease subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=1.8e-15 Score=143.85 Aligned_cols=80 Identities=31% Similarity=0.466 Sum_probs=71.1
Q ss_pred CCCCCCChHHHHHHHHHHHHh----------hCCCEEEEeCCC-CCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHh
Q 035832 156 KDPHSLSGGYKRRLALAIQLV----------QVPDLLILDEPL-AGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAA 224 (245)
Q Consensus 156 ~~~~~LSgGqkqrv~iAral~----------~~p~llllDEPt-s~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~ 224 (245)
.++.+|||||+||++||+||+ .+|+++|||||| ++||+.++..+.+.|.++ ++.+||+|||+.+.. .
T Consensus 464 ~~~~~lS~Ge~~r~~la~~l~~~~~~~~~~~~~~~~lilDEp~~~~ld~~~~~~~~~~l~~~-~~~~iiiish~~~~~-~ 541 (562)
T PHA02562 464 FSYASFSQGEKARIDLALLFTWRDVASKVSGVDTNLLILDEVFDGALDAEGTKALLSILDSL-KDTNVFVISHKDHDP-Q 541 (562)
T ss_pred cChhhcChhHHHHHHHHHHHHHHHHHHHhcCCCcCeEEEecccCcccchhHHHHHHHHHHhC-CCCeEEEEECchhch-h
Confidence 356899999999999999988 599999999998 789999999999999998 678999999997654 6
Q ss_pred hccEEEEEeC-CeE
Q 035832 225 LVDHSWRMDM-GGF 237 (245)
Q Consensus 225 ~~d~v~~l~~-G~i 237 (245)
.||++++|.+ |+.
T Consensus 542 ~~d~~~~l~~~~~~ 555 (562)
T PHA02562 542 KFDRHLKMEKVGRF 555 (562)
T ss_pred hhhcEEEEEEECCe
Confidence 7899999986 544
|
|
| >PRK10869 recombination and repair protein; Provisional | Back alignment and domain information |
|---|
Probab=99.60 E-value=4.5e-15 Score=140.62 Aligned_cols=75 Identities=29% Similarity=0.334 Sum_probs=69.6
Q ss_pred CCChHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCC
Q 035832 160 SLSGGYKRRLALAIQLVQ----VPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMG 235 (245)
Q Consensus 160 ~LSgGqkqrv~iAral~~----~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G 235 (245)
.|||||+||++||++++. +|+++|+|||++|||+.+...+.+.|+++.++.+||+|||++..+ .+||+++.+.++
T Consensus 430 ~lSgGe~~Ri~LA~~~~~~~~~~~~~li~DEpd~gld~~~~~~v~~~l~~l~~~~qvi~iTH~~~~~-~~ad~~~~v~k~ 508 (553)
T PRK10869 430 VASGGELSRIALAIQVITARKMETPALIFDEVDVGISGPTAAVVGKLLRQLGESTQVMCVTHLPQVA-GCGHQHFFVSKE 508 (553)
T ss_pred hCCHHHHHHHHHHHHHHhccCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCHHHH-HhCCEEEEEecc
Confidence 479999999999999997 689999999999999999999999999997778999999999865 799999999874
|
|
| >cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase | Back alignment and domain information |
|---|
Probab=99.57 E-value=2.2e-14 Score=123.08 Aligned_cols=76 Identities=26% Similarity=0.247 Sum_probs=62.1
Q ss_pred CCCCChHH--------HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH-HHHHHHHhh-cCceEEEEecChhHHHhhcc
Q 035832 158 PHSLSGGY--------KRRLALAIQLVQVPDLLILDEPLAGLDWKARAD-VVKLLKHLK-KELTILVVSHDLKEMAALVD 227 (245)
Q Consensus 158 ~~~LSgGq--------kqrv~iAral~~~p~llllDEPts~LD~~~~~~-i~~~l~~l~-~~~tiii~tHd~~~~~~~~d 227 (245)
...+|||+ +||+++||++..+++|.+| ||+.+|..+... ++ +.++. ...|.|++||++... ...|
T Consensus 127 G~~~sgG~~~~~~~~~~q~~~~Ar~~~~~gsIt~l--~T~~~d~~~~~~~~i--~~~~~~~~~~~ivls~~la~~-~~~p 201 (249)
T cd01128 127 GKILSGGVDANALHKPKRFFGAARNIEEGGSLTII--ATALVDTGSRMDDVI--FEEFKGTGNMELVLDRRLAER-RIFP 201 (249)
T ss_pred CCCCCCCcChhhhhhhHHHHHHhcCCCCCCceEEe--eeheecCCCcccchH--HHHHhcCCCcEEEEchHHhhC-CCCC
Confidence 34479999 9999999999999999999 999999644433 44 45554 357999999999875 5779
Q ss_pred EEEEEeCCeEE
Q 035832 228 HSWRMDMGGFL 238 (245)
Q Consensus 228 ~v~~l~~G~i~ 238 (245)
.|.+|+.|.+.
T Consensus 202 aI~vl~s~sr~ 212 (249)
T cd01128 202 AIDILKSGTRK 212 (249)
T ss_pred eEEEcCCCCcc
Confidence 99999999875
|
It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain. |
| >PRK13695 putative NTPase; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=3.3e-15 Score=121.46 Aligned_cols=80 Identities=16% Similarity=0.122 Sum_probs=63.2
Q ss_pred CCCCCCCChHHHHHHHHHHHHhhCCCEEEEeC--CCCCCCHHHHHHHHHHHHHhh-cCceEEEEecChhHHHhhccEEEE
Q 035832 155 DKDPHSLSGGYKRRLALAIQLVQVPDLLILDE--PLAGLDWKARADVVKLLKHLK-KELTILVVSHDLKEMAALVDHSWR 231 (245)
Q Consensus 155 ~~~~~~LSgGqkqrv~iAral~~~p~llllDE--Pts~LD~~~~~~i~~~l~~l~-~~~tiii~tHd~~~~~~~~d~v~~ 231 (245)
.++...+|++++-++.+++..+.+|+++++|| |+.++|+.. .+.+.++. .+.++|+++|+. .+..++|++..
T Consensus 73 ~~~~~~lsgle~~~~~l~~~~l~~~~~lllDE~~~~e~~~~~~----~~~l~~~~~~~~~~i~v~h~~-~~~~~~~~i~~ 147 (174)
T PRK13695 73 GKYVVNLEDLERIGIPALERALEEADVIIIDEIGKMELKSPKF----VKAVEEVLDSEKPVIATLHRR-SVHPFVQEIKS 147 (174)
T ss_pred eeEEEehHHHHHHHHHHHHhccCCCCEEEEECCCcchhhhHHH----HHHHHHHHhCCCeEEEEECch-hhHHHHHHHhc
Confidence 44566799999999999999999999999999 555555444 44444443 468999999995 45678999999
Q ss_pred EeCCeEEE
Q 035832 232 MDMGGFLV 239 (245)
Q Consensus 232 l~~G~i~~ 239 (245)
+.+|+++.
T Consensus 148 ~~~~~i~~ 155 (174)
T PRK13695 148 RPGGRVYE 155 (174)
T ss_pred cCCcEEEE
Confidence 99998865
|
|
| >PRK08533 flagellar accessory protein FlaH; Reviewed | Back alignment and domain information |
|---|
Probab=99.53 E-value=8.8e-14 Score=118.22 Aligned_cols=158 Identities=21% Similarity=0.284 Sum_probs=94.9
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHH-HHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTL-LQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTL-l~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
+.++++.+.+++ -+++|++++|.|||||||||| +++++++.++...
T Consensus 8 ~~~~~ld~~l~g-----------gi~~g~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~---------------------- 54 (230)
T PRK08533 8 LSRDELHKRLGG-----------GIPAGSLILIEGDESTGKSILSQRLAYGFLQNGYS---------------------- 54 (230)
T ss_pred EEEeeeehhhCC-----------CCCCCcEEEEECCCCCCHHHHHHHHHHHHHhCCCc----------------------
Confidence 556666666643 268999999999999999999 6999988654222
Q ss_pred CcEEEEecCCCCCCCcccHHHHH-HhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEV-IFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
+.|+..+.. .....++. .+++. +++....=.+. . .+-.+ .+|+++.++..+++.+
T Consensus 55 --~~yi~~e~~----~~~~~~~~~~~g~~---------------~~~~~~~~~l~-~-~~~~~-~~~~~~~~~~~l~~il 110 (230)
T PRK08533 55 --VSYVSTQLT----TTEFIKQMMSLGYD---------------INKKLISGKLL-Y-IPVYP-LLSGNSEKRKFLKKLM 110 (230)
T ss_pred --EEEEeCCCC----HHHHHHHHHHhCCc---------------hHHHhhcCcEE-E-EEecc-cccChHHHHHHHHHHH
Confidence 233332110 11112222 12210 00011100110 1 12222 3677766666665554
Q ss_pred hh----CCCEEEEeCCCCCC----CHHHHHHHHHHHHHhhc-CceEEEEecChhH--------HHhhccEEEEEe
Q 035832 176 VQ----VPDLLILDEPLAGL----DWKARADVVKLLKHLKK-ELTILVVSHDLKE--------MAALVDHSWRMD 233 (245)
Q Consensus 176 ~~----~p~llllDEPts~L----D~~~~~~i~~~l~~l~~-~~tiii~tHd~~~--------~~~~~d~v~~l~ 233 (245)
-. +|+++++||||+++ |+..+++++++++.+++ +.|+ ++||+... +..+||-|+.|+
T Consensus 111 ~~~~~~~~~~lVIDe~t~~l~~~~d~~~~~~l~~~l~~l~~~g~tv-i~t~~~~~~~~~~~~~~~~~~DgvI~L~ 184 (230)
T PRK08533 111 NTRRFYEKDVIIIDSLSSLISNDASEVAVNDLMAFFKRISSLNKVI-ILTANPKELDESVLTILRTAATMLIRLE 184 (230)
T ss_pred HHHHhcCCCEEEEECccHHhcCCcchHHHHHHHHHHHHHHhCCCEE-EEEecccccccccceeEEEeeeEEEEEE
Confidence 43 69999999999999 88888999999998865 5655 44666443 244567777776
|
|
| >cd03286 ABC_MSH6_euk MutS6 homolog in eukaryotes | Back alignment and domain information |
|---|
Probab=99.53 E-value=2.8e-13 Score=114.15 Aligned_cols=140 Identities=19% Similarity=0.145 Sum_probs=89.4
Q ss_pred cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-cceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCC
Q 035832 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPT-SGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYF 110 (245)
Q Consensus 32 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~ 110 (245)
..+-+|++|+.++|++++|+||||+||||+++++++..-.. .|... +. ...+++++.+ .|
T Consensus 17 ~~v~ndi~l~~~~~~~~~itG~n~~gKs~~l~~i~~~~~la~~G~~v---------pa------~~~~i~~~~~----i~ 77 (218)
T cd03286 17 SFVPNDVDLGATSPRILVLTGPNMGGKSTLLRTVCLAVIMAQMGMDV---------PA------KSMRLSLVDR----IF 77 (218)
T ss_pred CeEEeeeEEeecCCcEEEEECCCCCchHHHHHHHHHHHHHHHcCCcc---------Cc------cccEeccccE----EE
Confidence 35789999999999999999999999999999998874321 12110 00 0112222111 11
Q ss_pred CcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 035832 111 VADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAG 190 (245)
Q Consensus 111 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~ 190 (245)
..+...|++..+. ++++ .|-+++.-....+.+|+++|+|||++|
T Consensus 78 ~~~~~~d~~~~~~-----------------------------------StF~-~e~~~~~~il~~~~~~sLvLlDE~~~G 121 (218)
T cd03286 78 TRIGARDDIMKGE-----------------------------------STFM-VELSETANILRHATPDSLVILDELGRG 121 (218)
T ss_pred EecCcccccccCc-----------------------------------chHH-HHHHHHHHHHHhCCCCeEEEEecccCC
Confidence 1111222222110 0111 122333333333567999999999999
Q ss_pred CCHHHHHHHHHH-HHHhhc--CceEEEEecChhHHHhhc
Q 035832 191 LDWKARADVVKL-LKHLKK--ELTILVVSHDLKEMAALV 226 (245)
Q Consensus 191 LD~~~~~~i~~~-l~~l~~--~~tiii~tHd~~~~~~~~ 226 (245)
+|+.....+... ++.+.+ +.++|++||+++.+..++
T Consensus 122 t~~~dg~~la~ail~~L~~~~~~~~i~~TH~~el~~~~~ 160 (218)
T cd03286 122 TSTHDGYAIAHAVLEYLVKKVKCLTLFSTHYHSLCDEFH 160 (218)
T ss_pred CCchHHHHHHHHHHHHHHHhcCCcEEEEeccHHHHHHhh
Confidence 999999888887 666654 689999999999887765
|
The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c |
| >PF13304 AAA_21: AAA domain; PDB: 3QKS_B 1US8_B 1F2U_B 1F2T_B 3QKT_A 1II8_B 3QKR_B 3QKU_A | Back alignment and domain information |
|---|
Probab=99.52 E-value=7.4e-14 Score=116.98 Aligned_cols=66 Identities=30% Similarity=0.440 Sum_probs=55.0
Q ss_pred CCCCCChHHHHHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHH
Q 035832 157 DPHSLSGGYKRRLALAIQLVQVP---DLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEM 222 (245)
Q Consensus 157 ~~~~LSgGqkqrv~iAral~~~p---~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~ 222 (245)
+...+|.|++|.+.|+.++...+ .++++|||-++|+|..++.++++|....+ +..||++||++..+
T Consensus 233 ~~~~~S~G~~~~l~l~~~l~~~~~~~~illiDEpE~~LHp~~q~~l~~~l~~~~~~~~QviitTHSp~il 302 (303)
T PF13304_consen 233 PLSSLSSGEKRLLSLLSLLLSAKKNGSILLIDEPENHLHPSWQRKLIELLKELSKKNIQVIITTHSPFIL 302 (303)
T ss_dssp GGS---HHHHHHHHHHHHHHTTTTT-SEEEEESSSTTSSHHHHHHHHHHHHHTGGGSSEEEEEES-GGG-
T ss_pred eeccCCHHHHHHHHHHHHHhCcCCCCeEEEecCCcCCCCHHHHHHHHHHHHhhCccCCEEEEeCccchhc
Confidence 35567999999999998888777 89999999999999999999999988876 68999999998653
|
|
| >PRK03918 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=4e-14 Score=141.13 Aligned_cols=78 Identities=33% Similarity=0.432 Sum_probs=69.4
Q ss_pred CCCCCCCChHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhcc
Q 035832 155 DKDPHSLSGGYKR------RLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVD 227 (245)
Q Consensus 155 ~~~~~~LSgGqkq------rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d 227 (245)
++++..|||||+| |++||++++.+|+++|+||||++||+..+..+.++|..+.. +.+||+||||.+. ..+||
T Consensus 783 ~~~~~~lS~G~~~~~~la~rlal~~~l~~~~~~lilDEp~~~lD~~~~~~l~~~l~~~~~~~~~iiiith~~~~-~~~~d 861 (880)
T PRK03918 783 ERPLTFLSGGERIALGLAFRLALSLYLAGNIPLLILDEPTPFLDEERRRKLVDIMERYLRKIPQVIIVSHDEEL-KDAAD 861 (880)
T ss_pred cCChhhCCHhHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCcccCHHHHHHHHHHHHHHHhcCCEEEEEECCHHH-HHhCC
Confidence 4678999999999 55666788899999999999999999999999999998764 4799999999875 57899
Q ss_pred EEEEEe
Q 035832 228 HSWRMD 233 (245)
Q Consensus 228 ~v~~l~ 233 (245)
++++|.
T Consensus 862 ~~~~l~ 867 (880)
T PRK03918 862 YVIRVS 867 (880)
T ss_pred eEEEEE
Confidence 999998
|
|
| >PRK01156 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.4e-13 Score=137.53 Aligned_cols=77 Identities=30% Similarity=0.439 Sum_probs=68.2
Q ss_pred CCCCCCChHHHHHHHH------HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHh-hc--C-ceEEEEecChhHHHhh
Q 035832 156 KDPHSLSGGYKRRLAL------AIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHL-KK--E-LTILVVSHDLKEMAAL 225 (245)
Q Consensus 156 ~~~~~LSgGqkqrv~i------Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l-~~--~-~tiii~tHd~~~~~~~ 225 (245)
.++..|||||++|++| |++++.+|++++|||||++||+..+..+.++|... .. + .+||++|||.+.+ ..
T Consensus 797 ~~~~~lS~G~~~~~~la~rlala~~l~~~~~~lilDEpt~~lD~~~~~~l~~~l~~~~~~~~~~~~ii~ish~~~~~-~~ 875 (895)
T PRK01156 797 EGIDSLSGGEKTAVAFALRVAVAQFLNNDKSLLIMDEPTAFLDEDRRTNLKDIIEYSLKDSSDIPQVIMISHHRELL-SV 875 (895)
T ss_pred CccccCCHhHHHHHHHHHHHHHHHHhccCCCeEEEeCCCCcCCHHHHHHHHHHHHHHHHhcCCCCeEEEEECchHHH-Hh
Confidence 4688999999999975 59999999999999999999999999999999864 33 2 4899999999976 68
Q ss_pred ccEEEEEe
Q 035832 226 VDHSWRMD 233 (245)
Q Consensus 226 ~d~v~~l~ 233 (245)
||+++.+.
T Consensus 876 ~d~ii~~~ 883 (895)
T PRK01156 876 ADVAYEVK 883 (895)
T ss_pred cCeEEEEE
Confidence 99999998
|
|
| >PRK10246 exonuclease subunit SbcC; Provisional | Back alignment and domain information |
|---|
Probab=99.51 E-value=7.7e-14 Score=141.03 Aligned_cols=80 Identities=28% Similarity=0.248 Sum_probs=74.5
Q ss_pred CCCCCCCChHHHHHHHHHHHHhh--------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhh
Q 035832 155 DKDPHSLSGGYKRRLALAIQLVQ--------VPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAAL 225 (245)
Q Consensus 155 ~~~~~~LSgGqkqrv~iAral~~--------~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~ 225 (245)
++++.+|||||+++++||+||+. +|++||+||||++||+.+...+++.|..+.. +.+|+||||..+...++
T Consensus 944 ~r~~~~LSgGe~~~~~la~al~~s~~~s~~~~~~~l~lDEp~~~lD~~~~~~~~~~l~~l~~~g~~v~iisH~~~l~~~i 1023 (1047)
T PRK10246 944 VRDTRTLSGGESFLVSLALALALSDLVSHKTRIDSLFLDEGFGTLDSETLDTALDALDALNASGKTIGVISHVEAMKERI 1023 (1047)
T ss_pred CCCcccCCHHHHHHHHHHHHHHhhhhhhcCCCCCEEEEeCCCCcCCHHHHHHHHHHHHHHHHCCCEEEEEecHHHHHHhc
Confidence 57899999999999999999996 8999999999999999999999999999974 68999999999998888
Q ss_pred ccEEEEEeC
Q 035832 226 VDHSWRMDM 234 (245)
Q Consensus 226 ~d~v~~l~~ 234 (245)
..++.|-..
T Consensus 1024 ~~qi~V~k~ 1032 (1047)
T PRK10246 1024 PVQIKVKKI 1032 (1047)
T ss_pred cceEEEEEC
Confidence 888888875
|
|
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
Probab=99.50 E-value=8.4e-14 Score=143.73 Aligned_cols=78 Identities=27% Similarity=0.369 Sum_probs=67.9
Q ss_pred CCCCCCChHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh------cCceEEEEecChhHHH
Q 035832 156 KDPHSLSGGYKR------RLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLK------KELTILVVSHDLKEMA 223 (245)
Q Consensus 156 ~~~~~LSgGqkq------rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~------~~~tiii~tHd~~~~~ 223 (245)
..++.||||||| |++||||++.+|++|+|||||++||+.+...+.+.|..+. .+.+||+||||++++.
T Consensus 1195 ~~~~~lS~Gq~~~~~~~~rlala~~~~~~~~il~lDEPt~~lD~~~~~~l~~~l~~~~~~~~~~~~~~viiitHd~~~~~ 1274 (1311)
T TIGR00606 1195 DMRGRCSAGQKVLASLIIRLALAETFCLNCGIIALDEPTTNLDRENIESLAHALVEIIKSRSQQRNFQLLVITHDEDFVE 1274 (1311)
T ss_pred CCCCCCchhhhhHhhHhHHHHHHHHHhcCCCEEEeeCCcccCCHHHHHHHHHHHHHHHHhhhhccCCeEEEEecCHHHHH
Confidence 355799999999 9999999999999999999999999999999999988762 2479999999999998
Q ss_pred hhc-----cEEEEEe
Q 035832 224 ALV-----DHSWRMD 233 (245)
Q Consensus 224 ~~~-----d~v~~l~ 233 (245)
.+| +++|-+.
T Consensus 1275 ~~~~~~~~~~~~~~~ 1289 (1311)
T TIGR00606 1275 LLGRSEYVEKFYRLK 1289 (1311)
T ss_pred HHhhccccceeeeee
Confidence 875 5555453
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs | Back alignment and domain information |
|---|
Probab=99.49 E-value=2.2e-13 Score=111.25 Aligned_cols=86 Identities=23% Similarity=0.211 Sum_probs=71.0
Q ss_pred cCCCCccCCCCCCCCChHHHH------HHHHHHHHhhCCCEEEEeCCCCCCC---HHHHHHHHHHHHHhhc-CceEEEEe
Q 035832 147 VGLDGTSLDKDPHSLSGGYKR------RLALAIQLVQVPDLLILDEPLAGLD---WKARADVVKLLKHLKK-ELTILVVS 216 (245)
Q Consensus 147 ~~l~~~~~~~~~~~LSgGqkq------rv~iAral~~~p~llllDEPts~LD---~~~~~~i~~~l~~l~~-~~tiii~t 216 (245)
.|.... .+..+..+|+|++| +...+.+...+|+++++|||++.+| ...+..+.+++..+++ +.|+|+++
T Consensus 59 ~g~l~~-~d~~~~~~s~~~~~~~~~~~~~i~~~~~~~~~~~lviD~~~~~~~~~~~~~~~~i~~l~~~l~~~g~tvi~v~ 137 (187)
T cd01124 59 EGLLAI-VDADPDEIGPAESSLRLELIQRLKDAIEEFKAKRVVIDSVSGLLLMEQSTARLEIRRLLFALKRFGVTTLLTS 137 (187)
T ss_pred cCCeEE-EecCccccchhhhhhhHHHHHHHHHHHHHhCCCEEEEeCcHHHhhcChHHHHHHHHHHHHHHHHCCCEEEEEe
Confidence 344333 57888999999998 5556666778999999999999999 8888888888888864 68999999
Q ss_pred cChhH---------HHhhccEEEEEe
Q 035832 217 HDLKE---------MAALVDHSWRMD 233 (245)
Q Consensus 217 Hd~~~---------~~~~~d~v~~l~ 233 (245)
|+... +..+||.++.|+
T Consensus 138 ~~~~~~~~~~~~~~~~~~aD~ii~l~ 163 (187)
T cd01124 138 EQSGLEGTGFGGGDVEYLVDGVIRLR 163 (187)
T ss_pred ccccCCCcccCcCceeEeeeEEEEEE
Confidence 98764 678899999987
|
A related protein is found in archaea. |
| >TIGR02168 SMC_prok_B chromosome segregation protein SMC, common bacterial type | Back alignment and domain information |
|---|
Probab=99.47 E-value=9.1e-14 Score=141.52 Aligned_cols=79 Identities=29% Similarity=0.371 Sum_probs=70.7
Q ss_pred CCCCCCCCChHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEE
Q 035832 154 LDKDPHSLSGGYKRRLALAIQLV----QVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHS 229 (245)
Q Consensus 154 ~~~~~~~LSgGqkqrv~iAral~----~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v 229 (245)
.+.++..|||||+||++||++++ .+|+++||||||++||+.++..+.++|..+.++.+||||||+++.+ .+||++
T Consensus 1083 ~~~~~~~lS~g~~~~~~l~~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~~~~~~~~~~~i~~sh~~~~~-~~~d~~ 1161 (1179)
T TIGR02168 1083 KNQNLSLLSGGEKALTALALLFAIFKVKPAPFCILDEVDAPLDDANVERFANLLKEFSKNTQFIVITHNKGTM-EVADQL 1161 (1179)
T ss_pred ccccccccCccHHHHHHHHHHHHHHccCCCCeEEecCccccccHHHHHHHHHHHHHhccCCEEEEEEcChhHH-HHhhhH
Confidence 35788999999999999999985 6779999999999999999999999999987668899999999875 679998
Q ss_pred EEEe
Q 035832 230 WRMD 233 (245)
Q Consensus 230 ~~l~ 233 (245)
+.+.
T Consensus 1162 ~~~~ 1165 (1179)
T TIGR02168 1162 YGVT 1165 (1179)
T ss_pred eeee
Confidence 7654
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. This family represents the SMC protein of most bacteria. The smc gene is often associated with scpB (TIGR00281) and scpA genes, where scp stands for segregation and condensation protein. SMC was shown (in Caulobacter crescentus) to be induced early in S phase but present and bound to DNA throughout the cell cycle. |
| >PRK06793 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.44 E-value=5.8e-13 Score=121.87 Aligned_cols=165 Identities=20% Similarity=0.147 Sum_probs=115.3
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.++-+.++..|..+ ..+++.+ |.+.+|+.++|+|+||+|||||+++|+|..+|+.|.|.+.|+.
T Consensus 130 ~~~r~~i~~~l~TG-iraID~l-l~I~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~gvI~~iGer-------------- 193 (432)
T PRK06793 130 AFEREEITDVFETG-IKSIDSM-LTIGIGQKIGIFAGSGVGKSTLLGMIAKNAKADINVISLVGER-------------- 193 (432)
T ss_pred chheechhhccCCC-CEEEecc-ceecCCcEEEEECCCCCChHHHHHHHhccCCCCeEEEEeCCCC--------------
Confidence 46777888777643 4588885 9999999999999999999999999999999988877654421
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
. .++.+.+..- +..-++.....=....+.|.|+|+|++.+.+.+
T Consensus 194 ---------g------~ev~e~~~~~---------------------l~~~gl~~tvvv~~tsd~s~~~r~ra~~~a~~i 237 (432)
T PRK06793 194 ---------G------REVKDFIRKE---------------------LGEEGMRKSVVVVATSDESHLMQLRAAKLATSI 237 (432)
T ss_pred ---------c------ccHHHHHHHH---------------------hhhcccceeEEEEECCCCCHHHHHHHHHHHHHH
Confidence 0 1222222110 000011110011245678999999999999988
Q ss_pred -------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-cCceEEEEecChhHHHhhccEEEEEeCCeEEE
Q 035832 177 -------QVPDLLILDEPLAGLDWKARADVVKLLKHLK-KELTILVVSHDLKEMAALVDHSWRMDMGGFLV 239 (245)
Q Consensus 177 -------~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~ 239 (245)
.++-++++|+||...|+. +++...+.+.. .+.+..+.||-. ++++|......|.|..
T Consensus 238 AEyfr~~G~~VLlilDslTr~a~A~--reisl~~~e~p~~G~~~~~~s~l~----~L~ERag~~~~GSiT~ 302 (432)
T PRK06793 238 AEYFRDQGNNVLLMMDSVTRFADAR--RSVDIAVKELPIGGKTLLMESYMK----KLLERSGKTQKGSITG 302 (432)
T ss_pred HHHHHHcCCcEEEEecchHHHHHHH--HHHHHHhcCCCCCCeeeeeeccch----hHHHHhccCCCcceEE
Confidence 899999999999999996 56666666664 357778888843 3444544456777754
|
|
| >COG3910 Predicted ATPase [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.41 E-value=8.7e-12 Score=101.11 Aligned_cols=82 Identities=20% Similarity=0.293 Sum_probs=67.5
Q ss_pred CCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEe
Q 035832 155 DKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMD 233 (245)
Q Consensus 155 ~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~ 233 (245)
.+..+..|-||-=.-.+.+.+ ...-++|||||-++|.|.-+.+++..|+++.+ +..+||+||.+-++.--..+++.++
T Consensus 124 ~~sLh~~SHGEsf~~i~~~rf-~~~GiYiLDEPEa~LSp~RQlella~l~~la~sGaQ~IiATHSPiLlAiP~A~I~~~~ 202 (233)
T COG3910 124 GRSLHHMSHGESFLAIFHNRF-NGQGIYILDEPEAALSPSRQLELLAILRDLADSGAQIIIATHSPILLAIPGAEIYEIS 202 (233)
T ss_pred CcchhhhccchHHHHHHHHHh-ccCceEEecCccccCCHHHHHHHHHHHHHHHhcCCeEEEEecChhheeCCCcEEEEEe
Confidence 445667899998776666665 45689999999999999999999999999975 5899999999876554457888888
Q ss_pred CCeE
Q 035832 234 MGGF 237 (245)
Q Consensus 234 ~G~i 237 (245)
.+.+
T Consensus 203 ~~g~ 206 (233)
T COG3910 203 ESGI 206 (233)
T ss_pred cCCc
Confidence 7764
|
|
| >TIGR02169 SMC_prok_A chromosome segregation protein SMC, primarily archaeal type | Back alignment and domain information |
|---|
Probab=99.39 E-value=8.9e-13 Score=134.49 Aligned_cols=79 Identities=24% Similarity=0.202 Sum_probs=70.7
Q ss_pred CCCCCCCChHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEE
Q 035832 155 DKDPHSLSGGYKRRLALAIQLVQ----VPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSW 230 (245)
Q Consensus 155 ~~~~~~LSgGqkqrv~iAral~~----~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~ 230 (245)
.+++..||||||++++||++|+. +|+++|||||+++||+..+..+.++|..+..+.++|++||+... ..+||+++
T Consensus 1069 ~~~~~~lSgge~~~~~la~~~~~~~~~~~~~~~lDE~~~~ld~~~~~~~~~~l~~~~~~~~~i~~t~~~~~-~~~~d~~~ 1147 (1164)
T TIGR02169 1069 VQRLEAMSGGEKSLTALSFIFAIQRYKPSPFYAFDEVDMFLDGVNVERVAKLIREKAGEAQFIVVSLRSPM-IEYADRAI 1147 (1164)
T ss_pred CCcchhcCcchHHHHHHHHHHHHHhcCCCCcEEecccccccCHHHHHHHHHHHHHhcCCCeEEEEECcHHH-HHhcceeE
Confidence 45678999999999999999985 78999999999999999999999999998766889999999875 47999998
Q ss_pred EEeC
Q 035832 231 RMDM 234 (245)
Q Consensus 231 ~l~~ 234 (245)
.+..
T Consensus 1148 ~~~~ 1151 (1164)
T TIGR02169 1148 GVTM 1151 (1164)
T ss_pred eEEE
Confidence 7754
|
SMC (structural maintenance of chromosomes) proteins bind DNA and act in organizing and segregating chromosomes for partition. SMC proteins are found in bacteria, archaea, and eukaryotes. It is found in a single copy and is homodimeric in prokaryotes, but six paralogs (excluded from this family) are found in eukarotes, where SMC proteins are heterodimeric. This family represents the SMC protein of archaea and a few bacteria (Aquifex, Synechocystis, etc); the SMC of other bacteria is described by TIGR02168. The N- and C-terminal domains of this protein are well conserved, but the central hinge region is skewed in composition and highly divergent. |
| >TIGR03238 dnd_assoc_3 dnd system-associated protein 3 | Back alignment and domain information |
|---|
Probab=99.39 E-value=7.6e-14 Score=127.94 Aligned_cols=68 Identities=24% Similarity=0.306 Sum_probs=55.0
Q ss_pred ceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcc-eEEEcCccCCCCCCCCCCCCCCCcEEEEecCCC
Q 035832 33 DILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSG-SINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPE 107 (245)
Q Consensus 33 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~ 107 (245)
.+|++|||++++||+++|+|||||||||||| +|+..|++| +|.++|+++...+.... ..+-+|||+..
T Consensus 20 ~vL~~Vsl~i~~GEiv~L~G~SGsGKSTLLr--~~l~~~~sGg~I~ldg~~~~~~~~~ai-----~~LR~VFQ~fn 88 (504)
T TIGR03238 20 RILVKFNKELPSSSLLFLCGSSGDGKSEILA--ENKRKFSEGYEFFLDATHSFSPNKNAM-----ETLDEIFDGFN 88 (504)
T ss_pred HHHhCCceeecCCCEEEEECCCCCCHHHHHh--cCCCCCCCCCEEEECCEECCCCCHHHH-----HHHHHHHHhhh
Confidence 5899999999999999999999999999999 788888888 79999999865332211 11228888753
|
cereus E33L, Hahella chejuensis KCTC 2396, Pseudoalteromonas haloplanktis TAC12, and Escherichia coli B7A. |
| >TIGR02788 VirB11 P-type DNA transfer ATPase VirB11 | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.6e-12 Score=115.16 Aligned_cols=135 Identities=17% Similarity=0.145 Sum_probs=90.5
Q ss_pred eeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHH
Q 035832 38 VSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLD 117 (245)
Q Consensus 38 vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e 117 (245)
+++.+..|+.++|+||+|||||||+++|++++++..|.+.+.. ...... ..+..+++..+...
T Consensus 137 l~~~v~~~~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied--~~El~~-----~~~~~~~l~~~~~~---------- 199 (308)
T TIGR02788 137 LRLAIASRKNIIISGGTGSGKTTFLKSLVDEIPKDERIITIED--TREIFL-----PHPNYVHLFYSKGG---------- 199 (308)
T ss_pred HHHHhhCCCEEEEECCCCCCHHHHHHHHHccCCccccEEEEcC--ccccCC-----CCCCEEEEEecCCC----------
Confidence 4577889999999999999999999999999999888888742 111100 00122222222100
Q ss_pred HHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 035832 118 EVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARA 197 (245)
Q Consensus 118 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~ 197 (245)
......| ..-.++.+|-++|+++++|||.+ .
T Consensus 200 --------------------------------------~~~~~~~----~~~~l~~~Lr~~pd~ii~gE~r~-------~ 230 (308)
T TIGR02788 200 --------------------------------------QGLAKVT----PKDLLQSCLRMRPDRIILGELRG-------D 230 (308)
T ss_pred --------------------------------------CCcCccC----HHHHHHHHhcCCCCeEEEeccCC-------H
Confidence 0000011 11245667888999999999996 3
Q ss_pred HHHHHHHHhhcC-ceEEEEecChhHHHhhccEEEEEeCCeEEE
Q 035832 198 DVVKLLKHLKKE-LTILVVSHDLKEMAALVDHSWRMDMGGFLV 239 (245)
Q Consensus 198 ~i~~~l~~l~~~-~tiii~tHd~~~~~~~~d~v~~l~~G~i~~ 239 (245)
+++++++.+..+ .+++.++|..+ +....+|+..|..|++..
T Consensus 231 e~~~~l~a~~~g~~~~i~T~Ha~~-~~~~~~Rl~~l~~~~~~~ 272 (308)
T TIGR02788 231 EAFDFIRAVNTGHPGSITTLHAGS-PEEAFEQLALMVKSSQAG 272 (308)
T ss_pred HHHHHHHHHhcCCCeEEEEEeCCC-HHHHHHHHHHHhhccccc
Confidence 566777777666 46799999988 455689988887766543
|
The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA. |
| >PRK13830 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=99.36 E-value=1.1e-11 Score=122.47 Aligned_cols=64 Identities=20% Similarity=0.266 Sum_probs=57.2
Q ss_pred hhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHhhc-CceEEEEecChhHHH---------hhccEEEEEeCCeEEE
Q 035832 176 VQVPDLLILDEPLAGL-DWKARADVVKLLKHLKK-ELTILVVSHDLKEMA---------ALVDHSWRMDMGGFLV 239 (245)
Q Consensus 176 ~~~p~llllDEPts~L-D~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~---------~~~d~v~~l~~G~i~~ 239 (245)
..+|+++++|||+.+| |+..++.+.+.++.+++ +.+++++||+++.+. ..|+++++|.+|++..
T Consensus 650 ~~~p~illlDE~~~~L~d~~~~~~i~~~lk~~RK~~~~vil~Tq~~~d~~~s~~a~~i~~~~~t~i~L~n~~a~~ 724 (818)
T PRK13830 650 TGAPSLIILDEAWLMLGHPVFRDKIREWLKVLRKANCAVVLATQSISDAERSGIIDVLKESCPTKICLPNGAARE 724 (818)
T ss_pred CCCCcEEEEECchhhcCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHhcCchHHHHHhcCCeEEECCCccccc
Confidence 5799999999999999 79999999999999864 689999999999876 5799999999988743
|
|
| >PRK00064 recF recombination protein F; Reviewed | Back alignment and domain information |
|---|
Probab=99.36 E-value=2.3e-12 Score=116.46 Aligned_cols=79 Identities=27% Similarity=0.415 Sum_probs=68.9
Q ss_pred CCCCCChHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhc-
Q 035832 157 DPHSLSGGYKRRLALAIQLV---------QVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALV- 226 (245)
Q Consensus 157 ~~~~LSgGqkqrv~iAral~---------~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~- 226 (245)
....+|.||+|+++||++|+ .+|+++|||||+++||+..++.+++.+.++ +..++++||+.+.+...+
T Consensus 270 ~~~~~S~Gq~~~~~lal~la~~~~~~~~~~~~~ilLlDd~~s~LD~~~~~~l~~~l~~~--~~qv~it~~~~~~~~~~~~ 347 (361)
T PRK00064 270 AADFGSTGQQKLLLLALKLAEAELLKEETGEAPILLLDDVASELDDGRRAALLERLKGL--GAQVFITTTDLEDLADLLE 347 (361)
T ss_pred HHHhCChHHHHHHHHHHHHHHHHHHHHhhCCCCEEEEccchhhhCHHHHHHHHHHHhcc--CCEEEEEcCChhhhhhhhc
Confidence 34689999999999999996 799999999999999999999999998764 357999999988776664
Q ss_pred -cEEEEEeCCeE
Q 035832 227 -DHSWRMDMGGF 237 (245)
Q Consensus 227 -d~v~~l~~G~i 237 (245)
++++.|++|++
T Consensus 348 ~~~i~~v~~G~i 359 (361)
T PRK00064 348 NAKIFHVEQGKI 359 (361)
T ss_pred cCcEEEEeCCEE
Confidence 57999999987
|
|
| >COG0178 UvrA Excinuclease ATPase subunit [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=99.35 E-value=1.4e-11 Score=117.98 Aligned_cols=99 Identities=31% Similarity=0.434 Sum_probs=85.8
Q ss_pred HHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecCh
Q 035832 143 AINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVP--DLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDL 219 (245)
Q Consensus 143 ~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p--~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~ 219 (245)
.|-.+||..+-++|...+|||||.||+.||..+-.+= =+++||||+.||-+.-.+++++.|++++. +-|+|+|.||.
T Consensus 464 fL~~VGL~YLtL~R~a~TLSGGEaQRIRLAtqiGS~LtGVlYVLDEPSIGLHqrDn~rLi~tL~~LRDlGNTviVVEHDe 543 (935)
T COG0178 464 FLVDVGLGYLTLSRSAGTLSGGEAQRIRLATQIGSGLTGVLYVLDEPSIGLHQRDNERLIETLKRLRDLGNTVIVVEHDE 543 (935)
T ss_pred HHHHcCcCcccccccCCCcChhHHHHHHHHHHhcccceeeEEEecCCccCCChhhHHHHHHHHHHHHhcCCeEEEEecCH
Confidence 4555799887789999999999999999999996654 58899999999999999999999999986 68999999998
Q ss_pred hHHHhhccEEEEE------eCCeEEEecc
Q 035832 220 KEMAALVDHSWRM------DMGGFLVEQR 242 (245)
Q Consensus 220 ~~~~~~~d~v~~l------~~G~i~~~~~ 242 (245)
+.+ ..||+++-| +.|+|++++.
T Consensus 544 dti-~~AD~iIDiGPgAG~~GGeIv~~Gt 571 (935)
T COG0178 544 DTI-RAADHIIDIGPGAGEHGGEIVAEGT 571 (935)
T ss_pred HHH-hhcCEEEeeCCCCCcCCCEEEEccC
Confidence 865 679999988 4567777654
|
|
| >cd01120 RecA-like_NTPases RecA-like NTPases | Back alignment and domain information |
|---|
Probab=99.31 E-value=5e-12 Score=99.91 Aligned_cols=64 Identities=19% Similarity=0.153 Sum_probs=49.0
Q ss_pred CCCChHHHHHHHHHHHHhhCCCEEEEeCCCC----------CCCHHHHHHHHHHHHHhhc-CceEEEEecChhHH
Q 035832 159 HSLSGGYKRRLALAIQLVQVPDLLILDEPLA----------GLDWKARADVVKLLKHLKK-ELTILVVSHDLKEM 222 (245)
Q Consensus 159 ~~LSgGqkqrv~iAral~~~p~llllDEPts----------~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~ 222 (245)
...+.++.++++.+++...+|+++++|||++ +.|....+.+.+++...++ +.|+|+++|.....
T Consensus 66 ~~~~~~~~~~~~~~~~~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~vv~~~~~~~~~ 140 (165)
T cd01120 66 DDPAAARLLSKAERLRERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARKGGVTVIFTLQVPSGD 140 (165)
T ss_pred CCCcHHHHHHHHHHHHhCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhcCCceEEEEEecCCcc
Confidence 3445666678889999999999999999994 4555656777777666654 58999999977543
|
This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion. |
| >PRK02224 chromosome segregation protein; Provisional | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.6e-12 Score=124.93 Aligned_cols=78 Identities=35% Similarity=0.471 Sum_probs=68.1
Q ss_pred CCCCCChHHHH------HHHHHHHHhhC-----C-CEEEEeCCCCCCCHHHHHHHHHHHHHhhc-C-ceEEEEecChhHH
Q 035832 157 DPHSLSGGYKR------RLALAIQLVQV-----P-DLLILDEPLAGLDWKARADVVKLLKHLKK-E-LTILVVSHDLKEM 222 (245)
Q Consensus 157 ~~~~LSgGqkq------rv~iAral~~~-----p-~llllDEPts~LD~~~~~~i~~~l~~l~~-~-~tiii~tHd~~~~ 222 (245)
.+..||||||+ |+++|++++.+ | +++|+||||++||+..+..+.++|..+.. + .+||+||||.+.+
T Consensus 778 ~~~~lS~G~~~~~~lalr~a~~~~~~~~~~~~~~~~~~ilDEp~~~lD~~~~~~~~~~l~~~~~~~~~qviiish~~~~~ 857 (880)
T PRK02224 778 EPEQLSGGERALFNLSLRCAIYRLLAEGIEGDAPLPPLILDEPTVFLDSGHVSQLVDLVESMRRLGVEQIVVVSHDDELV 857 (880)
T ss_pred ChhhcCccHHHHHHHHHHHHHHHHhhhcccCCCCCCceEecCCcccCCHHHHHHHHHHHHHHHhcCCCeEEEEECChHHH
Confidence 46799999999 89999999864 3 67999999999999999999999999864 4 4899999999887
Q ss_pred HhhccEEEEEeCC
Q 035832 223 AALVDHSWRMDMG 235 (245)
Q Consensus 223 ~~~~d~v~~l~~G 235 (245)
..||+++.|...
T Consensus 858 -~~ad~~~~~~~~ 869 (880)
T PRK02224 858 -GAADDLVRVEKD 869 (880)
T ss_pred -HhcCeeEEeecC
Confidence 479999999743
|
|
| >PRK06002 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.4e-11 Score=111.57 Aligned_cols=91 Identities=21% Similarity=0.131 Sum_probs=70.7
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcC---ccCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRG---YNNDGEPNNSP 91 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g---~~~~~~~~~~~ 91 (245)
.+.++.+++++.|..+ ..+++.++ .|.+||+++|+||||||||||+++|+++.+|+.|.|.+.| .++........
T Consensus 137 p~~~~r~~v~~~l~TG-i~aID~L~-~I~~Gqri~I~G~SGsGKTTLL~~Ia~l~~pd~gvv~liGergrev~e~~~~~l 214 (450)
T PRK06002 137 PPAMTRARVETGLRTG-VRVIDIFT-PLCAGQRIGIFAGSGVGKSTLLAMLARADAFDTVVIALVGERGREVREFLEDTL 214 (450)
T ss_pred CCCeEeecceEEcCCC-cEEeeeec-eecCCcEEEEECCCCCCHHHHHHHHhCCCCCCeeeeeecccCCccHHHHhHHHH
Confidence 3468999999999654 56899996 9999999999999999999999999999999999998864 44322111111
Q ss_pred CCCCCCcEEEEecCCC
Q 035832 92 EPLPPEKVGIVFQFPE 107 (245)
Q Consensus 92 ~~~~~~~i~~v~Q~~~ 107 (245)
...+++.|+|++|...
T Consensus 215 ~~~r~rtI~vV~qsd~ 230 (450)
T PRK06002 215 ADNLKKAVAVVATSDE 230 (450)
T ss_pred HHhhCCeEEEEEcCCC
Confidence 1234568999999753
|
|
| >PRK06067 flagellar accessory protein FlaH; Validated | Back alignment and domain information |
|---|
Probab=99.17 E-value=4e-10 Score=95.79 Aligned_cols=75 Identities=19% Similarity=0.181 Sum_probs=57.0
Q ss_pred CCCChHHHHHHHHHHHHhh--CCCEEEEeCCCCC---CCHHHHHHHHHHHHHhhc-CceEEEEecChhH-------HHhh
Q 035832 159 HSLSGGYKRRLALAIQLVQ--VPDLLILDEPLAG---LDWKARADVVKLLKHLKK-ELTILVVSHDLKE-------MAAL 225 (245)
Q Consensus 159 ~~LSgGqkqrv~iAral~~--~p~llllDEPts~---LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~-------~~~~ 225 (245)
...|.++++.+..++.++. +|+++++||||+. .|......+++.++.+++ +.|+++++|+... +..+
T Consensus 99 ~~~~~~~~~ll~~l~~~i~~~~~~~iviDs~t~~~~~~~~~~~~~~l~~l~~l~~~g~tvllt~~~~~~~~~~~~~~~~l 178 (234)
T PRK06067 99 EWNSTLANKLLELIIEFIKSKREDVIIIDSLTIFATYAEEDDILNFLTEAKNLVDLGKTILITLHPYAFSEELLSRIRSI 178 (234)
T ss_pred ccCcchHHHHHHHHHHHHHhcCCCEEEEecHHHHHhcCCHHHHHHHHHHHHHHHhCCCEEEEEecCCcCCHHHHHHHHhh
Confidence 3457789999999999987 9999999999964 455555566555666543 5899999997654 4567
Q ss_pred ccEEEEEe
Q 035832 226 VDHSWRMD 233 (245)
Q Consensus 226 ~d~v~~l~ 233 (245)
+|-++.|+
T Consensus 179 ~DgvI~L~ 186 (234)
T PRK06067 179 CDVYLKLR 186 (234)
T ss_pred eEEEEEEE
Confidence 78888776
|
|
| >TIGR00611 recf recF protein | Back alignment and domain information |
|---|
Probab=99.15 E-value=1e-10 Score=105.77 Aligned_cols=63 Identities=30% Similarity=0.411 Sum_probs=57.3
Q ss_pred CCCChHHHHHHHHHHHHhh---------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHH
Q 035832 159 HSLSGGYKRRLALAIQLVQ---------VPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMA 223 (245)
Q Consensus 159 ~~LSgGqkqrv~iAral~~---------~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~ 223 (245)
..+|.||+|+++||.+|+. +|++||||||+++||+..++.+++.|... +.+++++||+++.+.
T Consensus 274 ~~~S~Gq~r~l~lal~la~~~~l~~~~~~~pilLLDD~~seLD~~~r~~l~~~l~~~--~~qv~it~~~~~~~~ 345 (365)
T TIGR00611 274 DFASQGQLRSLALALRLAEGELLREEGGEYPILLLDDVASELDDQRRRLLAELLQSL--GVQVFVTAISLDHLK 345 (365)
T ss_pred HhcChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcCchhccCHHHHHHHHHHHhhc--CCEEEEEecChhhcc
Confidence 4689999999999999999 99999999999999999999999999764 568999999987654
|
All proteins in this family for which functions are known are DNA binding proteins that assist the filamentation of RecA onto DNA for the initiation of recombination or recombinational repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
| >cd01125 repA Hexameric Replicative Helicase RepA | Back alignment and domain information |
|---|
Probab=99.13 E-value=3.3e-10 Score=96.65 Aligned_cols=135 Identities=24% Similarity=0.276 Sum_probs=80.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCC
Q 035832 45 KSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWP 124 (245)
Q Consensus 45 Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~ 124 (245)
|.+..|+||.|+|||||.-.++=-. ..|.=++.+ . ... ....++-|+.-+..
T Consensus 1 g~~~ll~g~~G~GKS~lal~la~~v--a~G~~~~g~-~---~~~-----~~~~~Vlyi~~Ed~----------------- 52 (239)
T cd01125 1 GYVSALVAPGGTGKSSLLLVLALAM--ALGKNLFGG-G---LKV-----TEPGRVVYLSAEDP----------------- 52 (239)
T ss_pred CceeEEEcCCCCCHHHHHHHHHHHH--hcCccccCC-c---ccc-----CCCceEEEEECCCC-----------------
Confidence 6788999999999999997775321 233222211 0 000 00223444332210
Q ss_pred CCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHH----------------HHhhCCCEEEEeCCC
Q 035832 125 RQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAI----------------QLVQVPDLLILDEPL 188 (245)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAr----------------al~~~p~llllDEPt 188 (245)
......++..+...+++.+. .++... .+|+.|++.+++ +...+|+++++| |+
T Consensus 53 --------~~~i~~Rl~~i~~~~~~~~~-~~rl~~--~~g~~~~l~~~~~~~~~~~~~~~~l~~~~~~~~~~lvviD-pl 120 (239)
T cd01125 53 --------REEIHRRLEAILQHLEPDDA-GDRLFI--DSGRIQPISIAREGRIIVVPEFERIIEQLLIRRIDLVVID-PL 120 (239)
T ss_pred --------HHHHHHHHHHHHhhcCCcCc-ccceEE--eccCCCceecccCCcccccHHHHHHHHHHHhcCCCEEEEC-Ch
Confidence 11223344455555554332 122221 245666655544 446899999999 77
Q ss_pred CC------CCHHHHHHHHHHHHHhhc--CceEEEEecCh
Q 035832 189 AG------LDWKARADVVKLLKHLKK--ELTILVVSHDL 219 (245)
Q Consensus 189 s~------LD~~~~~~i~~~l~~l~~--~~tiii~tHd~ 219 (245)
++ +|+.....+++.|.++.+ +++||+++|..
T Consensus 121 ~~~~~~~~~d~~~~~~~~~~L~~~a~~~g~avl~v~H~~ 159 (239)
T cd01125 121 VSFHGVSENDNGAMDAVIKALRRIAAQTGAAILLVHHVR 159 (239)
T ss_pred HHhCCCCcCCHHHHHHHHHHHHHHHHHhCCEEEEEeccC
Confidence 64 799999999999998863 58999999976
|
RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent. |
| >cd01131 PilT Pilus retraction ATPase PilT | Back alignment and domain information |
|---|
Probab=99.12 E-value=3.4e-10 Score=94.05 Aligned_cols=57 Identities=19% Similarity=0.182 Sum_probs=41.8
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEe
Q 035832 170 ALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMD 233 (245)
Q Consensus 170 ~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~ 233 (245)
+++++|..+|+++++|||. |++....+ ++....+..++.++|..+.. ...+|++.+-
T Consensus 66 ~i~~aLr~~pd~ii~gEir---d~e~~~~~---l~~a~~G~~v~~t~Ha~~~~-~~~~Rl~~l~ 122 (198)
T cd01131 66 ALKAALRQDPDVILVGEMR---DLETIRLA---LTAAETGHLVMSTLHTNSAA-KTIDRIIDVF 122 (198)
T ss_pred HHHHHhcCCcCEEEEcCCC---CHHHHHHH---HHHHHcCCEEEEEecCCcHH-HHHhHHHhhc
Confidence 4889999999999999996 66654333 33334578899999998754 4567876653
|
PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility. |
| >PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated | Back alignment and domain information |
|---|
Probab=99.06 E-value=3.6e-10 Score=105.04 Aligned_cols=170 Identities=13% Similarity=0.073 Sum_probs=98.9
Q ss_pred eeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcc
Q 035832 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVAD 113 (245)
Q Consensus 34 il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ 113 (245)
++++.++.+++|.+++++||||+||||++..|++.+.+..|. .+|+++.+++. ..
T Consensus 245 ~~~~~~~~~~~g~Vi~LvGpnGvGKTTTiaKLA~~~~~~~G~---------------------~kV~LI~~Dt~----Ri 299 (484)
T PRK06995 245 VLDSEDALLDRGGVFALMGPTGVGKTTTTAKLAARCVMRHGA---------------------SKVALLTTDSY----RI 299 (484)
T ss_pred hccCccccccCCcEEEEECCCCccHHHHHHHHHHHHHHhcCC---------------------CeEEEEeCCcc----ch
Confidence 566777888899999999999999999999999876554441 25889998862 45
Q ss_pred cHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHH-HHHHHHHHhhCC-----CEEEEeCC
Q 035832 114 NVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKR-RLALAIQLVQVP-----DLLILDEP 187 (245)
Q Consensus 114 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkq-rv~iAral~~~p-----~llllDEP 187 (245)
++.|++.+.......... ......+......++.+. ....+.+...+++- .+.-+.+++.++ .+|+||.+
T Consensus 300 gA~EQLr~~AeilGVpv~---~~~~~~Dl~~aL~~L~d~-d~VLIDTaGr~~~d~~~~e~~~~l~~~~~p~e~~LVLdAt 375 (484)
T PRK06995 300 GGHEQLRIYGKILGVPVH---AVKDAADLRLALSELRNK-HIVLIDTIGMSQRDRMVSEQIAMLHGAGAPVKRLLLLNAT 375 (484)
T ss_pred hHHHHHHHHHHHhCCCee---ccCCchhHHHHHHhccCC-CeEEeCCCCcChhhHHHHHHHHHHhccCCCCeeEEEEeCC
Confidence 788888753111000000 000111223344556543 34556665444432 233444444444 68999999
Q ss_pred CCCCCHHHHHHHHHHHHHhhc-CceEEEEecC---------hhHHHhhccEEEEEeCCeEE
Q 035832 188 LAGLDWKARADVVKLLKHLKK-ELTILVVSHD---------LKEMAALVDHSWRMDMGGFL 238 (245)
Q Consensus 188 ts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd---------~~~~~~~~d~v~~l~~G~i~ 238 (245)
+.+ ..+.+.++.++. +.+=+|.|+= ++.+....=-+.++..|+-|
T Consensus 376 ~~~------~~l~~i~~~f~~~~~~g~IlTKlDet~~~G~~l~i~~~~~lPI~yvt~GQ~V 430 (484)
T PRK06995 376 SHG------DTLNEVVQAYRGPGLAGCILTKLDEAASLGGALDVVIRYKLPLHYVSNGQRV 430 (484)
T ss_pred CcH------HHHHHHHHHhccCCCCEEEEeCCCCcccchHHHHHHHHHCCCeEEEecCCCC
Confidence 887 334444555443 3444455652 12222333346777777655
|
|
| >smart00382 AAA ATPases associated with a variety of cellular activities | Back alignment and domain information |
|---|
Probab=99.06 E-value=8.3e-09 Score=78.42 Aligned_cols=117 Identities=35% Similarity=0.356 Sum_probs=76.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCc-ceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhc
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGLSKPTS-GSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFG 122 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~-G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~ 122 (245)
++..+.|+||+|+||||+++.|+..+.... +-+.++... .... ...
T Consensus 1 ~~~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~--------------------------~~~~-~~~------ 47 (148)
T smart00382 1 PGEVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGED--------------------------ILEE-VLD------ 47 (148)
T ss_pred CCCEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEE--------------------------cccc-CHH------
Confidence 467899999999999999999999887543 223322110 0000 000
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 035832 123 WPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKL 202 (245)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~ 202 (245)
... .. .........++++..+..+++|-...|.++++||+..-.+..........
T Consensus 48 ----------~~~--------------~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~viiiDei~~~~~~~~~~~~~~~ 102 (148)
T smart00382 48 ----------QLL--------------LI-IVGGKKASGSGELRLRLALALARKLKPDVLILDEITSLLDAEQEALLLLL 102 (148)
T ss_pred ----------HHH--------------hh-hhhccCCCCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHhh
Confidence 000 00 11233446778888888888888888999999999999999988776641
Q ss_pred ------HHHhh-cCceEEEEecC
Q 035832 203 ------LKHLK-KELTILVVSHD 218 (245)
Q Consensus 203 ------l~~l~-~~~tiii~tHd 218 (245)
..... ....+|+++|.
T Consensus 103 ~~~~~~~~~~~~~~~~~i~~~~~ 125 (148)
T smart00382 103 EELRLLLLLKSEKNLTVILTTND 125 (148)
T ss_pred hhhHHHHHHHhcCCCEEEEEeCC
Confidence 22222 34788888883
|
AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment. |
| >cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases | Back alignment and domain information |
|---|
Probab=99.05 E-value=4e-10 Score=92.60 Aligned_cols=82 Identities=23% Similarity=0.131 Sum_probs=58.9
Q ss_pred eeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCC-CCCc
Q 035832 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPER-YFVA 112 (245)
Q Consensus 34 il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~-~~~~ 112 (245)
..+=+.+.+++|+.++|+||||||||||+++|+|+++|+.|.|.+.+..-... ..+..+++++|.+.. ....
T Consensus 14 ~~~~l~~~v~~g~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~-------~~~~~~~~~~~~~~~~~~~~ 86 (186)
T cd01130 14 QAAYLWLAVEARKNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQL-------PHPNWVRLVTRPGNVEGSGE 86 (186)
T ss_pred HHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCC-------CCCCEEEEEEecCCCCCCCc
Confidence 34556678899999999999999999999999999999999999965321111 113457777766432 2334
Q ss_pred ccHHHHHHhc
Q 035832 113 DNVLDEVIFG 122 (245)
Q Consensus 113 ~tv~e~l~~~ 122 (245)
.+..+.+...
T Consensus 87 ~~~~~~l~~~ 96 (186)
T cd01130 87 VTMADLLRSA 96 (186)
T ss_pred cCHHHHHHHH
Confidence 5677766543
|
The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase. |
| >TIGR01026 fliI_yscN ATPase FliI/YscN family | Back alignment and domain information |
|---|
Probab=99.04 E-value=9.8e-10 Score=101.38 Aligned_cols=178 Identities=19% Similarity=0.217 Sum_probs=107.3
Q ss_pred cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCC---CCCCCCCCCCCcEEEEecCCCC
Q 035832 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGE---PNNSPEPLPPEKVGIVFQFPER 108 (245)
Q Consensus 32 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~---~~~~~~~~~~~~i~~v~Q~~~~ 108 (245)
..+++++ |.+.+|+.++|+|+||+|||||+++|+|..+++.|.+...|+.-... ..........++..++....+
T Consensus 151 i~~iD~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~r~~ev~~~~~~~~~~~~l~~tvvv~~~~d- 228 (440)
T TIGR01026 151 VRSIDGL-LTVGKGQRIGIFAGSGVGKSTLLGMIARNTEADVNVIALIGERGREVREFIEHDLGEEGLKRSVVVVATSD- 228 (440)
T ss_pred eeeeeec-cccCCCcEEEEECCCCCCHHHHHHHHhCCCCCCEEEEEEEeecchHHHHHHHHHhcccccceEEEEEECCC-
Confidence 5689999 99999999999999999999999999999999988777765432110 000001111223333333221
Q ss_pred CCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCCh-HHHHHHHHHHHHhhCCCEEEEeCC
Q 035832 109 YFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSG-GYKRRLALAIQLVQVPDLLILDEP 187 (245)
Q Consensus 109 ~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg-Gqkqrv~iAral~~~p~llllDEP 187 (245)
. +..+-.. .......+.+.+...|-+-.. -..+|+- -|.+| .++ +.+.||
T Consensus 229 ~----~p~~r~~------------~~~~a~t~AE~frd~G~~Vll---~~DslTr~A~A~R-Eis---------l~~ge~ 279 (440)
T TIGR01026 229 Q----SPLLRLK------------GAYVATAIAEYFRDQGKDVLL---LMDSVTRFAMAQR-EIG---------LAAGEP 279 (440)
T ss_pred C----CHHHHHH------------HHHHHHHHHHHHHHCCCCEEE---EEeChHHHHHHHH-HHH---------HhcCCC
Confidence 1 1111110 001111222223223432111 1223331 12222 122 345675
Q ss_pred --CCCCCHHHHHHHHHHHHHhhc-Cc-------eEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 188 --LAGLDWKARADVVKLLKHLKK-EL-------TILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 188 --ts~LD~~~~~~i~~~l~~l~~-~~-------tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
+.|+||.....+.+++.+... +. ||++.+||+. ..+||++..+.+|+++.+..
T Consensus 280 P~~~Gypp~~~~~l~~l~ERag~~~~GSIT~i~tVl~~~~d~~--dpi~d~~~~i~dG~ivLsr~ 342 (440)
T TIGR01026 280 PATKGYTPSVFSTLPRLLERAGASGKGSITAFYTVLVEGDDMN--EPIADSVRGILDGHIVLSRA 342 (440)
T ss_pred CcccccChhHHHHHHHHHHHhccCCCCeeeEEEEEEccCcCCC--cchhhhhccccceEEEEecc
Confidence 569999999999999999753 34 8888999985 56899999999999987643
|
This family of ATPases demonstrates extensive homology with ATP synthase F1, beta subunit. It is a mixture of members with two different protein functions. The first group is exemplified by Salmonella typhimurium FliI protein. It is needed for flagellar assembly, its ATPase activity is required for flagellation, and it may be involved in a specialized protein export pathway that proceeds without signal peptide cleavage. The second group of proteins function in the export of virulence proteins; exemplified by Yersinia sp. YscN protein an ATPase involved in the type III secretory pathway for the antihost Yops proteins. |
| >PRK13891 conjugal transfer protein TrbE; Provisional | Back alignment and domain information |
|---|
Probab=99.04 E-value=5.2e-09 Score=104.17 Aligned_cols=54 Identities=30% Similarity=0.386 Sum_probs=48.9
Q ss_pred HHHHHhhCCCEEEEeCCCCCC-CHHHHHHHHHHHHHhhc-CceEEEEecChhHHHh
Q 035832 171 LAIQLVQVPDLLILDEPLAGL-DWKARADVVKLLKHLKK-ELTILVVSHDLKEMAA 224 (245)
Q Consensus 171 iAral~~~p~llllDEPts~L-D~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~ 224 (245)
|++++..+|+++++|||+.+| |+..++.+.+.++.+++ +.+++++||+++.+..
T Consensus 680 i~~~l~~~p~illlDE~w~~L~d~~~~~~i~~~lk~~RK~g~~vil~TQs~~d~~~ 735 (852)
T PRK13891 680 IERALKGQPAVIILDEAWLMLGHPAFRAKIREWLKVLRKANCLVLMATQSLSDAAN 735 (852)
T ss_pred HHHHhcCCCCEEEEeCchhhcCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHhh
Confidence 677889999999999999999 79999999999999864 6899999999998865
|
|
| >TIGR02655 circ_KaiC circadian clock protein KaiC | Back alignment and domain information |
|---|
Probab=99.04 E-value=1.7e-12 Score=121.50 Aligned_cols=160 Identities=15% Similarity=0.159 Sum_probs=97.5
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHH--hCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHH
Q 035832 41 SLPEKSFGLIFGRSGSGKTTLLQLL--AGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDE 118 (245)
Q Consensus 41 ~i~~Ge~~~liG~nGsGKSTLl~~l--~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~ 118 (245)
=+.+|..+.|.||+|||||||.... .|+.++.+..+++....- ..... ...+.+||-+++... . ++
T Consensus 17 Glp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~eE~----~~~l~-~~~~~~G~~~~~~~~---~----g~ 84 (484)
T TIGR02655 17 GLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFEES----PQDII-KNARSFGWDLQKLVD---E----GK 84 (484)
T ss_pred CCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEecC----HHHHH-HHHHHcCCCHHHHhh---c----Cc
Confidence 4789999999999999999999865 466554445555543210 00000 001234443332210 0 00
Q ss_pred HHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHH--HHHhhCCCEEEEeCCCCCCCHHHH
Q 035832 119 VIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALA--IQLVQVPDLLILDEPLAGLDWKAR 196 (245)
Q Consensus 119 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iA--ral~~~p~llllDEPts~LD~~~~ 196 (245)
+.+- .. ... .....+++.+++.+. +++.+..+|+|++|||.|+ .+|...|+.. +..+
T Consensus 85 l~~~-~~-----~~~----~~~~~~~~~~~l~~~-l~~i~~~ls~g~~qRVvIDSl~aL~~~~~~~----------~~~r 143 (484)
T TIGR02655 85 LFIL-DA-----SPD----PEGQDVVGGFDLSAL-IERINYAIRKYKAKRVSIDSVTAVFQQYDAV----------SVVR 143 (484)
T ss_pred eEEE-ec-----Cch----hccccccccCCHHHH-HHHHHHHHHHhCCcEEEEeehhHhhhhcCch----------HHHH
Confidence 0000 00 000 001112344555544 5777889999999999999 5666665544 5678
Q ss_pred HHHHHHHHHhhc-CceEEEEecChhH---------HHhhccEEEEEe
Q 035832 197 ADVVKLLKHLKK-ELTILVVSHDLKE---------MAALVDHSWRMD 233 (245)
Q Consensus 197 ~~i~~~l~~l~~-~~tiii~tHd~~~---------~~~~~d~v~~l~ 233 (245)
+.++++++.+++ ++|+|++||+.+. ...+||.|+.|+
T Consensus 144 ~~l~~Li~~L~~~g~TvLLtsh~~~~~~~~~~~~~~e~laDgVI~L~ 190 (484)
T TIGR02655 144 REIFRLVARLKQIGVTTVMTTERIEEYGPIARYGVEEFVSDNVVILR 190 (484)
T ss_pred HHHHHHHHHHHHCCCEEEEEecCcccccccccCCceeEeeeeEEEEE
Confidence 889999988865 6999999998764 256789999886
|
Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. |
| >cd02023 UMPK Uridine monophosphate kinase (UMPK, EC 2 | Back alignment and domain information |
|---|
Probab=99.03 E-value=2e-10 Score=95.09 Aligned_cols=115 Identities=17% Similarity=0.083 Sum_probs=67.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQ 126 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~ 126 (245)
+++|.||||||||||.++|++++ ..|.+.+.+.|....... ........++.++. +.
T Consensus 1 iigi~G~~GsGKSTl~~~l~~~l--~~~~~~v~~~D~~~~~~~--~~~~~~~~~~~~~~------------------~~- 57 (198)
T cd02023 1 IIGIAGGSGSGKTTVAEEIIEQL--GNPKVVIISQDSYYKDLS--HEELEERKNNNYDH------------------PD- 57 (198)
T ss_pred CEEEECCCCCCHHHHHHHHHHHh--CCCCeEEEEecccccccc--cccHHHhccCCCCC------------------CC-
Confidence 58999999999999999999998 344454433321100000 00000000000110 00
Q ss_pred CCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 035832 127 SGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKA 195 (245)
Q Consensus 127 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~ 195 (245)
.. ..+...+.+..+..... .+.+..++|.|++++..+ .+.+|+++|+|+|+.+.++..
T Consensus 58 --~~-----~~~~~~~~l~~l~~~~~-~~~p~~d~~~~~~~~~~~---~i~~~~~vI~eg~~~~~~~~~ 115 (198)
T cd02023 58 --AF-----DFDLLISHLQDLKNGKS-VEIPVYDFKTHSRLKETV---TVYPADVIILEGILALYDKEL 115 (198)
T ss_pred --cc-----cHHHHHHHHHHHHCCCC-EeccccccccCcccCCce---ecCCCCEEEEechhhccchhH
Confidence 00 01123344555555443 577888999999877655 578899999999999998643
|
7.1.48), also known as uridine kinase or uridine-cytidine kinase (UCK), catalyzes the reversible phosphoryl transfer from ATP to uridine or cytidine to yield UMP or CMP. In the primidine nucleotide-salvage pathway, this enzyme combined with nucleoside diphosphate kinases further phosphorylates UMP and CMP to form UTP and CTP. This kinase also catalyzes the phosphorylation of several cytotoxic ribonucleoside analogs such as 5-flurrouridine and cyclopentenyl-cytidine. |
| >PRK14079 recF recombination protein F; Provisional | Back alignment and domain information |
|---|
Probab=99.00 E-value=1.1e-09 Score=98.64 Aligned_cols=76 Identities=26% Similarity=0.326 Sum_probs=62.3
Q ss_pred CCCChHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEE
Q 035832 159 HSLSGGYKRRLALAIQLV---------QVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHS 229 (245)
Q Consensus 159 ~~LSgGqkqrv~iAral~---------~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v 229 (245)
..+|+||++++++|+.|+ .+|+++|||||+++||+..+..+.+.|.... .++|-+|+ ....|+++
T Consensus 262 ~~~S~Gqqr~~~lal~la~~~~~~~~~~~~pilLlDd~~seLD~~~~~~l~~~l~~~~--q~~it~t~----~~~~~~~~ 335 (349)
T PRK14079 262 RYASRGEARTVALALRLAEHRLLWEHFGEAPVLLVDDFTAELDPRRRGALLALAASLP--QAIVAGTE----APPGAALT 335 (349)
T ss_pred HhCChhHHHHHHHHHHHHHHHHHHHhcCCCCEEEEcccchhcCHHHHHHHHHHHhcCC--cEEEEcCC----CCCCCceE
Confidence 468999999999999999 8999999999999999999999998886542 23333333 24678999
Q ss_pred EEEeCCeEEEe
Q 035832 230 WRMDMGGFLVE 240 (245)
Q Consensus 230 ~~l~~G~i~~~ 240 (245)
+.+++|++..+
T Consensus 336 ~~~~~~~~~~~ 346 (349)
T PRK14079 336 LRIEAGVFTPE 346 (349)
T ss_pred EEEeccEecCC
Confidence 99999887654
|
|
| >COG0419 SbcC ATPase involved in DNA repair [DNA replication, recombination, and repair] | Back alignment and domain information |
|---|
Probab=98.98 E-value=2.4e-09 Score=107.43 Aligned_cols=78 Identities=28% Similarity=0.371 Sum_probs=68.0
Q ss_pred CCCCCCChHHHHHHHHHHHH------hhC--CCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhc
Q 035832 156 KDPHSLSGGYKRRLALAIQL------VQV--PDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALV 226 (245)
Q Consensus 156 ~~~~~LSgGqkqrv~iAral------~~~--p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~ 226 (245)
+++.+|||||+-.++||.+| ..+ -++++|||||..||+.+.+.+++.|..+.. +.+|+||||+.++. ..+
T Consensus 811 r~~~~LSGGE~~~~sLalrLALs~~~~~~~~l~~l~LDEpf~~LD~e~l~~l~~~l~~i~~~~~qiiIISH~eel~-e~~ 889 (908)
T COG0419 811 RPIKTLSGGERFLASLALRLALSDLLQGRARLELLFLDEPFGTLDEERLEKLAEILEELLSDGRQIIIISHVEELK-ERA 889 (908)
T ss_pred cccccCCchHHHHHHHHHHHHHHHHHhcccCCCeeEeeCCCCCCCHHHHHHHHHHHHHHHhcCCeEEEEeChHHHH-HhC
Confidence 68899999999988887776 345 699999999999999999999999999976 48999999998764 678
Q ss_pred cEEEEEeC
Q 035832 227 DHSWRMDM 234 (245)
Q Consensus 227 d~v~~l~~ 234 (245)
|.++.++.
T Consensus 890 ~~~i~V~k 897 (908)
T COG0419 890 DVRIRVKK 897 (908)
T ss_pred CeEEEEEe
Confidence 88888864
|
|
| >TIGR02680 conserved hypothetical protein TIGR02680 | Back alignment and domain information |
|---|
Probab=98.96 E-value=1.1e-09 Score=113.34 Aligned_cols=63 Identities=32% Similarity=0.452 Sum_probs=55.8
Q ss_pred CCCCCCCChHHHHHHH----HHHH--------HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecCh
Q 035832 155 DKDPHSLSGGYKRRLA----LAIQ--------LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDL 219 (245)
Q Consensus 155 ~~~~~~LSgGqkqrv~----iAra--------l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~ 219 (245)
++.++.|||||||+++ +|++ +..+|++++|||||+|||+.++..++++|.++ +.++||+||.+
T Consensus 1242 ~~~~~~lSgGek~~~~~~~l~a~~~~~y~~~~~~~~p~lilLDEp~a~lD~~~~~~~~~ll~~l--~~~~i~~s~~~ 1316 (1353)
T TIGR02680 1242 THRFGPASGGERALALYVPLFAAASSHYTQEAYPHAPRLILLDEAFAGVDDNARAHLFGLLRAL--DLDFVMTSERE 1316 (1353)
T ss_pred hccccCCCchHHHHHHHHHHHHHHHHhhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHh--CCCEEEEccch
Confidence 4567899999999996 5755 55899999999999999999999999999888 57899999985
|
Members of this protein family belong to a conserved gene four-gene neighborhood found sporadically in a phylogenetically broad range of bacteria: Nocardia farcinica, Symbiobacterium thermophilum, and Streptomyces avermitilis (Actinobacteria), Geobacillus kaustophilus (Firmicutes), Azoarcus sp. EbN1 and Ralstonia solanacearum (Betaproteobacteria). Proteins in this family average over 1400 amino acids in length. |
| >PRK06315 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=4.8e-10 Score=103.11 Aligned_cols=169 Identities=19% Similarity=0.196 Sum_probs=99.6
Q ss_pred cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-CcceEEEcC---ccCCCCCCCCCCCCCCCcEEEE-----
Q 035832 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP-TSGSINIRG---YNNDGEPNNSPEPLPPEKVGIV----- 102 (245)
Q Consensus 32 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g---~~~~~~~~~~~~~~~~~~i~~v----- 102 (245)
..+++++ |.+.+|+.++|+|+||+|||||+++|+|+.++ +.|.|.+.| .++.......... ...+.+++
T Consensus 152 i~aID~~-l~i~~Gq~i~I~G~sG~GKStLl~~I~~~~~~~~~~vi~liGerg~ev~~~~~~~l~~-~g~~~svvvvats 229 (442)
T PRK06315 152 VRCIDGM-LTVARGQRIGIFAGAGVGKSSLLGMIARNAEEADVNVIALIGERGREVREFIEGDLGE-EGMKRSVIVVSTS 229 (442)
T ss_pred EEEEecc-ccccCCcEEEEECCCCCCcchHHHHhhcccccCCceEEEEECCCchHHHHHHHHHHHh-cCCceEEEEEeCC
Confidence 4588988 99999999999999999999999999999854 446666644 4442211110111 12335555
Q ss_pred ecCCCCCCC----cccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCC----CccCCCCCCCCChHHHHHHHHHHH
Q 035832 103 FQFPERYFV----ADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLD----GTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 103 ~Q~~~~~~~----~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~----~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
+|+|...+. ..++.|.+... ............++.++++.+++. ......+|+.||. +++-
T Consensus 230 ~q~p~~rlnp~~va~~IAE~~r~~----g~~Vl~~~Ds~tR~a~alreV~L~~gepp~~~gypP~~fS~-------l~~l 298 (442)
T PRK06315 230 DQSSQLRLNAAYVGTAIAEYFRDQ----GKTVVLMMDSVTRFARALREVGLAAGEPPARAGYTPSVFST-------LPKL 298 (442)
T ss_pred CCCHHHHhhHHHHHHHHHHHHHHc----CCCcchhhhHHHHHHHHHHHhCcCCCCCccccCCCCchhhH-------hHHH
Confidence 888743322 22344444321 011001123345677888888883 2235777777763 2221
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-----ceEEEEecChhHHHhhccEEEEEeCCeEEEe
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKE-----LTILVVSHDLKEMAALVDHSWRMDMGGFLVE 240 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-----~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~ 240 (245)
+=.--+ ...+ .||++..+|+++ .++|.+..+-||+++.+
T Consensus 299 lERag~-------------------------~~~GSITai~tVl~~gdD~~d--pi~d~~~~i~dg~ivLs 342 (442)
T PRK06315 299 LERSGA-------------------------SDKGTITAFYTVLVAGDDMNE--PVADEVKSILDGHIVLS 342 (442)
T ss_pred HHHhcC-------------------------CCCcceeeeEEEEecCCCCCc--ccHHHhhhhcceEEEEe
Confidence 100000 0122 367777778764 47788888888888764
|
|
| >PRK05399 DNA mismatch repair protein MutS; Provisional | Back alignment and domain information |
|---|
Probab=98.95 E-value=6e-09 Score=103.62 Aligned_cols=135 Identities=20% Similarity=0.178 Sum_probs=85.9
Q ss_pred ceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCC
Q 035832 33 DILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLS-KPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFV 111 (245)
Q Consensus 33 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~ 111 (245)
.+=+|++|. +.+.++.|.|||.+||||+||.++-+. -.+-|. |||-...
T Consensus 596 ~vpnd~~l~-~~~~~~iiTGpN~~GKSt~lr~v~l~~ilAq~G~-------------------------~VPa~~a---- 645 (854)
T PRK05399 596 FVPNDCDLD-EERRLLLITGPNMAGKSTYMRQVALIVLLAQIGS-------------------------FVPAESA---- 645 (854)
T ss_pred eEecceeeC-CCCcEEEEECCCCCCcHHHHHHHHHHHHHHhcCC-------------------------ceeccce----
Confidence 456788887 678899999999999999999986442 112221 2221110
Q ss_pred cccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh--CCCEEEEeCC--
Q 035832 112 ADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ--VPDLLILDEP-- 187 (245)
Q Consensus 112 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~--~p~llllDEP-- 187 (245)
...+.+.+ +.++|-. |.-...+|-=+.....++.+|-. ++.++|+|||
T Consensus 646 ~i~~~d~I------------------------~triga~----d~i~~g~STF~~E~~~~~~il~~at~~sLvllDE~Gr 697 (854)
T PRK05399 646 RIGIVDRI------------------------FTRIGAS----DDLASGRSTFMVEMTETANILNNATERSLVLLDEIGR 697 (854)
T ss_pred EecccCee------------------------eeccCcc----cccccCcccHHHHHHHHHHHHHhCCCCcEEEEecCCC
Confidence 00011111 0111211 22344577777777777777755 9999999999
Q ss_pred -CCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccE
Q 035832 188 -LAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDH 228 (245)
Q Consensus 188 -ts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~ 228 (245)
|+.+|..+ ..+.+++.+.+ +.++|++||..+ +..++++
T Consensus 698 GTs~~dg~a--ia~aile~l~~~~~~~~l~aTH~~e-l~~l~~~ 738 (854)
T PRK05399 698 GTSTYDGLS--IAWAVAEYLHDKIGAKTLFATHYHE-LTELEEK 738 (854)
T ss_pred CCCcchhHH--HHHHHHHHHHhcCCceEEEEechHH-HHHHhhh
Confidence 99999443 45666666653 378999999954 5567665
|
|
| >PRK07196 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.90 E-value=1.8e-09 Score=99.13 Aligned_cols=88 Identities=14% Similarity=0.127 Sum_probs=62.2
Q ss_pred cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceE---EEcCccCCCCCCC--CCCCCCCCcEEEEecCC
Q 035832 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSI---NIRGYNNDGEPNN--SPEPLPPEKVGIVFQFP 106 (245)
Q Consensus 32 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i---~~~g~~~~~~~~~--~~~~~~~~~i~~v~Q~~ 106 (245)
..+++++ |++.+|++++|+|+||||||||+++|+|+.+++.+.+ -.++.++...... ......+..+++++|+.
T Consensus 143 i~aID~l-l~I~~GQ~igI~G~sGaGKSTLl~~I~g~~~~dv~vig~IGerg~ev~ef~~~~l~~~gl~rsvvv~~~~d~ 221 (434)
T PRK07196 143 VNAINGL-LTIGKGQRVGLMAGSGVGKSVLLGMITRYTQADVVVVGLIGERGREVKEFIEHSLQAAGMAKSVVVAAPADE 221 (434)
T ss_pred eeeccce-EeEecceEEEEECCCCCCccHHHHHHhcccCCCeEEEEEEeeecHHHHHHHHHHhhhcccceEEEEEecCCC
Confidence 5699999 9999999999999999999999999999999886433 3333333211000 00112245799999997
Q ss_pred CCCCCcccHHHHHHh
Q 035832 107 ERYFVADNVLDEVIF 121 (245)
Q Consensus 107 ~~~~~~~tv~e~l~~ 121 (245)
. .+..+++.++..+
T Consensus 222 s-~~~rl~a~e~a~~ 235 (434)
T PRK07196 222 S-PLMRIKATELCHA 235 (434)
T ss_pred C-hhhhHHHHHHHHH
Confidence 4 5556777777654
|
|
| >PRK08149 ATP synthase SpaL; Validated | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.9e-09 Score=97.61 Aligned_cols=75 Identities=24% Similarity=0.301 Sum_probs=60.1
Q ss_pred cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCc---ceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCC
Q 035832 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTS---GSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPE 107 (245)
Q Consensus 32 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~ 107 (245)
..+++++ |++.+||+++|+|+||+|||||+++|++...++. |.|...|.++.............+++++|+...+
T Consensus 139 i~aid~l-l~i~~Gq~i~I~G~sG~GKTTLl~~i~~~~~~dv~v~g~Ig~rg~ev~e~~~~~l~~~~~~~~~vV~~~sd 216 (428)
T PRK08149 139 VRAIDGL-LTCGVGQRMGIFASAGCGKTSLMNMLIEHSEADVFVIGLIGERGREVTEFVESLRASSRREKCVLVYATSD 216 (428)
T ss_pred cEEEeee-eeEecCCEEEEECCCCCChhHHHHHHhcCCCCCeEEEEEEeeCCccHHHHHHHHhhcccccceEEEEECCC
Confidence 4699999 9999999999999999999999999999999887 8888888876432221222233578999988753
|
|
| >PLN03210 Resistant to P | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.8e-08 Score=102.05 Aligned_cols=44 Identities=27% Similarity=0.257 Sum_probs=36.3
Q ss_pred eeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCCcceEEEcC
Q 035832 37 GVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLS-KPTSGSINIRG 80 (245)
Q Consensus 37 ~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~-~p~~G~i~~~g 80 (245)
-+++..+.+++++|+|++|+|||||++.+++.+ ...+|.+++++
T Consensus 199 lL~l~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~ 243 (1153)
T PLN03210 199 LLHLESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDR 243 (1153)
T ss_pred HHccccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeec
Confidence 356778899999999999999999999995544 45588888864
|
syringae 6; Provisional |
| >TIGR02903 spore_lon_C ATP-dependent protease, Lon family | Back alignment and domain information |
|---|
Probab=98.77 E-value=3e-08 Score=95.49 Aligned_cols=110 Identities=19% Similarity=0.287 Sum_probs=73.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCcce--------EEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccH
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGS--------INIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNV 115 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~--------i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv 115 (245)
..+.++|+||||+|||||++++.++.++..|+ +.+++..+. + ....
T Consensus 174 ~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~l~-------------------------~-d~~~ 227 (615)
T TIGR02903 174 FPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTTLR-------------------------W-DPRE 227 (615)
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechhcc-------------------------C-CHHH
Confidence 45679999999999999999999988665443 333322110 0 0000
Q ss_pred HHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 035832 116 LDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKA 195 (245)
Q Consensus 116 ~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~ 195 (245)
..+..++.. .........+.++.+|+... ....+.++||| +|+||| +..||+..
T Consensus 228 i~~~llg~~--------~~~~~~~a~~~l~~~gl~~~-~~g~v~~asgG----------------vL~LDE-i~~Ld~~~ 281 (615)
T TIGR02903 228 VTNPLLGSV--------HDPIYQGARRDLAETGVPEP-KTGLVTDAHGG----------------VLFIDE-IGELDPLL 281 (615)
T ss_pred HhHHhcCCc--------cHHHHHHHHHHHHHcCCCch-hcCchhhcCCC----------------eEEEec-cccCCHHH
Confidence 112222210 01111234455778898765 57889999999 999999 79999999
Q ss_pred HHHHHHHHHH
Q 035832 196 RADVVKLLKH 205 (245)
Q Consensus 196 ~~~i~~~l~~ 205 (245)
+..+++.|++
T Consensus 282 Q~~Ll~~Le~ 291 (615)
T TIGR02903 282 QNKLLKVLED 291 (615)
T ss_pred HHHHHHHHhh
Confidence 9999999975
|
Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC. |
| >PRK09825 idnK D-gluconate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.77 E-value=3.2e-09 Score=86.61 Aligned_cols=69 Identities=19% Similarity=0.179 Sum_probs=48.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhc
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFG 122 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~ 122 (245)
+||+++|+|+||||||||+++|+|++.+ +.++|.++.... ..++...|+.+|+.. .++..++..+..+.
T Consensus 2 ~ge~i~l~G~sGsGKSTl~~~la~~l~~----~~i~gd~~~~~~-----~~r~~~~g~~~~~~~-~~~~~~~~~~~~~~ 70 (176)
T PRK09825 2 AGESYILMGVSGSGKSLIGSKIAALFSA----KFIDGDDLHPAK-----NIDKMSQGIPLTDED-RLPWLERLNDASYS 70 (176)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhcCC----EEECCcccCCHh-----HHHHHhcCCCCCccc-chHHHHHHHHHHHH
Confidence 6999999999999999999999999887 578887653211 011123567777653 44566777776654
|
|
| >TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family | Back alignment and domain information |
|---|
Probab=98.77 E-value=1.1e-09 Score=92.49 Aligned_cols=39 Identities=28% Similarity=0.455 Sum_probs=29.6
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHh--CCCCCCcceEEEcC
Q 035832 41 SLPEKSFGLIFGRSGSGKTTLLQLLA--GLSKPTSGSINIRG 80 (245)
Q Consensus 41 ~i~~Ge~~~liG~nGsGKSTLl~~l~--Gl~~p~~G~i~~~g 80 (245)
-+++|++++|.||+|||||||...++ ++ .+..+.+++..
T Consensus 16 Gi~~G~~~~i~G~~G~GKT~l~~~~~~~~~-~~g~~~~~is~ 56 (229)
T TIGR03881 16 GIPRGFFVAVTGEPGTGKTIFCLHFAYKGL-RDGDPVIYVTT 56 (229)
T ss_pred CCcCCeEEEEECCCCCChHHHHHHHHHHHH-hcCCeEEEEEc
Confidence 57899999999999999999987654 44 34445566643
|
Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain. |
| >cd01876 YihA_EngB The YihA (EngB) subfamily | Back alignment and domain information |
|---|
Probab=98.76 E-value=2.1e-08 Score=79.00 Aligned_cols=64 Identities=9% Similarity=0.087 Sum_probs=44.4
Q ss_pred HHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH-----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHh
Q 035832 139 NLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL-----VQVPDLLILDEPLAGLDWKARADVVKLLKHL 206 (245)
Q Consensus 139 ~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral-----~~~p~llllDEPts~LD~~~~~~i~~~l~~l 206 (245)
.+.+++..++..-.....+...+|++++++....... ...|+++ |+|++|..+..++++.|.++
T Consensus 101 ~~~~~l~~~~~~vi~v~nK~D~~~~~~~~~~~~~~~~~l~~~~~~~~~~----~~Sa~~~~~~~~l~~~l~~~ 169 (170)
T cd01876 101 EMLDWLEELGIPFLVVLTKADKLKKSELAKALKEIKKELKLFEIDPPII----LFSSLKGQGIDELRALIEKW 169 (170)
T ss_pred HHHHHHHHcCCCEEEEEEchhcCChHHHHHHHHHHHHHHHhccCCCceE----EEecCCCCCHHHHHHHHHHh
Confidence 3455666666442223445777899998887666553 3445665 99999999999999988764
|
This subfamily of GTPases is typified by the E. coli YihA, an essential protein involved in cell division control. YihA and its orthologs are small proteins that typically contain less than 200 amino acid residues and consists of the GTPase domain only (some of the eukaryotic homologs contain an N-terminal extension of about 120 residues that might be involved in organellar targeting). Homologs of yihA are found in most Gram-positive and Gram-negative pathogenic bacteria, with the exception of Mycobacterium tuberculosis. The broad-spectrum nature of YihA and its essentiality for cell viability in bacteria make it an attractive antibacterial target. |
| >PRK13898 type IV secretion system ATPase VirB4; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=9.9e-07 Score=87.63 Aligned_cols=51 Identities=22% Similarity=0.357 Sum_probs=44.3
Q ss_pred HHhhCCCEEEEeCCCCCCC-HHHHHHHHHHHHHhhc-CceEEEEecChhHHHh
Q 035832 174 QLVQVPDLLILDEPLAGLD-WKARADVVKLLKHLKK-ELTILVVSHDLKEMAA 224 (245)
Q Consensus 174 al~~~p~llllDEPts~LD-~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~ 224 (245)
.+..+|.++++|||...|| +...+.+.+.++.+++ +..++++||+++++..
T Consensus 638 ~~~g~p~il~iDE~w~~L~~~~~~~~i~~~lk~~RK~~~~~i~~TQ~~~d~~~ 690 (800)
T PRK13898 638 SLDGTPSMIVLDEAWALIDNPVFAPKIKDWLKVLRKLNTFVIFATQSVEDASK 690 (800)
T ss_pred HhcCCCcEEEEeCChhhCCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHh
Confidence 3467899999999999999 8889999999999864 6899999999987653
|
|
| >PF13558 SbcCD_C: Putative exonuclease SbcCD, C subunit; PDB: 3QG5_B 3QF7_A 3THO_A 3EUK_H 3EUJ_A 3AV0_B 3AUY_B 3AUX_A | Back alignment and domain information |
|---|
Probab=98.70 E-value=2.6e-08 Score=72.37 Aligned_cols=51 Identities=33% Similarity=0.503 Sum_probs=39.3
Q ss_pred CCCCCCCChHHHH-HHHHHHH------Hhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 035832 155 DKDPHSLSGGYKR-RLALAIQ------LVQ------VPDLLILDEPLAGLDWKARADVVKLLKH 205 (245)
Q Consensus 155 ~~~~~~LSgGqkq-rv~iAra------l~~------~p~llllDEPts~LD~~~~~~i~~~l~~ 205 (245)
.+...++|||||| .+.+|.+ +.. .|.+++|||||++||+...+.++++|++
T Consensus 27 ~~~~~~~SGGEk~~~~~l~l~aal~~~~~~~~~~~~~~~~l~lDEaF~~lD~~~~~~~~~~l~~ 90 (90)
T PF13558_consen 27 SRSFGTLSGGEKQFPFYLALAAALAALYSSSSGRGDSPRLLFLDEAFSKLDEENIERLMDLLRQ 90 (90)
T ss_dssp EEEGGGS-HHHHHHHHHHHHHHHHHHHHHTTSTS-TTBSEEEEESTTTTCGHHHHHHHHHHHHH
T ss_pred eccCCCCChhHhHHHHHHHHHHHHHHHHhhhcCCCCCcCEEEEeCCCCcCCHHHHHHHHHHHhC
Confidence 4577899999994 4444333 333 3799999999999999999999999874
|
|
| >PRK07594 type III secretion system ATPase SsaN; Validated | Back alignment and domain information |
|---|
Probab=98.69 E-value=2.3e-08 Score=91.85 Aligned_cols=63 Identities=21% Similarity=0.248 Sum_probs=55.5
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCc
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGY 81 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~ 81 (245)
.++.+.++..+..+ ..+++++ |++.+||.++|+|+||+|||||+++|+|+.+++.|.+.+.|+
T Consensus 129 ~~~r~~v~~~l~tG-i~aID~l-l~i~~GqrigI~G~sG~GKSTLL~~I~~~~~~d~~vi~~iGe 191 (433)
T PRK07594 129 AMVRQPITQPLMTG-IRAIDSV-ATCGEGQRVGIFSAPGVGKSTLLAMLCNAPDADSNVLVLIGE 191 (433)
T ss_pred ceeccCHhheeCCC-ceeeeee-eecCCCCEEEEECCCCCCccHHHHHhcCCCCCCEEEEEEECC
Confidence 47778888777543 5699999 999999999999999999999999999999999998877665
|
|
| >TIGR01420 pilT_fam pilus retraction protein PilT | Back alignment and domain information |
|---|
Probab=98.67 E-value=3.3e-07 Score=82.40 Aligned_cols=54 Identities=15% Similarity=0.173 Sum_probs=39.0
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEE
Q 035832 170 ALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSW 230 (245)
Q Consensus 170 ~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~ 230 (245)
++++||-.+|+++++||+. |+++....++ ....+.+++.+.|..+.. ...+|+.
T Consensus 187 ~l~~~lr~~pd~i~vgEir---d~~~~~~~l~---aa~tGh~v~~T~Ha~~~~-~~~~Rl~ 240 (343)
T TIGR01420 187 ALRAALREDPDVILIGEMR---DLETVELALT---AAETGHLVFGTLHTNSAA-QTIERII 240 (343)
T ss_pred HHHHhhccCCCEEEEeCCC---CHHHHHHHHH---HHHcCCcEEEEEcCCCHH-HHHHHHH
Confidence 4677888999999999997 8887765443 334578899999985543 3445554
|
This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation. |
| >PF13555 AAA_29: P-loop containing region of AAA domain | Back alignment and domain information |
|---|
Probab=98.67 E-value=2.7e-08 Score=66.89 Aligned_cols=39 Identities=28% Similarity=0.457 Sum_probs=31.9
Q ss_pred eeeeeEEEcC-CCEEEEECCCCCcHHHHHHHHhCCCCCCc
Q 035832 35 LNGVSFSLPE-KSFGLIFGRSGSGKTTLLQLLAGLSKPTS 73 (245)
Q Consensus 35 l~~vsl~i~~-Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~ 73 (245)
+++-++++.+ |+++.|.||||||||||+.+|.=++-+..
T Consensus 12 f~~~~~~~~~~g~~tli~G~nGsGKSTllDAi~~~L~~~~ 51 (62)
T PF13555_consen 12 FDGETIDFDPRGDVTLITGPNGSGKSTLLDAIQTVLYGNT 51 (62)
T ss_pred cCCeEEeecCCCcEEEEECCCCCCHHHHHHHHHHHHcCCc
Confidence 4556777775 67999999999999999999987776654
|
|
| >PRK10078 ribose 1,5-bisphosphokinase; Provisional | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.8e-08 Score=82.65 Aligned_cols=55 Identities=18% Similarity=0.156 Sum_probs=40.9
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCC
Q 035832 45 KSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFP 106 (245)
Q Consensus 45 Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~ 106 (245)
|++++|+||||||||||+++|++...+ .+.+.+..+..... ......+++++|++
T Consensus 2 g~~i~l~G~sGsGKsTl~~~l~~~~~~---~~~~~~~~~~~~~~----~~~~~~~~~~~~~~ 56 (186)
T PRK10078 2 GKLIWLMGPSGSGKDSLLAALRQREQT---QLLVAHRYITRPAS----AGSENHIALSEQEF 56 (186)
T ss_pred CcEEEEECCCCCCHHHHHHHHhccCCC---eEEEcCEECCCccc----hhHHhheeEcHHHH
Confidence 789999999999999999999999876 57777665543211 11234678888875
|
|
| >PRK00454 engB GTP-binding protein YsxC; Reviewed | Back alignment and domain information |
|---|
Probab=98.66 E-value=1.4e-08 Score=83.17 Aligned_cols=64 Identities=8% Similarity=0.078 Sum_probs=46.2
Q ss_pred HHHHHHHcCCCCccCCCCCCCCChHHHHHHH--HHHHHhh-CCCEEEEeCCCCCCCHHHHHHHHHHHHHhh
Q 035832 140 LQRAINWVGLDGTSLDKDPHSLSGGYKRRLA--LAIQLVQ-VPDLLILDEPLAGLDWKARADVVKLLKHLK 207 (245)
Q Consensus 140 ~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~--iAral~~-~p~llllDEPts~LD~~~~~~i~~~l~~l~ 207 (245)
+.++++..++.-...-.++..+|+|++|++. +++.+-. +++++ |+|++|..+.+++++.|.++.
T Consensus 127 i~~~l~~~~~~~iiv~nK~Dl~~~~~~~~~~~~i~~~l~~~~~~~~----~~Sa~~~~gi~~l~~~i~~~~ 193 (196)
T PRK00454 127 MIEWLKEYGIPVLIVLTKADKLKKGERKKQLKKVRKALKFGDDEVI----LFSSLKKQGIDELRAAIAKWL 193 (196)
T ss_pred HHHHHHHcCCcEEEEEECcccCCHHHHHHHHHHHHHHHHhcCCceE----EEEcCCCCCHHHHHHHHHHHh
Confidence 4455666666422345567889999999987 5555544 34443 999999999999999998764
|
|
| >cd01136 ATPase_flagellum-secretory_path_III Flagellum-specific ATPase/type III secretory pathway virulence-related protein | Back alignment and domain information |
|---|
Probab=98.65 E-value=5.9e-08 Score=86.29 Aligned_cols=57 Identities=26% Similarity=0.351 Sum_probs=48.7
Q ss_pred EEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCc
Q 035832 23 VSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGY 81 (245)
Q Consensus 23 l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~ 81 (245)
++..|.. ...+++++ |.+.+|++++|+|+||+|||||+++|+|+..|+.|.+..-|+
T Consensus 49 ~~~~l~t-Gi~aiD~l-~~i~~Gqri~I~G~sG~GKTtLl~~Ia~~~~~~~~vi~~iGe 105 (326)
T cd01136 49 IDEVLPT-GVRAIDGL-LTVGKGQRLGIFAGSGVGKSTLLGMIARGTTADVNVIALIGE 105 (326)
T ss_pred ceeEcCC-CcEEEeee-eEEcCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEec
Confidence 4444543 35689999 999999999999999999999999999999999888877664
|
This group of ATPases are responsible for the export of flagellum and virulence-related proteins. The bacterial flagellar motor is similar to the F0F1-ATPase, in that they both are proton driven rotary molecular devices. However, the main function of the bacterial flagellar motor is to rotate the flagellar filament for cell motility. Intracellular pathogens such as Salmonella and Chlamydia also have proteins which are similar to the flagellar-specific ATPase, but function in the secretion of virulence-related proteins via the type III secretory pathway. |
| >PRK09862 putative ATP-dependent protease; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=2.7e-08 Score=93.23 Aligned_cols=62 Identities=21% Similarity=0.175 Sum_probs=55.9
Q ss_pred EEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccC
Q 035832 20 VRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNN 83 (245)
Q Consensus 20 ~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 83 (245)
+.|++..|+. ..+++++++.+..|+.++|+||||||||||++.|.|+++|.+|++.++...+
T Consensus 187 ~~d~~~v~Gq--~~~~~al~laa~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i 248 (506)
T PRK09862 187 QHDLSDVIGQ--EQGKRGLEITAAGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAI 248 (506)
T ss_pred ccCeEEEECc--HHHHhhhheeccCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchh
Confidence 4588888864 4589999999999999999999999999999999999999999999987665
|
|
| >TIGR00235 udk uridine kinase | Back alignment and domain information |
|---|
Probab=98.64 E-value=1.1e-08 Score=85.32 Aligned_cols=29 Identities=34% Similarity=0.261 Sum_probs=27.3
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCC
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGLSKP 71 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p 71 (245)
++|++++|+||||||||||++.|++++++
T Consensus 4 ~~g~vi~I~G~sGsGKSTl~~~l~~~l~~ 32 (207)
T TIGR00235 4 PKGIIIGIGGGSGSGKTTVARKIYEQLGK 32 (207)
T ss_pred CCeEEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 57999999999999999999999999875
|
Model contains a number of longer eukaryotic proteins and starts bringing in phosphoribulokinase hits at scores of 160 and below |
| >TIGR00767 rho transcription termination factor Rho | Back alignment and domain information |
|---|
Probab=98.63 E-value=6.2e-08 Score=87.90 Aligned_cols=53 Identities=23% Similarity=0.198 Sum_probs=48.3
Q ss_pred eEEEEeEEEECCCCccceee-----------eeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILN-----------GVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~-----------~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
-+.++||++.|++. +.+|+ |+++.|.+|+.++|+||+|||||||++.|+..+.
T Consensus 130 ri~Fe~LTf~YP~e-r~~Le~~~~~~~~R~id~~~pig~Gq~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 130 RVLFENLTPLYPNE-RLRLETSTEDLSTRVLDLFAPIGKGQRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CeEEEEeeecCCCc-cceeecCccccceeeeeeEEEeCCCCEEEEECCCCCChhHHHHHHHHhhc
Confidence 49999999999864 46897 9999999999999999999999999999998764
|
Members of this family differ in the specificity of RNA binding. |
| >TIGR00152 dephospho-CoA kinase | Back alignment and domain information |
|---|
Probab=98.63 E-value=4.3e-08 Score=80.54 Aligned_cols=70 Identities=24% Similarity=0.175 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhH--HHhhccEEEEEeCC
Q 035832 164 GYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKE--MAALVDHSWRMDMG 235 (245)
Q Consensus 164 Gqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~--~~~~~d~v~~l~~G 235 (245)
|+-+|..||.++..+|+.+..+| +.+||...+.+.+.+.+..+ +.+|++.+|.+.+ +...||.+++++.+
T Consensus 61 g~idr~~L~~~vf~~~~~~~~le--~ilhP~i~~~i~~~i~~~~~~~~~vvi~~pll~e~~~~~~~D~vv~V~~~ 133 (188)
T TIGR00152 61 GELDRKALGERVFNDPEELKWLN--NLLHPLIREWMKKLLAQFQSKLAYVLLDVPLLFENKLRSLCDRVIVVDVS 133 (188)
T ss_pred CCCCHHHHHHHHhCCHHHHHHHH--HhhCHHHHHHHHHHHHHhhcCCCEEEEEchHhhhCCcHHhCCEEEEEECC
Confidence 78899999999999999988887 78999999999999988764 3699999999865 67789999999865
|
This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases. |
| >PRK01889 GTPase RsgA; Reviewed | Back alignment and domain information |
|---|
Probab=98.57 E-value=8.7e-08 Score=86.56 Aligned_cols=78 Identities=17% Similarity=0.178 Sum_probs=58.2
Q ss_pred eeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCccc
Q 035832 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADN 114 (245)
Q Consensus 35 l~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~t 114 (245)
++.+.-.+.+|++++|+|+||+|||||++.|+|...++.|+|.+++..... . ...+.+++++|... +.+..
T Consensus 185 l~~L~~~L~~g~~~~lvG~sgvGKStLin~L~g~~~~~~G~i~~~~~~g~~--t-----t~~~~l~~l~~~~~--l~Dtp 255 (356)
T PRK01889 185 LDVLAAWLSGGKTVALLGSSGVGKSTLVNALLGEEVQKTGAVREDDSKGRH--T-----TTHRELHPLPSGGL--LIDTP 255 (356)
T ss_pred HHHHHHHhhcCCEEEEECCCCccHHHHHHHHHHhcccceeeEEECCCCCcc--h-----hhhccEEEecCCCe--ecCCC
Confidence 556666778999999999999999999999999999999999997643211 1 12457889998763 33444
Q ss_pred HHHHHHh
Q 035832 115 VLDEVIF 121 (245)
Q Consensus 115 v~e~l~~ 121 (245)
...++.+
T Consensus 256 G~~~~~l 262 (356)
T PRK01889 256 GMRELQL 262 (356)
T ss_pred chhhhcc
Confidence 5555544
|
|
| >PRK09099 type III secretion system ATPase; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=1e-07 Score=87.86 Aligned_cols=49 Identities=31% Similarity=0.420 Sum_probs=46.2
Q ss_pred cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCc
Q 035832 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGY 81 (245)
Q Consensus 32 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~ 81 (245)
..+++++ |.+.+|++++|+|+||+|||||+++|++...++.|.+.+.|+
T Consensus 151 i~~ID~l-~~i~~Gq~~~I~G~sG~GKTtLl~~ia~~~~~d~~vi~~iGe 199 (441)
T PRK09099 151 VRIVDGL-MTLGEGQRMGIFAPAGVGKSTLMGMFARGTQCDVNVIALIGE 199 (441)
T ss_pred ceeccce-eeecCCCEEEEECCCCCCHHHHHHHHhCCCCCCeEEEEEEcc
Confidence 4689999 999999999999999999999999999999999999988874
|
|
| >PF00488 MutS_V: MutS domain V C-terminus | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.9e-06 Score=72.42 Aligned_cols=48 Identities=13% Similarity=0.143 Sum_probs=34.9
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHhhc--CceEEEEecChhHHH
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLL-KHLKK--ELTILVVSHDLKEMA 223 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l-~~l~~--~~tiii~tHd~~~~~ 223 (245)
+.+..++|+||+..|=++.....+...+ +.+.+ +..+|++||+.+...
T Consensus 120 ~~~~sLvliDE~g~gT~~~eg~ai~~aile~l~~~~~~~~i~~TH~~~l~~ 170 (235)
T PF00488_consen 120 ATEKSLVLIDELGRGTNPEEGIAIAIAILEYLLEKSGCFVIIATHFHELAE 170 (235)
T ss_dssp --TTEEEEEESTTTTSSHHHHHHHHHHHHHHHHHTTT-EEEEEES-GGGGG
T ss_pred cccceeeecccccCCCChhHHHHHHHHHHHHHHHhccccEEEEeccchhHH
Confidence 3567899999999999999988776555 44543 578999999987643
|
; InterPro: IPR000432 Mismatch repair contributes to the overall fidelity of DNA replication and is essential for combating the adverse effects of damage to the genome. It involves the correction of mismatched base pairs that have been missed by the proofreading element of the DNA polymerase complex. The post-replicative Mismatch Repair System (MMRS) of Escherichia coli involves MutS (Mutator S), MutL and MutH proteins, and acts to correct point mutations or small insertion/deletion loops produced during DNA replication []. MutS and MutL are involved in preventing recombination between partially homologous DNA sequences. The assembly of MMRS is initiated by MutS, which recognises and binds to mispaired nucleotides and allows further action of MutL and MutH to eliminate a portion of newly synthesized DNA strand containing the mispaired base []. MutS can also collaborate with methyltransferases in the repair of O(6)-methylguanine damage, which would otherwise pair with thymine during replication to create an O(6)mG:T mismatch []. MutS exists as a dimer, where the two monomers have different conformations and form a heterodimer at the structural level []. Only one monomer recognises the mismatch specifically and has ADP bound. Non-specific major groove DNA-binding domains from both monomers embrace the DNA in a clamp-like structure. Mismatch binding induces ATP uptake and a conformational change in the MutS protein, resulting in a clamp that translocates on DNA. MutS is a modular protein with a complex structure [], and is composed of: N-terminal mismatch-recognition domain, which is similar in structure to tRNA endonuclease. Connector domain, which is similar in structure to Holliday junction resolvase ruvC. Core domain, which is composed of two separate subdomains that join together to form a helical bundle; from within the core domain, two helices act as levers that extend towards (but do not touch) the DNA. Clamp domain, which is inserted between the two subdomains of the core domain at the top of the lever helices; the clamp domain has a beta-sheet structure. ATPase domain (connected to the core domain), which has a classical Walker A motif. HTH (helix-turn-helix) domain, which is involved in dimer contacts. The MutS family of proteins is named after the Salmonella typhimurium MutS protein involved in mismatch repair. Homologues of MutS have been found in many species including eukaryotes (MSH 1, 2, 3, 4, 5, and 6 proteins), archaea and bacteria, and together these proteins have been grouped into the MutS family. Although many of these proteins have similar activities to the E. coli MutS, there is significant diversity of function among the MutS family members. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein [].This diversity is even seen within species, where many species encode multiple MutS homologues with distinct functions []. Inter-species homologues may have arisen through frequent ancient horizontal gene transfer of MutS (and MutL) from bacteria to archaea and eukaryotes via endosymbiotic ancestors of mitochondria and chloroplasts []. This entry represents the C-terminal domain found in proteins in the MutS family of DNA mismatch repair proteins. The C-terminal region of MutS is comprised of the ATPase domain and the HTH (helix-turn-helix) domain, the latter being involved in dimer contacts. Yeast MSH3 [], bacterial proteins involved in DNA mismatch repair, and the predicted protein product of the Rep-3 gene of mouse share extensive sequence similarity. Human MSH has been implicated in non-polyposis colorectal carcinoma (HNPCC) and is a mismatch binding protein. ; GO: 0005524 ATP binding, 0030983 mismatched DNA binding, 0006298 mismatch repair; PDB: 1FW6_A 1EWQ_A 1EWR_B 1NNE_B 2WTU_A 1OH7_A 1OH5_B 1W7A_B 1NG9_A 1OH8_B .... |
| >PRK00300 gmk guanylate kinase; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=5.9e-08 Score=80.50 Aligned_cols=28 Identities=29% Similarity=0.368 Sum_probs=26.5
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
++|++++|+||||||||||++.|++.++
T Consensus 3 ~~g~~i~i~G~sGsGKstl~~~l~~~~~ 30 (205)
T PRK00300 3 RRGLLIVLSGPSGAGKSTLVKALLERDP 30 (205)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhCc
Confidence 5899999999999999999999999975
|
|
| >PRK07960 fliI flagellum-specific ATP synthase; Validated | Back alignment and domain information |
|---|
Probab=98.54 E-value=5.6e-08 Score=89.48 Aligned_cols=73 Identities=22% Similarity=0.285 Sum_probs=56.1
Q ss_pred ceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCc---ceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCC
Q 035832 33 DILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTS---GSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPE 107 (245)
Q Consensus 33 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~---G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~ 107 (245)
.+++.+ |++.+|++++|+|+||+|||||+++|+|+.+|+. |.|.+.|.++.......... -....++|+|+..
T Consensus 164 raID~l-l~I~~Gqri~I~G~sG~GKTTLL~~Ia~~~~~d~iv~g~Igerg~ev~e~~~~~~~~-~~~~~tvVv~~~a 239 (455)
T PRK07960 164 RAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTQADVIVVGLIGERGREVKDFIENILGA-EGRARSVVIAAPA 239 (455)
T ss_pred eeeeec-ccccCCcEEEEECCCCCCccHHHHHHhCCCCCCEEEEEEEEECCeEHHHHHHhhcCc-CCCceEEEEEECC
Confidence 466666 9999999999999999999999999999999985 89999988774321111111 1346789999864
|
|
| >PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.51 E-value=8.9e-07 Score=86.32 Aligned_cols=42 Identities=26% Similarity=0.290 Sum_probs=35.9
Q ss_pred ceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcc
Q 035832 33 DILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSG 74 (245)
Q Consensus 33 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G 74 (245)
+++++.++.+++|++++++||||+||||++..|++.+....|
T Consensus 173 ~il~~~~~~~~~g~Vi~lVGpnGvGKTTTiaKLA~~~~~~~G 214 (767)
T PRK14723 173 PVLRDEDALLAQGGVLALVGPTGVGKTTTTAKLAARCVAREG 214 (767)
T ss_pred hhccCCCcccCCCeEEEEECCCCCcHHHHHHHHHhhHHHHcC
Confidence 357788888889999999999999999999999998754333
|
|
| >cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold | Back alignment and domain information |
|---|
Probab=98.51 E-value=5.3e-07 Score=69.06 Aligned_cols=54 Identities=17% Similarity=0.252 Sum_probs=41.4
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh------cCceEEEEecChh
Q 035832 166 KRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLK------KELTILVVSHDLK 220 (245)
Q Consensus 166 kqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~------~~~tiii~tHd~~ 220 (245)
.+......+...++.++++||.-.. ++.....+.+.+.... .+..+|+++++..
T Consensus 72 ~~~~~~~~~~~~~~~~lilDe~~~~-~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~ 131 (151)
T cd00009 72 LVRLLFELAEKAKPGVLFIDEIDSL-SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPL 131 (151)
T ss_pred hHhHHHHhhccCCCeEEEEeChhhh-hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccc
Confidence 5666667777889999999997664 6667778888888764 3478999998654
|
The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases. |
| >TIGR02546 III_secr_ATP type III secretion apparatus H+-transporting two-sector ATPase | Back alignment and domain information |
|---|
Probab=98.50 E-value=1.3e-07 Score=87.17 Aligned_cols=49 Identities=29% Similarity=0.377 Sum_probs=45.6
Q ss_pred cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCc
Q 035832 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGY 81 (245)
Q Consensus 32 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~ 81 (245)
..+++++ |.+.+|+.++|+|+||+|||||+++|+|...|+.|.+...|+
T Consensus 133 ~~~id~l-~~i~~Gq~~~I~G~sG~GKStLl~~I~~~~~~~~~vi~~iG~ 181 (422)
T TIGR02546 133 VRAIDGL-LTCGEGQRIGIFAGAGVGKSTLLGMIARGASADVNVIALIGE 181 (422)
T ss_pred ceeehhh-ccccCCCEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEcc
Confidence 4689999 999999999999999999999999999999999998888554
|
|
| >PRK10416 signal recognition particle-docking protein FtsY; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=4.6e-08 Score=86.98 Aligned_cols=78 Identities=18% Similarity=0.039 Sum_probs=53.9
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCC--CCCCCCCCCcEEEEecCCCCCCCcccHHHHHH
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPN--NSPEPLPPEKVGIVFQFPERYFVADNVLDEVI 120 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~--~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~ 120 (245)
++|++++++|||||||||++..|++.+.+..++|.+.+.|...... .......+..+.+++|... ..+..++++++.
T Consensus 112 ~~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~D~~r~~a~eql~~~a~~~~i~~~~~~~~-~dpa~~v~~~l~ 190 (318)
T PRK10416 112 KKPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAGDTFRAAAIEQLQVWGERVGVPVIAQKEG-ADPASVAFDAIQ 190 (318)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEecCccchhhHHHHHHHHHHcCceEEEeCCC-CCHHHHHHHHHH
Confidence 5799999999999999999999999999888899998777532110 0000011345888888643 333345566654
Q ss_pred h
Q 035832 121 F 121 (245)
Q Consensus 121 ~ 121 (245)
.
T Consensus 191 ~ 191 (318)
T PRK10416 191 A 191 (318)
T ss_pred H
Confidence 3
|
|
| >PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional | Back alignment and domain information |
|---|
Probab=98.49 E-value=8.4e-07 Score=80.32 Aligned_cols=38 Identities=24% Similarity=0.288 Sum_probs=33.9
Q ss_pred cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 32 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.+++++.++.+++|++++++||||+||||++..|++.+
T Consensus 124 l~~~~~~~~~~~~g~ii~lvGptGvGKTTtiakLA~~~ 161 (374)
T PRK14722 124 LPVLDSEDALMERGGVFALMGPTGVGKTTTTAKLAARC 161 (374)
T ss_pred chhhcCCCccccCCcEEEEECCCCCCHHHHHHHHHHHH
Confidence 34677888899999999999999999999999999864
|
|
| >TIGR03498 FliI_clade3 flagellar protein export ATPase FliI | Back alignment and domain information |
|---|
Probab=98.48 E-value=1.5e-07 Score=86.43 Aligned_cols=63 Identities=25% Similarity=0.242 Sum_probs=50.7
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCcc
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYN 82 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 82 (245)
++-..++..+..+ ..+++ .+|++.+|+.++|+|+||+|||||+++|+++.+|+.|.|.+.|+.
T Consensus 115 ~~R~~i~~~l~tG-i~aiD-~~~~i~~Gq~i~I~G~sG~GKTtLl~~I~~~~~~~~gvi~~iGer 177 (418)
T TIGR03498 115 MSRARVGEPLDTG-VRVID-TFLPLCRGQRLGIFAGSGVGKSTLLSMLARNTDADVVVIALVGER 177 (418)
T ss_pred hhccCcccccCCc-cEEEe-eeccccCCcEEEEECCCCCChHHHHHHHhCCCCCCEEEEEEEeee
Confidence 3344444444432 45665 699999999999999999999999999999999999998887763
|
Members of this protein family are the FliI protein of bacterial flagellum systems. This protein acts to drive protein export for flagellar biosynthesis. The most closely related family is the YscN family of bacterial type III secretion systems. This model represents one (of three) segment of the FliI family tree. These have been modeled separately in order to exclude the type III secretion ATPases more effectively. |
| >TIGR00606 rad50 rad50 | Back alignment and domain information |
|---|
Probab=98.48 E-value=2.9e-07 Score=95.74 Aligned_cols=78 Identities=17% Similarity=0.224 Sum_probs=52.1
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHH----hCCCCCC-cceEEEcCccCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLL----AGLSKPT-SGSINIRGYNNDGEPNNSPE 92 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l----~Gl~~p~-~G~i~~~g~~~~~~~~~~~~ 92 (245)
|.++|+. +|+...+ +...+.|.+ .+++|+|||||||||++.+| .|..+|. .|.+++.+.++.+..
T Consensus 6 l~i~g~r-Sf~~~~~---~~~~I~F~~-~~~~I~G~NGaGKTTil~ai~~al~G~~~~~~~g~~~i~~~~~~~~~----- 75 (1311)
T TIGR00606 6 MSILGVR-SFGIEDK---DKQIIDFFS-PLTILVGPNGAGKTTIIECLKYICTGDFPPGTKGNTFVHDPKVAQET----- 75 (1311)
T ss_pred eeeecee-cCCCccc---cceeeeccc-ceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCceEecCCCcCccH-----
Confidence 6777774 6642111 122233434 49999999999999999999 5999996 788888765543211
Q ss_pred CCCCCcEEEEecCC
Q 035832 93 PLPPEKVGIVFQFP 106 (245)
Q Consensus 93 ~~~~~~i~~v~Q~~ 106 (245)
..+..|.+.|++.
T Consensus 76 -~~~a~V~l~F~~~ 88 (1311)
T TIGR00606 76 -DVRAQIRLQFRDV 88 (1311)
T ss_pred -hhhheeEEEEEcC
Confidence 1245688888653
|
This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
| ID | Alignment Graph | Length |
Definition |
E-value | |
| Query | 245 | ||||
| 2yz2_A | 266 | Crystal Structure Of The Abc Transporter In The Cob | 1e-26 | ||
| 4hlu_A | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 2e-26 | ||
| 2pcj_A | 224 | Crystal Structure Of Abc Transporter (Aq_297) From | 7e-18 | ||
| 1z47_A | 355 | Structure Of The Atpase Subunit Cysa Of The Putativ | 1e-15 | ||
| 3gfo_A | 275 | Structure Of Cbio1 From Clostridium Perfringens: Pa | 2e-15 | ||
| 2yyz_A | 359 | Crystal Structure Of Sugar Abc Transporter, Atp-Bin | 8e-15 | ||
| 2it1_A | 362 | Structure Of Ph0203 Protein From Pyrococcus Horikos | 1e-13 | ||
| 3c41_J | 242 | Abc Protein Artp In Complex With Amp-PnpMG2+ Length | 2e-13 | ||
| 2olj_A | 263 | Abc Protein Artp In Complex With AdpMG2+ Length = 2 | 2e-13 | ||
| 1vci_A | 373 | Crystal Structure Of The Atp-binding Cassette Of Mu | 9e-13 | ||
| 1v43_A | 372 | Crystal Structure Of Atpase Subunit Of Abc Sugar Tr | 9e-13 | ||
| 1l2t_A | 235 | Dimeric Structure Of Mj0796, A Bacterial Abc Transp | 1e-12 | ||
| 1oxs_C | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 1e-12 | ||
| 4hlu_D | 268 | Structure Of The Ecfa-a' Heterodimer Bound To Adp L | 2e-12 | ||
| 1q1b_A | 381 | Crystal Structure Of E. Coli Malk In The Nucleotide | 2e-12 | ||
| 1q12_A | 381 | Crystal Structure Of The Atp-bound E. Coli Malk Len | 2e-12 | ||
| 3tif_A | 235 | Dimeric Structure Of A Post-Hydrolysis State Of The | 3e-12 | ||
| 1f3o_A | 235 | Crystal Structure Of Mj0796 Atp-Binding Cassette Le | 3e-12 | ||
| 1oxx_K | 353 | Crystal Structure Of Glcv, The Abc-Atpase Of The Gl | 4e-12 | ||
| 2r6g_A | 381 | The Crystal Structure Of The E. Coli Maltose Transp | 5e-12 | ||
| 1g29_1 | 372 | Malk Length = 372 | 5e-12 | ||
| 3b5x_A | 582 | Crystal Structure Of Msba From Vibrio Cholerae Leng | 7e-12 | ||
| 4ayw_A | 619 | Structure Of The Human Mitochondrial Abc Transporte | 1e-11 | ||
| 2onk_A | 240 | Abc Transporter Modbc In Complex With Its Binding P | 1e-11 | ||
| 4ayt_A | 595 | Structure Of The Human Mitochondrial Abc Transporte | 2e-11 | ||
| 3d31_A | 348 | Modbc From Methanosarcina Acetivorans Length = 348 | 2e-11 | ||
| 1vpl_A | 256 | Crystal Structure Of Abc Transporter Atp-binding Pr | 3e-11 | ||
| 3b5y_A | 582 | Crystal Structure Of Msba From Salmonella Typhimuri | 4e-11 | ||
| 3b5w_A | 582 | Crystal Structure Of Eschericia Coli Msba Length = | 5e-11 | ||
| 3dhw_C | 343 | Crystal Structure Of Methionine Importer Metni Leng | 7e-11 | ||
| 3tui_C | 366 | Inward Facing Conformations Of The Metni Methionine | 2e-10 | ||
| 1mt0_A | 241 | Atp-Binding Domain Of Haemolysin B From Escherichia | 3e-10 | ||
| 2ff7_A | 247 | The Abc-Atpase Of The Abc-Transporter Hlyb In The A | 3e-10 | ||
| 2pmk_A | 243 | Crystal Structures Of An Isolated Abc-Atpase In Com | 3e-10 | ||
| 2d62_A | 375 | Crystal Structure Of Multiple Sugar Binding Transpo | 3e-10 | ||
| 3b5j_A | 243 | Crystal Structures Of The S504a Mutant Of An Isolat | 6e-10 | ||
| 3fvq_A | 359 | Crystal Structure Of The Nucleotide Binding Domain | 7e-10 | ||
| 2ffb_A | 247 | The Crystal Structure Of The Hlyb-Nbd E631q Mutant | 7e-10 | ||
| 3tuj_C | 366 | Inward Facing Conformations Of The Metni Methionine | 8e-10 | ||
| 4f4c_A | 1321 | The Crystal Structure Of The Multi-Drug Transporter | 8e-10 | ||
| 3g60_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-09 | ||
| 3g5u_A | 1284 | Structure Of P-Glycoprotein Reveals A Molecular Bas | 2e-09 | ||
| 2hyd_A | 578 | Multidrug Abc Transporter Sav1866 Length = 578 | 3e-09 | ||
| 2ihy_A | 279 | Structure Of The Staphylococcus Aureus Putative Atp | 3e-09 | ||
| 1mv5_A | 243 | Crystal Structure Of Lmra Atp-Binding Domain Length | 3e-09 | ||
| 1xef_A | 241 | Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DI | 5e-09 | ||
| 2ffa_A | 247 | Crystal Structure Of Abc-Atpase H662a Of The Abc-Tr | 5e-09 | ||
| 1b0u_A | 262 | Atp-Binding Subunit Of The Histidine Permease From | 1e-08 | ||
| 2ixf_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 4e-08 | ||
| 4fwi_B | 334 | Crystal Structure Of The Nucleotide-binding Domain | 8e-08 | ||
| 2ghi_A | 260 | Crystal Structure Of Plasmodium Yoelii Multidrug Re | 2e-07 | ||
| 1g6h_A | 257 | Crystal Structure Of The Adp Conformation Of Mj1267 | 2e-07 | ||
| 1g9x_A | 257 | Characterization Of The Twinning Structure Of Mj126 | 2e-07 | ||
| 3nh6_A | 306 | Nucleotide Binding Domain Of Human Abcb6 (Apo Struc | 3e-07 | ||
| 2ixe_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 4e-07 | ||
| 2cbz_A | 237 | Structure Of The Human Multidrug Resistance Protein | 4e-07 | ||
| 2nq2_C | 253 | An Inward-Facing Conformation Of A Putative Metal-C | 5e-07 | ||
| 1gaj_A | 257 | Crystal Structure Of A Nucleotide-Free Atp-Binding | 7e-07 | ||
| 1jj7_A | 260 | Crystal Structure Of The C-Terminal Atpase Domain O | 8e-07 | ||
| 3ozx_A | 538 | Crystal Structure Of Abce1 Of Sulfolubus Solfataric | 1e-06 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 7e-06 | ||
| 3j15_B | 593 | Model Of Ribosome-Bound Archaeal Pelota And Abce1 L | 3e-04 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 8e-06 | ||
| 3bk7_A | 607 | Structure Of The Complete Abce1RNAASE-L Inhibitor P | 4e-04 | ||
| 1yqt_A | 538 | Rnase-L Inhibitor Length = 538 | 9e-06 | ||
| 2ixg_A | 271 | Crystal Structure Of The Atpase Domain Of Tap1 With | 9e-06 | ||
| 4g1u_C | 266 | X-Ray Structure Of The Bacterial Heme Transporter H | 2e-05 | ||
| 1r0z_A | 286 | Phosphorylated Cystic Fibrosis Transmembrane Conduc | 3e-05 | ||
| 1q3h_A | 286 | Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | 3e-05 | ||
| 3j16_B | 608 | Models Of Ribosome-Bound Dom34p And Rli1p And Their | 4e-05 | ||
| 3qf4_A | 587 | Crystal Structure Of A Heterodimeric Abc Transporte | 4e-05 | ||
| 2pze_A | 229 | Minimal Human Cftr First Nucleotide Binding Domain | 8e-05 | ||
| 2pzg_A | 241 | Minimal Human Cftr First Nucleotide Binding Domain | 9e-05 | ||
| 1xf9_A | 283 | Structure Of Nbd1 From Murine Cftr- F508s Mutant Le | 1e-04 | ||
| 1xfa_A | 283 | Structure Of Nbd1 From Murine Cftr- F508r Mutant Le | 2e-04 | ||
| 3si7_A | 285 | The Crystal Structure Of The Nbd1 Domain Of The Mou | 3e-04 | ||
| 1sgw_A | 214 | Putative Abc Transporter (Atp-Binding Protein) From | 4e-04 | ||
| 1xmi_A | 291 | Crystal Structure Of Human F508a Nbd1 Domain With A | 5e-04 | ||
| 2pzf_A | 228 | Minimal Human Cftr First Nucleotide Binding Domain | 7e-04 | ||
| 2pjz_A | 263 | The Crystal Structure Of Putative Cobalt Transport | 9e-04 |
| >pdb|2YZ2|A Chain A, Crystal Structure Of The Abc Transporter In The Cobalt Transport System Length = 266 | Back alignment and structure |
|
| >pdb|4HLU|A Chain A, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|2PCJ|A Chain A, Crystal Structure Of Abc Transporter (Aq_297) From Aquifex Aeolicus Vf5 Length = 224 | Back alignment and structure |
|
| >pdb|1Z47|A Chain A, Structure Of The Atpase Subunit Cysa Of The Putative Sulfate Atp-Binding Cassette (Abc) Transporter From Alicyclobacillus Acidocaldarius Length = 355 | Back alignment and structure |
|
| >pdb|3GFO|A Chain A, Structure Of Cbio1 From Clostridium Perfringens: Part Of The Abc Transporter Complex Cbionq Length = 275 | Back alignment and structure |
|
| >pdb|2YYZ|A Chain A, Crystal Structure Of Sugar Abc Transporter, Atp-Binding Protein Length = 359 | Back alignment and structure |
|
| >pdb|2IT1|A Chain A, Structure Of Ph0203 Protein From Pyrococcus Horikoshii Length = 362 | Back alignment and structure |
|
| >pdb|3C41|J Chain J, Abc Protein Artp In Complex With Amp-PnpMG2+ Length = 242 | Back alignment and structure |
|
| >pdb|2OLJ|A Chain A, Abc Protein Artp In Complex With AdpMG2+ Length = 263 | Back alignment and structure |
|
| >pdb|1VCI|A Chain A, Crystal Structure Of The Atp-binding Cassette Of Multisugar Transporter From Pyrococcus Horikoshii Ot3 Complexed With Atp Length = 373 | Back alignment and structure |
|
| >pdb|1V43|A Chain A, Crystal Structure Of Atpase Subunit Of Abc Sugar Transporter Length = 372 | Back alignment and structure |
|
| >pdb|1L2T|A Chain A, Dimeric Structure Of Mj0796, A Bacterial Abc Transporter Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1OXS|C Chain C, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|4HLU|D Chain D, Structure Of The Ecfa-a' Heterodimer Bound To Adp Length = 268 | Back alignment and structure |
|
| >pdb|1Q1B|A Chain A, Crystal Structure Of E. Coli Malk In The Nucleotide-Free Form Length = 381 | Back alignment and structure |
|
| >pdb|1Q12|A Chain A, Crystal Structure Of The Atp-bound E. Coli Malk Length = 381 | Back alignment and structure |
|
| >pdb|3TIF|A Chain A, Dimeric Structure Of A Post-Hydrolysis State Of The Atp-Binding Cassette Mj0796 Bound To Adp And Pi Length = 235 | Back alignment and structure |
|
| >pdb|1F3O|A Chain A, Crystal Structure Of Mj0796 Atp-Binding Cassette Length = 235 | Back alignment and structure |
|
| >pdb|1OXX|K Chain K, Crystal Structure Of Glcv, The Abc-Atpase Of The Glucose Abc Transporter From Sulfolobus Solfataricus Length = 353 | Back alignment and structure |
|
| >pdb|2R6G|A Chain A, The Crystal Structure Of The E. Coli Maltose Transporter Length = 381 | Back alignment and structure |
|
| >pdb|1G29|1 Chain 1, Malk Length = 372 | Back alignment and structure |
|
| >pdb|3B5X|A Chain A, Crystal Structure Of Msba From Vibrio Cholerae Length = 582 | Back alignment and structure |
|
| >pdb|4AYW|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 (plate Form) Length = 619 | Back alignment and structure |
|
| >pdb|2ONK|A Chain A, Abc Transporter Modbc In Complex With Its Binding Protein Moda Length = 240 | Back alignment and structure |
|
| >pdb|4AYT|A Chain A, Structure Of The Human Mitochondrial Abc Transporter, Abcb10 Length = 595 | Back alignment and structure |
|
| >pdb|3D31|A Chain A, Modbc From Methanosarcina Acetivorans Length = 348 | Back alignment and structure |
|
| >pdb|1VPL|A Chain A, Crystal Structure Of Abc Transporter Atp-binding Protein (tm0544) From Thermotoga Maritima At 2.10 A Resolution Length = 256 | Back alignment and structure |
|
| >pdb|3B5Y|A Chain A, Crystal Structure Of Msba From Salmonella Typhimurium With Amppnp Length = 582 | Back alignment and structure |
|
| >pdb|3B5W|A Chain A, Crystal Structure Of Eschericia Coli Msba Length = 582 | Back alignment and structure |
|
| >pdb|3DHW|C Chain C, Crystal Structure Of Methionine Importer Metni Length = 343 | Back alignment and structure |
|
| >pdb|3TUI|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Cy5 Native Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|1MT0|A Chain A, Atp-Binding Domain Of Haemolysin B From Escherichia Coli Length = 241 | Back alignment and structure |
|
| >pdb|2FF7|A Chain A, The Abc-Atpase Of The Abc-Transporter Hlyb In The Adp Bound State Length = 247 | Back alignment and structure |
|
| >pdb|2PMK|A Chain A, Crystal Structures Of An Isolated Abc-Atpase In Complex With Tnp-Adp Length = 243 | Back alignment and structure |
|
| >pdb|2D62|A Chain A, Crystal Structure Of Multiple Sugar Binding Transport Atp- Binding Protein Length = 375 | Back alignment and structure |
|
| >pdb|3B5J|A Chain A, Crystal Structures Of The S504a Mutant Of An Isolated Abc-atpase In Complex With Tnp-adp Length = 243 | Back alignment and structure |
|
| >pdb|3FVQ|A Chain A, Crystal Structure Of The Nucleotide Binding Domain Fbpc Complexed With Atp Length = 359 | Back alignment and structure |
|
| >pdb|2FFB|A Chain A, The Crystal Structure Of The Hlyb-Nbd E631q Mutant In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|3TUJ|C Chain C, Inward Facing Conformations Of The Metni Methionine Abc Transporter: Dm Crystal Form Length = 366 | Back alignment and structure |
|
| >pdb|4F4C|A Chain A, The Crystal Structure Of The Multi-Drug Transporter Length = 1321 | Back alignment and structure |
|
| >pdb|3G60|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|3G5U|A Chain A, Structure Of P-Glycoprotein Reveals A Molecular Basis For Poly-Specific Drug Binding Length = 1284 | Back alignment and structure |
|
| >pdb|2HYD|A Chain A, Multidrug Abc Transporter Sav1866 Length = 578 | Back alignment and structure |
|
| >pdb|2IHY|A Chain A, Structure Of The Staphylococcus Aureus Putative Atpase Subunit Of An Atp-Binding Cassette (Abc) Transporter Length = 279 | Back alignment and structure |
|
| >pdb|1MV5|A Chain A, Crystal Structure Of Lmra Atp-Binding Domain Length = 243 | Back alignment and structure |
|
| >pdb|1XEF|A Chain A, Crystal Structure Of The AtpMG2+ BOUND COMPOSITE DIMER OF HLYB-Nbd Length = 241 | Back alignment and structure |
|
| >pdb|2FFA|A Chain A, Crystal Structure Of Abc-Atpase H662a Of The Abc-Transporter Hlyb In Complex With Adp Length = 247 | Back alignment and structure |
|
| >pdb|1B0U|A Chain A, Atp-Binding Subunit Of The Histidine Permease From Salmonella Typhimurium Length = 262 | Back alignment and structure |
|
| >pdb|2IXF|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (D645q, Q678h Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|4FWI|B Chain B, Crystal Structure Of The Nucleotide-binding Domain Of A Dipeptide Abc Transporter Length = 334 | Back alignment and structure |
|
| >pdb|2GHI|A Chain A, Crystal Structure Of Plasmodium Yoelii Multidrug Resistance Protein 2 Length = 260 | Back alignment and structure |
|
| >pdb|1G6H|A Chain A, Crystal Structure Of The Adp Conformation Of Mj1267, An Atp- Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1G9X|A Chain A, Characterization Of The Twinning Structure Of Mj1267, An Atp-Binding Cassette Of An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|3NH6|A Chain A, Nucleotide Binding Domain Of Human Abcb6 (Apo Structure) Length = 306 | Back alignment and structure |
|
| >pdb|2IXE|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (d645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|2CBZ|A Chain A, Structure Of The Human Multidrug Resistance Protein 1 Nucleotide Binding Domain 1 Length = 237 | Back alignment and structure |
|
| >pdb|2NQ2|C Chain C, An Inward-Facing Conformation Of A Putative Metal-Chelate Type Abc Transporter. Length = 253 | Back alignment and structure |
|
| >pdb|1GAJ|A Chain A, Crystal Structure Of A Nucleotide-Free Atp-Binding Cassette From An Abc Transporter Length = 257 | Back alignment and structure |
|
| >pdb|1JJ7|A Chain A, Crystal Structure Of The C-Terminal Atpase Domain Of Human Tap1 Length = 260 | Back alignment and structure |
|
| >pdb|3OZX|A Chain A, Crystal Structure Of Abce1 Of Sulfolubus Solfataricus (-Fes Domain) Length = 538 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|3J15|B Chain B, Model Of Ribosome-Bound Archaeal Pelota And Abce1 Length = 593 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|3BK7|A Chain A, Structure Of The Complete Abce1RNAASE-L Inhibitor Protein From Pyrococcus Abysii Length = 607 | Back alignment and structure |
|
| >pdb|1YQT|A Chain A, Rnase-L Inhibitor Length = 538 | Back alignment and structure |
|
| >pdb|2IXG|A Chain A, Crystal Structure Of The Atpase Domain Of Tap1 With Atp (S621a, G622v, D645n Mutant) Length = 271 | Back alignment and structure |
|
| >pdb|4G1U|C Chain C, X-Ray Structure Of The Bacterial Heme Transporter Hmuuv From Yersinia Pestis Length = 266 | Back alignment and structure |
|
| >pdb|1R0Z|A Chain A, Phosphorylated Cystic Fibrosis Transmembrane Conductance Regulator (Cftr) Nucleotide-Binding Domain One (Nbd1) With Atp Length = 286 | Back alignment and structure |
|
| >pdb|1Q3H|A Chain A, Mouse Cftr Nbd1 With Amp.Pnp Length = 286 | Back alignment and structure |
|
| >pdb|3J16|B Chain B, Models Of Ribosome-Bound Dom34p And Rli1p And Their Ribosomal Binding Partners Length = 608 | Back alignment and structure |
|
| >pdb|3QF4|A Chain A, Crystal Structure Of A Heterodimeric Abc Transporter In Its Inward- Facing Conformation Length = 587 | Back alignment and structure |
|
| >pdb|2PZE|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer Length = 229 | Back alignment and structure |
|
| >pdb|2PZG|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Monomer Length = 241 | Back alignment and structure |
|
| >pdb|1XF9|A Chain A, Structure Of Nbd1 From Murine Cftr- F508s Mutant Length = 283 | Back alignment and structure |
|
| >pdb|1XFA|A Chain A, Structure Of Nbd1 From Murine Cftr- F508r Mutant Length = 283 | Back alignment and structure |
|
| >pdb|3SI7|A Chain A, The Crystal Structure Of The Nbd1 Domain Of The Mouse Cftr Protein, Deltaf508 Mutant Length = 285 | Back alignment and structure |
|
| >pdb|1SGW|A Chain A, Putative Abc Transporter (Atp-Binding Protein) From Pyrococcus Furiosus Pfu-867808-001 Length = 214 | Back alignment and structure |
|
| >pdb|1XMI|A Chain A, Crystal Structure Of Human F508a Nbd1 Domain With Atp Length = 291 | Back alignment and structure |
|
| >pdb|2PZF|A Chain A, Minimal Human Cftr First Nucleotide Binding Domain As A Head-To-Tail Dimer With Delta F508 Length = 228 | Back alignment and structure |
|
| >pdb|2PJZ|A Chain A, The Crystal Structure Of Putative Cobalt Transport Atp- Binding Protein (cbio-2), St1066 Length = 263 | Back alignment and structure |
|
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} Length = 266 | Back alignment and structure |
|---|
Score = 189 bits (482), Expect = 5e-60
Identities = 83/223 (37%), Positives = 126/223 (56%), Gaps = 16/223 (7%)
Query: 18 LEVRDVSYR-PPGT--QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSG 74
+EV +VS+ GT + L VS + E L+ G +GSGK+TLLQ++AGL +PTSG
Sbjct: 3 IEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSG 62
Query: 75 SINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKE 134
+ DGE E +GI FQ+PE F A+ V DEV F +
Sbjct: 63 DVLY-----DGERKKGYEIR--RNIGIAFQYPEDQFFAERVFDEVAFA-VKNFY---PDR 111
Query: 135 YLALNLQRAINWVGLDGTSL-DKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDW 193
+++A+ +VGLD S D+ P LSGG KRR+A+A +V PD+LILDEPL GLD
Sbjct: 112 DPVPLVKKAMEFVGLDFDSFKDRVPFFLSGGEKRRVAIASVIVHEPDILILDEPLVGLDR 171
Query: 194 KARADVVKLLKHLKKE-LTILVVSHDLKEMAALVDHSWRMDMG 235
+ + D++++++ K T++++SHD++ + VD ++ G
Sbjct: 172 EGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKG 214
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} Length = 275 | Back alignment and structure |
|---|
Score = 181 bits (463), Expect = 4e-57
Identities = 71/223 (31%), Positives = 113/223 (50%), Gaps = 15/223 (6%)
Query: 18 LEVRDVSYR-PPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSI 76
L+V +++Y GT L G++ ++ I G +G GK+TL Q G+ KP+SG I
Sbjct: 8 LKVEELNYNYSDGTHA--LKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRI 65
Query: 77 NIRGYNNDGEPNNSPEPLPP--EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKE 134
D + E +GIVFQ P+ + +V +V FG + E
Sbjct: 66 LFDNKPIDYSRKG----IMKLRESIGIVFQDPDNQLFSASVYQDVSFG-AVNMK-LPEDE 119
Query: 135 YLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWK 194
+ + A+ G++ DK H LS G K+R+A+A LV P +LILDEP AGLD
Sbjct: 120 -IRKRVDNALKRTGIEHL-KDKPTHCLSFGQKKRVAIAGVLVMEPKVLILDEPTAGLDPM 177
Query: 195 ARADVVKLLKHLKKE--LTILVVSHDLKEMAALVDHSWRMDMG 235
++++KLL ++KE +TI++ +HD+ + D+ + M G
Sbjct: 178 GVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEG 220
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} Length = 263 | Back alignment and structure |
|---|
Score = 149 bits (378), Expect = 2e-44
Identities = 49/229 (21%), Positives = 91/229 (39%), Gaps = 32/229 (13%)
Query: 18 LEVRDVS--YRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGS 75
+++++V G + L ++ + + ++ G +GSGKTTLL+ ++GL P SG+
Sbjct: 2 IQLKNVGITLSGKGYERFSLENINLEVNGEKVIIL-GPNGSGKTTLLRAISGL-LPYSGN 59
Query: 76 INIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFG-----WPRQSGSI 130
I I +G + + PE Y + V D V R
Sbjct: 60 IFI-----NGMEVRK---IRN-YIRYSTNLPEAYEIGVTVNDIVYLYEELKGLDRD---- 106
Query: 131 QLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAG 190
E L + L L + + LS G + ++ L P+++ LDEP
Sbjct: 107 LFLEMLKA--------LKLGEEILRRKLYKLSAGQSVLVRTSLALASQPEIVGLDEPFEN 158
Query: 191 LDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLV 239
+D R + + +K K ++V+H+L + ++ +G L
Sbjct: 159 VDAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQ 205
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} Length = 279 | Back alignment and structure |
|---|
Score = 144 bits (365), Expect = 2e-42
Identities = 59/226 (26%), Positives = 105/226 (46%), Gaps = 16/226 (7%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
+++ + G IL +S+ + + +++G +G+GKTTLL +L TSG++N
Sbjct: 22 IQLDQIGRMKQGKT--ILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVN 79
Query: 78 IRGYNNDGEPNNSPEPLPPEKVGIVFQ-FPERYFVADNVLDEVIFGWPRQSGSIQL-KEY 135
+ G ++ +G V E++ + V+D VI G SI + ++
Sbjct: 80 LFGKMPGKVGYSAETVRQ--HIGFVSHSLLEKFQEGERVIDVVISG---AFKSIGVYQDI 134
Query: 136 LALNLQRAINW---VGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLD 192
A VG+ + + LS G K+R+ +A L+ P +LILDEP AGLD
Sbjct: 135 DDEIRNEAHQLLKLVGMSAKA-QQYIGYLSTGEKQRVMIARALMGQPQVLILDEPAAGLD 193
Query: 193 WKARADVVKLLKHLKKE---LTILVVSHDLKEMAALVDHSWRMDMG 235
+ AR ++ +L L L ++ V+H ++E+ A + G
Sbjct: 194 FIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDG 239
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 136 bits (345), Expect = 3e-37
Identities = 47/206 (22%), Positives = 84/206 (40%), Gaps = 30/206 (14%)
Query: 34 ILNGVSFSLPE-KSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPE 92
+LN + + ++ G +G+GKTTL++LLAG KP G + N S
Sbjct: 367 VLNVEEGEFSDSEILVMM-GENGTGKTTLIKLLAGALKPDEGQDIPKL-------NVS-- 416
Query: 93 PLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGT 152
+ P+K+ F R + + + + Q + + + +D
Sbjct: 417 -MKPQKIAPKFPGTVRQLFFKKIRGQFL--------NPQFQT-------DVVKPLRIDD- 459
Query: 153 SLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKE--L 210
+D++ LSGG +R+A+ + L D+ ++DEP A LD + R K+++
Sbjct: 460 IIDQEVQHLSGGELQRVAIVLALGIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKK 519
Query: 211 TILVVSHDLKEMAALVDHSWRMDMGG 236
T +V HD L D +
Sbjct: 520 TAFIVEHDFIMATYLADKVIVFEGIP 545
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; NMR {Saccharomyces cerevisiae} Length = 608 | Back alignment and structure |
|---|
Score = 131 bits (331), Expect = 2e-35
Identities = 49/220 (22%), Positives = 87/220 (39%), Gaps = 18/220 (8%)
Query: 19 EVRDVSYR--PPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSI 76
V++R ++ L P + GL+ G +G GK+T L++LAG KP G
Sbjct: 79 LEAHVTHRYSANSFKLHRLPTPR---PGQVLGLV-GTNGIGKSTALKILAGKQKPNLGRF 134
Query: 77 NIRGYNNDGEPNNSPEPLPP-------EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGS 129
+ + L + + + + + + V
Sbjct: 135 DDPPEWQEIIKYFRGSELQNYFTKMLEDDIKAIIKPQYVDNIPRAIKGPVQKVGELLKLR 194
Query: 130 IQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLA 189
E +++R I + L+ L +D LSGG +R A+ + VQ D+ + DEP +
Sbjct: 195 ---MEKSPEDVKRYIKILQLE-NVLKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSS 250
Query: 190 GLDWKARADVVKLLKHLKKE-LTILVVSHDLKEMAALVDH 228
LD K R + ++++ L ++ V HDL + L D
Sbjct: 251 YLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLSDF 290
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron transport, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} Length = 359 | Back alignment and structure |
|---|
Score = 130 bits (329), Expect = 3e-36
Identities = 63/215 (29%), Positives = 96/215 (44%), Gaps = 35/215 (16%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
L + +S T V LN +S SL I G SG GKTTLL+ LAG +P SG I+
Sbjct: 5 LHIGHLSKSFQNTPV--LNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEIS 62
Query: 78 IRGYNNDGEP-NNSPEPLPPEK--VGIVFQ----FPERYFVADNVLDEVIFG-----WPR 125
+ G+ + LP + +G + Q FP V N+ +G
Sbjct: 63 L-----SGKTIFSKNTNLPVRERRLGYLVQEGVLFPHLT-VYRNIA----YGLGNGKGRT 112
Query: 126 QSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILD 185
+++ L L G+ + + PH LSGG ++R ALA L P+L++LD
Sbjct: 113 AQERQRIEAMLEL--------TGISELA-GRYPHELSGGQQQRAALARALAPDPELILLD 163
Query: 186 EPLAGLDWKARADVVKLLKHLKKEL--TILVVSHD 218
EP + LD + R + + + + + + VSHD
Sbjct: 164 EPFSALDEQLRRQIREDMIAALRANGKSAVFVSHD 198
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 129 bits (327), Expect = 6e-35
Identities = 48/213 (22%), Positives = 92/213 (43%), Gaps = 36/213 (16%)
Query: 34 ILNGVSFSLPE-KSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPE 92
L + + + G++ G +G GKTT +++LAG+ +PT G I
Sbjct: 301 RLEVEPGEIKKGEVIGIV-GPNGIGKTTFVKMLAGVEEPTEGKIEWDL------------ 347
Query: 93 PLPPEKVGIVFQFPERYFVADNVLDEVIF--GWPRQSGSIQLKEYLALNLQRAINWVGLD 150
+ ++ + + E++ + + + E L +G+
Sbjct: 348 -------TVAYKPQYIKADYEGTVYELLSKIDASKLNSNFYKTELLKP--------LGII 392
Query: 151 GTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKE- 209
D++ + LSGG +R+A+A L++ D+ +LDEP A LD + R V + ++HL ++
Sbjct: 393 D-LYDREVNELSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKN 451
Query: 210 -LTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241
T LVV HD+ + + D + G +
Sbjct: 452 EKTALVVEHDVLMIDYVSDRLMVFE--GEPGKY 482
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} Length = 538 | Back alignment and structure |
|---|
Score = 111 bits (279), Expect = 3e-28
Identities = 50/213 (23%), Positives = 92/213 (43%), Gaps = 19/213 (8%)
Query: 22 DVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP------TSGS 75
D +R + + E I G +G+GK+T +++LAG P S
Sbjct: 26 DCVHR--YGVNAFVLYRLPVVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWD 83
Query: 76 INIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEY 135
IR + E N E L ++ V + +V + + G + ++ +
Sbjct: 84 GVIRAFR-GNELQNYFEKLKNGEIRPVVKPQ---YVDLI--PKAVKG--KVIELLKKADE 135
Query: 136 LALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKA 195
L+ + + L+ L+++ LSGG +R+A+A L++ DEP + LD +
Sbjct: 136 TG-KLEEVVKALELE-NVLEREIQHLSGGELQRVAIAAALLRNATFYFFDEPSSYLDIRQ 193
Query: 196 RADVVKLLKHLKKE-LTILVVSHDLKEMAALVD 227
R + + ++ L +E ++LVV HDL + L D
Sbjct: 194 RLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSD 226
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} Length = 355 | Back alignment and structure |
|---|
Score = 124 bits (314), Expect = 4e-34
Identities = 70/214 (32%), Positives = 106/214 (49%), Gaps = 36/214 (16%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
+E V PG + GVSF + E + G SGSGKTT+L+L+AGL +PT G +
Sbjct: 15 IEFVGVEKIYPG-GARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVW 73
Query: 78 IRGYNNDGEPNNSPEPLPPEK--VGIVFQ----FPERYFVADNVLDEVIFG-----WPRQ 126
I G+ LPP+K VG+VFQ F V D V FG P+
Sbjct: 74 I-----GGKRVTD---LPPQKRNVGLVFQNYALFQHM-----TVYDNVSFGLREKRVPKD 120
Query: 127 SGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDE 186
+++E L + L+ + ++ PH LSGG ++R+ALA L P +L+ DE
Sbjct: 121 EMDARVRELLRF--------MRLESYA-NRFPHELSGGQQQRVALARALAPRPQVLLFDE 171
Query: 187 PLAGLDWKARADVVKLLKHLKKEL--TILVVSHD 218
P A +D + R ++ ++ + E+ T + V+HD
Sbjct: 172 PFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHD 205
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 Length = 256 | Back alignment and structure |
|---|
Score = 122 bits (308), Expect = 4e-34
Identities = 62/206 (30%), Positives = 94/206 (45%), Gaps = 33/206 (16%)
Query: 35 LNGVSFSLPEKS-FGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93
L G+SF + E FGLI G +G+GKTT L++++ L KP+SG + + G N EP+ +
Sbjct: 31 LKGISFEIEEGEIFGLI-GPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPHEVRK- 88
Query: 94 LPPEKVGIVFQFPERY----------FVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRA 143
+ + + Y FVA + ++ +
Sbjct: 89 ----LISYLPEEAGAYRNMQGIEYLRFVAG------FYASSSSEIEEMVERATEI----- 133
Query: 144 INWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLL 203
GL + + S G R+L +A L+ P L ILDEP +GLD +V K+L
Sbjct: 134 ---AGLGE-KIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAREVRKIL 189
Query: 204 KHLKKE-LTILVVSHDLKEMAALVDH 228
K +E LTILV SH++ E+ L D
Sbjct: 190 KQASQEGLTILVSSHNMLEVEFLCDR 215
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 127 bits (320), Expect = 9e-34
Identities = 46/205 (22%), Positives = 89/205 (43%), Gaps = 34/205 (16%)
Query: 34 ILNGVSFSLPE-KSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPE 92
L + + + G++ G +G GKTT +++LAG+ +PT G +
Sbjct: 371 KLEVEPGEIRKGEVIGIV-GPNGIGKTTFVKMLAGVEEPTEGKVEWDL------------ 417
Query: 93 PLPPEKVGIVFQFPERYFVADNVLDEVIF--GWPRQSGSIQLKEYLALNLQRAINWVGLD 150
+ ++ + + E++ + + + E L +G+
Sbjct: 418 -------TVAYKPQYIKAEYEGTVYELLSKIDSSKLNSNFYKTELLKP--------LGII 462
Query: 151 GTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKE- 209
D++ LSGG +R+A+A L++ D+ +LDEP A LD + R V + ++HL ++
Sbjct: 463 D-LYDRNVEDLSGGELQRVAIAATLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKN 521
Query: 210 -LTILVVSHDLKEMAALVDHSWRMD 233
T LVV HD+ + + D +
Sbjct: 522 EKTALVVEHDVLMIDYVSDRLIVFE 546
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* Length = 607 | Back alignment and structure |
|---|
Score = 122 bits (309), Expect = 3e-32
Identities = 46/180 (25%), Positives = 82/180 (45%), Gaps = 20/180 (11%)
Query: 48 GLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKV--GIVFQF 105
G++ G +G+GKTT +++LAG P N N + E++ G +
Sbjct: 121 GIV-GPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVIRAFRGNELQNYFERLKNGEIRPV 179
Query: 106 PERYFVADNVLDEVIFGWPRQSGSIQLKEYLAL-----NLQRAINWVGLDGTSLDKDPHS 160
+ +V + + G +++E L + + + L+ LD++ H
Sbjct: 180 VKPQYVDLL--PKAVKG--------KVRELLKKVDEVGKFEEVVKELELE-NVLDRELHQ 228
Query: 161 LSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKE-LTILVVSHDL 219
LSGG +R+A+A L++ DEP + LD + R V ++++ L E +LVV HDL
Sbjct: 229 LSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDL 288
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 125 bits (317), Expect = 2e-33
Identities = 44/206 (21%), Positives = 76/206 (36%), Gaps = 34/206 (16%)
Query: 34 ILNGVSFSLPE-KSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPE 92
L + E + G++ G +G GKTT ++L G GS+
Sbjct: 283 QLVVDNGEAKEGEIIGIL-GPNGIGKTTFARILVGEITADEGSVTPEKQI---------- 331
Query: 93 PLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRA---INWVGL 149
K +F + V +Q K+ L+ + + L
Sbjct: 332 --LSYKPQRIFPNYD-----GTV---------QQYLENASKDALSTSSWFFEEVTKRLNL 375
Query: 150 DGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKE 209
L+ + + LSGG ++L +A L + DL +LD+P + LD + R V K +K + +E
Sbjct: 376 HR-LLESNVNDLSGGELQKLYIAATLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRE 434
Query: 210 --LTILVVSHDLKEMAALVDHSWRMD 233
++ HDL + D
Sbjct: 435 RKAVTFIIDHDLSIHDYIADRIIVFK 460
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} Length = 538 | Back alignment and structure |
|---|
Score = 121 bits (306), Expect = 6e-32
Identities = 43/188 (22%), Positives = 81/188 (43%), Gaps = 18/188 (9%)
Query: 49 LIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFP-- 106
+ G++G GKTT+L++LAG P G N + ++ +++ F+
Sbjct: 29 GVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKR-----FRGKEIYNYFKELYS 83
Query: 107 ------ERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHS 160
+ + + + G + + K + + +KD +
Sbjct: 84 NELKIVHKIQYVE-YASKFLKGTVNEILT---KIDERGKKDEVKELLNMTNL-WNKDANI 138
Query: 161 LSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLK 220
LSGG +RL +A L++ D+ I D+P + LD + R ++ K ++ L K ++VV HDL
Sbjct: 139 LSGGGLQRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLI 198
Query: 221 EMAALVDH 228
+ L D
Sbjct: 199 VLDYLTDL 206
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 119 bits (301), Expect = 3e-33
Identities = 62/187 (33%), Positives = 97/187 (51%), Gaps = 33/187 (17%)
Query: 52 GRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEK--VGIVFQ----F 105
G +G+GK+ L+L+AG+ KP G + + +G PLPPE+ +G V Q F
Sbjct: 31 GPTGAGKSVFLELIAGIVKPDRGEVRL-----NGADIT---PLPPERRGIGFVPQDYALF 82
Query: 106 PERYFVADNVLDEVIFG---WPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLS 162
P +V + +G R +++E +G+ LD+ P LS
Sbjct: 83 PHL-----SVYRNIAYGLRNVERVERDRRVREMAEK--------LGIAHL-LDRKPARLS 128
Query: 163 GGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKEL--TILVVSHDLK 220
GG ++R+ALA LV P LL+LDEPL+ +D K + +++ L+ +++E IL V+HDL
Sbjct: 129 GGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLI 188
Query: 221 EMAALVD 227
E A L D
Sbjct: 189 EAAMLAD 195
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} Length = 253 | Back alignment and structure |
|---|
Score = 116 bits (294), Expect = 4e-32
Identities = 51/216 (23%), Positives = 98/216 (45%), Gaps = 27/216 (12%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
L V ++ + + ++F L + + G++G GK+TLL LL G+ +P G I
Sbjct: 5 LSVENLGFYYQAENF-LFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIE 63
Query: 78 IRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFG-WPRQS--GSIQLKE 134
+ +G V QF F A +VLD V+ G + + +
Sbjct: 64 VYQ-----------------SIGFVPQFFSSPF-AYSVLDIVLMGRSTHINTFAKPKSHD 105
Query: 135 YLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWK 194
Y +A++++ L + ++ SLSGG ++ + +A + L++LDEP + LD
Sbjct: 106 YQVA--MQALDYLNLTHLA-KREFTSLSGGQRQLILIARAIASECKLILLDEPTSALDLA 162
Query: 195 ARADVVKLLKHLKKE--LTILVVSHDLKEMAALVDH 228
+ V+ LL L + +T++ +H ++ A+ +
Sbjct: 163 NQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANK 198
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 Length = 214 | Back alignment and structure |
|---|
Score = 114 bits (287), Expect = 2e-31
Identities = 49/240 (20%), Positives = 91/240 (37%), Gaps = 52/240 (21%)
Query: 18 LEVRDVS--YRPPGTQVDILNGVSFSLPEKS-FGLIFGRSGSGKTTLLQLLAGLSKPTSG 74
LE+RD+S Y V L ++ ++ + + G +G GKTTLL+ ++ KP G
Sbjct: 11 LEIRDLSVGY---DKPV--LERITMTIEKGNVVNFH-GPNGIGKTTLLKTISTYLKPLKG 64
Query: 75 SINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERY----------FVADNVLDEVIFGWP 124
I G K+ + + VA ++G
Sbjct: 65 EIIYNGVPITKVK---------GKIFFLPEEIIVPRKISVEDYLKAVAS------LYGVK 109
Query: 125 RQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLIL 184
I A+ V + L K LS G RR+ LA L+ ++ +L
Sbjct: 110 VNKNEIM----------DALESVEV--LDLKKKLGELSQGTIRRVQLASTLLVNAEIYVL 157
Query: 185 DEPLAGLDWKARADVVKLLKHLKKE--LTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242
D+P+ +D ++ V+K + + KE + I+ +L + D + + ++++
Sbjct: 158 DDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL----SYCDVNENLHKYSTKIDKK 213
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 Length = 348 | Back alignment and structure |
|---|
Score = 116 bits (292), Expect = 5e-31
Identities = 61/211 (28%), Positives = 104/211 (49%), Gaps = 35/211 (16%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
+E+ +S + +D +S + + +I G +G+GKT L+L+AG P SG I
Sbjct: 2 IEIESLSRKWKNFSLD---NLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL 58
Query: 78 IRGYNNDGEPNNSPEPLPPEK--VGIVFQ----FPERYFVADNVLDEVIFGWPRQSGSI- 130
+ DG+ L PEK + V+Q FP NV + FG +
Sbjct: 59 L-----DGKDVTD---LSPEKHDIAFVYQNYSLFPHM-----NVKKNLEFGMRMKKIKDP 105
Query: 131 -QLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLA 189
++ + + ++ LD++P +LSGG ++R+ALA LV P +L+LDEPL+
Sbjct: 106 KRVLDTARD--------LKIEHL-LDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLS 156
Query: 190 GLDWKARADVVKLLKHLKKEL--TILVVSHD 218
LD + + + ++L L K+ T+L ++HD
Sbjct: 157 ALDPRTQENAREMLSVLHKKNKLTVLHITHD 187
|
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* Length = 235 | Back alignment and structure |
|---|
Score = 104 bits (261), Expect = 2e-27
Identities = 59/215 (27%), Positives = 107/215 (49%), Gaps = 14/215 (6%)
Query: 18 LEVRDV--SYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGS 75
+++++V +Y+ + L V+ ++ E F I G SGSGK+T+L ++ L KPT G
Sbjct: 2 VKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 76 INIRGYNNDGEPNNSPEPLPPEKVGIVFQF----PERYFVADNVLDEVIFGWPRQSGSIQ 131
+ I + ++ + +K+G VFQ P +NV +IF + +
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQFNLIP-LLTALENVELPLIFKYRGAMSGEE 120
Query: 132 LKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGL 191
++ L+ L+ + P+ LSGG ++R+A+A L P +++ D+P L
Sbjct: 121 RRKRALECLKM----AELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTWAL 176
Query: 192 DWKARADVVKLLKHLKKEL--TILVVSHDLKEMAA 224
D K +++LLK L +E T++VV+HD +A
Sbjct: 177 DSKTGEKIMQLLKKLNEEDGKTVVVVTHD-INVAR 210
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* Length = 257 | Back alignment and structure |
|---|
Score = 102 bits (258), Expect = 9e-27
Identities = 54/244 (22%), Positives = 103/244 (42%), Gaps = 38/244 (15%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKS-FGLIFGRSGSGKTTLLQLLAGLSKPTSGSI 76
L ++ + L+GVS S+ + +I G +GSGK+TL+ ++ G K G +
Sbjct: 8 LRTENIVKYFGEFKA--LDGVSISVNKGDVTLII-GPNGSGKSTLINVITGFLKADEGRV 64
Query: 77 NIRGYNNDGEPNNSPEPLPPEKV---GIV--FQFPERYF----VADNVL-------DEVI 120
+ P ++ GIV FQ P + V +N+L + +
Sbjct: 65 YFENKDITN--------KEPAELYHYGIVRTFQTP-QPLKEMTVLENLLIGEICPGESPL 115
Query: 121 FGWPRQSGSIQLKEYLALNLQRAINW---VGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ 177
+ + +E +++A + L D+ LSGG + + + L+
Sbjct: 116 NSLFYKKWIPKEEE----MVEKAFKILEFLKLSHLY-DRKAGELSGGQMKLVEIGRALMT 170
Query: 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKKE-LTILVVSHDLKEMAALVDHSWRMDMGG 236
P ++++DEP+AG+ D+ + LK + +T L++ H L + +DH + M G
Sbjct: 171 NPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQ 230
Query: 237 FLVE 240
+ E
Sbjct: 231 IIAE 234
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A Length = 224 | Back alignment and structure |
|---|
Score = 101 bits (255), Expect = 1e-26
Identities = 66/218 (30%), Positives = 103/218 (47%), Gaps = 23/218 (10%)
Query: 18 LEVRDV--SYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGS 75
L ++ R +IL G+S S+ + F I G SGSGK+TLL +L L PT G
Sbjct: 5 LRAENIKKVIR----GYEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGK 60
Query: 76 INIRGYNNDGEPNNSPEPLPPEKVGIVFQF----PERYFVADNV-LDEVIFGWPRQSGSI 130
+ + G D L K+G VFQF P +NV + + G P++
Sbjct: 61 VFLEGKEVDYTNEKELSLLRNRKLGFVFQFHYLIP-ELTALENVIVPMLKMGKPKKEAKE 119
Query: 131 QLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAG 190
+ + L+ +GL G L + P+ LSGG ++R+A+A L P LL DEP
Sbjct: 120 RGEYLLSE--------LGL-GDKLSRKPYELSGGEQQRVAIARALANEPILLFADEPTGN 170
Query: 191 LDWKARADVVKLLKHLKKE-LTILVVSHDLKEMAALVD 227
LD V+ + + + +I++V+H+ +E+A L
Sbjct: 171 LDSANTKRVMDIFLKINEGGTSIVMVTHE-RELAELTH 207
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C Length = 366 | Back alignment and structure |
|---|
Score = 100 bits (251), Expect = 5e-25
Identities = 66/235 (28%), Positives = 115/235 (48%), Gaps = 27/235 (11%)
Query: 19 EVRDVS--YRPPGTQVDILNGVSFSLPEKS-FGLIFGRSGSGKTTLLQLLAGLSKPTSGS 75
++ +++ + + LN VS +P +G+I G SG+GK+TL++ + L +PT GS
Sbjct: 26 KLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVI-GASGAGKSTLIRCVNLLERPTEGS 84
Query: 76 INIRGYNNDGEPNNSPEPLPPE--KVGIVFQ----FPERYFVADNV-LDEVIFGWPRQSG 128
+ + G S L ++G++FQ R V NV L + P+
Sbjct: 85 VLVDGQELTTL---SESELTKARRQIGMIFQHFNLLSSRT-VFGNVALPLELDNTPKDEV 140
Query: 129 SIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPL 188
++ E L+L VGL D P +LSGG K+R+A+A L P +L+ D+
Sbjct: 141 KRRVTELLSL--------VGLGDKH-DSYPSNLSGGQKQRVAIARALASNPKVLLCDQAT 191
Query: 189 AGLDWKARADVVKLLKHLKKEL--TILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241
+ LD +++LLK + + L TIL+++H++ + + D + G L+EQ
Sbjct: 192 SALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVIS-NGELIEQ 245
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C Length = 249 | Back alignment and structure |
|---|
Score = 98.0 bits (245), Expect = 6e-25
Identities = 53/231 (22%), Positives = 92/231 (39%), Gaps = 39/231 (16%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
++++DV+ L +S + + G +G+GK+TLL +AG+ GSI
Sbjct: 5 MQLQDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSGKGSIQ 57
Query: 78 IRGYNNDGEPNNSPEPLPPE----KVGIVFQFPERYFVADNVLDEVIFG-WPRQSGSIQL 132
G+P + + Q F A V + + +
Sbjct: 58 F-----AGQPLEA---WSATKLALHRAYLSQQQTPPF-ATPVWHYLTLHQHDKTRTEL-- 106
Query: 133 KEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQV-------PDLLILD 185
L + LD L + + LSGG +R+ LA ++Q+ LL+LD
Sbjct: 107 -------LNDVAGALALDDK-LGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLD 158
Query: 186 EPLAGLDWKARADVVKLLKHLKKE-LTILVVSHDLKEMAALVDHSWRMDMG 235
EP+ LD ++ + K+L L ++ L I++ SHDL +W + G
Sbjct: 159 EPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGG 209
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* Length = 353 | Back alignment and structure |
|---|
Score = 99.7 bits (249), Expect = 9e-25
Identities = 64/211 (30%), Positives = 104/211 (49%), Gaps = 24/211 (11%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
+ V++VS +V L+ V+ ++ I G SG+GKTT ++++AGL P++G +
Sbjct: 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY 63
Query: 78 IRGYNNDGEP--NNSPEPLPPEK--VGIVFQ----FPERYFVADNVLDEVIFGWPRQSGS 129
D +N +PPE +G+VFQ +P + + F S
Sbjct: 64 F-----DDRLVASNGKLIVPPEDRKIGMVFQTWALYPNL-----TAFENIAFPLTNMKMS 113
Query: 130 IQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLA 189
KE + ++ + + L+ P LSG ++R+ALA LV+ P LL+LDEP +
Sbjct: 114 ---KEEIRKRVEEVAKILDIHHV-LNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFS 169
Query: 190 GLDWKARADVVKLLKHLKKEL--TILVVSHD 218
LD + R L+K ++ L T+LVVSHD
Sbjct: 170 NLDARMRDSARALVKEVQSRLGVTLLVVSHD 200
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 Length = 262 | Back alignment and structure |
|---|
Score = 93.4 bits (233), Expect = 4e-23
Identities = 70/252 (27%), Positives = 115/252 (45%), Gaps = 46/252 (18%)
Query: 18 LEVRDV--SYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGS 75
L V D+ Y G ++L GVS I G SGSGK+T L+ + L KP+ G+
Sbjct: 7 LHVIDLHKRY---G-GHEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGA 62
Query: 76 INIRGYN--NDGEPNNSPEPLPP-------EKVGIVFQ----FPERYFVADNVLDEVIF- 121
I + G N + + + ++ +VFQ + VL+ V+
Sbjct: 63 IIVNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHM-----TVLENVMEA 117
Query: 122 -----GWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176
G + + +YLA VG+D + K P LSGG ++R+++A L
Sbjct: 118 PIQVLGLSKHDARERALKYLAK--------VGIDERAQGKYPVHLSGGQQQRVSIARALA 169
Query: 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLKKE-LTILVVSHDLKEM--AALV-DHSWRM 232
PD+L+ DEP + LD + +V+++++ L +E T++VV+H EM A V H +
Sbjct: 170 MEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTH---EMGFARHVSSHVIFL 226
Query: 233 DMGGFLVEQRIP 244
G + E+ P
Sbjct: 227 H-QGKIEEEGDP 237
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 87.4 bits (216), Expect = 6e-20
Identities = 46/204 (22%), Positives = 81/204 (39%), Gaps = 34/204 (16%)
Query: 34 ILNGVSFSLPE-KSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPE 92
+LN L + +G+ G +G GK+TL++ +A G+ + P
Sbjct: 450 LLNKTQLRLKRARRYGIC-GPNGCGKSTLMRAIAN-----------------GQVDGFPT 491
Query: 93 PLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGT 152
+ V + +VLD V + KE + L G
Sbjct: 492 Q-EECRTVYVEHDIDGTHSDTSVLDFV------FESGVGTKEAIKDKLIE----FGFTDE 540
Query: 153 SLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELT 211
+ +LSGG+K +LALA +++ D+L+LDEP LD V L+ +L +T
Sbjct: 541 MIAMPISALSGGWKMKLALARAVLRNADILLLDEPTNHLDTVN---VAWLVNYLNTCGIT 597
Query: 212 ILVVSHDLKEMAALVDHSWRMDMG 235
+ +SHD + + ++ +
Sbjct: 598 SITISHDSVFLDNVCEYIINYEGL 621
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 71.2 bits (174), Expect = 2e-14
Identities = 27/90 (30%), Positives = 43/90 (47%), Gaps = 3/90 (3%)
Query: 147 VGLDGTSLDKDP-HSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKH 205
+GLD + LSGG K +L LA Q P L++LDEP LD + + K LK
Sbjct: 887 LGLDPEIVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKE 946
Query: 206 LKKELTILVVSHDLKEMAALVDHSWRMDMG 235
+ +++++H + L + W + G
Sbjct: 947 FEG--GVIIITHSAEFTKNLTEEVWAVKDG 974
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A Length = 986 | Back alignment and structure |
|---|
Score = 50.0 bits (119), Expect = 2e-07
Identities = 29/231 (12%), Positives = 71/231 (30%), Gaps = 27/231 (11%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
++V ++ ++ PGT + ++F S + G +G+GK+TL+ +L G PTSG +
Sbjct: 672 VKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVY 731
Query: 78 IRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLA 137
++ + Q + + + R +
Sbjct: 732 TH---------------ENCRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRET--- 773
Query: 138 LNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARA 197
+ RA + + + G +R + + L G +
Sbjct: 774 --MDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFKNTYEYECSFLLGEN--IGM 829
Query: 198 DVVKLLKHLKKELTILVVSHDLKEMAALVDH-----SWRMDMGGFLVEQRI 243
+ + + + + ++ + +V + L + I
Sbjct: 830 KSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEI 880
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* Length = 263 | Back alignment and structure |
|---|
Score = 84.6 bits (210), Expect = 7e-20
Identities = 69/224 (30%), Positives = 109/224 (48%), Gaps = 26/224 (11%)
Query: 31 QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNS 90
+++L G++ + E ++ G SGSGK+T L+ L L G I I G N + N
Sbjct: 36 SLEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLKAKDTNL 95
Query: 91 PEPLPPEKVGIVFQ----FPERYFVADNVLDEVIFG--WPRQSGSIQLKEYLALNLQRAI 144
+ E+VG+VFQ FP VL+ + R+ + + L +
Sbjct: 96 NK--VREEVGMVFQRFNLFPHM-----TVLNNITLAPMKVRKWPREKAEAKAMELLDK-- 146
Query: 145 NWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLK 204
VGL P SLSGG +R+A+A L P +++ DEP + LD + +V+ ++K
Sbjct: 147 --VGL-KDKAHAYPDSLSGGQAQRVAIARALAMEPKIMLFDEPTSALDPEMVGEVLSVMK 203
Query: 205 HLKKE-LTILVVSHDLKEM--AALV-DHSWRMDMGGFLVEQRIP 244
L E +T++VV+H EM A V D MD GG+++E+ P
Sbjct: 204 QLANEGMTMVVVTH---EMGFAREVGDRVLFMD-GGYIIEEGKP 243
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 81.2 bits (201), Expect = 1e-17
Identities = 58/217 (26%), Positives = 101/217 (46%), Gaps = 34/217 (15%)
Query: 18 LEVRDVSYR-PPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSI 76
LE +++ + P +V IL G++ + + G SG GK+T +QL+ L P G +
Sbjct: 388 LEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMV 447
Query: 77 NIRGYNNDGEPNNSPEPLPP----EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQL 132
+I DG+ + + E +G+V Q P + A + + + +G R+ ++
Sbjct: 448 SI-----DGQDIRT---INVRYLREIIGVVSQEPVLF--ATTIAENIRYG--REDVTMDE 495
Query: 133 KEYLA---------LNLQRAIN-WVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLL 182
E + L + VG G LSGG K+R+A+A LV+ P +L
Sbjct: 496 IEKAVKEANAYDFIMKLPHQFDTLVGERGA-------QLSGGQKQRIAIARALVRNPKIL 548
Query: 183 ILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDL 219
+LDE + LD ++ A V L ++ T +V++H L
Sbjct: 549 LLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRL 585
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* Length = 1284 | Back alignment and structure |
|---|
Score = 74.7 bits (184), Expect = 1e-15
Identities = 60/221 (27%), Positives = 105/221 (47%), Gaps = 40/221 (18%)
Query: 18 LEVRDVSYR-PPGTQVDILNGVSFSLPE-KSFGLIFGRSGSGKTTLLQLLAGLSKPTSGS 75
++ V + P + +L G+S + + ++ L+ G SG GK+T++QLL P +GS
Sbjct: 1031 VQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALV-GSSGCGKSTVVQLLERFYDPMAGS 1089
Query: 76 INIRGYNNDGEPNNSPEPLPP----EKVGIVFQFPERYF---VADNVLDEVIFGWPRQSG 128
+ + DG+ L ++GIV Q P F +A+N+ +G +
Sbjct: 1090 VFL-----DGKEIKQ---LNVQWLRAQLGIVSQEP-ILFDCSIAENIA----YGDNSRVV 1136
Query: 129 S-IQLKEYLAL-NLQRAIN--------WVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQV 178
S ++ N+ + I+ VG GT LSGG K+R+A+A LV+
Sbjct: 1137 SYEEIVRAAKEANIHQFIDSLPDKYNTRVGDKGT-------QLSGGQKQRIAIARALVRQ 1189
Query: 179 PDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDL 219
P +L+LDE + LD ++ V + L ++ T +V++H L
Sbjct: 1190 PHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRL 1230
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} Length = 362 | Back alignment and structure |
|---|
Score = 79.9 bits (198), Expect = 1e-17
Identities = 65/216 (30%), Positives = 105/216 (48%), Gaps = 41/216 (18%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
+++ ++ + LN ++ + + F + G SGSGK+TLL +AG+ KPTSG I
Sbjct: 4 IKLENIVKKFGNFTA--LNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIY 61
Query: 78 IRGYNNDGEPNNSPEPLPPEKVGI--VFQFPERY------FVADNVLDEVIFG-----WP 124
D + LPP+ + VFQ + V N + F P
Sbjct: 62 F-----DEKDVTE---LPPKDRNVGLVFQ---NWALYPHMTVYKN----IAFPLELRKAP 106
Query: 125 RQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLIL 184
+E + ++ + +D L++ P LSGG ++R+A+A LV+ P++L+L
Sbjct: 107 --------REEIDKKVREVAKMLHIDKL-LNRYPWQLSGGQQQRVAIARALVKEPEVLLL 157
Query: 185 DEPLAGLDWKARADVVKLLKHLKKEL--TILVVSHD 218
DEPL+ LD R +V LK L+KEL T + V+HD
Sbjct: 158 DEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHD 193
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} Length = 359 | Back alignment and structure |
|---|
Score = 77.6 bits (192), Expect = 8e-17
Identities = 68/211 (32%), Positives = 104/211 (49%), Gaps = 31/211 (14%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
+ V ++ + ++GVSF + + F + G SG GKTT L +LAG+ KPTSG I
Sbjct: 4 IRVVNLKKYFGKVKA--VDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIY 61
Query: 78 IRGYNNDGEPNNSPEPLPPEKVGI--VFQFPERY------FVADNVLDEVIFGWPRQSGS 129
D N +PP+ + VFQ Y V +N + F + S
Sbjct: 62 F-----DDVLVND---IPPKYREVGMVFQ---NYALYPHMTVFEN----IAFPLRARRIS 106
Query: 130 IQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLA 189
K+ + + + +D LD+ P LSGG ++R+ALA LV+ P +L+ DEPL+
Sbjct: 107 ---KDEVEKRVVEIARKLLIDNL-LDRKPTQLSGGQQQRVALARALVKQPKVLLFDEPLS 162
Query: 190 GLDWKARADVVKLLKHLKKEL--TILVVSHD 218
LD R + +KHL++EL T + V+HD
Sbjct: 163 NLDANLRMIMRAEIKHLQQELGITSVYVTHD 193
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 Length = 240 | Back alignment and structure |
|---|
Score = 74.0 bits (183), Expect = 4e-16
Identities = 61/228 (26%), Positives = 93/228 (40%), Gaps = 69/228 (30%)
Query: 18 LEVRD--VSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGS 75
LEV+ V Y + + G+ +P + G +G+GKTT L +AGL + G
Sbjct: 7 LEVQSLHVYYGA----IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGK 62
Query: 76 INIRGYNNDGEPNNSPEPLPPEKV---GIVFQFPE--RYF----VADNV----------- 115
I G + P + GI PE R F V +N+
Sbjct: 63 IIFNGQDITN--------KPAHVINRMGIA-LVPEGRRIFPELTVYENLMMGAYNRKDKE 113
Query: 116 -----LDEV--IFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRR 168
L+ + +F PR LKE L Q GT LSGG ++
Sbjct: 114 GIKRDLEWIFSLF--PR------LKERLK---QLG-------GT--------LSGGEQQM 147
Query: 169 LALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKE-LTILVV 215
LA+ L+ P LL++DEP GL ++V ++++ + +E TIL+V
Sbjct: 148 LAIGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLV 195
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A Length = 372 | Back alignment and structure |
|---|
Score = 75.3 bits (186), Expect = 5e-16
Identities = 62/217 (28%), Positives = 101/217 (46%), Gaps = 37/217 (17%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
+ + DV + +S + + F ++ G SG GKTT L+++AGL +P+ G I
Sbjct: 4 VRLVDVWKVFGEVTA--VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIY 61
Query: 78 IRGYN-NDGEPNNSPEPLPPEKVGI--VFQFPERY------FVADNVLDEVIFG-----W 123
I D E +PP+ I VFQ Y V DN + F
Sbjct: 62 IGDKLVADPEK---GIFVPPKDRDIAMVFQ---SYALYPHMTVYDN----IAFPLKLRKV 111
Query: 124 PRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLI 183
P ++ + ++ +GL L++ P LSGG ++R+AL +V+ P + +
Sbjct: 112 P--------RQEIDQRVREVAELLGLTEL-LNRKPRELSGGQRQRVALGRAIVRKPQVFL 162
Query: 184 LDEPLAGLDWKARADVVKLLKHLKKEL--TILVVSHD 218
+DEPL+ LD K R + LK L+++L T + V+HD
Sbjct: 163 MDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHD 199
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} Length = 587 | Back alignment and structure |
|---|
Score = 75.7 bits (187), Expect = 6e-16
Identities = 52/224 (23%), Positives = 97/224 (43%), Gaps = 55/224 (24%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSL-PEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSI 76
+ +V +R +L+GV+FS+ P ++ G +GSGK+TL+ L+ L P G +
Sbjct: 342 VSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVL-GETGSGKSTLMNLIPRLIDPERGRV 400
Query: 77 -----NIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSI- 130
++R + L + V Q + VL F SG+I
Sbjct: 401 EVDELDVRTV--------KLKDL-RGHISAVPQ--------ETVL----F-----SGTIK 434
Query: 131 -------------QLKEYLALNLQRAINWV-----GLDGTSLDKDPHSLSGGYKRRLALA 172
++ E A + + +++ G D + +++ + SGG K+RL++A
Sbjct: 435 ENLKWGREDATDDEIVE--AAKIAQIHDFIISLPEGYD-SRVERGGRNFSGGQKQRLSIA 491
Query: 173 IQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVS 216
LV+ P +LILD+ + +D ++ LK K T +++
Sbjct: 492 RALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIIT 535
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* Length = 372 | Back alignment and structure |
|---|
Score = 74.6 bits (184), Expect = 1e-15
Identities = 59/211 (27%), Positives = 106/211 (50%), Gaps = 31/211 (14%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
+++ +++ R +N ++ ++ + F ++ G SG GKTT L+++AGL +PT G I
Sbjct: 12 VKLENLTKRFGNFTA--VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY 69
Query: 78 IRGYNNDGEPNNSPEPLPPEKVGI--VFQFPERY------FVADNVLDEVIFGWPRQSGS 129
LPP+ I VFQ Y V +N+ F +
Sbjct: 70 F-----GDRDVTY---LPPKDRNISMVFQ---SYAVWPHMTVYENI----AFPLKIKKFP 114
Query: 130 IQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLA 189
K+ + ++ A + ++ L++ P LSGG ++R+A+A +V PD+L++DEPL+
Sbjct: 115 ---KDEIDKRVRWAAELLQIEEL-LNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLS 170
Query: 190 GLDWKARADVVKLLKHLKKEL--TILVVSHD 218
LD K R + +K L+++L T + V+HD
Sbjct: 171 NLDAKLRVAMRAEIKKLQQKLKVTTIYVTHD 201
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* Length = 247 | Back alignment and structure |
|---|
Score = 69.8 bits (172), Expect = 2e-14
Identities = 54/215 (25%), Positives = 105/215 (48%), Gaps = 31/215 (14%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPE-KSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSI 76
+ R++ +R IL+ ++ S+ + + G++ GRSGSGK+TL +L+ P +G +
Sbjct: 8 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIV-GRSGSGKSTLTKLIQRFYIPENGQV 66
Query: 77 NIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYL 136
I G++ P L +VG+V Q + + +++D + P S +++ +
Sbjct: 67 LIDGHDLA---LADPNWL-RRQVGVVLQ--DNVLLNRSIIDNISLANPGMS----VEKVI 116
Query: 137 A-----------LNLQRAIN-WVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLIL 184
L+ N VG G LSGG ++R+A+A LV P +LI
Sbjct: 117 YAAKLAGAHDFISELREGYNTIVGEQGA-------GLSGGQRQRIAIARALVNNPKILIF 169
Query: 185 DEPLAGLDWKARADVVKLLKHLKKELTILVVSHDL 219
DE + LD+++ +++ + + K T+++++H L
Sbjct: 170 DEATSALDYESEHVIMRNMHKICKGRTVIIIAHRL 204
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 Length = 243 | Back alignment and structure |
|---|
Score = 66.3 bits (163), Expect = 2e-13
Identities = 63/216 (29%), Positives = 96/216 (44%), Gaps = 33/216 (15%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPE-KSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSI 76
L R V + ++ IL +SF G SG GK+T+ LL +PT+G I
Sbjct: 2 LSARHVDFAYDDSE-QILRDISFEAQPNSIIAFA-GPSGGGKSTIFSLLERFYQPTAGEI 59
Query: 77 NIRGYNNDGEP--NNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKE 134
I DG+P N S E ++G V Q + +A + + + +G L +
Sbjct: 60 TI-----DGQPIDNISLENW-RSQIGFVSQ--DSAIMAGTIRENLTYGLEGDYTDEDLWQ 111
Query: 135 YLALNLQRA---IN--------WVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLI 183
L+L A + VG G +SGG ++RLA+A ++ P +L+
Sbjct: 112 --VLDLAFARSFVENMPDQLNTEVGERGV-------KISGGQRQRLAIARAFLRNPKILM 162
Query: 184 LDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDL 219
LDE A LD ++ + V K L L K T LV++H L
Sbjct: 163 LDEATASLDSESESMVQKALDSLMKGRTTLVIAHRL 198
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B Length = 339 | Back alignment and structure |
|---|
Score = 66.2 bits (161), Expect = 7e-13
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Query: 147 VGLDGTSLDKDPHSLSGGYKRRLALAIQL------VQVPDLLILDEPLAGLDWKARADVV 200
+ + ++ LSGG + L LA +L LLILDEP LD + R ++
Sbjct: 235 LFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLI 294
Query: 201 KLLKHLKKEL-TILVVSHDLKEMAALVDHSWRMDMGG 236
+++ K++ +++VSHD E+ DH R+ +
Sbjct: 295 TIMERYLKKIPQVILVSHDE-ELKDAADHVIRISLEN 330
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* Length = 148 | Back alignment and structure |
|---|
Score = 62.8 bits (153), Expect = 1e-12
Identities = 27/97 (27%), Positives = 47/97 (48%), Gaps = 8/97 (8%)
Query: 147 VGLDGTSLDKDPHSLSGGYKRRLALAIQL------VQVPDLLILDEPLAGLDWKARADVV 200
+ + ++ LSGG + L LA +L LLILDEP LD + R ++
Sbjct: 44 LFVVWEGKERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLI 103
Query: 201 KLLKHLKKEL-TILVVSHDLKEMAALVDHSWRMDMGG 236
+++ K++ +++VSHD E+ DH R+ +
Sbjct: 104 TIMERYLKKIPQVILVSHDE-ELKDAADHVIRISLEN 139
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} Length = 390 | Back alignment and structure |
|---|
Score = 65.5 bits (160), Expect = 1e-12
Identities = 52/221 (23%), Positives = 86/221 (38%), Gaps = 51/221 (23%)
Query: 19 EVRDVS--YRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSI 76
V+D++ Y G + L +SFS+ + GR+GSGK+TLL L G I
Sbjct: 21 TVKDLTAKYTEGGNAI--LENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLNT-EGEI 77
Query: 77 NIRGYNNDGEPNNSPEPLPPE----KVGIVFQFP--------------ERYFVAD--NVL 116
I DG +S + E G++ Q + + V
Sbjct: 78 QI-----DGVSWDS---ITLEQWRKAFGVIPQKVFIFSGTFRKNLDPNAAHSDQEIWKVA 129
Query: 117 DEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176
DEV L+ + +++V +DG LS G+K+ + LA ++
Sbjct: 130 DEV-----------GLRSVIE-QFPGKLDFVLVDGGC------VLSHGHKQLMCLARSVL 171
Query: 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSH 217
+L+LDEP A LD + + LK + T+++
Sbjct: 172 SKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEA 212
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* Length = 271 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 1e-11
Identities = 59/224 (26%), Positives = 96/224 (42%), Gaps = 45/224 (20%)
Query: 18 LEVRDV--SY--RPPGTQVDILNGVSFSLPE-KSFGLIFGRSGSGKTTLLQLLAGLSKPT 72
++ +DV +Y P V +L G++F+L K L+ G +GSGK+T+ LL L +PT
Sbjct: 17 VKFQDVSFAYPNHP---NVQVLQGLTFTLYPGKVTALV-GPNGSGKSTVAALLQNLYQPT 72
Query: 73 SGSINIRGYNNDGEPNNSPEPLPP----EKVGIVFQFPERYFVADNVLDEVIFGWPRQSG 128
G + + DGEP +V V Q P + + + + +G R
Sbjct: 73 GGKVLL-----DGEPLVQ---YDHHYLHTQVAAVGQEPLLF--GRSFRENIAYGLTRTPT 122
Query: 129 SIQLKEYLALNLQRAIN-----------WVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ 177
++ A + VG G LSGG ++ +ALA L++
Sbjct: 123 MEEITA--VAMESGAHDFISGFPQGYDTEVGETGN-------QLSGGQRQAVALARALIR 173
Query: 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKKEL--TILVVSHDL 219
P LLILD + LD + V +LL + T+L+++ L
Sbjct: 174 KPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQL 217
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A Length = 582 | Back alignment and structure |
|---|
Score = 63.0 bits (154), Expect = 1e-11
Identities = 61/210 (29%), Positives = 106/210 (50%), Gaps = 20/210 (9%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPE-KSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSI 76
LE R+V++ PG +V L ++ +P K+ L+ GRSGSGK+T+ L+ G I
Sbjct: 342 LEFRNVTFTYPGREVPALRNINLKIPAGKTVALV-GRSGSGKSTIASLITRFYDIDEGHI 400
Query: 77 NIRGYNNDGEP--NNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKE 134
+ DG + L +V +V Q + D V + + + + Q++E
Sbjct: 401 LM-----DGHDLREYTLASL-RNQVALVSQ--NVHLFNDTVANNIAYARTEEYSREQIEE 452
Query: 135 YLALNLQRAINWV-----GLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLA 189
A + A++++ GLD T + ++ LSGG ++R+A+A L++ +LILDE +
Sbjct: 453 --AARMAYAMDFINKMDNGLD-TIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATS 509
Query: 190 GLDWKARADVVKLLKHLKKELTILVVSHDL 219
LD ++ + L L+K T LV++H L
Sbjct: 510 ALDTESERAIQAALDELQKNRTSLVIAHRL 539
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A Length = 381 | Back alignment and structure |
|---|
Score = 62.2 bits (152), Expect = 2e-11
Identities = 59/211 (27%), Positives = 94/211 (44%), Gaps = 57/211 (27%)
Query: 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSP 91
V + ++ + E F + G SG GK+TLL+++AGL TSG + I + N
Sbjct: 16 VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFI-----GEKRMND- 69
Query: 92 EPLPPEKVGI--VFQFPERY------FVADNV---LDEVIFGWPRQ---------SGSIQ 131
PP + G+ VFQ Y VA+N+ L + G ++ + +Q
Sbjct: 70 --TPPAERGVGMVFQ---SYALYPHLSVAENMSFGLK--LAGAKKEVINQRVNQVAEVLQ 122
Query: 132 LKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLAL--AIQLVQVPDLLILDEPLA 189
L LD+ P +LSGG ++R+A+ + V P + +LDEPL+
Sbjct: 123 LAHL------------------LDRKPKALSGGQRQRVAIGRTL--VAEPSVFLLDEPLS 162
Query: 190 GLDWKARADVVKLLKHLKKEL--TILVVSHD 218
LD R + + L K L T++ V+HD
Sbjct: 163 NLDAALRVQMRIEISRLHKRLGRTMIYVTHD 193
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} Length = 582 | Back alignment and structure |
|---|
Score = 61.4 bits (150), Expect = 4e-11
Identities = 62/210 (29%), Positives = 108/210 (51%), Gaps = 20/210 (9%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPE-KSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSI 76
++V+DV++ G + L+ VSFS+P+ K+ L+ GRSGSGK+T+ L SGSI
Sbjct: 342 VDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALV-GRSGSGKSTIANLFTRFYDVDSGSI 400
Query: 77 NIRGYNNDGEP--NNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKE 134
+ DG + L +V Q + D + + + + + Q+++
Sbjct: 401 CL-----DGHDVRDYKLTNLR-RHFALVSQ--NVHLFNDTIANNIAYAAEGEYTREQIEQ 452
Query: 135 YLALNLQRAINWV-----GLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLA 189
A A+ ++ GLD T + ++ SLSGG ++R+A+A L++ +LILDE +
Sbjct: 453 --AARQAHAMEFIENMPQGLD-TVIGENGTSLSGGQRQRVAIARALLRDAPVLILDEATS 509
Query: 190 GLDWKARADVVKLLKHLKKELTILVVSHDL 219
LD ++ + L L+K T+LV++H L
Sbjct: 510 ALDTESERAIQAALDELQKNKTVLVIAHRL 539
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} Length = 237 | Back alignment and structure |
|---|
Score = 59.1 bits (144), Expect = 7e-11
Identities = 48/218 (22%), Positives = 87/218 (39%), Gaps = 53/218 (24%)
Query: 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGS 75
+ + VR+ ++ + LNG++FS+PE + + G+ G GK++LL L G
Sbjct: 2 NSITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGH 61
Query: 76 INIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEY 135
+ I+G V V Q + D++ + ++FG +
Sbjct: 62 VAIKG-----------------SVAYVPQQA--WIQNDSLRENILFG----------CQL 92
Query: 136 LALNLQRAINWVGLDGTSLDKD----PH-----------SLSGGYKRRLALAIQLVQVPD 180
+ I +L D P +LSGG K+R++LA + D
Sbjct: 93 EEPYYRSVI-----QACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLARAVYSNAD 147
Query: 181 LLILDEPLAGLDWK-ARA---DVVKLLKHLKKELTILV 214
+ + D+PL+ +D + +V+ LK + ILV
Sbjct: 148 IYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILV 185
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A Length = 229 | Back alignment and structure |
|---|
Score = 57.9 bits (141), Expect = 2e-10
Identities = 43/217 (19%), Positives = 78/217 (35%), Gaps = 59/217 (27%)
Query: 19 EVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINI 78
+ +V+ +L ++F + + G +G+GKT+LL ++ G +P+ G I
Sbjct: 8 VMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKH 67
Query: 79 RGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLAL 138
G ++ QF + + + + +IFG Y
Sbjct: 68 SG-----------------RISFCSQFS--WIMPGTIKENIIFG----------VSYDEY 98
Query: 139 NLQRAINWVGLDGTSLDKD----PH-----------SLSGGYKRRLALAIQLVQVPDLLI 183
+ I L++D +LSGG + R++LA + + DL +
Sbjct: 99 RYRSVI-----KACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYL 153
Query: 184 LDEPLAGLDWKARADVVK------LLKHLKKELTILV 214
LD P LD K + K + + ILV
Sbjct: 154 LDSPFGYLD----VLTEKEIFESCVCKLMANKTRILV 186
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* Length = 371 | Back alignment and structure |
|---|
Score = 56.8 bits (137), Expect = 1e-09
Identities = 20/78 (25%), Positives = 41/78 (52%), Gaps = 9/78 (11%)
Query: 155 DKDPHSLSGGYKRRLALAIQLVQV-------PDLLILDEPLAGLDWKARADVVKLLKHLK 207
+LSGG + +AL+++L + +ILDEP LD RA + ++ + +K
Sbjct: 275 VLTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVK 334
Query: 208 KELTILVVSHD--LKEMA 223
+++++H L+++A
Sbjct: 335 SIPQMIIITHHRELEDVA 352
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* Length = 290 | Back alignment and structure |
|---|
Score = 53.5 bits (129), Expect = 1e-08
Identities = 41/206 (19%), Positives = 71/206 (34%), Gaps = 68/206 (33%)
Query: 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93
+L ++F + + G +G+GKT+LL ++ G +P+ G I G
Sbjct: 53 VLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG------------- 99
Query: 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQ---L-KEYLALNLQRAINWVGL 149
++ Q W G+I+ + Y + I
Sbjct: 100 ----RISFCSQNS----------------WI-MPGTIKENIIGVSYDEYRYRSVI----- 133
Query: 150 DGTSLDKD----PH-----------SLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWK 194
L++D +LSGG + R++LA + + DL +LD P LD
Sbjct: 134 KACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLARAVYKDADLYLLDSPFGYLD-- 191
Query: 195 ARADVVK------LLKHLKKELTILV 214
K + K + + ILV
Sbjct: 192 --VLTEKEIFESCVCKLMANKTRILV 215
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A Length = 578 | Back alignment and structure |
|---|
Score = 53.0 bits (128), Expect = 2e-08
Identities = 56/222 (25%), Positives = 96/222 (43%), Gaps = 47/222 (21%)
Query: 19 EVRDVSYRPPGTQVDILNGVSFSL-PEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
++ VS++ + IL ++ S+ ++ + G SG GK+TL+ L+ TSG I
Sbjct: 341 DIDHVSFQYNDNEAPILKDINLSIEKGETVAFV-GMSGGGKSTLINLIPRFYDVTSGQIL 399
Query: 78 IRGYNNDGEP--NNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEY 135
I DG + L ++G+V Q D ++F S ++ KE
Sbjct: 400 I-----DGHNIKDFLTGSLR-NQIGLVQQ------------DNILF-----SDTV--KEN 434
Query: 136 LALN--------LQRAINWVGLDG----------TSLDKDPHSLSGGYKRRLALAIQLVQ 177
+ L + A T + + LSGG K+RL++A +
Sbjct: 435 ILLGRPTATDEEVVEAAKMANAHDFIMNLPQGYDTEVGERGVKLSGGQKQRLSIARIFLN 494
Query: 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDL 219
P +LILDE + LD ++ + + + L L K+ T L+V+H L
Sbjct: 495 NPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRL 536
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* Length = 842 | Back alignment and structure |
|---|
Score = 48.7 bits (117), Expect = 8e-07
Identities = 35/92 (38%), Positives = 45/92 (48%), Gaps = 16/92 (17%)
Query: 147 VGLDGTSLDKDPHSLSGGYKRRLALAIQ----LVQVPDLLILDEPLAGLDWKARADVVKL 202
+GL LD+ +LS G +RL LA Q L V + +LDEP AGL AD L
Sbjct: 366 LGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGV--VYVLDEPSAGLH---PADTEAL 420
Query: 203 LKHLK--KEL--TILVVSHDLKEMAA---LVD 227
L L+ K ++ VV HDL + LVD
Sbjct: 421 LSALENLKRGGNSLFVVEHDLDVIRRADWLVD 452
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* Length = 365 | Back alignment and structure |
|---|
Score = 47.6 bits (113), Expect = 1e-06
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 9/76 (11%)
Query: 157 DPHSLSGG--YKRRLALAIQL---VQVP-DLLILDEPLAGLDWKARADVVKLLKHLKKE- 209
LSGG ++LA+ L D +DE + LD + + + +LK L++
Sbjct: 276 PARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLN 335
Query: 210 LTILVVSHD--LKEMA 223
I+ ++HD E
Sbjct: 336 KVIVFITHDREFSEAF 351
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 46.1 bits (110), Expect = 3e-06
Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 5/66 (7%)
Query: 19 EVRDV--SYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSI 76
E +V SY + L VSF++ + G SG+GK+T+L+LL +SG I
Sbjct: 55 EFENVHFSYAD---GRETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCI 111
Query: 77 NIRGYN 82
I G +
Sbjct: 112 RIDGQD 117
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* Length = 306 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 1e-05
Identities = 20/59 (33%), Positives = 34/59 (57%)
Query: 161 LSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDL 219
LSGG K+R+A+A +++ P +++LDE + LD + L + T +VV+H L
Sbjct: 191 LSGGEKQRVAIARTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRL 249
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* Length = 250 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 7e-06
Identities = 57/229 (24%), Positives = 96/229 (41%), Gaps = 56/229 (24%)
Query: 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP---- 71
S LE+RD+ G IL GV+ +P+ + G +G+GK+TL ++LAG P
Sbjct: 2 SQLEIRDLWASIDGET--ILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAG--DPEYTV 57
Query: 72 TSGSINIRGYN-NDGEPNNSPEPLPPE---KVGI--VFQFPE-------RYF--VADNVL 116
G I + G N + L P+ + G+ FQ+P F +A
Sbjct: 58 ERGEILLDGENILE---------LSPDERARKGLFLAFQYPVEVPGVTIANFLRLALQA- 107
Query: 117 DEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSL----SGGYKRR---L 169
+ + + E+ +++A+ + D + L + L SGG K+R L
Sbjct: 108 --------KLGREVGVAEFWTK-VKKALELLDWDESYLSR---YLNEGFSGGEKKRNEIL 155
Query: 170 ALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLK-KELTILVVSH 217
L + P +LDE +GLD A V + + ++ LV++H
Sbjct: 156 QLLV---LEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITH 201
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 44.5 bits (106), Expect = 1e-05
Identities = 21/59 (35%), Positives = 38/59 (64%)
Query: 161 LSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDL 219
LSGG ++R+A+A L++ P ++I DE + LD K K ++ L+K T+++++H L
Sbjct: 156 LSGGERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRL 214
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} Length = 260 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 4e-05
Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 4/67 (5%)
Query: 18 LEVRDVSYR-PPGTQVDILNGVSFSLPE-KSFGLIFGRSGSGKTTLLQLLAGLSKPTSGS 75
+E DV++ P T L ++F +P + L+ G +GSGK+T+ +LL G
Sbjct: 18 IEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALV-GHTGSGKSTIAKLLYRFYDA-EGD 75
Query: 76 INIRGYN 82
I I G N
Sbjct: 76 IKIGGKN 82
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} Length = 916 | Back alignment and structure |
|---|
Score = 44.8 bits (107), Expect = 1e-05
Identities = 36/97 (37%), Positives = 54/97 (55%), Gaps = 16/97 (16%)
Query: 147 VGLDGTSLDKDPHSLSGGYKRRLALAIQ----LVQVPDLLILDEPLAGLDWKARADVVKL 202
VGL+ +L + +LSGG +R+ LA Q L V + +LDEP GL + D +L
Sbjct: 451 VGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGV--IYVLDEPTIGLHPR---DTERL 505
Query: 203 LKHLKK--EL--TILVVSHDLKEMAALVDHSWRMDMG 235
+K LKK +L T++VV HD +E+ D +D+G
Sbjct: 506 IKTLKKLRDLGNTVIVVEHD-EEVIRNAD--HIIDIG 539
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A Length = 267 | Back alignment and structure |
|---|
Score = 44.1 bits (105), Expect = 1e-05
Identities = 61/243 (25%), Positives = 99/243 (40%), Gaps = 56/243 (23%)
Query: 4 RKKRAGGISCDYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQ 63
+G + L ++D+ IL G+S + I G +GSGK+TL
Sbjct: 7 HHHSSGLVPRGSHMLSIKDLHVSVEDKA--ILRGLSLDVHPGEVHAIMGPNGSGKSTLSA 64
Query: 64 LLAGLSKP----TSGSINIRGYN-NDGEPNNSPEPLPPE---KVGI--VFQFPE------ 107
LAG + T G++ +G + L PE GI FQ+P
Sbjct: 65 TLAG--REDYEVTGGTVEFKGKDLLA---------LSPEDRAGEGIFMAFQYPVEIPGVS 113
Query: 108 -RYF--VADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSL--- 161
++F A N + R ++ ++ L ++ I + + L + S+
Sbjct: 114 NQFFLQTALNAVRS-----YRGQETLDRFDFQDL-MEEKIALLKMPEDLLTR---SVNVG 164
Query: 162 -SGGYKRR---LALAIQLVQVPDLLILDEPLAGLD---WKARADVVKLLKHLKKELTILV 214
SGG K+R L +A V P+L ILDE +GLD K AD V L+ + + ++
Sbjct: 165 FSGGEKKRNDILQMA---VLEPELCILDESDSGLDIDALKVVADGVNSLR--DGKRSFII 219
Query: 215 VSH 217
V+H
Sbjct: 220 VTH 222
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} Length = 670 | Back alignment and structure |
|---|
Score = 42.9 bits (102), Expect = 5e-05
Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 13/80 (16%)
Query: 147 VGLDGTSLDKDPHSLSGGYKRRLALAIQ----LVQVPDLLILDEPLAGLDWKARADVVKL 202
VGLD +L + +LSGG +R+ LA Q L V L +LDEP GL + D +L
Sbjct: 189 VGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGV--LYVLDEPSIGLHQR---DNDRL 243
Query: 203 LKHLKK--EL--TILVVSHD 218
+ LK +L T++VV HD
Sbjct: 244 IATLKSMRDLGNTLIVVEHD 263
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A Length = 972 | Back alignment and structure |
|---|
Score = 41.7 bits (99), Expect = 1e-04
Identities = 32/80 (40%), Positives = 44/80 (55%), Gaps = 13/80 (16%)
Query: 147 VGLDGTSLDKDPHSLSGGYKRRLALAIQ----LVQVPDLLILDEPLAGLDWKARADVVKL 202
VGLD +L + +LSGG +R+ LA Q L V L +LDEP GL + D +L
Sbjct: 491 VGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGV--LYVLDEPSIGLHQR---DNDRL 545
Query: 203 LKHLKK--EL--TILVVSHD 218
+ LK +L T++VV HD
Sbjct: 546 IATLKSMRDLGNTLIVVEHD 565
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 41.0 bits (95), Expect = 2e-04
Identities = 39/206 (18%), Positives = 51/206 (24%), Gaps = 68/206 (33%)
Query: 21 RDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRG 80
+VS R L L LI G GSGKT +A
Sbjct: 129 YNVS-RLQ--PYLKLRQALLELRPAKNVLIDGVLGSGKTW----VAL------------- 168
Query: 81 YNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGW----PRQSGSIQLKEYL 136
+ KV F IF W S L+
Sbjct: 169 -----------DVCLSYKVQCKMDFK-------------IF-WLNLKNCNSPETVLEMLQ 203
Query: 137 ALNLQRAINWV-GLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPD-LLILDEPLAGLDWK 194
L Q NW D +S K RRL ++ + LL+L
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRL---LKSKPYENCLLVLL--------- 251
Query: 195 ARADV--VKLLKHLKKELTILVVSHD 218
+V K IL+ +
Sbjct: 252 ---NVQNAKAWNAFNLSCKILLTTRF 274
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 245 | |||
| 3tif_A | 235 | Uncharacterized ABC transporter ATP-binding prote; | 100.0 | |
| 3gfo_A | 275 | Cobalt import ATP-binding protein CBIO 1; structur | 100.0 | |
| 3tui_C | 366 | Methionine import ATP-binding protein METN; ABC-tr | 100.0 | |
| 3fvq_A | 359 | Fe(3+) IONS import ATP-binding protein FBPC; nucle | 100.0 | |
| 3rlf_A | 381 | Maltose/maltodextrin import ATP-binding protein M; | 100.0 | |
| 2pcj_A | 224 | ABC transporter, lipoprotein-releasing system ATP- | 100.0 | |
| 2olj_A | 263 | Amino acid ABC transporter; ABC domain, ATPase, hy | 100.0 | |
| 1z47_A | 355 | CYSA, putative ABC-transporter ATP-binding protein | 100.0 | |
| 4g1u_C | 266 | Hemin import ATP-binding protein HMUV; membrane tr | 100.0 | |
| 1ji0_A | 240 | ABC transporter; ATP binding protein, structural g | 100.0 | |
| 1g6h_A | 257 | High-affinity branched-chain amino acid transport | 100.0 | |
| 2yyz_A | 359 | Sugar ABC transporter, ATP-binding protein; sugar | 100.0 | |
| 1b0u_A | 262 | Histidine permease; ABC transporter, transport pro | 100.0 | |
| 2it1_A | 362 | 362AA long hypothetical maltose/maltodextrin trans | 100.0 | |
| 1v43_A | 372 | Sugar-binding transport ATP-binding protein; ATPas | 100.0 | |
| 1vpl_A | 256 | ABC transporter, ATP-binding protein; TM0544, stru | 100.0 | |
| 1oxx_K | 353 | GLCV, glucose, ABC transporter, ATP binding protei | 100.0 | |
| 1g29_1 | 372 | MALK, maltose transport protein MALK; ATPase, acti | 100.0 | |
| 2onk_A | 240 | Molybdate/tungstate ABC transporter, ATP-binding p | 100.0 | |
| 3d31_A | 348 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| 2yz2_A | 266 | Putative ABC transporter ATP-binding protein TM_0; | 100.0 | |
| 2ihy_A | 279 | ABC transporter, ATP-binding protein; ATPase, ABC | 100.0 | |
| 2ixe_A | 271 | Antigen peptide transporter 1; ABC ATPase, hydrola | 100.0 | |
| 2ff7_A | 247 | Alpha-hemolysin translocation ATP-binding protein | 100.0 | |
| 3nh6_A | 306 | ATP-binding cassette SUB-family B member 6, mitoc; | 100.0 | |
| 2nq2_C | 253 | Hypothetical ABC transporter ATP-binding protein H | 100.0 | |
| 2d2e_A | 250 | SUFC protein; ABC-ATPase, SUF protein, 310-helix, | 100.0 | |
| 2zu0_C | 267 | Probable ATP-dependent transporter SUFC; iron-sulf | 100.0 | |
| 1mv5_A | 243 | LMRA, multidrug resistance ABC transporter ATP-bin | 100.0 | |
| 2qi9_C | 249 | Vitamin B12 import ATP-binding protein BTUD; inner | 100.0 | |
| 2ghi_A | 260 | Transport protein; multidrug resistance protein, M | 100.0 | |
| 1sgw_A | 214 | Putative ABC transporter; structural genomics, P p | 100.0 | |
| 2pjz_A | 263 | Hypothetical protein ST1066; ATP binding protein, | 100.0 | |
| 2cbz_A | 237 | Multidrug resistance-associated protein 1; ABC pro | 100.0 | |
| 2pze_A | 229 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3gd7_A | 390 | Fusion complex of cystic fibrosis transmembrane co | 100.0 | |
| 3qf4_A | 587 | ABC transporter, ATP-binding protein; multidrug tr | 100.0 | |
| 4a82_A | 578 | Cystic fibrosis transmembrane conductance regulat; | 100.0 | |
| 3b5x_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 3b60_A | 582 | Lipid A export ATP-binding/permease protein MSBA; | 100.0 | |
| 2yl4_A | 595 | ATP-binding cassette SUB-family B member 10, mitoc | 100.0 | |
| 3qf4_B | 598 | Uncharacterized ABC transporter ATP-binding prote | 100.0 | |
| 2bbs_A | 290 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 4f4c_A | 1321 | Multidrug resistance protein PGP-1; ABC transporte | 100.0 | |
| 3g5u_A | 1284 | MCG1178, multidrug resistance protein 1A; P-glycop | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3bk7_A | 607 | ABC transporter ATP-binding protein; ABC ATPase, i | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 1yqt_A | 538 | RNAse L inhibitor; ATP-binding cassette, ribosome | 100.0 | |
| 2iw3_A | 986 | Elongation factor 3A; acetylation, ATP-binding, pr | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 3ozx_A | 538 | RNAse L inhibitor; ATP binding cassette protein, h | 100.0 | |
| 3j16_B | 608 | RLI1P; ribosome recycling, translation, eukarya, r | 100.0 | |
| 3ux8_A | 670 | Excinuclease ABC, A subunit; UVRA, nucleotide exci | 100.0 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 100.0 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 100.0 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 100.0 | |
| 2npi_A | 460 | Protein CLP1; CLP1-PCF11 complex, ATP binding, ter | 100.0 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 100.0 | |
| 4aby_A | 415 | DNA repair protein RECN; hydrolase, double strand | 100.0 | |
| 3qf7_A | 365 | RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1. | 100.0 | |
| 4gp7_A | 171 | Metallophosphoesterase; polynucleotide kinase phos | 99.97 | |
| 3b85_A | 208 | Phosphate starvation-inducible protein; PHOH2, ATP | 99.97 | |
| 1e69_A | 322 | Chromosome segregation SMC protein; structural mai | 99.97 | |
| 1tq4_A | 413 | IIGP1, interferon-inducible GTPase; interferon gam | 99.97 | |
| 1ye8_A | 178 | Protein THEP1, hypothetical UPF0334 kinase-like pr | 99.96 | |
| 1znw_A | 207 | Guanylate kinase, GMP kinase; ATP:GMP-phosphotrans | 99.96 | |
| 3b9q_A | 302 | Chloroplast SRP receptor homolog, alpha subunit CP | 99.95 | |
| 2v9p_A | 305 | Replication protein E1; AAA+ molecular motor, DNA | 99.95 | |
| 2dpy_A | 438 | FLII, flagellum-specific ATP synthase; beta barrel | 99.94 | |
| 1z6g_A | 218 | Guanylate kinase; structural genomics, SGC, struct | 99.94 | |
| 2og2_A | 359 | Putative signal recognition particle receptor; nuc | 99.94 | |
| 2pt7_A | 330 | CAG-ALFA; ATPase, protein-protein complex, type IV | 99.94 | |
| 3sop_A | 270 | Neuronal-specific septin-3; hydrolase; HET: GDP; 2 | 99.93 | |
| 3aez_A | 312 | Pantothenate kinase; transferase, homodimer, COA b | 99.93 | |
| 2o8b_B | 1022 | DNA mismatch repair protein MSH6; DNA damage respo | 99.93 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.93 | |
| 2o5v_A | 359 | DNA replication and repair protein RECF; ABC ATPas | 99.92 | |
| 2obl_A | 347 | ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O | 99.92 | |
| 3qkt_A | 339 | DNA double-strand break repair RAD50 ATPase; RECA- | 99.92 | |
| 4ad8_A | 517 | DNA repair protein RECN; DNA binding protein, ATPa | 99.92 | |
| 1cr0_A | 296 | DNA primase/helicase; RECA-type protein fold, tran | 99.92 | |
| 1tf7_A | 525 | KAIC; homohexamer, hexamer, circadian clock protei | 99.92 | |
| 3pih_A | 916 | Uvrabc system protein A; hydrolase, ABC ATPase, DN | 99.91 | |
| 2eyu_A | 261 | Twitching motility protein PILT; pilus retraction | 99.9 | |
| 2ehv_A | 251 | Hypothetical protein PH0186; KAIC, RECA ATPase, un | 99.9 | |
| 2jeo_A | 245 | Uridine-cytidine kinase 1; UCK, transferase, ATP-b | 99.9 | |
| 2r6f_A | 972 | Excinuclease ABC subunit A; UVRA, nucleotide excis | 99.9 | |
| 1f2t_B | 148 | RAD50 ABC-ATPase; DNA double-strand break repair, | 99.89 | |
| 3thx_A | 934 | DNA mismatch repair protein MSH2; ABC family ATPas | 99.89 | |
| 2ygr_A | 993 | Uvrabc system protein A; hydrolase, nucleotide exc | 99.88 | |
| 1w1w_A | 430 | Structural maintenance of chromosome 1; cohesin, c | 99.88 | |
| 1ewq_A | 765 | DNA mismatch repair protein MUTS; multiple domains | 99.88 | |
| 4a74_A | 231 | DNA repair and recombination protein RADA; hydrola | 99.88 | |
| 3thx_B | 918 | DNA mismatch repair protein MSH3; ABC family ATPas | 99.87 | |
| 3szr_A | 608 | Interferon-induced GTP-binding protein MX1; interf | 99.87 | |
| 2qnr_A | 301 | Septin-2, protein NEDD5; structural genomics conso | 99.87 | |
| 2i3b_A | 189 | HCR-ntpase, human cancer-related ntpase; AAA, ross | 99.87 | |
| 1rj9_A | 304 | FTSY, signal recognition protein; SRP-GTPase domai | 99.86 | |
| 3asz_A | 211 | Uridine kinase; cytidine phosphorylation, transfer | 99.85 | |
| 2vf7_A | 842 | UVRA2, excinuclease ABC, subunit A.; DNA-binding p | 99.85 | |
| 1pui_A | 210 | ENGB, probable GTP-binding protein ENGB; structura | 99.85 | |
| 1wb9_A | 800 | DNA mismatch repair protein MUTS; DNA-binding, ATP | 99.84 | |
| 2w0m_A | 235 | SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus | 99.83 | |
| 3jvv_A | 356 | Twitching mobility protein; hexameric P-loop ATPas | 99.83 | |
| 1pzn_A | 349 | RAD51, DNA repair and recombination protein RAD51, | 99.83 | |
| 2qag_C | 418 | Septin-7; cell cycle, cell division, GTP-binding, | 99.82 | |
| 1nlf_A | 279 | Regulatory protein REPA; replicative DNA helicase | 99.81 | |
| 3kta_B | 173 | Chromosome segregation protein SMC; structural mai | 99.81 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 99.79 | |
| 1s96_A | 219 | Guanylate kinase, GMP kinase; E.coli, dimer, SAD, | 99.78 | |
| 2qag_B | 427 | Septin-6, protein NEDD5; cell cycle, cell division | 99.77 | |
| 2gza_A | 361 | Type IV secretion system protein VIRB11; ATPase, h | 99.77 | |
| 1zp6_A | 191 | Hypothetical protein ATU3015; alpha-beta protein., | 99.77 | |
| 2ewv_A | 372 | Twitching motility protein PILT; pilus retraction | 99.76 | |
| 2qm8_A | 337 | GTPase/ATPase; G protein, G3E, metallochaperone, c | 99.75 | |
| 1nij_A | 318 | Hypothetical protein YJIA; structural genomics, P- | 99.74 | |
| 2cvh_A | 220 | DNA repair and recombination protein RADB; filamen | 99.73 | |
| 2bdt_A | 189 | BH3686; alpha-beta protein, structural genomics, P | 99.73 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 99.72 | |
| 2rcn_A | 358 | Probable GTPase ENGC; YJEQ, circularly permuted, G | 99.71 | |
| 2bbw_A | 246 | Adenylate kinase 4, AK4; nucleotide kinase, nucleo | 99.7 | |
| 3e70_C | 328 | DPA, signal recognition particle receptor; FTSY, S | 99.7 | |
| 1htw_A | 158 | HI0065; nucleotide-binding fold, structural genomi | 99.69 | |
| 1n0w_A | 243 | DNA repair protein RAD51 homolog 1; DNA repair, ho | 99.68 | |
| 1p9r_A | 418 | General secretion pathway protein E; bacterial typ | 99.68 | |
| 2yhs_A | 503 | FTSY, cell division protein FTSY; cell cycle, prot | 99.67 | |
| 1sxj_E | 354 | Activator 1 40 kDa subunit; clamp loader, processi | 99.64 | |
| 2oap_1 | 511 | GSPE-2, type II secretion system protein; hexameri | 99.64 | |
| 3ec2_A | 180 | DNA replication protein DNAC; helicase loader, rep | 99.62 | |
| 2yv5_A | 302 | YJEQ protein; hydrolase, GTPase, permutation, stru | 99.62 | |
| 1udx_A | 416 | The GTP-binding protein OBG; TGS domain, riken str | 99.59 | |
| 1u0l_A | 301 | Probable GTPase ENGC; permutation, OB-fold, zinc-f | 99.59 | |
| 2kjq_A | 149 | DNAA-related protein; solution structure, NESG, st | 99.58 | |
| 2f1r_A | 171 | Molybdopterin-guanine dinucleotide biosynthesis pr | 99.57 | |
| 1odf_A | 290 | YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser | 99.55 | |
| 3lda_A | 400 | DNA repair protein RAD51; DNA binding protein, ATP | 99.54 | |
| 2x8a_A | 274 | Nuclear valosin-containing protein-like; nuclear p | 99.51 | |
| 1sq5_A | 308 | Pantothenate kinase; P-loop, transferase; HET: PAU | 99.5 | |
| 1lvg_A | 198 | Guanylate kinase, GMP kinase; transferase; HET: AD | 99.5 | |
| 1in4_A | 334 | RUVB, holliday junction DNA helicase RUVB; AAA+-cl | 99.49 | |
| 3c8u_A | 208 | Fructokinase; YP_612366.1, putative fructose trans | 99.49 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 99.47 | |
| 1t9h_A | 307 | YLOQ, probable GTPase ENGC; N-terminal beta-barrel | 99.42 | |
| 1ni3_A | 392 | YCHF GTPase, YCHF GTP-binding protein; structural | 99.4 | |
| 1ls1_A | 295 | Signal recognition particle protein; FFH, SRP54, S | 99.39 | |
| 2px0_A | 296 | Flagellar biosynthesis protein FLHF; SRP GTPase, f | 99.39 | |
| 1vma_A | 306 | Cell division protein FTSY; TM0570, structural gen | 99.39 | |
| 1qhl_A | 227 | Protein (cell division protein MUKB); SMC, chromos | 99.34 | |
| 3tr0_A | 205 | Guanylate kinase, GMP kinase; purines, pyrimidines | 99.32 | |
| 1iy2_A | 278 | ATP-dependent metalloprotease FTSH; AAA domain fol | 99.28 | |
| 2ius_A | 512 | DNA translocase FTSK; nucleotide-binding, chromoso | 99.28 | |
| 1ixz_A | 254 | ATP-dependent metalloprotease FTSH; AAA domain fol | 99.27 | |
| 3k1j_A | 604 | LON protease, ATP-dependent protease LON; ATP-bind | 99.24 | |
| 2dr3_A | 247 | UPF0273 protein PH0284; RECA superfamily ATPase, h | 99.24 | |
| 2r6a_A | 454 | DNAB helicase, replicative helicase; replication, | 99.21 | |
| 1oix_A | 191 | RAS-related protein RAB-11A; small G protein, intr | 99.2 | |
| 2zr9_A | 349 | Protein RECA, recombinase A; recombination, RECA m | 99.18 | |
| 3lnc_A | 231 | Guanylate kinase, GMP kinase; ALS collaborative cr | 99.16 | |
| 3kta_A | 182 | Chromosome segregation protein SMC; structural mai | 99.11 | |
| 2qtf_A | 364 | Protein HFLX, GTP-binding protein; beta-alpha-barr | 99.05 | |
| 3nwj_A | 250 | ATSK2; P loop, shikimate, nucleoside monophosphate | 99.03 | |
| 1svm_A | 377 | Large T antigen; AAA+ fold, viral protein; HET: AT | 99.01 | |
| 2f9l_A | 199 | RAB11B, member RAS oncogene family; RAB11B GTPase, | 98.97 | |
| 2dhr_A | 499 | FTSH; AAA+ protein, hexameric Zn metalloprotease, | 98.94 | |
| 2j41_A | 207 | Guanylate kinase; GMP, GMK, transferase, ATP-bindi | 98.93 | |
| 2xau_A | 773 | PRE-mRNA-splicing factor ATP-dependent RNA helica; | 98.91 | |
| 3a00_A | 186 | Guanylate kinase, GMP kinase; domain movement, dim | 98.88 | |
| 2e87_A | 357 | Hypothetical protein PH1320; GTP-binding, GTPase, | 98.87 | |
| 3hr8_A | 356 | Protein RECA; alpha and beta proteins (A/B, A+B), | 98.86 | |
| 3uie_A | 200 | Adenylyl-sulfate kinase 1, chloroplastic; rossmann | 98.86 | |
| 1jjv_A | 206 | Dephospho-COA kinase; P-loop nucleotide-binding fo | 98.84 | |
| 4e22_A | 252 | Cytidylate kinase; P-loop, CMP/ATP binding, transf | 98.84 | |
| 3t34_A | 360 | Dynamin-related protein 1A, linker, dynamin-relat | 98.83 | |
| 2ce7_A | 476 | Cell division protein FTSH; metalloprotease; HET: | 98.82 | |
| 4eun_A | 200 | Thermoresistant glucokinase; putative sugar kinase | 98.74 | |
| 1zu4_A | 320 | FTSY; GTPase, signal recognition particle, SRP, re | 98.73 | |
| 1fnn_A | 389 | CDC6P, cell division control protein 6; ORC1, AAA | 98.68 | |
| 3vaa_A | 199 | Shikimate kinase, SK; structural genomics, center | 98.66 | |
| 1kgd_A | 180 | CASK, peripheral plasma membrane CASK; maguk, guan | 98.65 | |
| 2vp4_A | 230 | Deoxynucleoside kinase; ATP-binding, DNA synthesis | 98.61 | |
| 1rz3_A | 201 | Hypothetical protein rbstp0775; MCSG, structural g | 98.58 | |
| 4a1f_A | 338 | DNAB helicase, replicative DNA helicase; hydrolase | 98.55 | |
| 3ney_A | 197 | 55 kDa erythrocyte membrane protein; structural ge | 98.52 | |
| 2dy1_A | 665 | Elongation factor G; translocation, GTP complex, s | 98.52 | |
| 3tqc_A | 321 | Pantothenate kinase; biosynthesis of cofactors, pr | 98.51 | |
| 1ega_A | 301 | Protein (GTP-binding protein ERA); GTPase, RNA-bin | 98.51 | |
| 3tau_A | 208 | Guanylate kinase, GMP kinase; structural genomics, | 98.5 | |
| 1knq_A | 175 | Gluconate kinase; ALFA/beta structure, transferase | 98.5 | |
| 3cr8_A | 552 | Sulfate adenylyltranferase, adenylylsulfate kinase | 98.49 | |
| 3kl4_A | 433 | SRP54, signal recognition 54 kDa protein; signal r | 98.47 | |
| 3bh0_A | 315 | DNAB-like replicative helicase; ATPase, replicatio | 98.31 | |
| 2p67_A | 341 | LAO/AO transport system kinase; ARGK, structural G | 98.29 | |
| 1kag_A | 173 | SKI, shikimate kinase I; transferase, structural g | 98.28 | |
| 1v5w_A | 343 | DMC1, meiotic recombination protein DMC1/LIM15 hom | 98.26 | |
| 1f2t_A | 149 | RAD50 ABC-ATPase; DNA double-strand break repair, | 98.26 | |
| 2qby_A | 386 | CDC6 homolog 1, cell division control protein 6 ho | 98.24 | |
| 3m6a_A | 543 | ATP-dependent protease LA 1; alpha, beta, ATP-bind | 98.21 | |
| 1cke_A | 227 | CK, MSSA, protein (cytidine monophosphate kinase); | 98.2 | |
| 3ice_A | 422 | Transcription termination factor RHO; transcriptio | 98.19 | |
| 3b9p_A | 297 | CG5977-PA, isoform A; AAA ATPase, ATP-binding, nuc | 98.18 | |
| 2pez_A | 179 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 98.17 | |
| 2z43_A | 324 | DNA repair and recombination protein RADA; archaea | 98.16 | |
| 2www_A | 349 | Methylmalonic aciduria type A protein, mitochondri | 98.16 | |
| 2qt1_A | 207 | Nicotinamide riboside kinase 1; non-protein kinase | 98.16 | |
| 4eaq_A | 229 | DTMP kinase, thymidylate kinase; structural genomi | 98.15 | |
| 2ffh_A | 425 | Protein (FFH); SRP54, signal recognition particle, | 98.04 | |
| 1m7g_A | 211 | Adenylylsulfate kinase; APS kinase, transferase, s | 98.04 | |
| 2z4s_A | 440 | Chromosomal replication initiator protein DNAA; AA | 98.03 | |
| 3qks_A | 203 | DNA double-strand break repair RAD50 ATPase; RECA- | 98.01 | |
| 1f6b_A | 198 | SAR1; gtpases, N-terminal helix, Mg-containing com | 97.97 | |
| 1j8m_F | 297 | SRP54, signal recognition 54 kDa protein; signalin | 97.94 | |
| 2q6t_A | 444 | DNAB replication FORK helicase; hydrolase; 2.90A { | 97.93 | |
| 1mky_A | 439 | Probable GTP-binding protein ENGA; GTPase, DER, KH | 97.92 | |
| 3llm_A | 235 | ATP-dependent RNA helicase A; alpha-beta-alpha, st | 97.91 | |
| 2gj8_A | 172 | MNME, tRNA modification GTPase TRME; G-domain dime | 97.91 | |
| 2qag_A | 361 | Septin-2, protein NEDD5; cell cycle, cell division | 97.91 | |
| 1y63_A | 184 | LMAJ004144AAA protein; structural genomics, protei | 97.89 | |
| 2yvu_A | 186 | Probable adenylyl-sulfate kinase; transferase, str | 97.87 | |
| 1m2o_B | 190 | GTP-binding protein SAR1, GTP binding protein; zin | 97.86 | |
| 2qor_A | 204 | Guanylate kinase; phosphotransferase, purine metab | 97.83 | |
| 3auy_A | 371 | DNA double-strand break repair RAD50 ATPase; DNA r | 97.82 | |
| 1u94_A | 356 | RECA protein, recombinase A; homologous recombinat | 97.78 | |
| 2ohf_A | 396 | Protein OLA1, GTP-binding protein 9; ATPase, GTPas | 97.77 | |
| 2if2_A | 204 | Dephospho-COA kinase; alpha-beta protein, structur | 97.77 | |
| 2wji_A | 165 | Ferrous iron transport protein B homolog; membrane | 97.75 | |
| 1sxj_C | 340 | Activator 1 40 kDa subunit; clamp loader, processi | 97.75 | |
| 2wjg_A | 188 | FEOB, ferrous iron transport protein B homolog; me | 97.72 | |
| 3t61_A | 202 | Gluconokinase; PSI-biology, structural genomics, p | 97.71 | |
| 1njg_A | 250 | DNA polymerase III subunit gamma; rossman-like fol | 97.7 | |
| 2zej_A | 184 | Dardarin, leucine-rich repeat kinase 2; parkinson' | 97.67 | |
| 2ga8_A | 359 | Hypothetical 39.9 kDa protein; YFR007W, YFH7, unkn | 97.66 | |
| 1q3t_A | 236 | Cytidylate kinase; nucleotide monophosphate kinase | 97.61 | |
| 2p5t_B | 253 | PEZT; postsegregational killing system, phosphoryl | 97.6 | |
| 1np6_A | 174 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.59 | |
| 3cm0_A | 186 | Adenylate kinase; ATP-binding, cytoplasm, nucleoti | 97.59 | |
| 4ag6_A | 392 | VIRB4 ATPase, type IV secretory pathway VIRB4 comp | 97.53 | |
| 3r20_A | 233 | Cytidylate kinase; structural genomics, seattle st | 97.52 | |
| 1lv7_A | 257 | FTSH; alpha/beta domain, four helix bundle, hydrol | 97.48 | |
| 1qhx_A | 178 | CPT, protein (chloramphenicol phosphotransferase); | 97.48 | |
| 3kb2_A | 173 | SPBC2 prophage-derived uncharacterized protein YOR | 97.46 | |
| 3lxx_A | 239 | GTPase IMAP family member 4; structural genomics c | 97.45 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.42 | |
| 1kht_A | 192 | Adenylate kinase; phosphotransferase, signaling pr | 97.38 | |
| 3dm5_A | 443 | SRP54, signal recognition 54 kDa protein; protein- | 97.37 | |
| 2rhm_A | 193 | Putative kinase; P-loop containing nucleoside trip | 97.35 | |
| 3lw7_A | 179 | Adenylate kinase related protein (ADKA-like); AMP, | 97.33 | |
| 3iij_A | 180 | Coilin-interacting nuclear ATPase protein; alpha a | 97.33 | |
| 1vht_A | 218 | Dephospho-COA kinase; structural genomics, transfe | 97.32 | |
| 1ex7_A | 186 | Guanylate kinase; substrate-induced FIT, domain mo | 97.27 | |
| 2v54_A | 204 | DTMP kinase, thymidylate kinase; nucleotide biosyn | 97.27 | |
| 1gtv_A | 214 | TMK, thymidylate kinase; transferase, transferase | 97.26 | |
| 2jaq_A | 205 | Deoxyguanosine kinase; transferase, deoxyribonucle | 97.26 | |
| 2ze6_A | 253 | Isopentenyl transferase; crown GALL tumor, cytokin | 97.26 | |
| 1via_A | 175 | Shikimate kinase; structural genomics, transferase | 97.25 | |
| 3trf_A | 185 | Shikimate kinase, SK; amino acid biosynthesis, tra | 97.25 | |
| 1uf9_A | 203 | TT1252 protein; P-loop, nucleotide binding domain, | 97.24 | |
| 3ihw_A | 184 | Centg3; RAS, centaurin, GTPase, structural genomic | 97.22 | |
| 1ly1_A | 181 | Polynucleotide kinase; PNK, phosphatase, transfera | 97.21 | |
| 3cf0_A | 301 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 97.21 | |
| 1nn5_A | 215 | Similar to deoxythymidylate kinase (thymidylate K; | 97.17 | |
| 1gvn_B | 287 | Zeta; postsegregational killing system, plasmid; 1 | 97.17 | |
| 2c95_A | 196 | Adenylate kinase 1; transferase, AP4A, nucleotide | 97.17 | |
| 2plr_A | 213 | DTMP kinase, probable thymidylate kinase; TMP-bind | 97.17 | |
| 1jal_A | 363 | YCHF protein; nucleotide-binding fold, structural | 97.16 | |
| 2wwf_A | 212 | Thymidilate kinase, putative; transferase, malaria | 97.15 | |
| 1q57_A | 503 | DNA primase/helicase; dntpase, DNA replication, tr | 97.14 | |
| 3k53_A | 271 | Ferrous iron transport protein B; GTPase fold, hel | 97.13 | |
| 1tev_A | 196 | UMP-CMP kinase; ploop, NMP binding region, LID reg | 97.09 | |
| 1nks_A | 194 | Adenylate kinase; thermophilic, transferase; HET: | 97.07 | |
| 2bwj_A | 199 | Adenylate kinase 5; phosphoryl transfer reaction, | 97.06 | |
| 4fcw_A | 311 | Chaperone protein CLPB; AAA domain; HET: ADP; 2.35 | 97.04 | |
| 2z0h_A | 197 | DTMP kinase, thymidylate kinase; ATP-binding, nucl | 97.02 | |
| 3ake_A | 208 | Cytidylate kinase; CMP kinase, CMP complex, open c | 97.01 | |
| 2vli_A | 183 | Antibiotic resistance protein; transferase, tunica | 97.01 | |
| 1xjc_A | 169 | MOBB protein homolog; structural genomics, midwest | 97.0 | |
| 1aky_A | 220 | Adenylate kinase; ATP:AMP phosphotransferase, myok | 96.94 | |
| 3b1v_A | 272 | Ferrous iron uptake transporter protein B; G prote | 96.94 | |
| 1zd8_A | 227 | GTP:AMP phosphotransferase mitochondrial; ATP:AMP | 96.93 | |
| 3q72_A | 166 | GTP-binding protein RAD; G-domain, CAV2 beta, sign | 96.92 | |
| 1fzq_A | 181 | ADP-ribosylation factor-like protein 3; protein-GD | 96.91 | |
| 2ged_A | 193 | SR-beta, signal recognition particle receptor beta | 96.91 | |
| 2nzj_A | 175 | GTP-binding protein REM 1; GDP/GTP binding, GTP hy | 96.9 | |
| 3fb4_A | 216 | Adenylate kinase; psychrophIle, phosphotransferase | 96.9 | |
| 2pbr_A | 195 | DTMP kinase, thymidylate kinase; transferase, nucl | 96.89 | |
| 1e6c_A | 173 | Shikimate kinase; phosphoryl transfer, ADP, shikim | 96.88 | |
| 1zuh_A | 168 | Shikimate kinase; alpha-beta protein, transferase; | 96.88 | |
| 2erx_A | 172 | GTP-binding protein DI-RAS2; GTP hydrolysis, trans | 96.88 | |
| 2cdn_A | 201 | Adenylate kinase; phosphoryl transfer, associative | 96.86 | |
| 1zak_A | 222 | Adenylate kinase; ATP:AMP-phosphotransferase, tran | 96.86 | |
| 3tw8_B | 181 | RAS-related protein RAB-35; longin domain, RAB GTP | 96.86 | |
| 3q85_A | 169 | GTP-binding protein REM 2; G-domain, CAV2 beta, si | 96.86 | |
| 1ko7_A | 314 | HPR kinase/phosphatase; protein kinase, phosphotra | 96.85 | |
| 1ukz_A | 203 | Uridylate kinase; transferase; HET: ADP AMP; 1.90A | 96.85 | |
| 2pt5_A | 168 | Shikimate kinase, SK; aromatic amino acid biosynth | 96.84 | |
| 1z2a_A | 168 | RAS-related protein RAB-23; RAB GTPase, vesicular | 96.84 | |
| 2w58_A | 202 | DNAI, primosome component (helicase loader); ATP-b | 96.83 | |
| 2iyv_A | 184 | Shikimate kinase, SK; transferase, aromatic amino | 96.83 | |
| 3dl0_A | 216 | Adenylate kinase; phosphotransferase, zinc coordin | 96.83 | |
| 1qf9_A | 194 | UMP/CMP kinase, protein (uridylmonophosphate/cytid | 96.82 | |
| 3a4m_A | 260 | L-seryl-tRNA(SEC) kinase; P-loop motif, walker A m | 96.82 | |
| 3euj_A | 483 | Chromosome partition protein MUKB, linker; MUKB, M | 96.82 | |
| 2lkc_A | 178 | Translation initiation factor IF-2; NMR {Geobacill | 96.81 | |
| 2dyk_A | 161 | GTP-binding protein; GTPase, ribosome-binding prot | 96.8 | |
| 3lxw_A | 247 | GTPase IMAP family member 1; immunity, structural | 96.8 | |
| 1kao_A | 167 | RAP2A; GTP-binding protein, small G protein, GDP, | 96.79 | |
| 3bos_A | 242 | Putative DNA replication factor; P-loop containing | 96.79 | |
| 2ce2_X | 166 | GTPase HRAS; signaling protein, guanine nucleotide | 96.78 | |
| 1svi_A | 195 | GTP-binding protein YSXC; ENGB, GTPase, GDP, hydro | 96.78 | |
| 1u8z_A | 168 | RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNH | 96.77 | |
| 1z0j_A | 170 | RAB-22, RAS-related protein RAB-22A; RAB GTPase, R | 96.76 | |
| 1uj2_A | 252 | Uridine-cytidine kinase 2; alpha/beta mononucleoti | 96.76 | |
| 3pqc_A | 195 | Probable GTP-binding protein ENGB; rossmann fold, | 96.75 | |
| 1moz_A | 183 | ARL1, ADP-ribosylation factor-like protein 1; GTP- | 96.75 | |
| 1z08_A | 170 | RAS-related protein RAB-21; RAB GTPase, vesicular | 96.75 | |
| 1a7j_A | 290 | Phosphoribulokinase; transferase, calvin cycle; 2. | 96.75 | |
| 1ek0_A | 170 | Protein (GTP-binding protein YPT51); vesicular tra | 96.75 | |
| 2grj_A | 192 | Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosp | 96.74 | |
| 3bgw_A | 444 | DNAB-like replicative helicase; ATPase, replicatio | 96.74 | |
| 1ky3_A | 182 | GTP-binding protein YPT7P; vesicular traffic, GTP | 96.74 | |
| 1c1y_A | 167 | RAS-related protein RAP-1A; GTP-binding proteins, | 96.73 | |
| 2cxx_A | 190 | Probable GTP-binding protein ENGB; structural geno | 96.73 | |
| 1g16_A | 170 | RAS-related protein SEC4; G protein RAB, signaling | 96.72 | |
| 1wms_A | 177 | RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, p | 96.72 | |
| 1wf3_A | 301 | GTP-binding protein; GTPase, riken structural geno | 96.7 | |
| 2fn4_A | 181 | P23, RAS-related protein R-RAS; GDP/GTP binding, G | 96.69 | |
| 2xb4_A | 223 | Adenylate kinase; ATP-binding, nucleotide-binding, | 96.67 | |
| 2hxs_A | 178 | RAB-26, RAS-related protein RAB-28; GTPase, signal | 96.66 | |
| 3tlx_A | 243 | Adenylate kinase 2; structural genomics, structura | 96.65 | |
| 4dsu_A | 189 | GTPase KRAS, isoform 2B; small G-protein, signalin | 96.65 | |
| 1r2q_A | 170 | RAS-related protein RAB-5A; GTPase, GNP, atomic re | 96.65 | |
| 3cbq_A | 195 | GTP-binding protein REM 2; FLJ38964A, structural g | 96.65 | |
| 3t5d_A | 274 | Septin-7; GTP-binding protein, cytoskeleton, signa | 96.64 | |
| 2oil_A | 193 | CATX-8, RAS-related protein RAB-25; G-protein, GDP | 96.64 | |
| 3t1o_A | 198 | Gliding protein MGLA; G domain containing protein, | 96.64 | |
| 3clv_A | 208 | RAB5 protein, putative; malaria, GTPase, structura | 96.64 | |
| 3iby_A | 256 | Ferrous iron transport protein B; G protein, G dom | 96.63 | |
| 2f6r_A | 281 | COA synthase, bifunctional coenzyme A synthase; 18 | 96.63 | |
| 1upt_A | 171 | ARL1, ADP-ribosylation factor-like protein 1; hydr | 96.63 | |
| 3bc1_A | 195 | RAS-related protein RAB-27A; RAB27, GTPase, RAB, s | 96.63 | |
| 3iev_A | 308 | GTP-binding protein ERA; ERA, GTPase, KH domain, a | 96.63 | |
| 1jbk_A | 195 | CLPB protein; beta barrel, chaperone; 1.80A {Esche | 96.61 | |
| 1r8s_A | 164 | ADP-ribosylation factor 1; protein transport/excha | 96.6 | |
| 3v9p_A | 227 | DTMP kinase, thymidylate kinase; ssgcid, STRU geno | 96.6 | |
| 1ksh_A | 186 | ARF-like protein 2; small GTPase, small GTP-bindin | 96.58 | |
| 2a9k_A | 187 | RAS-related protein RAL-A; bacterial ADP-ribosyltr | 96.57 | |
| 3con_A | 190 | GTPase NRAS; structural genomics consortium, SGC, | 96.57 | |
| 2y8e_A | 179 | RAB-protein 6, GH09086P, RAB6; hydrolase, nucleoti | 96.56 | |
| 2g6b_A | 180 | RAS-related protein RAB-26; G-protein, GTP analogu | 96.56 | |
| 1z0f_A | 179 | RAB14, member RAS oncogene family; RAB GTPase, ves | 96.56 | |
| 2dby_A | 368 | GTP-binding protein; GDP, structural genomics, NPP | 96.55 | |
| 2il1_A | 192 | RAB12; G-protein, GDP, GTPase, predicted, structur | 96.54 | |
| 3a1s_A | 258 | Iron(II) transport protein B; FEOB, iron transport | 96.53 | |
| 2efe_B | 181 | Small GTP-binding protein-like; GEF, GTPase, VPS9, | 96.53 | |
| 2xtp_A | 260 | GTPase IMAP family member 2; immune system, G prot | 96.53 | |
| 3be4_A | 217 | Adenylate kinase; malaria, cryptosporidium parvum | 96.52 | |
| 1nrj_B | 218 | SR-beta, signal recognition particle receptor beta | 96.51 | |
| 4dhe_A | 223 | Probable GTP-binding protein ENGB; melioidosis, RA | 96.51 | |
| 1e4v_A | 214 | Adenylate kinase; transferase(phosphotransferase); | 96.51 | |
| 3i8s_A | 274 | Ferrous iron transport protein B; GTPase, GPCR, ir | 96.5 | |
| 1zbd_A | 203 | Rabphilin-3A; G protein, effector, RABCDR, synapti | 96.5 | |
| 2bme_A | 186 | RAB4A, RAS-related protein RAB4A; GTP-binding prot | 96.49 | |
| 1ltq_A | 301 | Polynucleotide kinase; phosphatase, alpha/beta, P- | 96.49 | |
| 2bov_A | 206 | RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, | 96.49 | |
| 3zvl_A | 416 | Bifunctional polynucleotide phosphatase/kinase; hy | 96.49 | |
| 4edh_A | 213 | DTMP kinase, thymidylate kinase; structural genomi | 96.48 | |
| 1vg8_A | 207 | RAS-related protein RAB-7; GTP-binding protein, pr | 96.48 | |
| 2gf9_A | 189 | RAS-related protein RAB-3D; G-protein, structural | 96.48 | |
| 2h57_A | 190 | ADP-ribosylation factor-like protein 6; GTP, GTPas | 96.48 | |
| 3cnl_A | 262 | YLQF, putative uncharacterized protein; circular p | 96.47 | |
| 4bas_A | 199 | ADP-ribosylation factor, putative (small GTPase, p | 96.47 | |
| 3t5g_A | 181 | GTP-binding protein RHEB; immunoglobulin-like beta | 96.46 | |
| 3tkl_A | 196 | RAS-related protein RAB-1A; vesicle trafficking, p | 96.46 | |
| 1m7b_A | 184 | RND3/RHOE small GTP-binding protein; small GTPase, | 96.46 | |
| 2qu8_A | 228 | Putative nucleolar GTP-binding protein 1; GTPase, | 96.46 | |
| 2gf0_A | 199 | GTP-binding protein DI-RAS1; GDP/GTP binding, GTP | 96.45 | |
| 2o52_A | 200 | RAS-related protein RAB-4B; G-protein, GDP, struct | 96.45 | |
| 3d3q_A | 340 | TRNA delta(2)-isopentenylpyrophosphate transferase | 96.44 | |
| 3lv8_A | 236 | DTMP kinase, thymidylate kinase; structural genomi | 96.44 | |
| 1ak2_A | 233 | Adenylate kinase isoenzyme-2; nucleoside monophosp | 96.43 | |
| 2fg5_A | 192 | RAB-22B, RAS-related protein RAB-31; G-protein, GT | 96.43 | |
| 1l8q_A | 324 | Chromosomal replication initiator protein DNAA; AA | 96.43 | |
| 1mh1_A | 186 | RAC1; GTP-binding, GTPase, small G-protein, RHO fa | 96.43 | |
| 3h4m_A | 285 | Proteasome-activating nucleotidase; ATPase, PAN, A | 96.42 | |
| 1zj6_A | 187 | ADP-ribosylation factor-like protein 5; ARL, GTP-b | 96.42 | |
| 2cjw_A | 192 | GTP-binding protein GEM; nucleotide-binding, small | 96.42 | |
| 3kkq_A | 183 | RAS-related protein M-RAS; GTP-binding, GTPase, si | 96.4 | |
| 2wsm_A | 221 | Hydrogenase expression/formation protein (HYPB); m | 96.4 | |
| 1z06_A | 189 | RAS-related protein RAB-33B; RAB GTPase, RAB33B GT | 96.4 | |
| 1jwy_B | 315 | Dynamin A GTPase domain; dynamin, GTPase, GDP, myo | 96.39 | |
| 2f7s_A | 217 | C25KG, RAS-related protein RAB-27B; G-protein, str | 96.38 | |
| 2a5j_A | 191 | RAS-related protein RAB-2B; GTPase, signal transdu | 96.38 | |
| 2p65_A | 187 | Hypothetical protein PF08_0063; CLPB, malaria, str | 96.38 | |
| 3oes_A | 201 | GTPase rhebl1; small GTPase, structural genomics, | 96.37 | |
| 2h17_A | 181 | ADP-ribosylation factor-like protein 5A; GDP, GTPa | 96.37 | |
| 3tqf_A | 181 | HPR(Ser) kinase; transferase, hydrolase; 2.80A {Co | 96.37 | |
| 4tmk_A | 213 | Protein (thymidylate kinase); ATP:DTMP phosphotran | 96.37 | |
| 3a8t_A | 339 | Adenylate isopentenyltransferase; rossmann fold pr | 96.36 | |
| 3llu_A | 196 | RAS-related GTP-binding protein C; structural geno | 96.35 | |
| 3exa_A | 322 | TRNA delta(2)-isopentenylpyrophosphate transferase | 96.35 | |
| 2h92_A | 219 | Cytidylate kinase; rossmann fold, transferase; HET | 96.35 | |
| 2q3h_A | 201 | RAS homolog gene family, member U; GTPase, structu | 96.35 | |
| 1sky_E | 473 | F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alp | 96.35 | |
| 3dz8_A | 191 | RAS-related protein RAB-3B; GDP, GTPase, structura | 96.35 | |
| 3reg_A | 194 | RHO-like small GTPase; cytoskeleton, nucleotide-bi | 96.34 | |
| 2ew1_A | 201 | RAS-related protein RAB-30; G-protein, GTP analogu | 96.34 | |
| 2atv_A | 196 | RERG, RAS-like estrogen-regulated growth inhibitor | 96.33 | |
| 1zd9_A | 188 | ADP-ribosylation factor-like 10B; transport protei | 96.33 | |
| 3umf_A | 217 | Adenylate kinase; rossmann fold, transferase; 2.05 | 96.32 | |
| 2j1l_A | 214 | RHO-related GTP-binding protein RHOD; GTPase, memb | 96.32 | |
| 2qmh_A | 205 | HPR kinase/phosphorylase; V267F mutation, ATP-bind | 96.32 | |
| 2i1q_A | 322 | DNA repair and recombination protein RADA; ATPase, | 96.31 | |
| 1x3s_A | 195 | RAS-related protein RAB-18; GTPase, GNP, structura | 96.31 | |
| 3cph_A | 213 | RAS-related protein SEC4; RAB GTPase, prenylation, | 96.31 | |
| 2bcg_Y | 206 | Protein YP2, GTP-binding protein YPT1; RABGTPase, | 96.3 | |
| 2p5s_A | 199 | RAS and EF-hand domain containing; G-protein, RAB, | 96.3 | |
| 3tmk_A | 216 | Thymidylate kinase; phosphotransferase; HET: T5A; | 96.3 | |
| 1ypw_A | 806 | Transitional endoplasmic reticulum ATPase; AAA, P9 | 96.29 | |
| 2iwr_A | 178 | Centaurin gamma 1; ANK repeat, zinc-finger, GTP-bi | 96.28 | |
| 2ocp_A | 241 | DGK, deoxyguanosine kinase; protein-nucleotide com | 96.28 | |
| 2fu5_C | 183 | RAS-related protein RAB-8A; MSS4:RAB8 protein comp | 96.27 | |
| 3crm_A | 323 | TRNA delta(2)-isopentenylpyrophosphate transferase | 96.27 | |
| 2b6h_A | 192 | ADP-ribosylation factor 5; membrane trafficking, G | 96.27 | |
| 3ld9_A | 223 | DTMP kinase, thymidylate kinase; ssgcid, NIH, niai | 96.26 | |
| 2qz4_A | 262 | Paraplegin; AAA+, SPG7, protease, ADP, structural | 96.24 | |
| 2fv8_A | 207 | H6, RHO-related GTP-binding protein RHOB; GDP/GTP | 96.23 | |
| 3c5c_A | 187 | RAS-like protein 12; GDP, GTPase, structural genom | 96.23 | |
| 2aka_B | 299 | Dynamin-1; fusion protein, GTPase domain, myosin, | 96.23 | |
| 3bwd_D | 182 | RAC-like GTP-binding protein ARAC6; G domain, cyto | 96.22 | |
| 1gwn_A | 205 | RHO-related GTP-binding protein RHOE; GTPase, inac | 96.22 | |
| 3def_A | 262 | T7I23.11 protein; chloroplast, TOC33, GTPase, hydr | 96.21 | |
| 3cmw_A | 1706 | Protein RECA, recombinase A; homologous recombinat | 96.2 | |
| 2g3y_A | 211 | GTP-binding protein GEM; small GTPase, GDP, inacti | 96.18 | |
| 1h65_A | 270 | Chloroplast outer envelope protein OEP34; GTPase, | 96.18 | |
| 2r62_A | 268 | Cell division protease FTSH homolog; ATPase domain | 96.18 | |
| 2fh5_B | 214 | SR-beta, signal recognition particle receptor beta | 96.17 | |
| 2zts_A | 251 | Putative uncharacterized protein PH0186; KAIC like | 96.17 | |
| 3n70_A | 145 | Transport activator; sigma-54, ntpase, PSI, MCSG, | 96.14 | |
| 4dcu_A | 456 | GTP-binding protein ENGA; GTPase, GDP, protein bin | 96.13 | |
| 2gco_A | 201 | H9, RHO-related GTP-binding protein RHOC; GTPase,s | 96.13 | |
| 1sxj_D | 353 | Activator 1 41 kDa subunit; clamp loader, processi | 96.13 | |
| 1p5z_B | 263 | DCK, deoxycytidine kinase; nucleoside kinase, P-lo | 96.13 | |
| 4djt_A | 218 | GTP-binding nuclear protein GSP1; structural genom | 96.12 | |
| 2atx_A | 194 | Small GTP binding protein TC10; GTPase, P-loop, al | 96.08 | |
| 2x77_A | 189 | ADP-ribosylation factor; GTP-binding protein, smal | 96.08 | |
| 2v3c_C | 432 | SRP54, signal recognition 54 kDa protein; nucleoti | 96.06 | |
| 2yc2_C | 208 | IFT27, small RAB-related GTPase; transport protein | 96.06 | |
| 2orw_A | 184 | Thymidine kinase; TMTK, TP4A, transferase; HET: 4T | 96.05 | |
| 2hf9_A | 226 | Probable hydrogenase nickel incorporation protein | 96.04 | |
| 3foz_A | 316 | TRNA delta(2)-isopentenylpyrophosphate transferas; | 96.04 | |
| 3cpj_B | 223 | GTP-binding protein YPT31/YPT8; RAB GTPase, prenyl | 95.95 | |
| 2hup_A | 201 | RAS-related protein RAB-43; G-protein, GDP, struct | 95.95 | |
| 3sr0_A | 206 | Adenylate kinase; phosphoryl transfer analogue, AL | 95.91 | |
| 3q3j_B | 214 | RHO-related GTP-binding protein RHO6; RAS-binding | 95.87 | |
| 2v1u_A | 387 | Cell division control protein 6 homolog; DNA repli | 95.85 | |
| 4gzl_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 95.83 | |
| 4hlc_A | 205 | DTMP kinase, thymidylate kinase; TMK, MRSA, pipiri | 95.8 | |
| 2chg_A | 226 | Replication factor C small subunit; DNA-binding pr | 95.79 | |
| 2j0v_A | 212 | RAC-like GTP-binding protein ARAC7; nucleotide-bin | 95.76 | |
| 3eph_A | 409 | TRNA isopentenyltransferase; transferase, alternat | 95.74 | |
| 3syl_A | 309 | Protein CBBX; photosynthesis, rubisco activase, AA | 95.73 | |
| 1puj_A | 282 | YLQF, conserved hypothetical protein YLQF; structu | 95.69 | |
| 1wxq_A | 397 | GTP-binding protein; structural genomics, riken st | 95.58 | |
| 2hjg_A | 436 | GTP-binding protein ENGA; GTPase ENGA KH-domain, h | 95.55 | |
| 3r7w_A | 307 | Gtpase1, GTP-binding protein GTR1; RAG gtpases, GT | 95.55 | |
| 3pvs_A | 447 | Replication-associated recombination protein A; ma | 95.55 | |
| 2qgz_A | 308 | Helicase loader, putative primosome component; str | 95.53 | |
| 1d2n_A | 272 | N-ethylmaleimide-sensitive fusion protein; hexamer | 95.52 | |
| 3th5_A | 204 | RAS-related C3 botulinum toxin substrate 1; rossma | 94.49 | |
| 1ofh_A | 310 | ATP-dependent HSL protease ATP-binding subunit HSL | 95.5 | |
| 1xwi_A | 322 | SKD1 protein; VPS4B, AAA ATPase, protein transport | 95.49 | |
| 3p32_A | 355 | Probable GTPase RV1496/MT1543; structural genomics | 95.45 | |
| 3uk6_A | 368 | RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding | 95.44 | |
| 3l0i_B | 199 | RAS-related protein RAB-1A; GEF-GDF-RAB complex, G | 95.44 | |
| 3hws_A | 363 | ATP-dependent CLP protease ATP-binding subunit CL; | 95.4 | |
| 3t15_A | 293 | Ribulose bisphosphate carboxylase/oxygenase activ | 95.4 | |
| 2x2e_A | 353 | Dynamin-1; nitration, hydrolase, membrane fission, | 95.37 | |
| 2bjv_A | 265 | PSP operon transcriptional activator; AAA, transcr | 95.37 | |
| 2qby_B | 384 | CDC6 homolog 3, cell division control protein 6 ho | 95.34 | |
| 3d8b_A | 357 | Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, s | 95.34 | |
| 2vhj_A | 331 | Ntpase P4, P4; non- hydrolysable ATP analogue, hyd | 95.33 | |
| 3gj0_A | 221 | GTP-binding nuclear protein RAN; G protein, GDP, a | 95.3 | |
| 3eie_A | 322 | Vacuolar protein sorting-associated protein 4; AAA | 95.3 | |
| 1lw7_A | 365 | Transcriptional regulator NADR; NMN, NMN adenylyl | 95.29 | |
| 3ec1_A | 369 | YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase | 95.27 | |
| 1m8p_A | 573 | Sulfate adenylyltransferase; rossmann fold, phosph | 95.22 | |
| 1lnz_A | 342 | SPO0B-associated GTP-binding protein; GTPase, OBG, | 95.21 | |
| 1x6v_B | 630 | Bifunctional 3'-phosphoadenosine 5'- phosphosulfat | 95.21 | |
| 1xp8_A | 366 | RECA protein, recombinase A; recombination, radior | 95.2 | |
| 3co5_A | 143 | Putative two-component system transcriptional RES | 95.2 | |
| 3gmt_A | 230 | Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucle | 95.19 | |
| 2qpt_A | 550 | EH domain-containing protein-2; protein-nucleotide | 95.19 | |
| 2qen_A | 350 | Walker-type ATPase; unknown function; HET: ADP; 2. | 95.18 | |
| 1g8f_A | 511 | Sulfate adenylyltransferase; alpha-beta protein, b | 95.15 | |
| 1g5t_A | 196 | COB(I)alamin adenosyltransferase; P-loop protein, | 95.14 |
| >3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-62 Score=418.11 Aligned_cols=224 Identities=25% Similarity=0.372 Sum_probs=185.5
Q ss_pred eEEEEeEEEECCCC--ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGT--QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 17 ~l~~~~l~~~y~~~--~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
||+++||+++|+++ ..++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+.......
T Consensus 1 ~l~~~~l~~~y~~~~~~~~~L~~isl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~~~~~~~ 80 (235)
T 3tif_A 1 MVKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (235)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEEEEEEeCCCCcceeeEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCceEEEECCEEcccCCHHHHHHH
Confidence 58999999999642 2469999999999999999999999999999999999999999999999998754321110011
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
+++++||+||++. +++.+||+||+.++...............+++.++++.+++.+...++++.+|||||||||+||||
T Consensus 81 ~~~~i~~v~Q~~~-l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq~QRv~iAra 159 (235)
T 3tif_A 81 RRDKIGFVFQQFN-LIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARA 159 (235)
T ss_dssp HHHHEEEECTTCC-CCTTSCHHHHHHHHHHTCSSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHH
T ss_pred hhccEEEEecCCc-cCCCCcHHHHHHHHHHhhhccCCCHHHHHHHHHHHHHHCCCChhhhhCChhhCCHHHHHHHHHHHH
Confidence 1346999999984 677889999998852111000111233455678899999998743599999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-c-CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLK-K-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
|+.+|++|||||||+|||+.++..++++|++++ + ++|||+||||++. ..+||++++|++|+++.++.
T Consensus 160 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHd~~~-~~~~d~i~~l~~G~i~~~~~ 228 (235)
T 3tif_A 160 LANNPPIILADQPTWALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINV-ARFGERIIYLKDGEVEREEK 228 (235)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHH-HTTSSEEEEEETTEEEEEEE
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHHcCCEEEEEcCCHHH-HHhCCEEEEEECCEEEEEcC
Confidence 999999999999999999999999999999985 3 7999999999996 47999999999999988754
|
| >3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-62 Score=425.96 Aligned_cols=222 Identities=30% Similarity=0.461 Sum_probs=189.4
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
.+++|+++||+++|+++ .++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++..... ...
T Consensus 4 ~~~~l~i~~ls~~y~~~-~~~L~~isl~i~~Ge~~~iiGpnGsGKSTLl~~l~Gl~~p~~G~I~~~G~~i~~~~~--~~~ 80 (275)
T 3gfo_A 4 EDYILKVEELNYNYSDG-THALKGINMNIKRGEVTAILGGNGVGKSTLFQNFNGILKPSSGRILFDNKPIDYSRK--GIM 80 (275)
T ss_dssp CCEEEEEEEEEEECTTS-CEEEEEEEEEEETTSEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCCSHH--HHH
T ss_pred cCcEEEEEEEEEEECCC-CeEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHHcCCCCCCeEEEECCEECCcccc--cHH
Confidence 35689999999999753 459999999999999999999999999999999999999999999999998742100 001
Q ss_pred CCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
.++++||||||+|...++..||+||+.++...... ...+..+++.++++.+||.+. .++++.+|||||||||+|||
T Consensus 81 ~~~~~ig~v~Q~~~~~~~~~tv~e~l~~~~~~~~~---~~~~~~~~~~~~l~~~~L~~~-~~~~~~~LSgGqkQRv~iAr 156 (275)
T 3gfo_A 81 KLRESIGIVFQDPDNQLFSASVYQDVSFGAVNMKL---PEDEIRKRVDNALKRTGIEHL-KDKPTHCLSFGQKKRVAIAG 156 (275)
T ss_dssp HHHHSEEEECSSGGGTCCSSBHHHHHHHHHHTSCC---CHHHHHHHHHHHHHHTTCGGG-TTSBGGGSCHHHHHHHHHHH
T ss_pred HHhCcEEEEEcCcccccccCcHHHHHHHHHHHcCC---CHHHHHHHHHHHHHHcCCchh-hcCCcccCCHHHHHHHHHHH
Confidence 12467999999985445578999999987322111 123445678899999999875 79999999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-c-CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLK-K-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
||+.+|++|||||||+|||+.+++.++++|++++ + ++|||+||||++++..+|||+++|++|+++.++.
T Consensus 157 aL~~~P~lLlLDEPts~LD~~~~~~i~~~l~~l~~~~g~tvi~vtHdl~~~~~~~drv~~l~~G~i~~~g~ 227 (275)
T 3gfo_A 157 VLVMEPKVLILDEPTAGLDPMGVSEIMKLLVEMQKELGITIIIATHDIDIVPLYCDNVFVMKEGRVILQGN 227 (275)
T ss_dssp HHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHCCEEEEEESCCSSGGGGCSEEEEEETTEEEEEEC
T ss_pred HHHcCCCEEEEECccccCCHHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999986 4 7999999999999999999999999999997653
|
| >3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C | Back alignment and structure |
|---|
Probab=100.00 E-value=3e-62 Score=437.76 Aligned_cols=223 Identities=24% Similarity=0.410 Sum_probs=190.7
Q ss_pred CcceEEEEeEEEECCCC--ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGT--QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSP 91 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~--~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 91 (245)
..+||+++||+++|+++ ..++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+....
T Consensus 21 ~~~mi~v~~ls~~y~~~~~~~~aL~~vsl~i~~Gei~~IiGpnGaGKSTLlr~i~GL~~p~~G~I~i~G~~i~~~~~~~~ 100 (366)
T 3tui_C 21 DKHMIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESEL 100 (366)
T ss_dssp --CCEEEEEEEEEEECSSSEEEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECSSCCHHHH
T ss_pred CCceEEEEeEEEEeCCCCCCeEEEEeeEEEEcCCCEEEEEcCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCHHHH
Confidence 45689999999999642 3469999999999999999999999999999999999999999999999999865321110
Q ss_pred CCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHH
Q 035832 92 EPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLAL 171 (245)
Q Consensus 92 ~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~i 171 (245)
. ..+++||||||++. +++.+||+||+.++...... ...+..+++.++++.+||.+. .+++|.+|||||||||+|
T Consensus 101 ~-~~r~~Ig~v~Q~~~-l~~~~TV~env~~~~~~~~~---~~~~~~~~v~~lL~~vgL~~~-~~~~~~~LSGGqkQRVaI 174 (366)
T 3tui_C 101 T-KARRQIGMIFQHFN-LLSSRTVFGNVALPLELDNT---PKDEVKRRVTELLSLVGLGDK-HDSYPSNLSGGQKQRVAI 174 (366)
T ss_dssp H-HHHTTEEEECSSCC-CCTTSCHHHHHHHHHHHSCC---CHHHHHHHHHHHHHHHTCGGG-TTCCTTTSCHHHHHHHHH
T ss_pred H-HHhCcEEEEeCCCc-cCCCCCHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHcCCchH-hcCChhhCCHHHHHHHHH
Confidence 0 12467999999985 77889999999986321111 133445678899999999875 799999999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-c-CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 172 AIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLK-K-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 172 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
||||+.+|++|||||||+|||+.++..++++|++++ + +.|||+||||++++..+||||++|++|+++.++.
T Consensus 175 ArAL~~~P~lLLlDEPTs~LD~~~~~~i~~lL~~l~~~~g~Tii~vTHdl~~~~~~aDrv~vl~~G~iv~~g~ 247 (366)
T 3tui_C 175 ARALASNPKVLLCDQATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDT 247 (366)
T ss_dssp HHHTTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEECCB
T ss_pred HHHHhcCCCEEEEECCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 999999999999999999999999999999999996 3 6899999999999999999999999999998653
|
| >3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=100.00 E-value=7.1e-61 Score=428.42 Aligned_cols=218 Identities=29% Similarity=0.421 Sum_probs=188.5
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
++|+++||+|+|++ .++|+||||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...... ....
T Consensus 3 ~~l~i~~ls~~y~~--~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~i~~~~~~--~~~~ 78 (359)
T 3fvq_A 3 AALHIGHLSKSFQN--TPVLNDISLSLDPGEILFIIGASGCGKTTLLRCLAGFEQPDSGEISLSGKTIFSKNTN--LPVR 78 (359)
T ss_dssp CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEEETTEEEESSSCB--CCGG
T ss_pred cEEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCchHHHHHHHHhcCCCCCCcEEEECCEECcccccc--cchh
Confidence 37999999999964 5799999999999999999999999999999999999999999999999987432111 1123
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
+++||||||++. +|+.+||+||+.|+....... ..+..+++.++++.++|.+. ++++|.+|||||||||+|||||
T Consensus 79 ~r~ig~vfQ~~~-l~p~ltV~eni~~~l~~~~~~---~~~~~~~v~~~l~~~gL~~~-~~r~~~~LSGGq~QRValArAL 153 (359)
T 3fvq_A 79 ERRLGYLVQEGV-LFPHLTVYRNIAYGLGNGKGR---TAQERQRIEAMLELTGISEL-AGRYPHELSGGQQQRAALARAL 153 (359)
T ss_dssp GSCCEEECTTCC-CCTTSCHHHHHHTTSTTSSCC---SHHHHHHHHHHHHHHTCGGG-TTSCGGGSCHHHHHHHHHHHHH
T ss_pred hCCEEEEeCCCc-CCCCCCHHHHHHHHHHHcCCC---hHHHHHHHHHHHHHcCCchH-hcCChhhCCHHHHHHHHHHHHH
Confidence 467999999984 788899999999974322111 22345578899999999975 7999999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-c-CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLK-K-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
+.+|++|||||||+|||+..+.++++.|.++. + +.|+|+||||++++..+||||++|++|+++..+.
T Consensus 154 ~~~P~lLLLDEPts~LD~~~r~~l~~~l~~~~~~~g~tvi~vTHd~~ea~~~aDri~vl~~G~i~~~g~ 222 (359)
T 3fvq_A 154 APDPELILLDEPFSALDEQLRRQIREDMIAALRANGKSAVFVSHDREEALQYADRIAVMKQGRILQTAS 222 (359)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred HcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEEeC
Confidence 99999999999999999999999999888764 3 6899999999999999999999999999987653
|
| >3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-60 Score=429.92 Aligned_cols=212 Identities=29% Similarity=0.443 Sum_probs=188.6
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
+|+++||+|+|++ ..+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...+. .+
T Consensus 3 ~l~~~~l~~~yg~--~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~p~~G~I~i~G~~~~~~~~------~~ 74 (381)
T 3rlf_A 3 SVQLQNVTKAWGE--VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPP------AE 74 (381)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCCG------GG
T ss_pred EEEEEeEEEEECC--EEEEeeeEEEECCCCEEEEEcCCCchHHHHHHHHHcCCCCCCeEEEECCEECCCCCH------HH
Confidence 6999999999964 579999999999999999999999999999999999999999999999999864322 13
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
+.||||||++. +|+.+||+||+.|+...... .+.+..+++.++++.++|.+. ++++|.+|||||||||+|||||+
T Consensus 75 r~ig~VfQ~~~-l~p~ltV~eni~~~~~~~~~---~~~~~~~~v~~~l~~~~L~~~-~~r~p~~LSGGqrQRVaiArAL~ 149 (381)
T 3rlf_A 75 RGVGMVFQSYA-LYPHLSVAENMSFGLKLAGA---KKEVINQRVNQVAEVLQLAHL-LDRKPKALSGGQRQRVAIGRTLV 149 (381)
T ss_dssp SCEEEECTTCC-CCTTSCHHHHHTHHHHHTTC---CHHHHHHHHHHHHHHTTCGGG-TTCCGGGSCHHHHHHHHHHHHHH
T ss_pred CCEEEEecCCc-CCCCCCHHHHHHHHHHHcCC---CHHHHHHHHHHHHHHcCCchh-hcCChhHCCHHHHHHHHHHHHHH
Confidence 67999999984 78899999999997321111 133455678899999999875 79999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-c-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLK-K-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
.+|++|||||||++||+..+.++++.|+++. + +.|+|+||||++++..+||||++|++|+++..+
T Consensus 150 ~~P~lLLLDEPts~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~ea~~~aDri~vl~~G~i~~~g 216 (381)
T 3rlf_A 150 AEPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVG 216 (381)
T ss_dssp HCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEECSCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred cCCCEEEEECCCcCCCHHHHHHHHHHHHHHHHhCCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEe
Confidence 9999999999999999999999999999985 3 799999999999999999999999999998764
|
| >2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-61 Score=405.51 Aligned_cols=218 Identities=30% Similarity=0.425 Sum_probs=184.5
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
+||+++|++++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+.......+
T Consensus 3 ~~l~~~~l~~~y~~--~~~l~~vsl~i~~Ge~~~iiG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 80 (224)
T 2pcj_A 3 EILRAENIKKVIRG--YEILKGISLSVKKGEFVSIIGASGSGKSTLLYILGLLDAPTEGKVFLEGKEVDYTNEKELSLLR 80 (224)
T ss_dssp EEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEEECTTSCHHHHHHHHTTSSCCSEEEEEETTEECCSSCHHHHHHHH
T ss_pred cEEEEEeEEEEECC--EeeEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCCCCHHHHHHHH
Confidence 47999999999964 5799999999999999999999999999999999999999999999999987432110000011
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
++++||+||++. +++.+||.||+.++.... .. ......+++.++++.+++.+. .++++.+|||||||||+|||||
T Consensus 81 ~~~i~~v~q~~~-l~~~~tv~e~l~~~~~~~-~~--~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgGq~qrv~laral 155 (224)
T 2pcj_A 81 NRKLGFVFQFHY-LIPELTALENVIVPMLKM-GK--PKKEAKERGEYLLSELGLGDK-LSRKPYELSGGEQQRVAIARAL 155 (224)
T ss_dssp HHHEEEECSSCC-CCTTSCHHHHHHHHHHHT-TC--CHHHHHHHHHHHHHHTTCTTC-TTCCGGGSCHHHHHHHHHHHHT
T ss_pred hCcEEEEecCcc-cCCCCCHHHHHHhHHHHc-CC--CHHHHHHHHHHHHHHcCCchh-hhCChhhCCHHHHHHHHHHHHH
Confidence 256999999984 677889999998852111 11 112334567889999999875 7999999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+.+|++|||||||+|||+.+++.++++|+++++ +.|||++|||++++ .+||++++|++|+++.++
T Consensus 156 ~~~p~lllLDEPt~~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~v~~l~~G~i~~~g 221 (224)
T 2pcj_A 156 ANEPILLFADEPTGNLDSANTKRVMDIFLKINEGGTSIVMVTHERELA-ELTHRTLEMKDGKVVGEI 221 (224)
T ss_dssp TTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHH-TTSSEEEEEETTEEEEEE
T ss_pred HcCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEcCCHHHH-HhCCEEEEEECCEEEEEe
Confidence 999999999999999999999999999999864 68999999999987 899999999999998765
|
| >2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-60 Score=409.65 Aligned_cols=217 Identities=28% Similarity=0.399 Sum_probs=185.2
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
||+++||+++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++. .+... ...++
T Consensus 24 ~l~i~~l~~~y~~--~~vL~~vsl~i~~Gei~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~-~~~~~-~~~~~ 99 (263)
T 2olj_A 24 MIDVHQLKKSFGS--LEVLKGINVHIREGEVVVVIGPSGSGKSTFLRCLNLLEDFDEGEIIIDGINLK-AKDTN-LNKVR 99 (263)
T ss_dssp SEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEESS-STTCC-HHHHH
T ss_pred eEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEEcCCCCcHHHHHHHHHcCCCCCCcEEEECCEECC-Ccccc-HHHHh
Confidence 6999999999964 56999999999999999999999999999999999999999999999999874 11110 01124
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
+++|||||++. +++.+||+||+.++....... ......+++.++++.+++.+. +++++.+|||||||||+|||||+
T Consensus 100 ~~i~~v~Q~~~-l~~~~tv~e~l~~~~~~~~~~--~~~~~~~~~~~~l~~~~L~~~-~~~~~~~LSgGqkQRv~lAraL~ 175 (263)
T 2olj_A 100 EEVGMVFQRFN-LFPHMTVLNNITLAPMKVRKW--PREKAEAKAMELLDKVGLKDK-AHAYPDSLSGGQAQRVAIARALA 175 (263)
T ss_dssp HHEEEECSSCC-CCTTSCHHHHHHHHHHHTSCC--CHHHHHHHHHHHHHHTTCGGG-TTSCGGGSCHHHHHHHHHHHHHT
T ss_pred CcEEEEeCCCc-CCCCCCHHHHHHHHHHHHcCC--CHHHHHHHHHHHHHHCCCchH-hcCChhhCCHHHHHHHHHHHHHH
Confidence 57999999984 677889999998852111111 122234567889999999875 79999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
.+|++|||||||+|||+.+++.++++|+++++ ++|||++|||++++..+||++++|++|+++..+
T Consensus 176 ~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g 241 (263)
T 2olj_A 176 MEPKIMLFDEPTSALDPEMVGEVLSVMKQLANEGMTMVVVTHEMGFAREVGDRVLFMDGGYIIEEG 241 (263)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred CCCCEEEEeCCcccCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999864 689999999999999999999999999998754
|
| >1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-60 Score=422.47 Aligned_cols=217 Identities=30% Similarity=0.469 Sum_probs=189.5
Q ss_pred cCCcceEEEEeEEEEC-CCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCC
Q 035832 12 SCDYSCLEVRDVSYRP-PGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNS 90 (245)
Q Consensus 12 ~~~~~~l~~~~l~~~y-~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~ 90 (245)
.++.++|+++||+++| ++ +++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...+
T Consensus 9 ~~~~~~l~~~~l~~~y~g~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~--- 83 (355)
T 1z47_A 9 HHGSMTIEFVGVEKIYPGG--ARSVRGVSFQIREGEMVGLLGPSGSGKTTILRLIAGLERPTKGDVWIGGKRVTDLP--- 83 (355)
T ss_dssp --CCEEEEEEEEEECCTTS--TTCEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTCC---
T ss_pred cCCCceEEEEEEEEEEcCC--CEEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEECCEECCcCC---
Confidence 4678899999999999 53 46999999999999999999999999999999999999999999999999875422
Q ss_pred CCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHH
Q 035832 91 PEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLA 170 (245)
Q Consensus 91 ~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ 170 (245)
..++++|||||++. +|+.+||+||+.|+...... ......+++.++++.++|.+. +++++.+|||||||||+
T Consensus 84 ---~~~r~ig~v~Q~~~-l~~~ltv~eni~~~l~~~~~---~~~~~~~~v~~~l~~~gL~~~-~~r~~~~LSGGq~QRva 155 (355)
T 1z47_A 84 ---PQKRNVGLVFQNYA-LFQHMTVYDNVSFGLREKRV---PKDEMDARVRELLRFMRLESY-ANRFPHELSGGQQQRVA 155 (355)
T ss_dssp ---GGGSSEEEECGGGC-CCTTSCHHHHHHHHHHHTTC---CHHHHHHHHHHHHHHTTCGGG-TTSCGGGSCHHHHHHHH
T ss_pred ---hhhCcEEEEecCcc-cCCCCCHHHHHHHHHHHcCC---CHHHHHHHHHHHHHHcCChhH-hcCCcccCCHHHHHHHH
Confidence 12467999999984 77889999999986321111 123345678899999999875 79999999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 171 LAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 171 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|||||+.+|++|||||||++||+..++++++.|+++.+ +.|+|+||||++++..+||++++|++|+++..+
T Consensus 156 lArAL~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g 228 (355)
T 1z47_A 156 LARALAPRPQVLLFDEPFAAIDTQIRRELRTFVRQVHDEMGVTSVFVTHDQEEALEVADRVLVLHEGNVEQFG 228 (355)
T ss_dssp HHHHHTTCCSEEEEESTTCCSSHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 99999999999999999999999999999999999853 689999999999999999999999999998654
|
| >4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-60 Score=408.46 Aligned_cols=216 Identities=26% Similarity=0.371 Sum_probs=187.4
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
+.++|+++|+++.|++ +++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+. .
T Consensus 8 ~~~~l~~~~l~~~~~~--~~vL~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~~~~----~ 81 (266)
T 4g1u_C 8 PVALLEASHLHYHVQQ--QALINDVSLHIASGEMVAIIGPNGAGKSTLLRLLTGYLSPSHGECHLLGQNLNSWQP----K 81 (266)
T ss_dssp CCCEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECCTTSCHHHHHHHHTSSSCCSSCEEEETTEETTTSCH----H
T ss_pred CcceEEEEeEEEEeCC--eeEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECCEECCcCCH----H
Confidence 3468999999999964 579999999999999999999999999999999999999999999999998754321 1
Q ss_pred CCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
.+++.++|+||++. +++.+||.||+.++..... . ....+++.++++.+++.+. .++++.+|||||||||+|||
T Consensus 82 ~~~~~i~~v~q~~~-~~~~~tv~e~l~~~~~~~~-~----~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgGq~QRv~iAr 154 (266)
T 4g1u_C 82 ALARTRAVMRQYSE-LAFPFSVSEVIQMGRAPYG-G----SQDRQALQQVMAQTDCLAL-AQRDYRVLSGGEQQRVQLAR 154 (266)
T ss_dssp HHHHHEEEECSCCC-CCSCCBHHHHHHGGGTTSC-S----TTHHHHHHHHHHHTTCSTT-TTSBGGGCCHHHHHHHHHHH
T ss_pred HHhheEEEEecCCc-cCCCCCHHHHHHhhhhhcC-c----HHHHHHHHHHHHHcCChhH-hcCCcccCCHHHHHHHHHHH
Confidence 12457999999985 5567899999998732211 1 1223467889999999875 79999999999999999999
Q ss_pred HHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-C-ceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 174 QLVQ------VPDLLILDEPLAGLDWKARADVVKLLKHLKK-E-LTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 174 al~~------~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~-~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
||+. +|++|||||||+|||+.++..++++|+++++ + +|||+||||++++..+|||+++|++|+++..+.
T Consensus 155 aL~~~~~~~~~p~lLllDEPts~LD~~~~~~i~~~l~~l~~~~~~tvi~vtHdl~~~~~~~d~v~vl~~G~i~~~g~ 231 (266)
T 4g1u_C 155 VLAQLWQPQPTPRWLFLDEPTSALDLYHQQHTLRLLRQLTRQEPLAVCCVLHDLNLAALYADRIMLLAQGKLVACGT 231 (266)
T ss_dssp HHHHTCCSSCCCEEEEECCCCSSCCHHHHHHHHHHHHHHHHHSSEEEEEECSCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHhcccccCCCCCEEEEeCccccCCHHHHHHHHHHHHHHHHcCCCEEEEEEcCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 9999 9999999999999999999999999999863 3 799999999999999999999999999987653
|
| >1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-60 Score=403.56 Aligned_cols=218 Identities=23% Similarity=0.373 Sum_probs=185.2
Q ss_pred CCcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCC
Q 035832 13 CDYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPE 92 (245)
Q Consensus 13 ~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 92 (245)
+..+||+++||+++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+. .
T Consensus 2 ~~~~~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~---~ 76 (240)
T 1ji0_A 2 VSDIVLEVQSLHVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPA---H 76 (240)
T ss_dssp CCSEEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCH---H
T ss_pred CCCceEEEEeEEEEECC--eeEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCceEEECCEECCCCCH---H
Confidence 34568999999999964 579999999999999999999999999999999999999999999999998743211 0
Q ss_pred CCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcC-CCCccCCCCCCCCChHHHHHHHH
Q 035832 93 PLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVG-LDGTSLDKDPHSLSGGYKRRLAL 171 (245)
Q Consensus 93 ~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-l~~~~~~~~~~~LSgGqkqrv~i 171 (245)
..+++++||+||++. +++.+||.||+.++..... . .....+.+.++++.++ +.+. .++++.+|||||||||+|
T Consensus 77 ~~~~~~i~~v~q~~~-l~~~ltv~enl~~~~~~~~-~---~~~~~~~~~~~l~~~~~l~~~-~~~~~~~LSgGq~qrv~l 150 (240)
T 1ji0_A 77 VINRMGIALVPEGRR-IFPELTVYENLMMGAYNRK-D---KEGIKRDLEWIFSLFPRLKER-LKQLGGTLSGGEQQMLAI 150 (240)
T ss_dssp HHHHTTEEEECSSCC-CCTTSBHHHHHHGGGTTCC-C---SSHHHHHHHHHHHHCHHHHTT-TTSBSSSSCHHHHHHHHH
T ss_pred HHHhCCEEEEecCCc-cCCCCcHHHHHHHhhhcCC-C---HHHHHHHHHHHHHHcccHhhH-hcCChhhCCHHHHHHHHH
Confidence 011345999999984 6777899999998631111 1 1122345678899994 8765 699999999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-cCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 172 AIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLK-KELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 172 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||||+.+|++|||||||+|||+.+++.++++|++++ +++|||++|||++++..+||++++|++|+++..+
T Consensus 151 AraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g 221 (240)
T 1ji0_A 151 GRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEG 221 (240)
T ss_dssp HHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHcCCCEEEEcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEc
Confidence 999999999999999999999999999999999986 4689999999999999999999999999998754
|
| >1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-60 Score=407.89 Aligned_cols=220 Identities=23% Similarity=0.378 Sum_probs=186.6
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
++||+++||+++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+. ...
T Consensus 5 ~~~l~i~~l~~~y~~--~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~---~~~ 79 (257)
T 1g6h_A 5 MEILRTENIVKYFGE--FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEP---AEL 79 (257)
T ss_dssp CEEEEEEEEEEEETT--EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCH---HHH
T ss_pred CcEEEEeeeEEEECC--EeeEeeeEEEEeCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECCEECCCCCH---HHH
Confidence 457999999999964 569999999999999999999999999999999999999999999999998743211 001
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCC-CCCch---------hHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPR-QSGSI---------QLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGG 164 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~-~~~~~---------~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG 164 (245)
.++++||+||++. +++.+||.||+.++... ..... .......+++.++++.+|+++. .++++.+||||
T Consensus 80 ~~~~i~~v~q~~~-l~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgG 157 (257)
T 1g6h_A 80 YHYGIVRTFQTPQ-PLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHL-YDRKAGELSGG 157 (257)
T ss_dssp HHHTEEECCCCCG-GGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGG-TTSBGGGSCHH
T ss_pred HhCCEEEEccCCc-cCCCCcHHHHHHHHHhhhccCcccccccccccCCHHHHHHHHHHHHHHcCCchh-hCCCchhCCHH
Confidence 2356999999984 66778999999986321 11100 0012234567889999999875 79999999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 165 YKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 165 qkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|||||+|||||+.+|++|||||||+|||+.+++.++++|+++++ ++|||++|||++++..+||++++|++|+++.++
T Consensus 158 qkQrv~iAraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g 235 (257)
T 1g6h_A 158 QMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEG 235 (257)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHCCCEEEEEecCHHHHHHhCCEEEEEECCEEEEEe
Confidence 99999999999999999999999999999999999999999865 689999999999999999999999999998764
|
| >2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.2e-59 Score=419.42 Aligned_cols=212 Identities=31% Similarity=0.447 Sum_probs=187.0
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
+|+++||+++|++ +++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...+. .+
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~------~~ 74 (359)
T 2yyz_A 3 SIRVVNLKKYFGK--VKAVDGVSFEVKDGEFVALLGPSGCGKTTTLLMLAGIYKPTSGEIYFDDVLVNDIPP------KY 74 (359)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG------GG
T ss_pred EEEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEEcCCCchHHHHHHHHHCCCCCCccEEEECCEECCCCCh------hh
Confidence 6999999999964 569999999999999999999999999999999999999999999999998854321 14
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
+++|||||++. +|+.+||+||+.|+.... .. ...+..+++.++++.++|.+. +++++.+|||||||||+|||||+
T Consensus 75 r~ig~v~Q~~~-l~~~ltv~eni~~~~~~~-~~--~~~~~~~~v~~~l~~~~L~~~-~~r~~~~LSgGq~QRvalArAL~ 149 (359)
T 2yyz_A 75 REVGMVFQNYA-LYPHMTVFENIAFPLRAR-RI--SKDEVEKRVVEIARKLLIDNL-LDRKPTQLSGGQQQRVALARALV 149 (359)
T ss_dssp TTEEEECSSCC-CCTTSCHHHHHHGGGSSS-CS--HHHHTTHHHHHHHHHTTCGGG-TTSCGGGSCHHHHHHHHHHHHHT
T ss_pred CcEEEEecCcc-cCCCCCHHHHHHHHHHhc-CC--CHHHHHHHHHHHHHHcCCchH-hcCChhhCCHHHHHHHHHHHHHH
Confidence 67999999984 778899999999974321 11 122334568899999999875 79999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
.+|++|||||||++||+..++.+++.|+++.+ +.|+|++|||++++..+||++++|++|+++..+
T Consensus 150 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g 216 (359)
T 2yyz_A 150 KQPKVLLFDEPLSNLDANLRMIMRAEIKHLQQELGITSVYVTHDQAEAMTMASRIAVFNQGKLVQYG 216 (359)
T ss_dssp TCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred cCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999853 689999999999999999999999999998654
|
| >1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-60 Score=406.61 Aligned_cols=221 Identities=29% Similarity=0.389 Sum_probs=185.1
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCC---------
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDG--------- 85 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~--------- 85 (245)
.+||+++||+++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++..
T Consensus 4 ~~~l~i~~l~~~y~~--~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLlk~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 81 (262)
T 1b0u_A 4 ENKLHVIDLHKRYGG--HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLK 81 (262)
T ss_dssp -CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEE
T ss_pred CceEEEeeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEcccccccccccc
Confidence 457999999999964 579999999999999999999999999999999999999999999999988741
Q ss_pred -CCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChH
Q 035832 86 -EPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGG 164 (245)
Q Consensus 86 -~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG 164 (245)
.+... ....++++|||||++. +++.+||+||+.++....... ......+++.++++.+|+.+..+++++.+||||
T Consensus 82 ~~~~~~-~~~~~~~i~~v~Q~~~-l~~~ltv~e~l~~~~~~~~~~--~~~~~~~~~~~~l~~~~L~~~~~~~~~~~LSgG 157 (262)
T 1b0u_A 82 VADKNQ-LRLLRTRLTMVFQHFN-LWSHMTVLENVMEAPIQVLGL--SKHDARERALKYLAKVGIDERAQGKYPVHLSGG 157 (262)
T ss_dssp ESCHHH-HHHHHHHEEEECSSCC-CCTTSCHHHHHHHHHHHTTCC--CHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHH
T ss_pred ccChhh-HHHHhcceEEEecCcc-cCCCCcHHHHHHhhHHHhcCC--CHHHHHHHHHHHHHHcCCCchhhcCCcccCCHH
Confidence 00000 0012457999999974 677889999998852111111 122334567889999999863159999999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 165 YKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 165 qkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|||||+|||||+.+|++|||||||+|||+.+++.++++|+++++ +.|||++|||++++..+||++++|++|+++..+
T Consensus 158 q~qRv~lAraL~~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~i~~~g 235 (262)
T 1b0u_A 158 QQQRVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEG 235 (262)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 99999999999999999999999999999999999999999864 689999999999999999999999999998764
|
| >2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-59 Score=419.12 Aligned_cols=212 Identities=31% Similarity=0.458 Sum_probs=186.7
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
+|+++|++++|++ +++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...+. .+
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~------~~ 74 (362)
T 2it1_A 3 EIKLENIVKKFGN--FTALNNINLKIKDGEFMALLGPSGSGKSTLLYTIAGIYKPTSGKIYFDEKDVTELPP------KD 74 (362)
T ss_dssp CEEEEEEEEESSS--SEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG------GG
T ss_pred EEEEEeEEEEECC--EEEEEeeEEEECCCCEEEEECCCCchHHHHHHHHhcCCCCCceEEEECCEECCcCCH------hH
Confidence 5999999999964 469999999999999999999999999999999999999999999999998854321 13
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
++||||||++. +|+.+||+||+.|+...... ...+..+++.++++.++|.+. +++++.+|||||||||+|||||+
T Consensus 75 r~ig~v~Q~~~-l~~~ltv~eni~~~~~~~~~---~~~~~~~~v~~~l~~~~L~~~-~~r~~~~LSGGq~QRvalArAL~ 149 (362)
T 2it1_A 75 RNVGLVFQNWA-LYPHMTVYKNIAFPLELRKA---PREEIDKKVREVAKMLHIDKL-LNRYPWQLSGGQQQRVAIARALV 149 (362)
T ss_dssp TTEEEECTTCC-CCTTSCHHHHHHHHHHHTTC---CHHHHHHHHHHHHHHTTCTTC-TTCCGGGSCHHHHHHHHHHHHHT
T ss_pred CcEEEEecCcc-cCCCCCHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHcCCchH-hhCChhhCCHHHHHHHHHHHHHH
Confidence 67999999985 77889999999987321111 123345578899999999885 79999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
.+|++|||||||++||+..+.++++.|+++.+ +.|+|+||||++++..+||++++|++|+++..+
T Consensus 150 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g 216 (362)
T 2it1_A 150 KEPEVLLLDEPLSNLDALLRLEVRAELKRLQKELGITTVYVTHDQAEALAMADRIAVIREGEILQVG 216 (362)
T ss_dssp TCCSEEEEESGGGGSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHHHhCCCEEEEECCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 99999999999999999999999999999853 689999999999999999999999999998654
|
| >1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-59 Score=418.80 Aligned_cols=213 Identities=27% Similarity=0.425 Sum_probs=182.7
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
.+|+++||+++|++ +++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...+. .
T Consensus 10 ~~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~------~ 81 (372)
T 1v43_A 10 VEVKLENLTKRFGN--FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPP------K 81 (372)
T ss_dssp CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG------G
T ss_pred eeEEEEEEEEEECC--EEEEeeeEEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCCCCh------h
Confidence 36999999999964 569999999999999999999999999999999999999999999999998754321 1
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
+++||||||++. +|+.+||+||+.|+...... ......+++.++++.++|.+. +++++.+|||||||||+|||||
T Consensus 82 ~r~ig~v~Q~~~-l~~~ltv~eni~~~~~~~~~---~~~~~~~~v~~~l~~~~L~~~-~~r~~~~LSGGq~QRvalArAL 156 (372)
T 1v43_A 82 DRNISMVFQSYA-VWPHMTVYENIAFPLKIKKF---PKDEIDKRVRWAAELLQIEEL-LNRYPAQLSGGQRQRVAVARAI 156 (372)
T ss_dssp GGTEEEEEC-------CCCHHHHHHTTCC--CC---CHHHHHHHHHHHHHHTTCGGG-TTSCTTTCCSSCHHHHHHHHHH
T ss_pred hCcEEEEecCcc-cCCCCCHHHHHHHHHHhcCC---CHHHHHHHHHHHHHHcCChhH-hcCChhhCCHHHHHHHHHHHHH
Confidence 467999999984 77889999999997432111 123345578899999999875 7999999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+.+|++|||||||++||+..++++++.|+++.+ +.|+|++|||++++..+||++++|++|+++..+
T Consensus 157 ~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g 224 (372)
T 1v43_A 157 VVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIG 224 (372)
T ss_dssp TTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred hcCCCEEEEcCCCccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999853 689999999999999999999999999998654
|
| >1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-59 Score=402.99 Aligned_cols=217 Identities=29% Similarity=0.363 Sum_probs=185.2
Q ss_pred CCcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCC
Q 035832 13 CDYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPE 92 (245)
Q Consensus 13 ~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~ 92 (245)
+-+++|+++||+++|++ +++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++....
T Consensus 11 ~~~~~l~i~~l~~~y~~--~~vl~~vsl~i~~Gei~~l~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~----- 83 (256)
T 1vpl_A 11 HHMGAVVVKDLRKRIGK--KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEP----- 83 (256)
T ss_dssp ---CCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCH-----
T ss_pred ccCCeEEEEEEEEEECC--EEEEEeeEEEEcCCcEEEEECCCCCCHHHHHHHHhcCCCCCceEEEECCEECCccH-----
Confidence 44668999999999964 57999999999999999999999999999999999999999999999999874311
Q ss_pred CCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHH
Q 035832 93 PLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALA 172 (245)
Q Consensus 93 ~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iA 172 (245)
..+++++||+||++. +++.+||+||+.++.... .. ......+++.++++.+|+.+. .++++.+|||||||||+||
T Consensus 84 ~~~~~~i~~v~q~~~-l~~~ltv~enl~~~~~~~-~~--~~~~~~~~~~~~l~~~gL~~~-~~~~~~~LSgGq~qRv~lA 158 (256)
T 1vpl_A 84 HEVRKLISYLPEEAG-AYRNMQGIEYLRFVAGFY-AS--SSSEIEEMVERATEIAGLGEK-IKDRVSTYSKGMVRKLLIA 158 (256)
T ss_dssp HHHHTTEEEECTTCC-CCTTSBHHHHHHHHHHHH-CC--CHHHHHHHHHHHHHHHCCGGG-GGSBGGGCCHHHHHHHHHH
T ss_pred HHHhhcEEEEcCCCC-CCCCCcHHHHHHHHHHHc-CC--ChHHHHHHHHHHHHHCCCchH-hcCChhhCCHHHHHHHHHH
Confidence 112467999999985 667789999998752110 00 112234567889999999875 6999999999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 173 IQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 173 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|||+.+|++|||||||+|||+.+++.++++|+++++ +.|||++|||++++..+||++++|++|+++..+
T Consensus 159 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tiiivtHd~~~~~~~~d~v~~l~~G~i~~~g 228 (256)
T 1vpl_A 159 RALMVNPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETG 228 (256)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEE
T ss_pred HHHHcCCCEEEEeCCccccCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHHHHHCCEEEEEECCEEEEec
Confidence 999999999999999999999999999999999864 689999999999999999999999999998754
|
| >1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.9e-59 Score=418.39 Aligned_cols=217 Identities=28% Similarity=0.398 Sum_probs=187.3
Q ss_pred eEEEEeEEEECCCCccc--eeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVD--ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~--il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
||+++||+++|++ ++ +|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++........ ..
T Consensus 3 ~l~i~~l~~~y~~--~~~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~i~~~~~~~~-~~ 79 (353)
T 1oxx_K 3 RIIVKNVSKVFKK--GKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLIV-PP 79 (353)
T ss_dssp CEEEEEEEEEEGG--GTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEESS-CG
T ss_pred EEEEEeEEEEECC--EeeeeEeceEEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCceEEEECCEECcccccccC-Ch
Confidence 6999999999963 56 9999999999999999999999999999999999999999999999998743110000 11
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
.++++|||||++. +|+.+||+||+.|+...... ......+++.++++.++|.+. +++++.+|||||||||+||||
T Consensus 80 ~~r~ig~v~Q~~~-l~~~ltv~eni~~~~~~~~~---~~~~~~~~v~~~l~~~~L~~~-~~~~~~~LSGGq~QRvalAra 154 (353)
T 1oxx_K 80 EDRKIGMVFQTWA-LYPNLTAFENIAFPLTNMKM---SKEEIRKRVEEVAKILDIHHV-LNHFPRELSGAQQQRVALARA 154 (353)
T ss_dssp GGSCEEEEETTSC-CCTTSCHHHHHHGGGTTSSC---CHHHHHHHHHHHHHHTTCGGG-TTSCGGGSCHHHHHHHHHHHH
T ss_pred hhCCEEEEeCCCc-cCCCCCHHHHHHHHHHHcCC---CHHHHHHHHHHHHHHcCCchH-hcCChhhCCHHHHHHHHHHHH
Confidence 2467999999984 77889999999997432111 123345578899999999875 799999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-c-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLK-K-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|+.+|++|||||||++||+..++++++.|+++. + +.|+|++|||++++..+||++++|++|+++..+
T Consensus 155 L~~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~~~~~adri~vl~~G~i~~~g 223 (353)
T 1oxx_K 155 LVKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVG 223 (353)
T ss_dssp HTTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred HHhCCCEEEEECCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEc
Confidence 999999999999999999999999999999985 3 689999999999999999999999999998754
|
| >1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-59 Score=418.96 Aligned_cols=218 Identities=27% Similarity=0.404 Sum_probs=186.5
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
+|+++||+++|++ +++|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|+++|+++............+
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~i~g~~~~~~~~~~~~~~~~ 80 (372)
T 1g29_1 3 GVRLVDVWKVFGE--VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPKD 80 (372)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGGG
T ss_pred EEEEEeEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCcHHHHHHHHHHcCCCCCccEEEECCEECccccccccCCHhH
Confidence 6999999999964 56999999999999999999999999999999999999999999999999874310000000124
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
++||||||++. +|+.+||+||+.|+...... ...+..+++.++++.++|.+. +++++.+|||||||||+|||||+
T Consensus 81 r~ig~v~Q~~~-l~~~ltv~eni~~~~~~~~~---~~~~~~~~v~~~l~~~~L~~~-~~r~~~~LSGGq~QRvalArAL~ 155 (372)
T 1g29_1 81 RDIAMVFQSYA-LYPHMTVYDNIAFPLKLRKV---PRQEIDQRVREVAELLGLTEL-LNRKPRELSGGQRQRVALGRAIV 155 (372)
T ss_dssp SSEEEECSCCC-CCTTSCHHHHHHHHHHHTTC---CHHHHHHHHHHHHHHHTCGGG-TTCCGGGSCHHHHHHHHHHHHHH
T ss_pred CCEEEEeCCCc-cCCCCCHHHHHHHHHHHcCC---CHHHHHHHHHHHHHHCCCchH-hcCCcccCCHHHHHHHHHHHHHh
Confidence 67999999985 77889999999987321111 123345578899999999875 79999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
.+|++|||||||++||+..++++++.|+++.+ +.|+|+||||++++..+||++++|++|+++..+
T Consensus 156 ~~P~lLLLDEP~s~LD~~~r~~l~~~l~~l~~~~g~tvi~vTHd~~~a~~~adri~vl~~G~i~~~g 222 (372)
T 1g29_1 156 RKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVG 222 (372)
T ss_dssp TCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred cCCCEEEECCCCccCCHHHHHHHHHHHHHHHHhcCCEEEEECCCHHHHHHhCCEEEEEeCCEEEEeC
Confidence 99999999999999999999999999999853 689999999999999999999999999998754
|
| >2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-58 Score=393.24 Aligned_cols=207 Identities=29% Similarity=0.449 Sum_probs=181.6
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
||+++|++++|++ +|+|+||+|++ |+++|+||||||||||+|+|+|+++|++|+|.++|+++.... ..+
T Consensus 1 ml~~~~l~~~y~~----~l~~isl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~------~~~ 69 (240)
T 2onk_A 1 MFLKVRAEKRLGN----FRLNVDFEMGR-DYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLP------PER 69 (240)
T ss_dssp CCEEEEEEEEETT----EEEEEEEEECS-SEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSC------TTT
T ss_pred CEEEEEEEEEeCC----EEeeeEEEECC-EEEEEECCCCCCHHHHHHHHhCCCCCCceEEEECCEECCcCc------hhh
Confidence 4899999999953 49999999999 999999999999999999999999999999999999875321 124
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
+++||+||++. +++.+||+||+.++... .. . .. ..+++.++++.+|+.+. .++++.+|||||||||+|||||+
T Consensus 70 ~~i~~v~q~~~-l~~~ltv~enl~~~~~~-~~-~--~~-~~~~~~~~l~~~~l~~~-~~~~~~~LSgGqkqRv~lAral~ 142 (240)
T 2onk_A 70 RGIGFVPQDYA-LFPHLSVYRNIAYGLRN-VE-R--VE-RDRRVREMAEKLGIAHL-LDRKPARLSGGERQRVALARALV 142 (240)
T ss_dssp SCCBCCCSSCC-CCTTSCHHHHHHTTCTT-SC-H--HH-HHHHHHHHHHTTTCTTT-TTCCGGGSCHHHHHHHHHHHHHT
T ss_pred CcEEEEcCCCc-cCCCCcHHHHHHHHHHH-cC-C--ch-HHHHHHHHHHHcCCHHH-hcCChhhCCHHHHHHHHHHHHHH
Confidence 67999999984 67778999999986321 11 1 11 24567889999999875 79999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-c-CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLK-K-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
.+|++|||||||+|||+.+++.++++|++++ + ++|||++|||++++..+||++++|++|+++..+
T Consensus 143 ~~p~lllLDEPts~LD~~~~~~~~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~i~~l~~G~i~~~g 209 (240)
T 2onk_A 143 IQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKG 209 (240)
T ss_dssp TCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred cCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999985 3 789999999999999999999999999998754
|
| >3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=7.8e-59 Score=414.56 Aligned_cols=208 Identities=28% Similarity=0.434 Sum_probs=183.2
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
||+++||+++|++ + +|+|+||+|++||+++|+||||||||||||+|+|+++|++|+|.++|+++...+ ..+
T Consensus 1 ml~~~~l~~~y~~--~-~l~~vsl~i~~Ge~~~llGpnGsGKSTLLr~iaGl~~p~~G~I~~~g~~i~~~~------~~~ 71 (348)
T 3d31_A 1 MIEIESLSRKWKN--F-SLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLS------PEK 71 (348)
T ss_dssp CEEEEEEEEECSS--C-EEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSC------HHH
T ss_pred CEEEEEEEEEECC--E-EEeeeEEEEcCCCEEEEECCCCccHHHHHHHHHcCCCCCCcEEEECCEECCCCc------hhh
Confidence 5899999999964 4 899999999999999999999999999999999999999999999999875321 124
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
++||||||++. +|+.+||+||+.|+....... . . +++.++++.++|++. +++++.+|||||||||+|||||+
T Consensus 72 r~ig~v~Q~~~-l~~~ltv~enl~~~~~~~~~~---~-~--~~v~~~l~~~~L~~~-~~~~~~~LSgGq~QRvalAraL~ 143 (348)
T 3d31_A 72 HDIAFVYQNYS-LFPHMNVKKNLEFGMRMKKIK---D-P--KRVLDTARDLKIEHL-LDRNPLTLSGGEQQRVALARALV 143 (348)
T ss_dssp HTCEEECTTCC-CCTTSCHHHHHHHHHHHHCCC---C-H--HHHHHHHHHTTCTTT-TTSCGGGSCHHHHHHHHHHHHTT
T ss_pred CcEEEEecCcc-cCCCCCHHHHHHHHHHHcCCC---H-H--HHHHHHHHHcCCchH-hcCChhhCCHHHHHHHHHHHHHH
Confidence 57999999984 778899999999863210000 1 1 467889999999885 79999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
.+|++|||||||++||+..++++++.|+++.+ +.|+|++|||++++..+||++++|++|+++..+
T Consensus 144 ~~P~lLLLDEP~s~LD~~~~~~l~~~l~~l~~~~g~tii~vTHd~~~~~~~adri~vl~~G~i~~~g 210 (348)
T 3d31_A 144 TNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVG 210 (348)
T ss_dssp SCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEE
T ss_pred cCCCEEEEECccccCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999853 689999999999999999999999999998654
|
| >2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-58 Score=400.42 Aligned_cols=213 Identities=37% Similarity=0.557 Sum_probs=183.3
Q ss_pred eEEEEeEEEECCCCc---cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQ---VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~---~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
||+++||+++|+.+. +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...
T Consensus 2 ~l~~~~l~~~y~~~~~~~~~vl~~vsl~i~~Ge~~~liG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g~~~~~~------- 74 (266)
T 2yz2_A 2 RIEVVNVSHIFHRGTPLEKKALENVSLVINEGECLLVAGNTGSGKSTLLQIVAGLIEPTSGDVLYDGERKKGY------- 74 (266)
T ss_dssp CEEEEEEEEEESTTSTTCEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECCHH-------
T ss_pred EEEEEEEEEEecCCCccccceeeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCcEEEECCEECchH-------
Confidence 699999999996212 4699999999999999999999999999999999999999999999999886421
Q ss_pred CCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCC--CccCCCCCCCCChHHHHHHHH
Q 035832 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLD--GTSLDKDPHSLSGGYKRRLAL 171 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~--~~~~~~~~~~LSgGqkqrv~i 171 (245)
.+++++||+||++...++..||.||+.++.... .. .....+++.++++.+|+. +. .++++.+|||||||||+|
T Consensus 75 ~~~~~i~~v~q~~~~~~~~~tv~enl~~~~~~~-~~---~~~~~~~~~~~l~~~gl~~~~~-~~~~~~~LSgGq~qRv~l 149 (266)
T 2yz2_A 75 EIRRNIGIAFQYPEDQFFAERVFDEVAFAVKNF-YP---DRDPVPLVKKAMEFVGLDFDSF-KDRVPFFLSGGEKRRVAI 149 (266)
T ss_dssp HHGGGEEEECSSGGGGCCCSSHHHHHHHTTTTT-CT---TSCSHHHHHHHHHHTTCCHHHH-TTCCGGGSCHHHHHHHHH
T ss_pred HhhhhEEEEeccchhhcCCCcHHHHHHHHHHhc-CC---HHHHHHHHHHHHHHcCcCCccc-ccCChhhCCHHHHHHHHH
Confidence 124679999999633456789999999863221 11 111234577889999998 75 799999999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-cCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 172 AIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLK-KELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 172 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||||+.+|++|||||||+|||+.+++.++++|++++ ++.|||++|||++++..+||++++|++|+++..+
T Consensus 150 AraL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tii~vtHd~~~~~~~~d~v~~l~~G~i~~~g 220 (266)
T 2yz2_A 150 ASVIVHEPDILILDEPLVGLDREGKTDLLRIVEKWKTLGKTVILISHDIETVINHVDRVVVLEKGKKVFDG 220 (266)
T ss_dssp HHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCTTTGGGCSEEEEEETTEEEEEE
T ss_pred HHHHHcCCCEEEEcCccccCCHHHHHHHHHHHHHHHHcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 999999999999999999999999999999999986 4689999999999999999999999999998654
|
| >2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-58 Score=402.06 Aligned_cols=221 Identities=26% Similarity=0.401 Sum_probs=183.2
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCC--CCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNND--GEPNNSP 91 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~--~~~~~~~ 91 (245)
..++|+++||+++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++. ....
T Consensus 18 ~~~~l~~~~l~~~y~~--~~vL~~isl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~~~~~~~--- 92 (279)
T 2ihy_A 18 SHMLIQLDQIGRMKQG--KTILKKISWQIAKGDKWILYGLNGAGKTTLLNILNAYEPATSGTVNLFGKMPGKVGYSA--- 92 (279)
T ss_dssp -CEEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTBCCC---CCH---
T ss_pred CCceEEEEeEEEEECC--EEEEEeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCCeEEEECCEEcccccCCH---
Confidence 3457999999999964 57999999999999999999999999999999999999999999999998874 2110
Q ss_pred CCCCCCcEEEEecCCCCCCC-cccHHHHHHhcCCCCCCch-hHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHH
Q 035832 92 EPLPPEKVGIVFQFPERYFV-ADNVLDEVIFGWPRQSGSI-QLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRL 169 (245)
Q Consensus 92 ~~~~~~~i~~v~Q~~~~~~~-~~tv~e~l~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv 169 (245)
..++++|||+||++...+. .+||+||+.++........ .......+++.++++.+|+.+. +++++.+|||||||||
T Consensus 93 -~~~~~~i~~v~Q~~~~~~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~~LSgGqkqRv 170 (279)
T 2ihy_A 93 -ETVRQHIGFVSHSLLEKFQEGERVIDVVISGAFKSIGVYQDIDDEIRNEAHQLLKLVGMSAK-AQQYIGYLSTGEKQRV 170 (279)
T ss_dssp -HHHHTTEEEECHHHHTTSCTTSBHHHHHHTTC---------CCHHHHHHHHHHHHHTTCGGG-TTSBGGGSCHHHHHHH
T ss_pred -HHHcCcEEEEEcCcccccCCCCCHHHHHHhhhhhccccccCCcHHHHHHHHHHHHHcCChhH-hcCChhhCCHHHHHHH
Confidence 1124679999999743232 4699999998632100000 0012234567889999999875 7999999999999999
Q ss_pred HHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceE--EEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 170 ALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTI--LVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 170 ~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~ti--ii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+|||||+.+|++|||||||+|||+.+++.++++|+++++ ++|| |++|||++++..+||++++|++|+++..+
T Consensus 171 ~lAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tv~~iivtHd~~~~~~~~d~v~~l~~G~i~~~g 245 (279)
T 2ihy_A 171 MIARALMGQPQVLILDEPAAGLDFIARESLLSILDSLSDSYPTLAMIYVTHFIEEITANFSKILLLKDGQSIQQG 245 (279)
T ss_dssp HHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHCTTCEEEEEESCGGGCCTTCCEEEEEETTEEEEEE
T ss_pred HHHHHHhCCCCEEEEeCCccccCHHHHHHHHHHHHHHHHCCCEEEEEEEecCHHHHHHhCCEEEEEECCEEEEEC
Confidence 999999999999999999999999999999999999864 7899 99999999999999999999999998754
|
| >2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.6e-58 Score=395.78 Aligned_cols=219 Identities=26% Similarity=0.368 Sum_probs=180.6
Q ss_pred cceEEEEeEEEECCC-CccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPG-TQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~-~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
..+|+++||+++|++ ..+++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++..... .
T Consensus 14 ~~~l~~~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLlk~l~Gl~~p~~G~I~~~g~~i~~~~~----~ 89 (271)
T 2ixe_A 14 KGLVKFQDVSFAYPNHPNVQVLQGLTFTLYPGKVTALVGPNGSGKSTVAALLQNLYQPTGGKVLLDGEPLVQYDH----H 89 (271)
T ss_dssp CCCEEEEEEEECCTTCTTSCCEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCH----H
T ss_pred CceEEEEEEEEEeCCCCCceeeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEcccCCH----H
Confidence 347999999999964 12469999999999999999999999999999999999999999999999998743211 1
Q ss_pred CCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhH-HHHHHHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHH
Q 035832 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQL-KEYLALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLA 170 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~ 170 (245)
.++++||||||++. +|. .||+||+.++.......... .......+.++++.+ |+... .++++.+|||||||||+
T Consensus 90 ~~~~~i~~v~Q~~~-l~~-~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~gl~~~-~~~~~~~LSgGq~QRv~ 166 (271)
T 2ixe_A 90 YLHTQVAAVGQEPL-LFG-RSFRENIAYGLTRTPTMEEITAVAMESGAHDFISGFPQGYDTE-VGETGNQLSGGQRQAVA 166 (271)
T ss_dssp HHHHHEEEECSSCC-CCS-SBHHHHHHTTCSSCCCHHHHHHHHHHHTCHHHHHHSTTGGGSB-CCGGGTTSCHHHHHHHH
T ss_pred HHhccEEEEecCCc-ccc-ccHHHHHhhhcccCChHHHHHHHHHHHhHHHHHHhhhcchhhh-hcCCcCCCCHHHHHHHH
Confidence 12457999999984 454 69999999874321110111 111123356778888 78765 68999999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 171 LAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 171 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|||||+.+|++|||||||+|||+.+++.++++|+++.+ ++|||+||||++++. .||++++|++|+++..+
T Consensus 167 lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~g~tviivtHd~~~~~-~~d~v~~l~~G~i~~~g 238 (271)
T 2ixe_A 167 LARALIRKPRLLILDNATSALDAGNQLRVQRLLYESPEWASRTVLLITQQLSLAE-RAHHILFLKEGSVCEQG 238 (271)
T ss_dssp HHHHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHHCTTTTTSEEEEECSCHHHHT-TCSEEEEEETTEEEEEE
T ss_pred HHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHHhhcCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999854 689999999999886 59999999999998754
|
| >2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.4e-57 Score=388.07 Aligned_cols=208 Identities=25% Similarity=0.398 Sum_probs=172.0
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
-|+++||+++|+++.+++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++..... ..++
T Consensus 7 ~~~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~i~g~~~~~~~~----~~~~ 82 (247)
T 2ff7_A 7 DITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADP----NWLR 82 (247)
T ss_dssp EEEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCH----HHHH
T ss_pred ceeEEEEEEEeCCCCcceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCH----HHHH
Confidence 489999999994223569999999999999999999999999999999999999999999999998753211 1124
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCC-----------CCccCCCCCCCCChHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGL-----------DGTSLDKDPHSLSGGY 165 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l-----------~~~~~~~~~~~LSgGq 165 (245)
++|||+||++. +| ..||+||+.++... .. . +++.++++.+++ +.. .++++.+|||||
T Consensus 83 ~~i~~v~Q~~~-l~-~~tv~enl~~~~~~--~~---~----~~~~~~l~~~~l~~~~~~~~~gl~~~-~~~~~~~LSgGq 150 (247)
T 2ff7_A 83 RQVGVVLQDNV-LL-NRSIIDNISLANPG--MS---V----EKVIYAAKLAGAHDFISELREGYNTI-VGEQGAGLSGGQ 150 (247)
T ss_dssp HHEEEECSSCC-CT-TSBHHHHHTTTCTT--CC---H----HHHHHHHHHHTCHHHHHTSTTGGGCB-CSTTTTCCCHHH
T ss_pred hcEEEEeCCCc-cc-cccHHHHHhccCCC--CC---H----HHHHHHHHHhChHHHHHhCcchhhhh-hhCCCCCCCHHH
Confidence 57999999985 44 46999999986321 11 1 123334444444 332 466789999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 166 KRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 166 kqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||||+|||||+.+|++|||||||+|||+.+++.++++|+++.+++|||++|||++.+. .||++++|++|+++..+
T Consensus 151 ~qRv~iAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~g~tviivtH~~~~~~-~~d~v~~l~~G~i~~~g 225 (247)
T 2ff7_A 151 RQRIAIARALVNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTVK-NADRIIVMEKGKIVEQG 225 (247)
T ss_dssp HHHHHHHHHHTTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGGT-TSSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHhcCCCEEEEeCCcccCCHHHHHHHHHHHHHHcCCCEEEEEeCCHHHHH-hCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999999999999876799999999999875 59999999999998754
|
| >3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=2.7e-57 Score=398.30 Aligned_cols=217 Identities=25% Similarity=0.362 Sum_probs=177.9
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
..|+++||+|+|+++ .++|+||||+|++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..+
T Consensus 52 ~~i~~~~vs~~y~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~G~~i~~~~~----~~~ 126 (306)
T 3nh6_A 52 GRIEFENVHFSYADG-RETLQDVSFTVMPGQTLALVGPSGAGKSTILRLLFRFYDISSGCIRIDGQDISQVTQ----ASL 126 (306)
T ss_dssp CCEEEEEEEEESSTT-CEEEEEEEEEECTTCEEEEESSSCHHHHHHHHHHTTSSCCSEEEEEETTEETTSBCH----HHH
T ss_pred CeEEEEEEEEEcCCC-CceeeeeeEEEcCCCEEEEECCCCchHHHHHHHHHcCCCCCCcEEEECCEEcccCCH----HHH
Confidence 359999999999643 579999999999999999999999999999999999999999999999999864321 123
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHH-HHHHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKE-YLALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALA 172 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~iA 172 (245)
+++||||||++. +| ..||+||+.++..... ...... .....+.+.++.+ |++.. .++++.+|||||||||+||
T Consensus 127 r~~i~~v~Q~~~-lf-~~Tv~eNi~~~~~~~~-~~~~~~~~~~~~l~~~i~~lp~gl~t~-~~~~g~~LSGGqrQRvaiA 202 (306)
T 3nh6_A 127 RSHIGVVPQDTV-LF-NDTIADNIRYGRVTAG-NDEVEAAAQAAGIHDAIMAFPEGYRTQ-VGERGLKLSGGEKQRVAIA 202 (306)
T ss_dssp HHTEEEECSSCC-CC-SEEHHHHHHTTSTTCC-HHHHHHHHHHHTCHHHHHHSTTGGGCE-ESTTSBCCCHHHHHHHHHH
T ss_pred hcceEEEecCCc-cC-cccHHHHHHhhcccCC-HHHHHHHHHHhCcHHHHHhccchhhhH-hcCCcCCCCHHHHHHHHHH
Confidence 567999999984 44 6799999999743211 100000 0111123334443 55543 5788899999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 173 IQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 173 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
|||+.+|++|||||||++||+.+...+++.|+++.+++|+|+|||+++.+.. ||+|++|++|+++..+.
T Consensus 203 RAL~~~p~iLlLDEPts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~~-aD~i~vl~~G~iv~~G~ 271 (306)
T 3nh6_A 203 RTILKAPGIILLDEATSALDTSNERAIQASLAKVCANRTTIVVAHRLSTVVN-ADQILVIKDGCIVERGR 271 (306)
T ss_dssp HHHHHCCSEEEEECCSSCCCHHHHHHHHHHHHHHHTTSEEEEECCSHHHHHT-CSEEEEEETTEEEEEEC
T ss_pred HHHHhCCCEEEEECCcccCCHHHHHHHHHHHHHHcCCCEEEEEEcChHHHHc-CCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999878999999999999876 99999999999987653
|
| >2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-56 Score=384.73 Aligned_cols=205 Identities=24% Similarity=0.406 Sum_probs=176.1
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
+||+++|++++|++ .+++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.+
T Consensus 3 ~~l~i~~l~~~y~~-~~~vl~~isl~i~~Ge~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~I~~----------------- 64 (253)
T 2nq2_C 3 KALSVENLGFYYQA-ENFLFQQLNFDLNKGDILAVLGQNGCGKSTLLDLLLGIHRPIQGKIEV----------------- 64 (253)
T ss_dssp EEEEEEEEEEEETT-TTEEEEEEEEEEETTCEEEEECCSSSSHHHHHHHHTTSSCCSEEEEEE-----------------
T ss_pred ceEEEeeEEEEeCC-CCeEEEEEEEEECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEE-----------------
Confidence 37999999999962 246999999999999999999999999999999999999999999982
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCch-hHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSI-QLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~-~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
++++||+||++. +++.+||.||+.++........ .......+++.++++.+|+.+. +++++.+|||||||||+||||
T Consensus 65 ~~~i~~v~q~~~-~~~~~tv~enl~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgGq~qrv~lAra 142 (253)
T 2nq2_C 65 YQSIGFVPQFFS-SPFAYSVLDIVLMGRSTHINTFAKPKSHDYQVAMQALDYLNLTHL-AKREFTSLSGGQRQLILIARA 142 (253)
T ss_dssp CSCEEEECSCCC-CSSCCBHHHHHHGGGGGGSCTTCCCCHHHHHHHHHHHHHTTCGGG-TTSBGGGSCHHHHHHHHHHHH
T ss_pred eccEEEEcCCCc-cCCCCCHHHHHHHhhhhhcccccCCCHHHHHHHHHHHHHcCChHH-hcCChhhCCHHHHHHHHHHHH
Confidence 346999999985 5667899999998632110000 0011224567889999999875 799999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|+.+|++|||||||+|||+.+++.++++|+++++ +.|||++|||++++..+||++++|++|+ +..+
T Consensus 143 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~~g~tvi~vtHd~~~~~~~~d~v~~l~~G~-~~~g 210 (253)
T 2nq2_C 143 IASECKLILLDEPTSALDLANQDIVLSLLIDLAQSQNMTVVFTTHQPNQVVAIANKTLLLNKQN-FKFG 210 (253)
T ss_dssp HHTTCSEEEESSSSTTSCHHHHHHHHHHHHHHHHTSCCEEEEEESCHHHHHHHCSEEEEEETTE-EEEE
T ss_pred HHcCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhCCEEEEEeCCe-EecC
Confidence 9999999999999999999999999999999864 6899999999999999999999999999 6543
|
| >2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=5.2e-58 Score=392.86 Aligned_cols=219 Identities=24% Similarity=0.304 Sum_probs=177.6
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCC--CCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGL--SKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
||+++||+++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|+++...+.. ..
T Consensus 3 ~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~nGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~~~~~~~~---~~ 77 (250)
T 2d2e_A 3 QLEIRDLWASIDG--ETILKGVNLVVPKGEVHALMGPNGAGKSTLGKILAGDPEYTVERGEILLDGENILELSPD---ER 77 (250)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTCTTCEEEEEEEEETTEECTTSCHH---HH
T ss_pred eEEEEeEEEEECC--EEEEeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCceEEEECCEECCCCCHH---HH
Confidence 7999999999964 5799999999999999999999999999999999999 789999999999987532210 01
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCC-CccCCCCCCC-CChHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLD-GTSLDKDPHS-LSGGYKRRLALA 172 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~-LSgGqkqrv~iA 172 (245)
.+..++|+||++. +++.+||.||+.++...............+++.++++.+|++ +. .++++.+ |||||||||+||
T Consensus 78 ~~~~i~~v~q~~~-~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~-~~~~~~~~LSgGqkQrv~iA 155 (250)
T 2d2e_A 78 ARKGLFLAFQYPV-EVPGVTIANFLRLALQAKLGREVGVAEFWTKVKKALELLDWDESY-LSRYLNEGFSGGEKKRNEIL 155 (250)
T ss_dssp HHTTBCCCCCCCC--CCSCBHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHTCCGGG-GGSBTTCC----HHHHHHHH
T ss_pred HhCcEEEeccCCc-cccCCCHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHcCCChhH-hcCCcccCCCHHHHHHHHHH
Confidence 1245899999985 667889999998752100000000112245678899999995 54 6899999 999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhh-ccEEEEEeCCeEEEecc
Q 035832 173 IQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAAL-VDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 173 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~-~d~v~~l~~G~i~~~~~ 242 (245)
|||+.+|++|||||||+|||+.+++.++++|+++++ ++|||++|||++++..+ ||++++|++|+++..+.
T Consensus 156 raL~~~p~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHd~~~~~~~~~d~v~~l~~G~i~~~g~ 227 (250)
T 2d2e_A 156 QLLVLEPTYAVLDETDSGLDIDALKVVARGVNAMRGPNFGALVITHYQRILNYIQPDKVHVMMDGRVVATGG 227 (250)
T ss_dssp HHHHHCCSEEEEECGGGTTCHHHHHHHHHHHHHHCSTTCEEEEECSSSGGGGTSCCSEEEEEETTEEEEEES
T ss_pred HHHHcCCCEEEEeCCCcCCCHHHHHHHHHHHHHHHhcCCEEEEEecCHHHHHHhcCCEEEEEECCEEEEEeC
Confidence 999999999999999999999999999999999864 68999999999999888 59999999999987643
|
| >2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4e-57 Score=390.88 Aligned_cols=230 Identities=21% Similarity=0.253 Sum_probs=180.8
Q ss_pred CCCCccCCcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCC--CCCCcceEEEcCccCC
Q 035832 7 RAGGISCDYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGL--SKPTSGSINIRGYNND 84 (245)
Q Consensus 7 ~~~~~~~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl--~~p~~G~i~~~g~~~~ 84 (245)
.+|-...+.+||+++||+++|++ +++|+|+||+|++||+++|+||||||||||+|+|+|+ ++|++|+|.++|+++.
T Consensus 10 ~~~~~~~~~~~l~~~~l~~~y~~--~~vl~~vsl~i~~Ge~~~l~G~NGsGKSTLlk~l~Gl~~~~p~~G~I~~~g~~i~ 87 (267)
T 2zu0_C 10 SSGLVPRGSHMLSIKDLHVSVED--KAILRGLSLDVHPGEVHAIMGPNGSGKSTLSATLAGREDYEVTGGTVEFKGKDLL 87 (267)
T ss_dssp ----------CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTCTTCEEEEEEEEETTEEGG
T ss_pred cCCCcCCCCceEEEEeEEEEECC--EEEEEeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCCeEEEECCEECC
Confidence 34444455678999999999964 5799999999999999999999999999999999999 4689999999999874
Q ss_pred CCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCC----CCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCC-
Q 035832 85 GEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPR----QSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPH- 159 (245)
Q Consensus 85 ~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~----~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~- 159 (245)
..... ...+..++|+||++. +++.+|+.+|+.+.... ............+++.++++.+|+.....++++.
T Consensus 88 ~~~~~---~~~~~~i~~v~Q~~~-l~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~gl~~~~~~~~~~~ 163 (267)
T 2zu0_C 88 ALSPE---DRAGEGIFMAFQYPV-EIPGVSNQFFLQTALNAVRSYRGQETLDRFDFQDLMEEKIALLKMPEDLLTRSVNV 163 (267)
T ss_dssp GSCHH---HHHHHTEEEECSSCC-CCTTCBHHHHHHHHHHHHHHGGGCCCCCHHHHHHHHHHHHHHTTCCTTTTTSBTTT
T ss_pred cCCHH---HHhhCCEEEEccCcc-ccccccHHHHHHHHHHhhhhhhccccCCHHHHHHHHHHHHHHcCCChhHhcCCccc
Confidence 32110 011235999999985 67788999998764200 0000001122345678899999996323688887
Q ss_pred CCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhh-ccEEEEEeCCeE
Q 035832 160 SLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAAL-VDHSWRMDMGGF 237 (245)
Q Consensus 160 ~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~-~d~v~~l~~G~i 237 (245)
+|||||||||+|||||+.+|++|||||||+|||+.+++.++++|+++++ ++|||++|||++++..+ ||++++|++|++
T Consensus 164 ~LSgGq~QRv~iAraL~~~p~lLlLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~~d~v~~l~~G~i 243 (267)
T 2zu0_C 164 GFSGGEKKRNDILQMAVLEPELCILDESDSGLDIDALKVVADGVNSLRDGKRSFIIVTHYQRILDYIKPDYVHVLYQGRI 243 (267)
T ss_dssp TCCHHHHHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHTTCCSSCEEEEECSSGGGGGTSCCSEEEEEETTEE
T ss_pred CCCHHHHHHHHHHHHHHhCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeeCHHHHHhhcCCEEEEEECCEE
Confidence 5999999999999999999999999999999999999999999999864 68999999999998876 999999999999
Q ss_pred EEecc
Q 035832 238 LVEQR 242 (245)
Q Consensus 238 ~~~~~ 242 (245)
+..+.
T Consensus 244 ~~~g~ 248 (267)
T 2zu0_C 244 VKSGD 248 (267)
T ss_dssp EEEEC
T ss_pred EEEcC
Confidence 87654
|
| >1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=1.2e-56 Score=382.77 Aligned_cols=208 Identities=26% Similarity=0.374 Sum_probs=175.4
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
||+++|++++|++ .+++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+. ..++
T Consensus 1 ml~~~~l~~~y~~-~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~----~~~~ 75 (243)
T 1mv5_A 1 MLSARHVDFAYDD-SEQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISL----ENWR 75 (243)
T ss_dssp CEEEEEEEECSSS-SSCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSC----SCCT
T ss_pred CEEEEEEEEEeCC-CCceEEEeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCcEEEECCEEhhhCCH----HHHH
Confidence 5899999999943 2569999999999999999999999999999999999999999999999998754321 1235
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCC-----------CCCCCCChHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLD-----------KDPHSLSGGY 165 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~-----------~~~~~LSgGq 165 (245)
+++||+||++. +|. .||+||+.++.... .. .+++.++++.+++.+. .+ +++.+|||||
T Consensus 76 ~~i~~v~q~~~-l~~-~tv~enl~~~~~~~-~~-------~~~~~~~l~~~~l~~~-~~~~~~gl~~~~~~~~~~LSgGq 144 (243)
T 1mv5_A 76 SQIGFVSQDSA-IMA-GTIRENLTYGLEGD-YT-------DEDLWQVLDLAFARSF-VENMPDQLNTEVGERGVKISGGQ 144 (243)
T ss_dssp TTCCEECCSSC-CCC-EEHHHHTTSCTTSC-SC-------HHHHHHHHHHHTCTTT-TTSSTTGGGCEESTTSBCCCHHH
T ss_pred hhEEEEcCCCc-ccc-ccHHHHHhhhccCC-CC-------HHHHHHHHHHhChHHH-HHhCccchhchhccCcCcCCHHH
Confidence 67999999984 454 69999999863111 11 1235667778887654 33 4567999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 166 KRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 166 kqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||||+|||||+.+|++|||||||+|||+.+++.+++.|+++.+++|||++|||++.+. .||++++|++|+++..+
T Consensus 145 ~qrv~lAral~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g 219 (243)
T 1mv5_A 145 RQRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIV-DADKIYFIEKGQITGSG 219 (243)
T ss_dssp HHHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHH-HCSEEEEEETTEECCCS
T ss_pred HHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHhcCCCEEEEEeCChHHHH-hCCEEEEEECCEEEEeC
Confidence 9999999999999999999999999999999999999999876789999999999875 69999999999997643
|
| >2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C | Back alignment and structure |
|---|
Probab=100.00 E-value=2.1e-56 Score=382.56 Aligned_cols=205 Identities=25% Similarity=0.341 Sum_probs=179.0
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
+||+++|++++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|+ |+|.++|+++..... ..+
T Consensus 3 ~~l~~~~l~~~------~vl~~vsl~i~~Ge~~~liG~NGsGKSTLlk~l~Gl~~p~-G~i~~~g~~~~~~~~----~~~ 71 (249)
T 2qi9_C 3 IVMQLQDVAES------TRLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMTSGK-GSIQFAGQPLEAWSA----TKL 71 (249)
T ss_dssp EEEEEEEEEET------TTEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCE-EEEEETTEEGGGSCH----HHH
T ss_pred cEEEEEceEEE------EEEeeeEEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-eEEEECCEECCcCCH----HHH
Confidence 37999999986 4799999999999999999999999999999999999999 999999988743211 112
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
++++||+||++. +++.+||+||+.++... .. . .+++.++++.+|+.+. +++++.+|||||||||+|||||
T Consensus 72 ~~~i~~v~q~~~-~~~~~tv~e~l~~~~~~--~~-~-----~~~~~~~l~~~~l~~~-~~~~~~~LSgGq~qrv~lAraL 141 (249)
T 2qi9_C 72 ALHRAYLSQQQT-PPFATPVWHYLTLHQHD--KT-R-----TELLNDVAGALALDDK-LGRSTNQLSGGEWQRVRLAAVV 141 (249)
T ss_dssp HHHEEEECSCCC-CCTTCBHHHHHHTTCSS--TT-C-----HHHHHHHHHHTTCGGG-TTSBGGGCCHHHHHHHHHHHHH
T ss_pred hceEEEECCCCc-cCCCCcHHHHHHHhhcc--CC-c-----HHHHHHHHHHcCChhH-hcCChhhCCHHHHHHHHHHHHH
Confidence 457999999985 56778999999986311 11 1 3457788999999875 7999999999999999999999
Q ss_pred hhCCC-------EEEEeCCCCCCCHHHHHHHHHHHHHhh-cCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 176 VQVPD-------LLILDEPLAGLDWKARADVVKLLKHLK-KELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 176 ~~~p~-------llllDEPts~LD~~~~~~i~~~l~~l~-~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+.+|+ +|||||||+|||+.+++.++++|+++. +++|||++|||++++..+||++++|++|+++..+
T Consensus 142 ~~~p~~~~~~~~lllLDEPts~LD~~~~~~l~~~l~~l~~~g~tviivtHd~~~~~~~~d~v~~l~~G~i~~~g 215 (249)
T 2qi9_C 142 LQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALSQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASG 215 (249)
T ss_dssp HHHCTTTCTTCCEEEESSTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEETTEEEEEE
T ss_pred HcCCCcCCCCCeEEEEECCcccCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEeC
Confidence 99999 999999999999999999999999986 4689999999999999999999999999998754
|
| >2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.7e-55 Score=379.24 Aligned_cols=209 Identities=24% Similarity=0.371 Sum_probs=172.4
Q ss_pred ceEEEEeEEEECCCCc-cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQ-VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~-~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
++|+++||+++|++.. +++|+|+||+|++||+++|+||||||||||+|+|+|+++| +|+|.++|+++...+. ..
T Consensus 16 ~~l~i~~l~~~y~~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~~-~G~I~i~g~~i~~~~~----~~ 90 (260)
T 2ghi_A 16 VNIEFSDVNFSYPKQTNHRTLKSINFFIPSGTTCALVGHTGSGKSTIAKLLYRFYDA-EGDIKIGGKNVNKYNR----NS 90 (260)
T ss_dssp CCEEEEEEEECCTTCCSSCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCC-EEEEEETTEEGGGBCH----HH
T ss_pred CeEEEEEEEEEeCCCCcCceeEeeEEEECCCCEEEEECCCCCCHHHHHHHHhccCCC-CeEEEECCEEhhhcCH----HH
Confidence 4699999999997431 4699999999999999999999999999999999999987 8999999988743211 11
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCc----------cCCCCCCCCChH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGT----------SLDKDPHSLSGG 164 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgG 164 (245)
++++|||+||++. +| ..||+||+.++... .. . +++.++++.+++.+. ..++++.+||||
T Consensus 91 ~~~~i~~v~Q~~~-l~-~~tv~enl~~~~~~--~~---~----~~~~~~l~~~~l~~~~~~l~~~~~~~~~~~~~~LSgG 159 (260)
T 2ghi_A 91 IRSIIGIVPQDTI-LF-NETIKYNILYGKLD--AT---D----EEVIKATKSAQLYDFIEALPKKWDTIVGNKGMKLSGG 159 (260)
T ss_dssp HHTTEEEECSSCC-CC-SEEHHHHHHTTCTT--CC---H----HHHHHHHHHTTCHHHHHTSTTGGGCEESSSSBCCCHH
T ss_pred HhccEEEEcCCCc-cc-ccCHHHHHhccCCC--CC---H----HHHHHHHHHhCCHHHHHhccccccccccCCcCcCCHH
Confidence 2467999999985 44 46999999986321 11 1 123445555554321 135678999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 165 YKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 165 qkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|||||+|||||+.+|++|||||||+|||+.+++.++++|+++.+++|||++|||++.+. .||++++|++|+++..+
T Consensus 160 qkqRv~lAraL~~~p~lllLDEPts~LD~~~~~~i~~~l~~l~~~~tviivtH~~~~~~-~~d~i~~l~~G~i~~~g 235 (260)
T 2ghi_A 160 ERQRIAIARCLLKDPKIVIFDEATSSLDSKTEYLFQKAVEDLRKNRTLIIIAHRLSTIS-SAESIILLNKGKIVEKG 235 (260)
T ss_dssp HHHHHHHHHHHHHCCSEEEEECCCCTTCHHHHHHHHHHHHHHTTTSEEEEECSSGGGST-TCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHhcCCCEEEEEcCCHHHHH-hCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999976789999999999875 59999999999998754
|
| >1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=100.00 E-value=2e-56 Score=374.69 Aligned_cols=202 Identities=21% Similarity=0.214 Sum_probs=173.3
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
..+|+++|++++|++ ++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++. .
T Consensus 8 ~~~l~~~~ls~~y~~---~il~~vsl~i~~Ge~~~iiG~NGsGKSTLlk~l~Gl~~p~~G~I~~~g~~~~--~------- 75 (214)
T 1sgw_A 8 GSKLEIRDLSVGYDK---PVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPIT--K------- 75 (214)
T ss_dssp -CEEEEEEEEEESSS---EEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGG--G-------
T ss_pred CceEEEEEEEEEeCC---eEEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCeEEEECCEEhh--h-------
Confidence 457999999999963 6999999999999999999999999999999999999999999999998763 1
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
+++.++|+||++. +++.+||.||+.++........ . .+++.++++.+|+++ . ++++.+|||||||||+||||
T Consensus 76 ~~~~i~~v~q~~~-~~~~~tv~enl~~~~~~~~~~~----~-~~~~~~~l~~~gl~~-~-~~~~~~LSgGqkqrv~lara 147 (214)
T 1sgw_A 76 VKGKIFFLPEEII-VPRKISVEDYLKAVASLYGVKV----N-KNEIMDALESVEVLD-L-KKKLGELSQGTIRRVQLAST 147 (214)
T ss_dssp GGGGEEEECSSCC-CCTTSBHHHHHHHHHHHTTCCC----C-HHHHHHHHHHTTCCC-T-TSBGGGSCHHHHHHHHHHHH
T ss_pred hcCcEEEEeCCCc-CCCCCCHHHHHHHHHHhcCCch----H-HHHHHHHHHHcCCCc-C-CCChhhCCHHHHHHHHHHHH
Confidence 2567999999985 5677899999988521100000 1 235678899999986 4 88999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeE
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGF 237 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i 237 (245)
|+.+|++|||||||+|||+.+++.++++|+++++ +.|||++|||++++..+||+++++. |+|
T Consensus 148 L~~~p~lllLDEPts~LD~~~~~~l~~~l~~~~~~g~tiiivtHd~~~~~~~~d~v~~~~-~~~ 210 (214)
T 1sgw_A 148 LLVNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREELSYCDVNENLHKYS-TKI 210 (214)
T ss_dssp TTSCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCCTTSSEEEEGGGGB-C--
T ss_pred HHhCCCEEEEECCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEeC-Ccc
Confidence 9999999999999999999999999999999864 6899999999999999999988765 555
|
| >2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.7e-55 Score=376.98 Aligned_cols=203 Identities=22% Similarity=0.259 Sum_probs=176.8
Q ss_pred eEEEEeEEEECCCC--ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGT--QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 17 ~l~~~~l~~~y~~~--~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
||+++|++++|++. .+++|+++||+|+ ||+++|+||||||||||+|+|+|++ |++|+|.++|+++... ..
T Consensus 1 ml~~~~l~~~y~~~~~~~~il~~vsl~i~-Ge~~~i~G~NGsGKSTLlk~l~Gl~-p~~G~I~~~g~~~~~~------~~ 72 (263)
T 2pjz_A 1 MIQLKNVGITLSGKGYERFSLENINLEVN-GEKVIILGPNGSGKTTLLRAISGLL-PYSGNIFINGMEVRKI------RN 72 (263)
T ss_dssp CEEEEEEEEEEEEETTEEEEEEEEEEEEC-SSEEEEECCTTSSHHHHHHHHTTSS-CCEEEEEETTEEGGGC------SC
T ss_pred CEEEEEEEEEeCCCCccceeEEeeeEEEC-CEEEEEECCCCCCHHHHHHHHhCCC-CCCcEEEECCEECcch------HH
Confidence 58999999999631 1469999999999 9999999999999999999999999 9999999999887431 12
Q ss_pred CCCcEE-EEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCC-CccCCCCCCCCChHHHHHHHHH
Q 035832 95 PPEKVG-IVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLD-GTSLDKDPHSLSGGYKRRLALA 172 (245)
Q Consensus 95 ~~~~i~-~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~-~~~~~~~~~~LSgGqkqrv~iA 172 (245)
++++| |+||++. + .+|+.||+.++.... . ...+++.++++.+++. +. +++++.+|||||||||+||
T Consensus 73 -~~~i~~~v~Q~~~--l-~~tv~enl~~~~~~~-~------~~~~~~~~~l~~~gl~~~~-~~~~~~~LSgGqkqRv~lA 140 (263)
T 2pjz_A 73 -YIRYSTNLPEAYE--I-GVTVNDIVYLYEELK-G------LDRDLFLEMLKALKLGEEI-LRRKLYKLSAGQSVLVRTS 140 (263)
T ss_dssp -CTTEEECCGGGSC--T-TSBHHHHHHHHHHHT-C------CCHHHHHHHHHHTTCCGGG-GGSBGGGSCHHHHHHHHHH
T ss_pred -hhheEEEeCCCCc--c-CCcHHHHHHHhhhhc-c------hHHHHHHHHHHHcCCChhH-hcCChhhCCHHHHHHHHHH
Confidence 46799 9999984 3 789999998852100 0 1123577889999998 75 6999999999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhcc-EEEEEeCCeEEEec
Q 035832 173 IQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVD-HSWRMDMGGFLVEQ 241 (245)
Q Consensus 173 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d-~v~~l~~G~i~~~~ 241 (245)
|||+.+|++|||||||++||+.+++.++++|+++++ |||++|||++++..+|| ++++|++|+++..+
T Consensus 141 raL~~~p~lllLDEPts~LD~~~~~~l~~~L~~~~~--tviivtHd~~~~~~~~d~~i~~l~~G~i~~~g 208 (263)
T 2pjz_A 141 LALASQPEIVGLDEPFENVDAARRHVISRYIKEYGK--EGILVTHELDMLNLYKEYKAYFLVGNRLQGPI 208 (263)
T ss_dssp HHHHTCCSEEEEECTTTTCCHHHHHHHHHHHHHSCS--EEEEEESCGGGGGGCTTSEEEEEETTEEEEEE
T ss_pred HHHHhCCCEEEEECCccccCHHHHHHHHHHHHHhcC--cEEEEEcCHHHHHHhcCceEEEEECCEEEEec
Confidence 999999999999999999999999999999999865 99999999999999999 99999999998754
|
| >2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-54 Score=368.44 Aligned_cols=201 Identities=23% Similarity=0.364 Sum_probs=163.9
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
+|+++|++++|++..+++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|
T Consensus 3 ~l~~~~l~~~y~~~~~~vl~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~I~~~g---------------- 66 (237)
T 2cbz_A 3 SITVRNATFTWARSDPPTLNGITFSIPEGALVAVVGQVGCGKSSLLSALLAEMDKVEGHVAIKG---------------- 66 (237)
T ss_dssp CEEEEEEEEESCTTSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTCSEEEEEEEEECS----------------
T ss_pred eEEEEEEEEEeCCCCCceeeeeEEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCceEEECC----------------
Confidence 6999999999964235799999999999999999999999999999999999999999999976
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC----ccCCCCCCCCChHHHHHHHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG----TSLDKDPHSLSGGYKRRLALA 172 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~----~~~~~~~~~LSgGqkqrv~iA 172 (245)
++||+||++. ++..||+||+.++... . . ..... .....++.+.+++.+ ..+++++.+|||||||||+||
T Consensus 67 -~i~~v~Q~~~--~~~~tv~enl~~~~~~-~-~-~~~~~-~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqRv~lA 139 (237)
T 2cbz_A 67 -SVAYVPQQAW--IQNDSLRENILFGCQL-E-E-PYYRS-VIQACALLPDLEILPSGDRTEIGEKGVNLSGGQKQRVSLA 139 (237)
T ss_dssp -CEEEECSSCC--CCSEEHHHHHHTTSCC-C-T-THHHH-HHHHTTCHHHHTTSTTGGGSEESTTSBCCCHHHHHHHHHH
T ss_pred -EEEEEcCCCc--CCCcCHHHHhhCcccc-C-H-HHHHH-HHHHHhhHHHHHhccccccccccCCCCCCCHHHHHHHHHH
Confidence 3899999984 4578999999986321 1 1 11111 111112233334321 124788999999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH---HhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 173 IQLVQVPDLLILDEPLAGLDWKARADVVKLLK---HLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 173 ral~~~p~llllDEPts~LD~~~~~~i~~~l~---~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|||+.+|++|||||||+|||+.++..+++.|. ++.+++|||++|||++.+. .||++++|++|+++..+
T Consensus 140 raL~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~~~tviivtH~~~~~~-~~d~v~~l~~G~i~~~g 210 (237)
T 2cbz_A 140 RAVYSNADIYLFDDPLSAVDAHVGKHIFENVIGPKGMLKNKTRILVTHSMSYLP-QVDVIIVMSGGKISEMG 210 (237)
T ss_dssp HHHHHCCSEEEEESTTTTSCHHHHHHHHHHTTSTTSTTTTSEEEEECSCSTTGG-GSSEEEEEETTEEEEEE
T ss_pred HHHhcCCCEEEEeCcccccCHHHHHHHHHHHHHHHhhcCCCEEEEEecChHHHH-hCCEEEEEeCCEEEEeC
Confidence 99999999999999999999999999999995 4445689999999999874 79999999999998754
|
| >2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A | Back alignment and structure |
|---|
Probab=100.00 E-value=4.2e-54 Score=364.15 Aligned_cols=204 Identities=21% Similarity=0.347 Sum_probs=161.6
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
.+|+++|++++|+++.+++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|
T Consensus 5 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g--------------- 69 (229)
T 2pze_A 5 TEVVMENVTAFWEEGGTPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG--------------- 69 (229)
T ss_dssp EEEEEEEEEECSSTTSCCSEEEEEEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEECS---------------
T ss_pred ceEEEEEEEEEeCCCCceeeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCcCCccEEEECC---------------
Confidence 36999999999963335799999999999999999999999999999999999999999999975
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHH-HHHHHHHHHHcCCC-CccCCCCCCCCChHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYL-ALNLQRAINWVGLD-GTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~l~-~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
+++|+||++. +++ .||+||+.++... ......... ...+.+.++.+... ....++++.+|||||||||+|||
T Consensus 70 --~i~~v~q~~~-~~~-~tv~enl~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~LSgGqkqrv~lAr 143 (229)
T 2pze_A 70 --RISFCSQFSW-IMP-GTIKENIIFGVSY--DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLAR 143 (229)
T ss_dssp --CEEEECSSCC-CCS-BCHHHHHHTTSCC--CHHHHHHHHHHTTCHHHHTTSTTGGGSCBCTTCTTSCHHHHHHHHHHH
T ss_pred --EEEEEecCCc-ccC-CCHHHHhhccCCc--ChHHHHHHHHHhCcHHHHHhCcccccccccCCCCcCCHHHHHHHHHHH
Confidence 3899999985 454 5999999986321 100000000 00111222222110 00134567899999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHH-HHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKL-LKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~-l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||+.+|++|||||||+|||+.+++.+++. +.++.+++|||++|||++++. .||++++|++|+++..+
T Consensus 144 al~~~p~lllLDEPts~LD~~~~~~i~~~l~~~~~~~~tvi~vtH~~~~~~-~~d~v~~l~~G~i~~~g 211 (229)
T 2pze_A 144 AVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSYFYG 211 (229)
T ss_dssp HHHSCCSEEEEESTTTTSCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HCSEEEEEETTEEEEEE
T ss_pred HHhcCCCEEEEECcccCCCHHHHHHHHHHHHHHhhCCCEEEEEcCChHHHH-hCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999997 456655789999999999875 59999999999998754
|
| >3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-55 Score=396.40 Aligned_cols=208 Identities=24% Similarity=0.267 Sum_probs=178.2
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
...|+++||+|+|+++..++|+|+||+|++||+++|+||||||||||||+|+|+++ ++|+|+++|+++...+. ..
T Consensus 17 ~~~i~~~~l~~~y~~~~~~~L~~vsl~i~~Ge~~~llGpsGsGKSTLLr~iaGl~~-~~G~I~i~G~~i~~~~~----~~ 91 (390)
T 3gd7_A 17 GGQMTVKDLTAKYTEGGNAILENISFSISPGQRVGLLGRTGSGKSTLLSAFLRLLN-TEGEIQIDGVSWDSITL----EQ 91 (390)
T ss_dssp SCCEEEEEEEEESSSSSCCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTCSE-EEEEEEESSCBTTSSCH----HH
T ss_pred CCeEEEEEEEEEecCCCeEEeeceeEEEcCCCEEEEECCCCChHHHHHHHHhCCCC-CCeEEEECCEECCcCCh----HH
Confidence 34699999999996434579999999999999999999999999999999999998 89999999998854321 11
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCC-----------CCh
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHS-----------LSG 163 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~-----------LSg 163 (245)
+++.+|||||++. +| ++||+||+.+... . ..+++.++++.++|.+. .++++.+ |||
T Consensus 92 ~rr~ig~v~Q~~~-lf-~~tv~enl~~~~~---~-------~~~~v~~~l~~~~L~~~-~~~~p~~l~~~i~~~g~~LSG 158 (390)
T 3gd7_A 92 WRKAFGVIPQKVF-IF-SGTFRKNLDPNAA---H-------SDQEIWKVADEVGLRSV-IEQFPGKLDFVLVDGGCVLSH 158 (390)
T ss_dssp HHHTEEEESCCCC-CC-SEEHHHHHCTTCC---S-------CHHHHHHHHHHTTCHHH-HTTSTTGGGCEECTTTTTSCH
T ss_pred HhCCEEEEcCCcc-cC-ccCHHHHhhhccc---c-------CHHHHHHHHHHhCCHHH-HhhcccccccccccccccCCH
Confidence 2467999999984 44 4799999975311 1 12246678999999875 6899988 999
Q ss_pred HHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 164 GYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 164 Gqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||||||+|||||+.+|++|||||||++||+..+.++++.|+++..+.|+|++|||++.+ ..||||++|++|+++..+
T Consensus 159 GqrQRvalARAL~~~P~lLLLDEPts~LD~~~~~~l~~~l~~~~~~~tvi~vtHd~e~~-~~aDri~vl~~G~i~~~g 235 (390)
T 3gd7_A 159 GHKQLMCLARSVLSKAKILLLDEPSAHLDPVTYQIIRRTLKQAFADCTVILCEARIEAM-LECDQFLVIEENKVRQYD 235 (390)
T ss_dssp HHHHHHHHHHHHHTTCCEEEEESHHHHSCHHHHHHHHHHHHTTTTTSCEEEECSSSGGG-TTCSEEEEEETTEEEEES
T ss_pred HHHHHHHHHHHHhcCCCEEEEeCCccCCCHHHHHHHHHHHHHHhCCCEEEEEEcCHHHH-HhCCEEEEEECCEEEEEC
Confidence 99999999999999999999999999999999999999999887679999999998754 579999999999998764
|
| >3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.3e-53 Score=400.94 Aligned_cols=217 Identities=23% Similarity=0.343 Sum_probs=178.3
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.|+++|++|+|+++..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..++
T Consensus 341 ~i~~~~v~~~y~~~~~~~l~~isl~i~~Ge~~~ivG~sGsGKSTll~~l~g~~~~~~G~i~i~g~~i~~~~~----~~~r 416 (587)
T 3qf4_A 341 SVSFENVEFRYFENTDPVLSGVNFSVKPGSLVAVLGETGSGKSTLMNLIPRLIDPERGRVEVDELDVRTVKL----KDLR 416 (587)
T ss_dssp CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEECSSSSSHHHHHHTTTTSSCCSEEEEEESSSBGGGBCH----HHHH
T ss_pred cEEEEEEEEEcCCCCCcceeceEEEEcCCCEEEEECCCCCCHHHHHHHHhCCccCCCcEEEECCEEcccCCH----HHHH
Confidence 599999999997545679999999999999999999999999999999999999999999999998854321 1235
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHH-HHHHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKE-YLALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
+++|||||+|. +| +.|++||+.++.+... ...... .....+.+.++.+ |++.. .++++.+||||||||++|||
T Consensus 417 ~~i~~v~Q~~~-lf-~~tv~eni~~~~~~~~-~~~~~~~~~~~~~~~~i~~l~~g~~~~-~~~~~~~LSgGqrQrv~lAR 492 (587)
T 3qf4_A 417 GHISAVPQETV-LF-SGTIKENLKWGREDAT-DDEIVEAAKIAQIHDFIISLPEGYDSR-VERGGRNFSGGQKQRLSIAR 492 (587)
T ss_dssp HHEEEECSSCC-CC-SEEHHHHHTTTCSSCC-HHHHHHHHHHTTCHHHHHTSSSGGGCE-ECSSSCSSCHHHHHHHHHHH
T ss_pred hheEEECCCCc-Cc-CccHHHHHhccCCCCC-HHHHHHHHHHhCcHHHHHhcccchhhH-hcCCCCCcCHHHHHHHHHHH
Confidence 78999999984 44 5699999998743211 100000 0011123334443 55553 58889999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|+|||+++.+. .||||++|++|+++..+.
T Consensus 493 al~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~l~~~~-~~d~i~vl~~G~i~~~g~ 560 (587)
T 3qf4_A 493 ALVKKPKVLILDDCTSSVDPITEKRILDGLKRYTKGCTTFIITQKIPTAL-LADKILVLHEGKVAGFGT 560 (587)
T ss_dssp HHHTCCSEEEEESCCTTSCHHHHHHHHHHHHHHSTTCEEEEEESCHHHHT-TSSEEEEEETTEEEEEEC
T ss_pred HHHcCCCEEEEECCcccCCHHHHHHHHHHHHHhCCCCEEEEEecChHHHH-hCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999877899999999999875 899999999999987653
|
| >4a82_A Cystic fibrosis transmembrane conductance regulat; CFTR, ION channel, transport protein, casse protein; 2.00A {Homo sapiens} PDB: 2onj_A* 2hyd_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-52 Score=398.12 Aligned_cols=209 Identities=28% Similarity=0.423 Sum_probs=174.7
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.|+++|++++|+++..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..++
T Consensus 339 ~i~~~~v~~~y~~~~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~----~~~r 414 (578)
T 4a82_A 339 RIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLT----GSLR 414 (578)
T ss_dssp CEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCH----HHHH
T ss_pred eEEEEEEEEEcCCCCCcceeeeEEEECCCCEEEEECCCCChHHHHHHHHhcCCCCCCcEEEECCEEhhhCCH----HHHh
Confidence 599999999997645679999999999999999999999999999999999999999999999998854321 1235
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHc-----------CCCCccCCCCCCCCChHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWV-----------GLDGTSLDKDPHSLSGGY 165 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-----------~l~~~~~~~~~~~LSgGq 165 (245)
+++|||||+|. +| +.|++||+.++.+... .. ++.++++.. |++.. .++.+.+|||||
T Consensus 415 ~~i~~v~Q~~~-l~-~~tv~eni~~~~~~~~-----~~----~~~~~~~~~~~~~~~~~lp~g~~t~-~~~~g~~LSgGq 482 (578)
T 4a82_A 415 NQIGLVQQDNI-LF-SDTVKENILLGRPTAT-----DE----EVVEAAKMANAHDFIMNLPQGYDTE-VGERGVKLSGGQ 482 (578)
T ss_dssp HTEEEECSSCC-CC-SSBHHHHHGGGCSSCC-----HH----HHHHHHHHTTCHHHHHTSTTGGGCB-CCGGGTTSCHHH
T ss_pred hheEEEeCCCc-cC-cccHHHHHhcCCCCCC-----HH----HHHHHHHHhCcHHHHHhCcchhhhh-hccCCCcCCHHH
Confidence 67999999984 44 5699999999743211 11 122333333 33332 456678999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 166 KRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 166 kqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
|||++|||||+.+|+++||||||++||+.+.+.+.+.++++.+++|+|++|||++.+. .||++++|++|+++.++.
T Consensus 483 ~Qrv~lAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~-~~d~i~~l~~G~i~~~g~ 558 (578)
T 4a82_A 483 KQRLSIARIFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTIT-HADKIVVIENGHIVETGT 558 (578)
T ss_dssp HHHHHHHHHHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGTT-TCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-cCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999999877899999999999875 599999999999987654
|
| >3b5x_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; 5.50A {Vibrio cholerae} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.5e-52 Score=395.07 Aligned_cols=211 Identities=27% Similarity=0.383 Sum_probs=175.6
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
.+|+++|++++|+++.+++|+|+||++++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+. ..+
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~i~l~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~~~~~~~----~~~ 415 (582)
T 3b5x_A 340 GEVDVKDVTFTYQGKEKPALSHVSFSIPQGKTVALVGRSGSGKSTIANLFTRFYDVDSGSICLDGHDVRDYKL----TNL 415 (582)
T ss_pred CeEEEEEEEEEcCCCCccccccceEEECCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECCEEhhhCCH----HHH
Confidence 4699999999997433579999999999999999999999999999999999999999999999998754321 123
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCc----------cCCCCCCCCChHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGT----------SLDKDPHSLSGGY 165 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGq 165 (245)
++++|||||+|. +| +.|++||+.++.... .. .+++.++++.+++.+. ..++.+.+|||||
T Consensus 416 ~~~i~~v~Q~~~-l~-~~tv~eni~~~~~~~-~~-------~~~~~~~~~~~~l~~~~~~~p~g~~t~~~~~~~~LSgGq 485 (582)
T 3b5x_A 416 RRHFALVSQNVH-LF-NDTIANNIAYAAEGE-YT-------REQIEQAARQAHAMEFIENMPQGLDTVIGENGTSLSGGQ 485 (582)
T ss_pred hcCeEEEcCCCc-cc-cccHHHHHhccCCCC-CC-------HHHHHHHHHHCCCHHHHHhCcccccchhcCCCCcCCHHH
Confidence 578999999984 44 469999999873111 11 1224444555544321 2455678999999
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 166 KRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 166 kqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+. .||++++|++|+++..+
T Consensus 486 ~qr~~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g 560 (582)
T 3b5x_A 486 RQRVAIARALLRDAPVLILDEATSALDTESERAIQAALDELQKNKTVLVIAHRLSTIE-QADEILVVDEGEIIERG 560 (582)
T ss_pred HHHHHHHHHHHcCCCEEEEECccccCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHH-hCCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999999999999877899999999999876 79999999999998764
|
| >3b60_A Lipid A export ATP-binding/permease protein MSBA; ABC transporter, lipid flippase, hydrolase, inner membrane, lipid transport, membrane; HET: ANP; 3.70A {Salmonella typhimurium} SCOP: c.37.1.12 f.37.1.1 PDB: 3b5y_A* 3b5z_A* 3b5w_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.2e-52 Score=395.34 Aligned_cols=210 Identities=27% Similarity=0.391 Sum_probs=175.2
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
.+|+++|++++|+++.+++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..+
T Consensus 340 ~~i~~~~v~~~y~~~~~~~l~~v~~~i~~G~~~~ivG~sGsGKSTLl~~l~g~~~p~~G~i~~~g~~~~~~~~----~~~ 415 (582)
T 3b60_A 340 GDLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTL----ASL 415 (582)
T ss_dssp CCEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCH----HHH
T ss_pred CcEEEEEEEEEcCCCCCccccceeEEEcCCCEEEEECCCCCCHHHHHHHHhhccCCCCCeEEECCEEccccCH----HHH
Confidence 3699999999997432579999999999999999999999999999999999999999999999998854321 123
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcC-----------CCCccCCCCCCCCChH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVG-----------LDGTSLDKDPHSLSGG 164 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~~LSgG 164 (245)
++++|||||+|. +| +.|++||+.++.... .. . +++.++++.++ ++.. .++.+.+||||
T Consensus 416 ~~~i~~v~Q~~~-l~-~~tv~eni~~~~~~~-~~---~----~~~~~~l~~~~l~~~~~~~p~g~~~~-~~~~~~~LSgG 484 (582)
T 3b60_A 416 RNQVALVSQNVH-LF-NDTVANNIAYARTEE-YS---R----EQIEEAARMAYAMDFINKMDNGLDTI-IGENGVLLSGG 484 (582)
T ss_dssp HHTEEEECSSCC-CC-SSBHHHHHHTTTTSC-CC---H----HHHHHHHHTTTCHHHHHHSTTGGGSB-CCTTSCSSCHH
T ss_pred HhhCeEEccCCc-CC-CCCHHHHHhccCCCC-CC---H----HHHHHHHHHcCCHHHHHhcccccccc-ccCCCCCCCHH
Confidence 567999999985 44 469999999873111 11 1 12334444444 4433 46678999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 165 YKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 165 qkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
||||++|||||+.+|++|||||||++||+.+++.+.+.|+++.+++|+|++||+++.+. .||++++|++|+++..+
T Consensus 485 q~qrl~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~tvi~itH~~~~~~-~~d~i~~l~~G~i~~~g 560 (582)
T 3b60_A 485 QRQRIAIARALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTIE-QADEIVVVEDGIIVERG 560 (582)
T ss_dssp HHHHHHHHHHHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGTT-TCSEEEEEETTEEEEEE
T ss_pred HHHHHHHHHHHHhCCCEEEEECccccCCHHHHHHHHHHHHHHhCCCEEEEEeccHHHHH-hCCEEEEEECCEEEEec
Confidence 99999999999999999999999999999999999999999877899999999999875 79999999999998764
|
| >3qf4_B Uncharacterized ABC transporter ATP-binding prote TM_0288; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.9e-52 Score=395.82 Aligned_cols=209 Identities=22% Similarity=0.334 Sum_probs=173.5
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.|+++|++|+|++ ..++|+|+||++++||+++|+||||||||||+++|+|+++|++|+|.++|+++...+. ..++
T Consensus 354 ~i~~~~v~~~y~~-~~~~l~~isl~i~~G~~~~ivG~sGsGKSTll~~l~g~~~p~~G~i~~~g~~i~~~~~----~~~r 428 (598)
T 3qf4_B 354 EIEFKNVWFSYDK-KKPVLKDITFHIKPGQKVALVGPTGSGKTTIVNLLMRFYDVDRGQILVDGIDIRKIKR----SSLR 428 (598)
T ss_dssp CEEEEEEECCSSS-SSCSCCSEEEECCTTCEEEEECCTTSSTTHHHHHHTTSSCCSEEEEEETTEEGGGSCH----HHHH
T ss_pred eEEEEEEEEECCC-CCccccceEEEEcCCCEEEEECCCCCcHHHHHHHHhcCcCCCCeEEEECCEEhhhCCH----HHHH
Confidence 5999999999975 3579999999999999999999999999999999999999999999999999854321 1235
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCc----------cCCCCCCCCChHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGT----------SLDKDPHSLSGGYK 166 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqk 166 (245)
+++|||||+|. +| +.|++||+.++.+.... +++.++++.+++.+. ..++.+.+||||||
T Consensus 429 ~~i~~v~Q~~~-lf-~~tv~eni~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~g~~t~~~~~g~~LSgGq~ 497 (598)
T 3qf4_B 429 SSIGIVLQDTI-LF-STTVKENLKYGNPGATD---------EEIKEAAKLTHSDHFIKHLPEGYETVLTDNGEDLSQGQR 497 (598)
T ss_dssp HHEEEECTTCC-CC-SSBHHHHHHSSSTTCCT---------THHHHHTTTTTCHHHHHTSTTGGGCBCHHHHTTSCHHHH
T ss_pred hceEEEeCCCc-cc-cccHHHHHhcCCCCCCH---------HHHHHHHHHhCCHHHHHhccccccchhcCCCCCCCHHHH
Confidence 68999999984 44 57999999987332111 112333444444322 12334579999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 167 RRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 167 qrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
||++|||||+.+|++||||||||+||+.+.+.+.+.|+++.+++|+|+|||+++.+.. ||+|++|++|+++..+.
T Consensus 498 Qrv~iAral~~~p~illlDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~~~~-~d~i~~l~~G~i~~~g~ 572 (598)
T 3qf4_B 498 QLLAITRAFLANPKILILDEATSNVDTKTEKSIQAAMWKLMEGKTSIIIAHRLNTIKN-ADLIIVLRDGEIVEMGK 572 (598)
T ss_dssp HHHHHHHHHHTCCSEEEECCCCTTCCHHHHHHHHHHHHHHHTTSEEEEESCCTTHHHH-CSEEEEECSSSEEECSC
T ss_pred HHHHHHHHHhcCCCEEEEECCccCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999999999999878999999999998864 99999999999987653
|
| >2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-50 Score=353.34 Aligned_cols=200 Identities=21% Similarity=0.335 Sum_probs=144.9
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
.++|+++|+++.+ +++|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|
T Consensus 38 ~~~l~~~~l~~~~----~~vl~~isl~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~~g-------------- 99 (290)
T 2bbs_A 38 DDSLSFSNFSLLG----TPVLKDINFKIERGQLLAVAGSTGAGKTSLLMMIMGELEPSEGKIKHSG-------------- 99 (290)
T ss_dssp ------------C----CCSEEEEEEEECTTCEEEEEESTTSSHHHHHHHHTTSSCEEEEEEECCS--------------
T ss_pred CceEEEEEEEEcC----ceEEEeeEEEEcCCCEEEEECCCCCcHHHHHHHHhcCCCCCCcEEEECC--------------
Confidence 4579999999864 3689999999999999999999999999999999999999999999865
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHH-HHHHHHHHHHcCCC-CccCCCCCCCCChHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYL-ALNLQRAINWVGLD-GTSLDKDPHSLSGGYKRRLALA 172 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~l~-~~~~~~~~~~LSgGqkqrv~iA 172 (245)
+++|+||++. +++ .||+||+. +... ......... ...+.+.++.+... ....++++.+|||||||||+||
T Consensus 100 ---~i~~v~Q~~~-l~~-~tv~enl~-~~~~--~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~LSgGq~QRv~lA 171 (290)
T 2bbs_A 100 ---RISFCSQNSW-IMP-GTIKENII-GVSY--DEYRYRSVIKACQLEEDISKFAEKDNIVLGEGGITLSGGQRARISLA 171 (290)
T ss_dssp ---CEEEECSSCC-CCS-SBHHHHHH-TTCC--CHHHHHHHHHHTTCHHHHHTSTTGGGCBC----CCCCHHHHHHHHHH
T ss_pred ---EEEEEeCCCc-cCc-ccHHHHhh-Cccc--chHHHHHHHHHhChHHHHHhccccccchhcCccCcCCHHHHHHHHHH
Confidence 3899999984 454 59999998 5311 100000000 00112222222211 0113456789999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 173 IQLVQVPDLLILDEPLAGLDWKARADVVKLL-KHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 173 ral~~~p~llllDEPts~LD~~~~~~i~~~l-~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|||+.+|++|||||||+|||+.++..+++.+ .++.+++|||++|||++.+. .||++++|++|+++..+
T Consensus 172 raL~~~p~lllLDEPts~LD~~~~~~i~~~ll~~~~~~~tviivtHd~~~~~-~~d~i~~l~~G~i~~~g 240 (290)
T 2bbs_A 172 RAVYKDADLYLLDSPFGYLDVLTEKEIFESCVCKLMANKTRILVTSKMEHLK-KADKILILHEGSSYFYG 240 (290)
T ss_dssp HHHHSCCSEEEEESTTTTCCHHHHHHHHHHCCCCCTTTSEEEEECCCHHHHH-HSSEEEEEETTEEEEEE
T ss_pred HHHHCCCCEEEEECCcccCCHHHHHHHHHHHHHHhhCCCEEEEEecCHHHHH-cCCEEEEEECCeEEEeC
Confidence 9999999999999999999999999999974 55555789999999999875 69999999999998654
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.3e-48 Score=396.67 Aligned_cols=211 Identities=25% Similarity=0.383 Sum_probs=177.1
Q ss_pred eEEEEeEEEECCCC-ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGT-QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 17 ~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
.|+++||+|+|+++ +.++|+|+||+|++||.+||+||||||||||+++|.|+++|++|+|.+||.|+...+. ..+
T Consensus 1076 ~I~f~nVsf~Y~~~~~~~VL~~isl~I~~Ge~vaIVG~SGsGKSTL~~lL~rl~~p~~G~I~iDG~di~~i~~----~~l 1151 (1321)
T 4f4c_A 1076 KVIFKNVRFAYPERPEIEILKGLSFSVEPGQTLALVGPSGCGKSTVVALLERFYDTLGGEIFIDGSEIKTLNP----EHT 1151 (1321)
T ss_dssp CEEEEEEEECCTTSCSSCSEEEEEEEECTTCEEEEECSTTSSTTSHHHHHTTSSCCSSSEEEETTEETTTBCH----HHH
T ss_pred eEEEEEEEEeCCCCCCCccccceeEEECCCCEEEEECCCCChHHHHHHHHhcCccCCCCEEEECCEEhhhCCH----HHH
Confidence 49999999999753 3479999999999999999999999999999999999999999999999999865432 235
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcC-----------CCCccCCCCCCCCChH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVG-----------LDGTSLDKDPHSLSGG 164 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------l~~~~~~~~~~~LSgG 164 (245)
|++|+||||+|. ++..|++||+.+|....... ++++.++++..+ ++.. ......+||||
T Consensus 1152 R~~i~~V~Qdp~--LF~gTIreNI~~gld~~~~s-------d~ei~~Al~~a~l~~~I~~Lp~GldT~-vge~G~~LSgG 1221 (1321)
T 4f4c_A 1152 RSQIAIVSQEPT--LFDCSIAENIIYGLDPSSVT-------MAQVEEAARLANIHNFIAELPEGFETR-VGDRGTQLSGG 1221 (1321)
T ss_dssp HTTEEEECSSCC--CCSEEHHHHHSSSSCTTTSC-------HHHHHHHHHHTTCHHHHHTSTTTTCSE-ETTTSCSSCHH
T ss_pred HhheEEECCCCE--eeCccHHHHHhccCCCCCCC-------HHHHHHHHHHhCChHHHHcCcCCCCCE-ecCCCcccCHH
Confidence 788999999994 45789999999984321111 122334444443 3332 35566789999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 165 YKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 165 qkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
||||++|||||+++|+|||||||||+||+++.+.+.+.|+++.+++|+|+|+|+++.+. .||+|++|++|+|++.+.
T Consensus 1222 QrQriaiARAllr~~~ILiLDEaTSaLD~~tE~~Iq~~l~~~~~~~TvI~IAHRLsTi~-~aD~I~Vld~G~IvE~Gt 1298 (1321)
T 4f4c_A 1222 QKQRIAIARALVRNPKILLLDEATSALDTESEKVVQEALDRAREGRTCIVIAHRLNTVM-NADCIAVVSNGTIIEKGT 1298 (1321)
T ss_dssp HHHHHHHHHHHHSCCSEEEEESCCCSTTSHHHHHHHHHHTTTSSSSEEEEECSSSSTTT-TCSEEEEESSSSEEEEEC
T ss_pred HHHHHHHHHHHHhCCCEEEEeCccccCCHHHHHHHHHHHHHHcCCCEEEEeccCHHHHH-hCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999999999999999888899999999999875 689999999999987654
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-48 Score=394.23 Aligned_cols=216 Identities=27% Similarity=0.396 Sum_probs=176.1
Q ss_pred eEEEEeEEEECCCC-ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGT-QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 17 ~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
.|+++|++|+|+++ ..++|+|+||+|++||+++|+||||||||||+++|+|+++|++|+|.++|.++...+. ..+
T Consensus 387 ~i~~~~v~~~y~~~~~~~vL~~isl~i~~G~~~~ivG~sGsGKSTl~~ll~g~~~~~~G~i~i~g~~i~~~~~----~~~ 462 (1284)
T 3g5u_A 387 NLEFKNIHFSYPSRKEVQILKGLNLKVKSGQTVALVGNSGCGKSTTVQLMQRLYDPLDGMVSIDGQDIRTINV----RYL 462 (1284)
T ss_dssp CEEEEEEEECCSSTTSCCSEEEEEEEECTTCEEEEECCSSSSHHHHHHHTTTSSCCSEEEEEETTEEGGGSCH----HHH
T ss_pred eEEEEEEEEEcCCCCCCcceecceEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEEHHhCCH----HHH
Confidence 59999999999753 3469999999999999999999999999999999999999999999999999854322 223
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHH-HHHHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKE-YLALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALA 172 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~-~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~iA 172 (245)
+++||||||+|. +| ..|++||+.++..... ...... .....+.+.++.+ |++.. ..+.+.+||||||||++||
T Consensus 463 r~~i~~v~Q~~~-l~-~~ti~eNi~~g~~~~~-~~~~~~~~~~~~~~~~i~~l~~g~~t~-~~~~g~~LSgGq~QriaiA 538 (1284)
T 3g5u_A 463 REIIGVVSQEPV-LF-ATTIAENIRYGREDVT-MDEIEKAVKEANAYDFIMKLPHQFDTL-VGERGAQLSGGQKQRIAIA 538 (1284)
T ss_dssp HHHEEEECSSCC-CC-SSCHHHHHHHHCSSCC-HHHHHHHHHHTTCHHHHHHSTTGGGCC-CSSSSCSSCHHHHHHHHHH
T ss_pred HhheEEEcCCCc-cC-CccHHHHHhcCCCCCC-HHHHHHHHHHhCcHHHHHhcccccccc-ccCCCCccCHHHHHHHHHH
Confidence 568999999984 44 5699999999843211 100000 0111123344444 34432 5677889999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 173 IQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 173 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
|||+.+|++||||||||+||+++.+.+.+.++.+.+++|+|+|||+++.+.. ||+|++|++|+++..+
T Consensus 539 Ral~~~p~iliLDEpts~LD~~~~~~i~~~l~~~~~~~t~i~itH~l~~i~~-~d~i~vl~~G~i~~~g 606 (1284)
T 3g5u_A 539 RALVRNPKILLLDEATSALDTESEAVVQAALDKAREGRTTIVIAHRLSTVRN-ADVIAGFDGGVIVEQG 606 (1284)
T ss_dssp HHHHHCCSEEEEESTTCSSCHHHHHHHHHHHHHHHTTSEEEEECSCHHHHTT-CSEEEECSSSCCCCEE
T ss_pred HHHhcCCCEEEEECCCCCCCHHHHHHHHHHHHHHcCCCEEEEEecCHHHHHc-CCEEEEEECCEEEEEC
Confidence 9999999999999999999999999999999988788999999999999865 9999999999997654
|
| >4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.6e-47 Score=390.60 Aligned_cols=213 Identities=24% Similarity=0.356 Sum_probs=178.0
Q ss_pred eEEEEeEEEECCCC-ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGT-QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 17 ~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
.|+++|++|+|++. +.++|+|+||+|++|+.++|+||||||||||+++|.|+++|++|+|.++|.++...+. ..+
T Consensus 415 ~I~~~nvsF~Y~~~~~~~vL~~isl~i~~G~~vaivG~sGsGKSTll~ll~~~~~~~~G~I~idG~~i~~~~~----~~l 490 (1321)
T 4f4c_A 415 DITVENVHFTYPSRPDVPILRGMNLRVNAGQTVALVGSSGCGKSTIISLLLRYYDVLKGKITIDGVDVRDINL----EFL 490 (1321)
T ss_dssp CEEEEEEEECCSSSTTSCSEEEEEEEECTTCEEEEEECSSSCHHHHHHHHTTSSCCSEEEEEETTEETTTSCH----HHH
T ss_pred cEEEEEeeeeCCCCCCCceeeceEEeecCCcEEEEEecCCCcHHHHHHHhccccccccCcccCCCccchhccH----HHH
Confidence 49999999999753 4679999999999999999999999999999999999999999999999999865432 234
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHH-----HHHHHHHc--CCCCccCCCCCCCCChHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALN-----LQRAINWV--GLDGTSLDKDPHSLSGGYKRR 168 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~-----~~~~l~~~--~l~~~~~~~~~~~LSgGqkqr 168 (245)
|++||||+|+|. +++.|++||+.+|.+... .++..+. +.+.++.+ |.+.. ......+||||||||
T Consensus 491 r~~i~~v~Q~~~--Lf~~TI~eNI~~g~~~~~-----~~~v~~a~~~a~l~~~i~~lp~G~~T~-vGe~G~~LSGGQkQR 562 (1321)
T 4f4c_A 491 RKNVAVVSQEPA--LFNCTIEENISLGKEGIT-----REEMVAACKMANAEKFIKTLPNGYNTL-VGDRGTQLSGGQKQR 562 (1321)
T ss_dssp HHHEEEECSSCC--CCSEEHHHHHHTTCTTCC-----HHHHHHHHHHTTCHHHHHHSTTTTSSE-ESSSSCCCCHHHHHH
T ss_pred hhcccccCCcce--eeCCchhHHHhhhcccch-----HHHHHHHHHHccchhHHHcCCCCCccE-ecCCCCCCCHHHHHH
Confidence 678999999994 457899999999843211 1111111 12334443 44433 466788999999999
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 169 LALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 169 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
++||||++.+|++||||||||+||+++.+.+.+.|.++.+++|+|+|||++..+ ..||+|++|++|+|+..+.
T Consensus 563 iaiARAl~~~~~IliLDE~tSaLD~~te~~i~~~l~~~~~~~T~iiiaHrls~i-~~aD~Iivl~~G~ive~Gt 635 (1321)
T 4f4c_A 563 IAIARALVRNPKILLLDEATSALDAESEGIVQQALDKAAKGRTTIIIAHRLSTI-RNADLIISCKNGQVVEVGD 635 (1321)
T ss_dssp HHHHHHHTTCCSEEEEESTTTTSCTTTHHHHHHHHHHHHTTSEEEEECSCTTTT-TTCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHccCCCEEEEecccccCCHHHHHHHHHHHHHHhCCCEEEEEcccHHHH-HhCCEEEEeeCCeeeccCC
Confidence 999999999999999999999999999999999999998899999999999976 5799999999999988653
|
| >3g5u_A MCG1178, multidrug resistance protein 1A; P-glycoprotein, PGP, cyclic peptide, membrane protein; 3.80A {Mus musculus} PDB: 3g61_A* 3g60_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.4e-47 Score=390.18 Aligned_cols=218 Identities=24% Similarity=0.345 Sum_probs=174.3
Q ss_pred eEEEEeEEEECCCC-ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGT-QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 17 ~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
.|+++||+++|++. ..++|+|+||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++...+. ..+
T Consensus 1030 ~i~~~~v~~~y~~~~~~~~l~~vsl~i~~Ge~v~ivG~sGsGKSTl~~~l~g~~~p~~G~I~i~g~~i~~~~~----~~~ 1105 (1284)
T 3g5u_A 1030 NVQFSGVVFNYPTRPSIPVLQGLSLEVKKGQTLALVGSSGCGKSTVVQLLERFYDPMAGSVFLDGKEIKQLNV----QWL 1105 (1284)
T ss_dssp CEEEEEEEBCCSCGGGCCSBSSCCEEECSSSEEEEECSSSTTHHHHHHHHTTSSCCSEEEEESSSSCTTSSCH----HHH
T ss_pred cEEEEEEEEECCCCCCCeeecceeEEEcCCCEEEEECCCCCCHHHHHHHHhcCcCCCCCEEEECCEEcccCCH----HHH
Confidence 59999999999753 2469999999999999999999999999999999999999999999999999864321 224
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhH-HH-HHHHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQL-KE-YLALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLAL 171 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~-~~-~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~i 171 (245)
++++|||||+|. ++..|++||+.++.+........ .. .....+.+.++.+ |++.. ....+.+|||||||||+|
T Consensus 1106 r~~i~~v~Q~~~--l~~~ti~eNi~~~~~~~~~~~~~i~~~~~~~~~~~~i~~l~~gldt~-vge~G~~LSgGq~Qrv~i 1182 (1284)
T 3g5u_A 1106 RAQLGIVSQEPI--LFDCSIAENIAYGDNSRVVSYEEIVRAAKEANIHQFIDSLPDKYNTR-VGDKGTQLSGGQKQRIAI 1182 (1284)
T ss_dssp TTSCEEEESSCC--CCSSBHHHHHTCCCSSCCCCHHHHHHHHHHHTCHHHHSSTTTGGGCB-CSTTSCSSCHHHHHHHHH
T ss_pred HhceEEECCCCc--cccccHHHHHhccCCCCCCCHHHHHHHHHHhCcHHHHHhCccccccc-cCCCCCccCHHHHHHHHH
Confidence 678999999983 45789999999874321111100 00 0011122223222 23222 355678999999999999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 172 AIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 172 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
||||+.+|++|||||||++||+.+.+.+.+.|+++.+++|+|+||||++.+. .||||++|++|+++..+.
T Consensus 1183 ARal~~~p~iLiLDEpTs~lD~~~~~~i~~~l~~~~~~~tvi~isH~l~~i~-~~dri~vl~~G~i~~~g~ 1252 (1284)
T 3g5u_A 1183 ARALVRQPHILLLDEATSALDTESEKVVQEALDKAREGRTCIVIAHRLSTIQ-NADLIVVIQNGKVKEHGT 1252 (1284)
T ss_dssp HHHHHHCCSSEEEESCSSSCCHHHHHHHHHHHHHHSSSSCEEEECSCTTGGG-SCSEEEEEETBEEEEEEC
T ss_pred HHHHHcCCCEEEEeCCcccCCHHHHHHHHHHHHHhCCCCEEEEEecCHHHHH-cCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999998777899999999999985 599999999999987653
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=1.3e-46 Score=357.52 Aligned_cols=198 Identities=25% Similarity=0.259 Sum_probs=169.8
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
+.++++++|+++.|++ ..|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.+
T Consensus 354 ~~~~l~~~~l~~~~~~---~~l~~~~~~v~~Gei~~i~G~NGsGKSTLlk~l~Gl~~p~~G~I~~--------------- 415 (607)
T 3bk7_A 354 RETLVEYPRLVKDYGS---FKLEVEPGEIRKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKVEW--------------- 415 (607)
T ss_dssp CCEEEEECCEEEECSS---CEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBSCCCC---------------
T ss_pred CceEEEEeceEEEecc---eEEEecccccCCCCEEEEECCCCCCHHHHHHHHhcCCCCCceEEEE---------------
Confidence 3568999999999964 3699999999999999999999999999999999999999999865
Q ss_pred CCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
..++||+||++. .++..||.+++..... . .......+.++++.+++.+. .++++.+|||||||||+|||
T Consensus 416 --~~~i~~v~Q~~~-~~~~~tv~e~~~~~~~-----~--~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSGGe~QRv~iAr 484 (607)
T 3bk7_A 416 --DLTVAYKPQYIK-AEYEGTVYELLSKIDS-----S--KLNSNFYKTELLKPLGIIDL-YDRNVEDLSGGELQRVAIAA 484 (607)
T ss_dssp --CCCEEEECSSCC-CCCSSBHHHHHHHHHH-----H--HHHCHHHHHHTHHHHTCTTT-TTSBGGGCCHHHHHHHHHHH
T ss_pred --eeEEEEEecCcc-CCCCCcHHHHHHhhhc-----c--CCCHHHHHHHHHHHcCCchH-hcCChhhCCHHHHHHHHHHH
Confidence 135999999985 4467899888765200 0 00112356788999999875 79999999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh--cCceEEEEecChhHHHhhccEEEEEeC--CeEEEe
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLK--KELTILVVSHDLKEMAALVDHSWRMDM--GGFLVE 240 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~--~~~tiii~tHd~~~~~~~~d~v~~l~~--G~i~~~ 240 (245)
||+.+|++|||||||+|||+.++..++++|+++. .+.|||+||||++++..+|||+++|++ |+++..
T Consensus 485 aL~~~p~lLlLDEPt~~LD~~~~~~l~~~l~~l~~~~g~tvi~vsHd~~~~~~~adrv~vl~~~~g~~~~~ 555 (607)
T 3bk7_A 485 TLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLIVFEGEPGRHGRA 555 (607)
T ss_dssp HHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEE
T ss_pred HHHhCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEcCCcceEEec
Confidence 9999999999999999999999999999999985 368999999999999999999999985 665544
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=9.7e-47 Score=354.42 Aligned_cols=198 Identities=25% Similarity=0.265 Sum_probs=169.1
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
+.++++++|+++.|++ ..|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.+
T Consensus 284 ~~~~l~~~~l~~~~~~---~~l~~~~~~i~~Ge~~~i~G~NGsGKSTLlk~l~Gl~~p~~G~i~~--------------- 345 (538)
T 1yqt_A 284 RETLVTYPRLVKDYGS---FRLEVEPGEIKKGEVIGIVGPNGIGKTTFVKMLAGVEEPTEGKIEW--------------- 345 (538)
T ss_dssp CCEEEEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHHTSSCCSBCCCCC---------------
T ss_pred CCeEEEEeeEEEEECC---EEEEeCccccCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEE---------------
Confidence 4568999999999964 3699999999999999999999999999999999999999999864
Q ss_pred CCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
..++||+||++. ..+..||.+++..... . .....+.+.++++.+++.+. .++++.+|||||||||+|||
T Consensus 346 --~~~i~~v~Q~~~-~~~~~tv~~~~~~~~~-----~--~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSGGe~qrv~lAr 414 (538)
T 1yqt_A 346 --DLTVAYKPQYIK-ADYEGTVYELLSKIDA-----S--KLNSNFYKTELLKPLGIIDL-YDREVNELSGGELQRVAIAA 414 (538)
T ss_dssp --CCCEEEECSSCC-CCCSSBHHHHHHHHHH-----H--HHTCHHHHHHTTTTTTCGGG-TTSBGGGCCHHHHHHHHHHH
T ss_pred --CceEEEEecCCc-CCCCCcHHHHHHhhhc-----c--CCCHHHHHHHHHHHcCChhh-hcCChhhCCHHHHHHHHHHH
Confidence 135999999985 3467899887754200 0 00012346778999999864 79999999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh--cCceEEEEecChhHHHhhccEEEEEeC--CeEEEe
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLK--KELTILVVSHDLKEMAALVDHSWRMDM--GGFLVE 240 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~--~~~tiii~tHd~~~~~~~~d~v~~l~~--G~i~~~ 240 (245)
||+.+|++|||||||+|||+.++..++++|+++. .+.|||+||||++++..+|||+++|++ |+++..
T Consensus 415 aL~~~p~lLlLDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vsHd~~~~~~~~drv~vl~~~~~~~~~~ 485 (538)
T 1yqt_A 415 TLLRDADIYLLDEPSAYLDVEQRLAVSRAIRHLMEKNEKTALVVEHDVLMIDYVSDRLMVFEGEPGKYGRA 485 (538)
T ss_dssp HHTSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEEEEEETTTEEEE
T ss_pred HHHhCCCEEEEeCCcccCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCcceEeec
Confidence 9999999999999999999999999999999985 378999999999999999999999985 666544
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-46 Score=351.23 Aligned_cols=194 Identities=20% Similarity=0.178 Sum_probs=167.3
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
..++++++|+++.|++ ..|+++||+|++||+++|+||||||||||+|+|+|+++|++|+|.+++
T Consensus 266 ~~~~l~~~~l~~~~~~---~~l~~~~~~i~~Gei~~i~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~~------------- 329 (538)
T 3ozx_A 266 LKTKMKWTKIIKKLGD---FQLVVDNGEAKEGEIIGILGPNGIGKTTFARILVGEITADEGSVTPEK------------- 329 (538)
T ss_dssp CCEEEEECCEEEEETT---EEEEECCEEEETTCEEEEECCTTSSHHHHHHHHTTSSCCSBCCEESSC-------------
T ss_pred ccceEEEcceEEEECC---EEEEeccceECCCCEEEEECCCCCCHHHHHHHHhCCCCCCCcEEEECC-------------
Confidence 3567999999999964 358889999999999999999999999999999999999999998642
Q ss_pred CCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
..++|+||+.. ..+..||.+|+.+........ ....+.++++.+++.+. .++++.+|||||||||+|||
T Consensus 330 ---~~i~~~~q~~~-~~~~~tv~~~l~~~~~~~~~~------~~~~~~~~l~~~~l~~~-~~~~~~~LSGGq~QRv~iAr 398 (538)
T 3ozx_A 330 ---QILSYKPQRIF-PNYDGTVQQYLENASKDALST------SSWFFEEVTKRLNLHRL-LESNVNDLSGGELQKLYIAA 398 (538)
T ss_dssp ---CCEEEECSSCC-CCCSSBHHHHHHHHCSSTTCT------TSHHHHHTTTTTTGGGC-TTSBGGGCCHHHHHHHHHHH
T ss_pred ---eeeEeechhcc-cccCCCHHHHHHHhhhhccch------hHHHHHHHHHHcCCHHH-hcCChhhCCHHHHHHHHHHH
Confidence 35899999874 345689999998742211101 11235678899999875 79999999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeC
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDM 234 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~ 234 (245)
||+.+|++|||||||+|||+.++.+++++|+++.+ +.|||+||||++++..+||||++|++
T Consensus 399 aL~~~p~lLlLDEPT~gLD~~~~~~i~~~l~~l~~~~g~tvi~vsHdl~~~~~~aDri~vl~~ 461 (538)
T 3ozx_A 399 TLAKEADLYVLDQPSSYLDVEERYIVAKAIKRVTRERKAVTFIIDHDLSIHDYIADRIIVFKG 461 (538)
T ss_dssp HHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEE
T ss_pred HHHcCCCEEEEeCCccCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeC
Confidence 99999999999999999999999999999999853 68999999999999999999999985
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=3.7e-45 Score=359.82 Aligned_cols=211 Identities=22% Similarity=0.340 Sum_probs=166.5
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
+.++|+++|++++|++..+++|+|+||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|.
T Consensus 668 ~~~mL~v~nLs~~Y~g~~~~iL~dVSl~I~~GeivaIiGpNGSGKSTLLklLaGll~P~sG~I~~~~~------------ 735 (986)
T 2iw3_A 668 QKAIVKVTNMEFQYPGTSKPQITDINFQCSLSSRIAVIGPNGAGKSTLINVLTGELLPTSGEVYTHEN------------ 735 (986)
T ss_dssp TSEEEEEEEEEECCTTCSSCSEEEEEEEEETTCEEEECSCCCHHHHHHHHHHTTSSCCSEEEEEECTT------------
T ss_pred CCceEEEEeeEEEeCCCCceeeeccEEEEcCCCEEEEECCCCCCHHHHHHHHhCCCCCCceEEEEcCc------------
Confidence 45689999999999753357899999999999999999999999999999999999999999999641
Q ss_pred CCCCcEEEEecCCCC---CCCcccHHHHHHhcCCCC--------------------------------------------
Q 035832 94 LPPEKVGIVFQFPER---YFVADNVLDEVIFGWPRQ-------------------------------------------- 126 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~---~~~~~tv~e~l~~~~~~~-------------------------------------------- 126 (245)
.++||++|++.. .....|+.+++.+.+...
T Consensus 736 ---~~I~yv~Q~~~~~l~~~~~~t~~e~i~~~~q~g~d~~~~~~~~~~l~~ed~~~~~~~~~~~g~~r~~~~i~~r~~~~ 812 (986)
T 2iw3_A 736 ---CRIAYIKQHAFAHIESHLDKTPSEYIQWRFQTGEDRETMDRANRQINENDAEAMNKIFKIEGTPRRIAGIHSRRKFK 812 (986)
T ss_dssp ---CCEEEECHHHHHHGGGCTTSCHHHHHHHHTTTSSCTTTTTTTSCCCCSSCSSGGGCCEEETTEEEEEEEEEEEEEET
T ss_pred ---cceEeeccchhhhhhcccccCHHHHHHHHhhccchhhhhhhhhhccchhhhhhhhcccccccchhhhhhhhhhhhhc
Confidence 147888887421 011245555554311000
Q ss_pred ----------------------CC---------chh-----HHH------------------HHHHHHHHHHHHcCCCCc
Q 035832 127 ----------------------SG---------SIQ-----LKE------------------YLALNLQRAINWVGLDGT 152 (245)
Q Consensus 127 ----------------------~~---------~~~-----~~~------------------~~~~~~~~~l~~~~l~~~ 152 (245)
.. ... ..+ ....++.++++.+|+...
T Consensus 813 ~~~~~e~~~sv~ENi~l~~~~~~~lt~~en~~~~~~~l~~~~~~~v~~~d~~~~~~~g~~~~~~~~~i~~~Le~lGL~~~ 892 (986)
T 2iw3_A 813 NTYEYECSFLLGENIGMKSERWVPMMSVDNAWIPRGELVESHSKMVAEVDMKEALASGQFRPLTRKEIEEHCSMLGLDPE 892 (986)
T ss_dssp TEEEEEEEEEEEESTTSTTCEEEECCGGGCEEEEGGGTHHHHHHHHHHHHHHHHHHTTCCCCCCHHHHHHHHHHTTCCHH
T ss_pred ccchhhhhhhhhhhhhcccccccccchhhhhhhhhHHHhhhHhhhhhhhhhhhhhhhcccchhHHHHHHHHHHHcCCCch
Confidence 00 000 000 012457789999999753
Q ss_pred c-CCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEE
Q 035832 153 S-LDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWR 231 (245)
Q Consensus 153 ~-~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~ 231 (245)
. .++++.+|||||||||+|||||+.+|++|||||||+|||+.++..+.+.|+++ +.|||+||||++++..+||++++
T Consensus 893 ~~~~~~~~~LSGGQkQRVaLArAL~~~P~LLLLDEPT~gLD~~s~~~L~~~L~~~--g~tVIiISHD~e~v~~l~DrViv 970 (986)
T 2iw3_A 893 IVSHSRIRGLSGGQKVKLVLAAGTWQRPHLIVLDEPTNYLDRDSLGALSKALKEF--EGGVIIITHSAEFTKNLTEEVWA 970 (986)
T ss_dssp HHHHSCGGGCCHHHHHHHHHHHHHTTCCSEEEEECGGGTCCHHHHHHHHHHHHSC--SSEEEEECSCHHHHTTTCCEEEC
T ss_pred hhcCCCccccCHHHHHHHHHHHHHHhCCCEEEEECCccCCCHHHHHHHHHHHHHh--CCEEEEEECCHHHHHHhCCEEEE
Confidence 2 47899999999999999999999999999999999999999999999998776 46999999999999999999999
Q ss_pred EeCCeEEEec
Q 035832 232 MDMGGFLVEQ 241 (245)
Q Consensus 232 l~~G~i~~~~ 241 (245)
|++|+++..+
T Consensus 971 L~~G~Iv~~G 980 (986)
T 2iw3_A 971 VKDGRMTPSG 980 (986)
T ss_dssp CBTTBCCC--
T ss_pred EECCEEEEeC
Confidence 9999987644
|
| >3bk7_A ABC transporter ATP-binding protein; ABC ATPase, iron-sulfur cluster, adenosine diphosphate, nucleotide-binding; HET: ADP; 2.80A {Pyrococcus abyssi} PDB: 3j15_B* | Back alignment and structure |
|---|
Probab=100.00 E-value=6.7e-45 Score=345.73 Aligned_cols=206 Identities=23% Similarity=0.291 Sum_probs=165.2
Q ss_pred CCcceEEE--------EeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceE--------
Q 035832 13 CDYSCLEV--------RDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSI-------- 76 (245)
Q Consensus 13 ~~~~~l~~--------~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i-------- 76 (245)
|+..+|++ +|++++|++. ..+|+++| ++++||+++|+||||||||||+|+|+|+++|++|++
T Consensus 79 ~p~~~i~i~~l~~~~~~~ls~~yg~~-~~~l~~vs-~i~~Ge~~~LiG~NGsGKSTLlkiL~Gll~p~~G~~~~~~~~~~ 156 (607)
T 3bk7_A 79 CPFNAISIVNLPEQLDEDCVHRYGVN-AFVLYRLP-IVKDGMVVGIVGPNGTGKTTAVKILAGQLIPNLCEDNDSWDNVI 156 (607)
T ss_dssp CSSCCCEEEEECTTGGGSEEEECSTT-CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHTTSSCCCTTTTCCCHHHHH
T ss_pred CCcceEEEecCCccccCCeEEEECCC-CeeeCCCC-CCCCCCEEEEECCCCChHHHHHHHHhCCCCCCCCccccccchhh
Confidence 45557899 8999999642 24899999 999999999999999999999999999999999995
Q ss_pred -EEcCccCCCCCCCCCCCCCCCcEEEEecCCCCC--CCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCcc
Q 035832 77 -NIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERY--FVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTS 153 (245)
Q Consensus 77 -~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~--~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 153 (245)
.++|.++...... ....+..+++++|+.... ....|+.||+.... . ..++.++++.+||.+.
T Consensus 157 ~~~~G~~~~~~~~~--~~~~~~~i~~~~q~~~~~~~~~~~tv~e~l~~~~-~-----------~~~~~~~L~~lgL~~~- 221 (607)
T 3bk7_A 157 RAFRGNELQNYFER--LKNGEIRPVVKPQYVDLLPKAVKGKVRELLKKVD-E-----------VGKFEEVVKELELENV- 221 (607)
T ss_dssp HHTTTSTHHHHHHH--HHHTSCCCEEECSCGGGGGGTCCSBHHHHHHHTC-C-----------SSCHHHHHHHTTCTTG-
T ss_pred heeCCEehhhhhhh--hhhhhcceEEeechhhhchhhccccHHHHhhhhH-H-----------HHHHHHHHHHcCCCch-
Confidence 3445433110000 000124588999875311 11238999886521 0 1135678999999875
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEE
Q 035832 154 LDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRM 232 (245)
Q Consensus 154 ~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l 232 (245)
+++++.+|||||||||+|||||+.+|++|||||||++||+.++..++++|+++.+ +.|||+||||++++..+||++++|
T Consensus 222 ~~~~~~~LSGGekQRvaIAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvIivsHdl~~~~~~adri~vl 301 (607)
T 3bk7_A 222 LDRELHQLSGGELQRVAIAAALLRKAHFYFFDEPSSYLDIRQRLKVARVIRRLANEGKAVLVVEHDLAVLDYLSDVIHVV 301 (607)
T ss_dssp GGSBGGGCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEE
T ss_pred hCCChhhCCHHHHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEecChHHHHhhCCEEEEE
Confidence 7999999999999999999999999999999999999999999999999999964 689999999999999999999999
Q ss_pred eCC
Q 035832 233 DMG 235 (245)
Q Consensus 233 ~~G 235 (245)
+++
T Consensus 302 ~~~ 304 (607)
T 3bk7_A 302 YGE 304 (607)
T ss_dssp ESC
T ss_pred CCC
Confidence 864
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-44 Score=342.34 Aligned_cols=194 Identities=23% Similarity=0.277 Sum_probs=162.7
Q ss_pred EeEEEECCCCccceeeeeeEEEcCC-----CEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 21 RDVSYRPPGTQVDILNGVSFSLPEK-----SFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 21 ~~l~~~y~~~~~~il~~vsl~i~~G-----e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
.+++++|++. ..+++++||++.+| |+++|+||||||||||+|+|+|+++|++|+. + .
T Consensus 350 ~~~~~~y~~~-~~~l~~vsl~v~~G~~~~GEiv~iiG~NGsGKSTLlk~l~Gl~~p~~G~~------~-----------~ 411 (608)
T 3j16_B 350 ASRAFSYPSL-KKTQGDFVLNVEEGEFSDSEILVMMGENGTGKTTLIKLLAGALKPDEGQD------I-----------P 411 (608)
T ss_dssp SSSCCEECCE-EEECSSCEEEECCEECCTTCEEEEESCTTSSHHHHHHHHHTSSCCSBCCC------C-----------C
T ss_pred cceeEEecCc-ccccCceEEEEecCccccceEEEEECCCCCcHHHHHHHHhcCCCCCCCcC------c-----------c
Confidence 5677888642 45799999999999 7899999999999999999999999999962 1 0
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
...++|+||+.. ..+..||.+++......... . ...+.++++.+++.+. .++++.+|||||||||+|||||
T Consensus 412 ~~~i~~~~q~~~-~~~~~tv~e~~~~~~~~~~~----~---~~~~~~~l~~l~l~~~-~~~~~~~LSGGqkQRv~iAraL 482 (608)
T 3j16_B 412 KLNVSMKPQKIA-PKFPGTVRQLFFKKIRGQFL----N---PQFQTDVVKPLRIDDI-IDQEVQHLSGGELQRVAIVLAL 482 (608)
T ss_dssp SCCEEEECSSCC-CCCCSBHHHHHHHHCSSTTT----S---HHHHHHTHHHHTSTTT-SSSBSSSCCHHHHHHHHHHHHT
T ss_pred CCcEEEeccccc-ccCCccHHHHHHHHhhcccc----c---HHHHHHHHHHcCChhh-hcCChhhCCHHHHHHHHHHHHH
Confidence 246999999975 34467999988654221111 0 1235678899999875 7999999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh--cCceEEEEecChhHHHhhccEEEEEeC--CeEEEec
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLK--KELTILVVSHDLKEMAALVDHSWRMDM--GGFLVEQ 241 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~--~~~tiii~tHd~~~~~~~~d~v~~l~~--G~i~~~~ 241 (245)
+.+|++|||||||+|||+.++..++++|+++. .+.|||+||||++++..+|||+++|++ |+++..+
T Consensus 483 ~~~p~lLlLDEPT~gLD~~~~~~i~~ll~~l~~~~g~tviivtHdl~~~~~~aDrvivl~~~~g~~~~~g 552 (608)
T 3j16_B 483 GIPADIYLIDEPSAYLDSEQRIICSKVIRRFILHNKKTAFIVEHDFIMATYLADKVIVFEGIPSKNAHAR 552 (608)
T ss_dssp TSCCSEEEECCTTTTCCHHHHHHHHHHHHHHHHHHTCEEEEECSCHHHHHHHCSEEEECEEETTTEEECC
T ss_pred HhCCCEEEEECCCCCCCHHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEeCCCCeEEecC
Confidence 99999999999999999999999999999984 379999999999999999999999996 7777654
|
| >1yqt_A RNAse L inhibitor; ATP-binding cassette, ribosome biogenesis, hydrolyase/translation complex; HET: ADP; 1.90A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.7e-45 Score=342.39 Aligned_cols=200 Identities=22% Similarity=0.261 Sum_probs=158.8
Q ss_pred EEE-EeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceE---------EEcCccCCCCC
Q 035832 18 LEV-RDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSI---------NIRGYNNDGEP 87 (245)
Q Consensus 18 l~~-~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i---------~~~g~~~~~~~ 87 (245)
.++ +||+|+|++. ..+++++| +|++||+++|+||||||||||+|+|+|+++|++|++ .++|.++....
T Consensus 21 ~~~~~~ls~~yg~~-~~~l~~vs-~i~~Ge~~~LvG~NGaGKSTLlk~l~Gl~~p~~G~~~~~~~~~~~~~~g~~~~~~~ 98 (538)
T 1yqt_A 21 EQLEEDCVHRYGVN-AFVLYRLP-VVKEGMVVGIVGPNGTGKSTAVKILAGQLIPNLCGDNDSWDGVIRAFRGNELQNYF 98 (538)
T ss_dssp ---CCCEEEECSTT-CCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSHHHHHHHTTTSTHHHHH
T ss_pred hhHhcCcEEEECCc-cccccCcC-cCCCCCEEEEECCCCCCHHHHHHHHhCCCCCCCCccCcchhhhHHhhCCccHHHHH
Confidence 566 6999999642 24899999 999999999999999999999999999999999995 34454321100
Q ss_pred CCCCCCCCCCcEEEEecCCCCCCC---cccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChH
Q 035832 88 NNSPEPLPPEKVGIVFQFPERYFV---ADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGG 164 (245)
Q Consensus 88 ~~~~~~~~~~~i~~v~Q~~~~~~~---~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG 164 (245)
.. ....+..+++++|+.. +++ ..++.+++.... ...++.++++.+|+... +++++.+||||
T Consensus 99 ~~--~~~~~~~~~~~~q~~~-~~~~~~~~~v~e~~~~~~------------~~~~~~~~l~~lgl~~~-~~~~~~~LSgG 162 (538)
T 1yqt_A 99 EK--LKNGEIRPVVKPQYVD-LIPKAVKGKVIELLKKAD------------ETGKLEEVVKALELENV-LEREIQHLSGG 162 (538)
T ss_dssp HH--HHTTSCCCEEECSCGG-GSGGGCCSBHHHHHHHHC------------SSSCHHHHHHHTTCTTT-TTSBGGGCCHH
T ss_pred HH--HHHHhhhhhhhhhhhh-hcchhhhccHHHHHhhhh------------HHHHHHHHHHHcCCChh-hhCChhhCCHH
Confidence 00 0001245889999753 222 237888775321 01235678999999875 79999999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCC
Q 035832 165 YKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMG 235 (245)
Q Consensus 165 qkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G 235 (245)
|||||+|||||+.+|++|||||||++||+.+++.++++|+++++ +.|||+||||++++..+||++++|++|
T Consensus 163 ekQRv~iAraL~~~P~lLlLDEPTs~LD~~~~~~l~~~L~~l~~~g~tvi~vsHd~~~~~~~~dri~vl~~~ 234 (538)
T 1yqt_A 163 ELQRVAIAAALLRNATFYFFDEPSSYLDIRQRLNAARAIRRLSEEGKSVLVVEHDLAVLDYLSDIIHVVYGE 234 (538)
T ss_dssp HHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCHHHHHHHCSEEEEEEEE
T ss_pred HHHHHHHHHHHhcCCCEEEEECCcccCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEcCc
Confidence 99999999999999999999999999999999999999999864 689999999999999999999999854
|
| >2iw3_A Elongation factor 3A; acetylation, ATP-binding, protein biosynthesis, nucleotide-binding, phosphorylation, RNA- binding, rRNA-binding; HET: ADP; 2.4A {Saccharomyces cerevisiae} PDB: 2iwh_A* 2ix3_A 2ix8_A | Back alignment and structure |
|---|
Probab=100.00 E-value=9.5e-43 Score=342.76 Aligned_cols=191 Identities=24% Similarity=0.252 Sum_probs=160.7
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.|...|++++|++ +.+|+|+||+|++||+++|+||||||||||+|+|+| |+| +|.+.. ..
T Consensus 435 ~L~~~~ls~~yg~--~~iL~~vsl~I~~Ge~v~LiGpNGsGKSTLLk~Lag------G~i--~g~~~~----------~~ 494 (986)
T 2iw3_A 435 DLCNCEFSLAYGA--KILLNKTQLRLKRARRYGICGPNGCGKSTLMRAIAN------GQV--DGFPTQ----------EE 494 (986)
T ss_dssp EEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHH------TCS--TTCCCT----------TT
T ss_pred eeEEeeEEEEECC--EEeEecceEEEcCCCEEEEECCCCCCHHHHHHHHhC------CCc--CCCccc----------cc
Confidence 4777799999964 579999999999999999999999999999999995 543 332210 01
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
.+++|++|++...++.+|+.+|+.+. . .. . .+++.++++.+|+.....++++.+|||||||||+|||||+
T Consensus 495 ~~~~~v~q~~~~~~~~ltv~e~l~~~--~-~~-~------~~~v~~~L~~lgL~~~~~~~~~~~LSGGqkQRvaLArAL~ 564 (986)
T 2iw3_A 495 CRTVYVEHDIDGTHSDTSVLDFVFES--G-VG-T------KEAIKDKLIEFGFTDEMIAMPISALSGGWKMKLALARAVL 564 (986)
T ss_dssp SCEEETTCCCCCCCTTSBHHHHHHTT--C-SS-C------HHHHHHHHHHTTCCHHHHHSBGGGCCHHHHHHHHHHHHHH
T ss_pred eeEEEEcccccccccCCcHHHHHHHh--h-cC-H------HHHHHHHHHHcCCChhhhcCCcccCCHHHHHHHHHHHHHh
Confidence 24789998864456778999999862 1 11 1 3457788999999532368999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEE
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLV 239 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~ 239 (245)
.+|++|||||||++||+.+++.++++|++ .+.|||++|||++++..+||++++|++|+++.
T Consensus 565 ~~P~lLLLDEPTs~LD~~~~~~l~~~L~~--~g~tvIivSHdl~~l~~~adrii~L~~G~iv~ 625 (986)
T 2iw3_A 565 RNADILLLDEPTNHLDTVNVAWLVNYLNT--CGITSITISHDSVFLDNVCEYIINYEGLKLRK 625 (986)
T ss_dssp TTCSEEEEESTTTTCCHHHHHHHHHHHHH--SCSEEEEECSCHHHHHHHCSEEEEEETTEEEE
T ss_pred cCCCEEEEECCccCCCHHHHHHHHHHHHh--CCCEEEEEECCHHHHHHhCCEEEEEECCeeec
Confidence 99999999999999999999999999998 57899999999999999999999999999974
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.5e-43 Score=340.70 Aligned_cols=202 Identities=26% Similarity=0.352 Sum_probs=135.2
Q ss_pred cceeeeeeEEEcCCCEEEEECCCCCcHHHHH---------------------HHHhCCCCCC-------cceEEEcCccC
Q 035832 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLL---------------------QLLAGLSKPT-------SGSINIRGYNN 83 (245)
Q Consensus 32 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl---------------------~~l~Gl~~p~-------~G~i~~~g~~~ 83 (245)
..+|+||||+|++||++||+||||||||||+ ++++|+.+|+ .|.|.+++.+.
T Consensus 31 ~~~L~~vsl~i~~Ge~~~liGpNGaGKSTLl~~~~~~~~~~~~~~~l~~~~~~~l~~l~~~~~~~i~~~~~~i~~~~~~~ 110 (670)
T 3ux8_A 31 AHNLKNIDVEIPRGKLVVLTGLSGSGKSSLAFDTIYAEGQRRYVESLSAYARQFLGQMEKPDVDAIEGLSPAISIDQKTT 110 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHTC--------------CCCSEEESCCCEEEESSCC-
T ss_pred ccceeccEEEECCCCEEEEECCCCCCHHHHhcccccccccccccccchhhhhhhhcccccCCccceeccccceEecCchh
Confidence 4589999999999999999999999999998 9999999998 45555655543
Q ss_pred CCCCCCCCCCCCCCcEEEEecCCCC------------------CCCcccHHHHHHhcCCCCCCchh--HHHH---HHHHH
Q 035832 84 DGEPNNSPEPLPPEKVGIVFQFPER------------------YFVADNVLDEVIFGWPRQSGSIQ--LKEY---LALNL 140 (245)
Q Consensus 84 ~~~~~~~~~~~~~~~i~~v~Q~~~~------------------~~~~~tv~e~l~~~~~~~~~~~~--~~~~---~~~~~ 140 (245)
... .+..+|+++|.+.. .+..+||.||+.+.......... .... .....
T Consensus 111 ~~~--------~~~~ig~v~q~~~~~~~~~~~~~~~~~~~~~~~~~~~tv~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 182 (670)
T 3ux8_A 111 SRN--------PRSTVGTVTEIYDYLRLLFARIGRLVGGKHIGEVTAMSVTEALAFFDGLELTEKEAQIARLILREIRDR 182 (670)
T ss_dssp ------------CCBHHHHTTCC-------------------------CC--------------------------CHHH
T ss_pred hcc--------chhceeeeechhhhHHHHHhhhcccccccccccccCCcHHHHHHHhhccccchhhhHHHHHHHHHHHHH
Confidence 221 12344555443321 23467899998774211000000 0000 00112
Q ss_pred HHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEec
Q 035832 141 QRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPD--LLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSH 217 (245)
Q Consensus 141 ~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~--llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tH 217 (245)
.++++.+||.+..+++++.+|||||||||+|||||+.+|+ +|||||||+|||+.++..++++|+++++ +.|||+|||
T Consensus 183 ~~~l~~~gL~~~~~~~~~~~LSGGe~QRv~iArAL~~~p~~~lLlLDEPtsgLD~~~~~~l~~~l~~l~~~g~tvi~vtH 262 (670)
T 3ux8_A 183 LGFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGVLYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEH 262 (670)
T ss_dssp HHHHHHTTCTTCCTTCBGGGSCHHHHHHHHHHHHHHTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHHTTCEEEEECC
T ss_pred HHHHHHcCCchhhhcCCcccCCHHHHHHHHHHHHHhhCCCCCEEEEECCccCCCHHHHHHHHHHHHHHHHcCCEEEEEeC
Confidence 2458889998654689999999999999999999999998 9999999999999999999999999964 689999999
Q ss_pred ChhHHHhhccEEEEE------eCCeEEEecc
Q 035832 218 DLKEMAALVDHSWRM------DMGGFLVEQR 242 (245)
Q Consensus 218 d~~~~~~~~d~v~~l------~~G~i~~~~~ 242 (245)
|++.+. .||++++| ++|+++.++.
T Consensus 263 d~~~~~-~~d~ii~l~~g~~~~~G~i~~~g~ 292 (670)
T 3ux8_A 263 DEDTML-AADYLIDIGPGAGIHGGEVVAAGT 292 (670)
T ss_dssp CHHHHH-HCSEEEEECSSSGGGCCSEEEEEC
T ss_pred CHHHHh-hCCEEEEecccccccCCEEEEecC
Confidence 999765 69999999 8899987653
|
| >3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=100.00 E-value=3.8e-41 Score=316.11 Aligned_cols=198 Identities=25% Similarity=0.268 Sum_probs=151.9
Q ss_pred EeEEEECCCCccceeeeeeEEEc-CCCEEEEECCCCCcHHHHHHHHhCCCCCCcceE-----------EEcCccCCCCCC
Q 035832 21 RDVSYRPPGTQVDILNGVSFSLP-EKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSI-----------NIRGYNNDGEPN 88 (245)
Q Consensus 21 ~~l~~~y~~~~~~il~~vsl~i~-~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i-----------~~~g~~~~~~~~ 88 (245)
++.+.+|+.+ -++-..|.+. +||++||+||||||||||+|+|+|+++|++|+| .++|.++.....
T Consensus 3 ~~~~~~~~~~---~f~l~~l~~~~~Gei~gLiGpNGaGKSTLlkiL~Gl~~p~~G~i~~~~~~~~~~~~~~g~~i~~~~~ 79 (538)
T 3ozx_A 3 GEVIHRYKVN---GFKLFGLPTPKNNTILGVLGKNGVGKTTVLKILAGEIIPNFGDPNSKVGKDEVLKRFRGKEIYNYFK 79 (538)
T ss_dssp CCEEEESSTT---SCEEECCCCCCTTEEEEEECCTTSSHHHHHHHHTTSSCCCTTCTTSCCCHHHHHHHHTTSTTHHHHH
T ss_pred CCCceecCCC---ceeecCCCCCCCCCEEEEECCCCCcHHHHHHHHhcCCCCCCCccccccchhhHHhhcCCeeHHHHHH
Confidence 3567899753 3566666665 899999999999999999999999999999998 566655421000
Q ss_pred CCCCCCCCCcEEEEecCCCC--CCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHH
Q 035832 89 NSPEPLPPEKVGIVFQFPER--YFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYK 166 (245)
Q Consensus 89 ~~~~~~~~~~i~~v~Q~~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqk 166 (245)
.. ......+...+|.... .+...++.+++.... ...++.++++.+++... .++++.+||||||
T Consensus 80 ~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~------------~~~~~~~~l~~l~l~~~-~~~~~~~LSgGe~ 144 (538)
T 3ozx_A 80 EL--YSNELKIVHKIQYVEYASKFLKGTVNEILTKID------------ERGKKDEVKELLNMTNL-WNKDANILSGGGL 144 (538)
T ss_dssp HH--HTTCCCEEEECSCTTGGGTTCCSBHHHHHHHHC------------CSSCHHHHHHHTTCGGG-TTSBGGGCCHHHH
T ss_pred HH--hhcccchhhccchhhhhhhhccCcHHHHhhcch------------hHHHHHHHHHHcCCchh-hcCChhhCCHHHH
Confidence 00 0001234455554321 122346766554320 01235677899999875 7999999999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCe
Q 035832 167 RRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGG 236 (245)
Q Consensus 167 qrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~ 236 (245)
|||+|||||+.+|++|||||||++||+.++..++++|+++++++|||+||||++++..+||+|++|++|.
T Consensus 145 Qrv~iA~aL~~~p~illlDEPts~LD~~~~~~l~~~l~~l~~g~tii~vsHdl~~~~~~~d~i~vl~~~~ 214 (538)
T 3ozx_A 145 QRLLVAASLLREADVYIFDQPSSYLDVRERMNMAKAIRELLKNKYVIVVDHDLIVLDYLTDLIHIIYGES 214 (538)
T ss_dssp HHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHCTTSEEEEECSCHHHHHHHCSEEEEEEEET
T ss_pred HHHHHHHHHHcCCCEEEEECCcccCCHHHHHHHHHHHHHHhCCCEEEEEEeChHHHHhhCCEEEEecCCc
Confidence 9999999999999999999999999999999999999999768999999999999999999999998643
|
| >3j16_B RLI1P; ribosome recycling, translation, eukarya, ribosome; HET: ATP; 7.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=2.5e-41 Score=320.95 Aligned_cols=210 Identities=24% Similarity=0.317 Sum_probs=152.8
Q ss_pred cCCcceEEEEe--------EEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEE------
Q 035832 12 SCDYSCLEVRD--------VSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN------ 77 (245)
Q Consensus 12 ~~~~~~l~~~~--------l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~------ 77 (245)
.|+-..|++.| ++++|+.. ...+++++ .+++||+++|+||||||||||+|+|+|+++|++|+|.
T Consensus 64 ~cp~~~i~i~nl~~~~~~~~~~~Y~~~-~~~l~~l~-~~~~Gei~~LvGpNGaGKSTLLkiL~Gll~P~~G~i~~~~~~~ 141 (608)
T 3j16_B 64 KCPFDAIQIINLPTNLEAHVTHRYSAN-SFKLHRLP-TPRPGQVLGLVGTNGIGKSTALKILAGKQKPNLGRFDDPPEWQ 141 (608)
T ss_dssp HCSSCCEEEEEESSSSSTTEEEECSTT-SCEEECCC-CCCTTSEEEEECCTTSSHHHHHHHHHTSSCCCTTTTCCSSCHH
T ss_pred cCCccceEEecCChhhcCCeEEEECCC-ceeecCCC-CCCCCCEEEEECCCCChHHHHHHHHhcCCCCCCceEecccchh
Confidence 35555677765 56788653 34677777 6899999999999999999999999999999999982
Q ss_pred -----EcCccCCCCCCCCCCCCCCCcEEEEecCCCCC-----CCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHc
Q 035832 78 -----IRGYNNDGEPNNSPEPLPPEKVGIVFQFPERY-----FVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWV 147 (245)
Q Consensus 78 -----~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~-----~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 147 (245)
+.|.++.......... .....+.+|..... -...++.+++..... ....++.++++.+
T Consensus 142 ~~~~~~~g~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~v~~~l~~~~~----------~~~~~~~~~l~~~ 209 (608)
T 3j16_B 142 EIIKYFRGSELQNYFTKMLED--DIKAIIKPQYVDNIPRAIKGPVQKVGELLKLRME----------KSPEDVKRYIKIL 209 (608)
T ss_dssp HHHHHTTTSTHHHHHHHHHHT--SCCCEEECCCTTTHHHHCSSSSSHHHHHHHHHCC----------SCHHHHHHHHHHH
T ss_pred hhhheecChhhhhhhhHHHHH--hhhhhhchhhhhhhhhhhcchhhHHHHHHhhhhh----------hHHHHHHHHHHHc
Confidence 2222110000000000 00122333432110 001134444332100 0123577889999
Q ss_pred CCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhc
Q 035832 148 GLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALV 226 (245)
Q Consensus 148 ~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~ 226 (245)
|+... +++++.+|||||||||+|||||+.+|++|||||||++||+.++..++++|+++++ +.|||+||||++++..+|
T Consensus 210 gl~~~-~~~~~~~LSgGe~Qrv~iAraL~~~p~llllDEPts~LD~~~~~~l~~~l~~l~~~g~tvi~vtHdl~~~~~~~ 288 (608)
T 3j16_B 210 QLENV-LKRDIEKLSGGELQRFAIGMSCVQEADVYMFDEPSSYLDVKQRLNAAQIIRSLLAPTKYVICVEHDLSVLDYLS 288 (608)
T ss_dssp TCTGG-GGSCTTTCCHHHHHHHHHHHHHHSCCSEEEEECTTTTCCHHHHHHHHHHHHGGGTTTCEEEEECSCHHHHHHHC
T ss_pred CCcch-hCCChHHCCHHHHHHHHHHHHHHhCCCEEEEECcccCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhC
Confidence 99875 7999999999999999999999999999999999999999999999999999975 689999999999999999
Q ss_pred cEEEEEeCCe
Q 035832 227 DHSWRMDMGG 236 (245)
Q Consensus 227 d~v~~l~~G~ 236 (245)
|++++|++|.
T Consensus 289 drv~vl~~~~ 298 (608)
T 3j16_B 289 DFVCIIYGVP 298 (608)
T ss_dssp SEEEEEESCT
T ss_pred CEEEEEeCCc
Confidence 9999998754
|
| >3ux8_A Excinuclease ABC, A subunit; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, DN binding protein; HET: ADP; 2.10A {Geobacillus} | Back alignment and structure |
|---|
Probab=100.00 E-value=5.6e-40 Score=315.89 Aligned_cols=200 Identities=27% Similarity=0.298 Sum_probs=147.7
Q ss_pred cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHh----------------------CCCCCCcceEEEcCccCCCCCCC
Q 035832 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLA----------------------GLSKPTSGSINIRGYNNDGEPNN 89 (245)
Q Consensus 32 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~----------------------Gl~~p~~G~i~~~g~~~~~~~~~ 89 (245)
..+|+||||+|++||+++|+||||||||||+++|+ |+..+ .|.|.+++.++...+..
T Consensus 335 ~~~L~~vsl~I~~Ge~vaIiGpnGsGKSTLl~~i~~~~~~~~~~~~~~~~g~~~~i~gl~~~-~~~i~~~~~~~~~~~~~ 413 (670)
T 3ux8_A 335 EHNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHL-DKVIDIDQSPIGRTPRS 413 (670)
T ss_dssp STTCCSEEEEEETTSEEEEECSTTSSHHHHHTTTHHHHHHHHHHCCCSCCCSCSEEECGGGC-SEEEECCSSCSCSSTTC
T ss_pred ccccccceeEecCCCEEEEEeeCCCCHHHHHHHHHHHHHHHHhhhccccccccccccccccc-CceeEeccccCCCCCCc
Confidence 35799999999999999999999999999998753 44444 46888888776432210
Q ss_pred CC-------------------------------------CCCCCCcEEEEecCCCC------------------------
Q 035832 90 SP-------------------------------------EPLPPEKVGIVFQFPER------------------------ 108 (245)
Q Consensus 90 ~~-------------------------------------~~~~~~~i~~v~Q~~~~------------------------ 108 (245)
.. ........|+++|+...
T Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (670)
T 3ux8_A 414 NPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCEVCHGKRYNRETLEVT 493 (670)
T ss_dssp CHHHHHTHHHHHHHHHHTSHHHHHHTCCGGGGCTTSTTTBCTTTTTCCC------------CCCTTTTTCCBCHHHHTCC
T ss_pred chhhhhhhhHHHHHHhcccchhhhcccccccccccCCCCccccccccceEeeecccccccccccccccCcccChhhhhee
Confidence 00 00001122333333210
Q ss_pred -------CCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCC-
Q 035832 109 -------YFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPD- 180 (245)
Q Consensus 109 -------~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~- 180 (245)
.+..+|+.||+.+... . . ...+..+.++.+++....+++++.+|||||||||+|||||+.+|+
T Consensus 494 ~~~~~~~~~~~ltv~e~l~~~~~----~---~--~~~~~~~~l~~~~l~~~~~~~~~~~LSgG~~qrv~iAraL~~~p~~ 564 (670)
T 3ux8_A 494 YKGKNIAEVLDMTVEDALDFFAS----I---P--KIKRKLETLYDVGLGYMKLGQPATTLSGGEAQRVKLAAELHRRSNG 564 (670)
T ss_dssp BTTBCHHHHHTSBHHHHHHHTTT----C---H--HHHHHHHHHHHTTCTTSBTTCCGGGCCHHHHHHHHHHHHHHSCCCS
T ss_pred ecCCCHHHHhhCCHHHHHHHHHH----h---h--hHHHHHHHHHHcCCchhhccCCchhCCHHHHHHHHHHHHHhhCCCC
Confidence 0113688888887421 1 1 112345678889997544689999999999999999999999874
Q ss_pred --EEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEE------eCCeEEEecc
Q 035832 181 --LLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRM------DMGGFLVEQR 242 (245)
Q Consensus 181 --llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l------~~G~i~~~~~ 242 (245)
+|||||||+|||+.++..++++|+++++ +.|||+||||++.+ ..||||++| ++|+++.++.
T Consensus 565 p~llllDEPt~~LD~~~~~~i~~~l~~l~~~g~tvi~vtHd~~~~-~~~d~i~~l~~~~g~~~G~i~~~g~ 634 (670)
T 3ux8_A 565 RTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVI-KTADYIIDLGPEGGDRGGQIVAVGT 634 (670)
T ss_dssp CEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEEEESSSGGGCCEEEEEEC
T ss_pred CcEEEEeCCCCCCCHHHHHHHHHHHHHHHHCCCEEEEEeCCHHHH-HhCCEEEEecCCcCCCCCEEEEecC
Confidence 9999999999999999999999999974 69999999999987 579999999 8999998754
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=7.6e-37 Score=298.04 Aligned_cols=216 Identities=22% Similarity=0.261 Sum_probs=154.0
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHH-HhCCC-------CC--------------
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQL-LAGLS-------KP-------------- 71 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~-l~Gl~-------~p-------------- 71 (245)
+.+.|+++|+++ .+|+||||+|++||+++|+|+||||||||++. |+|++ +|
T Consensus 499 ~~~~L~v~~l~~-------~~L~~vsl~i~~Geiv~I~G~nGSGKSTLl~~~L~g~l~~~~g~~~~~~g~~~~~~~~~~~ 571 (842)
T 2vf7_A 499 PAGWLELNGVTR-------NNLDNLDVRFPLGVMTSVTGVSGSGKSTLVSQALVDALAAHFGQPVNPDPEDDEDPADHTA 571 (842)
T ss_dssp CSCEEEEEEEEE-------TTEEEEEEEEESSSEEEEECCTTSSHHHHCCCCCHHHHHHHTTC-----------------
T ss_pred CCceEEEEeeee-------cccccceEEEcCCCEEEEEcCCCcCHHHHHHHHHHHHHHHHhcCCCCcccccccccccccc
Confidence 345799999975 15999999999999999999999999999996 66543 23
Q ss_pred ----Ccc-------eEEEcCccCCCCCCCCCC------C-------------------------------CCCCcEEEEe
Q 035832 72 ----TSG-------SINIRGYNNDGEPNNSPE------P-------------------------------LPPEKVGIVF 103 (245)
Q Consensus 72 ----~~G-------~i~~~g~~~~~~~~~~~~------~-------------------------------~~~~~i~~v~ 103 (245)
.+| .|.+++.++...++.... . ...+..|++.
T Consensus 572 ~~~~~~G~~~~~~~~i~vdq~~i~~~~rs~~at~~~~~~~ir~~fa~~~~~r~~g~~~~~fs~n~~~g~c~~c~g~G~~~ 651 (842)
T 2vf7_A 572 GSARLGGDLAQITRLVRVDQKPIGRTPRSNMATYTGLFDQVRKLFAATPLAKKRGYNAGRFSFNVKGGRCEHCQGEGWVM 651 (842)
T ss_dssp CCCEEEESGGGCCEEEEECSSCSCSSTTCCHHHHSSTHHHHHHHHHTSHHHHHTTCCGGGGCSSSTTTBCTTTTTCSEEE
T ss_pred ccccccCcccccceEEEECCeeCCCCccccchhhhhHHHHHHHHHhcChHHHhcCCccccccccccccccccccCCCccc
Confidence 356 678888776432211000 0 0001122221
Q ss_pred cCCC-----------------------CCCCcccHHHHHHhcCCCC---CCchhHHHHHHHHHHHHHHHcCCCCccCCCC
Q 035832 104 QFPE-----------------------RYFVADNVLDEVIFGWPRQ---SGSIQLKEYLALNLQRAINWVGLDGTSLDKD 157 (245)
Q Consensus 104 Q~~~-----------------------~~~~~~tv~e~l~~~~~~~---~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 157 (245)
.+.. ..+...++.|++.+..... .... . ...++.++++.+||....++++
T Consensus 652 ~~~~f~~~v~~~c~~c~G~r~~~e~l~v~~~~~si~e~l~ltv~e~l~~~~~~--~--~~~~~~~~L~~~gL~~~~l~~~ 727 (842)
T 2vf7_A 652 VELLFLPSVYAPCPVCHGTRYNAETLEVEYRGKNIADVLALTVDEAHDFFADE--S--AIFRALDTLREVGLGYLRLGQP 727 (842)
T ss_dssp ETTCSSSCEEEECTTTTTCCBCTTGGGCCBTTBCHHHHHTCBHHHHHHHTTTS--H--HHHHHHHHHHHTTCTTSBTTCC
T ss_pred hhhhcCCccceecccccCcccchhhHhhhhcCCCHHHHHhccHHHHHHHhhcc--h--HHHHHHHHHHHcCCCcccccCC
Confidence 1110 0011234444443210000 0000 1 1235678999999986446899
Q ss_pred CCCCChHHHHHHHHHHHHhhC---CCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEE-
Q 035832 158 PHSLSGGYKRRLALAIQLVQV---PDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRM- 232 (245)
Q Consensus 158 ~~~LSgGqkqrv~iAral~~~---p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l- 232 (245)
+.+|||||||||+||++|+.+ |++|||||||+|||+..++.++++|+++.+ +.|||+||||++++ ..||+|++|
T Consensus 728 ~~~LSGGekQRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~tVIvisHdl~~i-~~aDrii~L~ 806 (842)
T 2vf7_A 728 ATELSGGEAQRIKLATELRRSGRGGTVYVLDEPTTGLHPADVERLQRQLVKLVDAGNTVIAVEHKMQVV-AASDWVLDIG 806 (842)
T ss_dssp GGGCCHHHHHHHHHHHTTSSCCSSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEEEC
T ss_pred cccCCHHHHHHHHHHHHHHhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEEEEEC
Confidence 999999999999999999996 799999999999999999999999999964 69999999999998 789999999
Q ss_pred -----eCCeEEEec
Q 035832 233 -----DMGGFLVEQ 241 (245)
Q Consensus 233 -----~~G~i~~~~ 241 (245)
++|+++.++
T Consensus 807 p~~g~~~G~Iv~~g 820 (842)
T 2vf7_A 807 PGAGEDGGRLVAQG 820 (842)
T ss_dssp SSSGGGCCSEEEEE
T ss_pred CCCCCCCCEEEEEc
Confidence 689998764
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-36 Score=299.23 Aligned_cols=208 Identities=25% Similarity=0.326 Sum_probs=151.1
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHH---------HHHhCCCCCC------cc------e
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLL---------QLLAGLSKPT------SG------S 75 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl---------~~l~Gl~~p~------~G------~ 75 (245)
.+++++++ ...|+||||+|++|++++|+||||||||||+ +.+.+...+. +| .
T Consensus 589 ~l~v~~~~-------~~~Lk~Vsl~I~~Geiv~I~G~SGSGKSTLl~~~l~~~l~~~l~~~~~~~g~~~~~~G~~~i~~~ 661 (916)
T 3pih_A 589 SLKIKGVR-------HNNLKNIDVEIPLGVFVCVTGVSGSGKSSLVMETLYPALMNLLHKTKLPAGEFDSIEGHENIDKM 661 (916)
T ss_dssp EEEEEEEC-------STTCCSEEEEEESSSEEEEECSTTSSHHHHHHHTHHHHHHHHHHCCCCCCCCCSEEECGGGCCEE
T ss_pred eEEEeeec-------cccccccceEEcCCcEEEEEccCCCChhhhHHHHHHHHHHHHhccccccccccccccccccccce
Confidence 45555553 2469999999999999999999999999997 4555544433 22 2
Q ss_pred EEEcCccCCCCCCCC-------------------------------------CCCCCCCcEEEEecCCCCCCC-------
Q 035832 76 INIRGYNNDGEPNNS-------------------------------------PEPLPPEKVGIVFQFPERYFV------- 111 (245)
Q Consensus 76 i~~~g~~~~~~~~~~-------------------------------------~~~~~~~~i~~v~Q~~~~~~~------- 111 (245)
+.++..++....... ......+..|+++++.. +++
T Consensus 662 i~idq~pig~~~rs~~at~~~~~~~ir~lfa~~~~a~~~g~~~~~fs~n~~~grc~~c~g~G~i~~e~~-flp~~~v~c~ 740 (916)
T 3pih_A 662 IAIDQSPIGRTPRSNPATYTKVFDEIRSLFAMTPAAKARGYNKSRFSFNLKGGRCEACQGQGYVKIEML-FLPDVYVECD 740 (916)
T ss_dssp EEECSCCCCCCTTCCHHHHSSHHHHHHHHHTTSHHHHHSSCCGGGGCTTSTTTBCTTTTTSSEEEECCT-TSCCEEEECT
T ss_pred EeeccccccccccccccchhhhHHHHHHHhccchHHHhcccccccccccccccccccccCcceEEEeee-ccCcceeecc
Confidence 444443332211100 00001234577777653 222
Q ss_pred -------------------------cccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHH
Q 035832 112 -------------------------ADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYK 166 (245)
Q Consensus 112 -------------------------~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqk 166 (245)
.+|+.+++.|... . ....+..++++.+||....+++++.+||||||
T Consensus 741 ~c~g~r~~~e~l~i~~~g~~i~~vl~~tv~eal~f~~~----~-----~~~~~~~~~L~~vGL~~~~lgq~~~~LSGGEr 811 (916)
T 3pih_A 741 VCKGKRYNRETLEITYKGKNISDILDMTVDEALEFFKN----I-----PSIKRTLQVLHDVGLGYVKLGQPATTLSGGEA 811 (916)
T ss_dssp TTTTSCBCTTGGGCCBTTBCHHHHHSSBHHHHHHHTTT----C-----HHHHHHHHHHHHTTGGGSBTTCCSTTCCHHHH
T ss_pred cccccccchhhhhhhhccCCHHHHhhCCHHHHHHHHhc----c-----hhHHHHHHHHHHcCCchhhccCCccCCCHHHH
Confidence 2456666655310 0 11234667899999976556899999999999
Q ss_pred HHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEE------eCCe
Q 035832 167 RRLALAIQLVQVP---DLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRM------DMGG 236 (245)
Q Consensus 167 qrv~iAral~~~p---~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l------~~G~ 236 (245)
|||+|||||+.+| +||||||||+|||+..++.++++|+++.+ +.|||+||||++.+. .||+|++| ++|+
T Consensus 812 QRV~LAraL~~~p~~p~LLILDEPTsGLD~~~~~~L~~lL~~L~~~G~TVIvI~HdL~~i~-~ADrIivLgp~gg~~~G~ 890 (916)
T 3pih_A 812 QRIKLASELRKRDTGRTLYILDEPTVGLHFEDVRKLVEVLHRLVDRGNTVIVIEHNLDVIK-NADHIIDLGPEGGKEGGY 890 (916)
T ss_dssp HHHHHHHHHTSCCCSSEEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHHT-TCSEEEEEESSSGGGCCE
T ss_pred HHHHHHHHHhhCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHH-hCCEEEEecCCCCCCCCE
Confidence 9999999999876 79999999999999999999999999964 699999999999876 59999999 8899
Q ss_pred EEEecc
Q 035832 237 FLVEQR 242 (245)
Q Consensus 237 i~~~~~ 242 (245)
+++++.
T Consensus 891 Iv~~Gt 896 (916)
T 3pih_A 891 IVATGT 896 (916)
T ss_dssp EEEEES
T ss_pred EEEEcC
Confidence 998764
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=100.00 E-value=1e-36 Score=298.35 Aligned_cols=210 Identities=27% Similarity=0.295 Sum_probs=154.6
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHh-CCC-------CCCcc-------------
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLA-GLS-------KPTSG------------- 74 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~-Gl~-------~p~~G------------- 74 (245)
+.|++++++. .+|+||||+|++||+++|+|+||||||||+++|+ |.+ .+..|
T Consensus 628 ~~L~v~~l~~-------~~Lk~Vsl~I~~Geiv~I~G~nGSGKSTLl~~ll~g~l~~~l~~~~~~~G~~~~i~G~~~~~~ 700 (972)
T 2r6f_A 628 RWLEVVGARE-------HNLKNVSVKIPLGTFVAVTGVSGSGKSTLVNEVLYKALAQKLHRAKAKPGEHRDIRGLEHLDK 700 (972)
T ss_dssp CEEEEEEECS-------SSCCSEEEEEESSSEEECCBCTTSSHHHHHTTTHHHHHHHHHHCCCCCCCSCSEEECGGGCSE
T ss_pred eEEEEecCcc-------cccccceEEEcCCCEEEEEcCCCCCHHHHHHHHHHHHHHHhhcCCCCCCCceeeeccccccce
Confidence 5799999852 2599999999999999999999999999999853 221 12333
Q ss_pred eEEEcCccCCCCCCCCCC--------------C-CCCCcEEEEecCCCCC--------------------C---------
Q 035832 75 SINIRGYNNDGEPNNSPE--------------P-LPPEKVGIVFQFPERY--------------------F--------- 110 (245)
Q Consensus 75 ~i~~~g~~~~~~~~~~~~--------------~-~~~~~i~~v~Q~~~~~--------------------~--------- 110 (245)
.|.+++.++...+..... . ...+.+||++|.+... |
T Consensus 701 ~I~idq~pig~~~rs~paty~~v~d~ir~lfa~~~ear~~Gy~~~~fsfn~~ggrC~~C~g~G~i~~em~fl~~v~~~ce 780 (972)
T 2r6f_A 701 VIDIDQSPIGRTPRSNPATYTGVFDDIRDVFASTNEAKVRGYKKGRFSFNVKGGRCEACHGDGIIKIEMHFLPDVYVPCE 780 (972)
T ss_dssp EEEECSSCSCSSTTCCHHHHHTHHHHHHHHHHTSHHHHHTTCCTTTTCTTSTTTBCTTTTTCSEEEECCSSSCCEEEECT
T ss_pred EEEEcCcccccCccccchhhhhHHHHHHHHhccCHHHHHhcccccccccccccccccccccccceeeehhcccccccccc
Confidence 377777776432211000 0 0012346666653210 0
Q ss_pred ----------------C--------cccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHH
Q 035832 111 ----------------V--------ADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYK 166 (245)
Q Consensus 111 ----------------~--------~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqk 166 (245)
. .+|+.|++.|.. . . .. ..+..++++.+||....+++++.+||||||
T Consensus 781 ~c~G~r~~~e~l~v~~~g~sI~dvl~ltv~e~l~~~~-~---~---~~--~~~~~~~L~~~gL~~~~l~~~~~~LSGGek 851 (972)
T 2r6f_A 781 VCHGKRYNRETLEVTYKGKNIAEVLDMTVEDALDFFA-S---I---PK--IKRKLETLYDVGLGYMKLGQPATTLSGGEA 851 (972)
T ss_dssp TTTTCCBCTTGGGCCBTTBCHHHHHTSBHHHHHHHTC-S---C---HH--HHHHHHHHHHTTCSSSBTTCCGGGCCHHHH
T ss_pred ccccccccchhhhhhccCCCHHHhhhcCHHHHHHHHh-c---c---hh--HHHHHHHHHHcCCCcccccCchhhCCHHHH
Confidence 0 235666665531 1 0 11 123467899999986346999999999999
Q ss_pred HHHHHHHHHhhCC---CEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEE------eCCe
Q 035832 167 RRLALAIQLVQVP---DLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRM------DMGG 236 (245)
Q Consensus 167 qrv~iAral~~~p---~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l------~~G~ 236 (245)
|||+||++|+.+| ++|||||||+|||+..++.++++|+++.+ +.|||+||||++++ ..||++++| ++|+
T Consensus 852 QRv~LAraL~~~p~~p~lLILDEPTsGLD~~~~~~l~~lL~~L~~~G~TVIvisHdl~~i-~~aDrIivL~p~gG~~~G~ 930 (972)
T 2r6f_A 852 QRVKLAAELHRRSNGRTLYILDEPTTGLHVDDIARLLDVLHRLVDNGDTVLVIEHNLDVI-KTADYIIDLGPEGGDRGGQ 930 (972)
T ss_dssp HHHHHHHHHSSCCCSCEEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECCCHHHH-TTCSEEEEECSSSTTSCCS
T ss_pred HHHHHHHHHhcCCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEcCCHHHH-HhCCEEEEEcCCCCCCCCE
Confidence 9999999999875 99999999999999999999999999864 68999999999987 579999999 6899
Q ss_pred EEEecc
Q 035832 237 FLVEQR 242 (245)
Q Consensus 237 i~~~~~ 242 (245)
++.++.
T Consensus 931 Iv~~g~ 936 (972)
T 2r6f_A 931 IVAVGT 936 (972)
T ss_dssp EEEEES
T ss_pred EEEecC
Confidence 987653
|
| >2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=100.00 E-value=4.3e-41 Score=310.25 Aligned_cols=192 Identities=18% Similarity=0.172 Sum_probs=154.8
Q ss_pred CcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcc-e-EEEcCccCCCCCCCCC
Q 035832 14 DYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSG-S-INIRGYNNDGEPNNSP 91 (245)
Q Consensus 14 ~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G-~-i~~~g~~~~~~~~~~~ 91 (245)
..+|++++||++.|+ ++||++++|++++|+||||||||||+|+|+|+++|++| + |+++|.
T Consensus 115 ~~~mi~~~nl~~~y~--------~vsl~i~~Ge~v~IvGpnGsGKSTLlr~L~Gl~~p~~G~~pI~vdg~---------- 176 (460)
T 2npi_A 115 NHTMKYIYNLHFMLE--------KIRMSNFEGPRVVIVGGSQTGKTSLSRTLCSYALKFNAYQPLYINLD---------- 176 (460)
T ss_dssp CCTHHHHHHHHHHHH--------HHHHHSSSCCCEEEEESTTSSHHHHHHHHHHTTHHHHCCCCEEEECC----------
T ss_pred Ccchhhhhhhhehhh--------cCceEeCCCCEEEEECCCCCCHHHHHHHHhCcccccCCceeEEEcCC----------
Confidence 356788999988873 69999999999999999999999999999999999999 9 999871
Q ss_pred CCCCCCcEEEEecCCCC--CCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHH
Q 035832 92 EPLPPEKVGIVFQFPER--YFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRL 169 (245)
Q Consensus 92 ~~~~~~~i~~v~Q~~~~--~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv 169 (245)
.++.++|+||++.. .+...|+.+|+ ++........ ...++.++++.+|+.+. .+ +.+|||||||||
T Consensus 177 ---~~~~i~~vpq~~~l~~~~~~~tv~eni-~~~~~~~~~~-----~~~~~~~ll~~~gl~~~-~~--~~~LSgGq~qrl 244 (460)
T 2npi_A 177 ---PQQPIFTVPGCISATPISDILDAQLPT-WGQSLTSGAT-----LLHNKQPMVKNFGLERI-NE--NKDLYLECISQL 244 (460)
T ss_dssp ---TTSCSSSCSSCCEEEECCSCCCTTCTT-CSCBCBSSCC-----SSCCBCCEECCCCSSSG-GG--CHHHHHHHHHHH
T ss_pred ---ccCCeeeeccchhhcccccccchhhhh-cccccccCcc-----hHHHHHHHHHHhCCCcc-cc--hhhhhHHHHHHH
Confidence 13568999998731 22346888888 6532111100 01224456778899864 34 889999999999
Q ss_pred HHHHH--HhhCCCE----EEEeC-CCCCCCHHHHHHHHHHHHHhhcCceEEEEecChh------HHHhhccE-----EEE
Q 035832 170 ALAIQ--LVQVPDL----LILDE-PLAGLDWKARADVVKLLKHLKKELTILVVSHDLK------EMAALVDH-----SWR 231 (245)
Q Consensus 170 ~iAra--l~~~p~l----lllDE-Pts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~------~~~~~~d~-----v~~ 231 (245)
+|||| |+.+|++ ||||| ||++||+. .+.+.++++++ +.|+|+||||.+ ++..+||+ |++
T Consensus 245 alAra~rL~~~p~i~~sGLlLDEpPts~LD~~-~~~l~~l~~~~--~~tviiVth~~~~~l~~~~~~~~~dr~~~~~vi~ 321 (460)
T 2npi_A 245 GQVVGQRLHLDPQVRRSGCIVDTPSISQLDEN-LAELHHIIEKL--NVNIMLVLCSETDPLWEKVKKTFGPELGNNNIFF 321 (460)
T ss_dssp HHHHHHHHHHCHHHHHSCEEEECCCGGGSCSS-CHHHHHHHHHT--TCCEEEEECCSSCTHHHHHHHHHHHHHCGGGEEE
T ss_pred HHHHHHHhccCcccCcceEEEeCCcccccChh-HHHHHHHHHHh--CCCEEEEEccCchhhhHHHHHHhcccccCCEEEE
Confidence 99999 9999999 99999 99999999 66666666654 578999999988 78899999 999
Q ss_pred Ee-CCeEE
Q 035832 232 MD-MGGFL 238 (245)
Q Consensus 232 l~-~G~i~ 238 (245)
|+ +|+++
T Consensus 322 l~k~G~iv 329 (460)
T 2npi_A 322 IPKLDGVS 329 (460)
T ss_dssp ECCCTTCC
T ss_pred EeCCCcEE
Confidence 99 99987
|
| >4aby_A DNA repair protein RECN; hydrolase, double strand break repair, ATPase, nucleotide binding domain; HET: DNA; 3.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=100.00 E-value=6.6e-36 Score=271.69 Aligned_cols=200 Identities=20% Similarity=0.233 Sum_probs=142.2
Q ss_pred ceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC--------------------------------------CCcc
Q 035832 33 DILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK--------------------------------------PTSG 74 (245)
Q Consensus 33 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--------------------------------------p~~G 74 (245)
.++++++|++++| +++|+||||||||||+++|+++.. +.+|
T Consensus 49 ~~l~~v~l~~~~G-~~~lvG~NGaGKStLl~aI~~l~~~~~~~~~i~~g~~~~~v~~~~~~~~~~~~~~l~r~~~~~~~~ 127 (415)
T 4aby_A 49 ATITQLELELGGG-FCAFTGETGAGKSIIVDALGLLLGGRANHDLIRSGEKELLVTGFWGDGDESEADSASRRLSSAGRG 127 (415)
T ss_dssp TTEEEEEEECCSS-EEEEEESHHHHHHHHTHHHHHHTTCCCCGGGBCTTCSEEEEEEEC--------CEEEEEEETTSCE
T ss_pred cceeeEEEecCCC-cEEEECCCCCCHHHHHHHHHHHhCCCccHHHhcCCCCeEEEEEEEEecCCCceEEEEEEEecCCce
Confidence 3699999999999 999999999999999999977764 4478
Q ss_pred eEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCch------------------------
Q 035832 75 SINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSI------------------------ 130 (245)
Q Consensus 75 ~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~------------------------ 130 (245)
+++++|+++..... ....+..++++||++...+. +..+...|. .......
T Consensus 128 ~i~ing~~~~~~~~---~~~~~~~i~~~~q~~~l~l~--~~~~~r~~l-d~~~~~~~~~~~~~~~~y~~~~~~~~~l~~~ 201 (415)
T 4aby_A 128 AARLSGEVVSVREL---QEWAQGRLTIHWQHSAVSLL--SPANQRGLL-DRRVTKEAQAYAAAHAAWREAVSRLERLQAS 201 (415)
T ss_dssp EEEETTEEECHHHH---HHHHTTTEEEETTTCTTTTS--SHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHHHHHC---
T ss_pred EEEECCEECCHHHH---HHHHhhceEEecCccccccc--CHHHHHHHH-HHHhccChHHHHHHHHHHHHHHHHHHHHHhh
Confidence 89999987642110 01112348999998753322 222222211 0000000
Q ss_pred ----------------------------------hHHHHHHHHHHHHHHHcCCCCcc----------------------C
Q 035832 131 ----------------------------------QLKEYLALNLQRAINWVGLDGTS----------------------L 154 (245)
Q Consensus 131 ----------------------------------~~~~~~~~~~~~~l~~~~l~~~~----------------------~ 154 (245)
.........+.+.++.+++.... .
T Consensus 202 ~~~~~~~~i~~~~~l~~~~~~l~~~~~~l~~~R~~~~~~l~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 281 (415)
T 4aby_A 202 ESSKHPTSLVPRGSVDALHAELLKVGQALDAAREREAEPLVDSLLAVIRELGMPHARMEFALSALAEPAAYGLSDVLLRF 281 (415)
T ss_dssp --------CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTCTTCEEEEEEEEEEEEETTEEEEEEEEE
T ss_pred hhhhcCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceEEEEEeeccCCCCCCCceEEEEE
Confidence 00001122344455556554200 0
Q ss_pred C-------CCCCC-CChHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHh
Q 035832 155 D-------KDPHS-LSGGYKRRLALAIQLVQVP--DLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAA 224 (245)
Q Consensus 155 ~-------~~~~~-LSgGqkqrv~iAral~~~p--~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~ 224 (245)
. +++.. ||||||||++||++|+.+| ++|||||||+|||+.++..+.+.|+++.++.|||+||||++.+ .
T Consensus 282 ~~~~~~~~~~~~~~lSgGe~qrl~lA~~l~~~~~~~~LlLDEpt~~LD~~~~~~l~~~L~~l~~~~~vi~itH~~~~~-~ 360 (415)
T 4aby_A 282 SANPGEELGPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIA-A 360 (415)
T ss_dssp ESSSSCCCCBGGGCSCHHHHHHHHHHHHHHHCCSSSEEEESSTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHHH-T
T ss_pred EcCCCCcccchhhhcCHhHHHHHHHHHHHHhCCCCCEEEEECCCCCCCHHHHHHHHHHHHHHhCCCEEEEEeCcHHHH-h
Confidence 1 22333 6999999999999999999 9999999999999999999999999998779999999999775 6
Q ss_pred hccEEEEE----eCCeEEEe
Q 035832 225 LVDHSWRM----DMGGFLVE 240 (245)
Q Consensus 225 ~~d~v~~l----~~G~i~~~ 240 (245)
+||++++| ++|+++.+
T Consensus 361 ~~d~i~~l~k~~~~G~~~~~ 380 (415)
T 4aby_A 361 RAHHHYKVEKQVEDGRTVSH 380 (415)
T ss_dssp TCSEEEEEEEEEETTEEEEE
T ss_pred hcCeEEEEEEeccCCceEEE
Confidence 89999999 99998764
|
| >3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A* | Back alignment and structure |
|---|
Probab=100.00 E-value=8.3e-33 Score=248.46 Aligned_cols=84 Identities=21% Similarity=0.419 Sum_probs=78.0
Q ss_pred CCCCCCCChHHHHHHHHHHHHh------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhcc
Q 035832 155 DKDPHSLSGGYKRRLALAIQLV------QVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVD 227 (245)
Q Consensus 155 ~~~~~~LSgGqkqrv~iAral~------~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d 227 (245)
++++.+|||||||||+|||||+ .+|++|||||||++||+.++..++++|+++.+ +.|||+||||++. ...||
T Consensus 274 ~~~~~~LSgGe~qr~~la~al~~~~~~~~~p~~lllDEpt~~LD~~~~~~~~~~l~~l~~~g~tvi~itH~~~~-~~~~d 352 (365)
T 3qf7_A 274 ERPARGLSGGERALISISLAMSLAEVASGRLDAFFIDEGFSSLDTENKEKIASVLKELERLNKVIVFITHDREF-SEAFD 352 (365)
T ss_dssp EEEGGGSCHHHHHHHHHHHHHHHHHHTTTTCCEEEEESCCTTSCHHHHHHHHHHHHGGGGSSSEEEEEESCHHH-HTTCS
T ss_pred CCCchhCCHHHHHHHHHHHHHHhhhcccCCCCEEEEeCCCccCCHHHHHHHHHHHHHHHhCCCEEEEEecchHH-HHhCC
Confidence 5688999999999999999999 69999999999999999999999999999964 6899999999998 57899
Q ss_pred EEEEEeCCeEEE
Q 035832 228 HSWRMDMGGFLV 239 (245)
Q Consensus 228 ~v~~l~~G~i~~ 239 (245)
++++|++|+++.
T Consensus 353 ~~~~l~~G~i~~ 364 (365)
T 3qf7_A 353 RKLRITGGVVVN 364 (365)
T ss_dssp CEEEEETTEEC-
T ss_pred EEEEEECCEEEe
Confidence 999999999875
|
| >4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=2.9e-33 Score=225.87 Aligned_cols=148 Identities=16% Similarity=0.185 Sum_probs=106.8
Q ss_pred eeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHH
Q 035832 37 GVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVL 116 (245)
Q Consensus 37 ~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~ 116 (245)
|+||++++||+++|+||||||||||+|++.+ |...+++.. ..|+++|++...+...+++
T Consensus 1 ~vsl~i~~gei~~l~G~nGsGKSTl~~~~~~------~~~~~~~d~---------------~~g~~~~~~~~~~~~~~~~ 59 (171)
T 4gp7_A 1 SMKLTIPELSLVVLIGSSGSGKSTFAKKHFK------PTEVISSDF---------------CRGLMSDDENDQTVTGAAF 59 (171)
T ss_dssp CEEEEEESSEEEEEECCTTSCHHHHHHHHSC------GGGEEEHHH---------------HHHHHCSSTTCGGGHHHHH
T ss_pred CccccCCCCEEEEEECCCCCCHHHHHHHHcc------CCeEEccHH---------------HHHHhcCcccchhhHHHHH
Confidence 6899999999999999999999999999653 222222111 1267788764332222222
Q ss_pred HHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH--
Q 035832 117 DEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWK-- 194 (245)
Q Consensus 117 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~-- 194 (245)
+++.. .. ......+.... .+ .....|+|||||++||||++.+|++|+|||||++||+.
T Consensus 60 ~~~~~-----------------~~-~~~~~~g~~~~-~~-~~~~~s~g~~qrv~iAral~~~p~~lllDEPt~~Ld~~~~ 119 (171)
T 4gp7_A 60 DVLHY-----------------IV-SKRLQLGKLTV-VD-ATNVQESARKPLIEMAKDYHCFPVAVVFNLPEKVCQERNK 119 (171)
T ss_dssp HHHHH-----------------HH-HHHHHTTCCEE-EE-SCCCSHHHHHHHHHHHHHTTCEEEEEEECCCHHHHHHHHH
T ss_pred HHHHH-----------------HH-HHHHhCCCeEE-EE-CCCCCHHHHHHHHHHHHHcCCcEEEEEEeCCHHHHHHHHh
Confidence 22211 11 11223455432 23 34566999999999999999999999999999999999
Q ss_pred --------------HHHHHHHHHHHhh-cCceEEEEecChhHHHhh
Q 035832 195 --------------ARADVVKLLKHLK-KELTILVVSHDLKEMAAL 225 (245)
Q Consensus 195 --------------~~~~i~~~l~~l~-~~~tiii~tHd~~~~~~~ 225 (245)
.+..+++.|++++ ++.|+|++|||++++..+
T Consensus 120 ~R~~~~~~~~vi~~~~~~l~~~l~~l~~~g~tvi~vtH~~~~~~~~ 165 (171)
T 4gp7_A 120 NRTDRQVEEYVIRKHTQQMKKSIKGLQREGFRYVYILNSPEEVEEV 165 (171)
T ss_dssp TCSSCCCCHHHHHHHHHHHHHHSTTHHHHTCSEEEEECSHHHHHHE
T ss_pred cccCCCCCHHHHHHHHHHhhhhhhhHHhcCCcEEEEeCCHHHhhhh
Confidence 6688899988875 479999999999988653
|
| >3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032} | Back alignment and structure |
|---|
Probab=99.97 E-value=8.5e-35 Score=242.37 Aligned_cols=158 Identities=17% Similarity=0.105 Sum_probs=102.7
Q ss_pred cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCC-
Q 035832 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYF- 110 (245)
Q Consensus 32 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~- 110 (245)
+.+|+++ ++||+++|+||||||||||+++|+|+ +|++|+|.. .++.. +. ...++++||+||++...+
T Consensus 13 ~~~l~~i----~~Ge~~~liG~nGsGKSTLl~~l~Gl-~p~~G~I~~--~~~~~-~~----~~~~~~ig~v~q~~~enl~ 80 (208)
T 3b85_A 13 KHYVDAI----DTNTIVFGLGPAGSGKTYLAMAKAVQ-ALQSKQVSR--IILTR-PA----VEAGEKLGFLPGTLNEKID 80 (208)
T ss_dssp HHHHHHH----HHCSEEEEECCTTSSTTHHHHHHHHH-HHHTTSCSE--EEEEE-CS----CCTTCCCCSSCC------C
T ss_pred HHHHHhc----cCCCEEEEECCCCCCHHHHHHHHhcC-CCcCCeeee--EEecC-Cc----hhhhcceEEecCCHHHHHH
Confidence 4689985 89999999999999999999999999 999999943 22211 10 123567999999861111
Q ss_pred Cc-ccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 035832 111 VA-DNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLA 189 (245)
Q Consensus 111 ~~-~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts 189 (245)
.. .++.+.+.. .. . ...+.++++. ++ ||||||+|||||+.+|++|||||||+
T Consensus 81 ~~~~~~~~~~~~----~~-~-------~~~~~~~l~~-gl--------------Gq~qrv~lAraL~~~p~lllLDEPts 133 (208)
T 3b85_A 81 PYLRPLHDALRD----MV-E-------PEVIPKLMEA-GI--------------VEVAPLAYMRGRTLNDAFVILDEAQN 133 (208)
T ss_dssp TTTHHHHHHHTT----TS-C-------TTHHHHHHHT-TS--------------EEEEEGGGGTTCCBCSEEEEECSGGG
T ss_pred HHHHHHHHHHHH----hc-c-------HHHHHHHHHh-CC--------------chHHHHHHHHHHhcCCCEEEEeCCcc
Confidence 01 011121110 00 0 1123444543 22 99999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeE
Q 035832 190 GLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGF 237 (245)
Q Consensus 190 ~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i 237 (245)
+ ++..++++|+++.+++||| +|||++++.. ...+++|..
T Consensus 134 ~----~~~~l~~~l~~l~~g~tii-vtHd~~~~~~----~~~~~~G~~ 172 (208)
T 3b85_A 134 T----TPAQMKMFLTRLGFGSKMV-VTGDITQVDL----PGGQKSGLR 172 (208)
T ss_dssp C----CHHHHHHHHTTBCTTCEEE-EEEC----------------CCH
T ss_pred c----cHHHHHHHHHHhcCCCEEE-EECCHHHHhC----cCCCCCcHH
Confidence 9 8899999999884468999 9999986543 344566643
|
| >1e69_A Chromosome segregation SMC protein; structural maintenance of chromosomes, coiled coil; 3.1A {Thermotoga maritima} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.97 E-value=5.6e-32 Score=239.01 Aligned_cols=85 Identities=26% Similarity=0.264 Sum_probs=75.3
Q ss_pred CCCCCCCCChHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEE
Q 035832 154 LDKDPHSLSGGYKRRLALAIQLV----QVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHS 229 (245)
Q Consensus 154 ~~~~~~~LSgGqkqrv~iAral~----~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v 229 (245)
.++++.+||+|||||++||+||+ .+|++|||||||++||+..++.++++|+++.++.+||++||+.+ +..+||++
T Consensus 213 ~~~~~~~lS~Gq~q~v~ia~~l~~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~tH~~~-~~~~~d~~ 291 (322)
T 1e69_A 213 RDQKLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKI-VMEAADLL 291 (322)
T ss_dssp CCCBGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTT-GGGGCSEE
T ss_pred ccCchhhCCHHHHHHHHHHHHHHHhccCCCCEEEEeCCCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHH-HHhhCceE
Confidence 46678899999999999999997 58899999999999999999999999999866789999999975 56789987
Q ss_pred --EEEeCCeEEE
Q 035832 230 --WRMDMGGFLV 239 (245)
Q Consensus 230 --~~l~~G~i~~ 239 (245)
++|.+|....
T Consensus 292 ~~v~~~~g~s~~ 303 (322)
T 1e69_A 292 HGVTMVNGVSAI 303 (322)
T ss_dssp EEEEESSSCEEE
T ss_pred EEEEEeCCEEEE
Confidence 8888886543
|
| >1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A* | Back alignment and structure |
|---|
Probab=99.97 E-value=6.2e-34 Score=258.82 Aligned_cols=169 Identities=15% Similarity=0.125 Sum_probs=138.1
Q ss_pred cceeeeeeEEEcCCC--------------------EEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCC
Q 035832 32 VDILNGVSFSLPEKS--------------------FGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSP 91 (245)
Q Consensus 32 ~~il~~vsl~i~~Ge--------------------~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 91 (245)
+.+|+++||++++|+ +++|+||||||||||+|+|+|+++|++|+|.++|.+..
T Consensus 36 ~~~l~~is~~i~~Ge~~~~~~~i~~~L~~~~~~~~~valvG~nGaGKSTLln~L~Gl~~p~~GsI~~~g~~~t------- 108 (413)
T 1tq4_A 36 QEILNLIELRMRAGNIQLTNSAISDALKEIDSSVLNVAVTGETGSGKSSFINTLRGIGNEEEGAAKTGVVEVT------- 108 (413)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHCCEEEEEEECTTSSHHHHHHHHHTCCTTSTTSCCCCC-----------
T ss_pred HHHhhhccceecCCCCcccchhhhhhhhhcccCCeEEEEECCCCCcHHHHHHHHhCCCCccCceEEECCeecc-------
Confidence 458999999999999 99999999999999999999999999999999876431
Q ss_pred CCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChH--HHHHH
Q 035832 92 EPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGG--YKRRL 169 (245)
Q Consensus 92 ~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG--qkqrv 169 (245)
+ .+++||++ .++.+|+.|+..++.. ...+.++++.+++.+. +..+. ||+| |+||+
T Consensus 109 ----~--~~~v~q~~--~~~~ltv~D~~g~~~~------------~~~~~~~L~~~~L~~~--~~~~~-lS~G~~~kqrv 165 (413)
T 1tq4_A 109 ----M--ERHPYKHP--NIPNVVFWDLPGIGST------------NFPPDTYLEKMKFYEY--DFFII-ISATRFKKNDI 165 (413)
T ss_dssp ----C--CCEEEECS--SCTTEEEEECCCGGGS------------SCCHHHHHHHTTGGGC--SEEEE-EESSCCCHHHH
T ss_pred ----e--eEEecccc--ccCCeeehHhhcccch------------HHHHHHHHHHcCCCcc--CCeEE-eCCCCccHHHH
Confidence 1 16899985 3556788887655421 1135677888888753 44444 9999 99999
Q ss_pred HHHHHHhh----------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-----c-----CceEEEEecChhH--HHhhcc
Q 035832 170 ALAIQLVQ----------VPDLLILDEPLAGLDWKARADVVKLLKHLK-----K-----ELTILVVSHDLKE--MAALVD 227 (245)
Q Consensus 170 ~iAral~~----------~p~llllDEPts~LD~~~~~~i~~~l~~l~-----~-----~~tiii~tHd~~~--~~~~~d 227 (245)
+||+||+. +|++++|||||+|||+..++++++.|+++. + ..+|+++||+++. +..+||
T Consensus 166 ~la~aL~~~~~p~~lV~tkpdlllLDEPtsgLD~~~~~~l~~~l~~l~~~~l~~~g~~~~~iiliSsh~l~~~~~e~L~d 245 (413)
T 1tq4_A 166 DIAKAISMMKKEFYFVRTKVDSDITNEADGEPQTFDKEKVLQDIRLNCVNTFRENGIAEPPIFLLSNKNVCHYDFPVLMD 245 (413)
T ss_dssp HHHHHHHHTTCEEEEEECCHHHHHHHHHTTCCTTCCHHHHHHHHHHHHHHHHHHTTCSSCCEEECCTTCTTSTTHHHHHH
T ss_pred HHHHHHHhcCCCeEEEEecCcccccCcccccCCHHHHHHHHHHHHHHHHHHHHhcCCCCCcEEEEecCcCCccCHHHHHH
Confidence 99999999 999999999999999999999999998873 1 1568899999887 888888
Q ss_pred EEE
Q 035832 228 HSW 230 (245)
Q Consensus 228 ~v~ 230 (245)
++.
T Consensus 246 ~I~ 248 (413)
T 1tq4_A 246 KLI 248 (413)
T ss_dssp HHH
T ss_pred HHH
Confidence 874
|
| >1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.96 E-value=3.5e-31 Score=215.37 Aligned_cols=141 Identities=13% Similarity=0.105 Sum_probs=103.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQ 126 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~ 126 (245)
.++|+||||||||||+++|+|++. |.++|.+..... ....++++||++|++. . .+++ ++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~-----i~~~g~~~~~~~----~~~~~~~ig~~~~~~~-~------~~~~-~~~~-- 62 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLG-----KRAIGFWTEEVR----DPETKKRTGFRIITTE-G------KKKI-FSSK-- 62 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHG-----GGEEEEEEEEEC----------CCEEEEEETT-C------CEEE-EEET--
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC-----CcCCCEEhhhhc----cccccceeEEEeecCc-H------HHHH-HHhh--
Confidence 589999999999999999999985 455554431110 0012467999999862 1 1111 1100
Q ss_pred CCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH-----HhhCCCEEEEeC--CCCCCCHHHHHHH
Q 035832 127 SGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ-----LVQVPDLLILDE--PLAGLDWKARADV 199 (245)
Q Consensus 127 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra-----l~~~p~llllDE--Pts~LD~~~~~~i 199 (245)
.. .-... .++++.+||||||||++||+| ++.+|+++|||| ||++||+..++.+
T Consensus 63 -~~------------------~~~~~-~~~~~~~lSgG~~qr~~la~aa~~~~l~~~p~llilDEigp~~~ld~~~~~~l 122 (178)
T 1ye8_A 63 -FF------------------TSKKL-VGSYGVNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMELFSKKFRDLV 122 (178)
T ss_dssp -TC------------------CCSSE-ETTEEECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGGGCHHHHHHH
T ss_pred -cC------------------Ccccc-ccccccCcCHHHHHHHHHHhhccccccccCCCEEEEeCCCCcccCCHHHHHHH
Confidence 00 00022 578899999999999999996 999999999999 9999999999999
Q ss_pred HHHHHHhhcCceEEEEe---cChhHHHhhccE
Q 035832 200 VKLLKHLKKELTILVVS---HDLKEMAALVDH 228 (245)
Q Consensus 200 ~~~l~~l~~~~tiii~t---Hd~~~~~~~~d~ 228 (245)
.+++.+ .+.|+|++| ||.+++..+|++
T Consensus 123 ~~~l~~--~~~~~i~~~H~~h~~~~~~~i~~r 152 (178)
T 1ye8_A 123 RQIMHD--PNVNVVATIPIRDVHPLVKEIRRL 152 (178)
T ss_dssp HHHHTC--TTSEEEEECCSSCCSHHHHHHHTC
T ss_pred HHHHhc--CCCeEEEEEccCCCchHHHHHHhc
Confidence 998876 356788888 599999999998
|
| >1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2.6e-33 Score=232.46 Aligned_cols=179 Identities=14% Similarity=0.082 Sum_probs=120.6
Q ss_pred cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCC
Q 035832 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFV 111 (245)
Q Consensus 32 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~ 111 (245)
.++++| .+|++||+++|+||||||||||+|+|+|+++. +.+++.. ...... ...++.++|+||++. .|.
T Consensus 9 ~~~~~~--~~i~~Gei~~l~GpnGsGKSTLl~~l~gl~~~----i~~~~~~-~~~~~~---~~~~~~i~~~~q~~~-~~~ 77 (207)
T 1znw_A 9 KPTARG--QPAAVGRVVVLSGPSAVGKSTVVRCLRERIPN----LHFSVSA-TTRAPR---PGEVDGVDYHFIDPT-RFQ 77 (207)
T ss_dssp ------------CCCEEEEECSTTSSHHHHHHHHHHHSTT----CEECCCE-ESSCCC---TTCCBTTTBEECCHH-HHH
T ss_pred CcCCCC--CCCCCCCEEEEECCCCCCHHHHHHHHHhhCCc----eEEcccc-cccCCc---ccccCCCeeEecCHH-HHH
Confidence 457888 79999999999999999999999999999963 4444322 111111 112467999999975 456
Q ss_pred cccHHHHHHhcCCC----CCCchhHHHHHHHHHHHH------HHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCE
Q 035832 112 ADNVLDEVIFGWPR----QSGSIQLKEYLALNLQRA------INWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDL 181 (245)
Q Consensus 112 ~~tv~e~l~~~~~~----~~~~~~~~~~~~~~~~~~------l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~l 181 (245)
.+++.+++...... ..... ......+++.+. ++.+|+... .++++.+|| ||+.+|++
T Consensus 78 ~~~~~~~l~~~~~~~~n~~~~g~-~~~~~~~~~~~~~~~~~~l~~~gl~~~-~~~~~~~lS-----------~l~~~p~~ 144 (207)
T 1znw_A 78 QLIDQGELLEWAEIHGGLHRSGT-LAQPVRAAAATGVPVLIEVDLAGARAI-KKTMPEAVT-----------VFLAPPSW 144 (207)
T ss_dssp HHHHTTCEEEEEEEGGGTEEEEE-EHHHHHHHHHHTCCEEEECCHHHHHHH-HHHCTTSEE-----------EEEECSCH
T ss_pred HHHhcCCceeehhhcCchhhcCC-cHHHHHHHHHcCCeEEEEeCHHHHHHH-HHhcCCcEE-----------EEEECCCH
Confidence 67777776432100 00011 122233344444 555666543 577888888 99999999
Q ss_pred EEEeCCCCCC----CHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeC
Q 035832 182 LILDEPLAGL----DWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDM 234 (245)
Q Consensus 182 lllDEPts~L----D~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~ 234 (245)
++|||||+++ |+..+++++++++++.+ +.|+|++|||++++..+||++++|..
T Consensus 145 ~~LDep~~~l~~~~d~~~~~~l~~~l~~l~~~~g~tvi~vtHdl~~~~~~~d~i~~l~~ 203 (207)
T 1znw_A 145 QDLQARLIGRGTETADVIQRRLDTARIELAAQGDFDKVVVNRRLESACAELVSLLVGTA 203 (207)
T ss_dssp HHHHHHHHTTSCSCHHHHHHHHHHHHHHHHGGGGSSEEEECSSHHHHHHHHHHHHC---
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHHHhhhccCcEEEECCCHHHHHHHHHHHHHhcc
Confidence 9999999998 78899999999999863 58999999999999999999999853
|
| >3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.95 E-value=1.4e-30 Score=228.43 Aligned_cols=181 Identities=18% Similarity=0.106 Sum_probs=137.5
Q ss_pred eeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCC-CCCCCC-CCCcEEEEecCCCCCCCc
Q 035832 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPN-NSPEPL-PPEKVGIVFQFPERYFVA 112 (245)
Q Consensus 35 l~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-~~~~~~-~~~~i~~v~Q~~~~~~~~ 112 (245)
++++||++++|++++|+||||||||||++.|+|+++|++|+|.+.|.++..... .....+ .+..++|++|++...++.
T Consensus 90 ~~~l~~~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g~d~~r~~a~~ql~~~~~~~~i~~v~q~~~~~~~~ 169 (302)
T 3b9q_A 90 KTELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAA 169 (302)
T ss_dssp CCSCCCCSSSCEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCC--CCCHH
T ss_pred ccccccccCCCcEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeecccchhHHHHHHHHHHhcCceEEEecCCccCHH
Confidence 467899999999999999999999999999999999999999999987643100 000000 023699999997414567
Q ss_pred ccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCC--EEEEeCCCCC
Q 035832 113 DNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPD--LLILDEPLAG 190 (245)
Q Consensus 113 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~--llllDEPts~ 190 (245)
.++++++.++.... . ...+++.+|+.+. .++++.+|| |||++||||++.+|+ +|+|| ||+|
T Consensus 170 ~~v~e~l~~~~~~~-~-----------d~~lldt~gl~~~-~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-ptsg 232 (302)
T 3b9q_A 170 TVLSKAVKRGKEEG-Y-----------DVVLCDTSGRLHT-NYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTG 232 (302)
T ss_dssp HHHHHHHHHHHHTT-C-----------SEEEECCCCCSSC-CHHHHHHHH---HHHHHHHTTSTTCCSEEEEEEE-GGGG
T ss_pred HHHHHHHHHHHHcC-C-----------cchHHhcCCCCcc-hhHHHHHHH---HHHHHHHHhhccCCCeeEEEEe-CCCC
Confidence 89999998752110 0 0123556788764 577888999 999999999999999 99999 9999
Q ss_pred CCHHHHHHHHHHHHHhh--cCceEEEEec---------ChhHHHhhccEEEEEeCCeEE
Q 035832 191 LDWKARADVVKLLKHLK--KELTILVVSH---------DLKEMAALVDHSWRMDMGGFL 238 (245)
Q Consensus 191 LD~~~~~~i~~~l~~l~--~~~tiii~tH---------d~~~~~~~~d~v~~l~~G~i~ 238 (245)
||+..+. +++. .+.|+|++|| .++.+...++.|.++..|+.+
T Consensus 233 lD~~~~~------~~~~~~~g~t~iiiThlD~~~~~g~~l~~~~~~~~pi~~i~~Ge~~ 285 (302)
T 3b9q_A 233 LNMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 285 (302)
T ss_dssp GGGHHHH------HHHHHHTCCCEEEEECCSSCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred cCHHHHH------HHHHHhcCCCEEEEeCCCCCCccChheehHHHHCCCEEEEeCCCCh
Confidence 9998652 3343 2689999999 556666778899999999764
|
| >2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A* | Back alignment and structure |
|---|
Probab=99.95 E-value=4e-33 Score=244.29 Aligned_cols=158 Identities=16% Similarity=0.191 Sum_probs=122.6
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
+|+++||+|.|+ .++|+++||+|++|++++|+||||||||||+++|+|++ +|+|.
T Consensus 101 ~i~~~~vs~~y~---~~vL~~vsl~i~~Ge~vaIvGpsGsGKSTLl~lL~gl~---~G~I~------------------- 155 (305)
T 2v9p_A 101 FFNYQNIELITF---INALKLWLKGIPKKNCLAFIGPPNTGKSMLCNSLIHFL---GGSVL------------------- 155 (305)
T ss_dssp HHHHTTCCHHHH---HHHHHHHHHTCTTCSEEEEECSSSSSHHHHHHHHHHHH---TCEEE-------------------
T ss_pred eEEEEEEEEEcC---hhhhccceEEecCCCEEEEECCCCCcHHHHHHHHhhhc---CceEE-------------------
Confidence 589999999995 46899999999999999999999999999999999998 79883
Q ss_pred CcEEEEecCCCCCCCcccHHH-HHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLD-EVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e-~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
+|++|++. ++..|+.+ |+.++ ... . . .+.+.++.+ +.+. ++ +..|||||||| ||||
T Consensus 156 ---~~v~q~~~--lf~~ti~~~ni~~~-~~~--~---~-----~~~~~i~~~-L~~g-ld--g~~LSgGqkQR---ARAl 212 (305)
T 2v9p_A 156 ---SFANHKSH--FWLASLADTRAALV-DDA--T---H-----ACWRYFDTY-LRNA-LD--GYPVSIDRKHK---AAVQ 212 (305)
T ss_dssp ---CGGGTTSG--GGGGGGTTCSCEEE-EEE--C---H-----HHHHHHHHT-TTGG-GG--TCCEECCCSSC---CCCE
T ss_pred ---EEecCccc--cccccHHHHhhccC-ccc--c---H-----HHHHHHHHH-hHcc-CC--ccCcCHHHHHH---HHHH
Confidence 34567663 33467776 77764 110 0 0 233445553 4443 34 78999999999 9999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+.+|+||| |++||+.+...+.. +||++..+ ..||+| +|++|+++..+
T Consensus 213 l~~p~iLl----Ts~LD~~~~~~i~~-------------ltH~~~~~-~~aD~i-vl~~G~iv~~g 259 (305)
T 2v9p_A 213 IKAPPLLV----TSNIDVQAEDRYLY-------------LHSRVQTF-RFEQPC-TDESGEQPFNI 259 (305)
T ss_dssp ECCCCEEE----EESSCSTTCGGGGG-------------GTTTEEEE-ECCCCC-CCC---CCCCC
T ss_pred hCCCCEEE----ECCCCHHHHHHHHH-------------HhCCHHHH-HhCCEE-EEeCCEEEEeC
Confidence 99999999 99999999888762 29998864 689999 99999997654
|
| >2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium} | Back alignment and structure |
|---|
Probab=99.94 E-value=7.3e-31 Score=240.74 Aligned_cols=194 Identities=15% Similarity=0.077 Sum_probs=148.6
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCc---cCCCCCCCCC-
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGY---NNDGEPNNSP- 91 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~---~~~~~~~~~~- 91 (245)
++++++++++.|+.+ ..+|+++ |+|.+|++++|+||||||||||+++|+|+.+|++|.|.++|+ ++........
T Consensus 130 ~~l~~~~v~~~~~tg-~~vld~v-l~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~~~~G~i~~~G~r~~ev~~~~~~~~~ 207 (438)
T 2dpy_A 130 NPLQRTPIEHVLDTG-VRAINAL-LTVGRGQRMGLFAGSGVGKSVLLGMMARYTRADVIVVGLIGERGREVKDFIENILG 207 (438)
T ss_dssp CTTTSCCCCSBCCCS-CHHHHHH-SCCBTTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHHTTTH
T ss_pred CceEEeccceecCCC-ceEEeee-EEecCCCEEEEECCCCCCHHHHHHHHhcccCCCeEEEEEeceecHHHHHHHHhhcc
Confidence 468999999999632 4699999 999999999999999999999999999999999999999997 4422100000
Q ss_pred CCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHH
Q 035832 92 EPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLAL 171 (245)
Q Consensus 92 ~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~i 171 (245)
...+++.++|++|+....+...++.+|+.+.. + .... ..-..... ++ .+..||+|| |||+|
T Consensus 208 ~~~l~r~i~~v~q~~~~~~~~~~v~~~~~~~a---------e-~~~~------~~~~v~~~-ld-~l~~lS~g~-qrvsl 268 (438)
T 2dpy_A 208 PDGRARSVVIAAPADVSPLLRMQGAAYATRIA---------E-DFRD------RGQHVLLI-MD-SLTRYAMAQ-REIAL 268 (438)
T ss_dssp HHHHHTEEEEEECTTSCHHHHHHHHHHHHHHH---------H-HHHT------TTCEEEEE-EE-CHHHHHHHH-HHHHH
T ss_pred ccccCceEEEEECCCCCHHHHHHHHHHHHHHH---------H-HHHh------CCCCHHHH-HH-hHHHHHHHH-HHHHH
Confidence 01124679999996444556778888887641 0 0000 00011111 22 367899999 99999
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-----Cc-----eEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 172 AIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-----EL-----TILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 172 Aral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-----~~-----tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
| +.+|++ |+|||+.....+.+++.++.+ +. ||+++|||++ ..+||++++|.+|+++.+.
T Consensus 269 A---l~~p~~------t~glD~~~~~~l~~ll~r~~~~~~~~GsiT~~~tVlv~tHdl~--~~iad~v~~l~dG~Ivl~~ 337 (438)
T 2dpy_A 269 A---IGEPPA------TKGYPPSVFAKLPALVERAGNGIHGGGSITAFYTVLTEGDDQQ--DPIADSARAILDGHIVLSR 337 (438)
T ss_dssp H---TTCCCC------SSSCCTTHHHHHHHHHTTCSCCSTTSCEEEEEEEEECSSSCSC--CHHHHHHHHHSSEEEEECH
T ss_pred H---hCCCcc------cccCCHHHHHHHHHHHHHHHhccCCCCcccceeEEEEeCCCcc--chhhceEEEEeCcEEEEeC
Confidence 9 889988 999999999999999999854 43 8999999998 6789999999999998754
|
| >1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=99.94 E-value=9.2e-32 Score=225.26 Aligned_cols=181 Identities=15% Similarity=0.088 Sum_probs=120.3
Q ss_pred ceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCc
Q 035832 33 DILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVA 112 (245)
Q Consensus 33 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~ 112 (245)
.-|+||||+|++|++++|+||||||||||+++|+|++ | |+|.+ |.++..... ....+..++|+||++. .|..
T Consensus 11 ~~l~~isl~i~~G~~~~lvGpsGsGKSTLl~~L~g~~-p--G~i~~-g~~~~~~~~---~~~~~~~i~~~~~~~~-~~~~ 82 (218)
T 1z6g_A 11 SSGLVPRGSMNNIYPLVICGPSGVGKGTLIKKLLNEF-P--NYFYF-SVSCTTRKK---REKEKEGVDYYFIDKT-IFED 82 (218)
T ss_dssp -----------CCCCEEEECSTTSSHHHHHHHHHHHS-T--TTEEE-CCCEECSCC---CSSCCBTTTBEECCHH-HHHH
T ss_pred ccccCCceecCCCCEEEEECCCCCCHHHHHHHHHhhC-C--CcEEE-eecccCCCC---CcccccCCeEEECCHH-HHHH
Confidence 4699999999999999999999999999999999999 6 99999 776543211 1112467999999874 3333
Q ss_pred ccH-HHHHHhcC-CCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHH-----HHHHhhCCCEEEEe
Q 035832 113 DNV-LDEVIFGW-PRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLAL-----AIQLVQVPDLLILD 185 (245)
Q Consensus 113 ~tv-~e~l~~~~-~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~i-----Aral~~~p~llllD 185 (245)
++. .+++.++. ....... .. ..+.++++...+. .++ .+|||||+||++| ||+|+.+|++++||
T Consensus 83 ~~~~~~~l~~~~~~~~~~g~-~~----~~i~~~l~~~~~~--il~---~~lsggq~qR~~i~~~~~~~~ll~~~~~~~Ld 152 (218)
T 1z6g_A 83 KLKNEDFLEYDNYANNFYGT-LK----SEYDKAKEQNKIC--LFE---MNINGVKQLKKSTHIKNALYIFIKPPSTDVLL 152 (218)
T ss_dssp HHHTTCEEEEEEETTEEEEE-EH----HHHHHHHHTTCEE--EEE---ECHHHHHHHTTCSSCCSCEEEEEECSCHHHHH
T ss_pred hhhccchhhhhhcccccCCC-cH----HHHHHHHhCCCcE--EEE---ecHHHHHHHHHHhcCCCcEEEEEeCcCHHHHH
Confidence 321 11221110 0000000 11 1345555554432 123 5799999999999 89999999999999
Q ss_pred CCCCCCCHHHHHHHHHHHHHhh--------cCceEEEEecChhHHHhhccEEEE
Q 035832 186 EPLAGLDWKARADVVKLLKHLK--------KELTILVVSHDLKEMAALVDHSWR 231 (245)
Q Consensus 186 EPts~LD~~~~~~i~~~l~~l~--------~~~tiii~tHd~~~~~~~~d~v~~ 231 (245)
|||+++|..+...+.+.+.++. .....|+++||++++...+++++.
T Consensus 153 e~~~~~d~~~~~~i~~~l~~~~~~~~~~h~~~~d~iiv~~~~~ea~~~~~~ii~ 206 (218)
T 1z6g_A 153 SRLLTRNTENQEQIQKRMEQLNIELHEANLLNFNLSIINDDLTLTYQQLKNYLL 206 (218)
T ss_dssp HHHHHTCCCCHHHHHHHHHHHHHHHHHHTTSCCSEEEECSSHHHHHHHHHHHHH
T ss_pred HHHHhcCCCCHHHHHHHHHHHHHHHHhhcccCCCEEEECCCHHHHHHHHHHHHH
Confidence 9999999998888888887653 236789999999998888877654
|
| >2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.94 E-value=2.6e-29 Score=224.72 Aligned_cols=180 Identities=18% Similarity=0.114 Sum_probs=137.7
Q ss_pred eeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCC-CCCCCC-CCCcEEEEecCCCCCCCcc
Q 035832 36 NGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPN-NSPEPL-PPEKVGIVFQFPERYFVAD 113 (245)
Q Consensus 36 ~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-~~~~~~-~~~~i~~v~Q~~~~~~~~~ 113 (245)
..+||++++|++++|+||||||||||++.|+|+++|++|+|.+.|.++..... .....+ .+..++|++|++...++..
T Consensus 148 ~~l~l~~~~g~vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g~D~~r~~a~eql~~~~~r~~i~~v~q~~~~~~p~~ 227 (359)
T 2og2_A 148 TELQLGFRKPAVIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAAGDTFRAAASDQLEIWAERTGCEIVVAEGDKAKAAT 227 (359)
T ss_dssp CSCCCCSSSSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEECCCCSCHHHHHHHHHHHHHHTCEEECCSSSSCCHHH
T ss_pred CCcceecCCCeEEEEEcCCCChHHHHHHHHHhhccccCCEEEEecccccccchhHHHHHHHHhcCeEEEEecccccChhh
Confidence 56899999999999999999999999999999999999999999987643100 000000 1246999999874145678
Q ss_pred cHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCC--EEEEeCCCCCC
Q 035832 114 NVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPD--LLILDEPLAGL 191 (245)
Q Consensus 114 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~--llllDEPts~L 191 (245)
++++++.++..... -..+++.+|+.+. .++++.+|| |||++||||++.+|+ +|+|| ||+||
T Consensus 228 tv~e~l~~~~~~~~------------d~~lldt~Gl~~~-~~~~~~eLS---kqr~~iaral~~~P~e~lLvLD-pttgl 290 (359)
T 2og2_A 228 VLSKAVKRGKEEGY------------DVVLCDTSGRLHT-NYSLMEELI---ACKKAVGKIVSGAPNEILLVLD-GNTGL 290 (359)
T ss_dssp HHHHHHHHHHHTTC------------SEEEEECCCCSSC-CHHHHHHHH---HHHHHHHHHSTTCCSEEEEEEE-GGGGG
T ss_pred hHHHHHHHHHhCCC------------HHHHHHhcCCChh-hhhHHHHHH---HHHHHHHHHHhcCCCceEEEEc-CCCCC
Confidence 99999987521100 0123556788764 577888999 999999999999999 99999 99999
Q ss_pred CHHHHHHHHHHHHHhh--cCceEEEEec---------ChhHHHhhccEEEEEeCCeEE
Q 035832 192 DWKARADVVKLLKHLK--KELTILVVSH---------DLKEMAALVDHSWRMDMGGFL 238 (245)
Q Consensus 192 D~~~~~~i~~~l~~l~--~~~tiii~tH---------d~~~~~~~~d~v~~l~~G~i~ 238 (245)
|+..+. +.+. .+.|+|++|| .+..+...+..|.++..|+.+
T Consensus 291 D~~~~~------~~~~~~~g~t~iiiThlD~~~~gG~~lsi~~~~~~pI~~ig~Ge~~ 342 (359)
T 2og2_A 291 NMLPQA------REFNEVVGITGLILTKLDGSARGGCVVSVVEELGIPVKFIGVGEAV 342 (359)
T ss_dssp GGHHHH------HHHHHHTCCCEEEEESCTTCSCTHHHHHHHHHHCCCEEEEECSSSG
T ss_pred CHHHHH------HHHHHhcCCeEEEEecCcccccccHHHHHHHHhCCCEEEEeCCCCh
Confidence 998653 3333 2689999999 456666778899999999764
|
| >2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A | Back alignment and structure |
|---|
Probab=99.94 E-value=1.9e-28 Score=217.22 Aligned_cols=131 Identities=18% Similarity=0.151 Sum_probs=108.6
Q ss_pred eeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcc
Q 035832 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVAD 113 (245)
Q Consensus 34 il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ 113 (245)
+++++||++++|++++|+||||||||||+++|+|+++|++|.|+++|.+.... ...++.+++++
T Consensus 160 ~l~~l~~~i~~g~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~------~~~~~~i~~~~---------- 223 (330)
T 2pt7_A 160 AISAIKDGIAIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVF------KHHKNYTQLFF---------- 223 (330)
T ss_dssp HHHHHHHHHHHTCCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCC------SSCSSEEEEEC----------
T ss_pred HHhhhhhhccCCCEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeecccc------ccchhEEEEEe----------
Confidence 78999999999999999999999999999999999999999999987542110 01123344332
Q ss_pred cHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH
Q 035832 114 NVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDW 193 (245)
Q Consensus 114 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~ 193 (245)
| |||+||++|||||..+|++|++||||+
T Consensus 224 ----------------------------------g--------------gg~~~r~~la~aL~~~p~ilildE~~~---- 251 (330)
T 2pt7_A 224 ----------------------------------G--------------GNITSADCLKSCLRMRPDRIILGELRS---- 251 (330)
T ss_dssp ----------------------------------B--------------TTBCHHHHHHHHTTSCCSEEEECCCCS----
T ss_pred ----------------------------------C--------------CChhHHHHHHHHhhhCCCEEEEcCCCh----
Confidence 0 899999999999999999999999998
Q ss_pred HHHHHHHHHHHHhhcC-ceEEEEecChhHHHhhccEEEEEeCCe
Q 035832 194 KARADVVKLLKHLKKE-LTILVVSHDLKEMAALVDHSWRMDMGG 236 (245)
Q Consensus 194 ~~~~~i~~~l~~l~~~-~tiii~tHd~~~~~~~~d~v~~l~~G~ 236 (245)
.++++.|+.+..+ .|+|++||+.+ +...|||+++|.+|.
T Consensus 252 ---~e~~~~l~~~~~g~~tvi~t~H~~~-~~~~~dri~~l~~g~ 291 (330)
T 2pt7_A 252 ---SEAYDFYNVLCSGHKGTLTTLHAGS-SEEAFIRLANMSSSN 291 (330)
T ss_dssp ---THHHHHHHHHHTTCCCEEEEEECSS-HHHHHHHHHHHHHTS
T ss_pred ---HHHHHHHHHHhcCCCEEEEEEcccH-HHHHhhhheehhcCC
Confidence 2456777777766 58999999998 678899999998775
|
| >3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.93 E-value=4.9e-29 Score=215.30 Aligned_cols=149 Identities=19% Similarity=0.134 Sum_probs=95.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQ 126 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~ 126 (245)
.++|+||||||||||+|+|+|+.+|++|+|.++|+++... ..++.++|+||++. .++.+||.||+.++....
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~~~~~G~i~~~g~~i~~~-------~~~~~i~~v~q~~~-~~~~ltv~d~~~~g~~~~ 75 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQVSRKASSWNREEKIPKT-------VEIKAIGHVIEEGG-VKMKLTVIDTPGFGDQIN 75 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHC------------CCCC-------CSCCEEEESCC-----CCEEEEECCCC--CCSB
T ss_pred EEEEECCCCCCHHHHHHHHhCCCCCCCCccccCCcccCcc-------eeeeeeEEEeecCC-CcCCceEEechhhhhhcc
Confidence 3789999999999999999999999999999999876321 23568999999974 667889999998874221
Q ss_pred CCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHh
Q 035832 127 SGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHL 206 (245)
Q Consensus 127 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l 206 (245)
.. . ... .+.+.+. ... .+..+.+||||||||+++|||++. ++++|||+++||+.. .++++.+
T Consensus 76 ~~-~-~~~----~i~~~~~----~~~-~~~~~~~LS~G~~qrv~iaRal~~---lllldep~~gL~~lD----~~~l~~L 137 (270)
T 3sop_A 76 NE-N-CWE----PIEKYIN----EQY-EKFLKEEVNIARKKRIPDTRVHCC---LYFISPTGHSLRPLD----LEFMKHL 137 (270)
T ss_dssp CT-T-CSH----HHHHHHH----HHH-HHHHHHHSCTTCCSSCCCCSCCEE---EEEECCCSSSCCHHH----HHHHHHH
T ss_pred cH-H-HHH----HHHHHHH----HHH-HhhhHHhcCcccchhhhhheeeee---eEEEecCCCcCCHHH----HHHHHHH
Confidence 11 0 001 1222222 122 355677899999999999999886 999999999999987 3445555
Q ss_pred hcCceEEEEecChhH
Q 035832 207 KKELTILVVSHDLKE 221 (245)
Q Consensus 207 ~~~~tiii~tHd~~~ 221 (245)
.+..+||++.|..+.
T Consensus 138 ~~~~~vI~Vi~K~D~ 152 (270)
T 3sop_A 138 SKVVNIIPVIAKADT 152 (270)
T ss_dssp HTTSEEEEEETTGGG
T ss_pred HhcCcEEEEEecccc
Confidence 444788888887653
|
| >3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4.9e-30 Score=225.85 Aligned_cols=176 Identities=17% Similarity=0.069 Sum_probs=128.4
Q ss_pred eEEEEeEEEECCCCccceeeeeeEE-----------------------EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCc
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFS-----------------------LPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTS 73 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~-----------------------i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~ 73 (245)
+|+++||++.|. +++++++|. +++|+++||+||||||||||+++|+|+++|+.
T Consensus 43 ~i~~~~v~~~y~----p~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~ivgI~G~sGsGKSTL~~~L~gll~~~~ 118 (312)
T 3aez_A 43 QIDLLEVEEVYL----PLARLIHLQVAARQRLFAATAEFLGEPQQNPDRPVPFIIGVAGSVAVGKSTTARVLQALLARWD 118 (312)
T ss_dssp CCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHTTCCCCCSSSCCCEEEEEECCTTSCHHHHHHHHHHHHHTST
T ss_pred eEEeeehhhhhh----hHHHHHHHHHhhhhHHHHHHHHhhcccccccCCCCCEEEEEECCCCchHHHHHHHHHhhccccC
Confidence 589999999993 567777764 89999999999999999999999999999865
Q ss_pred ceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCcc
Q 035832 74 GSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTS 153 (245)
Q Consensus 74 G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~ 153 (245)
|. .++++|+|++. +++. |+.+|+.+.... ... .....+.+.++++.++ ...
T Consensus 119 G~---------------------~~v~~v~qd~~-~~~~-t~~e~~~~~~~~--g~~--~~~d~~~~~~~L~~l~-~~~- 169 (312)
T 3aez_A 119 HH---------------------PRVDLVTTDGF-LYPN-AELQRRNLMHRK--GFP--ESYNRRALMRFVTSVK-SGS- 169 (312)
T ss_dssp TC---------------------CCEEEEEGGGG-BCCH-HHHHHTTCTTCT--TSG--GGBCHHHHHHHHHHHH-TTC-
T ss_pred CC---------------------CeEEEEecCcc-CCcc-cHHHHHHHHHhc--CCC--hHHHHHHHHHHHHHhC-CCc-
Confidence 42 35899999974 4555 999998653111 111 1111234567777777 443
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-ceEEEEecChhHH-HhhccEEEE
Q 035832 154 LDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKE-LTILVVSHDLKEM-AALVDHSWR 231 (245)
Q Consensus 154 ~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~tiii~tHd~~~~-~~~~d~v~~ 231 (245)
.+.++.+|||||+||+++|+|++.+|+|||+|||++.+|+.. ..+.+- -..|+++|+.+.. ..+++|.+.
T Consensus 170 ~~~~~~~lS~G~~qRv~~a~al~~~p~ilIlDep~~~~d~~~--------~~l~~~~D~~I~V~a~~~~~~~R~i~R~~~ 241 (312)
T 3aez_A 170 DYACAPVYSHLHYDIIPGAEQVVRHPDILILEGLNVLQTGPT--------LMVSDLFDFSLYVDARIEDIEQWYVSRFLA 241 (312)
T ss_dssp SCEEEEEEETTTTEEEEEEEEEECSCSEEEEECTTTTCCCSS--------CCGGGGCSEEEEEEECHHHHHHHHHHHHHH
T ss_pred ccCCcccCChhhhhhhhhHHHhccCCCEEEECCccccCCcch--------HHHHHhcCcEEEEECCHHHHHHHHHHHHHH
Confidence 467788999999999999999999999999999999998621 112221 2468888887653 233455443
Q ss_pred Ee
Q 035832 232 MD 233 (245)
Q Consensus 232 l~ 233 (245)
+.
T Consensus 242 ~r 243 (312)
T 3aez_A 242 MR 243 (312)
T ss_dssp HT
T ss_pred HH
Confidence 33
|
| >2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B* | Back alignment and structure |
|---|
Probab=99.93 E-value=3.8e-27 Score=234.61 Aligned_cols=168 Identities=18% Similarity=0.115 Sum_probs=124.1
Q ss_pred CcceEEEEe-----EEEECCCCccceeeeeeEEEcC-------CCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCc
Q 035832 14 DYSCLEVRD-----VSYRPPGTQVDILNGVSFSLPE-------KSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGY 81 (245)
Q Consensus 14 ~~~~l~~~~-----l~~~y~~~~~~il~~vsl~i~~-------Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~ 81 (245)
+.++|+++| |++.|.++ ..+++|++|++++ |++++|+||||||||||||++ |++.+-
T Consensus 747 ~~~~l~i~~~rHP~l~~~~~~~-~~v~ndi~l~~~~~~~~~~~g~i~~ItGpNgsGKSTlLr~i-Gl~~~~--------- 815 (1022)
T 2o8b_B 747 TPPFLELKGSRHPCITKTFFGD-DFIPNDILIGCEEEEQENGKAYCVLVTGPNMGGKSTLMRQA-GLLAVM--------- 815 (1022)
T ss_dssp SCCCEEEEEECCCC------CC-CCCCEEEEESCCCSCC---CCCEEEEECCTTSSHHHHHHHH-HHHHHH---------
T ss_pred CCceEEEEeccccEEEEEecCC-ceEeeeeeeccccccccCCCCcEEEEECCCCCChHHHHHHH-HHHHHH---------
Confidence 345799999 99998432 4699999999987 999999999999999999999 998640
Q ss_pred cCCCCCCCCCCCCCCCcEE-EEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCC
Q 035832 82 NNDGEPNNSPEPLPPEKVG-IVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHS 160 (245)
Q Consensus 82 ~~~~~~~~~~~~~~~~~i~-~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~ 160 (245)
.++| ||||++. .+++.+++... +|+.+. ..+..++
T Consensus 816 ---------------aqiG~~Vpq~~~----~l~v~d~I~~r------------------------ig~~d~-~~~~~st 851 (1022)
T 2o8b_B 816 ---------------AQMGCYVPAEVC----RLTPIDRVFTR------------------------LGASDR-IMSGEST 851 (1022)
T ss_dssp ---------------HTTTCCEESSEE----EECCCSBEEEE------------------------CC----------CH
T ss_pred ---------------hheeEEeccCcC----CCCHHHHHHHH------------------------cCCHHH-Hhhchhh
Confidence 1345 9999752 34555544221 122221 2334567
Q ss_pred CChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHH-HHHHHHHHHhh-c-CceEEEEecChhHHHhhccEEEEEeCCeE
Q 035832 161 LSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKAR-ADVVKLLKHLK-K-ELTILVVSHDLKEMAALVDHSWRMDMGGF 237 (245)
Q Consensus 161 LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~-~~i~~~l~~l~-~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i 237 (245)
+|+++++ +++|++++.+|+++||||||+|+|+... ..++.+|+.+. + ++++|++||+++++..+||++.++. |++
T Consensus 852 f~~em~~-~a~al~la~~~sLlLLDEp~~Gtd~~dg~~~~~~il~~L~~~~g~~vl~~TH~~el~~~~~d~~~v~~-g~~ 929 (1022)
T 2o8b_B 852 FFVELSE-TASILMHATAHSLVLVDELGRGTATFDGTAIANAVVKELAETIKCRTLFSTHYHSLVEDYSQNVAVRL-GHM 929 (1022)
T ss_dssp HHHHHHH-HHHHHHHCCTTCEEEEECTTTTSCHHHHHHHHHHHHHHHHHTSCCEEEEECCCHHHHHHTSSCSSEEE-EEE
T ss_pred hHHHHHH-HHHHHHhCCCCcEEEEECCCCCCChHHHHHHHHHHHHHHHhcCCCEEEEEeCCHHHHHHhCCcceeec-CeE
Confidence 8888775 9999999999999999999999999875 55788998886 3 6899999999999999999988874 777
Q ss_pred E
Q 035832 238 L 238 (245)
Q Consensus 238 ~ 238 (245)
.
T Consensus 930 ~ 930 (1022)
T 2o8b_B 930 A 930 (1022)
T ss_dssp E
T ss_pred E
Confidence 6
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.93 E-value=4e-30 Score=241.01 Aligned_cols=182 Identities=13% Similarity=0.104 Sum_probs=125.0
Q ss_pred cceEEEEeEEEECCCCccceeeeeeE-EEcCCCEEEEECCCCCcHHHHHHH--HhCCCCCCcceEEEcCccCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSF-SLPEKSFGLIFGRSGSGKTTLLQL--LAGLSKPTSGSINIRGYNNDGEPNNSP 91 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl-~i~~Ge~~~liG~nGsGKSTLl~~--l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 91 (245)
..+++.+++.+...+ .++|+++|| .|++|++++|+||||||||||+++ ++|+++|++|.|+++|++....
T Consensus 10 ~~~~~~~~~~~~~~g--~~~Ld~i~~G~i~~Ge~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~~~~~~----- 82 (525)
T 1tf7_A 10 NNNSEHQAIAKMRTM--IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFEETPQD----- 82 (525)
T ss_dssp ----CCSSCCEECCC--CTTHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSCHHH-----
T ss_pred CCCccccccccccCC--chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEeCCHHH-----
Confidence 345667777654433 579999999 999999999999999999999999 7899999999999998763110
Q ss_pred CCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHH
Q 035832 92 EPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLAL 171 (245)
Q Consensus 92 ~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~i 171 (245)
....++.+||+||++... +++.+....... ...++++.+++.+. +++.+.+||+|
T Consensus 83 ~~~~~~~~g~~~q~~~~~-------~~l~~~~~~~~~----------~~~~~l~~~~l~~~-~~~~~~~LS~g------- 137 (525)
T 1tf7_A 83 IIKNARSFGWDLAKLVDE-------GKLFILDASPDP----------EGQEVVGGFDLSAL-IERINYAIQKY------- 137 (525)
T ss_dssp HHHHHGGGTCCHHHHHHT-------TSEEEEECCCCS----------SCCSCCSSHHHHHH-HHHHHHHHHHH-------
T ss_pred HHHHHHHcCCChHHhhcc-------CcEEEEecCccc----------chhhhhcccCHHHH-HHHHHHHHHHc-------
Confidence 001235689999986311 011110000000 00011122222221 23444455555
Q ss_pred HHHHhhCCCEEEEeCCCC-----CCCHHHHHHHHHHHHHhhc-CceEEEEecChhHH---------HhhccEEEEEeC
Q 035832 172 AIQLVQVPDLLILDEPLA-----GLDWKARADVVKLLKHLKK-ELTILVVSHDLKEM---------AALVDHSWRMDM 234 (245)
Q Consensus 172 Aral~~~p~llllDEPts-----~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~---------~~~~d~v~~l~~ 234 (245)
+|+++++||||+ +||+..++.++++++.+++ ++|||++||+++++ ..+||+|++|++
T Consensus 138 ------~~~~lilDe~t~~~~~~~lD~~~~~~l~~ll~~l~~~g~tvl~itH~~~~~~~~~~~~i~~~laD~vi~L~~ 209 (525)
T 1tf7_A 138 ------RARRVSIDSVTSVFQQYDASSVVRRELFRLVARLKQIGATTVMTTERIEEYGPIARYGVEEFVSDNVVILRN 209 (525)
T ss_dssp ------TCSEEEEECSTTTSTTTCCHHHHHHHHHHHHHHHHHHTCEEEEEEECSSSSSCSSTTSCHHHHCSEEEEEEE
T ss_pred ------CCCEEEECCHHHHHHhcCCHHHHHHHHHHHHHHHHHCCCEEEEEecCCCCccccccccceeeeeeEEEEEEE
Confidence 588999999998 4699999999999999964 79999999999984 556999999998
|
| >2o5v_A DNA replication and repair protein RECF; ABC ATPase, walker A motif, P-loop, signature motif, replication/recombination complex; HET: DNA; 1.61A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.92 E-value=2.2e-25 Score=199.43 Aligned_cols=82 Identities=23% Similarity=0.198 Sum_probs=73.7
Q ss_pred CCCCC-CCChHHHHHHHHHHHHh---------hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHh
Q 035832 155 DKDPH-SLSGGYKRRLALAIQLV---------QVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAA 224 (245)
Q Consensus 155 ~~~~~-~LSgGqkqrv~iAral~---------~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~ 224 (245)
++++. .||||||||++||++|+ .+|++|||||||++||+..+..+++.|.++. .|+|++||. +.
T Consensus 259 ~~~~~~~lS~Gqqq~l~lA~~La~~~l~~~~~~~p~iLLLDEp~s~LD~~~~~~l~~~l~~~~--qt~i~~th~-~~--- 332 (359)
T 2o5v_A 259 DFPASDYASRGEGRTVALALRRAELELLREKFGEDPVLLLDDFTAELDPHRRQYLLDLAASVP--QAIVTGTEL-AP--- 332 (359)
T ss_dssp TEEHHHHCCHHHHHHHHHHHHHHHHHHHHHHHSSCCEEEECCGGGCCCHHHHHHHHHHHHHSS--EEEEEESSC-CT---
T ss_pred CcchhhhCCHHHHHHHHHHHHHHHhhhhhhccCCCCEEEEeCccccCCHHHHHHHHHHHHhcC--cEEEEEEec-cc---
Confidence 44666 79999999999999999 8999999999999999999999999998875 699999994 43
Q ss_pred hccEEEEEeCCeEEEecc
Q 035832 225 LVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 225 ~~d~v~~l~~G~i~~~~~ 242 (245)
.||++++|++|+++..+.
T Consensus 333 ~~~~i~~l~~G~i~~~g~ 350 (359)
T 2o5v_A 333 GAALTLRAQAGRFTPVAD 350 (359)
T ss_dssp TCSEEEEEETTEEEECCC
T ss_pred cCCEEEEEECCEEEecCC
Confidence 899999999999987653
|
| >2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-28 Score=219.78 Aligned_cols=194 Identities=17% Similarity=0.139 Sum_probs=138.1
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCC---CCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGE---PNNSPE 92 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~---~~~~~~ 92 (245)
++++++++++.|+.+ ..+++++ |+|.+||+++|+||||||||||+++|+|+.+|+.|.|.+.|++.... ......
T Consensus 44 ~~i~~~~l~~~~~tg-~~ald~l-l~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~~~~g~i~~~G~~~~ev~~~i~~~~~ 121 (347)
T 2obl_A 44 DPLLRQVIDQPFILG-VRAIDGL-LTCGIGQRIGIFAGSGVGKSTLLGMICNGASADIIVLALIGERGREVNEFLALLPQ 121 (347)
T ss_dssp CSTTCCCCCSEECCS-CHHHHHH-SCEETTCEEEEEECTTSSHHHHHHHHHHHSCCSEEEEEEESCCHHHHHHHHTTSCH
T ss_pred CCeeecccceecCCC-CEEEEee-eeecCCCEEEEECCCCCCHHHHHHHHhcCCCCCEEEEEEecccHHHHHHHHHhhhh
Confidence 468999999999632 4699999 99999999999999999999999999999999999999988641100 000000
Q ss_pred CCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHH
Q 035832 93 PLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALA 172 (245)
Q Consensus 93 ~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iA 172 (245)
....+.+.+++|.... ..+.+... .....+.+.+...+-.-..+-+.+..||+|| ||+++|
T Consensus 122 ~~~~~~v~~~~~~~~~------~~~r~~~~------------~~~~~~ae~~~~~~~~vl~~ld~~~~lS~g~-r~v~la 182 (347)
T 2obl_A 122 STLSKCVLVVTTSDRP------ALERMKAA------------FTATTIAEYFRDQGKNVLLMMDSVTRYARAA-RDVGLA 182 (347)
T ss_dssp HHHTTEEEEEECTTSC------HHHHHHHH------------HHHHHHHHHHHTTTCEEEEEEETHHHHHHHH-HHHHHH
T ss_pred hhhhceEEEEECCCCC------HHHHHHHH------------HHHHHHHHHHHhccccHHHHHhhHHHHHHHH-HHHHHH
Confidence 0123457888876421 11111110 0000111111111111000114688999999 999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh--c-Cc-----eEEEEecChhHHHhhccEEEEEeCCeEEEec
Q 035832 173 IQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLK--K-EL-----TILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 173 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~--~-~~-----tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~ 241 (245)
+.+|++ |+||||.....+.++++++. + +. ||+++|||++ ..+||++++|.+|+++.+.
T Consensus 183 ---l~~p~~------t~Gldp~~~~~l~~ller~~~~~~GsiT~~~tVl~~thdl~--~~i~d~v~~i~dG~Ivl~~ 248 (347)
T 2obl_A 183 ---SGEPDV------RGGFPPSVFSSLPKLLERAGPAPKGSITAIYTVLLESDNVN--DPIGDEVRSILDGHIVLTR 248 (347)
T ss_dssp ---TTCCCC------BTTBCHHHHHHHHHHHTTCEECSSSEEEEEEEEECCSSCCC--CHHHHHHHHHCSEEEEBCH
T ss_pred ---cCCCCc------ccCCCHHHHHHHHHHHHHHhCCCCCCeeeEEEEEEeCCCCC--ChhhhheEEeeCcEEEEeC
Confidence 688887 99999999999999999985 3 45 8999999998 6789999999999998764
|
| >3qkt_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATP binding, DNA bindi MRE11, replication; HET: DNA ANP; 1.90A {Pyrococcus furiosus} PDB: 3qku_A* 1ii8_A 3qks_B* 3qkr_B* 1ii8_B | Back alignment and structure |
|---|
Probab=99.92 E-value=1.2e-25 Score=199.76 Aligned_cols=78 Identities=33% Similarity=0.494 Sum_probs=70.4
Q ss_pred CCCCCCCChHHHH------HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhcc
Q 035832 155 DKDPHSLSGGYKR------RLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVD 227 (245)
Q Consensus 155 ~~~~~~LSgGqkq------rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d 227 (245)
++++.+||||||| |+++|+||+.+|++|||||||++||+..+..++++|+++.+ +.|||++|||.+ +...||
T Consensus 243 ~~~~~~lS~G~~~~~~la~~l~~a~~l~~~p~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~vi~~sH~~~-~~~~~d 321 (339)
T 3qkt_A 243 ERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAAD 321 (339)
T ss_dssp EECGGGSCHHHHHHHHHHHHHHHHHHTTTTTCEEEEECCCTTCCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGCS
T ss_pred cCChHHCCHHHHHHHHHHHHHHHHHHhcCCCCEEEEECCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEEChHH-HHHhCC
Confidence 5788999999999 67788888899999999999999999999999999999854 589999999965 578999
Q ss_pred EEEEEe
Q 035832 228 HSWRMD 233 (245)
Q Consensus 228 ~v~~l~ 233 (245)
++++|+
T Consensus 322 ~~~~l~ 327 (339)
T 3qkt_A 322 HVIRIS 327 (339)
T ss_dssp EEEEEE
T ss_pred EEEEEE
Confidence 999986
|
| >4ad8_A DNA repair protein RECN; DNA binding protein, ATPase domain; HET: DNA; 4.00A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=99.92 E-value=1.1e-25 Score=210.61 Aligned_cols=79 Identities=27% Similarity=0.319 Sum_probs=73.0
Q ss_pred CCCCCC-ChHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEE
Q 035832 156 KDPHSL-SGGYKRRLALAIQLVQVP--DLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRM 232 (245)
Q Consensus 156 ~~~~~L-SgGqkqrv~iAral~~~p--~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l 232 (245)
+++.+| ||||||||+||+||+.+| ++|||||||+|||+.++..+.++|+++.++.|||+|||+++.+. +||++++|
T Consensus 392 ~~~~~l~SgG~~qrv~la~~l~~~~~~~~lilDEp~~gld~~~~~~i~~~l~~~~~~~~vi~itH~~~~~~-~~d~~~~~ 470 (517)
T 4ad8_A 392 GPLSDVASGGELSRVMLAVSTVLGADTPSVVFDEVDAGIGGAAAIAVAEQLSRLADTRQVLVVTHLAQIAA-RAHHHYKV 470 (517)
T ss_dssp CBSSSSSCSSHHHHHHHHHHHHHCCCSSEEEECSCSSSCCTHHHHHHHHHHHHHHHHSEEEEECCCHHHHH-HSSEEEEE
T ss_pred ccHHhcCCHHHHHHHHHHHHHHhCCCCCEEEEeCCcCCCCHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEE
Confidence 456778 999999999999999999 99999999999999999999999999977789999999999765 79999999
Q ss_pred eCC
Q 035832 233 DMG 235 (245)
Q Consensus 233 ~~G 235 (245)
+++
T Consensus 471 ~~~ 473 (517)
T 4ad8_A 471 EKQ 473 (517)
T ss_dssp ECC
T ss_pred ecc
Confidence 654
|
| >1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=9.3e-27 Score=202.63 Aligned_cols=182 Identities=14% Similarity=0.059 Sum_probs=121.5
Q ss_pred ceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcc-eEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCC
Q 035832 33 DILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSG-SINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFV 111 (245)
Q Consensus 33 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~ 111 (245)
++|+++++.+++|++++|+||||||||||++.|+|...|++| .|.+.+.+.. . ...++++.++++...
T Consensus 23 ~~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e~~---~----~~~~~r~~~~~~~~~---- 91 (296)
T 1cr0_A 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLEES---V----EETAEDLIGLHNRVR---- 91 (296)
T ss_dssp TTHHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESSSC---H----HHHHHHHHHHHTTCC----
T ss_pred HHHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCcCC---H----HHHHHHHHHHHcCCC----
Confidence 579999999999999999999999999999999999999888 7766443221 0 011223333443321
Q ss_pred cccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHH-HHHHHHHHHHhhCCCEEEEeCCCC-
Q 035832 112 ADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGY-KRRLALAIQLVQVPDLLILDEPLA- 189 (245)
Q Consensus 112 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq-kqrv~iAral~~~p~llllDEPts- 189 (245)
.+..+++..+. .......+.+.++++..++. ....+..+|.+| +||+. |+++..+|+++|+||||+
T Consensus 92 -~~~~~~l~~~~-------~~~~~~~~~~~~~l~~~~l~---i~~~~~~~~~~~l~~~~~-a~~~~~~p~llilDept~~ 159 (296)
T 1cr0_A 92 -LRQSDSLKREI-------IENGKFDQWFDELFGNDTFH---LYDSFAEAETDRLLAKLA-YMRSGLGCDVIILDHISIV 159 (296)
T ss_dssp -GGGCHHHHHHH-------HHHTHHHHHHHHHHSSSCEE---EECCCCSCCHHHHHHHHH-HHHHTTCCSEEEEEEEC--
T ss_pred -hhhccccccCC-------CCHHHHHHHHHHHhccCCEE---EECCCCCCCHHHHHHHHH-HHHHhcCCCEEEEcCcccc
Confidence 11222332210 00111122333444333331 244457899999 67776 999999999999999999
Q ss_pred --C---CCH-HHHHHHHHHHHHhhc--CceEEEEecCh--h--------------------HHHhhccEEEEEeCCeE
Q 035832 190 --G---LDW-KARADVVKLLKHLKK--ELTILVVSHDL--K--------------------EMAALVDHSWRMDMGGF 237 (245)
Q Consensus 190 --~---LD~-~~~~~i~~~l~~l~~--~~tiii~tHd~--~--------------------~~~~~~d~v~~l~~G~i 237 (245)
+ +|+ ....++.+.|+++++ ++|||++||+. + .+..+||+|++|++|+.
T Consensus 160 ~~~~~~~d~~~~~~~i~~~L~~la~~~~~~vi~vsh~~r~~~~~~~~~~~~p~l~dl~~s~~i~~~aD~vi~L~~~~~ 237 (296)
T 1cr0_A 160 VSASGESDERKMIDNLMTKLKGFAKSTGVVLVVICHLKNPDKGKAHEEGRPVSITDLRGSGALRQLSDTIIALERNQQ 237 (296)
T ss_dssp ---------CHHHHHHHHHHHHHHHHHCCEEEEEEECC-----------------CCC---CHHHHCSEEEEEEEC--
T ss_pred CCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEEecCccccccccccCCCCCHHHhcccHHhHhhCcEEEEEecCcc
Confidence 5 565 677889999998853 68999999995 5 67889999999998864
|
| >1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A* | Back alignment and structure |
|---|
Probab=99.92 E-value=1.8e-25 Score=209.39 Aligned_cols=153 Identities=16% Similarity=0.142 Sum_probs=122.2
Q ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHH
Q 035832 39 SFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDE 118 (245)
Q Consensus 39 sl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~ 118 (245)
+..|.+|++++|+||||||||||+++++|+.+|. |+ +-+.|++|++. ..+..+
T Consensus 275 ~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~-G~---------------------~vi~~~~ee~~-----~~l~~~ 327 (525)
T 1tf7_A 275 GGGFFKDSIILATGATGTGKTLLVSRFVENACAN-KE---------------------RAILFAYEESR-----AQLLRN 327 (525)
T ss_dssp TSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTT-TC---------------------CEEEEESSSCH-----HHHHHH
T ss_pred CCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhC-CC---------------------CEEEEEEeCCH-----HHHHHH
Confidence 4589999999999999999999999999998774 42 12456677652 233343
Q ss_pred HH-hcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHH---
Q 035832 119 VI-FGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWK--- 194 (245)
Q Consensus 119 l~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~--- 194 (245)
.. +++ . ..+ +...|+... .+.++.+|||||+||+++|+++..+|++||+| ||++||+.
T Consensus 328 ~~~~g~-------~--------~~~-~~~~g~~~~-~~~~p~~LS~g~~q~~~~a~~l~~~p~llilD-p~~~Ld~~~~~ 389 (525)
T 1tf7_A 328 AYSWGM-------D--------FEE-MERQNLLKI-VCAYPESAGLEDHLQIIKSEINDFKPARIAID-SLSALARGVSN 389 (525)
T ss_dssp HHTTSC-------C--------HHH-HHHTTSEEE-CCCCGGGSCHHHHHHHHHHHHHTTCCSEEEEE-CHHHHTSSSCH
T ss_pred HHHcCC-------C--------HHH-HHhCCCEEE-EEeccccCCHHHHHHHHHHHHHhhCCCEEEEc-ChHHHHhhCCh
Confidence 32 111 0 011 223566554 58889999999999999999999999999999 99999999
Q ss_pred --HHHHHHHHHHHhhc-CceEEEEecCh----------hHHHhhccEEEEEeCCe
Q 035832 195 --ARADVVKLLKHLKK-ELTILVVSHDL----------KEMAALVDHSWRMDMGG 236 (245)
Q Consensus 195 --~~~~i~~~l~~l~~-~~tiii~tHd~----------~~~~~~~d~v~~l~~G~ 236 (245)
.++.+.++++.+++ +.|+|++||+. +.+..+||+|++|++|+
T Consensus 390 ~~~~~~i~~ll~~l~~~g~tvilvsh~~~~~~~~~~~~~~l~~~~D~vi~L~~ge 444 (525)
T 1tf7_A 390 NAFRQFVIGVTGYAKQEEITGLFTNTSDQFMGAHSITDSHISTITDTIILLQYVE 444 (525)
T ss_dssp HHHHHHHHHHHHHHHHTTCEEEEEEECSSSSCCCSSCSSCCTTTCSEEEEEEEEE
T ss_pred HHHHHHHHHHHHHHHhCCCEEEEEECcccccCcccccCcccceeeeEEEEEEEEE
Confidence 99999999999875 69999999998 77888999999999876
|
| >3pih_A Uvrabc system protein A; hydrolase, ABC ATPase, DNA repair, nucleotide excision repai hydrolase-DNA complex; HET: DNA; 2.90A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=99.91 E-value=5.6e-25 Score=216.22 Aligned_cols=157 Identities=25% Similarity=0.299 Sum_probs=120.1
Q ss_pred HHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCC--C--Cc-h-hHH
Q 035832 60 TLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQ--S--GS-I-QLK 133 (245)
Q Consensus 60 TLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~--~--~~-~-~~~ 133 (245)
|...|..+.++|.+++|+++|+++.. +..+++.+++.+..... . .. . ...
T Consensus 383 ~C~~C~g~rl~~~~~~V~i~G~~i~~------------------------~~~~~v~~~l~~~~~~~l~~~~~~~~~~~~ 438 (916)
T 3pih_A 383 TCSVCGGRRLNREALSVKINGLNIHE------------------------FTELSISEELEFLKNLNLTEREREIVGELL 438 (916)
T ss_dssp ECTTTCSCCBCTTGGGEEETTEEHHH------------------------HHHSBHHHHHHHHHSCCCCTTTTTTHHHHH
T ss_pred cchhcccccCChHhcCcEECCccHHH------------------------hhhCCHHHHHHHHHhccCcHHHHHHHHhhH
Confidence 44566777888999999998876521 23456666665421100 0 00 0 011
Q ss_pred HHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCC--EEEEeCCCCCCCHHHHHHHHHHHHHhhc-Cc
Q 035832 134 EYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPD--LLILDEPLAGLDWKARADVVKLLKHLKK-EL 210 (245)
Q Consensus 134 ~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~--llllDEPts~LD~~~~~~i~~~l~~l~~-~~ 210 (245)
++. ....+.+..+||....+++++.+|||||||||+|||||+.+|+ +|||||||+|||+...+.++++|+++++ +.
T Consensus 439 ~~~-~~~~~~L~~vgL~~l~l~r~~~~LSGGe~QRv~LAraL~~~p~~~lllLDEPT~gLD~~~~~~l~~~L~~L~~~G~ 517 (916)
T 3pih_A 439 KEI-EKRLEFLVDVGLEYLTLSRSATTLSGGESQRIRLATQIGSGLTGVIYVLDEPTIGLHPRDTERLIKTLKKLRDLGN 517 (916)
T ss_dssp HHH-HHHHHHHHTTTCTTCBTTSBGGGCCHHHHHHHHHHHHHHTTCCSCEEEEECTTTTCCGGGHHHHHHHHHHTTTTTC
T ss_pred HHH-HHHHHHHHHcCCccccccCCcccCCHHHHHHHHHHHHHhhCCCCcEEEEECCccCCCHHHHHHHHHHHHHHHhcCC
Confidence 111 2345678889998654689999999999999999999999887 9999999999999999999999999975 68
Q ss_pred eEEEEecChhHHHhhccEEEEE------eCCeEEEecc
Q 035832 211 TILVVSHDLKEMAALVDHSWRM------DMGGFLVEQR 242 (245)
Q Consensus 211 tiii~tHd~~~~~~~~d~v~~l------~~G~i~~~~~ 242 (245)
|||+||||++.+. .||++++| ++|++++++.
T Consensus 518 TvivVtHd~~~~~-~aD~ii~lgpgag~~~G~iv~~G~ 554 (916)
T 3pih_A 518 TVIVVEHDEEVIR-NADHIIDIGPGGGTNGGRVVFQGT 554 (916)
T ss_dssp EEEEECCCHHHHH-TCSEEEEEESSSGGGCSEEEEEEC
T ss_pred EEEEEeCCHHHHH-hCCEEEEEcCCcccCCCEEEEeec
Confidence 9999999999876 59999999 8899988654
|
| >2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.90 E-value=3.2e-25 Score=190.53 Aligned_cols=141 Identities=20% Similarity=0.141 Sum_probs=104.1
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-cceEEEcCccCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPT-SGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
+++++++++. ++|+++| +++|++++|+||||||||||+++|+|+++|+ +|+|.++|.++....
T Consensus 5 ~~~l~~l~~~------~vl~~i~--i~~g~~v~i~Gp~GsGKSTll~~l~g~~~~~~~G~I~~~g~~i~~~~-------- 68 (261)
T 2eyu_A 5 IPEFKKLGLP------DKVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEYVF-------- 68 (261)
T ss_dssp -CCGGGSSCC------THHHHGG--GCSSEEEEEECSTTCSHHHHHHHHHHHHHHHCCCEEEEEESSCCSCC--------
T ss_pred CCChHHCCCH------HHHHHHh--hCCCCEEEEECCCCccHHHHHHHHHHhCCCCCCCEEEEcCCcceeec--------
Confidence 3556666532 4799999 8999999999999999999999999999998 999999886542110
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
+..+++++|. .+|++. ..| |++||+||
T Consensus 69 ~~~~~~v~q~----------------------------------------~~gl~~-------~~l------~~~la~aL 95 (261)
T 2eyu_A 69 KHKKSIVNQR----------------------------------------EVGEDT-------KSF------ADALRAAL 95 (261)
T ss_dssp CCSSSEEEEE----------------------------------------EBTTTB-------SCH------HHHHHHHH
T ss_pred CCcceeeeHH----------------------------------------HhCCCH-------HHH------HHHHHHHH
Confidence 1111222221 123321 122 89999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEe
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMD 233 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~ 233 (245)
..+|++|++|||| |+.+...++ +....+.+|+++||+.+ +...|||++.|.
T Consensus 96 ~~~p~illlDEp~---D~~~~~~~l---~~~~~g~~vl~t~H~~~-~~~~~dri~~l~ 146 (261)
T 2eyu_A 96 REDPDVIFVGEMR---DLETVETAL---RAAETGHLVFGTLHTNT-AIDTIHRIVDIF 146 (261)
T ss_dssp HHCCSEEEESCCC---SHHHHHHHH---HHHHTTCEEEEEECCSS-HHHHHHHHHHTS
T ss_pred hhCCCEEEeCCCC---CHHHHHHHH---HHHccCCEEEEEeCcch-HHHHHHHHhhhc
Confidence 9999999999999 998876544 33445789999999987 567889887664
|
| >2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A* | Back alignment and structure |
|---|
Probab=99.90 E-value=4.2e-26 Score=193.66 Aligned_cols=165 Identities=12% Similarity=0.048 Sum_probs=104.9
Q ss_pred ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCC
Q 035832 31 QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYF 110 (245)
Q Consensus 31 ~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~ 110 (245)
.+++|+|+||++++|+++||+||||||||||+++|+|++ |.+.++ ..++.++|++|+. ++
T Consensus 11 ~~~~l~~isl~i~~g~iigI~G~~GsGKSTl~k~L~~~l----G~~~~~--------------~~~~~i~~v~~d~--~~ 70 (245)
T 2jeo_A 11 VDLGTENLYFQSMRPFLIGVSGGTASGKSTVCEKIMELL----GQNEVE--------------QRQRKVVILSQDR--FY 70 (245)
T ss_dssp ------------CCSEEEEEECSTTSSHHHHHHHHHHHH----TGGGSC--------------GGGCSEEEEEGGG--GB
T ss_pred CceeecceeccCCCCEEEEEECCCCCCHHHHHHHHHHHh----chhccc--------------ccCCceEEEeCCc--Cc
Confidence 357999999999999999999999999999999999976 555443 0245799999985 55
Q ss_pred CcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 035832 111 VADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAG 190 (245)
Q Consensus 111 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~ 190 (245)
..+|+.+++.+......... ........+.+.++.+ .+. .+.++..||+||+||+++ ++++.+|+++|+|||...
T Consensus 71 ~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~~l--~~~-~~~~~~~ls~g~~~r~~~-~~~~~~~~~lilDg~~~~ 145 (245)
T 2jeo_A 71 KVLTAEQKAKALKGQYNFDH-PDAFDNDLMHRTLKNI--VEG-KTVEVPTYDFVTHSRLPE-TTVVYPADVVLFEGILVF 145 (245)
T ss_dssp CCCCHHHHHHHHTTCCCTTS-GGGBCHHHHHHHHHHH--HTT-CCEEECCEETTTTEECSS-CEEECCCSEEEEECTTTT
T ss_pred cccCHhHhhhhhccCCCCCC-cccccHHHHHHHHHHH--HCC-CCeecccccccccCccCc-eEEecCCCEEEEeCcccc
Confidence 66799998876422111000 0011112233444433 222 466788999999999988 688999999999999988
Q ss_pred CCHHHHHHHHHHHHHhhcCceEEEEecChhHH-HhhccEE
Q 035832 191 LDWKARADVVKLLKHLKKELTILVVSHDLKEM-AALVDHS 229 (245)
Q Consensus 191 LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~-~~~~d~v 229 (245)
.|.. +.++ .+.+|+++||+...+ ..+++++
T Consensus 146 ~~~~--------l~~~-~~~~i~v~th~~~~~~r~~~r~~ 176 (245)
T 2jeo_A 146 YSQE--------IRDM-FHLRLFVDTDSDVRLSRRVLRDV 176 (245)
T ss_dssp TSHH--------HHTT-CSEEEEEECCHHHHHHHHHHHHT
T ss_pred ccHH--------HHHh-cCeEEEEECCHHHHHHHHHHHHH
Confidence 8764 1222 267999999974334 4444433
|
| >2r6f_A Excinuclease ABC subunit A; UVRA, nucleotide excision repair, DNA repair, ABC ATPase, at cassette, DNA damage, DNA excision; HET: ADP; 3.20A {Geobacillus stearothermophilus} PDB: 3uwx_A | Back alignment and structure |
|---|
Probab=99.90 E-value=1.2e-23 Score=206.21 Aligned_cols=130 Identities=26% Similarity=0.318 Sum_probs=105.6
Q ss_pred CCcccHHHHHHhcCCCCCCchh-------HHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCC--C
Q 035832 110 FVADNVLDEVIFGWPRQSGSIQ-------LKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVP--D 180 (245)
Q Consensus 110 ~~~~tv~e~l~~~~~~~~~~~~-------~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p--~ 180 (245)
+..+||.|++.|. ........ ..++...++ +++..+||....+++++.+|||||||||+||++|+.+| +
T Consensus 449 ~~~ltV~e~~~f~-e~l~l~~~~~~i~~~~~~ei~~Rl-~~L~~vGL~~l~ldR~~~tLSGGEkQRV~LA~aL~~~~~~~ 526 (972)
T 2r6f_A 449 VTAMSVTEALAFF-DGLELTEKEAQIARLILREIRDRL-GFLQNVGLDYLTLSRSAGTLSGGEAQRIRLATQIGSRLTGV 526 (972)
T ss_dssp HHTSBHHHHHHHH-HHCCCCHHHHHHSHHHHHHHHHHH-HHHHHHTCTTSBSSSBGGGCCHHHHHHHHHHHHHTTCCCSC
T ss_pred HhhCCHHHHHHHH-HhcCCCHHHHHHHHHHHHHHHHHH-HHhhhCCCCccccCCccccCCHHHHHHHHHHHHHhhCCCCC
Confidence 4568999999984 21111110 012334444 46889999864469999999999999999999999985 9
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEE------eCCeEEEecc
Q 035832 181 LLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRM------DMGGFLVEQR 242 (245)
Q Consensus 181 llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l------~~G~i~~~~~ 242 (245)
+|||||||++||+...+.++++|+++++ +.|||+|+||++++. .||+|++| ++|++++++.
T Consensus 527 llILDEPTagLdp~~~~~L~~~L~~Lr~~G~TVIvVeHdl~~i~-~ADrIi~LgpgaG~~gG~iv~~G~ 594 (972)
T 2r6f_A 527 LYVLDEPSIGLHQRDNDRLIATLKSMRDLGNTLIVVEHDEDTML-AADYLIDIGPGAGIHGGEVVAAGT 594 (972)
T ss_dssp EEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEEECCCHHHHH-SCSEEEEECSSSGGGCCSEEEEEC
T ss_pred EEEEeCcccCCCHHHHHHHHHHHHHHHhCCCEEEEEecCHHHHH-hCCEEEEeCCCccCCCCEEEEecC
Confidence 9999999999999999999999999975 689999999999875 79999999 7899988764
|
| >1f2t_B RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_B* 1us8_B* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.3e-23 Score=163.44 Aligned_cols=83 Identities=33% Similarity=0.454 Sum_probs=74.5
Q ss_pred CCCCCCCCChHHHHHHHHH------HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhc
Q 035832 154 LDKDPHSLSGGYKRRLALA------IQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALV 226 (245)
Q Consensus 154 ~~~~~~~LSgGqkqrv~iA------ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~ 226 (245)
.++++.+||||||||++|| |||+.+|+++||||||+|||+.++..+.+.|.++.+ +.|||++|||++ +..+|
T Consensus 51 ~~~~~~~LSgGe~qrv~lA~~Lalaral~~~p~lllLDEPt~~LD~~~~~~l~~~l~~~~~~~~tiiivsH~~~-~~~~~ 129 (148)
T 1f2t_B 51 KERPLTFLSGGERIALGLAFRLAMSLYLAGEISLLILDEPTPYLDEERRRKLITIMERYLKKIPQVILVSHDEE-LKDAA 129 (148)
T ss_dssp EEECGGGSCHHHHHHHHHHHHHHHHHHHHSSCSEEEEESCSCTTCHHHHHHHHHHHHHTGGGSSEEEEEESCGG-GGGGC
T ss_pred ccCChhHCCHHHHHHHHHHhhhHHHHHHcCCCCEEEEECCCccCCHHHHHHHHHHHHHHHccCCEEEEEEChHH-HHHhC
Confidence 3678999999999999876 899999999999999999999999999999999864 689999999995 67899
Q ss_pred cEEEEE--eCCeE
Q 035832 227 DHSWRM--DMGGF 237 (245)
Q Consensus 227 d~v~~l--~~G~i 237 (245)
|++++| ++|..
T Consensus 130 d~ii~l~~~~g~s 142 (148)
T 1f2t_B 130 DHVIRISLENGSS 142 (148)
T ss_dssp SEEEEEEEETTEE
T ss_pred CEEEEEEcCCCeE
Confidence 999999 45644
|
| >3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A* | Back alignment and structure |
|---|
Probab=99.89 E-value=3.6e-24 Score=211.22 Aligned_cols=162 Identities=19% Similarity=0.115 Sum_probs=114.3
Q ss_pred cceEEEEeEEEECCC---CccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHH--------hCCCCCCcceEEEcCccC
Q 035832 15 YSCLEVRDVSYRPPG---TQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLL--------AGLSKPTSGSINIRGYNN 83 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~---~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l--------~Gl~~p~~G~i~~~g~~~ 83 (245)
...|.+++...-+-. +...+++|++|++++|++++|+||||||||||||++ .|...|.++..
T Consensus 629 ~~~i~i~~~rHP~le~~~~~~~v~ndisl~~~~g~i~~ItGpNGsGKSTlLr~ial~~~~aq~G~~vpa~~~~------- 701 (934)
T 3thx_A 629 QGRIILKASRHACVEVQDEIAFIPNDVYFEKDKQMFHIITGPNMGGKSTYIRQTGVIVLMAQIGCFVPCESAE------- 701 (934)
T ss_dssp SCEEEEEEECCTTTTTC--CCCCCEEEEEETTTBCEEEEECCTTSSHHHHHHHHHHHHHHHHHTCCBSEEEEE-------
T ss_pred CcceEeecCccchhhhcCCceeecccceeecCCCeEEEEECCCCCCHHHHHHHHHHHHHHHhcCCcccccccc-------
Confidence 345778776543311 124689999999999999999999999999999999 55444432211
Q ss_pred CCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCCh
Q 035832 84 DGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSG 163 (245)
Q Consensus 84 ~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg 163 (245)
++++. .. +..+|+. +.....+|+
T Consensus 702 ---------------~~~~d----~i----------------------------------~~~ig~~----d~l~~~lSt 724 (934)
T 3thx_A 702 ---------------VSIVD----CI----------------------------------LARVGAG----DSQLKGVST 724 (934)
T ss_dssp ---------------EECCS----EE----------------------------------EEECC-------------CH
T ss_pred ---------------chHHH----HH----------------------------------HHhcCch----hhHHHhHhh
Confidence 11000 00 0111221 112345788
Q ss_pred HHHHHHHHHHHH--hhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEE
Q 035832 164 GYKRRLALAIQL--VQVPDLLILDEPLAGLDWKARADV-VKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFL 238 (245)
Q Consensus 164 Gqkqrv~iAral--~~~p~llllDEPts~LD~~~~~~i-~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~ 238 (245)
|++++..+|+++ +.+|+++||||||+|+|+.....+ +.+++.+.+ ++++|++||+.+. ..+||++..+.+|++.
T Consensus 725 f~~e~~~~a~il~~a~~~sLlLLDEp~~GlD~~~~~~i~~~il~~l~~~~g~~vl~aTH~~el-~~lad~~~~v~ng~v~ 803 (934)
T 3thx_A 725 FMAEMLETASILRSATKDSLIIIDELGRGTSTYDGFGLAWAISEYIATKIGAFCMFATHFHEL-TALANQIPTVNNLHVT 803 (934)
T ss_dssp HHHHHHHHHHHHHHCCTTCEEEEESCSCSSCHHHHHHHHHHHHHHHHHTTCCEEEEEESCGGG-GGGGGTCTTEEEEEEE
T ss_pred hHHHHHHHHHHHHhccCCcEEEEeCCCCCCCHHHHHHHHHHHHHHHHhcCCCEEEEEcCcHHH-HHHhcccceeEeeEEE
Confidence 888888888888 999999999999999999998888 677777753 6899999999765 5799999999999987
Q ss_pred Eec
Q 035832 239 VEQ 241 (245)
Q Consensus 239 ~~~ 241 (245)
..+
T Consensus 804 ~~~ 806 (934)
T 3thx_A 804 ALT 806 (934)
T ss_dssp EEE
T ss_pred EEe
Confidence 643
|
| >1w1w_A Structural maintenance of chromosome 1; cohesin, chromosome segregation, cell adhesion, kleisin, MIT cell cycle; HET: ATG; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.88 E-value=3.2e-22 Score=182.89 Aligned_cols=77 Identities=27% Similarity=0.300 Sum_probs=68.9
Q ss_pred CCCCCCChHHHHHHHHHHHHh----hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEE
Q 035832 156 KDPHSLSGGYKRRLALAIQLV----QVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSW 230 (245)
Q Consensus 156 ~~~~~LSgGqkqrv~iAral~----~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~ 230 (245)
+++..||||||||++||++|+ .+|+++||||||++||+..+..+.++|+++.. +.++|++||+... ...||+++
T Consensus 329 ~~~~~lS~Gq~~~~~la~~la~~~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~~~ii~th~~~~-~~~~d~~~ 407 (430)
T 1w1w_A 329 KDMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTM-FEKSDALV 407 (430)
T ss_dssp CCGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHH-HTTCSEEE
T ss_pred cccccCCcchHHHHHHHHHHHHhcCCCCCEEEeCCCcccCCHHHHHHHHHHHHHHhcCCCEEEEEECCHHH-HHhCCEEE
Confidence 345569999999999999999 58999999999999999999999999999864 5899999999765 56899999
Q ss_pred EEe
Q 035832 231 RMD 233 (245)
Q Consensus 231 ~l~ 233 (245)
.|.
T Consensus 408 ~~~ 410 (430)
T 1w1w_A 408 GVY 410 (430)
T ss_dssp EEE
T ss_pred EEE
Confidence 986
|
| >1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=1.1e-23 Score=204.36 Aligned_cols=148 Identities=21% Similarity=0.192 Sum_probs=108.4
Q ss_pred ceEEEEeEEEECCC-CccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-CCcceEEEcCccCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPG-TQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK-PTSGSINIRGYNNDGEPNNSPEP 93 (245)
Q Consensus 16 ~~l~~~~l~~~y~~-~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-p~~G~i~~~g~~~~~~~~~~~~~ 93 (245)
..|.+++...-.-. +...+++|+||+ |++++|+||||||||||+|+|+|+.. ++.|.+. +
T Consensus 549 ~~i~i~~~rHP~le~~~~~vl~disl~---g~i~~I~GpNGsGKSTlLr~iagl~~~~~~G~~v---------p------ 610 (765)
T 1ewq_A 549 DRLQIRAGRHPVVERRTEFVPNDLEMA---HELVLITGPNMAGKSTFLRQTALIALLAQVGSFV---------P------ 610 (765)
T ss_dssp SSEEEEEECCTTGGGTSCCCCEEEEES---SCEEEEESCSSSSHHHHHHHHHHHHHHHTTTCCB---------S------
T ss_pred CcEEEEEeECceEccCCceEeeeccCC---CcEEEEECCCCCChHHHHHHHHhhhhhcccCcee---------e------
Confidence 34777777322200 224689999999 99999999999999999999999874 6777642 0
Q ss_pred CCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 94 ~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
..+..+++++| .|..+++.+|+. ..+|+|++|++.+|+
T Consensus 611 a~~~~i~~v~~----i~~~~~~~d~l~--------------------------------------~g~S~~~~e~~~la~ 648 (765)
T 1ewq_A 611 AEEAHLPLFDG----IYTRIGASDDLA--------------------------------------GGKSTFMVEMEEVAL 648 (765)
T ss_dssp SSEEEECCCSE----EEEECCC--------------------------------------------CCSHHHHHHHHHHH
T ss_pred hhccceeeHHH----hhccCCHHHHHH--------------------------------------hcccHHHHHHHHHHH
Confidence 01245777665 222333333221 136899999999999
Q ss_pred HH--hhCCCEEEEeCC---CCCCCHHHH-HHHHHHHHHhhcCceEEEEecChhHHHhhc
Q 035832 174 QL--VQVPDLLILDEP---LAGLDWKAR-ADVVKLLKHLKKELTILVVSHDLKEMAALV 226 (245)
Q Consensus 174 al--~~~p~llllDEP---ts~LD~~~~-~~i~~~l~~l~~~~tiii~tHd~~~~~~~~ 226 (245)
++ +.+|+++||||| |++||+.+. ..+++.|.+ .+.++|++||+.+++ .+|
T Consensus 649 il~~a~~p~LlLLDEpgrGTs~lD~~~~~~~i~~~L~~--~g~~vl~~TH~~~l~-~~~ 704 (765)
T 1ewq_A 649 ILKEATENSLVLLDEVGRGTSSLDGVAIATAVAEALHE--RRAYTLFATHYFELT-ALG 704 (765)
T ss_dssp HHHHCCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHH--HTCEEEEECCCHHHH-TCC
T ss_pred HHHhccCCCEEEEECCCCCCCCcCHHHHHHHHHHHHHh--CCCEEEEEeCCHHHH-Hhh
Confidence 99 999999999999 999999886 578888876 578999999998875 354
|
| >4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A* | Back alignment and structure |
|---|
Probab=99.88 E-value=9.3e-24 Score=175.87 Aligned_cols=148 Identities=21% Similarity=0.202 Sum_probs=97.8
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-------CcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcc
Q 035832 41 SLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP-------TSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVAD 113 (245)
Q Consensus 41 ~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-------~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ 113 (245)
-|++|++++|+||||||||||+++|+|+..+ ..|.+++++.+. ...+++++++|... + ...
T Consensus 21 gi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~~----------~~~~~i~~~~~~~~-~-~~~ 88 (231)
T 4a74_A 21 GIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENT----------FRPERIREIAQNRG-L-DPD 88 (231)
T ss_dssp SEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSC----------CCHHHHHHHHHHTT-S-CHH
T ss_pred CCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCCC----------CCHHHHHHHHHHcC-C-CHH
Confidence 6899999999999999999999999996555 344777765431 11245777788753 2 334
Q ss_pred cHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH-------hhCCCEEEEeC
Q 035832 114 NVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL-------VQVPDLLILDE 186 (245)
Q Consensus 114 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral-------~~~p~llllDE 186 (245)
++.+|+.+.... . . ..+++.+..++++ ..+|+++++||
T Consensus 89 ~~~~~~~~~~~~--~-~--------------------------------~~~~~~~~~~~~~~~~~~~~~~~~~llilDe 133 (231)
T 4a74_A 89 EVLKHIYVARAF--N-S--------------------------------NHQMLLVQQAEDKIKELLNTDRPVKLLIVDS 133 (231)
T ss_dssp HHHHTEEEEECC--S-H--------------------------------HHHHHHHHHHHHHHHHHTTSSSCEEEEEEET
T ss_pred HHhhcEEEEecC--C-h--------------------------------HHHHHHHHHHHHHHHHhcccCCceeEEEECC
Confidence 777776653111 0 0 0011112222222 35899999999
Q ss_pred CCCCCCHH-------H-----HHHHHHHHHHhh-c-CceEEEEecChh----HHHhhccEEEEEeCC
Q 035832 187 PLAGLDWK-------A-----RADVVKLLKHLK-K-ELTILVVSHDLK----EMAALVDHSWRMDMG 235 (245)
Q Consensus 187 Pts~LD~~-------~-----~~~i~~~l~~l~-~-~~tiii~tHd~~----~~~~~~d~v~~l~~G 235 (245)
||+++|+. . ..++++.|.++. + ++|||++||+.+ .+..+||++++|++|
T Consensus 134 ~~~~l~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~g~tvi~vtH~~~~~g~~~~~~~d~~l~l~~~ 200 (231)
T 4a74_A 134 LTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQANGGHILAHSATLRVYLRKG 200 (231)
T ss_dssp SSHHHHHHSCSTTHHHHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC---------CCSEEEEEEEC
T ss_pred hHHHhccccCCCcchhHHHHHHHHHHHHHHHHHHHCCCeEEEEeecccCcchhhHhhceEEEEEEec
Confidence 99999984 2 236777777764 3 689999999554 488999999999875
|
| >3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B* | Back alignment and structure |
|---|
Probab=99.87 E-value=3.5e-23 Score=203.71 Aligned_cols=156 Identities=17% Similarity=0.161 Sum_probs=104.3
Q ss_pred eEEEEeEEEEC-----CCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-cceEEEcCccCCCCCCCC
Q 035832 17 CLEVRDVSYRP-----PGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPT-SGSINIRGYNNDGEPNNS 90 (245)
Q Consensus 17 ~l~~~~l~~~y-----~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~~ 90 (245)
.|.+++...-. +.+...+++|+||++++|++++|+||||||||||||+++++.... .|.. + +
T Consensus 640 ~i~i~~~rHP~le~~~~~~~~~V~ndvsl~~~~g~i~~ItGPNGaGKSTlLr~i~~i~~~aq~g~~------v---p--- 707 (918)
T 3thx_B 640 KIVIKNGRHPVIDVLLGEQDQYVPNNTDLSEDSERVMIITGPNMGGKSSYIKQVALITIMAQIGSY------V---P--- 707 (918)
T ss_dssp EEEEEEECCHHHHHHTCSCSSSCCEEEEECTTSCCEEEEESCCCHHHHHHHHHHHHHHHHHHHTCC------B---S---
T ss_pred cEEEEeccchhhhhhhccCCceecccccccCCCCeEEEEECCCCCchHHHHHHHHHHHHHhhcCcc------c---c---
Confidence 57777754321 112356899999999999999999999999999999998653211 1100 0 0
Q ss_pred CCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHH
Q 035832 91 PEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLA 170 (245)
Q Consensus 91 ~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~ 170 (245)
.....++++.+ . +..+|+.+. ..+...++|+||+|++.
T Consensus 708 ---a~~~~i~~~d~----i----------------------------------~~~ig~~d~-l~~~~stfs~em~~~~~ 745 (918)
T 3thx_B 708 ---AEEATIGIVDG----I----------------------------------FTRMGAADN-IYKGRSTFMEELTDTAE 745 (918)
T ss_dssp ---SSEEEEECCSE----E----------------------------------EEEC-----------CCHHHHHHHHHH
T ss_pred ---chhhhhhHHHH----H----------------------------------HHhCChHHH-HHHhHHHhhHHHHHHHH
Confidence 00011111100 0 111222222 34556789999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHH-HHHHHhh--cCceEEEEecChhHHHhhccE
Q 035832 171 LAIQLVQVPDLLILDEPLAGLDWKARADVV-KLLKHLK--KELTILVVSHDLKEMAALVDH 228 (245)
Q Consensus 171 iAral~~~p~llllDEPts~LD~~~~~~i~-~~l~~l~--~~~tiii~tHd~~~~~~~~d~ 228 (245)
|+++ +.+|+++||||||+|||+.....+. .+++.+. .++|+|++||+++.+ .+||+
T Consensus 746 il~~-a~~p~LlLLDEP~~GlD~~~~~~i~~~il~~L~~~~g~tvl~vTH~~el~-~l~~~ 804 (918)
T 3thx_B 746 IIRK-ATSQSLVILDELGRGTSTHDGIAIAYATLEYFIRDVKSLTLFVTHYPPVC-ELEKN 804 (918)
T ss_dssp HHHH-CCTTCEEEEESTTTTSCHHHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG-GHHHH
T ss_pred HHHh-ccCCCEEEEeCCCCCCCHHHHHHHHHHHHHHHHHhcCCeEEEEeCcHHHH-HHHhh
Confidence 9999 8999999999999999999999887 7777774 368999999998765 56654
|
| >3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B | Back alignment and structure |
|---|
Probab=99.87 E-value=9.2e-25 Score=207.81 Aligned_cols=188 Identities=19% Similarity=0.201 Sum_probs=112.5
Q ss_pred ceEEEEeEEEECCCCccceeeee----------eEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-CcceEEEcCccCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGV----------SFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP-TSGSINIRGYNND 84 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~v----------sl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~ 84 (245)
+.+.++|+++.|+...+++++.+ +|+++. ++|+||||||||||+++|+|+..| ++|.|+++|.++.
T Consensus 9 ~~i~~~~l~~~~~~~~r~ll~~id~l~~~gv~~~l~lp~---iaIvG~nGsGKSTLL~~I~Gl~~P~~sG~vt~~g~~i~ 85 (608)
T 3szr_A 9 GSVAENNLCSQYEEKVRPCIDLIDSLRALGVEQDLALPA---IAVIGDQSSGKSSVLEALSGVALPRGSGIVTRCPLVLK 85 (608)
T ss_dssp -----------CHHHHHHHHHHHHHHHHHSCCSSCCCCC---EECCCCTTSCHHHHHHHHHSCC-------CCCSCEEEE
T ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHHhCCCCCcccCCe---EEEECCCCChHHHHHHHHhCCCCCCCCCeEEEcCEEEE
Confidence 36899999999964333455544 366654 999999999999999999999988 7999999998853
Q ss_pred CCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChH
Q 035832 85 GEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGG 164 (245)
Q Consensus 85 ~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG 164 (245)
..... ....+++++||+||++. +++..+|.+|+.++. . .+ +.... .+|
T Consensus 86 ~~~~~-~~~~~~~~i~~v~Q~~~-l~~~~tv~e~i~~~~----------~--------~~---~~~~~-------~~s-- 133 (608)
T 3szr_A 86 LKKLV-NEDKWRGKVSYQDYEIE-ISDASEVEKEINKAQ----------N--------AI---AGEGM-------GIS-- 133 (608)
T ss_dssp EEECS-SSSCCEEEESCC---CC-CCCHHHHHTTHHHHH----------H--------HH---HCSSS-------CCC--
T ss_pred EecCC-ccccceeEEeeeccccc-CCCHHHHHHHHHHHH----------H--------Hh---cCCcc-------ccc--
Confidence 21111 11234678999999985 667789998887631 0 00 01000 011
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCC------CCCCCHHHHHHHHHHHHHh-hc--CceEEEEecChhHHH--------hh--
Q 035832 165 YKRRLALAIQLVQVPDLLILDEP------LAGLDWKARADVVKLLKHL-KK--ELTILVVSHDLKEMA--------AL-- 225 (245)
Q Consensus 165 qkqrv~iAral~~~p~llllDEP------ts~LD~~~~~~i~~~l~~l-~~--~~tiii~tHd~~~~~--------~~-- 225 (245)
++++.++.+....|+++|+||| |+|||+..+..+.++++++ .+ ..+++++|||++.+. .+
T Consensus 134 -~~~i~l~i~~~~~p~LlLlDePGi~~~~t~~LD~~~~~~i~~li~~~l~~~~~iil~vvt~~~d~a~~~~l~la~~v~~ 212 (608)
T 3szr_A 134 -HELITLEISSRDVPDLTLIDLPGITRVAVGNQPADIGYKIKTLIKKYIQRQETISLVVVPSNVDIATTEALSMAQEVDP 212 (608)
T ss_dssp -SCCEEEEEEESSSCCEEEEECCC------CCSSCSHHHHHHHHHHHHTTSSSCCEEEEEESSSCTTTCHHHHHHHHHCS
T ss_pred -hHHHHHHhcCCCCCceeEeeCCCccccccCCCCHHHHHHHHHHHHHHHhcCCCCceEEEeccchhccHHHHHHHHHHhh
Confidence 1223334444568999999999 9999999999999999996 33 378999999987332 11
Q ss_pred --ccEEEEEeCCeEEE
Q 035832 226 --VDHSWRMDMGGFLV 239 (245)
Q Consensus 226 --~d~v~~l~~G~i~~ 239 (245)
+..++++.++.++.
T Consensus 213 ~g~rtI~VlTK~Dlv~ 228 (608)
T 3szr_A 213 EGDRTIGILTKPDLVD 228 (608)
T ss_dssp SCCSEEEEEECGGGSS
T ss_pred cCCceEEEecchhhcC
Confidence 24577777765553
|
| >2qnr_A Septin-2, protein NEDD5; structural genomics consortium, SGC, mitosis, GDP, C cycle, cell division, GTP-binding, nucleotide-binding; HET: GDP; 2.60A {Homo sapiens} PDB: 2qa5_A* 3ftq_A* | Back alignment and structure |
|---|
Probab=99.87 E-value=2.5e-25 Score=194.89 Aligned_cols=163 Identities=15% Similarity=0.165 Sum_probs=85.2
Q ss_pred EeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCC-CCCCcceEEEcCccCCCCCCCCCCCCCCCcE
Q 035832 21 RDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGL-SKPTSGSINIRGYNNDGEPNNSPEPLPPEKV 99 (245)
Q Consensus 21 ~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl-~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i 99 (245)
+||+++|++ +.++++++|+| +|+||||||||||++.|+|. ..|++| +.++|.++... ...+.+
T Consensus 2 ~~l~~~~~~--~~~l~~~~~~I------~lvG~nG~GKSTLl~~L~g~~~~~~~g-i~~~g~~~~~t-------~~~~~~ 65 (301)
T 2qnr_A 2 SNLPNQVHR--KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERV-ISGAAEKIERT-------VQIEAS 65 (301)
T ss_dssp ------------------CEEE------EEEEETTSSHHHHHHHHHC--------------------------------C
T ss_pred CCCcceECC--EEEEcCCCEEE------EEECCCCCCHHHHHHHHhCCCccCCCC-cccCCcccCCc-------ceEeeE
Confidence 578999964 57999999998 99999999999999999998 889999 88887665321 113458
Q ss_pred EEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCC
Q 035832 100 GIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVP 179 (245)
Q Consensus 100 ~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p 179 (245)
++++|... ....++++|+..++.... . ..........+. +. .++++.++|||||||+.+|||++
T Consensus 66 ~~~~q~~~-~~~~ltv~Dt~g~~~~~~--~---~e~~~~l~~~l~------~~-~~~~~~~~sgg~rqrv~~ara~~--- 129 (301)
T 2qnr_A 66 TVEIEERG-VKLRLTVVDTPGYGDAIN--C---RDCFKTIISYID------EQ-FERYLHDESGLNRRHIIDNRVHC--- 129 (301)
T ss_dssp EEEEC----CCEEEEEEEEC----------------CTTHHHHHH------HH-HHHHHHHHTSSCCTTCCCCCCCE---
T ss_pred EEEecCCC-cccCcchhhhhhhhhhcC--c---HHHHHHHHHHHH------HH-HHHHHHHhCHHhhhhhhhhhhhh---
Confidence 99999864 445678887776642110 0 000000011111 11 35677899999999999999986
Q ss_pred CEEEEeCCCCC-CCHHHHHHHHHHHHHhhc--CceEEEEecChh
Q 035832 180 DLLILDEPLAG-LDWKARADVVKLLKHLKK--ELTILVVSHDLK 220 (245)
Q Consensus 180 ~llllDEPts~-LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~ 220 (245)
++++||||++ ||+... ++++++.+ +.++|+++||+.
T Consensus 130 -ll~ldePt~~~Ld~~~~----~~l~~l~~~~~iilV~~K~Dl~ 168 (301)
T 2qnr_A 130 -CFYFISPFGHGLKPLDV----AFMKAIHNKVNIVPVIAKADTL 168 (301)
T ss_dssp -EEEEECSSSSSCCHHHH----HHHHHHTTTSCEEEEECCGGGS
T ss_pred -eeeeecCcccCCCHHHH----HHHHHHHhcCCEEEEEEeCCCC
Confidence 9999999985 999873 55555543 478999999974
|
| >2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.87 E-value=2.5e-25 Score=182.53 Aligned_cols=157 Identities=18% Similarity=0.134 Sum_probs=105.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCC
Q 035832 45 KSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWP 124 (245)
Q Consensus 45 Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~ 124 (245)
|++++|+||||||||||+++|+|+++ ++| |.++|.+..... .+++++||++|+.... .....++.++..
T Consensus 1 G~~i~i~G~nG~GKTTll~~l~g~~~-~~G-i~~~g~~~~~~~------~~~~~ig~~~~~~~g~---~~~l~~~~~~~~ 69 (189)
T 2i3b_A 1 ARHVFLTGPPGVGKTTLIHKASEVLK-SSG-VPVDGFYTEEVR------QGGRRIGFDVVTLSGT---RGPLSRVGLEPP 69 (189)
T ss_dssp CCCEEEESCCSSCHHHHHHHHHHHHH-HTT-CCCEEEECCEEE------TTSSEEEEEEEETTSC---EEEEEECCCCCC
T ss_pred CCEEEEECCCCChHHHHHHHHHhhcc-cCC-EEEcCEecchhH------hhhceEEEEEEecccc---eehhhcccccCC
Confidence 78999999999999999999999999 999 999987763211 2367899999985211 110000001000
Q ss_pred CCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHH-HHHH---HHhhCCCEEEEeC--CCCCCCHHHHHH
Q 035832 125 RQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRL-ALAI---QLVQVPDLLILDE--PLAGLDWKARAD 198 (245)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv-~iAr---al~~~p~llllDE--Pts~LD~~~~~~ 198 (245)
. ..... ...++...+|+|||+++ ++++ |++.+|+++|+|| |+..+|+...+.
T Consensus 70 ~---------------------~~~~~-~v~~~~~~ls~~er~~~~~l~~~a~A~~~~~dvlilDE~g~~~~~~~~~~~~ 127 (189)
T 2i3b_A 70 P---------------------GKREC-RVGQYVVDLTSFEQLALPVLRNADCSSGPGQRVCVIDEIGKMELFSQLFIQA 127 (189)
T ss_dssp S---------------------SSCCE-ESSSSEECHHHHHTTTTTTTCCCCCCCSSCCCCEEECCCSTTTTTCSHHHHH
T ss_pred c---------------------ccccc-ccceEEEcchHHHHHHHHHHhhhhHhhccCCCEEEEeCCCccccccHHHHHH
Confidence 0 00011 24566778999999988 4455 6899999999999 899999987766
Q ss_pred HHHHHHHhhcCceEEE----EecChhHHHhhccEEEEEeCCeEEE
Q 035832 199 VVKLLKHLKKELTILV----VSHDLKEMAALVDHSWRMDMGGFLV 239 (245)
Q Consensus 199 i~~~l~~l~~~~tiii----~tHd~~~~~~~~d~v~~l~~G~i~~ 239 (245)
+.+++.. ..++|+ ++|+.+ ..++|++..+.+|+++.
T Consensus 128 l~~~l~~---~~~~ilgti~vsh~~~--~~~vd~i~~~~~~~i~~ 167 (189)
T 2i3b_A 128 VRQTLST---PGTIILGTIPVPKGKP--LALVEEIRNRKDVKVFN 167 (189)
T ss_dssp HHHHHHC---SSCCEEEECCCCCSSC--CTTHHHHHTTCCSEEEE
T ss_pred HHHHHhC---CCcEEEEEeecCCCCc--hHHHHHHeecCCcEEEE
Confidence 6666653 334443 349863 23455555556666654
|
| >1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D* | Back alignment and structure |
|---|
Probab=99.86 E-value=1.1e-24 Score=190.98 Aligned_cols=154 Identities=16% Similarity=0.046 Sum_probs=105.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCC-CCCCC-CCCcEEEEecCCCCCCCcccHHHHHHh
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNN-SPEPL-PPEKVGIVFQFPERYFVADNVLDEVIF 121 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~-~~~~~-~~~~i~~v~Q~~~~~~~~~tv~e~l~~ 121 (245)
+|++++|+||||||||||+++|+|+++|++|+|.+.|.++...... ....+ .+..++|+||++. .++..++++|+.+
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~~r~~a~~ql~~~~~~~~i~~v~q~~~-~~p~~~v~~~v~~ 179 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDTFRAAGGTQLSEWGKRLSIPVIQGPEG-TDSAALAYDAVQA 179 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCCSSTTTTHHHHHHHHHHTCCEECCCTT-CCHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecCCChhHHHHHHHHHHhcCceEEEeCCC-CCHHHHHHHHHHH
Confidence 6999999999999999999999999999999999999887432110 00000 1245899999975 5667789999876
Q ss_pred cCCCCCCchhHHHHHHHHHH-HHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHH
Q 035832 122 GWPRQSGSIQLKEYLALNLQ-RAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVV 200 (245)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~-~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~ 200 (245)
+... ... .+++..|+.+ .....++..++||++||||++.+|+.++| .||+.+...++
T Consensus 180 ~~~~-------------~~d~~llDt~G~~~----~~~~~~~eLs~~r~~iaRal~~~P~~~lL-----vLDa~t~~~~~ 237 (304)
T 1rj9_A 180 MKAR-------------GYDLLFVDTAGRLH----TKHNLMEELKKVKRAIAKADPEEPKEVWL-----VLDAVTGQNGL 237 (304)
T ss_dssp HHHH-------------TCSEEEECCCCCCT----TCHHHHHHHHHHHHHHHHHCTTCCSEEEE-----EEETTBCTHHH
T ss_pred HHhC-------------CCCEEEecCCCCCC----chHHHHHHHHHHHHHHHHhhcCCCCeEEE-----EEcHHHHHHHH
Confidence 4100 000 0122233322 22233455569999999999999994444 45555555666
Q ss_pred HHHHHhhc--CceEEEEecChh
Q 035832 201 KLLKHLKK--ELTILVVSHDLK 220 (245)
Q Consensus 201 ~~l~~l~~--~~tiii~tHd~~ 220 (245)
+.++.+.+ +.|+|++||+.+
T Consensus 238 ~~~~~~~~~~~~t~iivTh~d~ 259 (304)
T 1rj9_A 238 EQAKKFHEAVGLTGVIVTKLDG 259 (304)
T ss_dssp HHHHHHHHHHCCSEEEEECTTS
T ss_pred HHHHHHHHHcCCcEEEEECCcc
Confidence 66666642 689999999854
|
| >3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.9e-25 Score=183.64 Aligned_cols=144 Identities=15% Similarity=0.053 Sum_probs=111.9
Q ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCC--CcccHHHHH
Q 035832 42 LPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYF--VADNVLDEV 119 (245)
Q Consensus 42 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~--~~~tv~e~l 119 (245)
.++|++++|+||||||||||+++|+|++.| +++|++|++. ++ ...++.++.
T Consensus 3 ~~~~~~i~i~G~~GsGKSTl~~~l~~~~~~--------------------------~i~~v~~d~~-~~~~~~~~~~~~~ 55 (211)
T 3asz_A 3 APKPFVIGIAGGTASGKTTLAQALARTLGE--------------------------RVALLPMDHY-YKDLGHLPLEERL 55 (211)
T ss_dssp --CCEEEEEEESTTSSHHHHHHHHHHHHGG--------------------------GEEEEEGGGC-BCCCTTSCHHHHH
T ss_pred CCCcEEEEEECCCCCCHHHHHHHHHHHhCC--------------------------CeEEEecCcc-ccCcccccHHHhc
Confidence 578999999999999999999999998764 3789999873 33 346888887
Q ss_pred HhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHH----HHHHHHHHHHhhCCCEEEEeCCCCC-----
Q 035832 120 IFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGY----KRRLALAIQLVQVPDLLILDEPLAG----- 190 (245)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq----kqrv~iAral~~~p~llllDEPts~----- 190 (245)
.+.+.. ... .....+.++++.+++.+. .+.++.++|+|| +||+++|++++.+|+++++||||++
T Consensus 56 ~~~~~~-~~~-----~~~~~~~~~l~~~~~~~~-~~~~~~~~s~g~~~~~~~~~~~~~~li~~~~ll~~de~~~~~~d~~ 128 (211)
T 3asz_A 56 RVNYDH-PDA-----FDLALYLEHAQALLRGLP-VEMPVYDFRAYTRSPRRTPVRPAPVVILEGILVLYPKELRDLMDLK 128 (211)
T ss_dssp HSCTTS-GGG-----BCHHHHHHHHHHHHTTCC-EEECCEETTTTEECSSCEEECCCSEEEEESTTTTSSHHHHTTCSEE
T ss_pred CCCCCC-hhh-----hhHHHHHHHHHHHHcCCC-cCCCcccCcccCCCCCeEEeCCCcEEEEeehhhccCHHHHHhcCEE
Confidence 654211 000 112245566777777764 577889999997 4788999999999999999999999
Q ss_pred --CCHHHHHHHHHHHHHh-h-cCceEEEEecCh
Q 035832 191 --LDWKARADVVKLLKHL-K-KELTILVVSHDL 219 (245)
Q Consensus 191 --LD~~~~~~i~~~l~~l-~-~~~tiii~tHd~ 219 (245)
||+.....+.+.+.+. . ++.|+++++|+.
T Consensus 129 i~ld~~~~~~~~r~l~r~~~~~g~t~~~~~~~~ 161 (211)
T 3asz_A 129 VFVDADADERFIRRLKRDVLERGRSLEGVVAQY 161 (211)
T ss_dssp EEEECCHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred EEEeCCHHHHHHHHHHHHHHHhCCCHHHHHHHH
Confidence 9999999999998875 3 468999999984
|
| >2vf7_A UVRA2, excinuclease ABC, subunit A.; DNA-binding protein, nucleotide-binding, zinc-binding domain, SOS response, metal-binding; HET: ADP; 2.30A {Deinococcus radiodurans} PDB: 2vf8_A* | Back alignment and structure |
|---|
Probab=99.85 E-value=2.4e-21 Score=189.04 Aligned_cols=103 Identities=31% Similarity=0.387 Sum_probs=91.6
Q ss_pred HHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCC--CEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEE
Q 035832 138 LNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVP--DLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILV 214 (245)
Q Consensus 138 ~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p--~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii 214 (245)
.++. .+..+||....+++++.+|||||||||+||++|+.+| .+|||||||++||+...+.++++|+++++ +.|||+
T Consensus 358 ~rl~-~L~~vGL~~l~l~r~~~tLSGGe~QRV~LA~aL~~~p~~~llILDEPT~~Ld~~~~~~L~~~l~~L~~~G~TVIv 436 (842)
T 2vf7_A 358 KRLD-VLLHLGLGYLGLDRSTPTLSPGELQRLRLATQLYSNLFGVVYVLDEPSAGLHPADTEALLSALENLKRGGNSLFV 436 (842)
T ss_dssp HHHH-HHHHTTCTTSBTTCBGGGSCHHHHHHHHHHHHTTTCCCSCEEEEECTTTTCCGGGHHHHHHHHHHHHTTTCEEEE
T ss_pred HHHH-HHHhCCCCcCCccCCcCcCCHHHHHHHHHHHHHhhCCCCeEEEeeCccccCCHHHHHHHHHHHHHHHHcCCEEEE
Confidence 3444 6788999864469999999999999999999999999 59999999999999999999999999975 689999
Q ss_pred EecChhHHHhhccEEEEE------eCCeEEEecc
Q 035832 215 VSHDLKEMAALVDHSWRM------DMGGFLVEQR 242 (245)
Q Consensus 215 ~tHd~~~~~~~~d~v~~l------~~G~i~~~~~ 242 (245)
|+||++.+ ..||+|++| ++|+++..+.
T Consensus 437 VeHdl~~l-~~aD~ii~lgpgaG~~~G~iv~~g~ 469 (842)
T 2vf7_A 437 VEHDLDVI-RRADWLVDVGPEAGEKGGEILYSGP 469 (842)
T ss_dssp ECCCHHHH-TTCSEEEEECSSSGGGCCSEEEEEC
T ss_pred EcCCHHHH-HhCCEEEEeCCCcccCCCEEEEecC
Confidence 99999976 579999999 7888988754
|
| >1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=99.85 E-value=2.3e-24 Score=177.26 Aligned_cols=176 Identities=12% Similarity=0.037 Sum_probs=100.3
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-----CCCcceEEEcCc-------cCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLS-----KPTSGSINIRGY-------NND 84 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~-----~p~~G~i~~~g~-------~~~ 84 (245)
+|+++|+++.|+ .+++++ |.+.+|..++|+|+||||||||++.|+|.. .|+.|++.+.+. .+.
T Consensus 3 ~l~~~~~~~~~~---~~~l~~--~~~~~~~~v~lvG~~g~GKSTLl~~l~g~~~~~~~~~~~G~~~~~~~~~~~~~~~l~ 77 (210)
T 1pui_A 3 NLNYQQTHFVMS---APDIRH--LPSDTGIEVAFAGRSNAGKSSALNTLTNQKSLARTSKTPGRTQLINLFEVADGKRLV 77 (210)
T ss_dssp --------CEEE---ESSGGG--SSCSCSEEEEEEECTTSSHHHHHTTTCCC-------------CCEEEEEEETTEEEE
T ss_pred chhhhhhhheee---cCCHhH--CCCCCCcEEEEECCCCCCHHHHHHHHhCCCccccccCCCccceeeEEEEecCCEEEE
Confidence 589999999995 257888 899999999999999999999999999998 788887754221 110
Q ss_pred CCCCCCC---CC----CCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCC
Q 035832 85 GEPNNSP---EP----LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKD 157 (245)
Q Consensus 85 ~~~~~~~---~~----~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~ 157 (245)
..+-... .. .+++.+++++|... ...... +.... ..... .....+.++++..++.......+
T Consensus 78 Dt~G~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~------~v~d~-~~~~~---~~~~~~~~~~~~~~~~~~~v~nK 146 (210)
T 1pui_A 78 DLPGYGYAEVPEEMKRKWQRALGEYLEKRQ-SLQGLV------VLMDI-RHPLK---DLDQQMIEWAVDSNIAVLVLLTK 146 (210)
T ss_dssp ECCCCC------CCHHHHHHHHHHHHHHCT-TEEEEE------EEEET-TSCCC---HHHHHHHHHHHHTTCCEEEEEEC
T ss_pred ECcCCcccccCHHHHHHHHHHHHHHHHhhh-cccEEE------EEEEC-CCCCc---hhHHHHHHHHHHcCCCeEEEEec
Confidence 0000000 00 00000111111100 000000 00000 00000 11223455667778765433667
Q ss_pred CCCCChHHHHH-HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc
Q 035832 158 PHSLSGGYKRR-LALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK 208 (245)
Q Consensus 158 ~~~LSgGqkqr-v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~ 208 (245)
+..+|+||+|| +..+++++.+|+++++|||||++|+.+.+++++.|.++..
T Consensus 147 ~D~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~Sal~~~~~~~l~~~l~~~~~ 198 (210)
T 1pui_A 147 ADKLASGARKAQLNMVREAVLAFNGDVQVETFSSLKKQGVDKLRQKLDTWFS 198 (210)
T ss_dssp GGGSCHHHHHHHHHHHHHHHGGGCSCEEEEECBTTTTBSHHHHHHHHHHHHC
T ss_pred ccCCCchhHHHHHHHHHHHHHhcCCCCceEEEeecCCCCHHHHHHHHHHHHh
Confidence 88999999999 8999999999999999999999999999999999988753
|
| >1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A* | Back alignment and structure |
|---|
Probab=99.84 E-value=2.6e-22 Score=195.68 Aligned_cols=167 Identities=15% Similarity=0.117 Sum_probs=109.5
Q ss_pred ceEEEEeEEEECCC---CccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC-CcceEEEcCccCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPG---TQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP-TSGSINIRGYNNDGEPNNSP 91 (245)
Q Consensus 16 ~~l~~~~l~~~y~~---~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g~~~~~~~~~~~ 91 (245)
+.|.+++...-.-. +...+++|+||+ ++|++++|+||||||||||||+|+|+..+ ..|. .+ +
T Consensus 576 ~~i~i~~~rHP~le~~~~~~~vlndisl~-~~g~i~~ItGpNGsGKSTlLr~iagl~~~~q~G~------~v---p---- 641 (800)
T 1wb9_A 576 PGIRITEGRHPVVEQVLNEPFIANPLNLS-PQRRMLIITGPNMGGKSTYMRQTALIALMAYIGS------YV---P---- 641 (800)
T ss_dssp SCEEEEEECCTTHHHHCSSCCCCEEEEEC-SSSCEEEEECCTTSSHHHHHHHHHHHHHHHTTTC------CB---S----
T ss_pred CCEEEEeccccEEEccCCCceeeeccccc-CCCcEEEEECCCCCChHHHHHHHHHHHHHHhcCc------cc---c----
Confidence 35777775421100 124689999999 99999999999999999999999997432 2221 11 0
Q ss_pred CCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHH
Q 035832 92 EPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLAL 171 (245)
Q Consensus 92 ~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~i 171 (245)
....++++++| .+..+++.+++.. ...++|+++++ ++.
T Consensus 642 --a~~~~i~~~~~----i~~~~~~~d~l~~-----------------------------------~~stf~~e~~~-~~~ 679 (800)
T 1wb9_A 642 --AQKVEIGPIDR----IFTRVGAADDLAS-----------------------------------GRSTFMVEMTE-TAN 679 (800)
T ss_dssp --SSEEEECCCCE----EEEEEC----------------------------------------------CHHHHHH-HHH
T ss_pred --hhcccceeHHH----HHhhCCHHHHHHh-----------------------------------hhhhhhHHHHH-HHH
Confidence 01234555544 2223333333221 12345777765 444
Q ss_pred HHHHhhCCCEEEEeCCCCCCCHHHHHHH-HHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEE
Q 035832 172 AIQLVQVPDLLILDEPLAGLDWKARADV-VKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLV 239 (245)
Q Consensus 172 Aral~~~p~llllDEPts~LD~~~~~~i-~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~ 239 (245)
+...+.+|+++|||||++|+|+.....+ +.+++.+.+ +.++|++||+.+.+ .+||++..+.+|++..
T Consensus 680 il~~a~~psLlLLDEp~~Gtd~~d~~~i~~~ll~~l~~~~g~~vl~~TH~~el~-~l~d~~~~v~n~~~~~ 749 (800)
T 1wb9_A 680 ILHNATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT-QLPEKMEGVANVHLDA 749 (800)
T ss_dssp HHHHCCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG-GHHHHSTTEEEEEEEE
T ss_pred HHHhccCCCEEEEECCCCCCChhHHHHHHHHHHHHHHhccCCeEEEEeCCHHHH-HHhhhhhceEEEEEEE
Confidence 5556899999999999999999877775 778888754 68999999999865 5898876666666654
|
| >2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2} | Back alignment and structure |
|---|
Probab=99.83 E-value=5.2e-21 Score=159.00 Aligned_cols=169 Identities=13% Similarity=0.028 Sum_probs=113.2
Q ss_pred cceeeeeeE-EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCC
Q 035832 32 VDILNGVSF-SLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYF 110 (245)
Q Consensus 32 ~~il~~vsl-~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~ 110 (245)
.+.|+++.+ .+++|++++|+||||||||||++.|++...+..|.|.+.+.+..... .. .+...+++.+|....
T Consensus 9 ~~~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~~~~---~~-~~~~~~~~~~~~~~~-- 82 (235)
T 2w0m_A 9 ILDFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEESRDS---II-RQAKQFNWDFEEYIE-- 82 (235)
T ss_dssp CHHHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSCHHH---HH-HHHHHTTCCCGGGBT--
T ss_pred chHHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccCHHH---HH-HHHHHhcchHHHHhh--
Confidence 457899988 89999999999999999999999999988877788877553321000 00 000012222221100
Q ss_pred CcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCC--EEEEeCCC
Q 035832 111 VADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPD--LLILDEPL 188 (245)
Q Consensus 111 ~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~--llllDEPt 188 (245)
+++.+. .. . ...++ ... . ....|.++.++...+.+...+|+ ++++||||
T Consensus 83 ------~~~~~~-~~-~----------------~~~~~-~~~-~---~~~~~~~~~~~~~~~~~~~~~~~~~llilDe~~ 133 (235)
T 2w0m_A 83 ------KKLIII-DA-L----------------MKEKE-DQW-S---LVNLTPEELVNKVIEAKQKLGYGKARLVIDSVS 133 (235)
T ss_dssp ------TTEEEE-EC-C----------------C-----CTT-B---CSSCCHHHHHHHHHHHHHHHCSSCEEEEEETGG
T ss_pred ------CCEEEE-ec-c----------------ccccC-cee-e---ecCCCHHHHHHHHHHHHHhhCCCceEEEEECch
Confidence 000000 00 0 00001 111 1 12349999999988888889999 99999999
Q ss_pred CCC--CHHHHHHHHHHHHHhh-c-CceEEEEecCh--------hHHHhhccEEEEEeCC
Q 035832 189 AGL--DWKARADVVKLLKHLK-K-ELTILVVSHDL--------KEMAALVDHSWRMDMG 235 (245)
Q Consensus 189 s~L--D~~~~~~i~~~l~~l~-~-~~tiii~tHd~--------~~~~~~~d~v~~l~~G 235 (245)
+.+ |+..+.++++.|+++. + +.|||++||+. ..+..+||++++|+..
T Consensus 134 ~~~~~d~~~~~~~~~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~d~vi~l~~~ 192 (235)
T 2w0m_A 134 ALFLDKPAMARKISYYLKRVLNKWNFTIYATSQYAITTSQAFGFGVEHVADGIIRFRRM 192 (235)
T ss_dssp GGSSSCGGGHHHHHHHHHHHHHHTTEEEEEEEC-----------CHHHHCSEEEEEEEE
T ss_pred HhhcCCHHHHHHHHHHHHHHHHhCCCeEEEEeccCcccccccccchheeeeEEEEEEEE
Confidence 888 9999999999999885 3 68999999999 5588999999999853
|
| >3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A* | Back alignment and structure |
|---|
Probab=99.83 E-value=6.7e-22 Score=176.77 Aligned_cols=147 Identities=17% Similarity=0.089 Sum_probs=100.1
Q ss_pred EeEEEECCCCccceeeeeeE-------EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-cceEEEcCccCCCCCCCCCC
Q 035832 21 RDVSYRPPGTQVDILNGVSF-------SLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPT-SGSINIRGYNNDGEPNNSPE 92 (245)
Q Consensus 21 ~~l~~~y~~~~~~il~~vsl-------~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~~~~ 92 (245)
.+++++|.....+.|+++.+ ...+|++++|+||||||||||+++|+|+++|+ .|.|...+.++..
T Consensus 92 ~~~~iR~~~~~~~~l~~lg~~~~l~~l~~~~~g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~------- 164 (356)
T 3jvv_A 92 AGAVFRTIPSKVLTMEELGMGEVFKRVSDVPRGLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEF------- 164 (356)
T ss_dssp EEEEEEEECCSCCCTTTTTCCHHHHHHHHCSSEEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCS-------
T ss_pred cEEEEEECCCCCCCHHHcCChHHHHHHHhCCCCEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHh-------
Confidence 34555553323455677766 67889999999999999999999999999987 5666554333211
Q ss_pred CCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHH
Q 035832 93 PLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALA 172 (245)
Q Consensus 93 ~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iA 172 (245)
......++++|... ..... . ..+ +||
T Consensus 165 -~~~~~~~~v~q~~~-~~~~~---------------~---------------------------------~~~----~La 190 (356)
T 3jvv_A 165 -VHESKKCLVNQREV-HRDTL---------------G---------------------------------FSE----ALR 190 (356)
T ss_dssp -CCCCSSSEEEEEEB-TTTBS---------------C---------------------------------HHH----HHH
T ss_pred -hhhccccceeeeee-ccccC---------------C---------------------------------HHH----HHH
Confidence 01223445555431 00000 0 000 999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCC
Q 035832 173 IQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMG 235 (245)
Q Consensus 173 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G 235 (245)
+||.++|++|++|||| |+++.+.+.+. ...+.+||+++|+.+.+ ..|||++.|..|
T Consensus 191 ~aL~~~PdvillDEp~---d~e~~~~~~~~---~~~G~~vl~t~H~~~~~-~~~dRli~l~~~ 246 (356)
T 3jvv_A 191 SALREDPDIILVGEMR---DLETIRLALTA---AETGHLVFGTLHTTSAA-KTIDRVVDVFPA 246 (356)
T ss_dssp HHTTSCCSEEEESCCC---SHHHHHHHHHH---HHTTCEEEEEESCSSHH-HHHHHHHHTSCH
T ss_pred HHhhhCcCEEecCCCC---CHHHHHHHHHH---HhcCCEEEEEEccChHH-HHHHHHhhhcCc
Confidence 9999999999999999 76664444333 23478999999999977 789999888543
|
| >1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=99.83 E-value=3.4e-22 Score=178.36 Aligned_cols=144 Identities=23% Similarity=0.236 Sum_probs=102.4
Q ss_pred ceeeee-eEEEcCCCEEEEECCCCCcHHHHHHHHhCCC--CCCc----ce-EEEcCccCCCCCCCCCCCCCCCcEEEEec
Q 035832 33 DILNGV-SFSLPEKSFGLIFGRSGSGKTTLLQLLAGLS--KPTS----GS-INIRGYNNDGEPNNSPEPLPPEKVGIVFQ 104 (245)
Q Consensus 33 ~il~~v-sl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~--~p~~----G~-i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q 104 (245)
+.|+.+ ++.|++|++++|+||||||||||++.+++.. +|++ |. |++++++.. .++++++++|
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~~~----------~~~~i~~i~q 187 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTENTF----------RPERIREIAQ 187 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSSCC----------CHHHHHHHHH
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCCCC----------CHHHHHHHHH
Confidence 356665 6899999999999999999999999999998 6776 67 888875431 1356888898
Q ss_pred CCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh-------h
Q 035832 105 FPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV-------Q 177 (245)
Q Consensus 105 ~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~-------~ 177 (245)
.+. + ...++.+|+.+.... -|.+++|++.++++++ .
T Consensus 188 ~~~-~-~~~~v~~ni~~~~~~-----------------------------------~~~~~~~~l~~~~~~~~~lS~G~~ 230 (349)
T 1pzn_A 188 NRG-L-DPDEVLKHIYVARAF-----------------------------------NSNHQMLLVQQAEDKIKELLNTDR 230 (349)
T ss_dssp TTT-C-CHHHHGGGEEEEECC-----------------------------------SHHHHHHHHHHHHHHHHHSSSSSS
T ss_pred HcC-C-CHHHHhhCEEEEecC-----------------------------------ChHHHHHHHHHHHHHHHHhccccC
Confidence 864 2 334666666553110 0334555555555555 7
Q ss_pred CCCEEEEeCCCCCCCHHH------------HHHHHHHHHHhhc--CceEEEEecChhHHH
Q 035832 178 VPDLLILDEPLAGLDWKA------------RADVVKLLKHLKK--ELTILVVSHDLKEMA 223 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~------------~~~i~~~l~~l~~--~~tiii~tHd~~~~~ 223 (245)
+|+++|+||||+++|+.. ..+++..|.++.+ ++|||+++|......
T Consensus 231 ~~~llIlDs~ta~ld~~~~~~~~~~~r~~~~~~~l~~L~~la~~~~~tvii~~h~~~~~~ 290 (349)
T 1pzn_A 231 PVKLLIVDSLTSHFRSEYIGRGALAERQQKLAKHLADLHRLANLYDIAVFVTNQVQARPD 290 (349)
T ss_dssp CEEEEEEETSSTTHHHHCCSTTTHHHHHHHHHHHHHHHHHHHHHTTCEEEEEEECC----
T ss_pred CCCEEEEeCchHhhhhhhcccccHHHHHHHHHHHHHHHHHHHHHcCcEEEEEcccccccc
Confidence 899999999999999862 3556666666643 689999999876554
|
| >2qag_C Septin-7; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.3e-22 Score=181.32 Aligned_cols=166 Identities=14% Similarity=0.151 Sum_probs=99.1
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
.+|.++||+++|++ +.+++++||+| +|+||||||||||+++|+|+..|..| .+|..+.... ...
T Consensus 10 ~~l~~~~l~~~y~~--~~vl~~vsf~I------~lvG~sGaGKSTLln~L~g~~~~~~~---~~~~~~~~~~-----t~~ 73 (418)
T 2qag_C 10 GYVGFANLPNQVYR--KSVKRGFEFTL------MVVGESGLGKSTLINSLFLTDLYSPE---YPGPSHRIKK-----TVQ 73 (418)
T ss_dssp -----CCCCCCTTT--TTCC-CCCEEE------EEECCTTSSHHHHHHHHTTCCCCCCC---CCSCC----------CCE
T ss_pred CcEEEEecceeECC--EEEecCCCEEE------EEECCCCCcHHHHHHHHhCCCCCCCC---CCCcccCCcc-----cee
Confidence 46999999999964 56999999998 99999999999999999999987665 1332221110 111
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
...+++++|.+. .+..+|++|++.++.... . ......+.+.++ ..++.+++||++||||+
T Consensus 74 ~~~i~~v~q~~~-~~~~Ltv~Dt~g~~~~~~-~-----~~~~~~i~~~i~-------------~~~~~~l~qr~~IaRal 133 (418)
T 2qag_C 74 VEQSKVLIKEGG-VQLLLTIVDTPGFGDAVD-N-----SNCWQPVIDYID-------------SKFEDYLNAESRVNRRQ 133 (418)
T ss_dssp EEEEECC-------CEEEEEEECC-----------------CHHHHHHHH-------------HHHHHHTTTSCC-CCCC
T ss_pred eeeEEEEEecCC-cccceeeeechhhhhhcc-c-----hhhHHHHHHHHH-------------HHHHHHHHHHHHHHHHh
Confidence 346899999864 556788888887752210 0 000011111111 13455677899999999
Q ss_pred hhCCC---EEEEeCCC-CCCCHHHHHHHHHHHHHhhcCceEEEEecChhH
Q 035832 176 VQVPD---LLILDEPL-AGLDWKARADVVKLLKHLKKELTILVVSHDLKE 221 (245)
Q Consensus 176 ~~~p~---llllDEPt-s~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~ 221 (245)
+.+|+ +|++|||| .+||+... ++++.+..+.+||+|.|-.+.
T Consensus 134 ~~d~~~~vlL~ldePt~~~L~~~d~----~~lk~L~~~v~iIlVinK~Dl 179 (418)
T 2qag_C 134 MPDNRVQCCLYFIAPSGHGLKPLDI----EFMKRLHEKVNIIPLIAKADT 179 (418)
T ss_dssp CCCC-CCEEEEECCC-CCSCCHHHH----HHHHHHTTTSEEEEEEESTTS
T ss_pred ccCCCeeEEEEEecCcccCCCHHHH----HHHHHHhccCcEEEEEEcccC
Confidence 99999 99999999 69999874 344455556777777776553
|
| >1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A | Back alignment and structure |
|---|
Probab=99.81 E-value=2.9e-20 Score=160.41 Aligned_cols=151 Identities=17% Similarity=0.133 Sum_probs=103.8
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHH-
Q 035832 41 SLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEV- 119 (245)
Q Consensus 41 ~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l- 119 (245)
.+++|++++|+||||||||||++.+++... .|.++ .|.+.. ....+.|+..+.. . ..+...+
T Consensus 26 gl~~G~i~~i~G~~GsGKTtl~~~l~~~~~--~g~~~-~g~~~~----------~~~~v~~~~~e~~-~---~~~~~r~~ 88 (279)
T 1nlf_A 26 NMVAGTVGALVSPGGAGKSMLALQLAAQIA--GGPDL-LEVGEL----------PTGPVIYLPAEDP-P---TAIHHRLH 88 (279)
T ss_dssp TEETTSEEEEEESTTSSHHHHHHHHHHHHH--TCCCT-TCCCCC----------CCCCEEEEESSSC-H---HHHHHHHH
T ss_pred CccCCCEEEEEcCCCCCHHHHHHHHHHHHh--cCCCc-CCCccC----------CCccEEEEECCCC-H---HHHHHHHH
Confidence 478999999999999999999999998664 56653 343210 1245777765431 1 1222222
Q ss_pred HhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCC--CCCHHH--
Q 035832 120 IFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLA--GLDWKA-- 195 (245)
Q Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts--~LD~~~-- 195 (245)
.++... . .....++++.+++.+. .++++..||+||+|++ ++++.+|+++|+||||+ ++|+..
T Consensus 89 ~~g~~~---~-------~~~~~~~~~~l~l~~~-~~~~~~~ls~g~~~~i---~~l~~~~~livlDe~~~~~~~d~~~~~ 154 (279)
T 1nlf_A 89 ALGAHL---S-------AEERQAVADGLLIQPL-IGSLPNIMAPEWFDGL---KRAAEGRRLMVLDTLRRFHIEEENASG 154 (279)
T ss_dssp HHHTTS---C-------HHHHHHHHHHEEECCC-TTSCCCTTSHHHHHHH---HHHHTTCSEEEEECGGGGCCSCTTCHH
T ss_pred HHHhhc---C-------hhhhhhccCceEEeec-CCCCcccCCHHHHHHH---HHhcCCCCEEEECCHHHhcCCCcCchH
Confidence 122110 0 1123456778888765 5889999999998865 68889999999999999 999854
Q ss_pred -HHHHHHHHHHhh-c-CceEEEEecChhHH
Q 035832 196 -RADVVKLLKHLK-K-ELTILVVSHDLKEM 222 (245)
Q Consensus 196 -~~~i~~~l~~l~-~-~~tiii~tHd~~~~ 222 (245)
..++++.|.++. + ++|||+++|+....
T Consensus 155 ~~~~~~~~L~~l~~~~g~tvi~i~H~~~~~ 184 (279)
T 1nlf_A 155 PMAQVIGRMEAIAADTGCSIVFLHHASKGA 184 (279)
T ss_dssp HHHHHHHHHHHHHHHHCCEEEEEEEC----
T ss_pred HHHHHHHHHHHHHHHcCCEEEEEecCCCcc
Confidence 478888888874 3 69999999998765
|
| >3kta_B Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xew_Y 1xex_B* | Back alignment and structure |
|---|
Probab=99.81 E-value=9.7e-20 Score=147.10 Aligned_cols=82 Identities=27% Similarity=0.187 Sum_probs=71.7
Q ss_pred CCCCCCCCChHHHHHHHHHHHHhh----CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEE
Q 035832 154 LDKDPHSLSGGYKRRLALAIQLVQ----VPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHS 229 (245)
Q Consensus 154 ~~~~~~~LSgGqkqrv~iAral~~----~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v 229 (245)
..+++..||||||||++||++|+. +|+++||||||++||+.++..+.++|+++.++.++|++||+... ..+||++
T Consensus 58 ~~~~~~~LSgGekqr~ala~~la~~~~~~~~~llLDEp~a~LD~~~~~~~~~~l~~~~~~~~~ivith~~~~-~~~ad~i 136 (173)
T 3kta_B 58 DVKRIEAMSGGEKALTALAFVFAIQKFKPAPFYLFDEIDAHLDDANVKRVADLIKESSKESQFIVITLRDVM-MANADKI 136 (173)
T ss_dssp SCCCGGGCCHHHHHHHHHHHHHHHHHHSCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSCHHH-HTTCSEE
T ss_pred cccccccCCHHHHHHHHHHHHHHhcccCCCCEEEECCCccCCCHHHHHHHHHHHHHhccCCEEEEEEecHHH-HHhCCEE
Confidence 356788999999999999999975 46999999999999999999999999998777899999999765 5789999
Q ss_pred EEE--eCCe
Q 035832 230 WRM--DMGG 236 (245)
Q Consensus 230 ~~l--~~G~ 236 (245)
+.+ .+|.
T Consensus 137 ~~v~~~~g~ 145 (173)
T 3kta_B 137 IGVSMRDGV 145 (173)
T ss_dssp EEEEEETTE
T ss_pred EEEEecCCE
Confidence 865 4553
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=99.79 E-value=1.2e-23 Score=188.56 Aligned_cols=164 Identities=16% Similarity=0.044 Sum_probs=111.8
Q ss_pred eeeeeeEEEcC--CCEEEEECCCCCcHHHHHHHHhCCCCCCc----ceEEEc----CccCCCCCCCCCCCCCCCcEEEEe
Q 035832 34 ILNGVSFSLPE--KSFGLIFGRSGSGKTTLLQLLAGLSKPTS----GSINIR----GYNNDGEPNNSPEPLPPEKVGIVF 103 (245)
Q Consensus 34 il~~vsl~i~~--Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~----G~i~~~----g~~~~~~~~~~~~~~~~~~i~~v~ 103 (245)
+.+.|+++|.+ |+.++|+||||||||||+++|+|+++|++ |+++++ |.++ .. ..... .+|++++
T Consensus 157 ~~~~v~~~v~~~lg~k~~IvG~nGsGKSTLlk~L~gl~~~~~~~e~G~i~i~~~~~~~~~-~~----~~~~~-~~I~~~~ 230 (365)
T 1lw7_A 157 YWKFIPKEARPFFAKTVAILGGESSGKSVLVNKLAAVFNTTSAWEYGREFVFEKLGGDEQ-AM----QYSDY-PQMALGH 230 (365)
T ss_dssp GGGGSCTTTGGGTCEEEEEECCTTSHHHHHHHHHHHHTTCEEECCTTHHHHHHSSSSCTT-SS----CTTTH-HHHHHHH
T ss_pred ChhhCCHHHHHhhhCeEEEECCCCCCHHHHHHHHHHHhCCCcchhhHHHHHHhhcCCCcc-cC----ChhHH-HHHHHHH
Confidence 35679999999 99999999999999999999999999999 888774 2222 10 01111 3467777
Q ss_pred cCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh-hCCCEE
Q 035832 104 QFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV-QVPDLL 182 (245)
Q Consensus 104 Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~-~~p~ll 182 (245)
|++. .+..++.+|+.++.. .. . ++.+..+|+|++|+..+++++. .+|+++
T Consensus 231 q~~~--~~~~t~~~nl~~~~~----~~--~---------------------~~~~~~~~~~~~~~~~i~~~~~~~~~~ll 281 (365)
T 1lw7_A 231 QRYI--DYAVRHSHKIAFIDT----DF--I---------------------TTQAFCIQYEGKAHPFLDSMIKEYPFDVT 281 (365)
T ss_dssp HHHH--HHHHHHCSSEEEESS----CH--H---------------------HHHHHHHHHHSCCCHHHHHHHHHSCCSEE
T ss_pred HHHH--HHHHhccCCEEEEeC----Cc--h---------------------HHHHHHHHHcCCCCHHHHHHHhhcCCCEE
Confidence 6642 234566666654310 00 0 0111234566778888888774 699999
Q ss_pred EEeC---CC------CCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEe
Q 035832 183 ILDE---PL------AGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMD 233 (245)
Q Consensus 183 llDE---Pt------s~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~ 233 (245)
+||| |+ .++|+..+..+.+.|.++.+ +.+||+++|. ....++++++..++
T Consensus 282 lLdE~~~p~~~~g~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~-~~~~r~~~~i~~i~ 342 (365)
T 1lw7_A 282 ILLKNNTEWVDDGLRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESP-SYLDRYNQVKAVIE 342 (365)
T ss_dssp EEEECCCC-----------CCSHHHHHHHHHHHHHGGGCCCEEEECS-SHHHHHHHHHHHHH
T ss_pred EECCCCCCcccCCCcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCC-CHHHHHHHHHHHHH
Confidence 9999 65 58999999999999988743 6899999985 35566777766554
|
| >1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A* | Back alignment and structure |
|---|
Probab=99.78 E-value=1.8e-20 Score=156.91 Aligned_cols=133 Identities=16% Similarity=0.161 Sum_probs=88.2
Q ss_pred eeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcc
Q 035832 36 NGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP--TSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVAD 113 (245)
Q Consensus 36 ~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ 113 (245)
+.-.-..++|++++|+||||||||||+++|+|+++| ..|+|.+.+.+... ..+..++|+||++. .|..+
T Consensus 7 ~~~~~~~~~G~ii~l~GpsGsGKSTLlk~L~g~~~p~~~~g~v~~ttr~~~~--------~e~~gi~y~fq~~~-~f~~~ 77 (219)
T 1s96_A 7 HHHHHHMAQGTLYIVSAPSGAGKSSLIQALLKTQPLYDTQVSVSHTTRQPRP--------GEVHGEHYFFVNHD-EFKEM 77 (219)
T ss_dssp --------CCCEEEEECCTTSCHHHHHHHHHHHSCTTTEEECCCEECSCCCT--------TCCBTTTBEECCHH-HHHHH
T ss_pred ccccccCCCCcEEEEECCCCCCHHHHHHHHhccCCCCceEEEEEecCCCCCc--------ccccCceEEECCHH-HHHHH
Confidence 334456789999999999999999999999999986 68999887654311 12456899999874 44444
Q ss_pred cH----HHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 035832 114 NV----LDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLA 189 (245)
Q Consensus 114 tv----~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts 189 (245)
++ .|++.+... ..+ .| +++ +..++..++++|||
T Consensus 78 ~~~~~f~E~~~~~~~-~yg--------------------------------~~---~~~---v~~~l~~G~illLD---- 114 (219)
T 1s96_A 78 ISRDAFLEHAEVFGN-YYG--------------------------------TS---REA---IEQVLATGVDVFLD---- 114 (219)
T ss_dssp HHTTCEEEEEEETTE-EEE--------------------------------EE---HHH---HHHHHTTTCEEEEE----
T ss_pred HhcCHHHHHHHHHhc-cCC--------------------------------CC---HHH---HHHHHhcCCeEEEE----
Confidence 44 233322100 000 00 111 22233347999999
Q ss_pred CCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHh
Q 035832 190 GLDWKARADVVKLLKHLKKELTILVVSHDLKEMAA 224 (245)
Q Consensus 190 ~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~ 224 (245)
||+.++.++++.+. ++.||+++||+++++..
T Consensus 115 -LD~~~~~~i~~~l~---~~~tI~i~th~~~~l~~ 145 (219)
T 1s96_A 115 -IDWQGAQQIRQKMP---HARSIFILPPSKIELDR 145 (219)
T ss_dssp -CCHHHHHHHHHHCT---TCEEEEEECSSHHHHHH
T ss_pred -ECHHHHHHHHHHcc---CCEEEEEECCCHHHHHH
Confidence 99999999998876 46899999999988765
|
| >2qag_B Septin-6, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.77 E-value=4e-20 Score=168.20 Aligned_cols=183 Identities=14% Similarity=0.076 Sum_probs=117.0
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCE--EEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSF--GLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~--~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
.|++++ ++.|++ .+ |+++||++++|++ ++|+||||||||||+|+|+|+. ++|.++..... ..
T Consensus 16 ~l~~~~-~~~y~~--~~-L~~vsl~i~~Gei~~vaLvG~nGaGKSTLln~L~G~~--------l~g~~~~~~~~----~~ 79 (427)
T 2qag_B 16 TVPLAG-HVGFDS--LP-DQLVNKSVSQGFCFNILCVGETGLGKSTLMDTLFNTK--------FEGEPATHTQP----GV 79 (427)
T ss_dssp -CCCCC-CC-CC----C-HHHHHHSCC-CCEEEEEEECSTTSSSHHHHHHHHTSC--------C-------CCS----SC
T ss_pred eEEEee-EEEECC--ee-cCCCceEecCCCeeEEEEECCCCCCHHHHHHHHhCcc--------ccCCcCCCCCc----cc
Confidence 467777 888964 45 9999999999999 9999999999999999999994 23333321111 11
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCC--chhHHHHHHHHHHHHHHHc-CCCC---ccCCCCC----------
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSG--SIQLKEYLALNLQRAINWV-GLDG---TSLDKDP---------- 158 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~--~~~~~~~~~~~~~~~l~~~-~l~~---~~~~~~~---------- 158 (245)
.++.++|++|++. .++.+|+.||+.++...... .............+++... ++.. ...+.++
T Consensus 80 ~~~~i~~v~Q~~~-l~~~ltv~D~~~~g~~~~~~~~~~~i~~~i~~q~~~~L~e~~~i~r~l~~~~d~rVh~~v~fI~d~ 158 (427)
T 2qag_B 80 QLQSNTYDLQESN-VRLKLTIVSTVGFGDQINKEDSYKPIVEFIDAQFEAYLQEELKIRRVLHTYHDSRIHVCLYFIAPT 158 (427)
T ss_dssp EEEEEEEEEEC---CEEEEEEEEEECCCC-CCHHHHSHHHHHHHHHHHHHHHHHC--CCCCCCCSCC--CCEEEEEECCC
T ss_pred eEeeEEEEeecCc-cccccchhhhhhhhhccccchhhhHHHHHHHHHHHHHHHHHHhhhhhhcccccccccEEEEEEeCC
Confidence 2357999999974 55678999999876321100 0001122334455556554 4431 0112221
Q ss_pred -CCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH-hhc-CceEEEEecCh
Q 035832 159 -HSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKH-LKK-ELTILVVSHDL 219 (245)
Q Consensus 159 -~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~-l~~-~~tiii~tHd~ 219 (245)
+.|+-.. +.++++|..+++++++|||+..|.+.....+.+.+++ +.. +.+|+.+|.|-
T Consensus 159 ~~~l~~~D---ieilk~L~~~~~vI~Vi~KtD~Lt~~E~~~l~~~I~~~L~~~gi~I~~is~~d 219 (427)
T 2qag_B 159 GHSLKSLD---LVTMKKLDSKVNIIPIIAKADAISKSELTKFKIKITSELVSNGVQIYQFPTDD 219 (427)
T ss_dssp C---CHHH---HHHHHHTCSCSEEEEEESCGGGSCHHHHHHHHHHHHHHHBTTBCCCCCCC---
T ss_pred CCCCCHHH---HHHHHHHhhCCCEEEEEcchhccchHHHHHHHHHHHHHHHHcCCcEEecCCCc
Confidence 2466555 7999999999999999999999999999999999986 654 58888888753
|
| >2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis} | Back alignment and structure |
|---|
Probab=99.77 E-value=1.9e-20 Score=167.68 Aligned_cols=152 Identities=15% Similarity=0.088 Sum_probs=111.3
Q ss_pred EEEeEEEE---CCCCcccee---------eeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCC
Q 035832 19 EVRDVSYR---PPGTQVDIL---------NGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGE 86 (245)
Q Consensus 19 ~~~~l~~~---y~~~~~~il---------~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~ 86 (245)
++++++|+ |+....++| +++||++++|++++|+||||||||||+++|+|+++|++|.|+++|..- .
T Consensus 137 ~f~~v~f~~~~Y~~~~~~vL~~~~~~~~~~~l~~~i~~G~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie~~~e--~ 214 (361)
T 2gza_A 137 FFKHVRPMSKSLTPFEQELLALKEAGDYMSFLRRAVQLERVIVVAGETGSGKTTLMKALMQEIPFDQRLITIEDVPE--L 214 (361)
T ss_dssp TTSCCCCSCSCCCHHHHHHHHHHHHTCHHHHHHHHHHTTCCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEESSSC--C
T ss_pred CcCccccccccccchhHHHHhhhhhHHHHHHHHHHHhcCCEEEEECCCCCCHHHHHHHHHhcCCCCceEEEECCccc--c
Confidence 56677776 743123445 999999999999999999999999999999999999999999987421 1
Q ss_pred CCCCCCCCCCCcEEEEe-cCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHH
Q 035832 87 PNNSPEPLPPEKVGIVF-QFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGY 165 (245)
Q Consensus 87 ~~~~~~~~~~~~i~~v~-Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq 165 (245)
. ....+..++|++ |++. . + ++++.
T Consensus 215 ~----~~~~~~~v~~v~~q~~~-~--------------------------------------~------------~~~~~ 239 (361)
T 2gza_A 215 F----LPDHPNHVHLFYPSEAK-E--------------------------------------E------------ENAPV 239 (361)
T ss_dssp C----CTTCSSEEEEECC-------------------------------------------------------------C
T ss_pred C----ccccCCEEEEeecCccc-c--------------------------------------c------------ccccc
Confidence 1 111356789998 5531 0 0 01222
Q ss_pred HHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcC-ceEEEEecChhHHHhhccEEEEEeCC
Q 035832 166 KRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKE-LTILVVSHDLKEMAALVDHSWRMDMG 235 (245)
Q Consensus 166 kqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~-~tiii~tHd~~~~~~~~d~v~~l~~G 235 (245)
.++..|+.++..+|+.+++|||.. .++.+.|..+..+ .|++.++|+.+ +...++|+..+..+
T Consensus 240 t~~~~i~~~l~~~pd~~l~~e~r~-------~~~~~~l~~l~~g~~~~l~t~H~~~-~~~~~~Rl~~l~~~ 302 (361)
T 2gza_A 240 TAATLLRSCLRMKPTRILLAELRG-------GEAYDFINVAASGHGGSITSCHAGS-CELTFERLALMVLQ 302 (361)
T ss_dssp CHHHHHHHHTTSCCSEEEESCCCS-------THHHHHHHHHHTTCCSCEEEEECSS-HHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHhcCCCEEEEcCchH-------HHHHHHHHHHhcCCCeEEEEECCCC-HHHHHHHHHHHHhc
Confidence 478888999999999999999986 3456677777666 57899999965 67778888777654
|
| >1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.77 E-value=2.5e-22 Score=163.10 Aligned_cols=153 Identities=18% Similarity=0.029 Sum_probs=96.9
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHH
Q 035832 41 SLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVI 120 (245)
Q Consensus 41 ~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~ 120 (245)
.+++|++++|+||||||||||+++|+|. |..|.|.++|.++..... .+..++|++|++. ...++.+++.
T Consensus 5 ~i~~g~~i~l~G~~GsGKSTl~~~La~~--~~~g~i~i~~d~~~~~~~------~~~~~~~~~~~~~---~~~~v~~~l~ 73 (191)
T 1zp6_A 5 DDLGGNILLLSGHPGSGKSTIAEALANL--PGVPKVHFHSDDLWGYIK------HGRIDPWLPQSHQ---QNRMIMQIAA 73 (191)
T ss_dssp -CCTTEEEEEEECTTSCHHHHHHHHHTC--SSSCEEEECTTHHHHTCC------SSCCCTTSSSHHH---HHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHhc--cCCCeEEEcccchhhhhh------cccccCCccchhh---hhHHHHHHHH
Confidence 4789999999999999999999999998 788999999876532110 1233567777642 3567888876
Q ss_pred hcCCCCCCchhHHHHHHHHHHHHHHHcCCCCcc-CCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHH
Q 035832 121 FGWPRQSGSIQLKEYLALNLQRAINWVGLDGTS-LDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADV 199 (245)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~-~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i 199 (245)
+..... ........++.++..+++.... .+.++..+|+|++|++++||++..+|+++ +|+...+.+
T Consensus 74 ~~~~~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ls~~~~~~v~~~R~~~r~~~~l--------ld~~~~~~~ 140 (191)
T 1zp6_A 74 DVAGRY-----AKEGYFVILDGVVRPDWLPAFTALARPLHYIVLRTTAAEAIERCLDRGGDSL--------SDPLVVADL 140 (191)
T ss_dssp HHHHHH-----HHTSCEEEECSCCCTTTTHHHHTTCSCEEEEEEECCHHHHHHHHHTTCTTSC--------CCHHHHHHH
T ss_pred HHHHHH-----hccCCeEEEeccCcHHHHHHHHhcCCCeEEEEecCCHHHHHHHHHhcCCCcc--------CCHHHHHHH
Confidence 531000 0000000000001111221110 13456789999999999999999999876 689888888
Q ss_pred HHHHHHhhcCceEEEEec
Q 035832 200 VKLLKHLKKELTILVVSH 217 (245)
Q Consensus 200 ~~~l~~l~~~~tiii~tH 217 (245)
++.+..+.....+++.|+
T Consensus 141 ~~~~~~l~~~~~~~i~t~ 158 (191)
T 1zp6_A 141 HSQFADLGAFEHHVLPVS 158 (191)
T ss_dssp HHHTTCCGGGGGGEEECT
T ss_pred HHHHhccCcccccEEECC
Confidence 888776643223344454
|
| >2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A* | Back alignment and structure |
|---|
Probab=99.76 E-value=5.9e-20 Score=165.18 Aligned_cols=129 Identities=21% Similarity=0.166 Sum_probs=95.5
Q ss_pred eeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCC-cceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCc
Q 035832 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPT-SGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVA 112 (245)
Q Consensus 34 il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~-~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~ 112 (245)
+|++++ +++|++++|+||||||||||+++|+|+++|+ +|.|.+.+.++.. ..+..++|++|..
T Consensus 127 ~l~~l~--~~~g~~i~ivG~~GsGKTTll~~l~~~~~~~~~g~I~~~e~~~e~--------~~~~~~~~v~Q~~------ 190 (372)
T 2ewv_A 127 KVLELC--HRKMGLILVTGPTGSGKSTTIASMIDYINQTKSYHIITIEDPIEY--------VFKHKKSIVNQRE------ 190 (372)
T ss_dssp SHHHHT--TSSSEEEEEECSSSSSHHHHHHHHHHHHHHHSCCEEEEEESSCCS--------CCCCSSSEEEEEE------
T ss_pred HHHHHh--hcCCCEEEEECCCCCCHHHHHHHHHhhcCcCCCcEEEEecccHhh--------hhccCceEEEeee------
Confidence 455554 7899999999999999999999999999997 8999877654321 1245677888741
Q ss_pred ccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 035832 113 DNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLD 192 (245)
Q Consensus 113 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD 192 (245)
+|++ +..+ +.+|+++|..+|+++++|||+ |
T Consensus 191 ----------------------------------~g~~-------~~~~------~~~l~~~L~~~pd~illdE~~---d 220 (372)
T 2ewv_A 191 ----------------------------------VGED-------TKSF------ADALRAALREDPDVIFVGEMR---D 220 (372)
T ss_dssp ----------------------------------BTTT-------BSCS------HHHHHHHTTSCCSEEEESCCC---S
T ss_pred ----------------------------------cCCC-------HHHH------HHHHHHHhhhCcCEEEECCCC---C
Confidence 1111 1123 469999999999999999999 7
Q ss_pred HHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEE
Q 035832 193 WKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRM 232 (245)
Q Consensus 193 ~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l 232 (245)
++.... .++....+.+++.++|+.+ +...+||++.|
T Consensus 221 ~e~~~~---~l~~~~~g~~vi~t~H~~~-~~~~~~rl~~l 256 (372)
T 2ewv_A 221 LETVET---ALRAAETGHLVFGTLHTNT-AIDTIHRIVDI 256 (372)
T ss_dssp HHHHHH---HHHHHTTTCEEEECCCCCS-HHHHHHHHHHT
T ss_pred HHHHHH---HHHHHhcCCEEEEEECcch-HHHHHHHHHHh
Confidence 766443 4444445689999999966 66778887544
|
| >2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A* | Back alignment and structure |
|---|
Probab=99.75 E-value=3.4e-22 Score=177.51 Aligned_cols=182 Identities=13% Similarity=0.157 Sum_probs=121.7
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
+|+++++++.|+. ..+++++||++.+|++++|+||||||||||+++|+|+++|++|+|.+.|.++............+
T Consensus 29 ~ie~~~~~~~~~~--~~~l~~i~~~~~~g~~v~i~G~~GaGKSTLl~~l~g~~~~~~g~v~i~~~d~~~~~~~~~~~~~~ 106 (337)
T 2qm8_A 29 LAESRRADHRAAV--RDLIDAVLPQTGRAIRVGITGVPGVGKSTTIDALGSLLTAAGHKVAVLAVDPSSTRTGGSILGDK 106 (337)
T ss_dssp HHTCSSHHHHHHH--HHHHHHHGGGCCCSEEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECGGGGSSCCCSSCCG
T ss_pred HHeeCCcccccCh--HHHHHhCCcccCCCeEEEEECCCCCCHHHHHHHHHHhhhhCCCEEEEEEEcCcccccccchHHHh
Confidence 5888999998853 46899999999999999999999999999999999999999999999998774322100011235
Q ss_pred CcEEEEecCCCCCCCcc------------cHHHHHH-h---cCC--------------------------CCCCchhHHH
Q 035832 97 EKVGIVFQFPERYFVAD------------NVLDEVI-F---GWP--------------------------RQSGSIQLKE 134 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~------------tv~e~l~-~---~~~--------------------------~~~~~~~~~~ 134 (245)
.+++++||++. .|... ++.|.+. + +.. ..........
T Consensus 107 ~~i~~v~q~~~-~~~~~~~~~~~l~G~tr~~~e~~~~~~~~~~~~iliDT~Gi~~~~~~v~~~~d~vl~v~d~~~~~~~~ 185 (337)
T 2qm8_A 107 TRMARLAIDRN-AFIRPSPSSGTLGGVAAKTRETMLLCEAAGFDVILVETVGVGQSETAVADLTDFFLVLMLPGAGDELQ 185 (337)
T ss_dssp GGSTTGGGCTT-EEEECCCCCSSHHHHHHHHHHHHHHHHHTTCCEEEEEECSSSSCHHHHHTTSSEEEEEECSCC-----
T ss_pred hhheeeccCcc-cccccCcccccccchHHHHHHHHHHHhcCCCCEEEEECCCCCcchhhHHhhCCEEEEEEcCCCcccHH
Confidence 67999999975 33321 1222221 0 000 0000000000
Q ss_pred HHHHHHHHHHHHcCCCCccCCC-CCCCCChHHHHHHHHHHHHhh------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhh
Q 035832 135 YLALNLQRAINWVGLDGTSLDK-DPHSLSGGYKRRLALAIQLVQ------VPDLLILDEPLAGLDWKARADVVKLLKHLK 207 (245)
Q Consensus 135 ~~~~~~~~~l~~~~l~~~~~~~-~~~~LSgGqkqrv~iAral~~------~p~llllDEPts~LD~~~~~~i~~~l~~l~ 207 (245)
.....+.+....+.++ . .|. ....+|+|++|++..|++++. .|+++. +|++|..+.+++++.|.++.
T Consensus 186 ~i~~~i~~~~~ivvlN-K-~Dl~~~~~~s~~~~~~l~~a~~l~~~~~~~~~~~vl~----~Sal~g~gi~~L~~~I~~~~ 259 (337)
T 2qm8_A 186 GIKKGIFELADMIAVN-K-ADDGDGERRASAAASEYRAALHILTPPSATWTPPVVT----ISGLHGKGLDSLWSRIEDHR 259 (337)
T ss_dssp -CCTTHHHHCSEEEEE-C-CSTTCCHHHHHHHHHHHHHHHTTBCCSBTTBCCCEEE----EBTTTTBSHHHHHHHHHHHH
T ss_pred HHHHHHhccccEEEEE-c-hhccCchhHHHHHHHHHHHHHHhccccccCCCCCEEE----EeCCCCCCHHHHHHHHHHHH
Confidence 0000111222233332 2 353 345689999999999999987 688887 99999999999999998864
|
| >1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1 | Back alignment and structure |
|---|
Probab=99.74 E-value=1.1e-22 Score=179.26 Aligned_cols=165 Identities=15% Similarity=0.101 Sum_probs=108.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC--------CCCcceEEEcCccCCCCCCCC-----------CCCCCCCcEEEE---e
Q 035832 46 SFGLIFGRSGSGKTTLLQLLAGLS--------KPTSGSINIRGYNNDGEPNNS-----------PEPLPPEKVGIV---F 103 (245)
Q Consensus 46 e~~~liG~nGsGKSTLl~~l~Gl~--------~p~~G~i~~~g~~~~~~~~~~-----------~~~~~~~~i~~v---~ 103 (245)
++++|+|+||||||||+|.|+|+. .|+.|+|.++|.++....... .....++.++++ +
T Consensus 5 ~v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~G~i~idg~~l~~~~~~~~el~~gCicc~~~~~~~~~l~~l~~~~ 84 (318)
T 1nij_A 5 AVTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEFGEVSVDDQLIGDRATQIKTLTNGCICCSRSNELEDALLDLLDNL 84 (318)
T ss_dssp EEEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSCCSCCEEEEEECTTSCEEEEETTSCEEECTTSCHHHHHHHHHHHH
T ss_pred cEEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecCcccCccHHHHhCCCCCEEEECCCceEEcccHHHHHHHHHHHhHH
Confidence 589999999999999999999997 789999999998875421100 011223457777 6
Q ss_pred cCCCCCCCcccHHHHHHhcCCCCCCchhH-H-HHH--HHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCC
Q 035832 104 QFPERYFVADNVLDEVIFGWPRQSGSIQL-K-EYL--ALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVP 179 (245)
Q Consensus 104 Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~-~-~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p 179 (245)
|++. .++..++.|+..++.+.... ... . ... ...+..++..+++.+. .++. .+||+||+||+..+++++.+|
T Consensus 85 q~~~-~~~~~~v~E~~~l~~p~~~~-~~~~~~~~~~~~~~l~~~l~~vd~~~~-~~~~-~~ls~g~~Q~~~ad~ill~k~ 160 (318)
T 1nij_A 85 DKGN-IQFDRLVIECTGMADPGPII-QTFFSHEVLCQRYLLDGVIALVDAVHA-DEQM-NQFTIAQSQVGYADRILLTKT 160 (318)
T ss_dssp HHTS-CCCSEEEEEEETTCCHHHHH-HHHHHSHHHHHHEEEEEEEEEEETTTH-HHHH-HHCHHHHHHHHTCSEEEEECT
T ss_pred hcCC-CCCCEEEEeCCCCCCHHHHH-HHHhcCccccCeEEECCEEEEEEHHHH-HHHH-hhchHHHHHHHhCCEEEEECc
Confidence 7764 34566777776654210000 000 0 000 0011122344455543 2332 379999999999999999999
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhh
Q 035832 180 DLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAAL 225 (245)
Q Consensus 180 ~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~ 225 (245)
+++ ||| +++.+.|++++.+.+|+++||+...+..+
T Consensus 161 dl~--de~---------~~l~~~l~~l~~~~~ii~~sh~~~~~~~l 195 (318)
T 1nij_A 161 DVA--GEA---------EKLHERLARINARAPVYTVTHGDIDLGLL 195 (318)
T ss_dssp TTC--SCT---------HHHHHHHHHHCSSSCEEECCSSCCCGGGG
T ss_pred ccC--CHH---------HHHHHHHHHhCCCCeEEEecccCCCHHHH
Confidence 987 999 77888888887678999999965444433
|
| >2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A* | Back alignment and structure |
|---|
Probab=99.73 E-value=9.3e-18 Score=138.51 Aligned_cols=152 Identities=14% Similarity=0.099 Sum_probs=97.9
Q ss_pred ceeeeeeE-EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCC
Q 035832 33 DILNGVSF-SLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFV 111 (245)
Q Consensus 33 ~il~~vsl-~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~ 111 (245)
+.|+.+.. .+++|++++|+||||||||||++.+++ .+..+.++ +..+. .+.
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~--~~~~~v~~------------------------i~~~~--~~~ 58 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGL--LSGKKVAY------------------------VDTEG--GFS 58 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHH--HHCSEEEE------------------------EESSC--CCC
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHH--HcCCcEEE------------------------EECCC--CCC
Confidence 45777765 789999999999999999999999999 22222222 22221 111
Q ss_pred cccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHH--HHHHHHHHHHhhC-CCEEEEeCCC
Q 035832 112 ADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGY--KRRLALAIQLVQV-PDLLILDEPL 188 (245)
Q Consensus 112 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGq--kqrv~iAral~~~-p~llllDEPt 188 (245)
...+.+..... .. .. +++++.+ .+.++|+++ +|+++.+++++.+ |+++++||||
T Consensus 59 ~~~~~~~~~~~-----~~-~~--------~~~~~~~---------~~~~~~~~~~~~~~~~~~~~l~~~~~~lliiD~~~ 115 (220)
T 2cvh_A 59 PERLVQMAETR-----GL-NP--------EEALSRF---------ILFTPSDFKEQRRVIGSLKKTVDSNFALVVVDSIT 115 (220)
T ss_dssp HHHHHHHHHTT-----TC-CH--------HHHHHHE---------EEECCTTTSHHHHHHHHHHHHCCTTEEEEEEECCC
T ss_pred HHHHHHHHHhc-----CC-Ch--------HHHhhcE---------EEEecCCHHHHHHHHHHHHHHhhcCCCEEEEcCcH
Confidence 11122211100 00 00 1112221 122344553 5788888999986 9999999999
Q ss_pred CCCCHHH--------HHHHHHHHHHhhc--CceEEEEecChh-------------HHHhhccEEEEEeCC
Q 035832 189 AGLDWKA--------RADVVKLLKHLKK--ELTILVVSHDLK-------------EMAALVDHSWRMDMG 235 (245)
Q Consensus 189 s~LD~~~--------~~~i~~~l~~l~~--~~tiii~tHd~~-------------~~~~~~d~v~~l~~G 235 (245)
+.+|+.. ..++++.|+++.+ +.|||+++|... .+...||++++|+..
T Consensus 116 ~~l~~~~~~~~~~~~~~~~~~~L~~l~~~~~~~vi~~~h~~~~~~~~~~~p~~~~~~~~~~d~vi~l~~~ 185 (220)
T 2cvh_A 116 AHYRAEENRSGLIAELSRQLQVLLWIARKHNIPVIVINQVHFDSRTEMTKPVAEQTLGYRCKDILRLDKL 185 (220)
T ss_dssp CCTTGGGGSSTTHHHHHHHHHHHHHHHHHHTCCEEEEECSSSSCTTSSCCSCCCHHHHHTSSEEEEEEEC
T ss_pred HHhhhcCchHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeEEEcCCCCccccCCCcceeecCcEEEEEEEe
Confidence 9999743 3445555777643 689999999865 567899999999754
|
| >2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25 | Back alignment and structure |
|---|
Probab=99.73 E-value=5.1e-23 Score=167.39 Aligned_cols=167 Identities=15% Similarity=0.060 Sum_probs=108.4
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCC
Q 035832 45 KSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWP 124 (245)
Q Consensus 45 Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~ 124 (245)
|++++|+||||||||||+++|++ |.+|.++++|.++... ...++++|... .....++++++.+...
T Consensus 2 g~ii~l~G~~GaGKSTl~~~L~~---~~~g~~~i~~d~~~~~----------~~~~~~~~~~~-~~~~~~~~~~l~~~~~ 67 (189)
T 2bdt_A 2 KKLYIITGPAGVGKSTTCKRLAA---QLDNSAYIEGDIINHM----------VVGGYRPPWES-DELLALTWKNITDLTV 67 (189)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHH---HSSSEEEEEHHHHHTT----------CCTTCCCGGGC-HHHHHHHHHHHHHHHH
T ss_pred CeEEEEECCCCCcHHHHHHHHhc---ccCCeEEEcccchhhh----------hccccccCccc-hhHHHHHHHHHHHHHH
Confidence 68999999999999999999997 6789999998765321 12356666541 2234567776654200
Q ss_pred CCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCC--ChHHHHHHHHHH------HHhhCCCEEEEeCCCCCCCHHHH
Q 035832 125 RQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSL--SGGYKRRLALAI------QLVQVPDLLILDEPLAGLDWKAR 196 (245)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~L--SgGqkqrv~iAr------al~~~p~llllDEPts~LD~~~~ 196 (245)
.........+++.+. ... ..+...++ |+||+|++.++. +++.+|+...+|+ +||+...
T Consensus 68 ---------~~~~~~~~~ild~~~-~~~-~~~~~~~~~~s~g~~~~~~~i~L~~~~e~l~~R~~~r~~d~---~ld~~~~ 133 (189)
T 2bdt_A 68 ---------NFLLAQNDVVLDYIA-FPD-EAEALAQTVQAKVDDVEIRFIILWTNREELLRRDALRKKDE---QMGERCL 133 (189)
T ss_dssp ---------HHHHTTCEEEEESCC-CHH-HHHHHHHHHHHHCSSEEEEEEEEECCHHHHHHHTTTSCC-------CGGGG
T ss_pred ---------HHHhcCCcEEEeecc-CHH-HHHHHHHHHHhcccCCCeEEEEEeCCHHHHHHHHHhccccc---cCCHHHH
Confidence 000000000000000 000 00111234 888888888888 8999998888884 8999988
Q ss_pred HHHHHHHHHhhc-CceEEEEecC-hhHHHhhccEEEEEeCCeEEEecc
Q 035832 197 ADVVKLLKHLKK-ELTILVVSHD-LKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 197 ~~i~~~l~~l~~-~~tiii~tHd-~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
.. ++.+..+.+ +.++|.+||. ++.+..+||+|+ ++|+++.++.
T Consensus 134 ~~-~~~~~~~~~~~~~ii~tsh~~~~~~e~~~~~i~--~~g~~~~~~~ 178 (189)
T 2bdt_A 134 EL-VEEFESKGIDERYFYNTSHLQPTNLNDIVKNLK--TNPRFIFCMA 178 (189)
T ss_dssp HH-HHHHHHTTCCTTSEEECSSSCGGGHHHHHHHHH--HCGGGSCC--
T ss_pred HH-HHHHhhcCCCccEEEeCCCCChhhHHHHHHHHh--hCCcEEEeec
Confidence 88 888888754 4799999999 999999999998 9999887653
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=99.72 E-value=3e-17 Score=147.32 Aligned_cols=77 Identities=25% Similarity=0.394 Sum_probs=69.8
Q ss_pred CCCCCCChHHHHHH------HHHHHHhhC-CCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccE
Q 035832 156 KDPHSLSGGYKRRL------ALAIQLVQV-PDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDH 228 (245)
Q Consensus 156 ~~~~~LSgGqkqrv------~iAral~~~-p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~ 228 (245)
+++..|||||+||+ ++|++++.+ |++|||||||++||+..+..+.+.|.++.++.+||++||+++ +..+||+
T Consensus 276 ~~~~~lS~G~~~~~~lal~la~a~~l~~~~~~~lllDEp~~~LD~~~~~~l~~~l~~~~~~~~vi~~th~~~-~~~~~d~ 354 (371)
T 3auy_A 276 LTIDNLSGGEQIAVALSLRLAIANALIGNRVECIILDEPTVYLDENRRAKLAEIFRKVKSIPQMIIITHHRE-LEDVADV 354 (371)
T ss_dssp ECGGGSCHHHHHHHHHHHHHHHHHHHHSSCCSEEEEESTTTTCCHHHHHHHHHHHHHCCSCSEEEEEESCGG-GGGGCSE
T ss_pred cchHhcCHHHHHHHHHHHHHHHHHHHhcCCCCeEEEeCCCCcCCHHHHHHHHHHHHHhccCCeEEEEEChHH-HHhhCCE
Confidence 56689999999988 567899999 999999999999999999999999999865578999999987 5789999
Q ss_pred EEEEe
Q 035832 229 SWRMD 233 (245)
Q Consensus 229 v~~l~ 233 (245)
+++|+
T Consensus 355 ~~~l~ 359 (371)
T 3auy_A 355 IINVK 359 (371)
T ss_dssp EEEEE
T ss_pred EEEEE
Confidence 99997
|
| >2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V | Back alignment and structure |
|---|
Probab=99.71 E-value=6.8e-18 Score=150.55 Aligned_cols=139 Identities=16% Similarity=0.136 Sum_probs=95.8
Q ss_pred eeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC-CCcceEEEc-CccCCCCCCCCCCCCCCCcEEEEecCCCCCCC
Q 035832 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK-PTSGSINIR-GYNNDGEPNNSPEPLPPEKVGIVFQFPERYFV 111 (245)
Q Consensus 34 il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~-p~~G~i~~~-g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~ 111 (245)
-++++++.+ +|++++|+||||||||||+|+|+|+.+ |++|+|.++ |..... .....+++++|++. ++.
T Consensus 205 gl~~L~~~~-~G~~~~lvG~sG~GKSTLln~L~g~~~~~~~G~I~~~~G~g~~t--------t~~~~i~~v~q~~~-l~d 274 (358)
T 2rcn_A 205 GLKPLEEAL-TGRISIFAGQSGVGKSSLLNALLGLQNEILTNDVSNVSGLGQHT--------TTAARLYHFPHGGD-VID 274 (358)
T ss_dssp THHHHHHHH-TTSEEEEECCTTSSHHHHHHHHHCCSSCCCCC---------------------CCCEEEECTTSCE-EEE
T ss_pred CHHHHHHhc-CCCEEEEECCCCccHHHHHHHHhccccccccCCccccCCCCccc--------eEEEEEEEECCCCE-ecC
Confidence 467777754 799999999999999999999999999 999999986 644210 12467999999874 555
Q ss_pred cccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCC
Q 035832 112 ADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGL 191 (245)
Q Consensus 112 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~L 191 (245)
..++.++ ++.. . ........+.++++.+++..+ .++++.+|| ||+||++||+++ +
T Consensus 275 tpgv~e~---~l~~--l---~~~e~~~~~~e~l~~~gl~~f-~~~~~~~lS-G~~~r~ala~gl---------------i 329 (358)
T 2rcn_A 275 SPGVREF---GLWH--L---EPEQITQGFVEFHDYLGHCKY-RDCKHDADP-GCAIREAVENGA---------------I 329 (358)
T ss_dssp CHHHHTC---CCCC--C---CHHHHHHTSGGGGGGTTCSSS-TTCCSSSCT-TCHHHHHHHHTS---------------S
T ss_pred cccHHHh---hhcC--C---CHHHHHHHHHHHHHHcCCchh-cCCCcccCC-HHHHHHHHHhcC---------------C
Confidence 6677773 2111 1 122334556788899999876 699999999 999999999875 3
Q ss_pred CHHHHHHHHHHHHHhh
Q 035832 192 DWKARADVVKLLKHLK 207 (245)
Q Consensus 192 D~~~~~~i~~~l~~l~ 207 (245)
++.-.+...+++.++.
T Consensus 330 ~~~R~~~y~~l~~e~~ 345 (358)
T 2rcn_A 330 AETRFENYHRILESMA 345 (358)
T ss_dssp CHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHH
Confidence 4555555555666654
|
| >2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A | Back alignment and structure |
|---|
Probab=99.70 E-value=6.8e-21 Score=161.41 Aligned_cols=144 Identities=21% Similarity=0.171 Sum_probs=99.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHh---CCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHH
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLA---GLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVI 120 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~---Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~ 120 (245)
++++++|+||||||||||+++|+ |+..|++|+|.++|.+... .....+++++|++. .++..++.+++.
T Consensus 26 ~~~~i~l~G~~GsGKSTl~k~La~~lg~~~~~~G~i~~~~~~~~~--------~~~~~i~~~~~~~~-~~~~~~v~~~l~ 96 (246)
T 2bbw_A 26 KLLRAVILGPPGSGKGTVCQRIAQNFGLQHLSSGHFLRENIKAST--------EVGEMAKQYIEKSL-LVPDHVITRLMM 96 (246)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHHCCCCEEHHHHHHHHHHTTC--------HHHHHHHHHHHTTC-CCCHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEecHHHHHHHHHhcCC--------hHHHHHHHHHHcCC-CCCHHHHHHHHH
Confidence 47999999999999999999999 9999999999887754210 01234556677764 566778888886
Q ss_pred hcCCC-------CCCchhHHHHHHHHHHHHHH--HcC------------CCCccCCCCCCCCChHHHHHHHHHHHH-hhC
Q 035832 121 FGWPR-------QSGSIQLKEYLALNLQRAIN--WVG------------LDGTSLDKDPHSLSGGYKRRLALAIQL-VQV 178 (245)
Q Consensus 121 ~~~~~-------~~~~~~~~~~~~~~~~~~l~--~~~------------l~~~~~~~~~~~LSgGqkqrv~iAral-~~~ 178 (245)
..+.. ..+...... .+..+.. .++ +... .++++.+||| |+ +|+ +.+
T Consensus 97 ~~l~~~~~~~~il~g~~~~~~----~~~~l~~~~~~~~vi~L~~~~~~~l~r~-~~r~~~~lSg----rv---~al~~~~ 164 (246)
T 2bbw_A 97 SELENRRGQHWLLDGFPRTLG----QAEALDKICEVDLVISLNIPFETLKDRL-SRRWIHPPSG----RV---YNLDFNP 164 (246)
T ss_dssp HHHHTCTTSCEEEESCCCSHH----HHHHHHTTCCCCEEEEEECCHHHHHHHH-HTEEEETTTT----EE---EETTTSC
T ss_pred HHHHhcCCCeEEEECCCCCHH----HHHHHHhhcCCCEEEEEECCHHHHHHHH-HcCCCcCCCC----Cc---cccccCC
Confidence 52100 000000011 1112211 122 2222 4677889999 66 788 999
Q ss_pred CCEEEEe----CCCCCCCHHHHHHHHHHHHHhhc
Q 035832 179 PDLLILD----EPLAGLDWKARADVVKLLKHLKK 208 (245)
Q Consensus 179 p~llllD----EPts~LD~~~~~~i~~~l~~l~~ 208 (245)
|++++|| |||++||+.+.+.+.+.++.+.+
T Consensus 165 P~~lllD~~~~EP~~~ld~~~~~~i~~~l~~~~~ 198 (246)
T 2bbw_A 165 PHVHGIDDVTGEPLVQQEDDKPEAVAARLRQYKD 198 (246)
T ss_dssp CSSTTBCTTTCCBCBCCGGGSHHHHHHHHHHHHH
T ss_pred CcccccccccccccccCCCCcHHHHHHHHHHHHH
Confidence 9999999 99999999999999999988753
|
| >3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B* | Back alignment and structure |
|---|
Probab=99.70 E-value=1.9e-19 Score=159.27 Aligned_cols=170 Identities=14% Similarity=0.008 Sum_probs=111.2
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC--CCCcEEEEecCCCCCCCcccHHHH
Q 035832 41 SLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL--PPEKVGIVFQFPERYFVADNVLDE 118 (245)
Q Consensus 41 ~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~--~~~~i~~v~Q~~~~~~~~~tv~e~ 118 (245)
..++|++++|+||||||||||++.|+|+++|++|+|.+.|.++........... .+..+.+++|... .++..++++|
T Consensus 125 ~~~~g~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g~D~~r~~a~eql~~~~~~~gv~~v~q~~~-~~p~~~v~e~ 203 (328)
T 3e70_C 125 KAEKPYVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAASDTFRAGAIEQLEEHAKRIGVKVIKHSYG-ADPAAVAYDA 203 (328)
T ss_dssp SSCSSEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECCSSTTHHHHHHHHHHHTTCEEECCCTT-CCHHHHHHHH
T ss_pred cCCCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEeecccccchHHHHHHHHHHcCceEEecccc-CCHHHHHHHH
Confidence 347899999999999999999999999999999999999988743211000000 0124669999874 5677899999
Q ss_pred HHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHH
Q 035832 119 VIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARAD 198 (245)
Q Consensus 119 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~ 198 (245)
+.++...... . -+++..|+.+. ....+.+| -.++|++..++++++||.++. ..
T Consensus 204 l~~~~~~~~d----------~--vliDtaG~~~~-~~~l~~eL-------~~i~ral~~de~llvLDa~t~-------~~ 256 (328)
T 3e70_C 204 IQHAKARGID----------V--VLIDTAGRSET-NRNLMDEM-------KKIARVTKPNLVIFVGDALAG-------NA 256 (328)
T ss_dssp HHHHHHHTCS----------E--EEEEECCSCCT-TTCHHHHH-------HHHHHHHCCSEEEEEEEGGGT-------TH
T ss_pred HHHHHhccch----------h--hHHhhccchhH-HHHHHHHH-------HHHHHHhcCCCCEEEEecHHH-------HH
Confidence 9765110000 0 01222343321 12233333 348999998888888886654 35
Q ss_pred HHHHHHHhhc--CceEEEEecChh---------HHHhhccEEEEEeCCeEE
Q 035832 199 VVKLLKHLKK--ELTILVVSHDLK---------EMAALVDHSWRMDMGGFL 238 (245)
Q Consensus 199 i~~~l~~l~~--~~tiii~tHd~~---------~~~~~~d~v~~l~~G~i~ 238 (245)
+.+.++.+.+ +.|+|++||.-. .+....-.|.++..|+.+
T Consensus 257 ~~~~~~~~~~~~~it~iilTKlD~~a~~G~~l~~~~~~~~pi~~i~~Ge~v 307 (328)
T 3e70_C 257 IVEQARQFNEAVKIDGIILTKLDADARGGAALSISYVIDAPILFVGVGQGY 307 (328)
T ss_dssp HHHHHHHHHHHSCCCEEEEECGGGCSCCHHHHHHHHHHTCCEEEEECSSST
T ss_pred HHHHHHHHHHhcCCCEEEEeCcCCccchhHHHHHHHHHCCCEEEEeCCCCc
Confidence 5555666652 589999999532 233445678888888765
|
| >1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A | Back alignment and structure |
|---|
Probab=99.69 E-value=3.4e-20 Score=147.70 Aligned_cols=89 Identities=15% Similarity=-0.007 Sum_probs=71.4
Q ss_pred EEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCc
Q 035832 19 EVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEK 98 (245)
Q Consensus 19 ~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ 98 (245)
+.+++++.|++ +.+++++||++++|++++|+||||||||||+|+|+|++ |++|+|.++|.++.... .. .+
T Consensus 9 ~~~~~~~~~g~--~~~l~~vsl~i~~Ge~v~L~G~nGaGKTTLlr~l~g~l-~~~G~V~~~g~~i~~~~------~~-~~ 78 (158)
T 1htw_A 9 PDEFSMLRFGK--KFAEILLKLHTEKAIMVYLNGDLGAGKTTLTRGMLQGI-GHQGNVKSPTYTLVEEY------NI-AG 78 (158)
T ss_dssp CSHHHHHHHHH--HHHHHHHHHCCSSCEEEEEECSTTSSHHHHHHHHHHHT-TCCSCCCCCTTTCEEEE------EE-TT
T ss_pred CCHHHHHHHHH--HHHHhccccccCCCCEEEEECCCCCCHHHHHHHHHHhC-CCCCeEEECCEeeeeec------cC-CC
Confidence 34456777853 56899999999999999999999999999999999999 99999999988763210 01 12
Q ss_pred EEEEecCCCCCCCcccHHHHHHh
Q 035832 99 VGIVFQFPERYFVADNVLDEVIF 121 (245)
Q Consensus 99 i~~v~Q~~~~~~~~~tv~e~l~~ 121 (245)
++||++. ++ .+|+.||+.+
T Consensus 79 --~~~q~~~-l~-~ltv~e~l~~ 97 (158)
T 1htw_A 79 --KMIYHFD-LY-RLADPEELEF 97 (158)
T ss_dssp --EEEEEEE-CT-TCSCTTHHHH
T ss_pred --cceeccc-cc-cCCcHHHHHH
Confidence 7999874 55 7899999854
|
| >1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11 | Back alignment and structure |
|---|
Probab=99.68 E-value=3.2e-17 Score=137.25 Aligned_cols=146 Identities=17% Similarity=0.228 Sum_probs=80.9
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhC--CCCC-----CcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcc
Q 035832 41 SLPEKSFGLIFGRSGSGKTTLLQLLAG--LSKP-----TSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVAD 113 (245)
Q Consensus 41 ~i~~Ge~~~liG~nGsGKSTLl~~l~G--l~~p-----~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ 113 (245)
-+++|++++|+||||||||||++.|++ +.+| ..|.+++++.+. +...
T Consensus 20 gi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~~--------------------------~~~~ 73 (243)
T 1n0w_A 20 GIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEGT--------------------------FRPE 73 (243)
T ss_dssp SEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSC--------------------------CCHH
T ss_pred CCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCCC--------------------------cCHH
Confidence 478999999999999999999999999 5665 455666654321 0000
Q ss_pred cHHHHHH-hcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHH-HHHHHHHh--hCCCEEEEeCCCC
Q 035832 114 NVLDEVI-FGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRR-LALAIQLV--QVPDLLILDEPLA 189 (245)
Q Consensus 114 tv~e~l~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqr-v~iAral~--~~p~llllDEPts 189 (245)
.+.+... +++ . . +++++.+.+ ....+..+... +.-+..++ .+|+++++|||++
T Consensus 74 ~~~~~~~~~g~-----~--~--------~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~~~lliiD~~~~ 130 (243)
T 1n0w_A 74 RLLAVAERYGL-----S--G--------SDVLDNVAY--------ARAFNTDHQTQLLYQASAMMVESRYALLIVDSATA 130 (243)
T ss_dssp HHHHHHHHTTC-----C--H--------HHHHHTEEE--------EECCSHHHHHHHHHHHHHHHHHSCEEEEEEETSSG
T ss_pred HHHHHHHHcCC-----C--H--------HHHhhCeEE--------EecCCHHHHHHHHHHHHHHHhcCCceEEEEeCchH
Confidence 0111000 110 0 0 001111100 11234443322 22222333 5899999999999
Q ss_pred CCCHH-------H-----HHHHHHHHHHhh-c-CceEEEEecChhHHHh-------------------hccEEEEEeCC
Q 035832 190 GLDWK-------A-----RADVVKLLKHLK-K-ELTILVVSHDLKEMAA-------------------LVDHSWRMDMG 235 (245)
Q Consensus 190 ~LD~~-------~-----~~~i~~~l~~l~-~-~~tiii~tHd~~~~~~-------------------~~d~v~~l~~G 235 (245)
.+|+. . ...++..|.++. + ++|||+++|....... +||.+++|+.+
T Consensus 131 ~~~~~~~~~~~~~~r~~~~~~~~~~l~~~~~~~~~tvi~~~h~~~~~~~~~~~~~~~~~~~g~~~~~~~~d~vi~l~~~ 209 (243)
T 1n0w_A 131 LYRTDYSGRGELSARQMHLARFLRMLLRLADEFGVAVVITNQVVAQVDGAAMFAADPKKPIGGNIIAHASTTRLYLRKG 209 (243)
T ss_dssp GGC-------CHHHHHHHHHHHHHHHHHHHHHHCCEEEEEC-------------------------CCTTCEEEEEEEC
T ss_pred HHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHcCCEEEEEeeeeecCCCccccCCCcccCCccChhhhcCcEEEEEEEc
Confidence 99985 3 344555555554 2 6899999997665433 89999999865
|
| >1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A* | Back alignment and structure |
|---|
Probab=99.68 E-value=2.5e-21 Score=176.35 Aligned_cols=157 Identities=15% Similarity=0.072 Sum_probs=101.9
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
++++++++.|+ ...+|+++ +. .+|++++|+|||||||||||++|+|+++|++|+|.+.+.++..............
T Consensus 144 ~~l~~Lg~~~~--~~~~L~~l-~~-~~ggii~I~GpnGSGKTTlL~allg~l~~~~g~I~~~ed~ie~~~~~~~q~~v~~ 219 (418)
T 1p9r_A 144 LDLHSLGMTAH--NHDNFRRL-IK-RPHGIILVTGPTGSGKSTTLYAGLQELNSSERNILTVEDPIEFDIDGIGQTQVNP 219 (418)
T ss_dssp CCGGGSCCCHH--HHHHHHHH-HT-SSSEEEEEECSTTSCHHHHHHHHHHHHCCTTSCEEEEESSCCSCCSSSEEEECBG
T ss_pred CCHHHcCCCHH--HHHHHHHH-HH-hcCCeEEEECCCCCCHHHHHHHHHhhcCCCCCEEEEecccchhccCCcceEEEcc
Confidence 45555655553 23467777 53 7999999999999999999999999999999999999877632111000011234
Q ss_pred cEEEEe---------cCCCCCC-Cc----ccHHHHHHhcCCCCC-CchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCC
Q 035832 98 KVGIVF---------QFPERYF-VA----DNVLDEVIFGWPRQS-GSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLS 162 (245)
Q Consensus 98 ~i~~v~---------Q~~~~~~-~~----~tv~e~l~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LS 162 (245)
++++.| |+|...+ .. .|+.+++.++..... .......... .+.+.+..+++... ..+.+||
T Consensus 220 ~~g~~f~~~lr~~Lrq~pd~i~vgEiRd~et~~~~l~a~~tGhlv~~tlh~~~~~-~~i~rL~~lgl~~~---~~~~~LS 295 (418)
T 1p9r_A 220 RVDMTFARGLRAILRQDPDVVMVGEIRDLETAQIAVQASLTGHLVMSTLHTNTAV-GAVTRLRDMGIEPF---LISSSLL 295 (418)
T ss_dssp GGTBCHHHHHHHHGGGCCSEEEESCCCSHHHHHHHHHHHHTTCEEEEEECCSSSH-HHHHHHHHHTCCHH---HHHHHEE
T ss_pred ccCcCHHHHHHHHhccCCCeEEEcCcCCHHHHHHHHHHHHhCCCcccccchhhHH-HHHHHHHHcCCcHH---HHHHHHH
Confidence 566655 9886321 22 588888876411000 0000000001 12234667788753 2678999
Q ss_pred hHHHHHHHHHHHHhhCCCEEEE
Q 035832 163 GGYKRRLALAIQLVQVPDLLIL 184 (245)
Q Consensus 163 gGqkqrv~iAral~~~p~llll 184 (245)
|||+|| |||+|+.+|++..-
T Consensus 296 gg~~QR--LaraL~~~p~~~~~ 315 (418)
T 1p9r_A 296 GVLAQR--LVRTLCPDCKEPYE 315 (418)
T ss_dssp EEEEEE--EEEEECTTTCEEEE
T ss_pred HHHHHH--hhhhhcCCCCccCC
Confidence 999999 99999999999763
|
| >2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A | Back alignment and structure |
|---|
Probab=99.67 E-value=1.6e-18 Score=159.92 Aligned_cols=179 Identities=15% Similarity=0.111 Sum_probs=111.8
Q ss_pred eeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCC-CCCCCC-CCCcEEEEecCCCCCCCc
Q 035832 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPN-NSPEPL-PPEKVGIVFQFPERYFVA 112 (245)
Q Consensus 35 l~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~-~~~~~~-~~~~i~~v~Q~~~~~~~~ 112 (245)
-+++||++++|++++|+||||||||||+++|+|+++|++|+|.+.|.+...... .....+ .+++++|++|++. .++.
T Consensus 283 ~~~Isl~i~~GeVI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~g~D~~r~aa~eQL~~~~~r~~I~vV~Q~~~-~~p~ 361 (503)
T 2yhs_A 283 DEPLNVEGKAPFVILMVGVNGVGKTTTIGKLARQFEQQGKSVMLAAGDTFRAAAVEQLQVWGQRNNIPVIAQHTG-ADSA 361 (503)
T ss_dssp BCCCCCCSCTTEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECCCTTCHHHHHHHHHHHHHHTCCEECCSTT-CCHH
T ss_pred CCCceeeccCCeEEEEECCCcccHHHHHHHHHHHhhhcCCeEEEecCcccchhhHHHHHHHHHhcCceEEecccC-cCHH
Confidence 478999999999999999999999999999999999999999998776532100 000000 1356999999874 5567
Q ss_pred ccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh-hCC-CEEEEeCCCCC
Q 035832 113 DNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV-QVP-DLLILDEPLAG 190 (245)
Q Consensus 113 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~-~~p-~llllDEPts~ 190 (245)
.++++|+.++...... .+ +++..|..+. .. .|-.-.+|++.+++++. ..| .+||...|++|
T Consensus 362 ~tV~e~l~~a~~~~~D----------vV--LIDTaGrl~~-~~----~lm~EL~kiv~iar~l~~~~P~evLLvLDattG 424 (503)
T 2yhs_A 362 SVIFDAIQAAKARNID----------VL--IADTAGRLQN-KS----HLMEELKKIVRVMKKLDVEAPHEVMLTIDASTG 424 (503)
T ss_dssp HHHHHHHHHHHHTTCS----------EE--EECCCCSCCC-HH----HHHHHHHHHHHHHHTTCTTCSSEEEEEEEGGGT
T ss_pred HHHHHHHHHHHhcCCC----------EE--EEeCCCccch-hh----hHHHHHHHHHHHHHHhccCCCCeeEEEecCccc
Confidence 8999999875211000 00 0111222111 01 11112347888888764 456 35555558888
Q ss_pred CCHHHHHHHHHHHHHhhc--CceEEEEecChhH----------HHhhccEEEEEeCCeEE
Q 035832 191 LDWKARADVVKLLKHLKK--ELTILVVSHDLKE----------MAALVDHSWRMDMGGFL 238 (245)
Q Consensus 191 LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~----------~~~~~d~v~~l~~G~i~ 238 (245)
.|.. +.++.+.+ +.|.+++|| ++. +..+.-.|.++..|+-+
T Consensus 425 q~al------~~ak~f~~~~~itgvIlTK-LD~takgG~~lsi~~~~~~PI~fig~Ge~v 477 (503)
T 2yhs_A 425 QNAV------SQAKLFHEAVGLTGITLTK-LDGTAKGGVIFSVADQFGIPIRYIGVGERI 477 (503)
T ss_dssp HHHH------HHHHHHHHHTCCSEEEEEC-GGGCSCCTHHHHHHHHHCCCEEEEECSSSG
T ss_pred HHHH------HHHHHHHhhcCCCEEEEEc-CCCcccccHHHHHHHHHCCCEEEEecCCCh
Confidence 6544 33344432 578999999 443 22334466777666543
|
| >1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=99.64 E-value=1.6e-16 Score=140.46 Aligned_cols=139 Identities=17% Similarity=0.163 Sum_probs=77.9
Q ss_pred CEEEEECCCCCcHHHHHHHHhC-CCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCC
Q 035832 46 SFGLIFGRSGSGKTTLLQLLAG-LSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWP 124 (245)
Q Consensus 46 e~~~liG~nGsGKSTLl~~l~G-l~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~ 124 (245)
..+.|.||||+|||||++++++ ++.|+.|.+.++|.+..... ..+..+++++|.+. . .... .
T Consensus 37 ~~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~------~~~~~~~~~~~~~~-~--~~~~--------~ 99 (354)
T 1sxj_E 37 PHLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTAS------NRKLELNVVSSPYH-L--EITP--------S 99 (354)
T ss_dssp CCEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------------------CCEECSSE-E--EECC--------C
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccc------cccceeeeecccce-E--EecH--------h
Confidence 3489999999999999999999 88999999999987653211 11456888888752 1 1100 0
Q ss_pred CCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 035832 125 RQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLK 204 (245)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~ 204 (245)
. .... .....++.+.++.+..++.. .. +||| +..+|+++|+|||++ ||+..+..+++.+.
T Consensus 100 ~-~~~~-~~~~~~~~i~~~~~~~~~~~-----~~-~ls~-----------l~~~~~vlilDE~~~-L~~~~~~~L~~~le 159 (354)
T 1sxj_E 100 D-MGNN-DRIVIQELLKEVAQMEQVDF-----QD-SKDG-----------LAHRYKCVIINEANS-LTKDAQAALRRTME 159 (354)
T ss_dssp -----C-CHHHHHHHHHHHTTTTC-----------------------------CCEEEEEECTTS-SCHHHHHHHHHHHH
T ss_pred h-cCCc-chHHHHHHHHHHHHhccccc-----cc-cccc-----------cCCCCeEEEEeCccc-cCHHHHHHHHHHHH
Confidence 0 0000 01111222222222223322 12 5676 788999999999999 99999999999999
Q ss_pred HhhcCceEEEEecChhH
Q 035832 205 HLKKELTILVVSHDLKE 221 (245)
Q Consensus 205 ~l~~~~tiii~tHd~~~ 221 (245)
+...+.++|++||+++.
T Consensus 160 ~~~~~~~~Il~t~~~~~ 176 (354)
T 1sxj_E 160 KYSKNIRLIMVCDSMSP 176 (354)
T ss_dssp HSTTTEEEEEEESCSCS
T ss_pred hhcCCCEEEEEeCCHHH
Confidence 87767899999999753
|
| >2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1 | Back alignment and structure |
|---|
Probab=99.64 E-value=3.7e-19 Score=165.86 Aligned_cols=176 Identities=14% Similarity=0.127 Sum_probs=111.0
Q ss_pred ceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCc
Q 035832 33 DILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVA 112 (245)
Q Consensus 33 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~ 112 (245)
.++++++|.+++|++++|+||||||||||+++|+|+++|++|.|+++|....... ....+++..|... ....
T Consensus 248 ~~l~~l~~~v~~g~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~-------~~~~v~~~~r~~~-~~~~ 319 (511)
T 2oap_1 248 GVLAYLWLAIEHKFSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLY-------HENWIAEVTRTGM-GEGE 319 (511)
T ss_dssp HHHHHHHHHHHTTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCC-------CSSEEEEECBCCS-SSCC
T ss_pred HHHHHHHHHHhCCCEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCC-------CCCeEEEEeeccc-ccCC
Confidence 4788999999999999999999999999999999999999999999876421110 1234666665532 1112
Q ss_pred ccHHHHHHhcCCC--------CCCchhHHHHHH--------------HHHHHHHHHcCC-----CCc---cCC---CCCC
Q 035832 113 DNVLDEVIFGWPR--------QSGSIQLKEYLA--------------LNLQRAINWVGL-----DGT---SLD---KDPH 159 (245)
Q Consensus 113 ~tv~e~l~~~~~~--------~~~~~~~~~~~~--------------~~~~~~l~~~~l-----~~~---~~~---~~~~ 159 (245)
.+..+.+...+.. ............ ..+.++++++.. ... .++ ....
T Consensus 320 ~~~~~~l~~~LR~~PD~iivgEir~~E~~~~l~a~~tGh~~~sT~Ha~~~~~~l~Rl~~~~~~v~~~l~~~l~~vi~~~~ 399 (511)
T 2oap_1 320 IDMYDLLRAALRQRPDYIIVGEVRGREAQTLFQAMSTGHASYSTLHAGDINQMVYRLESEPLKVPRSMLQFLDIALVQTM 399 (511)
T ss_dssp BCHHHHHHTTGGGCCSEEEESCCCSTHHHHHHHHHHTTCEEEEEEECSSHHHHHHHHHSTTTCCCGGGGGGCCEEEEEEE
T ss_pred cCHHHHHHHhhccCCCeEEeCCcCHHHHHHHHHhhcCCCCcccccccCCHHHHHHHHHhcccccHHHHHhhccEEEEEEE
Confidence 3444444322100 000000000000 012233333322 111 011 2334
Q ss_pred CCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEE--EecChhHHHhhccE
Q 035832 160 SLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILV--VSHDLKEMAALVDH 228 (245)
Q Consensus 160 ~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii--~tHd~~~~~~~~d~ 228 (245)
.+|+||+||+++|. + | |+|||+.....+++.+.++.. +.|+++ +||+++++...|+.
T Consensus 400 ~~s~G~~~R~~~ai----------~-E-~~GlDp~~~~~~~~~l~~~~~~~~tii~~~~sH~l~ei~~~~g~ 459 (511)
T 2oap_1 400 WVRGNTRLRRTKEV----------N-E-ILGIDPVDKNLLVNQFVKWDPKEDKHIEVSMPKKLEKMADFLGV 459 (511)
T ss_dssp EESSSCEEEEEEEE----------E-E-EEECCSSSSCCEEEEEEEEETTTTEEEECSCCTHHHHHHHHHTS
T ss_pred EEeCCCceEEEEEE----------E-E-EcCcccCCCeEEEEEeEEEcccCCEEEEcccHHHHHHHHHHcCC
Confidence 68999999987752 1 7 999999988888887777754 578875 99999999888753
|
| >3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A* | Back alignment and structure |
|---|
Probab=99.62 E-value=2.7e-17 Score=132.47 Aligned_cols=112 Identities=15% Similarity=0.041 Sum_probs=75.6
Q ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHH
Q 035832 39 SFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDE 118 (245)
Q Consensus 39 sl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~ 118 (245)
+|++++|+.++|+||||||||||+++|++.+.|.+|.. +.| .+..+.
T Consensus 32 ~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~----------------------~~~-----------~~~~~~ 78 (180)
T 3ec2_A 32 NFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIR----------------------GYF-----------FDTKDL 78 (180)
T ss_dssp SCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCC----------------------CCE-----------EEHHHH
T ss_pred hccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCe----------------------EEE-----------EEHHHH
Confidence 56778899999999999999999999999886654411 001 111111
Q ss_pred HHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHH
Q 035832 119 VIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLA-GLDWKARA 197 (245)
Q Consensus 119 l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts-~LD~~~~~ 197 (245)
+.. +......-. .. -+...+.+|++|+||||++ ++|+..+.
T Consensus 79 ~~~------------------~~~~~~~~~-----~~---------------~~~~~~~~~~llilDE~~~~~~~~~~~~ 120 (180)
T 3ec2_A 79 IFR------------------LKHLMDEGK-----DT---------------KFLKTVLNSPVLVLDDLGSERLSDWQRE 120 (180)
T ss_dssp HHH------------------HHHHHHHTC-----CS---------------HHHHHHHTCSEEEEETCSSSCCCHHHHH
T ss_pred HHH------------------HHHHhcCch-----HH---------------HHHHHhcCCCEEEEeCCCCCcCCHHHHH
Confidence 110 001111000 00 1122345999999999985 99999999
Q ss_pred HHHHHHHHhh-cCceEEEEecChhH
Q 035832 198 DVVKLLKHLK-KELTILVVSHDLKE 221 (245)
Q Consensus 198 ~i~~~l~~l~-~~~tiii~tHd~~~ 221 (245)
.+.+++.... +++++|++||....
T Consensus 121 ~l~~ll~~~~~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 121 LISYIITYRYNNLKSTIITTNYSLQ 145 (180)
T ss_dssp HHHHHHHHHHHTTCEEEEECCCCSC
T ss_pred HHHHHHHHHHHcCCCEEEEcCCChh
Confidence 9999998875 56899999997643
|
| >2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.3e-18 Score=150.58 Aligned_cols=127 Identities=14% Similarity=0.057 Sum_probs=84.8
Q ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEE---cCccCCCCCCCCCCCCCCCcEEEEecCCCCC----CCc
Q 035832 40 FSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINI---RGYNNDGEPNNSPEPLPPEKVGIVFQFPERY----FVA 112 (245)
Q Consensus 40 l~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~---~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~----~~~ 112 (245)
+++.+|++++|+||||||||||+|+|+ +.+|++|+|.+ +|+++..... ......+||++|.|... ++.
T Consensus 160 ~~~l~G~i~~l~G~sG~GKSTLln~l~-~~~~~~G~i~~~~~~G~~~t~~~~----~~~~~~~g~v~d~pg~~~~~l~~~ 234 (302)
T 2yv5_A 160 VDYLEGFICILAGPSGVGKSSILSRLT-GEELRTQEVSEKTERGRHTTTGVR----LIPFGKGSFVGDTPGFSKVEATMF 234 (302)
T ss_dssp HHHTTTCEEEEECSTTSSHHHHHHHHH-SCCCCCSCC---------CCCCEE----EEEETTTEEEESSCCCSSCCGGGT
T ss_pred HhhccCcEEEEECCCCCCHHHHHHHHH-HhhCcccccccccCCCCCceeeEE----EEEcCCCcEEEECcCcCcCccccc
Confidence 345679999999999999999999999 99999999999 8877643211 01113589999998532 245
Q ss_pred ccHHHHHHhcCCC-------CCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 113 DNVLDEVIFGWPR-------QSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 113 ~tv~e~l~~~~~~-------~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
+|+ +|+...++. ..... ...+...++.++++.++|.+...++++..|||.++|++.|||
T Consensus 235 lt~-e~l~~~f~~~~~~~c~~~~~~-~~~e~~~~v~~~l~~~~L~~~~~~~~~~~ls~~~~R~~~~~~ 300 (302)
T 2yv5_A 235 VKP-REVRNYFREFLRYQCKYPDCT-HTNEPGCAVKEAVKNGEISCERYKSYLKIIKVYLEEIKELCR 300 (302)
T ss_dssp SCG-GGGGGGCGGGHHHHHHSTTCC-SSSCTTCHHHHHHHTTSSCHHHHHHHHHHTTCCCTTHHHHSS
T ss_pred CCH-HHHHHHHHHHHHccCCCCCCC-CCCCCCCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhc
Confidence 788 888322210 00000 001123457889999999852368899999999999999986
|
| >1udx_A The GTP-binding protein OBG; TGS domain, riken structural genomics/proteomics initiative, RSGI, structural genomics; 2.07A {Thermus thermophilus} SCOP: b.117.1.1 c.37.1.8 d.242.1.1 | Back alignment and structure |
|---|
Probab=99.59 E-value=4.7e-17 Score=148.07 Aligned_cols=160 Identities=20% Similarity=0.153 Sum_probs=97.1
Q ss_pred eeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCccc
Q 035832 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADN 114 (245)
Q Consensus 35 l~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~t 114 (245)
-++++|+++.|+.++|+|+||||||||+++|+|..+ .+.+.+... ....+|+++++.. ...+
T Consensus 147 ~~~i~lelk~g~~VgLVG~~gAGKSTLL~~Lsg~~~------~i~~~~ftT---------l~p~~G~V~~~~~---~~~~ 208 (416)
T 1udx_A 147 KRRLRLELMLIADVGLVGYPNAGKSSLLAAMTRAHP------KIAPYPFTT---------LSPNLGVVEVSEE---ERFT 208 (416)
T ss_dssp EEEEEEEECCSCSEEEECCGGGCHHHHHHHHCSSCC------EECCCTTCS---------SCCEEEEEECSSS---CEEE
T ss_pred EeeeeeEEcCCCEEEEECCCCCcHHHHHHHHHcCCc------cccCcccce---------ecceeeEEEecCc---ceEE
Confidence 479999999999999999999999999999999853 333333211 1235777776531 1112
Q ss_pred HHHHHHhcC--CCCCCchhHHHHH--HHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 035832 115 VLDEVIFGW--PRQSGSIQLKEYL--ALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAG 190 (245)
Q Consensus 115 v~e~l~~~~--~~~~~~~~~~~~~--~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~ 190 (245)
+.|..-+.. ...... . .... .+++..++..+++. ++++.+||+||+|++.+|++|+..|.++++ +.
T Consensus 209 l~DtpGli~~a~~~~~L-~-~~fl~~~era~~lL~vvDls----~~~~~~ls~g~~el~~la~aL~~~P~ILVl----NK 278 (416)
T 1udx_A 209 LADIPGIIEGASEGKGL-G-LEFLRHIARTRVLLYVLDAA----DEPLKTLETLRKEVGAYDPALLRRPSLVAL----NK 278 (416)
T ss_dssp EEECCCCCCCGGGSCCS-C-HHHHHHHTSSSEEEEEEETT----SCHHHHHHHHHHHHHHHCHHHHHSCEEEEE----EC
T ss_pred EEeccccccchhhhhhh-h-HHHHHHHHHHHhhhEEeCCc----cCCHHHHHHHHHHHHHHhHHhhcCCEEEEE----EC
Confidence 222111100 000000 0 0111 01122223333442 456778999999999999999999999999 99
Q ss_pred CCHHHHHHHHHHHHH-hhc-CceEEEEe-cChhHHH
Q 035832 191 LDWKARADVVKLLKH-LKK-ELTILVVS-HDLKEMA 223 (245)
Q Consensus 191 LD~~~~~~i~~~l~~-l~~-~~tiii~t-Hd~~~~~ 223 (245)
+|+... ..++.+.+ +.+ +.+++++| |.-+-+.
T Consensus 279 lDl~~~-~~~~~l~~~l~~~g~~vi~iSA~~g~gi~ 313 (416)
T 1udx_A 279 VDLLEE-EAVKALADALAREGLAVLPVSALTGAGLP 313 (416)
T ss_dssp CTTSCH-HHHHHHHHHHHTTTSCEEECCTTTCTTHH
T ss_pred CChhhH-HHHHHHHHHHHhcCCeEEEEECCCccCHH
Confidence 999876 44444443 443 45666555 5433333
|
| >1u0l_A Probable GTPase ENGC; permutation, OB-fold, zinc-finger, structural genomics, BSGC structure funded by NIH, protein structure initiative, PSI; HET: GDP; 2.80A {Thermotoga maritima} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.59 E-value=2.6e-17 Score=143.84 Aligned_cols=113 Identities=16% Similarity=0.133 Sum_probs=73.9
Q ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEE---cCccCCCCCCCCCCCCCCCcEEEEecCCCC--------
Q 035832 40 FSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINI---RGYNNDGEPNNSPEPLPPEKVGIVFQFPER-------- 108 (245)
Q Consensus 40 l~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~---~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~-------- 108 (245)
|++.+|++++|+||||||||||+|+|+|+.+|++|+|.+ +|+++..... ....+.+||++|.|..
T Consensus 164 f~~l~geiv~l~G~sG~GKSTll~~l~g~~~~~~G~i~~~~~~g~~~t~~~~----~~~~~~~g~v~q~p~~~~~~~~~~ 239 (301)
T 1u0l_A 164 KEYLKGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSEKLQRGRHTTTTAQ----LLKFDFGGYVVDTPGFANLEINDI 239 (301)
T ss_dssp HHHHSSSEEEEECSTTSSHHHHHHHHSTTCCCC-------------CCCSCC----EEECTTSCEEESSCSSTTCCCCSS
T ss_pred HHHhcCCeEEEECCCCCcHHHHHHHhcccccccccceecccCCCCCceeeeE----EEEcCCCCEEEECcCCCccCCCcC
Confidence 456789999999999999999999999999999999999 8887754321 1112468999999852
Q ss_pred -------CCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCCh
Q 035832 109 -------YFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSG 163 (245)
Q Consensus 109 -------~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSg 163 (245)
+|+.+|+ +|+.|+... .. .+...++.++++.++|.....++++++||+
T Consensus 240 ~~~~~~~l~~~~~~-~n~~~~~~~-~~-----~e~~~~v~~~l~~~~L~~~~~~~~~~~lse 294 (301)
T 1u0l_A 240 EPEELKHYFKEFGD-KQCFFSDCN-HV-----DEPECGVKEAVENGEIAESRYENYVKMFYE 294 (301)
T ss_dssp CHHHHGGGSTTSSS-CCCSSTTCC-SS-----SCSSCHHHHHHHHTSSCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHhccc-ccCcCCCCc-CC-----CCCCcHHHHHHHcCCCCHHHHHHHHHHHHH
Confidence 3667778 888775211 11 112235778899999962236888888885
|
| >2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B} | Back alignment and structure |
|---|
Probab=99.58 E-value=1.7e-15 Score=119.22 Aligned_cols=43 Identities=14% Similarity=0.159 Sum_probs=35.1
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-Cce-EEEEecC
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELT-ILVVSHD 218 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~t-iii~tHd 218 (245)
++.+|++|++|||++ +|+..++.+++++..+.+ +++ +|++||.
T Consensus 80 ~~~~~~lLilDE~~~-~~~~~~~~l~~li~~~~~~g~~~iiits~~ 124 (149)
T 2kjq_A 80 AAFEAEYLAVDQVEK-LGNEEQALLFSIFNRFRNSGKGFLLLGSEY 124 (149)
T ss_dssp GGGGCSEEEEESTTC-CCSHHHHHHHHHHHHHHHHTCCEEEEEESS
T ss_pred HHhCCCEEEEeCccc-cChHHHHHHHHHHHHHHHcCCcEEEEECCC
Confidence 356899999999998 666668899999998764 577 8888884
|
| >2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=99.57 E-value=1.2e-18 Score=140.46 Aligned_cols=137 Identities=18% Similarity=0.178 Sum_probs=80.6
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCC---cceEEEcCccCCCCCCCCCCCCCC-CcEE----EEecCCCCCCCcccHHH
Q 035832 46 SFGLIFGRSGSGKTTLLQLLAGLSKPT---SGSINIRGYNNDGEPNNSPEPLPP-EKVG----IVFQFPERYFVADNVLD 117 (245)
Q Consensus 46 e~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~~~~~~~~~~~~~~~-~~i~----~v~Q~~~~~~~~~tv~e 117 (245)
++++|+|+||||||||+++|+|+++|+ .|.|.++|.++....... ...++ +.+| +++|++. .|.. +
T Consensus 3 ~~v~IvG~SGsGKSTL~~~L~~~~~~~g~~~G~I~~dg~~i~~~~~~~-~d~~r~~~ig~~~~~~~~~~~-~~i~----~ 76 (171)
T 2f1r_A 3 LILSIVGTSDSGKTTLITRMMPILRERGLRVAVVKRHAHGDFEIDKEG-KDSWKIYNSGADVVIASPVKL-AFIR----R 76 (171)
T ss_dssp CEEEEEESCHHHHHHHHHHHHHHHHHTTCCEEEEEC-------------CHHHHHHHHTCEEEEECSSEE-EEEE----E
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhhhcCCceEEEEEcCcccccCCccc-hhHHHHHhcCCceEEECCCcE-EEEe----c
Confidence 589999999999999999999999998 899999998754321000 01112 2456 7888763 2200 0
Q ss_pred HHHhcCCCCCCchhHHHHHHHHHHHHHHH-c-CCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEE-------EEeCCC
Q 035832 118 EVIFGWPRQSGSIQLKEYLALNLQRAINW-V-GLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLL-------ILDEPL 188 (245)
Q Consensus 118 ~l~~~~~~~~~~~~~~~~~~~~~~~~l~~-~-~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~ll-------llDEPt 188 (245)
+ .. .. ...+.++++. + +++.. . ...|||||+||++||||++.+|++. +-|.|.
T Consensus 77 ----~------~~--~~--~a~l~~~i~~~l~g~dt~-i---~EglSgGq~qri~lARall~~p~i~~~~~~a~~~~~~~ 138 (171)
T 2f1r_A 77 ----V------SE--EE--GNDLDWIYERYLSDYDLV-I---TEGFSKAGKDRIVVVKKPEEVEHFRQGRILAVVCDERV 138 (171)
T ss_dssp ----C------CH--HH--HTCHHHHHHHHTTTCSEE-E---EESCGGGCCCEEEECSSGGGGGGGCSSCEEEEECSSCC
T ss_pred ----C------Ch--hh--hhCHHHHHHhhCCCCCEE-E---ECCcCCCCCcEEEEEecccCCCccCccceEEEEecCCc
Confidence 0 00 00 1123444444 3 44432 2 2249999999999999999999873 235553
Q ss_pred CC---CCHHHHHHHHHHHHHh
Q 035832 189 AG---LDWKARADVVKLLKHL 206 (245)
Q Consensus 189 s~---LD~~~~~~i~~~l~~l 206 (245)
.+ +|....+.+.+++.+.
T Consensus 139 ~~~~~f~~~~~~~~a~~i~~~ 159 (171)
T 2f1r_A 139 DGHKWFRRDEVERIAEFILSL 159 (171)
T ss_dssp SSSCEECTTCHHHHHHHHHHH
T ss_pred ccCcccCcccHHHHHHHHHHH
Confidence 22 3344556777777554
|
| >1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=99.55 E-value=3.8e-17 Score=142.18 Aligned_cols=128 Identities=16% Similarity=0.023 Sum_probs=85.2
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhc
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFG 122 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~ 122 (245)
.++.+++|+||+|||||||.+.|++++.+. | .. ++.+.+|+|+.. +.+.+..+|+.++
T Consensus 29 ~~~~ii~I~G~sGsGKSTla~~L~~~l~~~-g------~~-------------~~~~~iv~~D~f--~~~~~~~~~l~~~ 86 (290)
T 1odf_A 29 KCPLFIFFSGPQGSGKSFTSIQIYNHLMEK-Y------GG-------------EKSIGYASIDDF--YLTHEDQLKLNEQ 86 (290)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHH-H------GG-------------GSCEEEEEGGGG--BCCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhhhc-C------CC-------------CceEEEeccccc--cCChHHHHHHhcc
Confidence 568899999999999999999999998763 2 00 133566699973 3456888898765
Q ss_pred CCC---C--CCchhHHHHHHHHHHHHHHHcCCC-------CccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCC
Q 035832 123 WPR---Q--SGSIQLKEYLALNLQRAINWVGLD-------GTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAG 190 (245)
Q Consensus 123 ~~~---~--~~~~~~~~~~~~~~~~~l~~~~l~-------~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~ 190 (245)
.+. . .+.. .......+.+.++.+.-. ......+...+||||+||+.+|++...+|+|+|+||||++
T Consensus 87 ~~~~~l~~~~g~p--~a~d~~~l~~~l~~l~~g~~t~~~~~v~~p~y~~~~sgGq~~R~~~a~~~~~~~~IlIlEG~~~~ 164 (290)
T 1odf_A 87 FKNNKLLQGRGLP--GTHDMKLLQEVLNTIFNNNEHPDQDTVVLPKYDKSQFKGEGDRCPTGQKIKLPVDIFILEGWFLG 164 (290)
T ss_dssp TTTCGGGSSSCST--TSBCHHHHHHHHHHHTC------CCEEEECCEETTHHHHTCEECSSCEEEESSCSEEEEEESSTT
T ss_pred ccccchhhhccCc--chhHHHHHHHHHHHhhccCccccCcceeeccCccccCCccccccccccceEcCCCEEEEeCcccc
Confidence 211 0 0000 000112344455554322 1113455678999999999998433339999999999999
Q ss_pred CCHH
Q 035832 191 LDWK 194 (245)
Q Consensus 191 LD~~ 194 (245)
+|+.
T Consensus 165 ld~~ 168 (290)
T 1odf_A 165 FNPI 168 (290)
T ss_dssp CCCC
T ss_pred CCcc
Confidence 9985
|
| >3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A* | Back alignment and structure |
|---|
Probab=99.54 E-value=3.8e-14 Score=128.33 Aligned_cols=146 Identities=18% Similarity=0.198 Sum_probs=86.7
Q ss_pred EEcCCCEEEEECCCCCcHHHHHH--HHhCCCCCCcc-----eEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcc
Q 035832 41 SLPEKSFGLIFGRSGSGKTTLLQ--LLAGLSKPTSG-----SINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVAD 113 (245)
Q Consensus 41 ~i~~Ge~~~liG~nGsGKSTLl~--~l~Gl~~p~~G-----~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~ 113 (245)
-|++|++++|+||||||||||++ +++++.+++.| .+++++++..... ....+++++|+ ...
T Consensus 174 GI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~~~~~~---rl~~~a~~~gl---------~~~ 241 (400)
T 3lda_A 174 GVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEGTFRPV---RLVSIAQRFGL---------DPD 241 (400)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSSCCCHH---HHHHHHHHTTC---------CHH
T ss_pred CcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCCccCHH---HHHHHHHHcCC---------ChH
Confidence 57899999999999999999999 55688777554 6666654310000 00000011111 111
Q ss_pred cHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHH--HHHHHHHHH--hhCCCEEEEeCCCC
Q 035832 114 NVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYK--RRLALAIQL--VQVPDLLILDEPLA 189 (245)
Q Consensus 114 tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqk--qrv~iAral--~~~p~llllDEPts 189 (245)
++.+|+.+.. ...++. +.+.-++.+ ..+|+++++|||++
T Consensus 242 ~vleni~~~~-------------------------------------~~~~~~~~~~l~~~~~~l~~~~~~llVIDs~t~ 284 (400)
T 3lda_A 242 DALNNVAYAR-------------------------------------AYNADHQLRLLDAAAQMMSESRFSLIVVDSVMA 284 (400)
T ss_dssp HHHHTEEEEE-------------------------------------CCSHHHHHHHHHHHHHHHHHSCEEEEEEETGGG
T ss_pred hHhhcEEEec-------------------------------------cCChHHHHHHHHHHHHHHHhcCCceEEecchhh
Confidence 2333332210 111222 222222222 25799999999999
Q ss_pred CCCHHHH------------HHHHHHHHHhhc--CceEEEEecCh-------------------hHHHhhccEEEEEeCC
Q 035832 190 GLDWKAR------------ADVVKLLKHLKK--ELTILVVSHDL-------------------KEMAALVDHSWRMDMG 235 (245)
Q Consensus 190 ~LD~~~~------------~~i~~~l~~l~~--~~tiii~tHd~-------------------~~~~~~~d~v~~l~~G 235 (245)
.+|+... .++++.|+++.+ +.|||+++|.. ..+...+|.+++|+.+
T Consensus 285 ~~~~~~sg~g~l~~Rq~~l~~il~~L~~lake~gitVIlv~Hv~~~~~g~~~~~g~~~~p~gg~~l~~~ad~vl~L~~~ 363 (400)
T 3lda_A 285 LYRTDFSGRGELSARQMHLAKFMRALQRLADQFGVAVVVTNQVVAQVDGGMAFNPDPKKPIGGNIMAYSSTTRLGFKKG 363 (400)
T ss_dssp GCC------CCHHHHHHHHHHHHHHHHHHHHHHCCEEEEEEEC--------------------CHHHHHCSEEEEEEEC
T ss_pred hCchhhcCccchHHHHHHHHHHHHHHHHHHHHcCCEEEEEEeecccCCccccccCCCccCCchhHHHHhcceEEEEEec
Confidence 9997532 567777887753 68999999982 2346789999999875
|
| >2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.51 E-value=7.4e-19 Score=151.72 Aligned_cols=147 Identities=20% Similarity=0.188 Sum_probs=103.2
Q ss_pred cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCC
Q 035832 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFV 111 (245)
Q Consensus 32 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~ 111 (245)
..++++++|++++| ++|+||||||||||+++|+|...+ |.|.++|.++...... ...+.++++||......+
T Consensus 33 ~~~l~~~~l~~~~G--vlL~Gp~GtGKTtLakala~~~~~--~~i~i~g~~l~~~~~~----~~~~~i~~vf~~a~~~~p 104 (274)
T 2x8a_A 33 PDQFKALGLVTPAG--VLLAGPPGCGKTLLAKAVANESGL--NFISVKGPELLNMYVG----ESERAVRQVFQRAKNSAP 104 (274)
T ss_dssp HHHHHHTTCCCCSE--EEEESSTTSCHHHHHHHHHHHTTC--EEEEEETTTTCSSTTH----HHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHcCCCCCCe--EEEECCCCCcHHHHHHHHHHHcCC--CEEEEEcHHHHhhhhh----HHHHHHHHHHHHHHhcCC
Confidence 35789999999999 999999999999999999999877 7999998776432110 112468889987522345
Q ss_pred cccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCC--
Q 035832 112 ADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLA-- 189 (245)
Q Consensus 112 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts-- 189 (245)
..++.|++....... . .. ... ..... .++.+.+|||||+||+.|++|+..+|++| |||+.
T Consensus 105 ~i~~~Deid~~~~~r--~---~~----~~~------~~~~~-~~~~l~~Lsgg~~~~~~i~ia~tn~p~~L--D~al~r~ 166 (274)
T 2x8a_A 105 CVIFFDEVDALCPRR--S---DR----ETG------ASVRV-VNQLLTEMDGLEARQQVFIMAATNRPDII--DPAILRP 166 (274)
T ss_dssp EEEEEETCTTTCC------------------------CTTH-HHHHHHHHHTCCSTTCEEEEEEESCGGGS--CHHHHST
T ss_pred CeEeeehhhhhhccc--C---CC----cch------HHHHH-HHHHHHhhhcccccCCEEEEeecCChhhC--CHhhcCc
Confidence 566777776532110 0 00 000 12222 35667789999999999999999999975 99864
Q ss_pred ----------CCCHHHHHHHHHHHH
Q 035832 190 ----------GLDWKARADVVKLLK 204 (245)
Q Consensus 190 ----------~LD~~~~~~i~~~l~ 204 (245)
--|...+.++++.+.
T Consensus 167 gRfd~~i~~~~P~~~~r~~il~~~~ 191 (274)
T 2x8a_A 167 GRLDKTLFVGLPPPADRLAILKTIT 191 (274)
T ss_dssp TSSCEEEECCSCCHHHHHHHHHHHT
T ss_pred ccCCeEEEeCCcCHHHHHHHHHHHH
Confidence 347777877777654
|
| >1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A* | Back alignment and structure |
|---|
Probab=99.50 E-value=1.8e-17 Score=145.17 Aligned_cols=138 Identities=16% Similarity=0.078 Sum_probs=94.1
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEE-------------------cCCCEEEEECCCCCcHHHHHHHHhCCCC--CCcce
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSL-------------------PEKSFGLIFGRSGSGKTTLLQLLAGLSK--PTSGS 75 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i-------------------~~Ge~~~liG~nGsGKSTLl~~l~Gl~~--p~~G~ 75 (245)
+|+++||++.|. +++++++|.+ .+|+++||+||||||||||+++|+|++. |++|+
T Consensus 37 ~i~~~~v~~~y~----~~~~~i~~~~~~~~~~~~~~~~~l~~~~~~~g~iigI~G~~GsGKSTl~~~L~~~l~~~~~~G~ 112 (308)
T 1sq5_A 37 DLSLEEVAEIYL----PLSRLLNFYISSNLRRQAVLEQFLGTNGQRIPYIISIAGSVAVGKSTTARVLQALLSRWPEHRR 112 (308)
T ss_dssp TCCHHHHHHTHH----HHHHHHHHHHHHHHHHHHHHHHHHTCC-CCCCEEEEEEECTTSSHHHHHHHHHHHHTTSTTCCC
T ss_pred ccchHhHHHHHH----HHHHHHHHHHhhhhhHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHHhhCCCCCe
Confidence 589999999992 5899999988 8999999999999999999999999988 99999
Q ss_pred EEE---cCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCc
Q 035832 76 INI---RGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGT 152 (245)
Q Consensus 76 i~~---~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~ 152 (245)
|.+ +|..... ..++.+|++ |.+. .+..+++.+++.+.... .+-...
T Consensus 113 i~vi~~d~~~~~~--------~~~~~~~~v-q~~~-~~~~~~~~~~~~~~~~l---------------------~~~~~~ 161 (308)
T 1sq5_A 113 VELITTDGFLHPN--------QVLKERGLM-KKKG-FPESYDMHRLVKFVSDL---------------------KSGVPN 161 (308)
T ss_dssp EEEEEGGGGBCCH--------HHHHHHTCT-TCTT-SGGGBCHHHHHHHHHHH---------------------TTTCSC
T ss_pred EEEEecCCccCcH--------HHHHhCCEe-ecCC-CCCCccHHHHHHHHHHH---------------------hCCCCc
Confidence 999 8765311 012457787 7653 44566787777653100 000000
Q ss_pred cCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 035832 153 SLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLD 192 (245)
Q Consensus 153 ~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD 192 (245)
...+....+.+ +|+..+.+.+.+|+++|+|.|....+
T Consensus 162 -i~~P~~~~~~~--~~~~~~~~~~~~~~ivIlEG~~l~~~ 198 (308)
T 1sq5_A 162 -VTAPVYSHLIY--DVIPDGDKTVVQPDILILEGLNVLQS 198 (308)
T ss_dssp -EEECCEETTTT--EECTTCCEEEC-CCEEEEECTTTTCC
T ss_pred -eeccccccccc--CcccccceecCCCCEEEECchhhCCC
Confidence 11122222222 33332334456789999999998876
|
| >1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=99.50 E-value=4e-19 Score=146.14 Aligned_cols=56 Identities=23% Similarity=0.251 Sum_probs=41.1
Q ss_pred HHH-HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEe
Q 035832 171 LAI-QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMD 233 (245)
Q Consensus 171 iAr-al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~ 233 (245)
.|+ +++.+|++++|||||+++|..+.+.+.+.|....++ +.++|.. ..+|++++++
T Consensus 116 ~~~~~~l~~p~~~ilde~~~~~d~~~e~~i~~~l~~~~~~---~~~a~~~----~~~D~iivnd 172 (198)
T 1lvg_A 116 CPIYIFVQPPSLDVLEQRLRLRNTETEESLAKRLAAARTD---MESSKEP----GLFDLVIIND 172 (198)
T ss_dssp CCEEEEEECSCHHHHHHHHHHHTCSCHHHHHHHHHHHHHH---TTGGGST----TTCSEEEECS
T ss_pred CcEEEEEeCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHH---HHHhhcc----CCceEEEECC
Confidence 456 788889999999999999999999998888776533 1234511 4567777665
|
| >1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A* | Back alignment and structure |
|---|
Probab=99.49 E-value=2.4e-18 Score=152.31 Aligned_cols=182 Identities=16% Similarity=0.143 Sum_probs=115.6
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCC-------CEEEEECCCCCcHHHHHHHHhCCC----CCCcceEEEcCccCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEK-------SFGLIFGRSGSGKTTLLQLLAGLS----KPTSGSINIRGYNNDG 85 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~G-------e~~~liG~nGsGKSTLl~~l~Gl~----~p~~G~i~~~g~~~~~ 85 (245)
+++.++++..|++ ..+++++++.+++| +.++|+||||+|||||+++|+|.+ .+++|.+..++.++..
T Consensus 18 ~lr~~~l~~~~g~--~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~~~~l~~ 95 (334)
T 1in4_A 18 FLRPKSLDEFIGQ--ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVKQGDMAA 95 (334)
T ss_dssp TTSCSSGGGCCSC--HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCSHHHHHH
T ss_pred HcCCccHHHccCc--HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcCHHHHHH
Confidence 3566777777754 45899999999877 899999999999999999999998 6778877766654421
Q ss_pred CCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCc-hhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChH
Q 035832 86 EPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGS-IQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGG 164 (245)
Q Consensus 86 ~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~-~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG 164 (245)
... ...+..|.|++|... +.. ++.+++.......... ..........+...+..+++.. ...++..||+|
T Consensus 96 ~~~----~~~~~~v~~iDE~~~--l~~-~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~--at~~~~~Ls~~ 166 (334)
T 1in4_A 96 ILT----SLERGDVLFIDEIHR--LNK-AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVG--ATTRSGLLSSP 166 (334)
T ss_dssp HHH----HCCTTCEEEEETGGG--CCH-HHHHHHHHHHHTSCCCC---------------CCCEEEE--EESCGGGSCHH
T ss_pred HHH----HccCCCEEEEcchhh--cCH-HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEE--ecCCcccCCHH
Confidence 100 012356999998753 333 6777764321110000 0000111223444455566643 46678899999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccE
Q 035832 165 YKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDH 228 (245)
Q Consensus 165 qkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~ 228 (245)
++||+.++ .+||+.+.+++.++|++..+... ++|+.+.+..++++
T Consensus 167 l~sR~~l~----------------~~Ld~~~~~~l~~iL~~~~~~~~---~~~~~~~~~~ia~~ 211 (334)
T 1in4_A 167 LRSRFGII----------------LELDFYTVKELKEIIKRAASLMD---VEIEDAAAEMIAKR 211 (334)
T ss_dssp HHTTCSEE----------------EECCCCCHHHHHHHHHHHHHHTT---CCBCHHHHHHHHHT
T ss_pred HHHhcCce----------------eeCCCCCHHHHHHHHHHHHHHcC---CCcCHHHHHHHHHh
Confidence 99998655 78888889999999988753211 36777766666553
|
| >3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP} | Back alignment and structure |
|---|
Probab=99.49 E-value=6.5e-17 Score=133.56 Aligned_cols=120 Identities=15% Similarity=0.066 Sum_probs=66.5
Q ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHh
Q 035832 42 LPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIF 121 (245)
Q Consensus 42 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~ 121 (245)
.++|++++|+||||||||||+++|+|+++|+ | ..+|+++++.. .+ ..+..+++..
T Consensus 19 ~~~g~~v~I~G~sGsGKSTl~~~l~~~~~~~-g----------------------~~~g~v~~d~~-~~-~~~~~~~~~~ 73 (208)
T 3c8u_A 19 QPGRQLVALSGAPGSGKSTLSNPLAAALSAQ-G----------------------LPAEVVPMDGF-HL-DNRLLEPRGL 73 (208)
T ss_dssp CCSCEEEEEECCTTSCTHHHHHHHHHHHHHT-T----------------------CCEEEEESGGG-BC-CHHHHGGGTC
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHhhc-C----------------------CceEEEecCCC-cC-CHHHHHHhcc
Confidence 5789999999999999999999999999864 2 01445554431 11 1122222210
Q ss_pred -cCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHH-HHHhhCCCEEEEeCCC
Q 035832 122 -GWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALA-IQLVQVPDLLILDEPL 188 (245)
Q Consensus 122 -~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iA-ral~~~p~llllDEPt 188 (245)
.......... .......+..+-..-.+.-. .......+|+||+||+++| ++++.++.++++|||.
T Consensus 74 ~~~~~~~~~~~-~~~~~~~l~~l~~~~~i~~p-~~d~~~~~~~g~~~~v~~~~~~~i~eg~~~l~de~~ 140 (208)
T 3c8u_A 74 LPRKGAPETFD-FEGFQRLCHALKHQERVIYP-LFDRARDIAIAGAAEVGPECRVAIIEGNYLLFDAPG 140 (208)
T ss_dssp GGGTTSGGGBC-HHHHHHHHHHHHHCSCEEEE-EEETTTTEEEEEEEEECTTCCEEEEEESSTTBCSTT
T ss_pred cccCCCCchhh-HHHHHHHHHHHhcCCceecc-cCCccccCCCCCceEEcCCCcEEEECCceeccCCch
Confidence 0000000000 11111111111111011100 1123345799999999998 8888898888899984
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=99.47 E-value=3.3e-14 Score=131.19 Aligned_cols=52 Identities=21% Similarity=0.296 Sum_probs=49.6
Q ss_pred ceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCC
Q 035832 33 DILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDG 85 (245)
Q Consensus 33 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~ 85 (245)
.+|+++||+|++ ++++|+||||||||||+++|+|+++|++|+|.++|+++..
T Consensus 18 ~~l~~vsl~i~~-e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~I~~~g~~~~~ 69 (483)
T 3euj_A 18 NGFFARTFDFDE-LVTTLSGGNGAGKSTTMAGFVTALIPDLTLLNFRNTTEAG 69 (483)
T ss_dssp TTEEEEEEECCS-SEEEEECCTTSSHHHHHHHHHHHHCCCTTTCCCCCTTSCS
T ss_pred ccccceEEEEcc-ceEEEECCCCCcHHHHHHHHhcCCCCCCCEEEECCEEccc
Confidence 479999999999 9999999999999999999999999999999999998864
|
| >1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8 | Back alignment and structure |
|---|
Probab=99.42 E-value=1.1e-15 Score=133.80 Aligned_cols=121 Identities=17% Similarity=0.154 Sum_probs=66.6
Q ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEE---cCccCCCCCCCCCCCCCCCcEEEEecCCCCCCC---cc
Q 035832 40 FSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINI---RGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFV---AD 113 (245)
Q Consensus 40 l~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~---~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~---~~ 113 (245)
+++.+|++++|+||||||||||+|+|+|+.+|++|+|.+ +|+.++... ...+..+||++|.|....+ .+
T Consensus 168 ~~~~~G~~~~lvG~sG~GKSTLln~L~g~~~~~~G~I~~~~~~G~~tt~~~-----~~~~~~~g~v~dtpg~~~~~l~~l 242 (307)
T 1t9h_A 168 IPHFQDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISEHLGRGKHTTRHV-----ELIHTSGGLVADTPGFSSLEFTDI 242 (307)
T ss_dssp GGGGTTSEEEEEESHHHHHHHHHHHHCC-------------------CCCC-----CEEEETTEEEESSCSCSSCCCTTC
T ss_pred HhhcCCCEEEEECCCCCCHHHHHHHhcccccccccceeeecCCCcccccHH-----HHhhcCCEEEecCCCccccccccC
Confidence 677899999999999999999999999999999999998 777654321 1111127999999863321 46
Q ss_pred cHHHHHHhcCCCC---------CCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHH
Q 035832 114 NVLDEVIFGWPRQ---------SGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRR 168 (245)
Q Consensus 114 tv~e~l~~~~~~~---------~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqr 168 (245)
|+ +++...++.. .... ...+....+.++++.++|.+. ..+....|+.|++||
T Consensus 243 t~-e~l~~~f~~~~~~~~~C~f~~c~-h~~e~~~~v~~aLe~~~L~~~-r~~~y~~lls~~~~~ 303 (307)
T 1t9h_A 243 EE-EELGYTFPDIREKSSSCKFRGCL-HLKEPKCAVKQAVEDGELKQY-RYDHYVEFMTEIKDR 303 (307)
T ss_dssp CH-HHHGGGSHHHHHHGGGCSSTTCC-SSSCSSCHHHHHHHHTSSCHH-HHHHHHHHHHHHHTT
T ss_pred CH-HHHHHHHHHHHHHhhhccccCCC-CccCHHHHHHHHHHhCCChHH-HHHHHHHHHHHHhhc
Confidence 78 8884222100 0000 001112357788999999763 234455666777763
|
| >1ni3_A YCHF GTPase, YCHF GTP-binding protein; structural genomics, GTP1OBG, PSI, protein structure initiative; 2.80A {Schizosaccharomyces pombe} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=99.40 E-value=2.4e-17 Score=148.81 Aligned_cols=169 Identities=15% Similarity=0.121 Sum_probs=108.5
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhC------------CCCCCcceEEEcCccCCCCCCCCCCCCCCCcE---EEEecC
Q 035832 41 SLPEKSFGLIFGRSGSGKTTLLQLLAG------------LSKPTSGSINIRGYNNDGEPNNSPEPLPPEKV---GIVFQF 105 (245)
Q Consensus 41 ~i~~Ge~~~liG~nGsGKSTLl~~l~G------------l~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i---~~v~Q~ 105 (245)
.+++|..++|+|+||||||||+|+|+| ...|+.|.+.+.|..+...... ...++.+ .++.+.
T Consensus 16 ~v~~g~~vgiVG~pnaGKSTL~n~Ltg~~~a~~~~~p~tTi~p~~G~v~v~~~r~~~l~~~---~~~~~~v~~~i~lvD~ 92 (392)
T 1ni3_A 16 RPGNNLKTGIVGMPNVGKSTFFRAITKSVLGNPANYPYATIDPEEAKVAVPDERFDWLCEA---YKPKSRVPAFLTVFDI 92 (392)
T ss_dssp SSSSCCEEEEEECSSSSHHHHHHHHHHSTTTSTTCCSSCCCCTTEEEEEECCHHHHHHHHH---HCCSEEECEEEEEECT
T ss_pred cccCCCEEEEECCCCCCHHHHHHHHHCCCcccccCCCceeecceeeeeeeCCcchhhhhhh---cccccccCcceEEEec
Confidence 457899999999999999999999999 5678999999987432100000 0001223 355565
Q ss_pred CCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCC--CEEE
Q 035832 106 PERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVP--DLLI 183 (245)
Q Consensus 106 ~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p--~lll 183 (245)
|. +....+..+++ .. ...... ..++.++..++.. .+..+..+|++. +| ++++
T Consensus 93 pG-l~~~~s~~e~L--------~~-~fl~~i-r~~d~il~Vvd~~---~d~~i~~v~~~~------------dP~~di~i 146 (392)
T 1ni3_A 93 AG-LTKGASTGVGL--------GN-AFLSHV-RAVDAIYQVVRAF---DDAEIIHVEGDV------------DPIRDLSI 146 (392)
T ss_dssp GG-GCCCCCSSSSS--------CH-HHHHHH-TTCSEEEEEEECC---CTTCSSCCSSSS------------CHHHHHHH
T ss_pred cc-cccCCcHHHHH--------HH-HHHHHH-HHHHHHHHHHhcc---ccceeeeecccc------------Ccchhhhh
Confidence 53 22222221111 00 000000 0011112222222 144555577763 89 9999
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHh-hc-CceEEEEecChhHHHhhccEEE-EEeCC-eEEEe
Q 035832 184 LDEPLAGLDWKARADVVKLLKHL-KK-ELTILVVSHDLKEMAALVDHSW-RMDMG-GFLVE 240 (245)
Q Consensus 184 lDEPts~LD~~~~~~i~~~l~~l-~~-~~tiii~tHd~~~~~~~~d~v~-~l~~G-~i~~~ 240 (245)
+|||+.++|+...+..++.+... .+ +.|++ +|++..+..+|+++. +|++| +++..
T Consensus 147 ldeel~~~D~~~~~k~~~~l~~~~~~~g~ti~--sh~~~~~~~l~~~i~~~L~~G~~~~~~ 205 (392)
T 1ni3_A 147 IVDELLIKDAEFVEKHLEGLRKITSRGANTLE--MKAKKEEQAIIEKVYQYLTETKQPIRK 205 (392)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTTCCSSCSSS--HHHHHHHHHHHHHHHHHHHTTCSCGGG
T ss_pred chhhhHHHHHHHHHHHHHHHHHHHHhcCCccc--cccHHHHHHHHHHHHHHhccCCceeec
Confidence 99999999999999999999988 54 46653 999999999999999 89999 77643
|
| >1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=1.6e-12 Score=113.18 Aligned_cols=142 Identities=18% Similarity=0.162 Sum_probs=98.8
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
+.++++++.|+.. . ++++|+ +|++++++|+||+||||+++.|++++.+..|+|.+.+.|...
T Consensus 77 ~~~~~l~~~~~~~--~--~~i~~~--~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~d~~~------------ 138 (295)
T 1ls1_A 77 TVYEALKEALGGE--A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADTQR------------ 138 (295)
T ss_dssp HHHHHHHHHTTSS--C--CCCCCC--SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEECCSSC------------
T ss_pred HHHHHHHHHHCCC--C--ceeecC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecCCccc------------
Confidence 4566777888532 2 788888 999999999999999999999999999888888886544310
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ 177 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~ 177 (245)
+ ... +. ...+.+..++.-..... ..+..+.+|.+|+++...
T Consensus 139 --------~------~~~-~q---------------------l~~~~~~~~l~~~~~~~---~~~p~~l~~~~l~~~~~~ 179 (295)
T 1ls1_A 139 --------P------AAR-EQ---------------------LRLLGEKVGVPVLEVMD---GESPESIRRRVEEKARLE 179 (295)
T ss_dssp --------H------HHH-HH---------------------HHHHHHHHTCCEEECCT---TCCHHHHHHHHHHHHHHH
T ss_pred --------H------hHH-HH---------------------HHHhcccCCeEEEEcCC---CCCHHHHHHHHHHHHHhC
Confidence 0 000 00 00112233554221011 233445678999999889
Q ss_pred CCCEEEEeCC-CCCCCHHHHHHHHHHHHHhhcCceEEEEe
Q 035832 178 VPDLLILDEP-LAGLDWKARADVVKLLKHLKKELTILVVS 216 (245)
Q Consensus 178 ~p~llllDEP-ts~LD~~~~~~i~~~l~~l~~~~tiii~t 216 (245)
+++++|+||| +.++|.....++.++...+....+++++.
T Consensus 180 ~~D~viiDtpp~~~~d~~~~~~l~~~~~~~~~~~~~lv~~ 219 (295)
T 1ls1_A 180 ARDLILVDTAGRLQIDEPLMGELARLKEVLGPDEVLLVLD 219 (295)
T ss_dssp TCCEEEEECCCCSSCCHHHHHHHHHHHHHHCCSEEEEEEE
T ss_pred CCCEEEEeCCCCccccHHHHHHHHHHhhhcCCCEEEEEEe
Confidence 9999999999 99999998888888877765444555444
|
| >2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A* | Back alignment and structure |
|---|
Probab=99.39 E-value=5.9e-13 Score=115.95 Aligned_cols=139 Identities=15% Similarity=0.202 Sum_probs=90.7
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhc
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFG 122 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~ 122 (245)
.+|++++++|||||||||+++.|++.+.+++| +++.++.+++. ..++.+.+.
T Consensus 103 ~~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G----------------------~~V~lv~~D~~----r~~a~eqL~-- 154 (296)
T 2px0_A 103 IHSKYIVLFGSTGAGKTTTLAKLAAISMLEKH----------------------KKIAFITTDTY----RIAAVEQLK-- 154 (296)
T ss_dssp CCSSEEEEEESTTSSHHHHHHHHHHHHHHTTC----------------------CCEEEEECCCS----STTHHHHHH--
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHHHhcC----------------------CEEEEEecCcc----cchHHHHHH--
Confidence 47999999999999999999999999987666 13566666652 122222222
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHH
Q 035832 123 WPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKL 202 (245)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~ 202 (245)
.+.+..|+.-. .. .+ +..-+.++++ +.+|+++|+| |+|+|+.....+.++
T Consensus 155 -------------------~~~~~~gl~~~-~~-----~~-~~~l~~al~~--~~~~dlvIiD--T~G~~~~~~~~~~el 204 (296)
T 2px0_A 155 -------------------TYAELLQAPLE-VC-----YT-KEEFQQAKEL--FSEYDHVFVD--TAGRNFKDPQYIDEL 204 (296)
T ss_dssp -------------------HHHTTTTCCCC-BC-----SS-HHHHHHHHHH--GGGSSEEEEE--CCCCCTTSHHHHHHH
T ss_pred -------------------HHHHhcCCCeE-ec-----CC-HHHHHHHHHH--hcCCCEEEEe--CCCCChhhHHHHHHH
Confidence 12222344321 11 12 2334556664 4999999999 999998776655555
Q ss_pred HHHhh---cC-ceEEE-EecChhHHHhhccEEEEEeCCeEEE
Q 035832 203 LKHLK---KE-LTILV-VSHDLKEMAALVDHSWRMDMGGFLV 239 (245)
Q Consensus 203 l~~l~---~~-~tiii-~tHd~~~~~~~~d~v~~l~~G~i~~ 239 (245)
.+-+. .. ..+++ +||+.+.+..+++++..+..++++.
T Consensus 205 ~~~l~~~~~~~~~lVl~at~~~~~~~~~~~~~~~l~~~giVl 246 (296)
T 2px0_A 205 KETIPFESSIQSFLVLSATAKYEDMKHIVKRFSSVPVNQYIF 246 (296)
T ss_dssp HHHSCCCTTEEEEEEEETTBCHHHHHHHTTTTSSSCCCEEEE
T ss_pred HHHHhhcCCCeEEEEEECCCCHHHHHHHHHHHhcCCCCEEEE
Confidence 44433 12 23444 4999888888888876666677665
|
| >1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10 | Back alignment and structure |
|---|
Probab=99.39 E-value=9.2e-14 Score=121.61 Aligned_cols=99 Identities=20% Similarity=0.156 Sum_probs=74.3
Q ss_pred eeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHH
Q 035832 37 GVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVL 116 (245)
Q Consensus 37 ~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~ 116 (245)
.++|+.++|++++|+|||||||||+++.|++.+++..|+|.+.+.|.. + . ...
T Consensus 96 ~~~~~~~~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~D~~-----------r---------------~-~a~ 148 (306)
T 1vma_A 96 KLNVPPEPPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAADTF-----------R---------------A-AAI 148 (306)
T ss_dssp CCCCCSSSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEECTT-----------C---------------H-HHH
T ss_pred CCcccCCCCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEccccc-----------c---------------H-HHH
Confidence 456677899999999999999999999999999988888877554320 0 0 000
Q ss_pred HHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHH---HHHHHHhhCCCEEEEeCCCC
Q 035832 117 DEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRL---ALAIQLVQVPDLLILDEPLA 189 (245)
Q Consensus 117 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv---~iAral~~~p~llllDEPts 189 (245)
+.+..+.+.++++- ...+|+|+.|++ ++++|+..+|+++|+|||..
T Consensus 149 ---------------------eqL~~~~~~~gl~~------~~~~s~~~~~~v~~~al~~a~~~~~dvvIiDtpg~ 197 (306)
T 1vma_A 149 ---------------------EQLKIWGERVGATV------ISHSEGADPAAVAFDAVAHALARNKDVVIIDTAGR 197 (306)
T ss_dssp ---------------------HHHHHHHHHHTCEE------ECCSTTCCHHHHHHHHHHHHHHTTCSEEEEEECCC
T ss_pred ---------------------HHHHHHHHHcCCcE------EecCCccCHHHHHHHHHHHHHhcCCCEEEEECCCc
Confidence 11223445556642 225689999999 99999999999999999974
|
| >1qhl_A Protein (cell division protein MUKB); SMC, chromosome partitioning; 2.20A {Escherichia coli} SCOP: c.37.1.12 | Back alignment and structure |
|---|
Probab=99.34 E-value=1.4e-14 Score=121.57 Aligned_cols=79 Identities=16% Similarity=0.137 Sum_probs=51.8
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCC----CCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNN----SPE 92 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~----~~~ 92 (245)
.|+++|++..|+ . +|+|.+ ++++|+||||||||||+++|+|++.|++|+|.++|.++...... ...
T Consensus 9 ~l~l~~~~~~~~---~------~~~~~~-~~~~i~GpnGsGKSTll~~i~g~~~~~~G~i~~~g~~~~~~~~~~~~~~~~ 78 (227)
T 1qhl_A 9 SLTLINWNGFFA---R------TFDLDE-LVTTLSGGNGAGKSTTMAAFVTALIPDLTLLHFRNTTEAGATSGSRDKGLH 78 (227)
T ss_dssp EEEEEEETTEEE---E------EECHHH-HHHHHHSCCSHHHHHHHHHHHHHHSCCTTTC------------------CG
T ss_pred EEEEEeeecccC---C------EEEEcC-cEEEEECCCCCCHHHHHHHHhcccccCCCeEEECCEEcccCCccccccchh
Confidence 588888865542 1 566666 89999999999999999999999999999999999887432211 011
Q ss_pred CCCCCcEEEEecC
Q 035832 93 PLPPEKVGIVFQF 105 (245)
Q Consensus 93 ~~~~~~i~~v~Q~ 105 (245)
...+..++|+||.
T Consensus 79 ~~~~~~i~~v~~~ 91 (227)
T 1qhl_A 79 GKLKAGVCYSMLD 91 (227)
T ss_dssp GGBCSSEEEEEEE
T ss_pred hHhhcCcEEEEEe
Confidence 1124679999975
|
| >3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=99.32 E-value=1.2e-13 Score=112.67 Aligned_cols=74 Identities=22% Similarity=0.139 Sum_probs=52.7
Q ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHH
Q 035832 39 SFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDE 118 (245)
Q Consensus 39 sl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~ 118 (245)
|+++++|++++|+||||||||||+++|+|+++ .+.+.+..+...... ..+..++|+||++. .|..+++.++
T Consensus 1 s~~m~~g~ii~l~Gp~GsGKSTl~~~L~~~~~----~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~~~~~~~~~ 71 (205)
T 3tr0_A 1 SNAMNKANLFIISAPSGAGKTSLVRALVKALA----EIKISISHTTRPKRP----GDQEGVDYFFIDET-RFQAMVKEGA 71 (205)
T ss_dssp ----CCCCEEEEECCTTSCHHHHHHHHHHHSS----SEEECCCEECSCCCT----TCCBTTTBEECCHH-HHHHHHHHTC
T ss_pred CCcCCCCcEEEEECcCCCCHHHHHHHHHhhCC----CeEEeceeccCCCch----hHhcCceEEeccHH-HHHHHHhcCc
Confidence 67889999999999999999999999999974 578877665443211 12457899999974 5556666666
Q ss_pred HHh
Q 035832 119 VIF 121 (245)
Q Consensus 119 l~~ 121 (245)
+..
T Consensus 72 ~~~ 74 (205)
T 3tr0_A 72 FLE 74 (205)
T ss_dssp EEE
T ss_pred EEe
Confidence 543
|
| >1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=99.28 E-value=5.3e-16 Score=133.48 Aligned_cols=158 Identities=21% Similarity=0.247 Sum_probs=100.2
Q ss_pred EEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCc
Q 035832 19 EVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEK 98 (245)
Q Consensus 19 ~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~ 98 (245)
+++++.+.|.. ..++++++|++++| ++|+||||||||||+++|++... .|.|.+++.++...... ...+.
T Consensus 51 ~l~~l~~~~~~--~~~l~~~~~~~~~g--vll~Gp~GtGKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~----~~~~~ 120 (278)
T 1iy2_A 51 ELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVG----VGAAR 120 (278)
T ss_dssp HHHHHHHHHHC--HHHHHHTTCCCCCE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSTTT----HHHHH
T ss_pred HHHHHHHHHHC--HHHHHHcCCCCCCe--EEEECCCcChHHHHHHHHHHHcC--CCEEEecHHHHHHHHhh----HHHHH
Confidence 34455555532 35789999999999 88999999999999999999885 78999988765322110 11245
Q ss_pred EEEEecCCCCCCCcccHHHHHH-hcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh
Q 035832 99 VGIVFQFPERYFVADNVLDEVI-FGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ 177 (245)
Q Consensus 99 i~~v~Q~~~~~~~~~tv~e~l~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~ 177 (245)
++++||......+..++.|++. ++.................+.++ ..+|||||+||+.+++|+..
T Consensus 121 i~~~~~~~~~~~~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~l--------------l~~lsgg~~~~~~i~~a~t~ 186 (278)
T 1iy2_A 121 VRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQL--------------LVEMDGFEKDTAIVVMAATN 186 (278)
T ss_dssp HHHHHHHHHTSCSEEEEEETHHHHHCC--------CHHHHHHHHHH--------------HHHHTTCCTTCCEEEEEEES
T ss_pred HHHHHHHHHhcCCcEEehhhhHhhhcccccccCCcchHHHHHHHHH--------------HHHHhCCCCCCCEEEEEecC
Confidence 7788887533345567777773 43211100000001111122222 23589999999999999999
Q ss_pred CCCEEEEeCCCC------------CCCHHHHHHHHHH
Q 035832 178 VPDLLILDEPLA------------GLDWKARADVVKL 202 (245)
Q Consensus 178 ~p~llllDEPts------------~LD~~~~~~i~~~ 202 (245)
+|++ +|++.. -.|...+.++++.
T Consensus 187 ~p~~--ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~ 221 (278)
T 1iy2_A 187 RPDI--LDPALLRPGRFDRQIAIDAPDVKGREQILRI 221 (278)
T ss_dssp CTTS--SCHHHHSTTSSCCEEECCCCCHHHHHHHHHH
T ss_pred Cchh--CCHhHcCCCcCCeEEEeCCcCHHHHHHHHHH
Confidence 9987 676532 2356666666553
|
| >2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A* | Back alignment and structure |
|---|
Probab=99.28 E-value=8.2e-14 Score=129.42 Aligned_cols=175 Identities=13% Similarity=0.055 Sum_probs=106.3
Q ss_pred eeeeEEEcCCCEEEEECCCCCcHHHHHHHHhC--CCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCC--
Q 035832 36 NGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAG--LSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFV-- 111 (245)
Q Consensus 36 ~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G--l~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~-- 111 (245)
+.+++++.++..++|.|++||||||++++|.. +.+++.|++.+.+.|........ + .. -|. .+.
T Consensus 158 ~pv~ldL~~~pHlLIaG~TGSGKSt~L~~li~sLl~~~~p~~v~l~liDpK~~el~~---~--~~------lPh-l~~~V 225 (512)
T 2ius_A 158 EPVVADLAKMPHLLVAGTTGSGASVGVNAMILSMLYKAQPEDVRFIMIDPKMLELSV---Y--EG------IPH-LLTEV 225 (512)
T ss_dssp CEEEEEGGGSCSEEEECCTTSSHHHHHHHHHHHHHTTCCTTTEEEEEECCSSSGGGG---G--TT------CTT-BSSSC
T ss_pred CEEEEEcccCceEEEECCCCCCHHHHHHHHHHHHHHhCCCceEEEEEECCchhhhhh---h--cc------CCc-cccee
Confidence 35788999999999999999999999999876 66777788888776643211000 0 00 010 100
Q ss_pred cccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccC-C-CCCCCCChHHHHHH----------HHHHHHhhCC
Q 035832 112 ADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSL-D-KDPHSLSGGYKRRL----------ALAIQLVQVP 179 (245)
Q Consensus 112 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~-~-~~~~~LSgGqkqrv----------~iAral~~~p 179 (245)
-....+-... ......+++++. ++++.+|+.+... + +....+|+||+|+. .+|+++...|
T Consensus 226 vtd~~~a~~~-------L~~~~~EmerR~-~ll~~~Gv~~i~~yn~~~~~~~s~G~~~~~~~~~pg~~~~~~a~~l~~lP 297 (512)
T 2ius_A 226 VTDMKDAANA-------LRWCVNEMERRY-KLMSALGVRNLAGYNEKIAEADRMMRPIPDPYWKPGDSMDAQHPVLKKEP 297 (512)
T ss_dssp BCSHHHHHHH-------HHHHHHHHHHHH-HHHHHTTCSSHHHHHHHHHHHHHTTCCCBCTTC---------CCBCCCCC
T ss_pred ecCHHHHHHH-------HHHHHHHHHHHH-HHHHHcCCccHHHHHHHHHHHhhcCCcccccccccccchhccccccccCC
Confidence 0111110000 001123344443 6778888765310 1 12245788887752 3566777889
Q ss_pred C-EEEEeCCCCCCCHHHHHHHHHHHHHhh----c-CceEEEEecChh-------HHHhhccEEEE
Q 035832 180 D-LLILDEPLAGLDWKARADVVKLLKHLK----K-ELTILVVSHDLK-------EMAALVDHSWR 231 (245)
Q Consensus 180 ~-llllDEPts~LD~~~~~~i~~~l~~l~----~-~~tiii~tHd~~-------~~~~~~d~v~~ 231 (245)
. ++++||+++-+|.. ...+.+.|.++. . +.++|++||++. ....+..|+.+
T Consensus 298 ~ivlvIDE~~~ll~~~-~~~~~~~l~~Lar~gRa~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~l 361 (512)
T 2ius_A 298 YIVVLVDEFADLMMTV-GKKVEELIARLAQKARAAGIHLVLATQRPSVDVITGLIKANIPTRIAF 361 (512)
T ss_dssp EEEEEEETHHHHHHHH-HHHHHHHHHHHHHHCGGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEE
T ss_pred cEEEEEeCHHHHHhhh-hHHHHHHHHHHHHHhhhCCcEEEEEecCCccccccHHHHhhcCCeEEE
Confidence 8 89999999988843 345555555542 2 579999999987 34566677665
|
| >1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A* | Back alignment and structure |
|---|
Probab=99.27 E-value=4.2e-16 Score=132.10 Aligned_cols=160 Identities=21% Similarity=0.251 Sum_probs=102.6
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
.+++++.+.|.. ..+++++++++++| ++|+||||||||||+++|++... .|.+.+++.++...... ...+
T Consensus 26 ~~l~~l~~~~~~--~~~~~~~~~~~~~g--~ll~G~~G~GKTtl~~~i~~~~~--~~~i~~~~~~~~~~~~~----~~~~ 95 (254)
T 1ixz_A 26 EELKEIVEFLKN--PSRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVG----VGAA 95 (254)
T ss_dssp HHHHHHHHHHHC--HHHHHHTTCCCCSE--EEEECCTTSSHHHHHHHHHHHTT--CCEEEEEHHHHHHSCTT----HHHH
T ss_pred HHHHHHHHHHHC--HHHHHHcCCCCCCe--EEEECCCCCCHHHHHHHHHHHhC--CCEEEeeHHHHHHHHhh----HHHH
Confidence 455666666643 35799999999999 88999999999999999999885 78999988765322110 1124
Q ss_pred cEEEEecCCCCCCCcccHHHHH-HhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 98 KVGIVFQFPERYFVADNVLDEV-IFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l-~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
.++++||......+..++.|++ .++.................+.+++ ..|||||+||+.+++|+.
T Consensus 96 ~i~~~~~~~~~~~~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll--------------~~l~g~~~~~~~i~~a~t 161 (254)
T 1ixz_A 96 RVRDLFETAKRHAPCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLL--------------VEMDGFEKDTAIVVMAAT 161 (254)
T ss_dssp HHHHHHHHHTTSSSEEEEEETHHHHHC---------CHHHHHHHHHHH--------------HHHHTCCTTCCEEEEEEE
T ss_pred HHHHHHHHHHhcCCeEEEehhhhhhhcccCccccccchHHHHHHHHHH--------------HHHhCCCCCCCEEEEEcc
Confidence 5778888753334556777777 3432111000000011111222222 357899999999999999
Q ss_pred hCCCEEEEeCCCC------------CCCHHHHHHHHHHH
Q 035832 177 QVPDLLILDEPLA------------GLDWKARADVVKLL 203 (245)
Q Consensus 177 ~~p~llllDEPts------------~LD~~~~~~i~~~l 203 (245)
.+|++ +|++.. -.|...+.++++..
T Consensus 162 ~~p~~--ld~~l~r~~rf~~~i~i~~p~~~~r~~il~~~ 198 (254)
T 1ixz_A 162 NRPDI--LDPALLRPGRFDRQIAIDAPDVKGREQILRIH 198 (254)
T ss_dssp SCGGG--SCGGGGSTTSSCEEEECCSCCHHHHHHHHHHH
T ss_pred CCchh--CCHHHcCCCcCCeEEeeCCcCHHHHHHHHHHH
Confidence 99987 677654 23666666666543
|
| >3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus} | Back alignment and structure |
|---|
Probab=99.24 E-value=2.1e-13 Score=129.57 Aligned_cols=168 Identities=14% Similarity=0.094 Sum_probs=105.7
Q ss_pred eEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCc-ceEEEcCccCCCCCCCCCCCCCCCcEE
Q 035832 22 DVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTS-GSINIRGYNNDGEPNNSPEPLPPEKVG 100 (245)
Q Consensus 22 ~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~-G~i~~~g~~~~~~~~~~~~~~~~~~i~ 100 (245)
+++..|+. ..+++++++.+.+|+.++|+||||+|||||+++|++++++.. |.+.+++..... ....++
T Consensus 39 ~l~~i~G~--~~~l~~l~~~i~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~---------~~p~i~ 107 (604)
T 3k1j_A 39 LIDQVIGQ--EHAVEVIKTAANQKRHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDE---------NMPRIK 107 (604)
T ss_dssp HHHHCCSC--HHHHHHHHHHHHTTCCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCT---------TSCEEE
T ss_pred ccceEECc--hhhHhhccccccCCCEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccc---------cCCcEE
Confidence 33334542 468999999999999999999999999999999999999887 788887654421 134588
Q ss_pred EEecCCCC---------------------CCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCC
Q 035832 101 IVFQFPER---------------------YFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPH 159 (245)
Q Consensus 101 ~v~Q~~~~---------------------~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~ 159 (245)
++|+.... .+...++.+|+.............. . ......+.+|.-+. ......
T Consensus 108 ~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~-~---~~~~~~~L~G~~~~-~~~~~g 182 (604)
T 3k1j_A 108 TVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFID-A---TGAHAGALLGDVRH-DPFQSG 182 (604)
T ss_dssp EEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEE-C---TTCCHHHHHCEECC-CCC---
T ss_pred EEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEE-c---CCCCHHhcCceEEe-chhhcC
Confidence 88765310 1111222222222100000000000 0 00011122332221 123346
Q ss_pred CCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHh
Q 035832 160 SLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHL 206 (245)
Q Consensus 160 ~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l 206 (245)
.+|+|++|++..++....++.+|++||... |++..+..+++.|.+-
T Consensus 183 ~~~~g~~~~i~~g~~~~a~~gvL~LDEi~~-l~~~~q~~Ll~~Le~~ 228 (604)
T 3k1j_A 183 GLGTPAHERVEPGMIHRAHKGVLFIDEIAT-LSLKMQQSLLTAMQEK 228 (604)
T ss_dssp -CCCCGGGGEECCHHHHTTTSEEEETTGGG-SCHHHHHHHHHHHHHS
T ss_pred CccccccccccCceeeecCCCEEEEechhh-CCHHHHHHHHHHHHcC
Confidence 799999999999999999999999999988 8999999999999853
|
| >2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=99.24 E-value=7.5e-11 Score=98.37 Aligned_cols=58 Identities=17% Similarity=0.109 Sum_probs=43.1
Q ss_pred hCCCEEEEeCCCCCC--CHHHHHHHHHHHHHh-hc-CceEEEEecChhH--------HHhhccEEEEEeC
Q 035832 177 QVPDLLILDEPLAGL--DWKARADVVKLLKHL-KK-ELTILVVSHDLKE--------MAALVDHSWRMDM 234 (245)
Q Consensus 177 ~~p~llllDEPts~L--D~~~~~~i~~~l~~l-~~-~~tiii~tHd~~~--------~~~~~d~v~~l~~ 234 (245)
.+|+++++|+|++.+ |+....+++..|.++ ++ ++|||+++|.... +..+||.++.|+.
T Consensus 127 ~~~~~vviD~~~~l~~~~~~~~~~~l~~l~~~~~~~~~~vi~~~h~~~~~~~~~~~~~~~~~D~vi~L~~ 196 (247)
T 2dr3_A 127 INAKRVVVDSVTTLYINKPAMARSIILQLKRVLAGTGCTSIFVSQVSVGERGFGGPGVEHGVDGIIRLDL 196 (247)
T ss_dssp HTCCEEEEETSGGGTTTCGGGHHHHHHHHHHHHHHTTCEEEEEEECC----CCC-CCHHHHSSEEEEEEE
T ss_pred hCCCEEEECCchHhhcCCHHHHHHHHHHHHHHHHHCCCeEEEEecCCCCcccccccccceeEEEEEEEEE
Confidence 689999999999988 664455555555554 33 5899999998765 4678999999964
|
| >2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A | Back alignment and structure |
|---|
Probab=99.21 E-value=4e-12 Score=116.76 Aligned_cols=179 Identities=15% Similarity=0.121 Sum_probs=108.4
Q ss_pred cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcc-eEEEcCccCCCCCCCCCCCCCCCc-EEEEecCCCCC
Q 035832 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSG-SINIRGYNNDGEPNNSPEPLPPEK-VGIVFQFPERY 109 (245)
Q Consensus 32 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G-~i~~~g~~~~~~~~~~~~~~~~~~-i~~v~Q~~~~~ 109 (245)
.+.|+++..-+.+|+++.|.|++|+|||||+..+++...+..| .|.+.+..... . ....+ ++....
T Consensus 190 ~~~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s~---~----~l~~r~~~~~~~----- 257 (454)
T 2r6a_A 190 FTELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMSA---Q----QLVMRMLCAEGN----- 257 (454)
T ss_dssp CHHHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSCH---H----HHHHHHHHHHHT-----
T ss_pred cHHHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCCH---H----HHHHHHHHHHcC-----
Confidence 3568888888999999999999999999999999987655434 44443221100 0 00000 000000
Q ss_pred CCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh--hCCCEEEEeCC
Q 035832 110 FVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV--QVPDLLILDEP 187 (245)
Q Consensus 110 ~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~--~~p~llllDEP 187 (245)
+ . .+.+..+ ... .....++.++++.++..+...+ ....+|.++.+ +.|+.++ .+|+++++|++
T Consensus 258 ~---~-~~~l~~g------~l~--~~~~~~~~~a~~~l~~~~l~i~-d~~~~s~~~i~--~~~~~l~~~~~~~livID~l 322 (454)
T 2r6a_A 258 I---N-AQNLRTG------KLT--PEDWGKLTMAMGSLSNAGIYID-DTPSIRVSDIR--AKCRRLKQESGLGMIVIDYL 322 (454)
T ss_dssp C---C-HHHHHTS------CCC--HHHHHHHHHHHHHHHSSCEEEE-CCTTCCHHHHH--HHHHHHHTTTCCCEEEEECG
T ss_pred C---C-HHHHhcC------CCC--HHHHHHHHHHHHHHhcCCEEEE-CCCCCCHHHHH--HHHHHHHHHcCCCEEEEccH
Confidence 0 0 0111111 000 1111234445555544333223 35689999887 5666665 78999999999
Q ss_pred CCCCC--------HHHHHHHHHHHHHhhc--CceEEEEec---------C--hh--------HHHhhccEEEEEeCCeE
Q 035832 188 LAGLD--------WKARADVVKLLKHLKK--ELTILVVSH---------D--LK--------EMAALVDHSWRMDMGGF 237 (245)
Q Consensus 188 ts~LD--------~~~~~~i~~~l~~l~~--~~tiii~tH---------d--~~--------~~~~~~d~v~~l~~G~i 237 (245)
+.-.+ .....++.+.|+.+++ +++||+++| + +. .+...||.|++|..++.
T Consensus 323 ~~~~~~~~~~~~~~~~i~~i~~~Lk~lAke~~i~vi~~sql~r~~e~~~~~~p~lsdlr~Sg~ie~~aD~vi~l~r~~~ 401 (454)
T 2r6a_A 323 QLIQGSGRSKENRQQEVSEISRSLKALARELEVPVIALSQLSRSVEQRQDKRPMMSDIRESGSIEQDADIVAFLYRDDY 401 (454)
T ss_dssp GGSCCSCC----CHHHHHHHHHHHHHHHHHHTCCEEEEECCCTTSTTC---CCCTHHHHTTCSHHHHCSEEEEEEETTC
T ss_pred HHhccCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCcHHHhhccchhHhhCCEEEEEecccc
Confidence 98774 2344566677777753 689999999 3 22 46778999999986543
|
| >1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B* | Back alignment and structure |
|---|
Probab=99.20 E-value=5.3e-13 Score=108.14 Aligned_cols=36 Identities=11% Similarity=0.078 Sum_probs=33.1
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHH
Q 035832 168 RLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKH 205 (245)
Q Consensus 168 rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~ 205 (245)
.+.+|++++.+|+++++| ||++|..+.+++++.|.+
T Consensus 153 ~~~~a~~l~~~~~~~~ld--~Sald~~~v~~l~~~l~~ 188 (191)
T 1oix_A 153 PTDEARAFAEKNGLSFIE--TSALDSTNVEAAFQTILT 188 (191)
T ss_dssp CHHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCEEEE--EeCCCCCCHHHHHHHHHH
Confidence 467899999999999999 999999999999998865
|
| >2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ... | Back alignment and structure |
|---|
Probab=99.18 E-value=1.4e-11 Score=109.65 Aligned_cols=73 Identities=15% Similarity=0.135 Sum_probs=49.7
Q ss_pred HHHHHHHHHhhC--CCEEEEeCCCCCC----------CH---HHHHHHHHHHHHh----hc-CceEEEEecChh------
Q 035832 167 RRLALAIQLVQV--PDLLILDEPLAGL----------DW---KARADVVKLLKHL----KK-ELTILVVSHDLK------ 220 (245)
Q Consensus 167 qrv~iAral~~~--p~llllDEPts~L----------D~---~~~~~i~~~l~~l----~~-~~tiii~tHd~~------ 220 (245)
|-+.++++++.+ |+++++|||++.+ |+ ...+.+.+.++++ ++ ++|||+++|-..
T Consensus 126 ~~l~~~~~l~~~~~~~lIVIDsl~~l~~~~e~~~~~gd~~~~~q~r~~~~~l~~L~~~a~~~~~tVI~inh~~~~~~~~~ 205 (349)
T 2zr9_A 126 QALEIADMLVRSGALDIIVIDSVAALVPRAEIEGEMGDSHVGLQARLMSQALRKMTGALNNSGTTAIFINELREKIGVMF 205 (349)
T ss_dssp HHHHHHHHHHTTTCCSEEEEECGGGCCCHHHHTTC----CCCHHHHHHHHHHHHHHHHHHHHTCEEEEEEECC-------
T ss_pred HHHHHHHHHHhcCCCCEEEEcChHhhcchhhhccccccchhhHHHHHHHHHHHHHHHHHHHhCCEEEEEeccccccCccc
Confidence 445678888755 9999999999998 33 1222444555544 33 689999999643
Q ss_pred ----------HHHhhccEEEEEeCCeEEE
Q 035832 221 ----------EMAALVDHSWRMDMGGFLV 239 (245)
Q Consensus 221 ----------~~~~~~d~v~~l~~G~i~~ 239 (245)
.+..+||.++.++.++.+.
T Consensus 206 ~~p~~~~gg~~l~~~ad~~l~lrr~~~~k 234 (349)
T 2zr9_A 206 GSPETTTGGKALKFYASVRLDVRRIETLK 234 (349)
T ss_dssp ----CCSSHHHHHHHCSEEEEEEEEEEEC
T ss_pred CCCcccCCchHhhhccceEEEEEEeeeee
Confidence 2567899999998765543
|
| >3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum} | Back alignment and structure |
|---|
Probab=99.16 E-value=8.3e-12 Score=104.21 Aligned_cols=184 Identities=17% Similarity=0.074 Sum_probs=75.3
Q ss_pred ceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHh-CCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCC
Q 035832 33 DILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLA-GLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFV 111 (245)
Q Consensus 33 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~-Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~ 111 (245)
+..+++||++++|++++|+||||||||||+++|+ |++++ + ..+.+........ .....++|.|+++. .|.
T Consensus 15 ~~~~~~sl~v~~G~ii~l~Gp~GsGKSTl~~~L~~~~~~~----~-~~~~~~~~~~~~~---g~~~g~~~~~~~~~-~~~ 85 (231)
T 3lnc_A 15 QTQGPGSMLKSVGVILVLSSPSGCGKTTVANKLLEKQKNN----I-VKSVSVTTRAARK---GEKEGKDYYFVDRE-EFL 85 (231)
T ss_dssp -------CCEECCCEEEEECSCC----CHHHHHHC----C----E-EECCCEESSCCCT---TCCBTTTBEECCHH-HHH
T ss_pred cccCCCCcccCCCCEEEEECCCCCCHHHHHHHHHhcCCCC----c-ccccccCCCCCCc---cccCCCeEEEecHH-Hhh
Confidence 4579999999999999999999999999999999 99865 2 3333322211110 01123557777653 333
Q ss_pred cccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHH-HHH-HHHhhCCCEEEEeCCCC
Q 035832 112 ADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRL-ALA-IQLVQVPDLLILDEPLA 189 (245)
Q Consensus 112 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv-~iA-ral~~~p~llllDEPts 189 (245)
.++..+++.............. ...+.++++.-.. ...+-.+. -...-++++ .-+ ..++..|+..+++|++.
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~---~~~i~~~~~~~~~--vild~~~~-g~~~~~~~~~~~~~~v~v~~~~~~~l~~Rl~ 159 (231)
T 3lnc_A 86 RLCSNGEIIEHAEVFGNFYGVP---RKNLEDNVDKGVS--TLLVIDWQ-GAFKFMEMMREHVVSIFIMPPSMEELRRRLC 159 (231)
T ss_dssp HHHHTTCEEEEEEETTEEEEEE---CTTHHHHHHHTCE--EEEECCHH-HHHHHHHHSGGGEEEEEEECSCHHHHHHC--
T ss_pred hhhhcCceehhhhhccccCCCC---HHHHHHHHHcCCe--EEEEcCHH-HHHHHHHhcCCCeEEEEEECCcHHHHHHHHH
Confidence 3333333331100000000000 0012222322111 01111000 011113332 111 23456777888899999
Q ss_pred CCCHHHHHHHHHHHHHhh----c--CceEEEEecChhHHHhhccEEEE
Q 035832 190 GLDWKARADVVKLLKHLK----K--ELTILVVSHDLKEMAALVDHSWR 231 (245)
Q Consensus 190 ~LD~~~~~~i~~~l~~l~----~--~~tiii~tHd~~~~~~~~d~v~~ 231 (245)
+.|..+.+.+.+.|.... . ...+++++|+++.+...+++++.
T Consensus 160 ~R~~~~~~~i~~rl~~~~~~~~~~~~~d~vI~n~~~e~~~~~l~~~i~ 207 (231)
T 3lnc_A 160 GRRADDSEVVEARLKGAAFEISHCEAYDYVIVNEDIEETADRISNILR 207 (231)
T ss_dssp ------------CHHHHHHHHTTGGGSSEEEECSSHHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHHHhhhcCCeEEEECcCHHHHHHHHHHHHH
Confidence 999888888777665532 1 25788899999887766665543
|
| >3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X* | Back alignment and structure |
|---|
Probab=99.11 E-value=6.4e-11 Score=94.86 Aligned_cols=143 Identities=13% Similarity=0.066 Sum_probs=80.7
Q ss_pred eeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCc--cCCCCCCCCCCCCCCCcEEEEecCCCCCCCc-
Q 035832 36 NGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGY--NNDGEPNNSPEPLPPEKVGIVFQFPERYFVA- 112 (245)
Q Consensus 36 ~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~--~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~- 112 (245)
++++|++.+| +++|+||||||||||+++|++++.+..|.....+. ++-..............|.++||++...++.
T Consensus 18 ~~~~~~~~~g-~~~i~G~NGsGKStll~ai~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~v~~~f~~~~~~~~~~ 96 (182)
T 3kta_A 18 KKVVIPFSKG-FTAIVGANGSGKSNIGDAILFVLGGLSAKAMRASRISDLIFAGSKNEPPAKYAEVAIYFNNEDRGFPID 96 (182)
T ss_dssp SCEEEECCSS-EEEEEECTTSSHHHHHHHHHHHTTCCCTGGGTCSSGGGGBCCCC----CCSCEEEEEEEECTTCCSSSS
T ss_pred ccEEEecCCC-cEEEECCCCCCHHHHHHHHHHHHcCCcccccccccchheeecccccCCCCceEEEEEEEeCCCcccccC
Confidence 7899999999 99999999999999999999999887765432221 1100000000001245799999997533321
Q ss_pred ---ccHHHHHHh-cCCC-CCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCC
Q 035832 113 ---DNVLDEVIF-GWPR-QSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEP 187 (245)
Q Consensus 113 ---~tv~e~l~~-~~~~-~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEP 187 (245)
.++...+.- +... ...... .....+.++++.+++... + +.-++.||.+++.
T Consensus 97 ~~~~~i~r~~~~~~~~~~~i~g~~---~~~~~~~~~l~~~~l~~~--~--~~~~~qg~~~~l~----------------- 152 (182)
T 3kta_A 97 EDEVVIRRRVYPDGRSSYWLNGRR---ATRSEILDILTAAMISPD--G--YNIVLQGDITKFI----------------- 152 (182)
T ss_dssp SSEEEEEEEECTTSCEEEEETTEE---ECHHHHHHHHHHTTCCTT--C--TTEECTTCTTHHH-----------------
T ss_pred CcEEEEEEEEEeCCcEEEEECCeE---cCHHHHHHHHHHcCCCCC--C--CEEEEcccHHHHH-----------------
Confidence 222211100 0000 000000 012356778888898642 1 2356777777764
Q ss_pred CCCCCHHHHHHHHHHHHH
Q 035832 188 LAGLDWKARADVVKLLKH 205 (245)
Q Consensus 188 ts~LD~~~~~~i~~~l~~ 205 (245)
-++|..++++++.+..
T Consensus 153 --~~~~~~r~~~ld~~~g 168 (182)
T 3kta_A 153 --KMSPLERRLLIDDISG 168 (182)
T ss_dssp --HSCHHHHHHHHHHHHT
T ss_pred --hCCHHHHHHHHHHHHC
Confidence 2456666666665543
|
| >2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A | Back alignment and structure |
|---|
Probab=99.05 E-value=5.4e-11 Score=106.40 Aligned_cols=150 Identities=21% Similarity=0.212 Sum_probs=87.7
Q ss_pred CCCE-EEEECCCCCcHHHHHHHHhCCCC-----------CCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCC
Q 035832 44 EKSF-GLIFGRSGSGKTTLLQLLAGLSK-----------PTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFV 111 (245)
Q Consensus 44 ~Ge~-~~liG~nGsGKSTLl~~l~Gl~~-----------p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~ 111 (245)
.|-. ++|+|++|||||||++.|+|... |+.|.+.++|.++. .....|++.+.|.....
T Consensus 177 ~~~~~V~lvG~~naGKSTLln~L~~~~~~~~~~~~~T~d~~~~~i~~~g~~v~----------l~DT~G~i~~lp~~lve 246 (364)
T 2qtf_A 177 NNIPSIGIVGYTNSGKTSLFNSLTGLTQKVDTKLFTTMSPKRYAIPINNRKIM----------LVDTVGFIRGIPPQIVD 246 (364)
T ss_dssp --CCEEEEECBTTSSHHHHHHHHHCC-----------CCSCEEEEEETTEEEE----------EEECCCBCSSCCGGGHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHCCCccccCCcccccCCEEEEEEECCEEEE----------EEeCCCchhcCCHHHHH
Confidence 3444 99999999999999999999876 56788888775431 11234555554421111
Q ss_pred c-ccHHHHHHhc-----CCCCCCchhHHHHHHHHHHHHHHHcCCCCcc---CCCCCCCCChHHHHHHHHH----HHH-hh
Q 035832 112 A-DNVLDEVIFG-----WPRQSGSIQLKEYLALNLQRAINWVGLDGTS---LDKDPHSLSGGYKRRLALA----IQL-VQ 177 (245)
Q Consensus 112 ~-~tv~e~l~~~-----~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~---~~~~~~~LSgGqkqrv~iA----ral-~~ 177 (245)
. .+..+.+... .................+.++++.+++.+.. ...++..+|++++|++.++ +++ ..
T Consensus 247 ~f~~tl~~~~~aD~il~VvD~s~~~~~~~~~~~~~~~~L~~l~~~~~p~ilV~NK~Dl~~~~~~~~~~~~~~l~~~l~~~ 326 (364)
T 2qtf_A 247 AFFVTLSEAKYSDALILVIDSTFSENLLIETLQSSFEILREIGVSGKPILVTLNKIDKINGDLYKKLDLVEKLSKELYSP 326 (364)
T ss_dssp HHHHHHHGGGGSSEEEEEEETTSCHHHHHHHHHHHHHHHHHHTCCSCCEEEEEECGGGCCSCHHHHHHHHHHHHHHHCSC
T ss_pred HHHHHHHHHHhCCEEEEEEECCCCcchHHHHHHHHHHHHHHhCcCCCCEEEEEECCCCCCchHHHHHHHHHHHHHHhcCC
Confidence 0 1122222111 0000111000112223355677777765421 1345777898999988887 555 43
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhh
Q 035832 178 VPDLLILDEPLAGLDWKARADVVKLLKHLK 207 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~~~~i~~~l~~l~ 207 (245)
+|++ +|+|++|..+.+.+++.|.++.
T Consensus 327 ~~~~----~~~SA~~g~gi~~L~~~I~~~l 352 (364)
T 2qtf_A 327 IFDV----IPISALKRTNLELLRDKIYQLA 352 (364)
T ss_dssp EEEE----EECBTTTTBSHHHHHHHHHHHH
T ss_pred CCcE----EEEECCCCcCHHHHHHHHHHHh
Confidence 4454 8999999999999999998753
|
| >3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=99.03 E-value=1.3e-11 Score=104.96 Aligned_cols=54 Identities=22% Similarity=0.172 Sum_probs=35.7
Q ss_pred cceEEEEeE-EEECCCCccceeeeeeEEEcC---CCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 15 YSCLEVRDV-SYRPPGTQVDILNGVSFSLPE---KSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 15 ~~~l~~~~l-~~~y~~~~~~il~~vsl~i~~---Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+++|+ +++|++ ..++|+++||+|.+ |++++|+|++||||||+.++|++.+
T Consensus 15 ~~~l~~~~~~~~~~~~-~~~~l~~~~~~i~~~l~g~~i~l~G~~GsGKSTl~~~La~~l 72 (250)
T 3nwj_A 15 SALLETGSLLHSPFDE-EQQILKKKAEEVKPYLNGRSMYLVGMMGSGKTTVGKIMARSL 72 (250)
T ss_dssp ------------------CHHHHHHHHTTHHHHTTCCEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCceEEcceeeEEecC-cchhhhhhhhhhhhhcCCCEEEEECCCCCCHHHHHHHHHHhc
Confidence 358999999 999932 35799999999999 9999999999999999999999854
|
| >1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A | Back alignment and structure |
|---|
Probab=99.01 E-value=2.5e-13 Score=122.03 Aligned_cols=138 Identities=21% Similarity=0.132 Sum_probs=82.2
Q ss_pred ceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCc
Q 035832 33 DILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVA 112 (245)
Q Consensus 33 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~ 112 (245)
.+++++++.+++|++++|+||||||||||+++|+|. .+|.+..-. .. .. .....+|++||.+..++
T Consensus 157 ~~l~~~~~~i~~~~~i~l~G~~GsGKSTl~~~l~~~---~~g~~~~~~--~~---~~----~~~~~lg~~~q~~~~l~-- 222 (377)
T 1svm_A 157 DFLKCMVYNIPKKRYWLFKGPIDSGKTTLAAALLEL---CGGKALNVN--LP---LD----RLNFELGVAIDQFLVVF-- 222 (377)
T ss_dssp HHHHHHHHCCTTCCEEEEECSTTSSHHHHHHHHHHH---HCCEEECCS--SC---TT----THHHHHGGGTTCSCEEE--
T ss_pred HHHHhcccccCCCCEEEEECCCCCCHHHHHHHHHhh---cCCcEEEEe--cc---ch----hHHHHHHHhcchhHHHH--
Confidence 578999999999999999999999999999999985 467775511 10 00 00113666777652111
Q ss_pred ccHHHHHHhcCC--CCCCchhHHHHHHHHHHHHHH---HcC------------CCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 113 DNVLDEVIFGWP--RQSGSIQLKEYLALNLQRAIN---WVG------------LDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 113 ~tv~e~l~~~~~--~~~~~~~~~~~~~~~~~~~l~---~~~------------l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
+++..... +........ .....+.+.++ .+. +....++.....+++|++||+..+.++
T Consensus 223 ----dd~~~~~~~~r~l~~~~~~-~~~~~l~~~ldG~v~v~~~tn~~~~l~alf~pg~ld~~~~~l~~~~~~rl~~~~~l 297 (377)
T 1svm_A 223 ----EDVKGTGGESRDLPSGQGI-NNLDNLRDYLDGSVKVNLEKKHLNKRTQIFPPGIVTMNEYSVPKTLQARFVKQIDF 297 (377)
T ss_dssp ----TTCCCSTTTTTTCCCCSHH-HHHHTTHHHHHCSSCEEECCSSSCCEEECCCCEEEEECSCCCCHHHHTTEEEEEEC
T ss_pred ----HHHHHHHHHHhhccccCcc-hHHHHHHHHhcCCCeEeeccCchhhHHHhhcCcccChhHHhhcHHHHHHHhhhhcc
Confidence 11111100 000000000 00112223332 000 111123556778999999999998888
Q ss_pred hhCCCEEE-EeCCCC
Q 035832 176 VQVPDLLI-LDEPLA 189 (245)
Q Consensus 176 ~~~p~lll-lDEPts 189 (245)
+..|++++ ||+|+.
T Consensus 298 ~~~pDLliyLd~~~~ 312 (377)
T 1svm_A 298 RPKDYLKHCLERSEF 312 (377)
T ss_dssp CCCHHHHHHHHTCTH
T ss_pred CCCCCeEEEEeCCHH
Confidence 88998888 888875
|
| >2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A* | Back alignment and structure |
|---|
Probab=98.97 E-value=4.1e-11 Score=97.29 Aligned_cols=36 Identities=14% Similarity=0.108 Sum_probs=32.1
Q ss_pred HHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHh
Q 035832 169 LALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHL 206 (245)
Q Consensus 169 v~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l 206 (245)
...|++++.+|.++++| ||++|..+.+++++.|.+.
T Consensus 130 ~~~a~~l~~~~~~~~~d--~Sal~~~~i~~l~~~l~~~ 165 (199)
T 2f9l_A 130 TDEARAFAEKNNLSFIE--TSALDSTNVEEAFKNILTE 165 (199)
T ss_dssp HHHHHHHHHHTTCEEEE--CCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCeEEE--EeCCCCCCHHHHHHHHHHH
Confidence 35689999999999999 9999999999999988764
|
| >2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=98.94 E-value=5e-12 Score=117.37 Aligned_cols=133 Identities=22% Similarity=0.249 Sum_probs=86.4
Q ss_pred ceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCc
Q 035832 33 DILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVA 112 (245)
Q Consensus 33 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~ 112 (245)
.+++++++.+++| +.|+||||+|||||+++|++... .+.+.+++.++...... ...+++..+||......+.
T Consensus 54 ~~~~~lg~~ip~G--vLL~GppGtGKTtLaraIa~~~~--~~~i~i~g~~~~~~~~g----~~~~~v~~lfq~a~~~~p~ 125 (499)
T 2dhr_A 54 SRFHEMGARIPKG--VLLVGPPGVGKTHLARAVAGEAR--VPFITASGSDFVEMFVG----VGAARVRDLFETAKRHAPC 125 (499)
T ss_dssp GGTTTTSCCCCSE--EEEECSSSSSHHHHHHHHHHHTT--CCEEEEEGGGGTSSCTT----HHHHHHHHHTTTSSSSSSC
T ss_pred hhhhhccCCCCce--EEEECCCCCCHHHHHHHHHHHhC--CCEEEEehhHHHHhhhh----hHHHHHHHHHHHHHhcCCC
Confidence 4688999999999 89999999999999999999875 78999998776432110 1123567788876433445
Q ss_pred ccHHHHHH-hcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCC
Q 035832 113 DNVLDEVI-FGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLA 189 (245)
Q Consensus 113 ~tv~e~l~-~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts 189 (245)
..+.|++. ++............+....+.+++. .||||++|+..+++|...+|++ |||+..
T Consensus 126 il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~--------------~Ldg~~~~~~viviAatn~p~~--LD~aLl 187 (499)
T 2dhr_A 126 IVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLV--------------EMDGFEKDTAIVVMAATNRPDI--LDPALL 187 (499)
T ss_dssp EEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHH--------------HGGGCCSSCCCEEEECCSCGGG--SCTTTS
T ss_pred EEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHH--------------HhcccccCccEEEEEecCChhh--cCcccc
Confidence 56667773 3321111000001111223333332 3677888888888888888877 788765
|
| >2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=98.93 E-value=2.8e-10 Score=92.52 Aligned_cols=35 Identities=17% Similarity=0.138 Sum_probs=30.1
Q ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcc
Q 035832 40 FSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSG 74 (245)
Q Consensus 40 l~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G 74 (245)
+++.+|++++|+||||||||||+++|++++.|+.|
T Consensus 1 m~i~~g~~i~l~G~~GsGKSTl~~~L~~~~~~~~~ 35 (207)
T 2j41_A 1 MDNEKGLLIVLSGPSGVGKGTVRKRIFEDPSTSYK 35 (207)
T ss_dssp ---CCCCEEEEECSTTSCHHHHHHHHHHCTTCCEE
T ss_pred CCCCCCCEEEEECCCCCCHHHHHHHHHHhhCCCeE
Confidence 46889999999999999999999999999977666
|
| >2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B* | Back alignment and structure |
|---|
Probab=98.91 E-value=1.2e-09 Score=106.37 Aligned_cols=74 Identities=15% Similarity=0.150 Sum_probs=60.2
Q ss_pred CCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHhhcC-ceEEE-EecChhHHHhhccE
Q 035832 155 DKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLA-GLDWKARADVVKLLKHLKKE-LTILV-VSHDLKEMAALVDH 228 (245)
Q Consensus 155 ~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts-~LD~~~~~~i~~~l~~l~~~-~tiii-~tHd~~~~~~~~d~ 228 (245)
+..+.-+|.|+.+|..++++++.+++++|+|||.. +||......+++.+.....+ .+|++ +||+.+.+..+++.
T Consensus 185 ~~~I~v~T~G~l~r~l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~~iIl~SAT~~~~~l~~~~~~ 261 (773)
T 2xau_A 185 KTILKYMTDGMLLREAMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDLKIIIMSATLDAEKFQRYFND 261 (773)
T ss_dssp TCSEEEEEHHHHHHHHHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTCEEEEEESCSCCHHHHHHTTS
T ss_pred CCCEEEECHHHHHHHHhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCceEEEEeccccHHHHHHHhcC
Confidence 34566789999999999999999999999999996 99988777777666655444 57777 49999888887764
|
| >2e87_A Hypothetical protein PH1320; GTP-binding, GTPase, OBG, bundle, GDP, complex, structural G NPPSFA; HET: GDP; 2.35A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=98.87 E-value=6.1e-09 Score=92.57 Aligned_cols=125 Identities=22% Similarity=0.196 Sum_probs=82.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGW 123 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~ 123 (245)
..-.++++|++|+|||||++.++|... . ..+.+... ....++.+.+... .
T Consensus 166 ~~~~v~lvG~~gvGKSTLin~L~~~~~-~-----~~~~~~~t---------~~~~~~~~~~~~~-~-------------- 215 (357)
T 2e87_A 166 EIPTVVIAGHPNVGKSTLLKALTTAKP-E-----IASYPFTT---------RGINVGQFEDGYF-R-------------- 215 (357)
T ss_dssp SSCEEEEECSTTSSHHHHHHHHCSSCC-E-----EECCTTCS---------SCEEEEEEEETTE-E--------------
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCC-c-----cCCCCCee---------eceeEEEEEecCc-e--------------
Confidence 445799999999999999999998752 1 11111100 0122444443310 0
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEe-CCCCCCCHHHHHHHHHH
Q 035832 124 PRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILD-EPLAGLDWKARADVVKL 202 (245)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllD-EPts~LD~~~~~~i~~~ 202 (245)
+..++.... .+.++..+|+|++|++. +.+...++-++++| +|.+++|......+++.
T Consensus 216 --------------------~~l~Dt~G~-~~~~~~~~~~~~~~~~~-~~~~~ad~illV~D~s~~~~~~~~~~~~~~~~ 273 (357)
T 2e87_A 216 --------------------YQIIDTPGL-LDRPISERNEIEKQAIL-ALRYLGNLIIYIFDPSEHCGFPLEEQIHLFEE 273 (357)
T ss_dssp --------------------EEEEECTTT-SSSCSTTSCHHHHHHHH-GGGGTCSEEEEEECTTCTTSSCHHHHHHHHHH
T ss_pred --------------------EEEEeCCCc-cccchhhhhHHHHHHHH-HHHhcCCEEEEEEeCCccccCCHHHHHHHHHH
Confidence 000111222 24466789999998876 66666777889999 99999999998888887
Q ss_pred HHHhhcCceEEEEe--cChh
Q 035832 203 LKHLKKELTILVVS--HDLK 220 (245)
Q Consensus 203 l~~l~~~~tiii~t--Hd~~ 220 (245)
+.....+..+|++. ||+.
T Consensus 274 i~~~~~~~piilV~NK~Dl~ 293 (357)
T 2e87_A 274 VHGEFKDLPFLVVINKIDVA 293 (357)
T ss_dssp HHHHTTTSCEEEEECCTTTC
T ss_pred HHHhcCCCCEEEEEECcccC
Confidence 77754467777877 8874
|
| >3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=98.86 E-value=6.5e-10 Score=98.97 Aligned_cols=40 Identities=30% Similarity=0.346 Sum_probs=33.8
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceE-EEcC
Q 035832 41 SLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSI-NIRG 80 (245)
Q Consensus 41 ~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g 80 (245)
-+++|+++.|.||+|||||||+..+++...+..|.+ ++++
T Consensus 57 Gi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~ 97 (356)
T 3hr8_A 57 GYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDA 97 (356)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred CccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEec
Confidence 478999999999999999999999998877766765 4443
|
| >3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=6.8e-11 Score=96.52 Aligned_cols=60 Identities=22% Similarity=0.269 Sum_probs=46.4
Q ss_pred EeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceE--EEcCccC
Q 035832 21 RDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSI--NIRGYNN 83 (245)
Q Consensus 21 ~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i--~~~g~~~ 83 (245)
+|++..++. ..+.+..++..++|++++|+||||||||||+++|++.+. ..|.+ +++|.++
T Consensus 3 ~~~~~~~~~--~~~~~~~~~~~~~g~~i~l~G~sGsGKSTl~~~La~~l~-~~G~~~~~~d~d~~ 64 (200)
T 3uie_A 3 TNIKWHECS--VEKVDRQRLLDQKGCVIWVTGLSGSGKSTLACALNQMLY-QKGKLCYILDGDNV 64 (200)
T ss_dssp -------CC--CCHHHHHHHHTSCCEEEEEECSTTSSHHHHHHHHHHHHH-HTTCCEEEEEHHHH
T ss_pred CCCcccccc--cCHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHHH-hcCceEEEecCchh
Confidence 466666543 456788899899999999999999999999999999987 67988 8888765
|
| >1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.84 E-value=4.6e-10 Score=91.67 Aligned_cols=127 Identities=24% Similarity=0.157 Sum_probs=76.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQ 126 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~ 126 (245)
+++|+|||||||||+.++|+++ |...+++-++. ..+.. +
T Consensus 4 ~i~l~G~~GsGKST~~~~La~l-----g~~~id~d~~~--------------------------------~~~~~--~-- 42 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTDL-----GVPLVDADVVA--------------------------------REVVA--K-- 42 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHTT-----TCCEEEHHHHH--------------------------------HHTTC--S--
T ss_pred EEEEECCCCCCHHHHHHHHHHC-----CCcccchHHHH--------------------------------HHHcc--C--
Confidence 6899999999999999999983 54445432210 00000 0
Q ss_pred CCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHh
Q 035832 127 SGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHL 206 (245)
Q Consensus 127 ~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l 206 (245)
.. ..+.++.+.+|.... .|.|+.+|..+++.+..+|+.+..+ .+.++|..++.+.+.+...
T Consensus 43 -~~--------~~~~~i~~~~g~~~~--------~~~g~~~r~~l~~~~f~~~~~~~~l--~~~~~p~v~~~~~~~~~~~ 103 (206)
T 1jjv_A 43 -DS--------PLLSKIVEHFGAQIL--------TEQGELNRAALRERVFNHDEDKLWL--NNLLHPAIRERMKQKLAEQ 103 (206)
T ss_dssp -SC--------HHHHHHHHHHCTTCC--------------CHHHHHHHHHTCHHHHHHH--HHHHHHHHHHHHHHHHHTC
T ss_pred -Ch--------HHHHHHHHHhCHHHh--------ccCccccHHHHHHHHhCCHHHHHHH--HhccCHHHHHHHHHHHHhc
Confidence 00 012334445564321 3678889999998888887644333 3456777777766665543
Q ss_pred hcCceEEEEecChhHH--HhhccEEEEEeC
Q 035832 207 KKELTILVVSHDLKEM--AALVDHSWRMDM 234 (245)
Q Consensus 207 ~~~~tiii~tHd~~~~--~~~~d~v~~l~~ 234 (245)
. +.++|+.+|.+.+. ...||.+++++-
T Consensus 104 ~-~~~vv~~~~~l~e~~~~~~~d~vi~l~~ 132 (206)
T 1jjv_A 104 T-APYTLFVVPLLIENKLTALCDRILVVDV 132 (206)
T ss_dssp C-SSEEEEECTTTTTTTCGGGCSEEEEEEC
T ss_pred C-CCEEEEEechhhhcCcHhhCCEEEEEEC
Confidence 2 45788889987765 678999999863
|
| >4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis} | Back alignment and structure |
|---|
Probab=98.84 E-value=1.2e-10 Score=98.72 Aligned_cols=61 Identities=23% Similarity=0.162 Sum_probs=48.6
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHh---CCCCCCcceEE--------EcCccCCCCCCCCCCCCCCCcEEEEecCC
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLA---GLSKPTSGSIN--------IRGYNNDGEPNNSPEPLPPEKVGIVFQFP 106 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~---Gl~~p~~G~i~--------~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~ 106 (245)
++|++++|+|||||||||++++|+ |+..|++|.++ .+|.++..... ....++.++++||.+
T Consensus 25 ~~g~~I~I~G~~GsGKSTl~k~La~~Lg~~~~d~g~i~r~~~~~~~~~g~~~~~~~~---~~~~~~~~~~~~~~~ 96 (252)
T 4e22_A 25 AIAPVITVDGPSGAGKGTLCKALAESLNWRLLDSGAIYRVLALAALHHQVDISTEEA---LVPLAAHLDVRFVSQ 96 (252)
T ss_dssp TTSCEEEEECCTTSSHHHHHHHHHHHTTCEEEEHHHHHHHHHHHHHHTTCCSSSSTT---HHHHHHTCCEEEEEE
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHhcCCCcCCCCceehHhHHHHHHcCCCcccHHH---HHHHHHcCCEEEecC
Confidence 789999999999999999999999 99999999999 88877632110 111245688999764
|
| >3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A* | Back alignment and structure |
|---|
Probab=98.83 E-value=1.6e-08 Score=89.82 Aligned_cols=177 Identities=17% Similarity=0.169 Sum_probs=88.3
Q ss_pred ceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhC--CCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCC
Q 035832 33 DILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAG--LSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYF 110 (245)
Q Consensus 33 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G--l~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~ 110 (245)
.+|++++++++ .++|+|++|||||||++.|+| ++++.+|.++.....+.-..... .....+..++.+...+
T Consensus 25 ~~l~~i~~~lp---~I~vvG~~~sGKSSLln~l~g~~~lp~~~~~vT~~p~~i~~~~~~~----~~~~~~~~~~~~~~~~ 97 (360)
T 3t34_A 25 SALPTLWDSLP---AIAVVGGQSSGKSSVLESIVGKDFLPRGSGIVTRRPLVLQLQKIDD----GTREYAEFLHLPRKKF 97 (360)
T ss_dssp CCC----CCCC---EEEEECBTTSSHHHHHHHHHTSCCSCCCSSSCCCSCEEEEEEECSS----CSCCEEEETTSTTCCB
T ss_pred cccccccccCC---EEEEECCCCCcHHHHHHHHhCCCcCCCCCCcccCcceEEEEecCCC----cccceeeeecCCCccc
Confidence 58999999998 899999999999999999999 56777776643322211000000 0122344443332222
Q ss_pred Ccc-cHHHHH-----HhcCCCCC-CchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEE
Q 035832 111 VAD-NVLDEV-----IFGWPRQS-GSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLI 183 (245)
Q Consensus 111 ~~~-tv~e~l-----~~~~~~~~-~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~lll 183 (245)
... .+.+.+ ........ ......-.....-..-+..+++..........+.++.++|+..++++.+.+|+++|
T Consensus 98 ~~~~~v~~~i~~~~~~~~g~~~~~s~~~i~l~i~~~~~~~l~lvDtPG~~~~~~~~q~~~~~~~~~~~~~~~i~~~d~ii 177 (360)
T 3t34_A 98 TDFAAVRKEIQDETDRETGRSKAISSVPIHLSIYSPNVVNLTLIDLPGLTKVAVDGQSDSIVKDIENMVRSYIEKPNCII 177 (360)
T ss_dssp SCHHHHHHHHHHHHHHTSCTTCCCCCSCEEEEEEETTSCSEEEEECCCBCSSCCTTCCSSHHHHHHHHHHHHHHSSSEEE
T ss_pred CCHHHHHHHHHHHHHHhcCCCCCcccceEEEEEeCCCCCCeEEEECCCCCcCCcCCCchhHHHHHHHHHHHHhhcCCeEE
Confidence 111 111111 11000000 00000000000000001112333221112234577899999999999999999888
Q ss_pred EeCCCCCCCHHHHHHHHHHHHHhhc-C-ceEEEEec
Q 035832 184 LDEPLAGLDWKARADVVKLLKHLKK-E-LTILVVSH 217 (245)
Q Consensus 184 lDEPts~LD~~~~~~i~~~l~~l~~-~-~tiii~tH 217 (245)
+.-..+..|... ...+++++.+.. + .+|+++|.
T Consensus 178 lvv~~~~~~~~~-~~~~~l~~~~~~~~~~~i~V~nK 212 (360)
T 3t34_A 178 LAISPANQDLAT-SDAIKISREVDPSGDRTFGVLTK 212 (360)
T ss_dssp EEEEETTSCGGG-CHHHHHHHHSCTTCTTEEEEEEC
T ss_pred EEeecccCCcCC-HHHHHHHHHhcccCCCEEEEEeC
Confidence 874444455443 455667777653 4 57888776
|
| >2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E* | Back alignment and structure |
|---|
Probab=98.82 E-value=4.9e-09 Score=96.76 Aligned_cols=60 Identities=17% Similarity=0.271 Sum_probs=44.3
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeCC----------CCCCCHHHHHHHHHHHHHhh-----cCceEEEEecChhHH
Q 035832 163 GGYKRRLALAIQLVQVPDLLILDEP----------LAGLDWKARADVVKLLKHLK-----KELTILVVSHDLKEM 222 (245)
Q Consensus 163 gGqkqrv~iAral~~~p~llllDEP----------ts~LD~~~~~~i~~~l~~l~-----~~~tiii~tHd~~~~ 222 (245)
+++++|..+++|....|.+|++||+ ++|.|+...+.+.+++..+. .+..||.+||+++.+
T Consensus 93 ~~~~~r~lf~~A~~~~p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~L 167 (476)
T 2ce7_A 93 GAARVRDLFAQAKAHAPCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDIL 167 (476)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGS
T ss_pred cHHHHHHHHHHHHhcCCCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhh
Confidence 6778888999999999999999999 44777777777777776663 246899999998653
|
| >4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP} | Back alignment and structure |
|---|
Probab=98.74 E-value=2.9e-09 Score=86.79 Aligned_cols=77 Identities=18% Similarity=0.094 Sum_probs=48.5
Q ss_pred eeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCccc
Q 035832 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADN 114 (245)
Q Consensus 35 l~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~t 114 (245)
+-+-.++.++|++++|+||||||||||+++|++.+ |.+.+++.++.... ...+..+|++||++. .+..++
T Consensus 19 ~~~~~m~~~~g~~i~l~G~~GsGKSTl~~~L~~~~----g~~~i~~d~~~~~~-----~~~~~~~g~~~~~~~-~~~~~~ 88 (200)
T 4eun_A 19 YFQSMMTGEPTRHVVVMGVSGSGKTTIAHGVADET----GLEFAEADAFHSPE-----NIATMQRGIPLTDED-RWPWLR 88 (200)
T ss_dssp ---------CCCEEEEECCTTSCHHHHHHHHHHHH----CCEEEEGGGGSCHH-----HHHHHHTTCCCCHHH-HHHHHH
T ss_pred HHHhhhcCCCCcEEEEECCCCCCHHHHHHHHHHhh----CCeEEcccccccHH-----HHHHHhcCCCCCCcc-cccHHH
Confidence 33334667899999999999999999999999987 89999987753210 001124577888753 334456
Q ss_pred HHHHHHh
Q 035832 115 VLDEVIF 121 (245)
Q Consensus 115 v~e~l~~ 121 (245)
+.+++..
T Consensus 89 ~~~~~~~ 95 (200)
T 4eun_A 89 SLAEWMD 95 (200)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666543
|
| >1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A | Back alignment and structure |
|---|
Probab=98.73 E-value=1e-09 Score=96.45 Aligned_cols=85 Identities=19% Similarity=0.116 Sum_probs=59.6
Q ss_pred eeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCC----CCC-CCCCCCcEEEE-ecCCCC
Q 035832 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPN----NSP-EPLPPEKVGIV-FQFPER 108 (245)
Q Consensus 35 l~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~----~~~-~~~~~~~i~~v-~Q~~~~ 108 (245)
+++++|++++|++++++|+||+||||++..|++.+.+..|+|.+.+.|+..... ... ....+..++++ +|...
T Consensus 95 ~~~l~~~~~~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~D~~r~~a~~ql~~~~~~~~~~~l~vip~~~~~- 173 (320)
T 1zu4_A 95 KYRIDFKENRLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAADTFRAGATQQLEEWIKTRLNNKVDLVKANKLN- 173 (320)
T ss_dssp -CCCCCCTTSCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCSCHHHHHHHHHHHTTTSCTTEEEECCSSTT-
T ss_pred ccCccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHhccccCCceEEeCCCCC-
Confidence 378999999999999999999999999999999999999999998877632110 000 00014568999 66542
Q ss_pred CCCcccHHHHHH
Q 035832 109 YFVADNVLDEVI 120 (245)
Q Consensus 109 ~~~~~tv~e~l~ 120 (245)
..+..++++++.
T Consensus 174 ~~p~~~~~~~l~ 185 (320)
T 1zu4_A 174 ADPASVVFDAIK 185 (320)
T ss_dssp CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 333334455543
|
| >1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20 | Back alignment and structure |
|---|
Probab=98.68 E-value=4.7e-08 Score=86.50 Aligned_cols=48 Identities=17% Similarity=0.288 Sum_probs=37.5
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc----CceEEEEecChhHHHhh
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLKK----ELTILVVSHDLKEMAAL 225 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~----~~tiii~tHd~~~~~~~ 225 (245)
..|.+|++||+... |+.....+.+++.++.. +.++|++||+.+....+
T Consensus 124 ~~~~vlilDE~~~l-~~~~~~~L~~~~~~~~~~~~~~~~iI~~~~~~~~~~~l 175 (389)
T 1fnn_A 124 DLYMFLVLDDAFNL-APDILSTFIRLGQEADKLGAFRIALVIVGHNDAVLNNL 175 (389)
T ss_dssp TCCEEEEEETGGGS-CHHHHHHHHHHTTCHHHHSSCCEEEEEEESSTHHHHTS
T ss_pred CCeEEEEEECcccc-chHHHHHHHHHHHhCCCCCcCCEEEEEEECCchHHHHh
Confidence 45889999999876 98888888888876653 57899999998654433
|
| >3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.1e-08 Score=83.15 Aligned_cols=39 Identities=23% Similarity=0.077 Sum_probs=24.7
Q ss_pred ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 31 QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 31 ~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
...+++|+||++.+|++++|+||+||||||+.+.|++.+
T Consensus 11 ~~~~~~~~~~~~~~~~~i~l~G~~GsGKsTl~~~La~~l 49 (199)
T 3vaa_A 11 VDLGTENLYFQSNAMVRIFLTGYMGAGKTTLGKAFARKL 49 (199)
T ss_dssp -------------CCCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCCCceeEecCCCCEEEEEcCCCCCHHHHHHHHHHHc
Confidence 346899999999999999999999999999999999765
|
| >1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=98.65 E-value=6.7e-09 Score=83.29 Aligned_cols=35 Identities=14% Similarity=0.152 Sum_probs=30.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCC-CcceEEE
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGLSKP-TSGSINI 78 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-~~G~i~~ 78 (245)
+|++++|+||||||||||++.|++++++ ..|.|..
T Consensus 4 ~g~~i~i~GpsGsGKSTL~~~L~~~~~~~~~~~i~~ 39 (180)
T 1kgd_A 4 MRKTLVLLGAHGVGRRHIKNTLITKHPDRFAYPIPH 39 (180)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHCTTTEECCCCE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhCCccEEEeeec
Confidence 6999999999999999999999999874 5666654
|
| >2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A* | Back alignment and structure |
|---|
Probab=98.61 E-value=1.2e-08 Score=85.03 Aligned_cols=42 Identities=26% Similarity=0.131 Sum_probs=36.7
Q ss_pred eeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccC
Q 035832 38 VSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNN 83 (245)
Q Consensus 38 vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 83 (245)
-+.+.++|++++|.|+||||||||+++|+|+ .|+|.+.+++.
T Consensus 13 ~~~~~~~g~~i~i~G~~GsGKSTl~~~L~~~----~g~v~~~~~~~ 54 (230)
T 2vp4_A 13 KYAEGTQPFTVLIEGNIGSGKTTYLNHFEKY----KNDICLLTEPV 54 (230)
T ss_dssp CBTTTCCCEEEEEECSTTSCHHHHHHTTGGG----TTTEEEECCTH
T ss_pred ccCCCCCceEEEEECCCCCCHHHHHHHHHhc----cCCeEEEecCH
Confidence 3445689999999999999999999999998 78999988764
|
| >1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=98.58 E-value=7.6e-09 Score=84.44 Aligned_cols=43 Identities=26% Similarity=0.151 Sum_probs=38.4
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccC
Q 035832 41 SLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNN 83 (245)
Q Consensus 41 ~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 83 (245)
..++|++++|+|+||||||||++.|++++++..|.|.+.+.+.
T Consensus 18 ~~~~~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~d~ 60 (201)
T 1rz3_A 18 KTAGRLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHMDD 60 (201)
T ss_dssp CCSSSEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEGGG
T ss_pred ccCCCeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEeccCc
Confidence 3578999999999999999999999999988889998876654
|
| >4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori} | Back alignment and structure |
|---|
Probab=98.55 E-value=2.7e-07 Score=81.54 Aligned_cols=128 Identities=19% Similarity=0.195 Sum_probs=78.1
Q ss_pred ceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCc
Q 035832 33 DILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVA 112 (245)
Q Consensus 33 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~ 112 (245)
+-|+.+.--+.+|+++.|.|++|+|||||+..++....... ..+.|+.-+
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g-----------------------~~Vl~fSlE------- 83 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDD-----------------------RGVAVFSLE------- 83 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTT-----------------------CEEEEEESS-------
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcC-----------------------CeEEEEeCC-------
Confidence 35777666799999999999999999999988875432111 123332211
Q ss_pred ccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 035832 113 DNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLD 192 (245)
Q Consensus 113 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD 192 (245)
++. .....++......+++... . -..||.++++|+..|...+.+++++|.|+|...++
T Consensus 84 ms~------------------~ql~~Rlls~~~~v~~~~l-~---~g~Ls~~e~~~l~~a~~~l~~~~l~I~d~~~~si~ 141 (338)
T 4a1f_A 84 MSA------------------EQLALRALSDLTSINMHDL-E---SGRLDDDQWENLAKCFDHLSQKKLFFYDKSYVRIE 141 (338)
T ss_dssp SCH------------------HHHHHHHHHHHHCCCHHHH-H---HTCCCHHHHHHHHHHHHHHHHSCEEEECCTTCCHH
T ss_pred CCH------------------HHHHHHHHHHhhCCCHHHH-h---cCCCCHHHHHHHHHHHHHHhcCCeEEeCCCCCcHH
Confidence 111 1111122222222232221 1 13699999999999999999999999999865432
Q ss_pred HHHHHHHHHHHHHhh--c-CceEEEEec
Q 035832 193 WKARADVVKLLKHLK--K-ELTILVVSH 217 (245)
Q Consensus 193 ~~~~~~i~~~l~~l~--~-~~tiii~tH 217 (245)
++...+++++ . +..+|+|-|
T Consensus 142 -----~i~~~ir~l~~~~gg~~lIVIDy 164 (338)
T 4a1f_A 142 -----QIRLQLRKLKSQHKELGIAFIDY 164 (338)
T ss_dssp -----HHHHHHHHHHHHCTTEEEEEEEE
T ss_pred -----HHHHHHHHHHHhcCCCCEEEEec
Confidence 4444444443 2 356666653
|
| >3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=98.52 E-value=3.4e-08 Score=80.81 Aligned_cols=32 Identities=16% Similarity=0.316 Sum_probs=26.9
Q ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Q 035832 39 SFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 39 sl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
|+...+|++++|+||||||||||++.|++.++
T Consensus 13 ~~~~~~g~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 13 NLYFQGRKTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp ---CCSCCEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred cCCCCCCCEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34445899999999999999999999999875
|
| >2dy1_A Elongation factor G; translocation, GTP complex, structural genomics, NPPSFA; HET: GTP; 1.60A {Thermus thermophilus} SCOP: b.43.3.1 c.37.1.8 d.14.1.1 d.58.11.1 d.58.11.1 PDB: 1wdt_A* | Back alignment and structure |
|---|
Probab=98.52 E-value=8.5e-09 Score=98.90 Aligned_cols=134 Identities=15% Similarity=0.074 Sum_probs=75.5
Q ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCC--CcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHH
Q 035832 39 SFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKP--TSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVL 116 (245)
Q Consensus 39 sl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~ 116 (245)
|+++++|..++|+|++|||||||++.|++...+ ..|+| .+|..+..... ..+++.+++.+|... +...++.
T Consensus 3 s~~~~~~~~i~IiG~~gaGKTTLl~~L~~~~~~~~~~G~V-~~g~~~~d~~~----~e~~~giti~~~~~~--~~~~~~~ 75 (665)
T 2dy1_A 3 TEGGAMIRTVALVGHAGSGKTTLTEALLYKTGAKERRGRV-EEGTTTTDYTP----EAKLHRTTVRTGVAP--LLFRGHR 75 (665)
T ss_dssp ---CCCEEEEEEEESTTSSHHHHHHHHHHHTTSSSSCCCG-GGTCCSSCCSH----HHHHTTSCCSCEEEE--EEETTEE
T ss_pred CCccCCCcEEEEECCCCChHHHHHHHHHHhcCCCCcccee-cCCcccccCCH----HHHhcCCeEEecceE--EeeCCEE
Confidence 467789999999999999999999999976654 67887 55544322110 011234555555432 1111111
Q ss_pred HHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCC-CCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHH
Q 035832 117 DEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPH-SLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKA 195 (245)
Q Consensus 117 e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~-~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~ 195 (245)
.|+ +|.+.+ .++ ......+-..+..++++| |+.|+++.+
T Consensus 76 ~nl----------------------------------iDTpG~~~f~-----~~~~~~l~~ad~~ilVvD-~~~g~~~qt 115 (665)
T 2dy1_A 76 VFL----------------------------------LDAPGYGDFV-----GEIRGALEAADAALVAVS-AEAGVQVGT 115 (665)
T ss_dssp EEE----------------------------------EECCCSGGGH-----HHHHHHHHHCSEEEEEEE-TTTCSCHHH
T ss_pred EEE----------------------------------EeCCCccchH-----HHHHHHHhhcCcEEEEEc-CCcccchhH
Confidence 111 111110 010 112222235677788999 999999887
Q ss_pred HHHHHHHHHHhhcCceEEEEecChhHH
Q 035832 196 RADVVKLLKHLKKELTILVVSHDLKEM 222 (245)
Q Consensus 196 ~~~i~~~l~~l~~~~tiii~tHd~~~~ 222 (245)
.+ +++.+.. .+.++|++.|.++..
T Consensus 116 ~~-~~~~~~~--~~ip~ilv~NKiD~~ 139 (665)
T 2dy1_A 116 ER-AWTVAER--LGLPRMVVVTKLDKG 139 (665)
T ss_dssp HH-HHHHHHH--TTCCEEEEEECGGGC
T ss_pred HH-HHHHHHH--ccCCEEEEecCCchh
Confidence 63 3333332 357788889988753
|
| >3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=98.51 E-value=8.7e-09 Score=90.48 Aligned_cols=39 Identities=23% Similarity=0.257 Sum_probs=35.3
Q ss_pred cceeeeeeEEEcCCC------EEEEECCCCCcHHHHHHHHhCCCC
Q 035832 32 VDILNGVSFSLPEKS------FGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 32 ~~il~~vsl~i~~Ge------~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
...|++++..+.+++ ++||+||||||||||+++|++++.
T Consensus 73 ~~~l~~~~~~~l~~~~~~~p~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 73 RQTLQQATYQFLGKPEPKVPYIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp HHHHHHHHHHHHTCCCCCCCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHhccCCCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 457888888888877 999999999999999999999987
|
| >1ega_A Protein (GTP-binding protein ERA); GTPase, RNA-binding, RAS-like, hydrolase; 2.40A {Escherichia coli} SCOP: c.37.1.8 d.52.3.1 PDB: 1x1l_X 3ieu_A* 1x18_X | Back alignment and structure |
|---|
Probab=98.51 E-value=1.4e-08 Score=88.24 Aligned_cols=62 Identities=13% Similarity=0.155 Sum_probs=44.4
Q ss_pred CChHHHHHHHHHHHHh--hCCCEEEEeCCCCCCCHHH-HHHHHHHHHHhhc--C--ceEEEEecChhHHHhhccEE
Q 035832 161 LSGGYKRRLALAIQLV--QVPDLLILDEPLAGLDWKA-RADVVKLLKHLKK--E--LTILVVSHDLKEMAALVDHS 229 (245)
Q Consensus 161 LSgGqkqrv~iAral~--~~p~llllDEPts~LD~~~-~~~i~~~l~~l~~--~--~tiii~tHd~~~~~~~~d~v 229 (245)
+|.|++ .+++++. ..|.++++ +.+|... +..+.+.+.++.+ + ..+.+++|+-+.+..++|.+
T Consensus 101 ~~~~~~---~i~~~l~~~~~P~ilvl----NK~D~~~~~~~~~~~l~~l~~~~~~~~~i~iSA~~g~~v~~l~~~i 169 (301)
T 1ega_A 101 WTPDDE---MVLNKLREGKAPVILAV----NKVDNVQEKADLLPHLQFLASQMNFLDIVPISAETGLNVDTIAAIV 169 (301)
T ss_dssp CCHHHH---HHHHHHHSSSSCEEEEE----ESTTTCCCHHHHHHHHHHHHTTSCCSEEEECCTTTTTTHHHHHHHH
T ss_pred CCHHHH---HHHHHHHhcCCCEEEEE----ECcccCccHHHHHHHHHHHHHhcCcCceEEEECCCCCCHHHHHHHH
Confidence 898886 5566666 78889998 7899876 6778888887764 3 25666777766666655554
|
| >3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes} | Back alignment and structure |
|---|
Probab=98.50 E-value=4.8e-08 Score=80.12 Aligned_cols=35 Identities=23% Similarity=0.176 Sum_probs=30.1
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCC-CcceEE
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGLSKP-TSGSIN 77 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p-~~G~i~ 77 (245)
++|++++|+||||||||||++.|++.+++ ..+.+.
T Consensus 6 ~~g~~i~l~GpsGsGKsTl~~~L~~~~~~~~~~~~~ 41 (208)
T 3tau_A 6 ERGLLIVLSGPSGVGKGTVREAVFKDPETSFDYSIS 41 (208)
T ss_dssp CCCCEEEEECCTTSCHHHHHHHHHHSTTCCCEECCC
T ss_pred CCCcEEEEECcCCCCHHHHHHHHHhhCCCcEEEEEe
Confidence 58999999999999999999999999987 444443
|
| >1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A* | Back alignment and structure |
|---|
Probab=98.50 E-value=3.2e-08 Score=78.40 Aligned_cols=37 Identities=22% Similarity=0.234 Sum_probs=32.6
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccC
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNN 83 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 83 (245)
.+|++++|+|||||||||+++.|++.+ |.+.+++.++
T Consensus 6 ~~g~~i~l~G~~GsGKSTl~~~l~~~~----g~~~i~~d~~ 42 (175)
T 1knq_A 6 HDHHIYVLMGVSGSGKSAVASEVAHQL----HAAFLDGDFL 42 (175)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH----TCEEEEGGGG
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHhh----CcEEEeCccc
Confidence 469999999999999999999999875 8888887654
|
| >3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans} | Back alignment and structure |
|---|
Probab=98.49 E-value=1.7e-08 Score=94.67 Aligned_cols=43 Identities=26% Similarity=0.254 Sum_probs=38.6
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcc-eEE-EcCccC
Q 035832 41 SLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSG-SIN-IRGYNN 83 (245)
Q Consensus 41 ~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G-~i~-~~g~~~ 83 (245)
.+++|++++|+|+||||||||+++|+|++.|++| ++. ++|.++
T Consensus 365 ~~~~G~iI~LiG~sGSGKSTLar~La~~L~~~~G~~i~~lDgD~~ 409 (552)
T 3cr8_A 365 RERQGFTVFFTGLSGAGKSTLARALAARLMEMGGRCVTLLDGDIV 409 (552)
T ss_dssp GGGSCEEEEEEESSCHHHHHHHHHHHHHHHTTCSSCEEEESSHHH
T ss_pred ccccceEEEEECCCCChHHHHHHHHHHhhcccCCceEEEECCcHH
Confidence 5789999999999999999999999999999887 785 888664
|
| >3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A | Back alignment and structure |
|---|
Probab=98.47 E-value=3.5e-07 Score=83.35 Aligned_cols=35 Identities=29% Similarity=0.254 Sum_probs=30.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEE
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINI 78 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~ 78 (245)
++.+++++|||||||||++..|++.+.+..++|.+
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVll 130 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGL 130 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEE
Confidence 58899999999999999999999998776666655
|
| >3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=98.31 E-value=9.1e-07 Score=77.22 Aligned_cols=130 Identities=14% Similarity=0.100 Sum_probs=74.4
Q ss_pred ceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCc
Q 035832 33 DILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVA 112 (245)
Q Consensus 33 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~ 112 (245)
+.|+.+.--+.+|+++.|.|++|+|||||+..++.-.-- .| ..+.|+.-+
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~-~g----------------------~~vl~~slE------- 105 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSD-ND----------------------DVVNLHSLE------- 105 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHT-TT----------------------CEEEEEESS-------
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHH-cC----------------------CeEEEEECC-------
Confidence 457777767999999999999999999999887742100 00 123333211
Q ss_pred ccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 035832 113 DNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLD 192 (245)
Q Consensus 113 ~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD 192 (245)
++.. ....++......+++... .+.. ..||.++++|+..|...+.++++++.|+|...
T Consensus 106 ~s~~------------------~l~~R~~~~~~~i~~~~l-~~~~-~~l~~~~~~~l~~a~~~l~~~~i~i~d~~~~~-- 163 (315)
T 3bh0_A 106 MGKK------------------ENIKRLIVTAGSINAQKI-KAAR-RDFASEDWGKLSMAIGEISNSNINIFDKAGQS-- 163 (315)
T ss_dssp SCHH------------------HHHHHHHHHHTTCCHHHH-HSCH-HHHCSSCHHHHHHHHHHHHTSCEEEECCSCCB--
T ss_pred CCHH------------------HHHHHHHHHHcCCCHHHH-hcCC-CCCCHHHHHHHHHHHHHHhCCCEEEECCCCCC--
Confidence 1111 111111111111222111 1110 13888888888888888888888888888643
Q ss_pred HHHHHHHHHHHHHhhc--Cce--EEEEec
Q 035832 193 WKARADVVKLLKHLKK--ELT--ILVVSH 217 (245)
Q Consensus 193 ~~~~~~i~~~l~~l~~--~~t--iii~tH 217 (245)
..++...++++.+ +.. +|+|-|
T Consensus 164 ---~~~i~~~i~~l~~~~~~~~~lVVID~ 189 (315)
T 3bh0_A 164 ---VNYIWSKTRQTKRKNPGKRVIVMIDY 189 (315)
T ss_dssp ---HHHHHHHHHHHHHTSSSCCEEEEEEC
T ss_pred ---HHHHHHHHHHHHHhcCCCCeEEEEeC
Confidence 2345555555532 345 777755
|
| >2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=98.29 E-value=4.5e-08 Score=86.48 Aligned_cols=65 Identities=15% Similarity=0.143 Sum_probs=53.0
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNN 83 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 83 (245)
+++.+++.+.|. ...+++++++.+.+|.+++|+|++|||||||++.|++.+.+..|+|.+-+.+.
T Consensus 30 ~ie~~~~~~~~~--~~~~~~~l~~~~~~~~~i~i~G~~g~GKSTl~~~l~~~~~~~~~~v~v~~~d~ 94 (341)
T 2p67_A 30 LVESRHPRHQAL--STQLLDAIMPYCGNTLRLGVTGTPGAGKSTFLEAFGMLLIREGLKVAVIAVDP 94 (341)
T ss_dssp HHHCCCHHHHHH--HHHHHHHHGGGCSCSEEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEECC
T ss_pred HhhcCCchhhhH--HHHHHHhCCcccCCCEEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeecC
Confidence 355566666663 24578999999999999999999999999999999999888888887766554
|
| >1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=98.28 E-value=2.5e-07 Score=72.92 Aligned_cols=33 Identities=27% Similarity=0.221 Sum_probs=28.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRG 80 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 80 (245)
.|++++|+||||||||||+++|++.+.+ +++++
T Consensus 3 ~~~~i~l~G~~GsGKSTl~~~La~~l~~----~~id~ 35 (173)
T 1kag_A 3 EKRNIFLVGPMGAGKSTIGRQLAQQLNM----EFYDS 35 (173)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHTTC----EEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCC----CEEec
Confidence 4789999999999999999999998754 55654
|
| >1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A | Back alignment and structure |
|---|
Probab=98.26 E-value=6.8e-06 Score=72.53 Aligned_cols=28 Identities=25% Similarity=0.294 Sum_probs=25.5
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCC
Q 035832 41 SLPEKSFGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 41 ~i~~Ge~~~liG~nGsGKSTLl~~l~Gl 68 (245)
-+++|+++.|.||+|||||||+..++..
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~ 145 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVT 145 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHH
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999999988864
|
| >1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A* | Back alignment and structure |
|---|
Probab=98.26 E-value=4.8e-07 Score=70.49 Aligned_cols=31 Identities=32% Similarity=0.551 Sum_probs=25.5
Q ss_pred eeeeEEEcCCCEEEEECCCCCcHHHHHHHHhC
Q 035832 36 NGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 36 ~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G 67 (245)
++.++++.+| +.+|+|||||||||++.+|.-
T Consensus 15 ~~~~i~f~~g-~~~I~G~NGsGKStil~Ai~~ 45 (149)
T 1f2t_A 15 SDTVVEFKEG-INLIIGQNGSGKSSLLDAILV 45 (149)
T ss_dssp SSEEEECCSE-EEEEECCTTSSHHHHHHHHHH
T ss_pred cceEEEcCCC-eEEEECCCCCCHHHHHHHHHH
Confidence 4456666655 899999999999999999873
|
| >2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=98.24 E-value=1.8e-07 Score=82.40 Aligned_cols=29 Identities=21% Similarity=0.407 Sum_probs=25.5
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCC
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGLSKP 71 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p 71 (245)
..+..+.|.||+|+|||||++.+++...+
T Consensus 43 ~~~~~vli~G~~G~GKTtl~~~l~~~~~~ 71 (386)
T 2qby_A 43 EKPNNIFIYGLTGTGKTAVVKFVLSKLHK 71 (386)
T ss_dssp CCCCCEEEEECTTSSHHHHHHHHHHHHHH
T ss_pred CCCCeEEEECCCCCCHHHHHHHHHHHHHH
Confidence 45789999999999999999999987654
|
| >3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A | Back alignment and structure |
|---|
Probab=98.21 E-value=1.5e-07 Score=88.19 Aligned_cols=49 Identities=22% Similarity=0.202 Sum_probs=43.4
Q ss_pred cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCc
Q 035832 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGY 81 (245)
Q Consensus 32 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~ 81 (245)
..++.++++++ +|++++|+||||+|||||+++|++...+..|.|.+.|.
T Consensus 96 ~~~l~~~~~~~-~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~ 144 (543)
T 3m6a_A 96 YLAVQKLTKSL-KGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGV 144 (543)
T ss_dssp HHHHHHHSSSC-CSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC-
T ss_pred HHHHHHhcccC-CCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEeccc
Confidence 34678888888 89999999999999999999999999988899887764
|
| >1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A* | Back alignment and structure |
|---|
Probab=98.20 E-value=8.7e-08 Score=78.89 Aligned_cols=60 Identities=23% Similarity=0.150 Sum_probs=41.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC---CCCcceEEE--------cCccCCCCCCCCCCCCCCCcEEEEecCC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGLS---KPTSGSINI--------RGYNNDGEPNNSPEPLPPEKVGIVFQFP 106 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl~---~p~~G~i~~--------~g~~~~~~~~~~~~~~~~~~i~~v~Q~~ 106 (245)
.+.+++|+||+||||||+.++|++.+ .+++|++.. .|.++.... .....++++++++|++
T Consensus 4 ~~~~i~i~G~~GsGKSTl~~~L~~~~g~~~~d~g~i~~~~~~~~~~~g~~~~~~~---~~~~~~~~~~~~~~~~ 74 (227)
T 1cke_A 4 IAPVITIDGPSGAGKGTLCKAMAEALQWHLLDSGAIYRVLALAALHHHVDVASED---ALVPLASHLDVRFVST 74 (227)
T ss_dssp CSCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHHHHHHHHHHHHHTCCTTCHH---HHHHHHHTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCcceeehhhHHHHHcCCCccCHH---HHHHHHHhCceeeecc
Confidence 35789999999999999999998765 678898877 555432100 0001234678888864
|
| >3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A | Back alignment and structure |
|---|
Probab=98.19 E-value=1.9e-07 Score=83.69 Aligned_cols=51 Identities=20% Similarity=0.195 Sum_probs=46.2
Q ss_pred EEEEeEEEECCCCccceee--------------eeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 18 LEVRDVSYRPPGTQVDILN--------------GVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~--------------~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
+.++|+++.|+.. +..|+ |+++.+.+|+.++|+||+|+|||||++.|++..
T Consensus 134 i~Fe~ltp~yP~e-r~~Le~~~~~~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 134 ILFENLTPLHANS-RLRMERGNGSTEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp CCTTTSCEESCCS-BCCCCCTTCCTTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHHH
T ss_pred ceeccccccCCCC-ccccccCCCCcccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHHH
Confidence 6788999999864 56888 999999999999999999999999999998865
|
| >3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=98.18 E-value=2.3e-05 Score=66.98 Aligned_cols=70 Identities=14% Similarity=0.175 Sum_probs=43.9
Q ss_pred hHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH----------HHHHHHHHHHHHhhc-----CceEEEEecChhH----HH
Q 035832 163 GGYKRRLALAIQLVQVPDLLILDEPLAGLDW----------KARADVVKLLKHLKK-----ELTILVVSHDLKE----MA 223 (245)
Q Consensus 163 gGqkqrv~iAral~~~p~llllDEPts~LD~----------~~~~~i~~~l~~l~~-----~~tiii~tHd~~~----~~ 223 (245)
++++.|..++.+...+|.+|++||+.+-++. .....++..+..... ...||.+|++.+. +.
T Consensus 98 ~~~~~~~~~~~~~~~~~~vl~iDEid~l~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~l~~~l~ 177 (297)
T 3b9p_A 98 GEKLVRALFAVARHMQPSIIFIDEVDSLLSERSSSEHEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQELDEAAL 177 (297)
T ss_dssp HHHHHHHHHHHHHHTCSEEEEEETGGGTSBCC-----CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGGBCHHHH
T ss_pred HHHHHHHHHHHHHHcCCcEEEeccHHHhccccccCcchHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhhCCHHHH
Confidence 5667777788888889999999999776553 233345555554421 2467778887532 22
Q ss_pred hhccEEEEE
Q 035832 224 ALVDHSWRM 232 (245)
Q Consensus 224 ~~~d~v~~l 232 (245)
+-+++++.+
T Consensus 178 ~R~~~~i~~ 186 (297)
T 3b9p_A 178 RRFTKRVYV 186 (297)
T ss_dssp HHCCEEEEC
T ss_pred hhCCeEEEe
Confidence 345555554
|
| >2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A* | Back alignment and structure |
|---|
Probab=98.17 E-value=2.7e-07 Score=73.42 Aligned_cols=40 Identities=28% Similarity=0.234 Sum_probs=33.2
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCCcc--eEEEcCccC
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSG--SINIRGYNN 83 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G--~i~~~g~~~ 83 (245)
.+|++++|+|++||||||+.+.|++.+++ .| .+.+++..+
T Consensus 3 ~~g~~i~l~G~~GsGKST~~~~L~~~l~~-~g~~~i~~d~~~~ 44 (179)
T 2pez_A 3 MRGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI 44 (179)
T ss_dssp -CCEEEEEECCTTSSHHHHHHHHHHHHHH-TTCCEEEEEHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHHHHhh-CCCcEEEECChHH
Confidence 47999999999999999999999998765 56 667776654
|
| >2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=1.1e-05 Score=70.55 Aligned_cols=28 Identities=32% Similarity=0.462 Sum_probs=25.2
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCC
Q 035832 41 SLPEKSFGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 41 ~i~~Ge~~~liG~nGsGKSTLl~~l~Gl 68 (245)
-+++|+++.|.||+|||||||+..++..
T Consensus 103 Gl~~G~i~~i~G~~GsGKT~la~~la~~ 130 (324)
T 2z43_A 103 GIETRTMTEFFGEFGSGKTQLCHQLSVN 130 (324)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCCCcEEEEECCCCCCHhHHHHHHHHH
Confidence 5789999999999999999999888754
|
| >2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.16 E-value=3.7e-07 Score=80.95 Aligned_cols=42 Identities=14% Similarity=0.249 Sum_probs=36.6
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCC
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNND 84 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~ 84 (245)
+++.+++|+|++|||||||++.|+|.+.++.|+|.+.+.+..
T Consensus 72 ~~~~~v~lvG~pgaGKSTLln~L~~~~~~~~~~v~V~~~dp~ 113 (349)
T 2www_A 72 PLAFRVGLSGPPGAGKSTFIEYFGKMLTERGHKLSVLAVDPS 113 (349)
T ss_dssp CSCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEECCC-
T ss_pred cCceEEEEEcCCCCCHHHHHHHHHHHhhhcCCeEEEEeecCC
Confidence 347899999999999999999999999888899988776653
|
| >2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A* | Back alignment and structure |
|---|
Probab=98.16 E-value=8.2e-07 Score=72.22 Aligned_cols=34 Identities=29% Similarity=0.140 Sum_probs=29.2
Q ss_pred eeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Q 035832 37 GVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 37 ~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
++-=++++|++++|+|++|||||||++.|++.++
T Consensus 13 ~~~~~~~~~~~i~i~G~~GsGKSTl~~~L~~~~~ 46 (207)
T 2qt1_A 13 GLVPRGSKTFIIGISGVTNSGKTTLAKNLQKHLP 46 (207)
T ss_dssp -CCCCSCCCEEEEEEESTTSSHHHHHHHHHTTST
T ss_pred cccccCCCCeEEEEECCCCCCHHHHHHHHHHhcC
Confidence 3445678899999999999999999999999864
|
| >4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A | Back alignment and structure |
|---|
Probab=98.15 E-value=7.4e-07 Score=74.33 Aligned_cols=44 Identities=20% Similarity=0.163 Sum_probs=32.2
Q ss_pred eeeeeeEEEc---CCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEE
Q 035832 34 ILNGVSFSLP---EKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINI 78 (245)
Q Consensus 34 il~~vsl~i~---~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~ 78 (245)
-|.++||.+. +|.+++|.|++||||||+++.|+..+.+ .+.+..
T Consensus 12 ~~~~~~~~~~~~~~g~~i~i~G~~GsGKsT~~~~l~~~l~~-~~~~~~ 58 (229)
T 4eaq_A 12 DLGTENLYFQSNAMSAFITFEGPEGSGKTTVINEVYHRLVK-DYDVIM 58 (229)
T ss_dssp --------CCCCCCCEEEEEECCTTSCHHHHHHHHHHHHTT-TSCEEE
T ss_pred CccCCCeeEeecCCCeEEEEEcCCCCCHHHHHHHHHHHHhc-CCCcee
Confidence 3778888877 8999999999999999999999999887 666654
|
| >2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A | Back alignment and structure |
|---|
Probab=98.04 E-value=1e-06 Score=80.06 Aligned_cols=58 Identities=19% Similarity=0.145 Sum_probs=47.7
Q ss_pred EEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccC
Q 035832 20 VRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNN 83 (245)
Q Consensus 20 ~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 83 (245)
.+++++.|++. . ++++|+ +|++++++|+|||||||++..|++.+.+..|+|.+.+.|.
T Consensus 79 ~~~L~~~~~~~--~--~~i~l~--~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~D~ 136 (425)
T 2ffh_A 79 YEALKEALGGE--A--RLPVLK--DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAADT 136 (425)
T ss_dssp HHHHHHHTTSS--C--CCCCCC--SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCS
T ss_pred HHHHHHHhCCC--c--ccccCC--CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeeccc
Confidence 34566677542 1 678888 8999999999999999999999999999889998876554
|
| >1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A* | Back alignment and structure |
|---|
Probab=98.04 E-value=4.3e-07 Score=74.37 Aligned_cols=44 Identities=23% Similarity=0.106 Sum_probs=38.4
Q ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcc--eEEEcCccC
Q 035832 40 FSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSG--SINIRGYNN 83 (245)
Q Consensus 40 l~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G--~i~~~g~~~ 83 (245)
+.+.+|.+++|+|++||||||+.+.|++.+.|..| .+.+++..+
T Consensus 20 ~~~~~~~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~d~~ 65 (211)
T 1m7g_A 20 LRNQRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 65 (211)
T ss_dssp HHTSSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred ccCCCCCEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECChHH
Confidence 45678999999999999999999999999887788 888876554
|
| >2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A* | Back alignment and structure |
|---|
Probab=98.03 E-value=6.5e-06 Score=75.08 Aligned_cols=43 Identities=14% Similarity=0.239 Sum_probs=35.2
Q ss_pred hCCCEEEEeCCCCCCCH-HHHHHHHHHHHHhhc-CceEEEEecCh
Q 035832 177 QVPDLLILDEPLAGLDW-KARADVVKLLKHLKK-ELTILVVSHDL 219 (245)
Q Consensus 177 ~~p~llllDEPts~LD~-~~~~~i~~~l~~l~~-~~tiii~tHd~ 219 (245)
.+|++|++||+..-.+. ..++.++..+..+.+ ++.||++||+.
T Consensus 193 ~~~~vL~IDEi~~l~~~~~~q~~l~~~l~~l~~~~~~iIitt~~~ 237 (440)
T 2z4s_A 193 KKVDILLIDDVQFLIGKTGVQTELFHTFNELHDSGKQIVICSDRE 237 (440)
T ss_dssp TTCSEEEEECGGGGSSCHHHHHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred CCCCEEEEeCcccccCChHHHHHHHHHHHHHHHCCCeEEEEECCC
Confidence 48999999999876654 678889999988764 58899999973
|
| >3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A* | Back alignment and structure |
|---|
Probab=98.01 E-value=3e-06 Score=69.27 Aligned_cols=31 Identities=32% Similarity=0.566 Sum_probs=25.1
Q ss_pred eeeeeEEEcCCCEEEEECCCCCcHHHHHHHHh
Q 035832 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLA 66 (245)
Q Consensus 35 l~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~ 66 (245)
+.+.++++.+| +.+|+|||||||||++.+|.
T Consensus 14 ~~~~~i~f~~~-~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 14 HSDTVVEFKEG-INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp BSSEEEECCSE-EEEEECCTTSSHHHHHHHHH
T ss_pred ccceEEEeCCC-eEEEEcCCCCCHHHHHHHHH
Confidence 34556666654 99999999999999999885
|
| >1f6b_A SAR1; gtpases, N-terminal helix, Mg-containing complex, protein transport; HET: GDP; 1.70A {Cricetulus griseus} SCOP: c.37.1.8 PDB: 2fmx_A* 2fa9_A* 2gao_A* | Back alignment and structure |
|---|
Probab=97.97 E-value=1.4e-06 Score=70.26 Aligned_cols=42 Identities=24% Similarity=0.333 Sum_probs=31.1
Q ss_pred EEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhC
Q 035832 24 SYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 24 ~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G 67 (245)
++.|++- ..+++++||..++++ ++++|++|+|||||++.+.+
T Consensus 6 ~~~~~~~-~~~l~~~~~~~~~~k-i~lvG~~~vGKSsLi~~l~~ 47 (198)
T 1f6b_A 6 DWIYSGF-SSVLQFLGLYKKTGK-LVFLGLDNAGKTTLLHMLKD 47 (198)
T ss_dssp --------CHHHHHHTCTTCCEE-EEEEEETTSSHHHHHHHHSC
T ss_pred HHHHHHH-HHHHHHhhccCCCcE-EEEECCCCCCHHHHHHHHhc
Confidence 3456543 468999999988885 67999999999999999987
|
| >1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F | Back alignment and structure |
|---|
Probab=97.94 E-value=9.3e-07 Score=76.69 Aligned_cols=59 Identities=22% Similarity=0.137 Sum_probs=47.2
Q ss_pred EEeEEEECCCCccceeee-eeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccC
Q 035832 20 VRDVSYRPPGTQVDILNG-VSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNN 83 (245)
Q Consensus 20 ~~~l~~~y~~~~~~il~~-vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 83 (245)
.+++.+.|++. .++ ++|+.+ |++++++|+||+||||++..|++.+.+..|+|.+.+.|.
T Consensus 77 ~~~l~~~~~~~----~~~~i~~~~~-~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D~ 136 (297)
T 1j8m_F 77 YDELSNLFGGD----KEPKVIPDKI-PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGADV 136 (297)
T ss_dssp HHHHHHHTTCS----CCCCCSCSSS-SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECCC
T ss_pred HHHHHHHhccc----cccccccCCC-CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecCC
Confidence 44556667542 156 888876 999999999999999999999999988888888866553
|
| >2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus} | Back alignment and structure |
|---|
Probab=97.93 E-value=3.9e-05 Score=69.86 Aligned_cols=172 Identities=19% Similarity=0.077 Sum_probs=90.5
Q ss_pred ceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCc
Q 035832 33 DILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVA 112 (245)
Q Consensus 33 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~ 112 (245)
+.|+.+.--+.+|+++.|.|++|+|||||+..++.-.....| ..+.|+.-+- ..
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g----------------------~~vl~~slE~----~~ 241 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEG----------------------VGVGIYSLEM----PA 241 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTC----------------------CCEEEEESSS----CH
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCC----------------------CeEEEEECCC----CH
Confidence 356666656899999999999999999999888764322112 1123322110 01
Q ss_pred ccHHHHHH---hcCCCC-CCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh--hCCCEEEEeC
Q 035832 113 DNVLDEVI---FGWPRQ-SGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV--QVPDLLILDE 186 (245)
Q Consensus 113 ~tv~e~l~---~~~~~~-~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~--~~p~llllDE 186 (245)
..+...+. .+.... ............++.++++.+.-.....+. ...+|..+- .+.++.+. .+|+++++|.
T Consensus 242 ~~l~~R~~~~~~~i~~~~l~~g~l~~~~~~~~~~a~~~l~~~~l~i~d-~~~~s~~~l--~~~~~~l~~~~~~~lIvID~ 318 (444)
T 2q6t_A 242 AQLTLRMMCSEARIDMNRVRLGQLTDRDFSRLVDVASRLSEAPIYIDD-TPDLTLMEV--RARARRLVSQNQVGLIIIDY 318 (444)
T ss_dssp HHHHHHHHHHHTTCCTTTCCGGGCCHHHHHHHHHHHHHHHTSCEEEEC-CTTCBHHHH--HHHHHHHHHHSCCCEEEEEC
T ss_pred HHHHHHHHHHHcCCCHHHHhCCCCCHHHHHHHHHHHHHHhcCCEEEEC-CCCCCHHHH--HHHHHHHHHHcCCCEEEEcC
Confidence 11111111 111100 000000011112233333333222222222 345676654 34555555 5899999999
Q ss_pred CCCCCCH----------HHHHHHHHHHHHhhc--CceEEEEecChh-------------------HHHhhccEEEEEe
Q 035832 187 PLAGLDW----------KARADVVKLLKHLKK--ELTILVVSHDLK-------------------EMAALVDHSWRMD 233 (245)
Q Consensus 187 Pts~LD~----------~~~~~i~~~l~~l~~--~~tiii~tHd~~-------------------~~~~~~d~v~~l~ 233 (245)
.+.-... ....++...|+.+++ +++||+++|--. .+...||.|++|.
T Consensus 319 l~~~~~~~~~~~~~~r~~~i~~i~~~Lk~lAke~~v~vi~lsql~r~~e~r~~~~p~l~dlr~Sg~ie~~aD~vi~L~ 396 (444)
T 2q6t_A 319 LQLMSGPGSGKSGENRQQEIAAISRGLKALARELGIPIIALSQLSRAVEARPNKRPMLSDLRESGSIEQDADLVMFIY 396 (444)
T ss_dssp GGGCBCC-------CHHHHHHHHHHHHHHHHHHHTSCEEEEEECCGGGGSSSSCSCCGGGGGGGCTTGGGCSEEEEEE
T ss_pred hhhcCCCcCCCCCCCHHHHHHHHHHHHHHHHHHhCCeEEEEecCCcccccCCCCCCChHHhcchhHHHHhCCEEEEEe
Confidence 8754432 122355566666653 589999998211 2466799999985
|
| >1mky_A Probable GTP-binding protein ENGA; GTPase, DER, KH-domain, tandem G-domains, ligand binding protein; HET: GDP; 1.90A {Thermotoga maritima} SCOP: c.37.1.8 c.37.1.8 d.52.5.1 | Back alignment and structure |
|---|
Probab=97.92 E-value=6.4e-06 Score=74.99 Aligned_cols=161 Identities=14% Similarity=0.055 Sum_probs=77.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC------------CCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCccc
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLSK------------PTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADN 114 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~~------------p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~t 114 (245)
.++|+|+||||||||++.|+|... |.+|.+.++|.++.-... . -.++..++.+|... .+...+
T Consensus 182 kvaivG~~gvGKSTLln~l~g~~~~~v~~~~gtT~d~~~~~i~~~g~~~~l~Dt---~-G~~~~~~~~~~~~e-~~~~~~ 256 (439)
T 1mky_A 182 KVAIVGRPNVGKSTLFNAILNKERALVSPIPGTTRDPVDDEVFIDGRKYVFVDT---A-GLRRKSRVEPRTVE-KYSNYR 256 (439)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSTTEEECCCC------CCEEEEETTEEEEESSC---S-CC-----------C-CSCCHH
T ss_pred eEEEECCCCCCHHHHHHHHhCCcccccCCCCCCcCCceEEEEEECCEEEEEEEC---C-CCccccccchhhHH-HHHHHH
Confidence 689999999999999999999864 668999999875421110 0 01233444555543 333344
Q ss_pred HHHHHHhc------CCCCCCchhHHHHHHHHHHHHHHHcCCCCc----cCCCCC-CCCChHHHHHHHHHHHHh--hCCCE
Q 035832 115 VLDEVIFG------WPRQSGSIQLKEYLALNLQRAINWVGLDGT----SLDKDP-HSLSGGYKRRLALAIQLV--QVPDL 181 (245)
Q Consensus 115 v~e~l~~~------~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----~~~~~~-~~LSgGqkqrv~iAral~--~~p~l 181 (245)
..+++..+ ....... . . ....+.+.+...+..-. ..|... ..-+.-+- .-.+++.+. ...++
T Consensus 257 ~~~~i~~ad~vllv~d~~~~~-~-~--~~~~i~~~l~~~~~~~ilv~NK~Dl~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 331 (439)
T 1mky_A 257 VVDSIEKADVVVIVLDATQGI-T-R--QDQRMAGLMERRGRASVVVFNKWDLVVHREKRYDEF-TKLFREKLYFIDYSPL 331 (439)
T ss_dssp HHHHHHHCSEEEEEEETTTCC-C-H--HHHHHHHHHHHTTCEEEEEEECGGGSTTGGGCHHHH-HHHHHHHCGGGTTSCE
T ss_pred HHHHHhhCCEEEEEEeCCCCC-C-H--HHHHHHHHHHHcCCCEEEEEECccCCCchhhHHHHH-HHHHHHHhccCCCCcE
Confidence 45554432 0100011 1 1 11234445555543210 012110 01111111 113444443 34455
Q ss_pred EEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhH
Q 035832 182 LILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKE 221 (245)
Q Consensus 182 lllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~ 221 (245)
+ ++|++.-.+..++++.+.+.....+.-+.|+.++.
T Consensus 332 ~----~~SA~~g~gv~~l~~~i~~~~~~~~~~i~t~~ln~ 367 (439)
T 1mky_A 332 I----FTSADKGWNIDRMIDAMNLAYASYTTKVPSSAINS 367 (439)
T ss_dssp E----ECBTTTTBSHHHHHHHHHHHHHHHTCCCCHHHHHH
T ss_pred E----EEECCCCCCHHHHHHHHHHHHHhhcccCCHHHHHH
Confidence 4 49999999999998888765432222335565544
|
| >3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.91 E-value=3.8e-06 Score=69.86 Aligned_cols=152 Identities=17% Similarity=0.104 Sum_probs=79.6
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHH
Q 035832 41 SLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVI 120 (245)
Q Consensus 41 ~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~ 120 (245)
.+.+|+.+++.||+||||||++.++........| ....++++++.|. .....++.+++.
T Consensus 72 ~i~~g~~~~i~g~TGsGKTt~~~~~~~~~~~~~~--------------------~~~~~~~l~~~p~-~~la~q~~~~~~ 130 (235)
T 3llm_A 72 AISQNSVVIIRGATGCGKTTQVPQFILDDFIQND--------------------RAAECNIVVTQPR-RISAVSVAERVA 130 (235)
T ss_dssp HHHHCSEEEEECCTTSSHHHHHHHHHHHHHHHTT--------------------CGGGCEEEEEESS-HHHHHHHHHHHH
T ss_pred HHhcCCEEEEEeCCCCCcHHhHHHHHhcchhhcC--------------------CCCceEEEEeccc-hHHHHHHHHHHH
Confidence 3467999999999999999998876421110000 0134677888774 233445666665
Q ss_pred hcCCCCCCchhHHHHHHHHHHHHHHHcCCCCcc--CCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCC-CCCHHHHH
Q 035832 121 FGWPRQSGSIQLKEYLALNLQRAINWVGLDGTS--LDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLA-GLDWKARA 197 (245)
Q Consensus 121 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~--~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts-~LD~~~~~ 197 (245)
..+........ .. ........ .+..+--.+.|.-.+.. ...+.+.+++++||.-. ++|.....
T Consensus 131 ~~~~~~~~~~~-g~-----------~~~~~~~~~~~~~~Ivv~Tpg~l~~~l--~~~l~~~~~lVlDEah~~~~~~~~~~ 196 (235)
T 3llm_A 131 FERGEEPGKSC-GY-----------SVRFESILPRPHASIMFCTVGVLLRKL--EAGIRGISHVIVDEIHERDINTDFLL 196 (235)
T ss_dssp HTTTCCTTSSE-EE-----------EETTEEECCCSSSEEEEEEHHHHHHHH--HHCCTTCCEEEECCTTSCCHHHHHHH
T ss_pred HHhccccCceE-EE-----------eechhhccCCCCCeEEEECHHHHHHHH--HhhhcCCcEEEEECCccCCcchHHHH
Confidence 43211100000 00 00000000 00111123456655553 34688999999999976 67776664
Q ss_pred HHHHHHHHhhcC-ceEEE-EecChhHHHhhcc
Q 035832 198 DVVKLLKHLKKE-LTILV-VSHDLKEMAALVD 227 (245)
Q Consensus 198 ~i~~~l~~l~~~-~tiii-~tHd~~~~~~~~d 227 (245)
..++.+.....+ .++++ +|.+.+...++.+
T Consensus 197 ~~l~~i~~~~~~~~~il~SAT~~~~~~~~~~~ 228 (235)
T 3llm_A 197 VVLRDVVQAYPEVRIVLMSATIDTSMFCEYFF 228 (235)
T ss_dssp HHHHHHHHHCTTSEEEEEECSSCCHHHHHHTT
T ss_pred HHHHHHHhhCCCCeEEEEecCCCHHHHHHHcC
Confidence 444444433333 34433 4566665555544
|
| >2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A | Back alignment and structure |
|---|
Probab=97.91 E-value=7e-06 Score=64.63 Aligned_cols=28 Identities=36% Similarity=0.469 Sum_probs=23.8
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
++|..++|+|++|+|||||++.++|...
T Consensus 2 ~~~~ki~ivG~~g~GKStLl~~l~~~~~ 29 (172)
T 2gj8_A 2 SHGMKVVIAGRPNAGKSSLLNALAGREA 29 (172)
T ss_dssp --CEEEEEEESTTSSHHHHHHHHHTSCC
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhCCCc
Confidence 3678899999999999999999998753
|
| >2qag_A Septin-2, protein NEDD5; cell cycle, cell division, GTP-binding, nucleotide-binding, phosphorylation, acetylation, alternative splicing, coiled coil; HET: GDP GTP; 4.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.91 E-value=9.6e-07 Score=78.60 Aligned_cols=54 Identities=22% Similarity=0.296 Sum_probs=36.7
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEE
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINI 78 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~ 78 (245)
.+.+.|++..|+. +.++++++|+| +|+|++|+|||||++.|.|...+..+.+..
T Consensus 17 ~v~~~~l~~~~~~--k~~~~~~~~~I------~vvG~~g~GKSTLln~L~~~~~~~~~~~~~ 70 (361)
T 2qag_A 17 YVGFANLPNQVHR--KSVKKGFEFTL------MVVGESGLGKSTLINSLFLTDLYPERVIPG 70 (361)
T ss_dssp ----CCHHHHHHT--HHHHHCCEECE------EECCCTTSCHHHHHHHHTTCCC--------
T ss_pred eEEeccchHHhCC--eeecCCCCEEE------EEEcCCCCCHHHHHHHHhCCCCCCCCcccC
Confidence 4888888888853 45789999987 899999999999999999887665555433
|
| >1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.89 E-value=5.8e-06 Score=66.10 Aligned_cols=32 Identities=31% Similarity=0.411 Sum_probs=26.5
Q ss_pred eeeEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Q 035832 37 GVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 37 ~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl 68 (245)
++|++..+|.+++|+|++||||||+.+.|+..
T Consensus 2 ~~~~~~~~~~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 2 PGSMEQPKGINILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp ----CCCSSCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CcCcCCCCCCEEEEECCCCCCHHHHHHHHHHh
Confidence 57888999999999999999999999999865
|
| >2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=97.87 E-value=2.6e-06 Score=68.02 Aligned_cols=41 Identities=27% Similarity=0.309 Sum_probs=33.5
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceE-EEcCc
Q 035832 41 SLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSI-NIRGY 81 (245)
Q Consensus 41 ~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i-~~~g~ 81 (245)
...+|.+++|+|++||||||+.+.|+..+.+..+.+ .+++.
T Consensus 9 ~~~~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~~d 50 (186)
T 2yvu_A 9 CIEKGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLDGD 50 (186)
T ss_dssp CCSCCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEHH
T ss_pred ccCCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEeeHH
Confidence 345799999999999999999999999887766666 44443
|
| >1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B* | Back alignment and structure |
|---|
Probab=97.86 E-value=8.8e-06 Score=65.03 Aligned_cols=34 Identities=32% Similarity=0.442 Sum_probs=20.0
Q ss_pred ceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhC
Q 035832 33 DILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 33 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G 67 (245)
.+++++++..++. .++++|++|+|||||++.+.+
T Consensus 12 ~~l~~~~~~~~~~-ki~~vG~~~vGKSsli~~l~~ 45 (190)
T 1m2o_B 12 DVLASLGLWNKHG-KLLFLGLDNAGKTTLLHMLKN 45 (190)
T ss_dssp ------------C-EEEEEESTTSSHHHHHHHHHH
T ss_pred HHHHHhhccCCcc-EEEEECCCCCCHHHHHHHHhc
Confidence 3689999998877 567999999999999999987
|
| >2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax} | Back alignment and structure |
|---|
Probab=97.83 E-value=7.8e-06 Score=66.36 Aligned_cols=30 Identities=23% Similarity=0.259 Sum_probs=26.4
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Q 035832 41 SLPEKSFGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 41 ~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
...+|.+++|+||||||||||.+.|+..++
T Consensus 8 ~~~~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 8 HMARIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp -CCCCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred ccccCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 456899999999999999999999988764
|
| >3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B* | Back alignment and structure |
|---|
Probab=97.82 E-value=2e-05 Score=70.06 Aligned_cols=43 Identities=14% Similarity=0.294 Sum_probs=32.7
Q ss_pred EEEEeEEEE-CCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHh
Q 035832 18 LEVRDVSYR-PPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLA 66 (245)
Q Consensus 18 l~~~~l~~~-y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~ 66 (245)
..+..|+.. |. .+++..+++.+| +.+|+|||||||||+|.+|.
T Consensus 3 M~l~~L~l~nFr-----~~~~~~i~f~~g-l~vi~G~NGaGKT~ileAI~ 46 (371)
T 3auy_A 3 MILKEIRMNNFK-----SHVNSRIKFEKG-IVAIIGENGSGKSSIFEAVF 46 (371)
T ss_dssp EEEEEEEEEEET-----TEEEEEEECCSE-EEEEEECTTSSHHHHHHHHH
T ss_pred cEEeEEEEEccc-----cccceEEecCCC-eEEEECCCCCCHHHHHHHHH
Confidence 345566543 32 257788888775 89999999999999999986
|
| >1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00026 Score=62.79 Aligned_cols=27 Identities=37% Similarity=0.438 Sum_probs=24.4
Q ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCC
Q 035832 42 LPEKSFGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 42 i~~Ge~~~liG~nGsGKSTLl~~l~Gl 68 (245)
+++|+++.|.||+|+|||||...++..
T Consensus 60 l~~G~ii~I~G~pGsGKTtLal~la~~ 86 (356)
T 1u94_A 60 LPMGRIVEIYGPESSGKTTLTLQVIAA 86 (356)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 789999999999999999999877653
|
| >2ohf_A Protein OLA1, GTP-binding protein 9; ATPase, GTPase, P-loop, OBG-like, hydrolase; HET: ACP; 2.70A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.77 E-value=1.4e-05 Score=71.92 Aligned_cols=41 Identities=17% Similarity=0.216 Sum_probs=33.7
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCC-----------CCCCcceEEEcCc
Q 035832 41 SLPEKSFGLIFGRSGSGKTTLLQLLAGL-----------SKPTSGSINIRGY 81 (245)
Q Consensus 41 ~i~~Ge~~~liG~nGsGKSTLl~~l~Gl-----------~~p~~G~i~~~g~ 81 (245)
.+..|..++|+|+||+|||||++.|+|. ..|..|.+.+.+.
T Consensus 18 ~i~~~~kvgIVG~pnvGKSTL~n~Ltg~~~~~~~~p~tTi~p~~g~v~v~~~ 69 (396)
T 2ohf_A 18 RFGTSLKIGIVGLPNVGKSTFFNVLTNSQASAENFPFCTIDPNESRVPVPDE 69 (396)
T ss_dssp CSSSCCCEEEECCSSSSHHHHHHHHHC-------------CCSEEEEECCCH
T ss_pred hccCCCEEEEECCCCCCHHHHHHHHHCCCccccCCCccccCceeEEEEECCc
Confidence 4567888999999999999999999998 6677888877653
|
| >2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=97.77 E-value=8.6e-06 Score=65.78 Aligned_cols=22 Identities=32% Similarity=0.377 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
+++|+|+|||||||+.+.|+++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~~ 24 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFREL 24 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHHHC
Confidence 6899999999999999999993
|
| >2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A* | Back alignment and structure |
|---|
Probab=97.75 E-value=2.7e-05 Score=60.52 Aligned_cols=24 Identities=25% Similarity=0.371 Sum_probs=21.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
.++|+|++|+|||||++.++|...
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~~~~ 28 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTGENV 28 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHCCSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCe
Confidence 589999999999999999999754
|
| >1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=97.75 E-value=8.1e-07 Score=77.96 Aligned_cols=47 Identities=23% Similarity=0.253 Sum_probs=40.3
Q ss_pred cceeeeeeEEEcCCCE--EEEECCCCCcHHHHHHHHhCCCCCCcceEEE
Q 035832 32 VDILNGVSFSLPEKSF--GLIFGRSGSGKTTLLQLLAGLSKPTSGSINI 78 (245)
Q Consensus 32 ~~il~~vsl~i~~Ge~--~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~ 78 (245)
..+++.++..++.|++ +.+.||+|+||||+++++++.+.+..+.+.+
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~ 79 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIYGKNYSNMV 79 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHHTTSHHHHE
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHcCCCccceE
Confidence 4588999999999999 9999999999999999999988766654433
|
| >2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=97.72 E-value=1.7e-05 Score=62.60 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.++|+|++|+|||||++.++|.
T Consensus 9 ~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 9 EIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999985
|
| >3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti} | Back alignment and structure |
|---|
Probab=97.71 E-value=8.4e-06 Score=65.89 Aligned_cols=33 Identities=30% Similarity=0.363 Sum_probs=26.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCc
Q 035832 45 KSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGY 81 (245)
Q Consensus 45 Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~ 81 (245)
..+++|+|++||||||+.+.|++.+ |...+++.
T Consensus 18 ~~~I~l~G~~GsGKSTla~~L~~~l----g~~~i~~d 50 (202)
T 3t61_A 18 PGSIVVMGVSGSGKSSVGEAIAEAC----GYPFIEGD 50 (202)
T ss_dssp SSCEEEECSTTSCHHHHHHHHHHHH----TCCEEEGG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHh----CCEEEeCC
Confidence 5689999999999999999998765 45556543
|
| >1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A* | Back alignment and structure |
|---|
Probab=97.70 E-value=2.1e-05 Score=63.82 Aligned_cols=43 Identities=16% Similarity=0.230 Sum_probs=32.8
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChh
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLK 220 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~ 220 (245)
.+|.++++||.-. +|+.....+.+.+.+......+|++|++..
T Consensus 125 ~~~~vlviDe~~~-l~~~~~~~l~~~l~~~~~~~~~i~~t~~~~ 167 (250)
T 1njg_A 125 GRFKVYLIDEVHM-LSRHSFNALLKTLEEPPEHVKFLLATTDPQ 167 (250)
T ss_dssp SSSEEEEEETGGG-SCHHHHHHHHHHHHSCCTTEEEEEEESCGG
T ss_pred CCceEEEEECccc-ccHHHHHHHHHHHhcCCCceEEEEEeCChH
Confidence 4678999999755 788888888777765444567888888765
|
| >2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B* | Back alignment and structure |
|---|
Probab=97.67 E-value=2.2e-05 Score=62.16 Aligned_cols=26 Identities=50% Similarity=0.576 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLSKPT 72 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~~p~ 72 (245)
.++|+|++|+|||||++.++|...+.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~~~~~~ 29 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMKTKKSD 29 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTCC----
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCcc
Confidence 37899999999999999999975443
|
| >2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A* | Back alignment and structure |
|---|
Probab=97.66 E-value=5.2e-06 Score=73.61 Aligned_cols=37 Identities=24% Similarity=0.403 Sum_probs=33.6
Q ss_pred ceeeeeeEEEcCCCE--EEEECCCCCcHHHHHHHHhCCC
Q 035832 33 DILNGVSFSLPEKSF--GLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 33 ~il~~vsl~i~~Ge~--~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.+++.+++.+++|++ ++|+|++||||||+.++|++.+
T Consensus 10 ~il~~l~~~i~~g~~~~i~l~G~~G~GKTTl~~~la~~l 48 (359)
T 2ga8_A 10 DVLQLLDNRIEDNYRVCVILVGSPGSGKSTIAEELCQII 48 (359)
T ss_dssp HHHHHHHHTTTTCSCEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCeeEEEEECCCCCcHHHHHHHHHHHh
Confidence 478889999999999 9999999999999999999864
|
| >1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.61 E-value=1.2e-05 Score=66.75 Aligned_cols=35 Identities=23% Similarity=0.286 Sum_probs=28.5
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhC---CCCCCcceEE
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAG---LSKPTSGSIN 77 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~G---l~~p~~G~i~ 77 (245)
.+|.+++|+|++||||||+.+.|++ +..++.|.+.
T Consensus 14 ~~~~~i~i~G~~gsGKst~~~~l~~~lg~~~~d~d~~~ 51 (236)
T 1q3t_A 14 MKTIQIAIDGPASSGKSTVAKIIAKDFGFTYLDTGAMY 51 (236)
T ss_dssp CCCCEEEEECSSCSSHHHHHHHHHHHHCCEEEEHHHHH
T ss_pred cCCcEEEEECCCCCCHHHHHHHHHHHcCCceecCCCee
Confidence 5789999999999999999999985 4445556554
|
| >2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae} | Back alignment and structure |
|---|
Probab=97.60 E-value=1.3e-05 Score=67.52 Aligned_cols=46 Identities=26% Similarity=0.239 Sum_probs=35.5
Q ss_pred eeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccC
Q 035832 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNN 83 (245)
Q Consensus 35 l~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 83 (245)
+++.+ ...++.++.|+|++||||||+.+.|+..+. .+.+.+++..+
T Consensus 23 ~~~~~-~~~~~~~i~l~G~~GsGKSTla~~L~~~l~--~~~~~~~~D~~ 68 (253)
T 2p5t_B 23 TRGKK-SSKQPIAILLGGQSGAGKTTIHRIKQKEFQ--GNIVIIDGDSF 68 (253)
T ss_dssp HTTCC-CCSSCEEEEEESCGGGTTHHHHHHHHHHTT--TCCEEECGGGG
T ss_pred HccCC-cccCCeEEEEECCCCCCHHHHHHHHHHhcC--CCcEEEecHHH
Confidence 33333 567789999999999999999999998764 35677776544
|
| >1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A | Back alignment and structure |
|---|
Probab=97.59 E-value=1.9e-05 Score=63.13 Aligned_cols=38 Identities=29% Similarity=0.232 Sum_probs=29.4
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCC---cceEEEcCcc
Q 035832 45 KSFGLIFGRSGSGKTTLLQLLAGLSKPT---SGSINIRGYN 82 (245)
Q Consensus 45 Ge~~~liG~nGsGKSTLl~~l~Gl~~p~---~G~i~~~g~~ 82 (245)
-.+++|+|++|||||||++.|.+.+++. -|.|..++.+
T Consensus 6 ~~~i~i~G~sGsGKTTl~~~l~~~l~~~g~~v~~i~~~~~~ 46 (174)
T 1np6_A 6 IPLLAFAAWSGTGKTTLLKKLIPALCARGIRPGLIKHTHHD 46 (174)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC-
T ss_pred ceEEEEEeCCCCCHHHHHHHHHHhccccCCceeEEeeCCCc
Confidence 3589999999999999999999876543 4677765543
|
| >3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=97.59 E-value=2.8e-05 Score=61.62 Aligned_cols=25 Identities=28% Similarity=0.299 Sum_probs=22.2
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhC
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~G 67 (245)
.+|.+++|+|++||||||+.+.|+.
T Consensus 2 ~~g~~I~l~G~~GsGKST~~~~La~ 26 (186)
T 3cm0_A 2 DVGQAVIFLGPPGAGKGTQASRLAQ 26 (186)
T ss_dssp -CEEEEEEECCTTSCHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHH
Confidence 4678999999999999999999983
|
| >4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A | Back alignment and structure |
|---|
Probab=97.53 E-value=2.9e-05 Score=69.42 Aligned_cols=58 Identities=17% Similarity=0.188 Sum_probs=44.7
Q ss_pred hCCCEEEEeCCCCCCC---HHHHHHHHHHHHHhhc-CceEEEEecChhHHH------------hhccEEEEEeC
Q 035832 177 QVPDLLILDEPLAGLD---WKARADVVKLLKHLKK-ELTILVVSHDLKEMA------------ALVDHSWRMDM 234 (245)
Q Consensus 177 ~~p~llllDEPts~LD---~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~------------~~~d~v~~l~~ 234 (245)
..|.++++||-=.-++ +.....+.+++++.++ +..++++||++..+. ..|+..+++..
T Consensus 261 ~~~~~i~iDEa~~~~~~~~~~~~~~l~~~~~~~Rk~g~~~~~~tQ~~~d~~~~~~~~~~~~il~n~~~~i~l~~ 334 (392)
T 4ag6_A 261 RERTVLVVDEAWMLVDPQTPQAIAFLRDTSKRIRKYNGSLIVISQNVIDFLAPEVQRYGQALLDNPTYKLLLAQ 334 (392)
T ss_dssp CTTCEEEETTGGGGCCTTCTHHHHHHHHHHHHGGGGTCEEEEEESCGGGGGSTTTHHHHHHHHHSCSEEEECSC
T ss_pred CccEEEEEecHHHHhCcCchHHHHHHHHHHHHhhhhCeEEEEEcCCHHHhhChhhHHHHHHHHHhhhhhheeCC
Confidence 3588999999988884 6777888888888865 689999999987653 34566666653
|
| >3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A* | Back alignment and structure |
|---|
Probab=97.52 E-value=1.7e-05 Score=66.33 Aligned_cols=33 Identities=24% Similarity=0.353 Sum_probs=26.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHh---CCCCCCcceE
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLA---GLSKPTSGSI 76 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~---Gl~~p~~G~i 76 (245)
..-+++|.||+||||||+.+.|+ |+...+.|.+
T Consensus 8 ~~~~i~i~G~~GsGKsTla~~la~~lg~~~~d~g~~ 43 (233)
T 3r20_A 8 GSLVVAVDGPAGTGKSSVSRGLARALGARYLDTGAM 43 (233)
T ss_dssp -CCEEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCCCcccCCcH
Confidence 34589999999999999999999 6655666665
|
| >1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=97.48 E-value=3.3e-05 Score=64.73 Aligned_cols=46 Identities=28% Similarity=0.409 Sum_probs=31.1
Q ss_pred eeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccC
Q 035832 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNN 83 (245)
Q Consensus 34 il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 83 (245)
.++++++.+++| +.|.||+|+|||||+++|++..... -+.+++.++
T Consensus 36 ~~~~~~~~~~~~--vll~G~~GtGKT~la~~la~~~~~~--~~~i~~~~~ 81 (257)
T 1lv7_A 36 RFQKLGGKIPKG--VLMVGPPGTGKTLLAKAIAGEAKVP--FFTISGSDF 81 (257)
T ss_dssp GC-----CCCCE--EEEECCTTSCHHHHHHHHHHHHTCC--EEEECSCSS
T ss_pred HHHHcCCCCCCe--EEEECcCCCCHHHHHHHHHHHcCCC--EEEEeHHHH
Confidence 355666666666 8899999999999999999876422 466665544
|
| >1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A* | Back alignment and structure |
|---|
Probab=97.48 E-value=6.6e-05 Score=58.99 Aligned_cols=26 Identities=19% Similarity=0.346 Sum_probs=23.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Q 035832 45 KSFGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 45 Ge~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
|.++.|+|++||||||+.+.|+..+.
T Consensus 3 ~~~i~l~G~~GsGKST~a~~La~~l~ 28 (178)
T 1qhx_A 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 57899999999999999999997654
|
| >3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A* | Back alignment and structure |
|---|
Probab=97.46 E-value=5.8e-05 Score=58.72 Aligned_cols=23 Identities=17% Similarity=0.044 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
+++|+|++||||||+.+.|+..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l 25 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKEL 25 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998653
|
| >3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.45 E-value=7.7e-05 Score=61.79 Aligned_cols=29 Identities=24% Similarity=0.356 Sum_probs=24.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCcce
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLSKPTSGS 75 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~~p~~G~ 75 (245)
.++|+|++|+|||||++.|+|...+.++.
T Consensus 31 ~i~lvG~~g~GKStlin~l~g~~~~~~~~ 59 (239)
T 3lxx_A 31 RIVLVGKTGAGKSATGNSILGRKVFHSGT 59 (239)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSCCSCC--
T ss_pred EEEEECCCCCCHHHHHHHHcCCCcCccCC
Confidence 37899999999999999999987765553
|
| >1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A | Back alignment and structure |
|---|
Probab=97.38 E-value=9.5e-05 Score=58.49 Aligned_cols=26 Identities=27% Similarity=0.252 Sum_probs=22.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
+|.+++|.|++||||||+.+.|+-.+
T Consensus 2 ~~~~I~i~G~~GsGKsT~~~~L~~~l 27 (192)
T 1kht_A 2 KNKVVVVTGVPGVGSTTSSQLAMDNL 27 (192)
T ss_dssp -CCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 36789999999999999999997643
|
| >3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=97.37 E-value=0.0028 Score=57.65 Aligned_cols=27 Identities=37% Similarity=0.440 Sum_probs=24.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
++.+++++|++||||||++..|+..+.
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~ 125 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQ 125 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHH
Confidence 478999999999999999999987664
|
| >2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus} | Back alignment and structure |
|---|
Probab=97.35 E-value=8.9e-05 Score=58.86 Aligned_cols=26 Identities=35% Similarity=0.387 Sum_probs=22.9
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCC
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.++.++.|+|++||||||+.+.|+..
T Consensus 3 ~~~~~I~l~G~~GsGKST~~~~L~~~ 28 (193)
T 2rhm_A 3 QTPALIIVTGHPATGKTTLSQALATG 28 (193)
T ss_dssp SCCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHH
Confidence 46788999999999999999999753
|
| >3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A | Back alignment and structure |
|---|
Probab=97.33 E-value=0.00011 Score=56.94 Aligned_cols=19 Identities=47% Similarity=0.649 Sum_probs=18.2
Q ss_pred EEEEECCCCCcHHHHHHHH
Q 035832 47 FGLIFGRSGSGKTTLLQLL 65 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l 65 (245)
+++|.||+||||||+.+.|
T Consensus 3 ~I~l~G~~GsGKsT~a~~L 21 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL 21 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHH
Confidence 6899999999999999999
|
| >3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A | Back alignment and structure |
|---|
Probab=97.33 E-value=7.1e-05 Score=59.12 Aligned_cols=24 Identities=42% Similarity=0.307 Sum_probs=22.2
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHh
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLA 66 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~ 66 (245)
.++.++.|+|++||||||+.+.|+
T Consensus 9 ~~~~~i~i~G~~GsGKst~~~~l~ 32 (180)
T 3iij_A 9 MLLPNILLTGTPGVGKTTLGKELA 32 (180)
T ss_dssp CCCCCEEEECSTTSSHHHHHHHHH
T ss_pred ccCCeEEEEeCCCCCHHHHHHHHH
Confidence 467889999999999999999998
|
| >1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00012 Score=59.69 Aligned_cols=32 Identities=31% Similarity=0.357 Sum_probs=25.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRG 80 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 80 (245)
.+-+++|.|++||||||+.+.|+.+ |...++.
T Consensus 3 ~~~~I~i~G~~GSGKST~~~~L~~l-----g~~~id~ 34 (218)
T 1vht_A 3 LRYIVALTGGIGSGKSTVANAFADL-----GINVIDA 34 (218)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHT-----TCEEEEH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHc-----CCEEEEc
Confidence 4568999999999999999999973 4455543
|
| >1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00013 Score=58.94 Aligned_cols=22 Identities=45% Similarity=0.504 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
+.|+||||||||||++.|..-.
T Consensus 4 IVi~GPSG~GK~Tl~~~L~~~~ 25 (186)
T 1ex7_A 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6799999999999999987544
|
| >2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A* | Back alignment and structure |
|---|
Probab=97.27 E-value=0.00016 Score=57.99 Aligned_cols=27 Identities=22% Similarity=0.105 Sum_probs=24.5
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.+|-+++|.|+.||||||+.+.|+..+
T Consensus 2 ~~~~~I~l~G~~GsGKsT~~~~L~~~l 28 (204)
T 2v54_A 2 SRGALIVFEGLDKSGKTTQCMNIMESI 28 (204)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHHHTS
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 368899999999999999999999876
|
| >1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=2.8e-05 Score=62.98 Aligned_cols=30 Identities=33% Similarity=0.475 Sum_probs=24.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCcceE
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLSKPTSGSI 76 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i 76 (245)
+++|.|++||||||+++.|+..+.+....+
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~~~g~~v 31 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFRAAGRSV 31 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHHEEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhcCCeE
Confidence 689999999999999999998775433333
|
| >2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00014 Score=58.08 Aligned_cols=23 Identities=30% Similarity=0.367 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
+++|.|++||||||+.+.|+..+
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l 24 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKL 24 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCccCHHHHHHHHHHhc
Confidence 58999999999999999999744
|
| >2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00013 Score=61.42 Aligned_cols=23 Identities=35% Similarity=0.499 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
+++|+||+|||||||.+.|++.+
T Consensus 3 li~I~G~~GSGKSTla~~La~~~ 25 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQET 25 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHhcC
Confidence 68999999999999999998654
|
| >1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2 | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00013 Score=57.45 Aligned_cols=23 Identities=39% Similarity=0.336 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
+++|+|++||||||+.+.|+..+
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l 28 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDL 28 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHc
Confidence 58899999999999999998643
|
| >3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=97.25 E-value=0.00017 Score=57.07 Aligned_cols=25 Identities=32% Similarity=0.352 Sum_probs=21.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.+.++.|+|++||||||+.+.|+..
T Consensus 4 ~~~~i~l~G~~GsGKst~a~~La~~ 28 (185)
T 3trf_A 4 NLTNIYLIGLMGAGKTSVGSQLAKL 28 (185)
T ss_dssp -CCEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHH
Confidence 3678999999999999999999754
|
| >1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.24 E-value=0.00012 Score=58.53 Aligned_cols=31 Identities=32% Similarity=0.267 Sum_probs=25.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcC
Q 035832 45 KSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRG 80 (245)
Q Consensus 45 Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 80 (245)
..+++|+|++||||||+.+.|+.. |-..++.
T Consensus 8 ~~~I~i~G~~GsGKST~~~~La~~-----g~~~id~ 38 (203)
T 1uf9_A 8 PIIIGITGNIGSGKSTVAALLRSW-----GYPVLDL 38 (203)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHHT-----TCCEEEH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHC-----CCEEEcc
Confidence 457999999999999999999975 6556654
|
| >3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0 | Back alignment and structure |
|---|
Probab=97.22 E-value=0.0003 Score=55.69 Aligned_cols=34 Identities=32% Similarity=0.484 Sum_probs=24.1
Q ss_pred EEEEECCCCCcHHHHHHHH-hCC----CCCCcc----eEEEcC
Q 035832 47 FGLIFGRSGSGKTTLLQLL-AGL----SKPTSG----SINIRG 80 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l-~Gl----~~p~~G----~i~~~g 80 (245)
.++|+|++|+|||||++.+ .+. ..|+.| .+.++|
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~~~~~~~~~t~~~~~~~~~~~~ 64 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTGTYVQEESPEGGRFKKEIVVDG 64 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHSSCCCCCCTTCEEEEEEEEETT
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCCCcCCCcceEEEEEEECC
Confidence 3789999999999999655 444 456655 444544
|
| >1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00018 Score=56.30 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=20.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhC
Q 035832 46 SFGLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 46 e~~~liG~nGsGKSTLl~~l~G 67 (245)
.++.|.|++||||||+.+.|+.
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEecCCCCCHHHHHHHHHh
Confidence 3689999999999999999986
|
| >3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.21 E-value=0.00011 Score=63.29 Aligned_cols=39 Identities=31% Similarity=0.512 Sum_probs=31.3
Q ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcC
Q 035832 40 FSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRG 80 (245)
Q Consensus 40 l~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 80 (245)
+.+.++..+.|.||+|+|||||+++|++... .+-+.+++
T Consensus 44 ~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~--~~~i~v~~ 82 (301)
T 3cf0_A 44 FGMTPSKGVLFYGPPGCGKTLLAKAIANECQ--ANFISIKG 82 (301)
T ss_dssp HCCCCCSEEEEECSSSSSHHHHHHHHHHHTT--CEEEEECH
T ss_pred cCCCCCceEEEECCCCcCHHHHHHHHHHHhC--CCEEEEEh
Confidence 4567899999999999999999999998763 34555543
|
| >1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00021 Score=57.68 Aligned_cols=27 Identities=19% Similarity=0.166 Sum_probs=23.6
Q ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCC
Q 035832 42 LPEKSFGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 42 i~~Ge~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.++|-+++|.|+.||||||+.+.|+-.
T Consensus 6 ~~~~~~I~l~G~~GsGKsT~~~~L~~~ 32 (215)
T 1nn5_A 6 ARRGALIVLEGVDRAGKSTQSRKLVEA 32 (215)
T ss_dssp -CCCCEEEEEESTTSSHHHHHHHHHHH
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHH
Confidence 457889999999999999999999853
|
| >1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B* | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00018 Score=61.83 Aligned_cols=37 Identities=27% Similarity=0.308 Sum_probs=28.9
Q ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcC
Q 035832 42 LPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRG 80 (245)
Q Consensus 42 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 80 (245)
-..+.++.|.||+||||||+.+.|+.-++ .|.+.+++
T Consensus 30 ~~~~~livl~G~sGsGKSTla~~L~~~~~--~~~~~Is~ 66 (287)
T 1gvn_B 30 VESPTAFLLGGQPGSGKTSLRSAIFEETQ--GNVIVIDN 66 (287)
T ss_dssp CSSCEEEEEECCTTSCTHHHHHHHHHHTT--TCCEEECT
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHhC--CCeEEEec
Confidence 34678999999999999999999986442 35566654
|
| >2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00021 Score=56.76 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=23.1
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCC
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.++.+++|+|+.||||||+.+.|+..
T Consensus 7 ~~~~~I~l~G~~GsGKsT~~~~La~~ 32 (196)
T 2c95_A 7 KKTNIIFVVGGPGSGKGTQCEKIVQK 32 (196)
T ss_dssp TTSCEEEEEECTTSSHHHHHHHHHHH
T ss_pred cCCCEEEEECCCCCCHHHHHHHHHHH
Confidence 46789999999999999999999853
|
| >2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii} | Back alignment and structure |
|---|
Probab=97.17 E-value=0.00021 Score=57.37 Aligned_cols=27 Identities=26% Similarity=0.278 Sum_probs=23.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
+|.+++|.|+.||||||+.+.|+..+.
T Consensus 3 ~~~~I~i~G~~GsGKsT~~~~L~~~l~ 29 (213)
T 2plr_A 3 KGVLIAFEGIDGSGKSSQATLLKDWIE 29 (213)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999987554
|
| >1jal_A YCHF protein; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; 2.40A {Haemophilus influenzae} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=97.16 E-value=0.00028 Score=62.76 Aligned_cols=36 Identities=25% Similarity=0.323 Sum_probs=29.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHhC-----------CCCCCcceEEEcC
Q 035832 45 KSFGLIFGRSGSGKTTLLQLLAG-----------LSKPTSGSINIRG 80 (245)
Q Consensus 45 Ge~~~liG~nGsGKSTLl~~l~G-----------l~~p~~G~i~~~g 80 (245)
|-.++|+|.+|+|||||++.|+| -..|..|.+.+.+
T Consensus 2 ~~kI~IVG~pnvGKSTL~n~Lt~~~~~v~~~p~tTi~p~~g~v~~~~ 48 (363)
T 1jal_A 2 GFKCGIVGLPNVGKSTLFNALTKAGIEAANYPFCTIEPNTGVVPMPD 48 (363)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHTC------CCCCCCCCSSEEECCC
T ss_pred CCEEEEECCCCCCHHHHHHHHHCCCCcccCCCCceECceEEEEecCC
Confidence 34689999999999999999998 3356678777765
|
| >2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A* | Back alignment and structure |
|---|
Probab=97.15 E-value=0.00022 Score=57.43 Aligned_cols=26 Identities=31% Similarity=0.335 Sum_probs=23.3
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCC
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.+|-+++|.|+.||||||+.+.|+-.
T Consensus 8 ~~~~~I~l~G~~GsGKST~~~~L~~~ 33 (212)
T 2wwf_A 8 KKGKFIVFEGLDRSGKSTQSKLLVEY 33 (212)
T ss_dssp BCSCEEEEEESTTSSHHHHHHHHHHH
T ss_pred hcCCEEEEEcCCCCCHHHHHHHHHHH
Confidence 46889999999999999999999853
|
| >1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2 | Back alignment and structure |
|---|
Probab=97.14 E-value=0.011 Score=54.32 Aligned_cols=33 Identities=15% Similarity=0.109 Sum_probs=26.5
Q ss_pred eeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhC
Q 035832 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 35 l~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G 67 (245)
|+.+---+.+|+++.|.|++|+|||||+.-++-
T Consensus 232 LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~ 264 (503)
T 1q57_A 232 INDKTLGARGGEVIMVTSGSGMVMSTFVRQQAL 264 (503)
T ss_dssp HHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHH
T ss_pred hhHhhcccCCCeEEEEeecCCCCchHHHHHHHH
Confidence 444433588999999999999999999866653
|
| >3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus} | Back alignment and structure |
|---|
Probab=97.13 E-value=0.0002 Score=60.58 Aligned_cols=43 Identities=7% Similarity=0.169 Sum_probs=33.7
Q ss_pred CCCCCCHHHHHHHHHHHHHhhc-C-ceEEEEecChhHHHhhccEE
Q 035832 187 PLAGLDWKARADVVKLLKHLKK-E-LTILVVSHDLKEMAALVDHS 229 (245)
Q Consensus 187 Pts~LD~~~~~~i~~~l~~l~~-~-~tiii~tHd~~~~~~~~d~v 229 (245)
|||+++..+..++++.+.+... . .+..+.+|..+.+...++++
T Consensus 144 ~~Sa~~g~gi~~l~~~i~~~~~~~~~~~~~~~~~~~~~e~~~~~l 188 (271)
T 3k53_A 144 PTNAKKGEGVEELKRMIALMAEGKVTTNPIIPRYDEDIEREIKHI 188 (271)
T ss_dssp ECBGGGTBTHHHHHHHHHHHHHTCCCCCCCCCCCCHHHHHHHHHH
T ss_pred EEEeCCCCCHHHHHHHHHHHHhccccCCCCCcCCCHHHHHHHHHH
Confidence 8999999999999999988753 2 45566778888777777664
|
| >1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.09 E-value=0.00027 Score=55.95 Aligned_cols=23 Identities=22% Similarity=0.330 Sum_probs=20.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHhC
Q 035832 45 KSFGLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 45 Ge~~~liG~nGsGKSTLl~~l~G 67 (245)
+.+++|.|+.||||||+.+.|+-
T Consensus 3 ~~~I~l~G~~GsGKsT~a~~L~~ 25 (196)
T 1tev_A 3 PLVVFVLGGPGAGKGTQCARIVE 25 (196)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHH
Confidence 56899999999999999999874
|
| >1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=97.07 E-value=0.00026 Score=55.90 Aligned_cols=23 Identities=30% Similarity=0.582 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
+++|.|++||||||+.+.|+-.+
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l 25 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEIL 25 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999998654
|
| >2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.06 E-value=9.5e-05 Score=58.99 Aligned_cols=29 Identities=31% Similarity=0.316 Sum_probs=24.5
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 41 SLPEKSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 41 ~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.+..+.+++|+|+.||||||+.+.|+..+
T Consensus 8 ~~~~~~~I~l~G~~GsGKsT~a~~L~~~l 36 (199)
T 2bwj_A 8 DLRKCKIIFIIGGPGSGKGTQCEKLVEKY 36 (199)
T ss_dssp HHHHSCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred ccCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 34567899999999999999999997643
|
| >4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.00019 Score=61.44 Aligned_cols=45 Identities=24% Similarity=0.284 Sum_probs=34.2
Q ss_pred ceeeeeeEEEcCC-----------CEEEEECCCCCcHHHHHHHHhCCCCCCcceEE
Q 035832 33 DILNGVSFSLPEK-----------SFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77 (245)
Q Consensus 33 ~il~~vsl~i~~G-----------e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~ 77 (245)
.+++.+...+..+ ..+.|.||+|+|||||.++|++...+..+.+.
T Consensus 24 ~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~ 79 (311)
T 4fcw_A 24 EAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMI 79 (311)
T ss_dssp HHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEE
T ss_pred HHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceE
Confidence 3555555555543 58999999999999999999998877666443
|
| >3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A* | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00034 Score=56.08 Aligned_cols=23 Identities=30% Similarity=0.300 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
+++|.|++||||||+.+.|+..+
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~l 26 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAAL 26 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 79999999999999999998743
|
| >2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.00025 Score=55.77 Aligned_cols=25 Identities=28% Similarity=0.211 Sum_probs=17.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl 68 (245)
++.++.|.|++||||||+.+.|+..
T Consensus 4 ~~~~I~l~G~~GsGKST~a~~La~~ 28 (183)
T 2vli_A 4 RSPIIWINGPFGVGKTHTAHTLHER 28 (183)
T ss_dssp -CCEEEEECCC----CHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHh
Confidence 5678999999999999999999743
|
| >1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10 | Back alignment and structure |
|---|
Probab=97.00 E-value=0.00038 Score=55.25 Aligned_cols=26 Identities=27% Similarity=0.293 Sum_probs=22.6
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCCC
Q 035832 46 SFGLIFGRSGSGKTTLLQLLAGLSKP 71 (245)
Q Consensus 46 e~~~liG~nGsGKSTLl~~l~Gl~~p 71 (245)
.+++|+|++|||||||+..|+..++.
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~ 30 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVR 30 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHh
Confidence 47899999999999999999887653
|
| >1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.0005 Score=56.04 Aligned_cols=26 Identities=27% Similarity=0.230 Sum_probs=22.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
+|-+++|+|+.||||||+.+.|+..+
T Consensus 3 ~~~~I~l~G~~GsGKsT~a~~La~~l 28 (220)
T 1aky_A 3 ESIRMVLIGPPGAGKGTQAPNLQERF 28 (220)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHc
Confidence 56789999999999999999997543
|
| >3b1v_A Ferrous iron uptake transporter protein B; G protein, iron transport, GTPase, transmembrane, potassium; HET: GGM; 1.85A {Streptococcus thermophilus} PDB: 3b1w_A* 3lx5_A* 3lx8_A* 3ss8_A* 3b1z_A 3b1y_A* 3b1x_A* 3tah_A* | Back alignment and structure |
|---|
Probab=96.94 E-value=0.00044 Score=58.89 Aligned_cols=23 Identities=35% Similarity=0.546 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|++|+|||||++.++|..
T Consensus 5 kI~lvG~~nvGKSTL~n~L~g~~ 27 (272)
T 3b1v_A 5 EIALIGNPNSGKTSLFNLITGHN 27 (272)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 48999999999999999999964
|
| >1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A* | Back alignment and structure |
|---|
Probab=96.93 E-value=0.00045 Score=56.68 Aligned_cols=26 Identities=27% Similarity=0.331 Sum_probs=21.7
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCC
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.++.+++|+|+.||||||+.+.|+.-
T Consensus 5 ~~~~~I~l~G~~GsGKsT~a~~La~~ 30 (227)
T 1zd8_A 5 ARLLRAVIMGAPGSGKGTVSSRITTH 30 (227)
T ss_dssp --CCEEEEEECTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEECCCCCCHHHHHHHHHHH
Confidence 45678999999999999999999843
|
| >3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A* | Back alignment and structure |
|---|
Probab=96.92 E-value=0.0004 Score=53.18 Aligned_cols=23 Identities=30% Similarity=0.697 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHhCCCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
++|+|+.|+|||||++.++|...
T Consensus 5 i~~vG~~~~GKSsli~~l~~~~~ 27 (166)
T 3q72_A 5 VLLLGAPGVGKSALARIFGGVED 27 (166)
T ss_dssp EEEEESTTSSHHHHHHHHCCC--
T ss_pred EEEECCCCCCHHHHHHHHcCccc
Confidence 78999999999999999998653
|
| >1fzq_A ADP-ribosylation factor-like protein 3; protein-GDP complex without magnesium, ARF family, RAS superfamily, G-domain, signaling protein; HET: MES GDP; 1.70A {Mus musculus} SCOP: c.37.1.8 PDB: 3bh7_A* 3bh6_A* | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00041 Score=54.61 Aligned_cols=23 Identities=43% Similarity=0.504 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|++|+|||||++.+.+-.
T Consensus 18 ki~ivG~~~vGKSsL~~~l~~~~ 40 (181)
T 1fzq_A 18 RILLLGLDNAGKTTLLKQLASED 40 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 48899999999999999999863
|
| >2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=96.91 E-value=0.00037 Score=55.06 Aligned_cols=25 Identities=44% Similarity=0.426 Sum_probs=21.9
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Q 035832 46 SFGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 46 e~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
=.++|+|+.|||||||++.+++-..
T Consensus 49 ~~i~vvG~~g~GKSsll~~l~~~~~ 73 (193)
T 2ged_A 49 PSIIIAGPQNSGKTSLLTLLTTDSV 73 (193)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3689999999999999999998653
|
| >2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0005 Score=53.03 Aligned_cols=23 Identities=39% Similarity=0.613 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|+.|+|||||++.+.+-.
T Consensus 6 ki~i~G~~~vGKSsl~~~l~~~~ 28 (175)
T 2nzj_A 6 RVVLLGDPGVGKTSLASLFAGKQ 28 (175)
T ss_dssp EEEEECCTTSSHHHHHHHHHCC-
T ss_pred EEEEECCCCccHHHHHHHHhcCC
Confidence 37899999999999999999864
|
| >3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.00049 Score=55.76 Aligned_cols=21 Identities=24% Similarity=0.332 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~G 67 (245)
.++|+||.||||||+.+.|+.
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIE 22 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999964
|
| >2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.00052 Score=54.25 Aligned_cols=23 Identities=35% Similarity=0.251 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
+++|.|+.||||||+.+.|+..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l 24 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYL 24 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999997643
|
| >1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00046 Score=53.69 Aligned_cols=23 Identities=30% Similarity=0.284 Sum_probs=20.3
Q ss_pred CEEEEECCCCCcHHHHHHHHhCC
Q 035832 46 SFGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 46 e~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.+++|+|+.||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (173)
T 1e6c_A 3 EPIFMVGARGCGMTTVGRELARA 25 (173)
T ss_dssp CCEEEESCTTSSHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHH
Confidence 36899999999999999999753
|
| >1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A* | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00058 Score=53.14 Aligned_cols=23 Identities=35% Similarity=0.382 Sum_probs=20.5
Q ss_pred CCEEEEECCCCCcHHHHHHHHhC
Q 035832 45 KSFGLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 45 Ge~~~liG~nGsGKSTLl~~l~G 67 (245)
=++++|+|+.||||||+.+.|+.
T Consensus 7 ~~~i~l~G~~GsGKSTva~~La~ 29 (168)
T 1zuh_A 7 MQHLVLIGFMGSGKSSLAQELGL 29 (168)
T ss_dssp -CEEEEESCTTSSHHHHHHHHHH
T ss_pred cceEEEECCCCCCHHHHHHHHHH
Confidence 36899999999999999999975
|
| >2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.88 E-value=0.00054 Score=52.54 Aligned_cols=22 Identities=27% Similarity=0.392 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.++++|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999874
|
| >2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00066 Score=54.47 Aligned_cols=25 Identities=32% Similarity=0.319 Sum_probs=21.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.+-+++|+|+.||||||+.+.|+..
T Consensus 19 ~~~~I~l~G~~GsGKST~a~~La~~ 43 (201)
T 2cdn_A 19 SHMRVLLLGPPGAGKGTQAVKLAEK 43 (201)
T ss_dssp SCCEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4568999999999999999999753
|
| >1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1 | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00048 Score=56.23 Aligned_cols=25 Identities=28% Similarity=0.262 Sum_probs=21.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.+-++.|+|++||||||+.+.|+--
T Consensus 4 ~~~~I~l~G~~GsGKsT~~~~La~~ 28 (222)
T 1zak_A 4 DPLKVMISGAPASGKGTQCELIKTK 28 (222)
T ss_dssp CSCCEEEEESTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHH
Confidence 4567899999999999999999743
|
| >3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00054 Score=53.05 Aligned_cols=22 Identities=45% Similarity=0.587 Sum_probs=20.1
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
++|+|+.|+|||||++.+.+-.
T Consensus 12 i~v~G~~~~GKssl~~~l~~~~ 33 (181)
T 3tw8_B 12 LLIIGDSGVGKSSLLLRFADNT 33 (181)
T ss_dssp EEEECCTTSCHHHHHHHHCSCC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999998754
|
| >3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A* | Back alignment and structure |
|---|
Probab=96.86 E-value=0.00057 Score=52.50 Aligned_cols=22 Identities=41% Similarity=0.679 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
++|+|+.|+|||||++.+++..
T Consensus 5 i~ivG~~~~GKSsli~~l~~~~ 26 (169)
T 3q85_A 5 VMLVGESGVGKSTLAGTFGGLQ 26 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHCC-
T ss_pred EEEECCCCCCHHHHHHHHHhcc
Confidence 7899999999999999998754
|
| >1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2 | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00077 Score=58.69 Aligned_cols=46 Identities=28% Similarity=0.182 Sum_probs=35.8
Q ss_pred ceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhC----CCCCCcceEEEc
Q 035832 33 DILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAG----LSKPTSGSINIR 79 (245)
Q Consensus 33 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G----l~~p~~G~i~~~ 79 (245)
..+++..+.+ .|.-++|+|+||+|||||...+.+ ++..+...|...
T Consensus 133 ~~~H~~~v~~-~g~~vl~~G~sG~GKSt~a~~l~~~g~~lv~dD~~~i~~~ 182 (314)
T 1ko7_A 133 TSLHGVLVDV-YGVGVLITGDSGIGKSETALELIKRGHRLVADDNVEIREI 182 (314)
T ss_dssp EEEESEEEEE-TTEEEEEEESTTSSHHHHHHHHHHTTCEEEESSEEEEEES
T ss_pred eeeeEEEEEE-CCEEEEEEeCCCCCHHHHHHHHHhcCCceecCCeEEEEEc
Confidence 4688888888 788999999999999999998887 444444444443
|
| >1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A* | Back alignment and structure |
|---|
Probab=96.85 E-value=0.00061 Score=54.65 Aligned_cols=25 Identities=28% Similarity=0.339 Sum_probs=21.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl 68 (245)
+..+++|.|+.||||||+.+.|+..
T Consensus 14 ~~~~I~l~G~~GsGKsT~~~~L~~~ 38 (203)
T 1ukz_A 14 QVSVIFVLGGPGAGKGTQCEKLVKD 38 (203)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4457999999999999999999743
|
| >2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus} | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00062 Score=52.75 Aligned_cols=22 Identities=32% Similarity=0.240 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
+++|.|+.||||||+.+.|+..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRS 23 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999763
|
| >1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A* | Back alignment and structure |
|---|
Probab=96.84 E-value=0.00044 Score=52.88 Aligned_cols=22 Identities=18% Similarity=0.311 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
++++|+.|+|||||++.+.+-.
T Consensus 8 i~v~G~~~~GKssl~~~l~~~~ 29 (168)
T 1z2a_A 8 MVVVGNGAVGKSSMIQRYCKGI 29 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 7899999999999999998643
|
| >2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426} | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00043 Score=55.50 Aligned_cols=24 Identities=33% Similarity=0.281 Sum_probs=21.7
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Q 035832 46 SFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 46 e~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
..+.|.||+|+|||||++.++...
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~ 78 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANEL 78 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 678999999999999999998754
|
| >2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.00055 Score=54.03 Aligned_cols=23 Identities=35% Similarity=0.458 Sum_probs=20.2
Q ss_pred CEEEEECCCCCcHHHHHHHHhCC
Q 035832 46 SFGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 46 e~~~liG~nGsGKSTLl~~l~Gl 68 (245)
-+++|+|+.||||||+.+.|+..
T Consensus 3 ~~I~l~G~~GsGKsT~a~~La~~ 25 (184)
T 2iyv_A 3 PKAVLVGLPGSGKSTIGRRLAKA 25 (184)
T ss_dssp CSEEEECSTTSSHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHH
Confidence 46899999999999999999753
|
| >3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A* | Back alignment and structure |
|---|
Probab=96.83 E-value=0.0006 Score=55.28 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.++|+||.||||||+.+.|+.-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~ 23 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEK 23 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4789999999999999999643
|
| >1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0005 Score=54.22 Aligned_cols=24 Identities=25% Similarity=0.304 Sum_probs=21.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Q 035832 45 KSFGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 45 Ge~~~liG~nGsGKSTLl~~l~Gl 68 (245)
..+++|+|+.||||||+.+.|+..
T Consensus 6 ~~~I~l~G~~GsGKsT~~~~L~~~ 29 (194)
T 1qf9_A 6 PNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CcEEEEECCCCCCHHHHHHHHHHH
Confidence 458999999999999999999753
|
| >3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.00063 Score=57.25 Aligned_cols=25 Identities=28% Similarity=0.412 Sum_probs=22.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl 68 (245)
++.++.|+|++||||||+.+.|+..
T Consensus 3 ~~~lIvl~G~pGSGKSTla~~La~~ 27 (260)
T 3a4m_A 3 DIMLIILTGLPGVGKSTFSKNLAKI 27 (260)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCEEEEEEcCCCCCHHHHHHHHHHH
Confidence 4678999999999999999999864
|
| >3euj_A Chromosome partition protein MUKB, linker; MUKB, MUKE, chromosome condensation, condensin, SMC, N subunit, ABC-type ATPase, WHD, ATP-binding; HET: AGS; 3.10A {Haemophilus ducreyi} PDB: 3euk_A* | Back alignment and structure |
|---|
Probab=96.82 E-value=0.0021 Score=59.14 Aligned_cols=75 Identities=23% Similarity=0.368 Sum_probs=57.5
Q ss_pred CCCCCCCCChHHHHHHHHHHHH--hh---------------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEe
Q 035832 154 LDKDPHSLSGGYKRRLALAIQL--VQ---------------VPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVS 216 (245)
Q Consensus 154 ~~~~~~~LSgGqkqrv~iAral--~~---------------~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~t 216 (245)
+++....+||||+|-.-+|.+. +. .-.++++||. +-+|.+..+..+++++++ +.-+|++|
T Consensus 373 ~s~~~g~~SGGE~qp~Yv~i~As~~~~y~~~~~~~~~~~~~~~rlvvlDEA-~kmD~~~~~~~~~l~~~l--glQliiat 449 (483)
T 3euj_A 373 MRAESSALSTGEAIGTGMSILLMVVQSWEEESRRMRAKDILPCRLLFLDQA-ARLDAMSINTLFELCERL--DMQLLIAA 449 (483)
T ss_dssp EECCGGGSCHHHHHHHHHHHHHHHHHHHHHHTSSSSCSSCCCCCEEEESSG-GGSCHHHHHHHHHHHHHT--TCEEEEEE
T ss_pred eecccCCCCCccccHHHHHHHHHHHHHhcccccccccCCCCceeEEEEecc-ccCCHHHHHHHHHHHHHc--CCEEEEEC
Confidence 3455788999999965444433 22 2268999999 999999999999999977 45678888
Q ss_pred cChhHHHhhccEEEEEe
Q 035832 217 HDLKEMAALVDHSWRMD 233 (245)
Q Consensus 217 Hd~~~~~~~~d~v~~l~ 233 (245)
=+ .+..++|.++.+-
T Consensus 450 P~--~i~p~v~~~~~~~ 464 (483)
T 3euj_A 450 PE--NISPERGTTYKLV 464 (483)
T ss_dssp SS--SCCCSSSEEEECC
T ss_pred cc--hhhhccCceEEEE
Confidence 77 5667889888775
|
| >2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A* | Back alignment and structure |
|---|
Probab=96.81 E-value=0.00085 Score=51.93 Aligned_cols=25 Identities=32% Similarity=0.383 Sum_probs=21.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl 68 (245)
+.-.++|+|+.|+|||||++.+.+-
T Consensus 7 ~~~~i~v~G~~~~GKssl~~~l~~~ 31 (178)
T 2lkc_A 7 RPPVVTIMGHVDHGKTTLLDAIRHS 31 (178)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHTT
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCC
Confidence 4456899999999999999999874
|
| >2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=96.80 E-value=0.00052 Score=52.20 Aligned_cols=23 Identities=30% Similarity=0.394 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++++|+.|+|||||++.+.+-.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~~ 25 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKKR 25 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 37899999999999999998754
|
| >1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R* | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00053 Score=52.21 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.++++|+.|+|||||++.+.+-
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999988754
|
| >3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A | Back alignment and structure |
|---|
Probab=96.79 E-value=0.00077 Score=54.81 Aligned_cols=27 Identities=19% Similarity=0.260 Sum_probs=23.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
.+..+.|.||+|+|||||++.++....
T Consensus 51 ~~~~~ll~G~~G~GKT~la~~l~~~~~ 77 (242)
T 3bos_A 51 GVQAIYLWGPVKSGRTHLIHAACARAN 77 (242)
T ss_dssp SCSEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHHH
Confidence 578999999999999999999986543
|
| >2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ... | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00047 Score=52.34 Aligned_cols=22 Identities=27% Similarity=0.345 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
++++|+.|+|||||++.+.+-.
T Consensus 6 i~v~G~~~~GKssl~~~l~~~~ 27 (166)
T 2ce2_X 6 LVVVGAGGVGKSALTIQLIQNH 27 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 7899999999999999998653
|
| >1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A* | Back alignment and structure |
|---|
Probab=96.78 E-value=0.00057 Score=53.96 Aligned_cols=24 Identities=25% Similarity=0.306 Sum_probs=20.8
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Q 035832 46 SFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 46 e~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
=.++|+|+.|+|||||++.+.+-.
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC-
T ss_pred CEEEEECCCCCCHHHHHHHHhCCC
Confidence 458899999999999999999853
|
| >1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A* | Back alignment and structure |
|---|
Probab=96.77 E-value=0.00055 Score=52.19 Aligned_cols=21 Identities=24% Similarity=0.306 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl 68 (245)
++++|+.|+|||||++.+.+-
T Consensus 7 i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 7 VIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999999864
|
| >1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.00057 Score=52.38 Aligned_cols=22 Identities=23% Similarity=0.401 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
++++|+.|+|||||++.+.+-.
T Consensus 9 i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 9 VCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 7899999999999999998764
|
| >1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A* | Back alignment and structure |
|---|
Probab=96.76 E-value=0.0007 Score=56.56 Aligned_cols=23 Identities=22% Similarity=0.249 Sum_probs=20.8
Q ss_pred CEEEEECCCCCcHHHHHHHHhCC
Q 035832 46 SFGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 46 e~~~liG~nGsGKSTLl~~l~Gl 68 (245)
-+++|.|+.||||||+.+.|+..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~ 45 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQL 45 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHH
Confidence 47999999999999999999764
|
| >3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0006 Score=53.54 Aligned_cols=23 Identities=35% Similarity=0.377 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|+.|||||||++.+.+-.
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~~ 47 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCc
Confidence 58899999999999999998864
|
| >1moz_A ARL1, ADP-ribosylation factor-like protein 1; GTP-binding, protein binding; HET: GDP; 3.17A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00044 Score=53.94 Aligned_cols=23 Identities=43% Similarity=0.450 Sum_probs=20.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHhC
Q 035832 45 KSFGLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 45 Ge~~~liG~nGsGKSTLl~~l~G 67 (245)
.=.++|+|++|+|||||++.+.+
T Consensus 18 ~~~i~v~G~~~~GKssli~~l~~ 40 (183)
T 1moz_A 18 ELRILILGLDGAGKTTILYRLQI 40 (183)
T ss_dssp CEEEEEEEETTSSHHHHHHHTCC
T ss_pred ccEEEEECCCCCCHHHHHHHHhc
Confidence 34588999999999999999985
|
| >1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A* | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00058 Score=52.39 Aligned_cols=22 Identities=23% Similarity=0.258 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.++++|+.|+|||||++.+.+-
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 3789999999999999999865
|
| >1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6 | Back alignment and structure |
|---|
Probab=96.75 E-value=0.0004 Score=59.75 Aligned_cols=26 Identities=19% Similarity=0.319 Sum_probs=19.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
++-+++|.||+||||||+.+.|+..+
T Consensus 4 ~~~iIgItG~sGSGKSTva~~L~~~l 29 (290)
T 1a7j_A 4 KHPIISVTGSSGAGTSTVKHTFDQIF 29 (290)
T ss_dssp TSCEEEEESCC---CCTHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998643
|
| >1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.75 E-value=0.00058 Score=52.24 Aligned_cols=22 Identities=14% Similarity=0.356 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
++++|+.|+|||||++.+.+-.
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1ek0_A 6 LVLLGEAAVGKSSIVLRFVSND 27 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999987653
|
| >2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.00078 Score=54.39 Aligned_cols=24 Identities=25% Similarity=0.382 Sum_probs=21.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCC
Q 035832 45 KSFGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 45 Ge~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.-+++|+|+.||||||+.+.|+..
T Consensus 12 ~~iIgltG~~GSGKSTva~~L~~~ 35 (192)
T 2grj_A 12 HMVIGVTGKIGTGKSTVCEILKNK 35 (192)
T ss_dssp EEEEEEECSTTSSHHHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHHHh
Confidence 357899999999999999999854
|
| >3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1} | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0018 Score=59.04 Aligned_cols=34 Identities=26% Similarity=0.376 Sum_probs=27.6
Q ss_pred eeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhC
Q 035832 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 34 il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G 67 (245)
-|+.+.--+.+|+++.|.|+.|+|||||+--++.
T Consensus 186 ~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~ 219 (444)
T 3bgw_A 186 ELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAK 219 (444)
T ss_dssp HHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHH
T ss_pred HHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHH
Confidence 4555544589999999999999999999876654
|
| >1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A* | Back alignment and structure |
|---|
Probab=96.74 E-value=0.0006 Score=52.84 Aligned_cols=23 Identities=35% Similarity=0.472 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++++|+.|||||||++.+.+-.
T Consensus 10 ~i~v~G~~~~GKSsli~~l~~~~ 32 (182)
T 1ky3_A 10 KVIILGDSGVGKTSLMHRYVNDK 32 (182)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999887654
|
| >1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D* | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00061 Score=52.02 Aligned_cols=21 Identities=24% Similarity=0.368 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl 68 (245)
++++|+.|+|||||++.+.+-
T Consensus 6 i~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 6 LVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999864
|
| >2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.73 E-value=0.00065 Score=53.22 Aligned_cols=22 Identities=41% Similarity=0.543 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
++++|+.|+|||||++.+.+-.
T Consensus 4 i~v~G~~~~GKSsli~~l~~~~ 25 (190)
T 2cxx_A 4 IIFAGRSNVGKSTLIYRLTGKK 25 (190)
T ss_dssp EEEEEBTTSSHHHHHHHHHSCC
T ss_pred EEEECCCCCCHHHHHHHHhCcC
Confidence 6899999999999999999864
|
| >1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A | Back alignment and structure |
|---|
Probab=96.72 E-value=0.00055 Score=52.44 Aligned_cols=22 Identities=36% Similarity=0.454 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
++++|+.|+|||||++.+.+-.
T Consensus 6 i~v~G~~~~GKssli~~l~~~~ 27 (170)
T 1g16_A 6 ILLIGDSGVGKSCLLVRFVEDK 27 (170)
T ss_dssp EEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHHhCC
Confidence 7899999999999999998654
|
| >1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A* | Back alignment and structure |
|---|
Probab=96.72 E-value=0.00063 Score=52.66 Aligned_cols=22 Identities=23% Similarity=0.468 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
++++|+.|+|||||++.+.+-.
T Consensus 10 i~v~G~~~~GKSsli~~l~~~~ 31 (177)
T 1wms_A 10 VILLGDGGVGKSSLMNRYVTNK 31 (177)
T ss_dssp EEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999998643
|
| >1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1 | Back alignment and structure |
|---|
Probab=96.70 E-value=0.00085 Score=57.92 Aligned_cols=23 Identities=43% Similarity=0.674 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|++|+|||||++.+.|-.
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~~ 31 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGVK 31 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCc
Confidence 58999999999999999999863
|
| >2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A* | Back alignment and structure |
|---|
Probab=96.69 E-value=0.00062 Score=52.74 Aligned_cols=22 Identities=23% Similarity=0.276 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.++++|+.|+|||||++.+.+-
T Consensus 11 ~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 11 KLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999999875
|
| >2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A* | Back alignment and structure |
|---|
Probab=96.67 E-value=0.00093 Score=54.79 Aligned_cols=22 Identities=45% Similarity=0.487 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
+++|.|+.||||||+.+.|+-.
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~ 23 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDK 23 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999743
|
| >2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A* | Back alignment and structure |
|---|
Probab=96.66 E-value=0.00087 Score=51.89 Aligned_cols=22 Identities=32% Similarity=0.439 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
++|+|+.|+|||||++.+.+-.
T Consensus 9 i~v~G~~~~GKssl~~~l~~~~ 30 (178)
T 2hxs_A 9 IVVLGDGASGKTSLTTCFAQET 30 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHGGG
T ss_pred EEEECcCCCCHHHHHHHHHhCc
Confidence 7899999999999999998754
|
| >3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.001 Score=55.42 Aligned_cols=25 Identities=28% Similarity=0.255 Sum_probs=22.0
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhC
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~G 67 (245)
.++-+++|+||.||||||+.+.|+-
T Consensus 27 ~~~~~I~l~G~~GsGKsT~a~~L~~ 51 (243)
T 3tlx_A 27 KPDGRYIFLGAPGSGKGTQSLNLKK 51 (243)
T ss_dssp SCCEEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCcEEEEECCCCCCHHHHHHHHHH
Confidence 3567899999999999999999974
|
| >4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.00075 Score=52.72 Aligned_cols=22 Identities=27% Similarity=0.347 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
++++|+.|+|||||++.+.+-.
T Consensus 7 i~v~G~~~~GKSsli~~l~~~~ 28 (189)
T 4dsu_A 7 LVVVGADGVGKSALTIQLIQNH 28 (189)
T ss_dssp EEEECCTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCC
Confidence 7899999999999999998643
|
| >1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A* | Back alignment and structure |
|---|
Probab=96.65 E-value=0.00075 Score=51.59 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl 68 (245)
++++|+.|+|||||++.+.+-
T Consensus 9 i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 9 LVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHcC
Confidence 789999999999999999863
|
| >3cbq_A GTP-binding protein REM 2; FLJ38964A, structural genomics consortium, SGC, GDP, membrane, nucleotide-binding, nucleotide binding protein; HET: GDP; 1.82A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.65 E-value=0.00077 Score=53.84 Aligned_cols=23 Identities=39% Similarity=0.602 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|++|+|||||++.++|..
T Consensus 25 ki~vvG~~~vGKSsLi~~l~~~~ 47 (195)
T 3cbq_A 25 KVMLVGESGVGKSTLAGTFGGLQ 47 (195)
T ss_dssp EEEEECSTTSSHHHHHHHTCCEE
T ss_pred EEEEECCCCCCHHHHHHHHHhcc
Confidence 47899999999999999998753
|
| >3t5d_A Septin-7; GTP-binding protein, cytoskeleton, signaling protein; HET: GDP; 3.30A {Homo sapiens} PDB: 3tw4_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.00081 Score=56.94 Aligned_cols=23 Identities=35% Similarity=0.420 Sum_probs=20.4
Q ss_pred EEEECCCCCcHHHHHHHHhCCCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
++|+|++|+|||||++.|.+-..
T Consensus 11 I~vvG~~g~GKSTLin~L~~~~~ 33 (274)
T 3t5d_A 11 LMVVGESGLGKSTLINSLFLTDL 33 (274)
T ss_dssp EEEEECTTSSHHHHHHHHSSSCC
T ss_pred EEEECCCCCCHHHHHHHHhCCCc
Confidence 78999999999999999987643
|
| >2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.00075 Score=53.30 Aligned_cols=23 Identities=35% Similarity=0.456 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRNE 49 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37899999999999999998743
|
| >3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A* | Back alignment and structure |
|---|
Probab=96.64 E-value=0.0008 Score=52.86 Aligned_cols=24 Identities=29% Similarity=0.266 Sum_probs=21.3
Q ss_pred EEEECCCCCcHHHHHHHHhCCCCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLSKP 71 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~~p 71 (245)
++|+|+.|+|||||++.+.|....
T Consensus 17 i~vvG~~~~GKssL~~~l~~~~~~ 40 (198)
T 3t1o_A 17 IVYYGPGLSGKTTNLKWIYSKVPE 40 (198)
T ss_dssp EEEECSTTSSHHHHHHHHHHTSCG
T ss_pred EEEECCCCCCHHHHHHHHHhhccc
Confidence 689999999999999999987643
|
| >3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.64 E-value=0.00076 Score=53.07 Aligned_cols=23 Identities=22% Similarity=0.369 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|+.|+|||||++.+.+-.
T Consensus 9 ki~v~G~~~~GKSsli~~l~~~~ 31 (208)
T 3clv_A 9 KTVLLGESSVGKSSIVLRLTKDT 31 (208)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhCc
Confidence 37899999999999999998763
|
| >3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.00094 Score=56.25 Aligned_cols=23 Identities=35% Similarity=0.595 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|+.|||||||++.++|..
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~~ 25 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNAN 25 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47899999999999999999974
|
| >2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus} | Back alignment and structure |
|---|
Probab=96.63 E-value=0.0009 Score=57.09 Aligned_cols=23 Identities=35% Similarity=0.306 Sum_probs=20.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHhC
Q 035832 45 KSFGLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 45 Ge~~~liG~nGsGKSTLl~~l~G 67 (245)
.-+++|.|++||||||+.+.|+.
T Consensus 75 ~~iI~I~G~~GSGKSTva~~La~ 97 (281)
T 2f6r_A 75 LYVLGLTGISGSGKSSVAQRLKN 97 (281)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHH
T ss_pred CEEEEEECCCCCCHHHHHHHHHH
Confidence 35799999999999999999983
|
| >1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.00079 Score=51.67 Aligned_cols=22 Identities=45% Similarity=0.436 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.++++|+.|+|||||++.+.+-
T Consensus 9 ~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 9 RILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999753
|
| >3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.00078 Score=52.71 Aligned_cols=22 Identities=36% Similarity=0.356 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.++|+|+.|+|||||++.+.+-
T Consensus 13 ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 13 KFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999864
|
| >3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A* | Back alignment and structure |
|---|
Probab=96.63 E-value=0.001 Score=57.49 Aligned_cols=23 Identities=39% Similarity=0.602 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
+++|+|+.|+|||||++.|.|-.
T Consensus 12 ~v~ivG~~nvGKSTLin~l~g~~ 34 (308)
T 3iev_A 12 YVAIVGKPNVGKSTLLNNLLGTK 34 (308)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 68899999999999999999863
|
| >1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20 | Back alignment and structure |
|---|
Probab=96.61 E-value=0.0013 Score=51.12 Aligned_cols=27 Identities=30% Similarity=0.411 Sum_probs=22.9
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
..+..+.|.||.|+|||||++.++..+
T Consensus 41 ~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 41 RTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp SSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 345678999999999999999998754
|
| >1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ... | Back alignment and structure |
|---|
Probab=96.60 E-value=0.00085 Score=51.22 Aligned_cols=20 Identities=40% Similarity=0.428 Sum_probs=18.5
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 035832 48 GLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~G 67 (245)
++++|+.|+|||||++.+.+
T Consensus 3 i~~~G~~~~GKssl~~~l~~ 22 (164)
T 1r8s_A 3 ILMVGLDAAGKTTILYKLKL 22 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 68999999999999999975
|
| >3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.60 E-value=0.001 Score=55.28 Aligned_cols=29 Identities=31% Similarity=0.368 Sum_probs=22.0
Q ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCC
Q 035832 42 LPEKSFGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 42 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
..+|-++.+.|+.||||||+.+.|+..+.
T Consensus 22 m~~g~~I~~eG~~GsGKsT~~~~l~~~l~ 50 (227)
T 3v9p_A 22 MARGKFITFEGIDGAGKTTHLQWFCDRLQ 50 (227)
T ss_dssp -CCCCEEEEECCC---CHHHHHHHHHHHH
T ss_pred ccCCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 35899999999999999999999986653
|
| >1ksh_A ARF-like protein 2; small GTPase, small GTP-binding protein, ARF family; HET: CME GDP; 1.80A {Mus musculus} SCOP: c.37.1.8 PDB: 1ksg_A* 1ksj_A* 3doe_A* 3dof_A* | Back alignment and structure |
|---|
Probab=96.58 E-value=0.0012 Score=51.79 Aligned_cols=25 Identities=32% Similarity=0.446 Sum_probs=21.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 45 KSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 45 Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.=.++++|+.|+|||||++.+.+-.
T Consensus 18 ~~~i~v~G~~~~GKssl~~~l~~~~ 42 (186)
T 1ksh_A 18 ELRLLMLGLDNAGKTTILKKFNGED 42 (186)
T ss_dssp CEEEEEECSTTSSHHHHHHHHTTCC
T ss_pred eeEEEEECCCCCCHHHHHHHHhcCC
Confidence 3357899999999999999998754
|
| >2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.00091 Score=52.05 Aligned_cols=22 Identities=23% Similarity=0.243 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.++|+|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 20 KVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhhC
Confidence 3789999999999999999864
|
| >3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A* | Back alignment and structure |
|---|
Probab=96.57 E-value=0.0009 Score=52.61 Aligned_cols=22 Identities=27% Similarity=0.298 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.++++|+.|+|||||++.+++-
T Consensus 23 ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 23 KLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999865
|
| >2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.00082 Score=51.92 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.++|+|+.|+|||||++.+.+-
T Consensus 16 ~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 16 KLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999854
|
| >2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.56 E-value=0.00092 Score=51.83 Aligned_cols=23 Identities=35% Similarity=0.403 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++++|+.|+|||||++.+.+-.
T Consensus 12 ~i~v~G~~~~GKssli~~l~~~~ 34 (180)
T 2g6b_A 12 KVMLVGDSGVGKTCLLVRFKDGA 34 (180)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 37899999999999999998644
|
| >1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A* | Back alignment and structure |
|---|
Probab=96.56 E-value=0.00093 Score=51.59 Aligned_cols=22 Identities=32% Similarity=0.493 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
++++|+.|+|||||++.+.+-.
T Consensus 18 i~v~G~~~~GKSsli~~l~~~~ 39 (179)
T 1z0f_A 18 YIIIGDMGVGKSCLLHQFTEKK 39 (179)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHHcCC
Confidence 7899999999999999998654
|
| >2dby_A GTP-binding protein; GDP, structural genomics, NPPSFA, natio project on protein structural and functional analyses; HET: GDP; 1.76A {Thermus thermophilus} PDB: 2dwq_A | Back alignment and structure |
|---|
Probab=96.55 E-value=0.00087 Score=59.66 Aligned_cols=21 Identities=33% Similarity=0.355 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl 68 (245)
++|+|++|+|||||++.|++.
T Consensus 4 v~IVG~pnvGKSTL~n~L~~~ 24 (368)
T 2dby_A 4 VGIVGLPNVGKSTLFNALTRA 24 (368)
T ss_dssp EEEECCSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999985
|
| >2il1_A RAB12; G-protein, GDP, GTPase, predicted, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.10A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.54 E-value=0.0012 Score=52.24 Aligned_cols=22 Identities=32% Similarity=0.555 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
++|+|+.|+|||||++.+.+-.
T Consensus 29 i~vvG~~~~GKSsLi~~l~~~~ 50 (192)
T 2il1_A 29 VIIIGSRGVGKTSLMERFTDDT 50 (192)
T ss_dssp EEEECSTTSSHHHHHHHHCC--
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999998754
|
| >3a1s_A Iron(II) transport protein B; FEOB, iron transporter, small GTPase, G protein, GDI; HET: GDP; 1.50A {Thermotoga maritima} PDB: 3a1t_A* 3a1u_A* 3a1v_A* 3a1w_A | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0012 Score=55.53 Aligned_cols=23 Identities=30% Similarity=0.381 Sum_probs=21.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|+.|+|||||++.++|..
T Consensus 7 kI~lvG~~nvGKTsL~n~l~g~~ 29 (258)
T 3a1s_A 7 KVALAGCPNVGKTSLFNALTGTK 29 (258)
T ss_dssp EEEEECCTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 47899999999999999999964
|
| >2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B* | Back alignment and structure |
|---|
Probab=96.53 E-value=0.001 Score=51.63 Aligned_cols=23 Identities=22% Similarity=0.348 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++++|+.|+|||||++.+.+-.
T Consensus 14 ki~v~G~~~~GKSsli~~l~~~~ 36 (181)
T 2efe_B 14 KLVLLGDVGAGKSSLVLRFVKDQ 36 (181)
T ss_dssp EEEEECCTTSCHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 37899999999999999998653
|
| >2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A | Back alignment and structure |
|---|
Probab=96.53 E-value=0.0012 Score=55.05 Aligned_cols=23 Identities=17% Similarity=0.299 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|+.|||||||++.|.|-.
T Consensus 24 ~I~lvG~~g~GKStl~n~l~~~~ 46 (260)
T 2xtp_A 24 RIILVGKTGTGKSAAGNSILRKQ 46 (260)
T ss_dssp EEEEEECTTSCHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 48899999999999999999854
|
| >3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II} | Back alignment and structure |
|---|
Probab=96.52 E-value=0.0013 Score=53.60 Aligned_cols=26 Identities=27% Similarity=0.346 Sum_probs=22.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
+|-+++|+|+.||||||+.+.|+..+
T Consensus 4 ~~~~I~l~G~~GsGKsT~a~~La~~l 29 (217)
T 3be4_A 4 KKHNLILIGAPGSGKGTQCEFIKKEY 29 (217)
T ss_dssp GCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHh
Confidence 35678999999999999999997543
|
| >1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.51 E-value=0.001 Score=53.69 Aligned_cols=23 Identities=48% Similarity=0.482 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|+.|+|||||++.+++-.
T Consensus 14 ~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 14 SIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998765
|
| >4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis} | Back alignment and structure |
|---|
Probab=96.51 E-value=0.00081 Score=54.39 Aligned_cols=24 Identities=29% Similarity=0.360 Sum_probs=21.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Q 035832 46 SFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 46 e~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
-.++|+|+.|+|||||++.++|-.
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~~ 53 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQK 53 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTCS
T ss_pred CEEEEEcCCCCCHHHHHHHHhCCC
Confidence 358999999999999999999864
|
| >1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A* | Back alignment and structure |
|---|
Probab=96.51 E-value=0.0012 Score=53.50 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~G 67 (245)
.++|.|+.||||||+.+.|+-
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~ 22 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIME 22 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 378999999999999999975
|
| >3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A* | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0013 Score=55.83 Aligned_cols=23 Identities=39% Similarity=0.456 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|+.|||||||++.++|..
T Consensus 5 ~I~lvG~~n~GKSTLin~l~g~~ 27 (274)
T 3i8s_A 5 TIGLIGNPNSGKTTLFNQLTGSR 27 (274)
T ss_dssp EEEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999974
|
| >1zbd_A Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.50 E-value=0.0014 Score=52.16 Aligned_cols=22 Identities=45% Similarity=0.436 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
++|+|+.|+|||||++.+.+-.
T Consensus 11 i~v~G~~~~GKSsli~~l~~~~ 32 (203)
T 1zbd_A 11 ILIIGNSSVGKTSFLFRYADDS 32 (203)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999998754
|
| >2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.00096 Score=52.10 Aligned_cols=23 Identities=30% Similarity=0.472 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|+.|+|||||++.+.+-.
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~~ 34 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEKK 34 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999997643
|
| >1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0014 Score=55.90 Aligned_cols=22 Identities=32% Similarity=0.409 Sum_probs=20.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhC
Q 035832 46 SFGLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 46 e~~~liG~nGsGKSTLl~~l~G 67 (245)
.++.|+|++||||||+.+.|+-
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~ 24 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIA 24 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHH
Confidence 4689999999999999999985
|
| >2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0011 Score=52.72 Aligned_cols=21 Identities=24% Similarity=0.306 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl 68 (245)
++|+|+.|+|||||++.+.+-
T Consensus 17 i~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 17 VIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999999754
|
| >3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A* | Back alignment and structure |
|---|
Probab=96.49 E-value=0.0015 Score=58.83 Aligned_cols=28 Identities=25% Similarity=0.279 Sum_probs=23.9
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCC
Q 035832 41 SLPEKSFGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 41 ~i~~Ge~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.-.+..++.|+|++||||||+.+.|+.-
T Consensus 254 ~~~~~~lIil~G~pGSGKSTla~~L~~~ 281 (416)
T 3zvl_A 254 LSPNPEVVVAVGFPGAGKSTFIQEHLVS 281 (416)
T ss_dssp CCSSCCEEEEESCTTSSHHHHHHHHTGG
T ss_pred CCCCCEEEEEECCCCCCHHHHHHHHHHh
Confidence 3456789999999999999999999753
|
| >4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0015 Score=53.54 Aligned_cols=28 Identities=29% Similarity=0.272 Sum_probs=24.1
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
-+|-++++.|+.||||||+++.|+..+.
T Consensus 4 m~g~~i~~eG~~gsGKsT~~~~l~~~l~ 31 (213)
T 4edh_A 4 MTGLFVTLEGPEGAGKSTNRDYLAERLR 31 (213)
T ss_dssp -CCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCceEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 3688999999999999999999976554
|
| >1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0011 Score=52.73 Aligned_cols=23 Identities=35% Similarity=0.501 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (207)
T 1vg8_A 10 KVIILGDSGVGKTSLMNQYVNKK 32 (207)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 47899999999999999998754
|
| >2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A* | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0011 Score=52.18 Aligned_cols=23 Identities=39% Similarity=0.354 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|+.|+|||||++.+.+-.
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~~ 46 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADDS 46 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 37899999999999999998654
|
| >2h57_A ADP-ribosylation factor-like protein 6; GTP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GTP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.48 E-value=0.0011 Score=52.32 Aligned_cols=23 Identities=35% Similarity=0.418 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|+.|+|||||++.+.+-.
T Consensus 23 ki~v~G~~~~GKSsli~~l~~~~ 45 (190)
T 2h57_A 23 HVLCLGLDNSGKTTIINKLKPSN 45 (190)
T ss_dssp EEEEEECTTSSHHHHHHHTSCGG
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998865
|
| >3cnl_A YLQF, putative uncharacterized protein; circular permutation, GNP, signaling protein; HET: GNP; 2.00A {Thermotoga maritima} PDB: 3cnn_A* 3cno_A* | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0016 Score=55.14 Aligned_cols=30 Identities=30% Similarity=0.486 Sum_probs=22.9
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCcce
Q 035832 46 SFGLIFGRSGSGKTTLLQLLAGLSKPTSGS 75 (245)
Q Consensus 46 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~ 75 (245)
-.++++|.+|+|||||++.|.|-.....|.
T Consensus 100 ~~v~~vG~~~vGKSslin~l~~~~~~~~~~ 129 (262)
T 3cnl_A 100 ARVLIVGVPNTGKSTIINKLKGKRASSVGA 129 (262)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTTCC-----
T ss_pred hheEEeCCCCCCHHHHHHHHhcccccccCC
Confidence 478999999999999999999987654443
|
| >4bas_A ADP-ribosylation factor, putative (small GTPase, putative); hydrolase; HET: GNP; 2.00A {Trypanosoma brucei TREU927} | Back alignment and structure |
|---|
Probab=96.47 E-value=0.0015 Score=51.56 Aligned_cols=23 Identities=26% Similarity=0.341 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|+.|+|||||++.+++-.
T Consensus 19 ki~v~G~~~~GKSsl~~~l~~~~ 41 (199)
T 4bas_A 19 QVVMCGLDNSGKTTIINQVKPAQ 41 (199)
T ss_dssp EEEEECCTTSCHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999999853
|
| >3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0024 Score=49.61 Aligned_cols=21 Identities=24% Similarity=0.229 Sum_probs=18.8
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~G 67 (245)
.++|+|+.|+|||||++.+.+
T Consensus 8 ki~~~G~~~~GKSsli~~l~~ 28 (181)
T 3t5g_A 8 KIAILGYRSVGKSSLTIQFVE 28 (181)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHc
Confidence 378999999999999999983
|
| >3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0011 Score=52.11 Aligned_cols=22 Identities=41% Similarity=0.523 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
++|+|+.|+|||||++.+.+-.
T Consensus 19 i~v~G~~~~GKSsli~~l~~~~ 40 (196)
T 3tkl_A 19 LLLIGDSGVGKSCLLLRFADDT 40 (196)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHHcCC
Confidence 8899999999999999998754
|
| >1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B* | Back alignment and structure |
|---|
Probab=96.46 E-value=0.001 Score=52.17 Aligned_cols=21 Identities=38% Similarity=0.498 Sum_probs=19.3
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl 68 (245)
++++|+.|+|||||++.+.+-
T Consensus 10 i~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 10 IVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 689999999999999999865
|
| >2qu8_A Putative nucleolar GTP-binding protein 1; GTPase, malaria, structural genomics, structural genomics consortium, SGC, unknown function; HET: GDP; 2.01A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.46 E-value=0.0015 Score=53.37 Aligned_cols=23 Identities=13% Similarity=0.358 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|+.|+|||||++.+++-.
T Consensus 31 kI~vvG~~~vGKSsLin~l~~~~ 53 (228)
T 2qu8_A 31 TIILSGAPNVGKSSFMNIVSRAN 53 (228)
T ss_dssp EEEEECSTTSSHHHHHHHHTTTC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57899999999999999998853
|
| >2gf0_A GTP-binding protein DI-RAS1; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, transport protein; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0011 Score=52.41 Aligned_cols=22 Identities=27% Similarity=0.437 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.++|+|+.|+|||||++.+.+-
T Consensus 10 ki~vvG~~~~GKSsli~~l~~~ 31 (199)
T 2gf0_A 10 RVVVFGAGGVGKSSLVLRFVKG 31 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHcC
Confidence 4889999999999999999873
|
| >2o52_A RAS-related protein RAB-4B; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.20A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.45 E-value=0.0014 Score=52.36 Aligned_cols=23 Identities=30% Similarity=0.452 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|+.|+|||||++.+.+-.
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~~ 49 (200)
T 2o52_A 27 KFLVIGSAGTGKSCLLHQFIENK 49 (200)
T ss_dssp EEEEEESTTSSHHHHHHHHHC--
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 37899999999999999998753
|
| >3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228} | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0015 Score=57.46 Aligned_cols=25 Identities=32% Similarity=0.254 Sum_probs=22.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Q 035832 46 SFGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 46 e~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
.+++|+||+|||||||.+.|+..+.
T Consensus 8 ~lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 8 FLIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCcCcHHHHHHHHHHHcC
Confidence 3799999999999999999987653
|
| >3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A* | Back alignment and structure |
|---|
Probab=96.44 E-value=0.0017 Score=54.25 Aligned_cols=27 Identities=30% Similarity=0.450 Sum_probs=24.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
+|.++++.|++||||||+++.|+..+.
T Consensus 26 ~~~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 26 NAKFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CCCEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 689999999999999999999987654
|
| >1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0019 Score=53.13 Aligned_cols=26 Identities=27% Similarity=0.289 Sum_probs=22.4
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.+-.+.|+|+.||||||+.+.|+-.+
T Consensus 15 ~~~~I~l~G~~GsGKsT~a~~La~~l 40 (233)
T 1ak2_A 15 KGVRAVLLGPPGAGKGTQAPKLAKNF 40 (233)
T ss_dssp CCCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 45689999999999999999997543
|
| >2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0011 Score=52.45 Aligned_cols=22 Identities=18% Similarity=0.351 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
++|+|+.|+|||||++.+.+-.
T Consensus 26 i~vvG~~~~GKSsli~~l~~~~ 47 (192)
T 2fg5_A 26 VCLLGDTGVGKSSIVCRFVQDH 47 (192)
T ss_dssp EEEEECTTSSHHHHHHHHHHCC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999997643
|
| >1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A* | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0014 Score=56.56 Aligned_cols=42 Identities=21% Similarity=0.290 Sum_probs=30.3
Q ss_pred hhCCCEEEEeCCCC-CCCHHHHHHHHHHHHHhhc-CceEEEEec
Q 035832 176 VQVPDLLILDEPLA-GLDWKARADVVKLLKHLKK-ELTILVVSH 217 (245)
Q Consensus 176 ~~~p~llllDEPts-~LD~~~~~~i~~~l~~l~~-~~tiii~tH 217 (245)
..+|++|++||+-. .-+...++.++..+..+.+ +..+|++++
T Consensus 96 ~~~~~vL~iDEi~~l~~~~~~~~~l~~~l~~~~~~~~~iii~~~ 139 (324)
T 1l8q_A 96 YKSVDLLLLDDVQFLSGKERTQIEFFHIFNTLYLLEKQIILASD 139 (324)
T ss_dssp HHTCSEEEEECGGGGTTCHHHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred hcCCCEEEEcCcccccCChHHHHHHHHHHHHHHHCCCeEEEEec
Confidence 35699999999855 2344778888988887654 556666665
|
| >1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ... | Back alignment and structure |
|---|
Probab=96.43 E-value=0.0012 Score=51.27 Aligned_cols=22 Identities=27% Similarity=0.277 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.++++|+.|+|||||++.+.+-
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999988743
|
| >3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii} | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0018 Score=54.62 Aligned_cols=28 Identities=29% Similarity=0.401 Sum_probs=24.2
Q ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 42 LPEKSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 42 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
+.++.-+.|.||+|+|||||++.++...
T Consensus 48 ~~~~~~~ll~G~~GtGKT~la~~la~~~ 75 (285)
T 3h4m_A 48 IEPPKGILLYGPPGTGKTLLAKAVATET 75 (285)
T ss_dssp CCCCSEEEEESSSSSSHHHHHHHHHHHT
T ss_pred CCCCCeEEEECCCCCcHHHHHHHHHHHh
Confidence 3567779999999999999999998754
|
| >1zj6_A ADP-ribosylation factor-like protein 5; ARL, GTP-binding, transport protein; HET: G3D; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0015 Score=51.35 Aligned_cols=22 Identities=32% Similarity=0.329 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.++++|+.|+|||||++.+.+-
T Consensus 18 ~i~v~G~~~~GKssl~~~l~~~ 39 (187)
T 1zj6_A 18 KVIIVGLDNAGKTTILYQFSMN 39 (187)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 5789999999999999999864
|
| >2cjw_A GTP-binding protein GEM; nucleotide-binding, small GTPase, conformational change, cysteine-modified, G-protein hydrolase; HET: GDP; 2.10A {Homo sapiens} PDB: 2cjw_B* 2ht6_A* | Back alignment and structure |
|---|
Probab=96.42 E-value=0.0013 Score=52.45 Aligned_cols=21 Identities=38% Similarity=0.683 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~G 67 (245)
.++|+|++|+|||||++.++|
T Consensus 8 kv~lvG~~~vGKSsL~~~~~~ 28 (192)
T 2cjw_A 8 RVVLIGEQGVGKSTLANIFAG 28 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 388999999999999999986
|
| >3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0017 Score=50.54 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl 68 (245)
++|+|+.|+|||||++.+.+-
T Consensus 21 i~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 21 LVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp EEEECSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 689999999999999998854
|
| >2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0013 Score=53.22 Aligned_cols=24 Identities=33% Similarity=0.271 Sum_probs=20.9
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Q 035832 46 SFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 46 e~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
-.++|+|+.|||||||++.+++-.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~ 54 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERI 54 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 478999999999999999988653
|
| >1z06_A RAS-related protein RAB-33B; RAB GTPase, RAB33B GTPase, vesicular trafficking, protein transport; HET: GNP; 1.81A {Mus musculus} SCOP: c.37.1.8 PDB: 2g77_B* | Back alignment and structure |
|---|
Probab=96.40 E-value=0.0013 Score=51.68 Aligned_cols=22 Identities=27% Similarity=0.247 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ki~v~G~~~~GKSsli~~l~~~ 43 (189)
T 1z06_A 22 KIIVIGDSNVGKTCLTYRFCAG 43 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999754
|
| >1jwy_B Dynamin A GTPase domain; dynamin, GTPase, GDP, myosin, fusion-protein, hydrolase; HET: BGC ADP GDP; 2.30A {Dictyostelium discoideum} SCOP: c.37.1.8 PDB: 1jx2_B* | Back alignment and structure |
|---|
Probab=96.39 E-value=0.0016 Score=55.81 Aligned_cols=24 Identities=25% Similarity=0.403 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
.++|+|+.|||||||++.|+|...
T Consensus 26 ~I~vvG~~~~GKSTlln~l~g~~~ 49 (315)
T 1jwy_B 26 QIVVVGSQSSGKSSVLENIVGRDF 49 (315)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCC
T ss_pred eEEEEcCCCCCHHHHHHHHHCCCc
Confidence 589999999999999999999753
|
| >2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0018 Score=52.08 Aligned_cols=23 Identities=39% Similarity=0.382 Sum_probs=20.6
Q ss_pred EEEECCCCCcHHHHHHHHhCCCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
++|+|+.|+|||||++.+.+-..
T Consensus 28 i~vvG~~~~GKSsLi~~l~~~~~ 50 (217)
T 2f7s_A 28 LLALGDSGVGKTTFLYRYTDNKF 50 (217)
T ss_dssp EEEESCTTSSHHHHHHHHHCSCC
T ss_pred EEEECcCCCCHHHHHHHHhcCCC
Confidence 78999999999999999987643
|
| >2a5j_A RAS-related protein RAB-2B; GTPase, signal transduction, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.50A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z0a_A* | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0014 Score=51.78 Aligned_cols=22 Identities=32% Similarity=0.504 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
++|+|+.|+|||||++.+.+-.
T Consensus 24 i~v~G~~~~GKSsli~~l~~~~ 45 (191)
T 2a5j_A 24 YIIIGDTGVGKSCLLLQFTDKR 45 (191)
T ss_dssp EEEESSTTSSHHHHHHHHHHSC
T ss_pred EEEECcCCCCHHHHHHHHhcCC
Confidence 7899999999999999998653
|
| >2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.0017 Score=50.49 Aligned_cols=28 Identities=29% Similarity=0.351 Sum_probs=23.2
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
..+..+.|.||.|+|||||++.++....
T Consensus 41 ~~~~~vll~G~~G~GKT~la~~~~~~~~ 68 (187)
T 2p65_A 41 RTKNNPILLGDPGVGKTAIVEGLAIKIV 68 (187)
T ss_dssp SSSCEEEEESCGGGCHHHHHHHHHHHHH
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHHHH
Confidence 3456788999999999999999987653
|
| >3oes_A GTPase rhebl1; small GTPase, structural genomics, structural genomics conso SGC, hydrolase; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0012 Score=52.59 Aligned_cols=23 Identities=26% Similarity=0.235 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|+.|+|||||++.+.+-.
T Consensus 26 ki~vvG~~~~GKSsli~~l~~~~ 48 (201)
T 3oes_A 26 KVVILGYRCVGKTSLAHQFVEGE 48 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCcCHHHHHHHHHhCC
Confidence 47899999999999999998754
|
| >2h17_A ADP-ribosylation factor-like protein 5A; GDP, GTPase, membrane trafficking, structural genomics consortium, SGC, transport protein; HET: GDP; 1.70A {Homo sapiens} PDB: 2h16_A* 1z6y_A* 1yzg_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0014 Score=51.32 Aligned_cols=23 Identities=30% Similarity=0.317 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++++|+.|+|||||++.+.+-.
T Consensus 23 ~i~v~G~~~~GKSsli~~l~~~~ 45 (181)
T 2h17_A 23 KVIIVGLDNAGKTTILYQFSMNE 45 (181)
T ss_dssp EEEEEEETTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998753
|
| >3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii} | Back alignment and structure |
|---|
Probab=96.37 E-value=0.0031 Score=50.24 Aligned_cols=34 Identities=24% Similarity=0.220 Sum_probs=27.2
Q ss_pred ceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhC
Q 035832 33 DILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 33 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~G 67 (245)
..++..-+.+ .|.-+.|.|+||+|||||...+..
T Consensus 5 ~~lHas~v~v-~G~gvli~G~SGaGKStlal~L~~ 38 (181)
T 3tqf_A 5 QTWHANFLVI-DKMGVLITGEANIGKSELSLALID 38 (181)
T ss_dssp EEEESEEEEE-TTEEEEEEESSSSSHHHHHHHHHH
T ss_pred EEEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHHH
Confidence 4566666666 588899999999999999887753
|
| >4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A* | Back alignment and structure |
|---|
Probab=96.37 E-value=0.002 Score=52.84 Aligned_cols=27 Identities=26% Similarity=0.350 Sum_probs=24.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
+|.++.+-|+.||||||+++.|...+.
T Consensus 2 ~g~~i~~eG~~gsGKsT~~~~l~~~l~ 28 (213)
T 4tmk_A 2 RSKYIVIEGLEGAGKTTARNVVVETLE 28 (213)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHH
Confidence 588999999999999999999987654
|
| >3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus} | Back alignment and structure |
|---|
Probab=96.36 E-value=0.0019 Score=56.75 Aligned_cols=26 Identities=27% Similarity=0.401 Sum_probs=23.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
++.+++|+||.|||||||...|+.-+
T Consensus 39 ~~~lIvI~GPTgsGKTtLa~~LA~~l 64 (339)
T 3a8t_A 39 KEKLLVLMGATGTGKSRLSIDLAAHF 64 (339)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHTTS
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHC
Confidence 56789999999999999999999866
|
| >3llu_A RAS-related GTP-binding protein C; structural genomics consortium, SGC, cytoplasm, nucleotide-binding, nucleus, phosphoprotein; HET: GNP; 1.40A {Homo sapiens} PDB: 2q3f_A* | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0019 Score=51.37 Aligned_cols=24 Identities=21% Similarity=0.253 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
.++|+|+.|+|||||++.+.+-..
T Consensus 22 ki~~vG~~~vGKTsLi~~l~~~~~ 45 (196)
T 3llu_A 22 RILLMGLRRSGKSSIQKVVFHKMS 45 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHSCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhcCC
Confidence 478999999999999999998654
|
| >3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A | Back alignment and structure |
|---|
Probab=96.35 E-value=0.002 Score=56.15 Aligned_cols=25 Identities=28% Similarity=0.280 Sum_probs=22.0
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 45 KSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 45 Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
+.+++|+||+|||||||...|+--+
T Consensus 3 ~~~i~i~GptgsGKt~la~~La~~~ 27 (322)
T 3exa_A 3 EKLVAIVGPTAVGKTKTSVMLAKRL 27 (322)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHTT
T ss_pred CcEEEEECCCcCCHHHHHHHHHHhC
Confidence 4578999999999999999998654
|
| >2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0019 Score=52.37 Aligned_cols=25 Identities=20% Similarity=0.137 Sum_probs=21.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 45 KSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 45 Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
+-+++|+|+.||||||+.+.|+..+
T Consensus 3 ~~~i~i~G~~gsGkst~~~~l~~~~ 27 (219)
T 2h92_A 3 AINIALDGPAAAGKSTIAKRVASEL 27 (219)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhc
Confidence 4578999999999999999998643
|
| >2q3h_A RAS homolog gene family, member U; GTPase, structural genomics, structural genomics consortium,; HET: GDP; 1.73A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0019 Score=51.22 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|+.|+|||||++.+.+-.
T Consensus 22 ki~~~G~~~~GKssl~~~l~~~~ 44 (201)
T 2q3h_A 22 KCVLVGDGAVGKTSLVVSYTTNG 44 (201)
T ss_dssp EEEEECSTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48899999999999999998653
|
| >1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11 | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0019 Score=59.25 Aligned_cols=36 Identities=25% Similarity=0.242 Sum_probs=30.0
Q ss_pred eeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Q 035832 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 34 il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
+++.+ +.+-+|+..+|+|++|+|||||++.|+.-..
T Consensus 141 ~ID~L-~pi~kGq~~~i~G~sGvGKTtL~~~l~~~~~ 176 (473)
T 1sky_E 141 VVDLL-APYIKGGKIGLFGGAGVGKTVLIQELIHNIA 176 (473)
T ss_dssp HHHHH-SCEETTCEEEEECCSSSCHHHHHHHHHHHHH
T ss_pred HHHHH-hhhccCCEEEEECCCCCCccHHHHHHHhhhh
Confidence 45555 6677899999999999999999999986544
|
| >3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.35 E-value=0.0013 Score=51.91 Aligned_cols=22 Identities=41% Similarity=0.427 Sum_probs=20.0
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
++|+|+.|+|||||++.+.+-.
T Consensus 26 i~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 26 LLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEECCCCcCHHHHHHHHhcCC
Confidence 7899999999999999998754
|
| >3reg_A RHO-like small GTPase; cytoskeleton, nucleotide-binding, GTP-binding, signaling Pro lipoprotein, prenylation; HET: GSP; 1.80A {Entamoeba histolytica} PDB: 3ref_B* 4dvg_A* | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0015 Score=51.64 Aligned_cols=23 Identities=26% Similarity=0.265 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|+.|+|||||++.+.+-.
T Consensus 25 ki~~vG~~~~GKSsl~~~l~~~~ 47 (194)
T 3reg_A 25 KIVVVGDGAVGKTCLLLAFSKGE 47 (194)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37899999999999999998753
|
| >2ew1_A RAS-related protein RAB-30; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.34 E-value=0.0013 Score=52.88 Aligned_cols=22 Identities=27% Similarity=0.388 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.++|+|++|+|||||++.+.+-
T Consensus 28 ki~lvG~~~vGKSsLi~~l~~~ 49 (201)
T 2ew1_A 28 KIVLIGNAGVGKTCLVRRFTQG 49 (201)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 3789999999999999988754
|
| >2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0016 Score=51.69 Aligned_cols=22 Identities=36% Similarity=0.481 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.++|+|+.|+|||||++.+.+-
T Consensus 30 ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 30 KLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999999864
|
| >1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A* | Back alignment and structure |
|---|
Probab=96.33 E-value=0.0015 Score=51.44 Aligned_cols=22 Identities=32% Similarity=0.280 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.++|+|+.|+|||||++.+.+-
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 3789999999999999999864
|
| >3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0017 Score=53.47 Aligned_cols=29 Identities=28% Similarity=0.363 Sum_probs=24.0
Q ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHhC
Q 035832 39 SFSLPEKSFGLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 39 sl~i~~Ge~~~liG~nGsGKSTLl~~l~G 67 (245)
+-.+.+..++.|+||.||||+|..+.|+-
T Consensus 23 ~~~~~k~kiI~llGpPGsGKgTqa~~L~~ 51 (217)
T 3umf_A 23 DQKLAKAKVIFVLGGPGSGKGTQCEKLVQ 51 (217)
T ss_dssp -CCTTSCEEEEEECCTTCCHHHHHHHHHH
T ss_pred chhccCCcEEEEECCCCCCHHHHHHHHHH
Confidence 33456778999999999999999999984
|
| >2j1l_A RHO-related GTP-binding protein RHOD; GTPase, membrane, prenylation, hydrolase, nucleotide-binding, methylation, lipoprotein, endosome DYNA; HET: GDP; 2.5A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0018 Score=52.27 Aligned_cols=22 Identities=36% Similarity=0.519 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.++|+|+.|+|||||++.+.+-
T Consensus 36 ki~vvG~~~vGKSsli~~l~~~ 57 (214)
T 2j1l_A 36 KVVLVGDGGCGKTSLLMVFADG 57 (214)
T ss_dssp EEEEEECTTSSHHHHHHHHHC-
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 4789999999999999999874
|
| >2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A* | Back alignment and structure |
|---|
Probab=96.32 E-value=0.0028 Score=51.62 Aligned_cols=36 Identities=28% Similarity=0.227 Sum_probs=29.8
Q ss_pred ceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 33 DILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 33 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
..++..-+.+ .|..++|+||+|||||||...|+.-.
T Consensus 23 ~~lHa~~v~~-~g~~ilI~GpsGsGKStLA~~La~~g 58 (205)
T 2qmh_A 23 RSMHGVLVDI-YGLGVLITGDSGVGKSETALELVQRG 58 (205)
T ss_dssp CCEESEEEEE-TTEEEEEECCCTTTTHHHHHHHHTTT
T ss_pred eeeeEEEEEE-CCEEEEEECCCCCCHHHHHHHHHHhC
Confidence 4577777776 58889999999999999999987643
|
| >2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A* | Back alignment and structure |
|---|
Probab=96.31 E-value=0.002 Score=55.77 Aligned_cols=27 Identities=30% Similarity=0.321 Sum_probs=24.5
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhC
Q 035832 41 SLPEKSFGLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 41 ~i~~Ge~~~liG~nGsGKSTLl~~l~G 67 (245)
-+++|+++.|.||+|+|||||...++.
T Consensus 94 Gl~~g~i~~i~G~~gsGKT~la~~la~ 120 (322)
T 2i1q_A 94 GLESQSVTEFAGVFGSGKTQIMHQSCV 120 (322)
T ss_dssp SEETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCeEEEEECCCCCCHHHHHHHHHH
Confidence 478999999999999999999987774
|
| >1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0016 Score=51.15 Aligned_cols=23 Identities=39% Similarity=0.482 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|+.|+|||||++.+.+-.
T Consensus 17 ~i~v~G~~~~GKssli~~l~~~~ 39 (195)
T 1x3s_A 17 KILIIGESGVGKSSLLLRFTDDT 39 (195)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 47899999999999999998653
|
| >3cph_A RAS-related protein SEC4; RAB GTPase, prenylation, vesicular transport, cytoplasm, cytoplasmic vesicle, exocytosis, GTP-binding; HET: GDP; 2.90A {Saccharomyces cerevisiae} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.31 E-value=0.0016 Score=52.08 Aligned_cols=23 Identities=35% Similarity=0.387 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|+.|+|||||++.+.+-.
T Consensus 22 ~i~v~G~~~~GKSsli~~l~~~~ 44 (213)
T 3cph_A 22 KILLIGDSGVGKSCLLVRFVEDK 44 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48899999999999999998643
|
| >2bcg_Y Protein YP2, GTP-binding protein YPT1; RABGTPase, geranylgeranylation, vesicular transport, protein transport; HET: GDP GER; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ukv_Y* 3cue_F* 1yzn_A* 3sfv_A* 2wwx_A 2fol_A* 3nkv_A* 3jza_A* 2rhd_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0014 Score=52.29 Aligned_cols=23 Identities=35% Similarity=0.443 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKSsli~~l~~~~ 32 (206)
T 2bcg_Y 10 KLLLIGNSGVGKSCLLLRFSDDT 32 (206)
T ss_dssp EEEEEESTTSSHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 37899999999999999998643
|
| >2p5s_A RAS and EF-hand domain containing; G-protein, RAB, GDP, structural genomics, SGC, structural genomics consortium, signaling protein; HET: GDP; 2.15A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0016 Score=51.81 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|+.|+|||||++.+.+-.
T Consensus 30 ki~v~G~~~~GKSsli~~l~~~~ 52 (199)
T 2p5s_A 30 KIVLAGDAAVGKSSFLMRLCKNE 52 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHHhCC
Confidence 57899999999999999998654
|
| >3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A* | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0023 Score=52.67 Aligned_cols=29 Identities=31% Similarity=0.296 Sum_probs=26.0
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCC
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGLSKP 71 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p 71 (245)
.+|.++.+-|+.||||||+.+.|+-.+..
T Consensus 3 ~~g~~i~~eG~~g~GKst~~~~l~~~l~~ 31 (216)
T 3tmk_A 3 GRGKLILIEGLDRTGKTTQCNILYKKLQP 31 (216)
T ss_dssp CCCCEEEEEECSSSSHHHHHHHHHHHHCS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHhcc
Confidence 47999999999999999999999887765
|
| >2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0013 Score=51.04 Aligned_cols=22 Identities=23% Similarity=0.238 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.++++|+.|+|||||++.+++-
T Consensus 9 ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 9 RLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEECCGGGCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 3789999999999999998864
|
| >2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1 | Back alignment and structure |
|---|
Probab=96.28 E-value=0.0021 Score=53.13 Aligned_cols=27 Identities=26% Similarity=0.202 Sum_probs=23.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
+|.+++|.|+.||||||+.+.|+..++
T Consensus 1 ~~~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 1 GPRRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp CCEEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred CCeEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 366899999999999999999987653
|
| >2fu5_C RAS-related protein RAB-8A; MSS4:RAB8 protein complex, GEF:GTPase nucleotide free complex; 2.00A {Mus musculus} SCOP: c.37.1.8 PDB: 3qbt_A* 3tnf_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0013 Score=51.31 Aligned_cols=23 Identities=35% Similarity=0.384 Sum_probs=8.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKssl~~~l~~~~ 32 (183)
T 2fu5_C 10 KLLLIGDSGVGKTCVLFRFSEDA 32 (183)
T ss_dssp EEEEECCCCC-------------
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 37899999999999999998654
|
| >3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0022 Score=56.03 Aligned_cols=24 Identities=29% Similarity=0.347 Sum_probs=21.6
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Q 035832 46 SFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 46 e~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.+++|+||+|||||||.+.|+..+
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l 29 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADAL 29 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHc
Confidence 478999999999999999999765
|
| >2b6h_A ADP-ribosylation factor 5; membrane trafficking, GDP, structural genomics, structural G consortium, SGC, protein transport; HET: GDP; 1.76A {Homo sapiens} SCOP: c.37.1.8 PDB: 1z6x_A* 3aq4_A* | Back alignment and structure |
|---|
Probab=96.27 E-value=0.0019 Score=51.23 Aligned_cols=24 Identities=33% Similarity=0.235 Sum_probs=20.6
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Q 035832 46 SFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 46 e~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
=.++|+|+.|+|||||++.+.+-.
T Consensus 30 ~ki~v~G~~~vGKSsLi~~l~~~~ 53 (192)
T 2b6h_A 30 MRILMVGLDAAGKTTILYKLKLGE 53 (192)
T ss_dssp EEEEEEESTTSSHHHHHHHHCSSC
T ss_pred cEEEEECCCCCCHHHHHHHHHhCC
Confidence 348999999999999999997643
|
| >3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis} | Back alignment and structure |
|---|
Probab=96.26 E-value=0.0024 Score=52.78 Aligned_cols=28 Identities=43% Similarity=0.444 Sum_probs=24.7
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
.+|-++++.|+.||||||+.+.|+..+.
T Consensus 19 ~~~~~i~~~G~~g~GKst~~~~l~~~l~ 46 (223)
T 3ld9_A 19 PGSMFITFEGIDGSGKTTQSHLLAEYLS 46 (223)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4689999999999999999999986553
|
| >2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.24 E-value=0.0028 Score=52.55 Aligned_cols=27 Identities=30% Similarity=0.364 Sum_probs=22.5
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
....-+.|.||.|+|||||.+.++...
T Consensus 37 ~~~~~vll~G~~GtGKT~la~~la~~~ 63 (262)
T 2qz4_A 37 KVPKGALLLGPPGCGKTLLAKAVATEA 63 (262)
T ss_dssp CCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHh
Confidence 445568899999999999999998743
|
| >2fv8_A H6, RHO-related GTP-binding protein RHOB; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0017 Score=52.12 Aligned_cols=23 Identities=26% Similarity=0.327 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++++|+.|+|||||++.+.+-.
T Consensus 27 ki~vvG~~~~GKSsli~~l~~~~ 49 (207)
T 2fv8_A 27 KLVVVGDGACGKTCLLIVFSKDE 49 (207)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSS
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58899999999999999998753
|
| >3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0019 Score=50.99 Aligned_cols=22 Identities=32% Similarity=0.376 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.++|+|+.|+|||||++.+.+-
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 4789999999999999888654
|
| >2aka_B Dynamin-1; fusion protein, GTPase domain, myosin, contractIle protein; 1.90A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 3l43_A* | Back alignment and structure |
|---|
Probab=96.23 E-value=0.0019 Score=54.77 Aligned_cols=24 Identities=21% Similarity=0.324 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
.++|+|+.|+|||||++.|+|...
T Consensus 28 ~i~vvG~~~~GKSSLln~l~g~~~ 51 (299)
T 2aka_B 28 QIAVVGGQSAGKSSVLENFVGRDF 51 (299)
T ss_dssp EEEEEEBTTSCHHHHHHHHHTSCC
T ss_pred eEEEEeCCCCCHHHHHHHHHCCCc
Confidence 588999999999999999998753
|
| >3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0024 Score=49.45 Aligned_cols=23 Identities=26% Similarity=0.255 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++++|+.|+|||||++.+.+-.
T Consensus 10 ki~v~G~~~~GKssl~~~~~~~~ 32 (182)
T 3bwd_D 10 KCVTVGDGAVGKTCLLISYTSNT 32 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998643
|
| >1gwn_A RHO-related GTP-binding protein RHOE; GTPase, inactive GTPase, signal transduction; HET: GTP; 2.1A {Mus musculus} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.22 E-value=0.0017 Score=52.37 Aligned_cols=23 Identities=35% Similarity=0.408 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|+.|+|||||++.+++-.
T Consensus 30 ki~vvG~~~vGKSsLi~~l~~~~ 52 (205)
T 1gwn_A 30 KIVVVGDSQCGKTALLHVFAKDC 52 (205)
T ss_dssp EEEEEESTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998763
|
| >3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A* | Back alignment and structure |
|---|
Probab=96.21 E-value=0.0024 Score=53.65 Aligned_cols=23 Identities=30% Similarity=0.551 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|+.|+|||||++.+.|-.
T Consensus 38 ~I~lvG~~g~GKSSLin~l~~~~ 60 (262)
T 3def_A 38 TVLVLGKGGVGKSSTVNSLIGEQ 60 (262)
T ss_dssp EEEEEECTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999854
|
| >3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A* | Back alignment and structure |
|---|
Probab=96.20 E-value=0.033 Score=58.32 Aligned_cols=145 Identities=16% Similarity=0.106 Sum_probs=0.0
Q ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHh
Q 035832 42 LPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIF 121 (245)
Q Consensus 42 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~ 121 (245)
+++|+++.|.||+|+|||||...++.......+.+.| +-+..+...
T Consensus 380 l~~G~lilI~G~pGsGKTtLaLq~a~~~~~~G~~vly----------------------is~E~s~~~------------ 425 (1706)
T 3cmw_A 380 LPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAF----------------------IDAEHALDP------------ 425 (1706)
T ss_dssp EETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEE----------------------ECTTSCCCH------------
T ss_pred cCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEE----------------------EEccCchHH------------
Q ss_pred cCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCH--------
Q 035832 122 GWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDW-------- 193 (245)
Q Consensus 122 ~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~-------- 193 (245)
...+.+|++.. .=.....-+..|-....-..+--.+|+++++|..++=...
T Consensus 426 --------------------~~a~~lGvd~~-~L~i~~~~~~e~~l~~l~~lv~~~~~~lVVIDSL~al~~~~e~e~~~g 484 (1706)
T 3cmw_A 426 --------------------IYARKLGVDID-NLLCSQPDTGEQALEICDALARSGAVDVIVVDSVAALTPKAEIEGEIG 484 (1706)
T ss_dssp --------------------HHHHHTTCCGG-GCEEECCSSHHHHHHHHHHHHHHTCCSEEEESCSTTCCCHHHHHSCTT
T ss_pred --------------------HHHHHcCCCHH-HeEEcCCCCHHHHHHHHHHHHHhcCCCEEEECCHHHhhcccccccccc
Q ss_pred -----HHHHHHHHHHHHh----hc-CceEEEEecChhH----------------HHhhccEEEEEeCCeEEEec
Q 035832 194 -----KARADVVKLLKHL----KK-ELTILVVSHDLKE----------------MAALVDHSWRMDMGGFLVEQ 241 (245)
Q Consensus 194 -----~~~~~i~~~l~~l----~~-~~tiii~tHd~~~----------------~~~~~d~v~~l~~G~i~~~~ 241 (245)
...+.+.+.++.+ ++ +++||+++|-... +..++|-++.+.....+.++
T Consensus 485 ~~~~~~q~r~~s~~Lr~L~~~ak~~~v~VI~inQl~~~vg~~fg~~~~p~gg~ale~~ADv~L~L~R~~~~~~g 558 (1706)
T 3cmw_A 485 DSHMGLAARMMSQAMRKLAGNLKQSNTLLIFINQIRMKIGVMFGNPETTTGGNALKFYASVRLDIRRIGAVKEG 558 (1706)
T ss_dssp CCCTTHHHHHHHHHHHHHHHHHHHHTCEEEEEECEEECTTCCSSCCEEESSCSHHHHHEEEEEEEEEEEEEEET
T ss_pred ccchhHHHHHHHHHHHHHHHHHHHcCCEEEEEeecccccccccCCCccCCCCcceeeeCCEEEEEEeccccccC
|
| >2g3y_A GTP-binding protein GEM; small GTPase, GDP, inactive state, RGK family, structur genomics, structural genomics consortium, SGC, signaling PR; HET: GDP; 2.40A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0027 Score=51.80 Aligned_cols=23 Identities=35% Similarity=0.647 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|++|+|||||++.++|..
T Consensus 39 kVvlvG~~~vGKSSLl~r~~~~~ 61 (211)
T 2g3y_A 39 RVVLIGEQGVGKSTLANIFAGVH 61 (211)
T ss_dssp EEEEECCTTSSHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHhCC
Confidence 48999999999999999998743
|
| >1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.0024 Score=53.76 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++++|+.|+|||||++.|.|-.
T Consensus 41 ~I~vvG~~g~GKSSLin~l~~~~ 63 (270)
T 1h65_A 41 TILVMGKGGVGKSSTVNSIIGER 63 (270)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999864
|
| >2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A* | Back alignment and structure |
|---|
Probab=96.18 E-value=0.00069 Score=56.76 Aligned_cols=30 Identities=33% Similarity=0.565 Sum_probs=23.4
Q ss_pred eeeEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Q 035832 37 GVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 37 ~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl 68 (245)
++.+....| +.|.||+|+|||||++.++..
T Consensus 38 ~~~~~~~~~--vll~G~~GtGKT~la~~la~~ 67 (268)
T 2r62_A 38 NLGAKIPKG--VLLVGPPGTGKTLLAKAVAGE 67 (268)
T ss_dssp HHSCCCCSC--CCCBCSSCSSHHHHHHHHHHH
T ss_pred HCCCCCCce--EEEECCCCCcHHHHHHHHHHH
Confidence 334444555 779999999999999999864
|
| >2fh5_B SR-beta, signal recognition particle receptor beta subunit; endomembrane targeting, GTPase, GAP, longin domain, SEDL, transport protein; HET: GTP; 2.45A {Mus musculus} SCOP: c.37.1.8 PDB: 2go5_2 | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0028 Score=50.83 Aligned_cols=23 Identities=35% Similarity=0.249 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|+.|+|||||++.+++-.
T Consensus 9 ki~vvG~~~~GKTsli~~l~~~~ 31 (214)
T 2fh5_B 9 AVLFVGLCDSGKTLLFVRLLTGQ 31 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998654
|
| >2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii} | Back alignment and structure |
|---|
Probab=96.17 E-value=0.0035 Score=51.37 Aligned_cols=61 Identities=10% Similarity=0.051 Sum_probs=38.2
Q ss_pred HHHhhCCCEEEEeCCCC----CCCHHHHHHHHHHHHHhhc--CceEEEEecChhH----------HHhhccEEEEEe
Q 035832 173 IQLVQVPDLLILDEPLA----GLDWKARADVVKLLKHLKK--ELTILVVSHDLKE----------MAALVDHSWRMD 233 (245)
Q Consensus 173 ral~~~p~llllDEPts----~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~----------~~~~~d~v~~l~ 233 (245)
.+--.+|+++++|--+. .-|.....++...|..+.+ +.++++++|-... ....||-|+.|.
T Consensus 130 ~~~~~~~~~vviD~~~~l~~~~~~~~~~~~~~~~L~~~a~~~~i~vi~~~q~~~~~~~~~~~~~~~~~~aD~vi~l~ 206 (251)
T 2zts_A 130 VVKAINAKRLVIDSIPSIALRLEEERKIREVLLKLNTILLEMGVTTILTTEAPDPQHGKLSRYGIEEFIARGVIVLD 206 (251)
T ss_dssp HHHHTTCSEEEEECHHHHHHHSSSGGGHHHHHHHHHHHHHHHCCEEEEEECCC----CCSSSSSCGGGGCSEEEEEE
T ss_pred HHHhcCCcEEEEEcHHHHhhhccChHHHHHHHHHHHHHHHHcCCCeEEEEEEecccccccccCCceeEEeeEEEEEE
Confidence 33456889999995431 1134445566666666643 6899999885321 245789888875
|
| >3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli} | Back alignment and structure |
|---|
Probab=96.14 E-value=0.0035 Score=47.67 Aligned_cols=38 Identities=16% Similarity=0.339 Sum_probs=27.6
Q ss_pred CEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecC
Q 035832 180 DLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHD 218 (245)
Q Consensus 180 ~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd 218 (245)
.+|++||. ..|++..+..+++.+.....+..+|++|+.
T Consensus 78 g~l~ldei-~~l~~~~q~~Ll~~l~~~~~~~~~I~~t~~ 115 (145)
T 3n70_A 78 GTLVLSHP-EHLTREQQYHLVQLQSQEHRPFRLIGIGDT 115 (145)
T ss_dssp SCEEEECG-GGSCHHHHHHHHHHHHSSSCSSCEEEEESS
T ss_pred cEEEEcCh-HHCCHHHHHHHHHHHhhcCCCEEEEEECCc
Confidence 57899997 478888888888888544444566777663
|
| >4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A* | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0022 Score=58.43 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.++|+|++|+|||||++.|+|-
T Consensus 25 ~V~lvG~~nvGKSTL~n~l~~~ 46 (456)
T 4dcu_A 25 VVAIVGRPNVGKSTIFNRIAGE 46 (456)
T ss_dssp EEEEECSSSSSHHHHHHHHEEE
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 6899999999999999999883
|
| >2gco_A H9, RHO-related GTP-binding protein RHOC; GTPase,signaling protein, signaling Pro; HET: GNP; 1.40A {Homo sapiens} PDB: 2gcn_A* 2gcp_A* 1z2c_A* 1x86_B 2rgn_C* 1lb1_B 1s1c_A* 3kz1_E* 3lxr_A* 3lwn_A* 3lw8_A* 1cxz_A* 1a2b_A* 1ow3_B* 1ftn_A* 1cc0_A* 3msx_A* 1xcg_B 3t06_B 1tx4_B* ... | Back alignment and structure |
|---|
Probab=96.13 E-value=0.002 Score=51.42 Aligned_cols=22 Identities=32% Similarity=0.406 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
++|+|+.|+|||||++.+.+-.
T Consensus 28 i~vvG~~~~GKSsli~~l~~~~ 49 (201)
T 2gco_A 28 LVIVGDGACGKTCLLIVFSKDQ 49 (201)
T ss_dssp EEEEESTTSSHHHHHHHHHHSS
T ss_pred EEEECCCCCCHHHHHHHHHhCc
Confidence 7899999999999999998743
|
| >1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20 | Back alignment and structure |
|---|
Probab=96.13 E-value=0.001 Score=57.63 Aligned_cols=42 Identities=12% Similarity=0.209 Sum_probs=33.7
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChh
Q 035832 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLK 220 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~ 220 (245)
++.++++|| ...|++.....+.+.+.+......+|+++++.+
T Consensus 133 ~~~vliiDE-~~~l~~~~~~~Ll~~le~~~~~~~~il~~~~~~ 174 (353)
T 1sxj_D 133 PYKIIILDE-ADSMTADAQSALRRTMETYSGVTRFCLICNYVT 174 (353)
T ss_dssp SCEEEEETT-GGGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred CceEEEEEC-CCccCHHHHHHHHHHHHhcCCCceEEEEeCchh
Confidence 667999999 788999999999988887765556777776654
|
| >1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ... | Back alignment and structure |
|---|
Probab=96.13 E-value=0.0018 Score=54.38 Aligned_cols=27 Identities=26% Similarity=0.288 Sum_probs=23.9
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++-+++|.|+.||||||+.+.|+..+
T Consensus 22 ~~~~~I~ieG~~GsGKST~~~~L~~~l 48 (263)
T 1p5z_B 22 TRIKKISIEGNIAAGKSTFVNILKQLC 48 (263)
T ss_dssp -CCEEEEEECSTTSSHHHHHTTTGGGC
T ss_pred cCceEEEEECCCCCCHHHHHHHHHHhc
Confidence 577899999999999999999998766
|
| >4djt_A GTP-binding nuclear protein GSP1; structural genomics, seattle structural genomics center for infectious disease, ssgcid, RAN family; HET: GDP; 1.80A {Encephalitozoon cuniculi} | Back alignment and structure |
|---|
Probab=96.12 E-value=0.0012 Score=53.20 Aligned_cols=22 Identities=27% Similarity=0.339 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
++|+|+.|+|||||++.+++-.
T Consensus 14 i~vvG~~~~GKSsli~~l~~~~ 35 (218)
T 4djt_A 14 ICLIGDGGVGKTTYINRVLDGR 35 (218)
T ss_dssp EEEECCTTSSHHHHHCBCTTCS
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999998654
|
| >2atx_A Small GTP binding protein TC10; GTPase, P-loop, alpha-beta, hydrolase; HET: GNP; 2.65A {Homo sapiens} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0022 Score=50.56 Aligned_cols=22 Identities=32% Similarity=0.326 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.++++|+.|+|||||++.+.+-
T Consensus 20 ki~v~G~~~~GKssli~~l~~~ 41 (194)
T 2atx_A 20 KCVVVGDGAVGKTCLLMSYAND 41 (194)
T ss_dssp EEEEEECTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999999864
|
| >2x77_A ADP-ribosylation factor; GTP-binding protein, small GTPase, nucleotide-binding; HET: GDP; 2.10A {Leishmania major} | Back alignment and structure |
|---|
Probab=96.08 E-value=0.0019 Score=50.68 Aligned_cols=22 Identities=32% Similarity=0.297 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.++++|+.|+|||||++.+.+-
T Consensus 24 ~i~v~G~~~~GKssli~~l~~~ 45 (189)
T 2x77_A 24 RVLMLGLDNAGKTSILYRLHLG 45 (189)
T ss_dssp EEEEEEETTSSHHHHHHHTCCS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999753
|
| >2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B | Back alignment and structure |
|---|
Probab=96.06 E-value=0.00081 Score=61.12 Aligned_cols=41 Identities=29% Similarity=0.270 Sum_probs=30.9
Q ss_pred EEEcCC--CEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcC
Q 035832 40 FSLPEK--SFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRG 80 (245)
Q Consensus 40 l~i~~G--e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 80 (245)
|.+.++ .+++++|++|+||||++..|++.+......|.+-.
T Consensus 92 ~~~~~~~~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~ 134 (432)
T 2v3c_C 92 LELNPKKQNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIA 134 (432)
T ss_dssp CCCCSSSCCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEEC
T ss_pred ccccCCCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 444444 58999999999999999999998764444565533
|
| >2yc2_C IFT27, small RAB-related GTPase; transport protein, cilium, IFT complex; 2.59A {Chlamydomonas reinhardtii} PDB: 2yc4_C | Back alignment and structure |
|---|
Probab=96.06 E-value=0.0013 Score=52.27 Aligned_cols=22 Identities=18% Similarity=0.365 Sum_probs=4.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.++|+|+.|+|||||++.+.+-
T Consensus 22 ~i~v~G~~~~GKssli~~l~~~ 43 (208)
T 2yc2_C 22 KVAVVGEATVGKSALISMFTSK 43 (208)
T ss_dssp EEEEC-----------------
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998876
|
| >2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A* | Back alignment and structure |
|---|
Probab=96.05 E-value=0.0037 Score=49.88 Aligned_cols=51 Identities=16% Similarity=0.242 Sum_probs=33.5
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-cCceEEEEecChh----------HHHhhccEEEEEe
Q 035832 178 VPDLLILDEPLAGLDWKARADVVKLLKHLK-KELTILVVSHDLK----------EMAALVDHSWRMD 233 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~~~~i~~~l~~l~-~~~tiii~tHd~~----------~~~~~~d~v~~l~ 233 (245)
+++++++||--. +++. +.+.|..+. .+..|+++.++.+ .+..++|.+.-|+
T Consensus 76 ~~dvviIDE~Q~-~~~~----~~~~l~~l~~~~~~Vi~~Gl~~~f~~~~f~~~~~ll~~ad~v~~l~ 137 (184)
T 2orw_A 76 DTRGVFIDEVQF-FNPS----LFEVVKDLLDRGIDVFCAGLDLTHKQNPFETTALLLSLADTVIKKK 137 (184)
T ss_dssp TEEEEEECCGGG-SCTT----HHHHHHHHHHTTCEEEEEEESBCTTSCBCHHHHHHHHHCSEEEECC
T ss_pred CCCEEEEECccc-CCHH----HHHHHHHHHHCCCCEEEEeeccccccCCccchHHHHHHhhheEEee
Confidence 578999999743 5543 344444443 3678888888544 2345689987775
|
| >2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A* | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0031 Score=51.10 Aligned_cols=24 Identities=33% Similarity=0.261 Sum_probs=20.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Q 035832 46 SFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 46 e~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
-.++|+|+.|+|||||++-++.-.
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHH
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHh
Confidence 468899999999999998887653
|
| >3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A | Back alignment and structure |
|---|
Probab=96.04 E-value=0.0036 Score=54.39 Aligned_cols=25 Identities=28% Similarity=0.308 Sum_probs=21.9
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 45 KSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 45 Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
..+++|+||+|||||||...|+.-+
T Consensus 10 ~~~i~i~GptgsGKt~la~~La~~~ 34 (316)
T 3foz_A 10 PKAIFLMGPTASGKTALAIELRKIL 34 (316)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHS
T ss_pred CcEEEEECCCccCHHHHHHHHHHhC
Confidence 4578999999999999999998654
|
| >3cpj_B GTP-binding protein YPT31/YPT8; RAB GTPase, prenylation, vesicular transport, acetylation, golgi apparatus, lipoprotein, membrane; HET: GDP; 2.35A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.003 Score=51.22 Aligned_cols=23 Identities=30% Similarity=0.413 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
-++|+|+.|+|||||++.+.+-.
T Consensus 15 ki~v~G~~~vGKSsli~~l~~~~ 37 (223)
T 3cpj_B 15 KIVLIGDSGVGKSNLLSRFTKNE 37 (223)
T ss_dssp EEEEESCTTSSHHHHHHHHHHCC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 37899999999999999998754
|
| >2hup_A RAS-related protein RAB-43; G-protein, GDP, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.05A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.95 E-value=0.0028 Score=50.68 Aligned_cols=23 Identities=22% Similarity=0.247 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|+.|+|||||++.+.+-.
T Consensus 31 ki~vvG~~~vGKSsli~~l~~~~ 53 (201)
T 2hup_A 31 KLVLVGDASVGKTCVVQRFKTGA 53 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhhCC
Confidence 37899999999999999997643
|
| >3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A* | Back alignment and structure |
|---|
Probab=95.91 E-value=0.0044 Score=50.51 Aligned_cols=22 Identities=32% Similarity=0.386 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
++.|+||.||||+|..+.|+--
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~ 23 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKE 23 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 4679999999999999999853
|
| >3q3j_B RHO-related GTP-binding protein RHO6; RAS-binding domain, plexin, small GTPase, structural genomic consortium, SGC; HET: GNP; 1.97A {Homo sapiens} PDB: 2rex_B* 2cls_A* | Back alignment and structure |
|---|
Probab=95.87 E-value=0.0034 Score=50.80 Aligned_cols=22 Identities=36% Similarity=0.409 Sum_probs=19.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.++|+|+.|+|||||++.+.+-
T Consensus 29 ki~vvG~~~vGKSsL~~~l~~~ 50 (214)
T 3q3j_B 29 KLVLVGDVQCGKTAMLQVLAKD 50 (214)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 4789999999999999988764
|
| >2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix} | Back alignment and structure |
|---|
Probab=95.85 E-value=0.0039 Score=54.35 Aligned_cols=28 Identities=29% Similarity=0.490 Sum_probs=24.2
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
..+..+.|.||.|+|||||++.++....
T Consensus 42 ~~~~~vll~G~~G~GKT~l~~~~~~~~~ 69 (387)
T 2v1u_A 42 EKPSNALLYGLTGTGKTAVARLVLRRLE 69 (387)
T ss_dssp CCCCCEEECBCTTSSHHHHHHHHHHHHH
T ss_pred CCCCcEEEECCCCCCHHHHHHHHHHHHH
Confidence 4577899999999999999999987653
|
| >4gzl_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTP binding, membrane, hydrolase; HET: GNP; 2.00A {Homo sapiens} PDB: 3th5_A* 4gzm_A* | Back alignment and structure |
|---|
Probab=95.83 E-value=0.0041 Score=49.80 Aligned_cols=21 Identities=29% Similarity=0.338 Sum_probs=18.6
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~G 67 (245)
.++++|+.|+|||||++.+.+
T Consensus 32 ki~vvG~~~~GKSsLi~~l~~ 52 (204)
T 4gzl_A 32 KCVVVGDGAVGKTCLLISYTT 52 (204)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHHh
Confidence 478999999999999988874
|
| >4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A* | Back alignment and structure |
|---|
Probab=95.80 E-value=0.0052 Score=49.96 Aligned_cols=26 Identities=31% Similarity=0.305 Sum_probs=22.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Q 035832 45 KSFGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 45 Ge~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
|.++++=|+-||||||+++.|+-.+.
T Consensus 2 ~kFI~~EG~dGsGKsTq~~~L~~~L~ 27 (205)
T 4hlc_A 2 SAFITFEGPEGSGKTTVINEVYHRLV 27 (205)
T ss_dssp CEEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCEEEEECCCCCcHHHHHHHHHHHHH
Confidence 56899999999999999999987653
|
| >2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus} | Back alignment and structure |
|---|
Probab=95.79 E-value=0.0048 Score=48.98 Aligned_cols=42 Identities=17% Similarity=0.255 Sum_probs=30.9
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChh
Q 035832 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLK 220 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~ 220 (245)
++.++++||. ..+++.....+.+++.+...+..+|++|+..+
T Consensus 102 ~~~vliiDe~-~~l~~~~~~~l~~~l~~~~~~~~~i~~~~~~~ 143 (226)
T 2chg_A 102 PFKIIFLDEA-DALTADAQAALRRTMEMYSKSCRFILSCNYVS 143 (226)
T ss_dssp SCEEEEEETG-GGSCHHHHHHHHHHHHHTTTTEEEEEEESCGG
T ss_pred CceEEEEeCh-hhcCHHHHHHHHHHHHhcCCCCeEEEEeCChh
Confidence 6789999995 56778877788887776544566777777653
|
| >2j0v_A RAC-like GTP-binding protein ARAC7; nucleotide-binding protein, ROP9, atrac7, membrane, palmitate, RHO GTPase; HET: GDP; 1.78A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=95.76 E-value=0.0036 Score=50.09 Aligned_cols=22 Identities=23% Similarity=0.235 Sum_probs=19.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.++|+|+.|+|||||++.+.+-
T Consensus 11 ki~i~G~~~~GKTsli~~l~~~ 32 (212)
T 2j0v_A 11 KCVTVGDGAVGKTCMLICYTSN 32 (212)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 3789999999999999998754
|
| >3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A* | Back alignment and structure |
|---|
Probab=95.74 E-value=0.0048 Score=55.45 Aligned_cols=24 Identities=33% Similarity=0.320 Sum_probs=20.9
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Q 035832 46 SFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 46 e~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.+++|.||+|||||||.+.|+--+
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~ 26 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKF 26 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHH
T ss_pred cEEEEECcchhhHHHHHHHHHHHC
Confidence 478999999999999999998654
|
| >3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A* | Back alignment and structure |
|---|
Probab=95.73 E-value=0.0058 Score=51.96 Aligned_cols=26 Identities=35% Similarity=0.404 Sum_probs=22.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
++..+.|.||.|+|||||.+.++..+
T Consensus 66 ~~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 66 PTLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45578999999999999999888765
|
| >1puj_A YLQF, conserved hypothetical protein YLQF; structural genomics, nysgxrc T18, GTPase, PSI, protein structure initiative; HET: GNP; 2.00A {Bacillus subtilis} SCOP: c.37.1.8 | Back alignment and structure |
|---|
Probab=95.69 E-value=0.007 Score=51.65 Aligned_cols=29 Identities=34% Similarity=0.439 Sum_probs=22.8
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCcc
Q 035832 46 SFGLIFGRSGSGKTTLLQLLAGLSKPTSG 74 (245)
Q Consensus 46 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G 74 (245)
-.++++|.+|+|||||+|.|.|-.....|
T Consensus 121 ~~v~~vG~~nvGKSsliN~l~~~~~~~~~ 149 (282)
T 1puj_A 121 IRALIIGIPNVGKSTLINRLAKKNIAKTG 149 (282)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTSCCC---
T ss_pred ceEEEEecCCCchHHHHHHHhcCceeecC
Confidence 36899999999999999999997644333
|
| >1wxq_A GTP-binding protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; 2.60A {Pyrococcus horikoshii} SCOP: c.37.1.8 d.15.10.2 | Back alignment and structure |
|---|
Probab=95.58 E-value=0.0057 Score=54.84 Aligned_cols=41 Identities=22% Similarity=0.239 Sum_probs=28.8
Q ss_pred HHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEE
Q 035832 139 NLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLIL 184 (245)
Q Consensus 139 ~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llll 184 (245)
.+.++++.++... +...+|..+..++.-...+...|-++++
T Consensus 181 ~~~~~l~~l~~~~-----~~~~~~~~e~~~l~~~~~~~~kP~i~v~ 221 (397)
T 1wxq_A 181 DVWEAMHKLNLPE-----DPTKWSQDDLLAFASEIRRVNKPMVIAA 221 (397)
T ss_dssp HHHHHHHHTTCCS-----CGGGCCHHHHHHHHHHHHHHHSCEEEEE
T ss_pred HHHHHHHHhccCC-----ccccCCHHHHHHHHHhhhccCCCEEEEE
Confidence 3556666666542 1347899998888777667778988887
|
| >2hjg_A GTP-binding protein ENGA; GTPase ENGA KH-domain, hydrolase; HET: GDP; 2.50A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0054 Score=55.44 Aligned_cols=22 Identities=36% Similarity=0.560 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.++|+|++|+|||||++.|+|-
T Consensus 5 ~V~ivG~~nvGKStL~n~l~~~ 26 (436)
T 2hjg_A 5 VVAIVGRPNVGKSTIFNRIAGE 26 (436)
T ss_dssp EEEEECSTTSSHHHHHHHHEEE
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999985
|
| >3r7w_A Gtpase1, GTP-binding protein GTR1; RAG gtpases, GTR1P, GTR2P, MTOR, protein transport; HET: GNP; 2.77A {Saccharomyces cerevisiae} PDB: 4arz_A* | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0082 Score=51.66 Aligned_cols=22 Identities=36% Similarity=0.566 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.++|+|+.|+|||||++.+.+-
T Consensus 5 KI~lvG~~~vGKSSLi~~l~~~ 26 (307)
T 3r7w_A 5 KLLLMGRSGSGKSSMRSIIFSN 26 (307)
T ss_dssp EEEEECCTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 4789999999999999998765
|
| >3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli} | Back alignment and structure |
|---|
Probab=95.55 E-value=0.0035 Score=57.08 Aligned_cols=36 Identities=22% Similarity=0.461 Sum_probs=28.5
Q ss_pred eeeeEEEcCCCE--EEEECCCCCcHHHHHHHHhCCCCC
Q 035832 36 NGVSFSLPEKSF--GLIFGRSGSGKTTLLQLLAGLSKP 71 (245)
Q Consensus 36 ~~vsl~i~~Ge~--~~liG~nGsGKSTLl~~l~Gl~~p 71 (245)
+.+.-.+..|.+ +.|.||+|+|||||.++|+.....
T Consensus 39 ~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~ 76 (447)
T 3pvs_A 39 KPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANA 76 (447)
T ss_dssp SHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCC
Confidence 444555566665 889999999999999999987654
|
| >2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3} | Back alignment and structure |
|---|
Probab=95.53 E-value=0.008 Score=51.87 Aligned_cols=25 Identities=28% Similarity=0.328 Sum_probs=22.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 45 KSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 45 Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
+.-+.|.||.|+|||+|+++|+...
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~ 176 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHEL 176 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 6789999999999999999998644
|
| >1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A* | Back alignment and structure |
|---|
Probab=95.52 E-value=0.0067 Score=50.90 Aligned_cols=25 Identities=32% Similarity=0.203 Sum_probs=21.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl 68 (245)
+...+.|.||.|+|||||.+.++..
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~ 87 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEE 87 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHH
Confidence 4456889999999999999999874
|
| >3th5_A RAS-related C3 botulinum toxin substrate 1; rossmann fold, GTPase, GTP binding, protein binding, signali protein; HET: GNP; 2.30A {Homo sapiens} | Back alignment and structure |
|---|
Probab=94.49 E-value=0.0023 Score=51.00 Aligned_cols=22 Identities=27% Similarity=0.277 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.++++|+.|+|||||++.+.+-
T Consensus 32 ki~v~G~~~~GKSsli~~l~~~ 53 (204)
T 3th5_A 32 KCVVVGDGAVGKTCLLISYTTN 53 (204)
Confidence 4889999999999999888753
|
| >1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A* | Back alignment and structure |
|---|
Probab=95.50 E-value=0.0076 Score=50.99 Aligned_cols=25 Identities=36% Similarity=0.477 Sum_probs=22.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 45 KSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 45 Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
+.-+.|.||.|+|||||.+.++..+
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l 74 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLA 74 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHh
Confidence 4568899999999999999998765
|
| >1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.49 E-value=0.0082 Score=52.05 Aligned_cols=27 Identities=30% Similarity=0.348 Sum_probs=23.5
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.+..-+.|.||.|+|||||.+.++...
T Consensus 43 ~~~~~iLL~GppGtGKT~la~ala~~~ 69 (322)
T 1xwi_A 43 TPWRGILLFGPPGTGKSYLAKAVATEA 69 (322)
T ss_dssp CCCSEEEEESSSSSCHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCccHHHHHHHHHHHc
Confidence 455678999999999999999999865
|
| >3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A* | Back alignment and structure |
|---|
Probab=95.45 E-value=0.0078 Score=52.93 Aligned_cols=26 Identities=27% Similarity=0.190 Sum_probs=22.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
..-+++|+|+.|+|||||++.|++.+
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l 103 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHL 103 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHH
Confidence 34589999999999999999998664
|
| >3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0079 Score=52.45 Aligned_cols=35 Identities=29% Similarity=0.307 Sum_probs=26.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEE
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINI 78 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~ 78 (245)
+|..+.|.||.|+|||||.+.++..+......+.+
T Consensus 69 ~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~ 103 (368)
T 3uk6_A 69 AGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAI 103 (368)
T ss_dssp TTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEE
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccc
Confidence 46689999999999999999999876533233333
|
| >3l0i_B RAS-related protein RAB-1A; GEF-GDF-RAB complex, GTP-binding, guanine-nucleotide exchang GDI-displacement factor; 2.85A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.44 E-value=0.0014 Score=52.08 Aligned_cols=24 Identities=38% Similarity=0.405 Sum_probs=20.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
.++|+|+.|+|||||++.+.+-..
T Consensus 35 ki~vvG~~~~GKSsli~~l~~~~~ 58 (199)
T 3l0i_B 35 KLLLIGDSGVGKSCLLLRFADDTY 58 (199)
T ss_dssp EEEEECCTTSCCTTTTTSSBCCCC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 378999999999999999987543
|
| >3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A | Back alignment and structure |
|---|
Probab=95.40 E-value=0.0081 Score=52.69 Aligned_cols=26 Identities=50% Similarity=0.543 Sum_probs=22.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
++..+.|.||+|+||||+.++|+...
T Consensus 50 ~~~~vll~GppGtGKT~la~~ia~~~ 75 (363)
T 3hws_A 50 GKSNILLIGPTGSGKTLLAETLARLL 75 (363)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHT
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHc
Confidence 45568899999999999999999765
|
| >3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A | Back alignment and structure |
|---|
Probab=95.40 E-value=0.0087 Score=51.13 Aligned_cols=26 Identities=23% Similarity=0.187 Sum_probs=21.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
....+.|.||.|+|||+|.+.|+..+
T Consensus 35 ~p~~lLl~GppGtGKT~la~aiA~~l 60 (293)
T 3t15_A 35 VPLILGIWGGKGQGKSFQCELVFRKM 60 (293)
T ss_dssp CCSEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 33567888999999999999998654
|
| >2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A | Back alignment and structure |
|---|
Probab=95.37 E-value=0.0057 Score=53.71 Aligned_cols=23 Identities=22% Similarity=0.385 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|+.|||||||++.|+|..
T Consensus 33 ~I~vvG~~~~GKSSLln~L~g~~ 55 (353)
T 2x2e_A 33 QIAVVGGQSAGKSSVLENFVGRD 55 (353)
T ss_dssp EEEEECBTTSSHHHHHHTTTTSC
T ss_pred eEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999999965
|
| >2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A* | Back alignment and structure |
|---|
Probab=95.37 E-value=0.012 Score=49.08 Aligned_cols=28 Identities=36% Similarity=0.426 Sum_probs=23.7
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCC
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
..+..+.|.||.|+|||+|.+.|+....
T Consensus 27 ~~~~~vll~G~~GtGKt~la~~i~~~~~ 54 (265)
T 2bjv_A 27 PLDKPVLIIGERGTGKELIASRLHYLSS 54 (265)
T ss_dssp TSCSCEEEECCTTSCHHHHHHHHHHTST
T ss_pred CCCCCEEEECCCCCcHHHHHHHHHHhcC
Confidence 3456788999999999999999987654
|
| >2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus} | Back alignment and structure |
|---|
Probab=95.34 E-value=0.0094 Score=52.11 Aligned_cols=25 Identities=28% Similarity=0.356 Sum_probs=22.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 45 KSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 45 Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
+..+.|.||.|+|||||++.++...
T Consensus 45 ~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 45 KFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHH
Confidence 5679999999999999999998654
|
| >3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens} | Back alignment and structure |
|---|
Probab=95.34 E-value=0.01 Score=52.08 Aligned_cols=27 Identities=33% Similarity=0.388 Sum_probs=23.1
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.+..-+.|.||.|+|||||++.++...
T Consensus 115 ~~~~~vLl~GppGtGKT~la~aia~~~ 141 (357)
T 3d8b_A 115 GPPKGILLFGPPGTGKTLIGKCIASQS 141 (357)
T ss_dssp SCCSEEEEESSTTSSHHHHHHHHHHHT
T ss_pred CCCceEEEECCCCCCHHHHHHHHHHHc
Confidence 356679999999999999999998654
|
| >2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A* | Back alignment and structure |
|---|
Probab=95.33 E-value=0.0084 Score=52.38 Aligned_cols=28 Identities=25% Similarity=0.311 Sum_probs=24.6
Q ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhC
Q 035832 40 FSLPEKSFGLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 40 l~i~~Ge~~~liG~nGsGKSTLl~~l~G 67 (245)
--+.+|.++.|.||.|+|||||...++.
T Consensus 118 GGi~~gsviLI~GpPGsGKTtLAlqlA~ 145 (331)
T 2vhj_A 118 GHRYASGMVIVTGKGNSGKTPLVHALGE 145 (331)
T ss_dssp TEEEESEEEEEECSCSSSHHHHHHHHHH
T ss_pred CCCCCCcEEEEEcCCCCCHHHHHHHHHH
Confidence 3577888899999999999999999875
|
| >3gj0_A GTP-binding nuclear protein RAN; G protein, GDP, acetylation, cytoplasm, HOST- virus interaction, nucleotide-binding, nucleus, phosphoprotein; HET: GDP; 1.48A {Homo sapiens} SCOP: c.37.1.8 PDB: 3gj3_A* 3gj5_A* 3gj4_A* 3gj6_A* 3gj7_A* 3gj8_A* 1i2m_A 1a2k_C 1ibr_A* 1k5d_A* 1k5g_A* 1qbk_C* 3a6p_C* 3ch5_A* 4gmx_A* 4gpt_A* 4hat_A* 4hau_A* 4hav_A* 4haw_A* ... | Back alignment and structure |
|---|
Probab=95.30 E-value=0.0045 Score=50.00 Aligned_cols=40 Identities=25% Similarity=0.169 Sum_probs=32.0
Q ss_pred HHHHHHHHhhCCCEEEEeCCCC-----CCCHHHHHHHHHHHHHhh
Q 035832 168 RLALAIQLVQVPDLLILDEPLA-----GLDWKARADVVKLLKHLK 207 (245)
Q Consensus 168 rv~iAral~~~p~llllDEPts-----~LD~~~~~~i~~~l~~l~ 207 (245)
.-.|++.+..+|.+...++|+. .+|+..++++.+.++...
T Consensus 166 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (221)
T 3gj0_A 166 FLWLARKLIGDPNLEFVAMPALAPPEVVMDPALAAQYEHDLEVAQ 210 (221)
T ss_dssp HHHHHHHHHTCTTCCEEECCCBCCCSSCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccccccCCCCCCCCCCcchhhhhhhHHHHhhhh
Confidence 4478888999999888888776 788888888887776654
|
| >3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C | Back alignment and structure |
|---|
Probab=95.30 E-value=0.011 Score=51.11 Aligned_cols=25 Identities=32% Similarity=0.414 Sum_probs=21.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl 68 (245)
+..-+.|.||.|+|||||.+.++..
T Consensus 50 ~~~~vLl~GppGtGKT~la~aia~~ 74 (322)
T 3eie_A 50 PTSGILLYGPPGTGKSYLAKAVATE 74 (322)
T ss_dssp CCCEEEEECSSSSCHHHHHHHHHHH
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHH
Confidence 4456899999999999999999865
|
| >1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1 | Back alignment and structure |
|---|
Probab=95.29 E-value=0.0075 Score=53.12 Aligned_cols=30 Identities=17% Similarity=0.210 Sum_probs=22.8
Q ss_pred CCCChHHHHHHHHHHHH---hh--CCCEEEEeCCC
Q 035832 159 HSLSGGYKRRLALAIQL---VQ--VPDLLILDEPL 188 (245)
Q Consensus 159 ~~LSgGqkqrv~iAral---~~--~p~llllDEPt 188 (245)
..+|+||+||..++++| +. +++++++|||+
T Consensus 295 ~~~sld~~~r~~l~~~l~~l~~~~~~~ililde~~ 329 (365)
T 1lw7_A 295 LRSLGSQKQRQQFQQLLKKLLDKYKVPYIEIESPS 329 (365)
T ss_dssp ------CCSHHHHHHHHHHHHHGGGCCCEEEECSS
T ss_pred CcCCccHHHHHHHHHHHHHHHHHcCCCEEEeCCCC
Confidence 35899999999999999 77 89999999997
|
| >3ec1_A YQEH GTPase; atnos1, atnoa1, trap, PVHL, hydrolase, signaling protein; HET: GDP; 2.36A {Geobacillus stearothermophilus} | Back alignment and structure |
|---|
Probab=95.27 E-value=0.0077 Score=53.39 Aligned_cols=25 Identities=20% Similarity=0.256 Sum_probs=22.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl 68 (245)
++..++++|++|+|||||+|.|.|.
T Consensus 161 ~~~~i~~vG~~nvGKStliN~L~~~ 185 (369)
T 3ec1_A 161 EGGDVYVVGCTNVGKSTFINRIIEE 185 (369)
T ss_dssp TTSCEEEECCTTSSHHHHHHHHHHH
T ss_pred ccCcEEEEcCCCCchHHHHHHHHhh
Confidence 4667899999999999999999986
|
| >1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A* | Back alignment and structure |
|---|
Probab=95.22 E-value=0.01 Score=55.82 Aligned_cols=27 Identities=19% Similarity=0.116 Sum_probs=23.4
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
+.|-++.|.|.+||||||+.+.|+-.+
T Consensus 394 q~~~~I~l~GlsGSGKSTiA~~La~~L 420 (573)
T 1m8p_A 394 TQGFTIFLTGYMNSGKDAIARALQVTL 420 (573)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred ccceEEEeecCCCCCHHHHHHHHHHHh
Confidence 356789999999999999999998754
|
| >1lnz_A SPO0B-associated GTP-binding protein; GTPase, OBG, stringent factor, stress response, sporulation, large G-protein, structural genomics, PSI; HET: G4P; 2.60A {Bacillus subtilis} SCOP: b.117.1.1 c.37.1.8 | Back alignment and structure |
|---|
Probab=95.21 E-value=0.011 Score=51.95 Aligned_cols=33 Identities=21% Similarity=0.213 Sum_probs=25.6
Q ss_pred eeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Q 035832 36 NGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 36 ~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl 68 (245)
..+.++++----++|+|..+||||||++.|++-
T Consensus 149 ~~~~leLk~la~V~lvG~~nvGKSTLln~L~~~ 181 (342)
T 1lnz_A 149 RYIVLELKVLADVGLVGFPSVGKSTLLSVVSSA 181 (342)
T ss_dssp EEEEEEEECCCCEEEESSTTSSHHHHHHHSEEE
T ss_pred hhHhhhhhhcCeeeeeCCCCCCHHHHHHHHHcC
Confidence 345555554445889999999999999999874
|
| >1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A* | Back alignment and structure |
|---|
Probab=95.21 E-value=0.0099 Score=56.38 Aligned_cols=39 Identities=28% Similarity=0.261 Sum_probs=28.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCcc--eEEEcCccC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGLSKPTSG--SINIRGYNN 83 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G--~i~~~g~~~ 83 (245)
+|.++.|+|.+||||||+.+.|+-.+.. .| .+.+++..+
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~-~G~~~v~lDgD~i 91 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVC-HGIPCYTLDGDNI 91 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHH-TTCCEEEESHHHH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHh-cCCeEEEechHHh
Confidence 5678999999999999999999865421 12 455555443
|
| >1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1 | Back alignment and structure |
|---|
Probab=95.20 E-value=0.011 Score=52.32 Aligned_cols=27 Identities=30% Similarity=0.507 Sum_probs=23.7
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhC
Q 035832 41 SLPEKSFGLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 41 ~i~~Ge~~~liG~nGsGKSTLl~~l~G 67 (245)
-+++|+++.|.||.|+|||||...++.
T Consensus 70 Gl~~G~li~I~G~pGsGKTtlal~la~ 96 (366)
T 1xp8_A 70 GIPRGRITEIYGPESGGKTTLALAIVA 96 (366)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHH
T ss_pred CccCCcEEEEEcCCCCChHHHHHHHHH
Confidence 468999999999999999999876653
|
| >3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae} | Back alignment and structure |
|---|
Probab=95.20 E-value=0.0062 Score=46.20 Aligned_cols=38 Identities=5% Similarity=0.200 Sum_probs=28.5
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEec
Q 035832 179 PDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSH 217 (245)
Q Consensus 179 p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tH 217 (245)
..+|++||. ..|++..+..+++.+.+... +..+|++|+
T Consensus 76 ~~~l~lDei-~~l~~~~q~~Ll~~l~~~~~~~~~iI~~tn 114 (143)
T 3co5_A 76 GGVLYVGDI-AQYSRNIQTGITFIIGKAERCRVRVIASCS 114 (143)
T ss_dssp TSEEEEEEC-TTCCHHHHHHHHHHHHHHTTTTCEEEEEEE
T ss_pred CCeEEEeCh-HHCCHHHHHHHHHHHHhCCCCCEEEEEecC
Confidence 467999996 46888888888888877642 456676665
|
| >3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.01 Score=49.22 Aligned_cols=21 Identities=24% Similarity=0.426 Sum_probs=18.9
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~G 67 (245)
..||+|+.||||||+.+.|+-
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~ 30 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKE 30 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred ceeeECCCCCCHHHHHHHHHH
Confidence 579999999999999998864
|
| >2qpt_A EH domain-containing protein-2; protein-nucleotide complex, membrane protein, endocytosis; HET: ANP; 3.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=95.19 E-value=0.0087 Score=55.92 Aligned_cols=24 Identities=29% Similarity=0.466 Sum_probs=22.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Q 035832 46 SFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 46 e~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
-.++|+|..|+|||||++.|.|-.
T Consensus 66 ~~V~vvG~~n~GKSTLIN~Llg~~ 89 (550)
T 2qpt_A 66 PMVLVAGQYSTGKTSFIQYLLEQE 89 (550)
T ss_dssp CEEEEEEBTTSCHHHHHHHHHTSC
T ss_pred cEEEEECCCCCCHHHHHHHHhCCc
Confidence 479999999999999999999864
|
| >2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi} | Back alignment and structure |
|---|
Probab=95.18 E-value=0.012 Score=50.44 Aligned_cols=25 Identities=24% Similarity=0.406 Sum_probs=22.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.|.++.|.||.|+|||||++.++..
T Consensus 30 ~~~~v~i~G~~G~GKT~Ll~~~~~~ 54 (350)
T 2qen_A 30 NYPLTLLLGIRRVGKSSLLRAFLNE 54 (350)
T ss_dssp HCSEEEEECCTTSSHHHHHHHHHHH
T ss_pred cCCeEEEECCCcCCHHHHHHHHHHH
Confidence 4689999999999999999998754
|
| >1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A* | Back alignment and structure |
|---|
Probab=95.15 E-value=0.01 Score=54.96 Aligned_cols=29 Identities=7% Similarity=-0.182 Sum_probs=25.6
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCC
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGLSKP 71 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p 71 (245)
+.|-++.|+|.+||||||+-+.|+..+..
T Consensus 393 ~~~~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 393 KQGFSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred ccceEEEecccCCCCHHHHHHHHHHHHHH
Confidence 57788999999999999999999887653
|
| >1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A* | Back alignment and structure |
|---|
Probab=95.14 E-value=0.014 Score=47.27 Aligned_cols=76 Identities=13% Similarity=0.209 Sum_probs=52.4
Q ss_pred HHHHHHHHHHh--hCCCEEEEeCCCC--CCCHHHHHHHHHHHHHhhcCceEEEEecCh-hHHHhhccEEEEEeCCeEEEe
Q 035832 166 KRRLALAIQLV--QVPDLLILDEPLA--GLDWKARADVVKLLKHLKKELTILVVSHDL-KEMAALVDHSWRMDMGGFLVE 240 (245)
Q Consensus 166 kqrv~iAral~--~~p~llllDEPts--~LD~~~~~~i~~~l~~l~~~~tiii~tHd~-~~~~~~~d~v~~l~~G~i~~~ 240 (245)
+..+.-|+..+ .+.+++||||.+. .++.....+++++|.+..+...||+++.+. +++..+||.|-.|..-+--.+
T Consensus 106 ~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~ap~~l~e~AD~VTem~~vkH~~~ 185 (196)
T 1g5t_A 106 MAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLADTVSELRPVKHAFD 185 (196)
T ss_dssp HHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHCSEEEECCCSCCC--
T ss_pred HHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCCcHHHHHhCcceeeecceeCchh
Confidence 44455566666 5689999999976 344455567888887655567899999864 557789999999986554333
Q ss_pred c
Q 035832 241 Q 241 (245)
Q Consensus 241 ~ 241 (245)
.
T Consensus 186 ~ 186 (196)
T 1g5t_A 186 A 186 (196)
T ss_dssp -
T ss_pred c
Confidence 3
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
E-value |
| 245 | ||||
| d1l2ta_ | 230 | c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jann | 7e-51 | |
| d1v43a3 | 239 | c.37.1.12 (A:7-245) Hypothetical protein PH0022, N | 4e-47 | |
| d2hyda1 | 255 | c.37.1.12 (A:324-578) Putative multidrug export AT | 2e-45 | |
| d1b0ua_ | 258 | c.37.1.12 (A:) ATP-binding subunit of the histidin | 2e-44 | |
| d3b60a1 | 253 | c.37.1.12 (A:329-581) Multidrug resistance ABC tra | 5e-44 | |
| d1g6ha_ | 254 | c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jann | 4e-43 | |
| d3dhwc1 | 240 | c.37.1.12 (C:1-240) Methionine import ATP-binding | 6e-42 | |
| d1mv5a_ | 242 | c.37.1.12 (A:) Multidrug resistance ABC transporte | 1e-41 | |
| d2pmka1 | 241 | c.37.1.12 (A:467-707) Haemolysin B ATP-binding pro | 1e-40 | |
| d1ji0a_ | 240 | c.37.1.12 (A:) Branched chain aminoacid ABC transp | 5e-40 | |
| d1r0wa_ | 281 | c.37.1.12 (A:) Cystic fibrosis transmembrane condu | 1e-38 | |
| d1g2912 | 240 | c.37.1.12 (1:1-240) Maltose transport protein MalK | 3e-38 | |
| d1vpla_ | 238 | c.37.1.12 (A:) Putative ABC transporter TM0544 {Th | 1e-37 | |
| d1jj7a_ | 251 | c.37.1.12 (A:) Peptide transporter Tap1, C-termina | 5e-37 | |
| d1oxxk2 | 242 | c.37.1.12 (K:1-242) Glucose transport protein GlcV | 1e-34 | |
| d1l7vc_ | 231 | c.37.1.12 (C:) ABC transporter involved in vitamin | 1e-34 | |
| d2awna2 | 232 | c.37.1.12 (A:4-235) Maltose transport protein MalK | 2e-34 | |
| d1sgwa_ | 200 | c.37.1.12 (A:) Putative ABC transporter PF0895 {Py | 3e-34 | |
| d3d31a2 | 229 | c.37.1.12 (A:1-229) Sulfate/molybdate ABC transpor | 3e-29 | |
| d2onka1 | 240 | c.37.1.12 (A:1-240) Molybdate/tungstate import ATP | 1e-28 | |
| d1ye8a1 | 178 | c.37.1.11 (A:1-178) Hypothetical kinase-like prote | 1e-15 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 5e-15 | |
| g1f2t.1 | 292 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 0.001 | |
| g1ii8.1 | 369 | c.37.1.12 (A:,B:) Rad50 {Archaeon Pyrococcus furio | 1e-14 | |
| d1w1wa_ | 427 | c.37.1.12 (A:) Smc head domain {Baker's yeast (Sac | 5e-07 | |
| d2i3ba1 | 189 | c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 | 0.003 |
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 230 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 163 bits (415), Expect = 7e-51
Identities = 57/228 (25%), Positives = 105/228 (46%), Gaps = 7/228 (3%)
Query: 18 LEVRDVS--YRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGS 75
+++++V+ Y+ + L V+ ++ E F I G SGSGK+T+L ++ L KPT G
Sbjct: 2 IKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGE 61
Query: 76 INIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEY 135
+ I + ++ + +K+G VFQ L+ V + E
Sbjct: 62 VYIDNIKTNDLDDDELTKIRRDKIGFVFQQF-NLIPLLTALENVELPLIFKYRGAMSGEE 120
Query: 136 LALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKA 195
+ L+ + P+ LSGG ++R+A+A L P +++ D+P LD K
Sbjct: 121 RRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARALANNPPIILADQPTGALDSKT 180
Query: 196 RADVVKLLKHLKKEL--TILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241
+++LLK L +E T++VV+HD+ A + + G + +
Sbjct: 181 GEKIMQLLKKLNEEDGKTVVVVTHDINV-ARFGERIIYLK-DGEVERE 226
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} Length = 239 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Score = 154 bits (390), Expect = 4e-47
Identities = 59/224 (26%), Positives = 110/224 (49%), Gaps = 23/224 (10%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
+++ +++ R +N ++ ++ + F ++ G SG GKTT L+++AGL +PT G I
Sbjct: 7 VKLENLTKRFGNFTA--VNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIY 64
Query: 78 IRGYNNDGEPNNSPEPLPPEKVGIVFQFP---ERYFVADNV-LDEVIFGWPRQSGSIQLK 133
+ P + +VFQ V +N+ I +P+ +++
Sbjct: 65 FGDRDVTYLPPK------DRNISMVFQSYAVWPHMTVYENIAFPLKIKKFPKDEIDKRVR 118
Query: 134 EYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDW 193
L + ++ L++ P LSGG ++R+A+A +V PD+L++DEPL+ LD
Sbjct: 119 WAAEL--------LQIEE-LLNRYPAQLSGGQRQRVAVARAIVVEPDVLLMDEPLSNLDA 169
Query: 194 KARADVVKLLKHLKKEL--TILVVSHDLKEMAALVDHSWRMDMG 235
K R + +K L+++L T + V+HD E + D M+ G
Sbjct: 170 KLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRG 213
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} Length = 255 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Score = 150 bits (380), Expect = 2e-45
Identities = 61/229 (26%), Positives = 109/229 (47%), Gaps = 17/229 (7%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
+++ VS++ + IL ++ S+ + G SG GK+TL+ L+ TSG I
Sbjct: 17 IDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQIL 76
Query: 78 IRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLA 137
I G+N + ++G+V Q +D V + ++ G P + ++ E A
Sbjct: 77 IDGHN----IKDFLTGSLRNQIGLVQQDN--ILFSDTVKENILLGRPTATDE-EVVE--A 127
Query: 138 LNLQRAINWV-----GLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLD 192
+ A +++ G D T + + LSGG K+RL++A + P +LILDE + LD
Sbjct: 128 AKMANAHDFIMNLPQGYD-TEVGERGVKLSGGQKQRLSIARIFLNNPPILILDEATSALD 186
Query: 193 WKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241
++ + + + L L K+ T L+V+H L D ++ G +VE
Sbjct: 187 LESESIIQEALDVLSKDRTTLIVAHRL-STITHADKIVVIE-NGHIVET 233
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} Length = 258 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Score = 147 bits (373), Expect = 2e-44
Identities = 64/228 (28%), Positives = 110/228 (48%), Gaps = 15/228 (6%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
L V D+ R G +V L GVS I G SGSGK+T L+ + L KP+ G+I
Sbjct: 3 LHVIDLHKRYGGHEV--LKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAII 60
Query: 78 IRGYNNDGEPNNSPEPLPPEK---------VGIVFQFPERYFVADNVLDEVIFGWPRQSG 128
+ G N + + + +K + +VFQ + VL+ V+ P Q
Sbjct: 61 VNGQNINLVRDKDGQLKVADKNQLRLLRTRLTMVFQHFNLWSHM-TVLENVMEA-PIQVL 118
Query: 129 SIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPL 188
+ + + + VG+D + K P LSGG ++R+++A L PD+L+ DEP
Sbjct: 119 GLSKHDARER-ALKYLAKVGIDERAQGKYPVHLSGGQQQRVSIARALAMEPDVLLFDEPT 177
Query: 189 AGLDWKARADVVKLLKHLKKE-LTILVVSHDLKEMAALVDHSWRMDMG 235
+ LD + +V+++++ L +E T++VV+H++ + H + G
Sbjct: 178 SALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQG 225
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} Length = 253 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Score = 146 bits (371), Expect = 5e-44
Identities = 62/229 (27%), Positives = 112/229 (48%), Gaps = 16/229 (6%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
LE R+V++ PG +V L ++ +P + GRSGSGK+T+ L+ G I
Sbjct: 14 LEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHIL 73
Query: 78 IRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLA 137
+ G++ + L +V +V Q + D V + + + + Q++E A
Sbjct: 74 MDGHDLR---EYTLASLR-NQVALVSQNV--HLFNDTVANNIAYARTEEYSREQIEE--A 125
Query: 138 LNLQRAINWV-----GLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLD 192
+ A++++ GLD T + ++ LSGG ++R+A+A L++ +LILDE + LD
Sbjct: 126 ARMAYAMDFINKMDNGLD-TIIGENGVLLSGGQRQRIAIARALLRDSPILILDEATSALD 184
Query: 193 WKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241
++ + L L+K T LV++H L D ++ G +VE+
Sbjct: 185 TESERAIQAALDELQKNRTSLVIAHRL-STIEQADEIVVVE-DGIIVER 231
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 254 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Score = 144 bits (365), Expect = 4e-43
Identities = 50/225 (22%), Positives = 94/225 (41%), Gaps = 10/225 (4%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
L ++ + L+GVS S+ + LI G +GSGK+TL+ ++ G K G +
Sbjct: 5 LRTENIVKYFGEFKA--LDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVY 62
Query: 78 IRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLK---- 133
+ + + Q + V +N+L I S+ K
Sbjct: 63 FENKDITNKEPAELYHYGIVRTFQTPQPLKEMTVLENLLIGEICPGESPLNSLFYKKWIP 122
Query: 134 --EYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGL 191
E + + + ++ L D+ LSGG + + + L+ P ++++DEP+AG+
Sbjct: 123 KEEEMVEKAFKILEFLKLSH-LYDRKAGELSGGQMKLVEIGRALMTNPKMIVMDEPIAGV 181
Query: 192 DWKARADVVKLLKHLKKE-LTILVVSHDLKEMAALVDHSWRMDMG 235
D+ + LK + +T L++ H L + +DH + M G
Sbjct: 182 APGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNG 226
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Score = 140 bits (355), Expect = 6e-42
Identities = 60/233 (25%), Positives = 109/233 (46%), Gaps = 21/233 (9%)
Query: 18 LEVRDVS--YRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGS 75
+++ +++ + + LN VS +P + G SG+GK+TL++ + L +PT GS
Sbjct: 2 IKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGS 61
Query: 76 INIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIF-----GWPRQSGSI 130
+ + G + ++G++FQ + V V P+
Sbjct: 62 VLVDGQELTTLSESELTKA-RRQIGMIFQHF-NLLSSRTVFGNVALPLELDNTPKDEVKR 119
Query: 131 QLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAG 190
++ E L+L VGL D P +LSGG K+R+A+A L P +L+ DE +
Sbjct: 120 RVTELLSL--------VGLGD-KHDSYPSNLSGGQKQRVAIARALASNPKVLLCDEATSA 170
Query: 191 LDWKARADVVKLLKHLKKE--LTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241
LD +++LLK + + LTIL+++H++ + + D + G L+EQ
Sbjct: 171 LDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVIS-NGELIEQ 222
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Score = 140 bits (354), Expect = 1e-41
Identities = 63/226 (27%), Positives = 99/226 (43%), Gaps = 11/226 (4%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
L R V + ++ IL +SF S G SG GK+T+ LL +PT+G I
Sbjct: 2 LSARHVDFAYDDSE-QILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEIT 60
Query: 78 IRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYL- 136
I G D N S E ++G V Q + +A + + + +G L + L
Sbjct: 61 IDGQPID---NISLENWR-SQIGFVSQ--DSAIMAGTIRENLTYGLEGDYTDEDLWQVLD 114
Query: 137 -ALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKA 195
A N T + + +SGG ++RLA+A ++ P +L+LDE A LD ++
Sbjct: 115 LAFARSFVENMPDQLNTEVGERGVKISGGQRQRLAIARAFLRNPKILMLDEATASLDSES 174
Query: 196 RADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241
+ V K L L K T LV++H L D + ++ G +
Sbjct: 175 ESMVQKALDSLMKGRTTLVIAHRL-STIVDADKIYFIEKGQ-ITGS 218
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} Length = 241 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Score = 137 bits (347), Expect = 1e-40
Identities = 56/224 (25%), Positives = 104/224 (46%), Gaps = 9/224 (4%)
Query: 19 EVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINI 78
R++ +R IL+ ++ S+ + I GRSGSGK+TL +L+ P +G + I
Sbjct: 3 TFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLI 62
Query: 79 RGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLAL 138
G++ N +VG+V Q + +++D + P S +
Sbjct: 63 DGHDLALADPNWL----RRQVGVVLQDN--VLLNRSIIDNISLANPGMSVEKVIYAAKLA 116
Query: 139 NLQRAINWVGL-DGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARA 197
I+ + T + + LSGG ++R+A+A LV P +LI DE + LD+++
Sbjct: 117 GAHDFISELREGYNTIVGEQGAGLSGGQRQRIAIARALVNNPKILIFDEATSALDYESEH 176
Query: 198 DVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241
+++ + + K T+++++H L D M+ G +VEQ
Sbjct: 177 VIMRNMHKICKGRTVIIIAHRL-STVKNADRIIVME-KGKIVEQ 218
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Score = 136 bits (343), Expect = 5e-40
Identities = 48/219 (21%), Positives = 94/219 (42%), Gaps = 11/219 (5%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
LEV+ + + G+ +P + G +G+GKTT L +AGL + G I
Sbjct: 7 LEVQSLHVYYGAIHA--IKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKII 64
Query: 78 IRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLA 137
G + +P + + V + V +N++ ++ L+ +
Sbjct: 65 FNGQDITNKPAHVINRMGIALVPEGRRIFPELTVYENLMMGAYNRKDKEGIKRDLEWIFS 124
Query: 138 LNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARA 197
L + L L + +LSGG ++ LA+ L+ P LL++DEP GL +
Sbjct: 125 L-------FPRLKE-RLKQLGGTLSGGEQQMLAIGRALMSRPKLLMMDEPSLGLAPILVS 176
Query: 198 DVVKLLKHLKKE-LTILVVSHDLKEMAALVDHSWRMDMG 235
+V ++++ + +E TIL+V + + + + ++ G
Sbjct: 177 EVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETG 215
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 281 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Score = 133 bits (336), Expect = 1e-38
Identities = 46/209 (22%), Positives = 80/209 (38%), Gaps = 22/209 (10%)
Query: 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEP 93
+L ++ ++ + I G +GSGKT+LL L+ G + + G I G
Sbjct: 51 VLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG------------- 97
Query: 94 LPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTS 153
+V QF + + + + +IFG + Q + D T
Sbjct: 98 ----RVSFCSQFS--WIMPGTIKENIIFGVSYDEYRYKSVVKACQLQQDITKFAEQDNTV 151
Query: 154 LDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVK-LLKHLKKELTI 212
L + +LSGG + R++LA + + DL +LD P LD V + + L T
Sbjct: 152 LGEGGVTLSGGQRARISLARAVYKDADLYLLDSPFGYLDVFTEEQVFESCVCKLMANKTR 211
Query: 213 LVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241
++V+ + E D + G
Sbjct: 212 ILVTSKM-EHLRKADKILILH-QGSSYFY 238
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Score = 131 bits (331), Expect = 3e-38
Identities = 62/226 (27%), Positives = 104/226 (46%), Gaps = 17/226 (7%)
Query: 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGS 75
+ + + DV + +S + + F ++ G SG GKTT L+++AGL +P+ G
Sbjct: 2 AGVRLVDVWKVFGEVTA--VREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQ 59
Query: 76 INIRGYNNDGEPNNSPEPLPPEKVGIVFQ----FPERYFVADNVLDEVIFGWPRQSGSIQ 131
I I P + +VFQ +P + + PRQ +
Sbjct: 60 IYIGDKLVADPEKGIFVPPKDRDIAMVFQSYALYPHMTVYDNIAFPLKLRKVPRQEIDQR 119
Query: 132 LKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGL 191
++E L +GL L++ P LSGG ++R+AL +V+ P + ++DEPL+ L
Sbjct: 120 VREVAEL--------LGLTE-LLNRKPRELSGGQRQRVALGRAIVRKPQVFLMDEPLSNL 170
Query: 192 DWKARADVVKLLKHLKKEL--TILVVSHDLKEMAALVDHSWRMDMG 235
D K R + LK L+++L T + V+HD E + D M+ G
Sbjct: 171 DAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRG 216
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} Length = 238 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Score = 129 bits (326), Expect = 1e-37
Identities = 64/219 (29%), Positives = 105/219 (47%), Gaps = 13/219 (5%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
+ V+D+ R ++ L G+SF + E + G +G+GKTT L++++ L KP+SG +
Sbjct: 3 VVVKDLRKRIGKKEI--LKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVT 60
Query: 78 IRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLA 137
+ G N EP+ + + + + Y + S S +++E
Sbjct: 61 VFGKNVVEEPHEV-----RKLISYLPEEAGAYRNMQGIEYLRFVAGFYASSSSEIEEM-- 113
Query: 138 LNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARA 197
++RA GL + + S G R+L +A L+ P L ILDEP +GLD
Sbjct: 114 --VERATEIAGLGE-KIKDRVSTYSKGMVRKLLIARALMVNPRLAILDEPTSGLDVLNAR 170
Query: 198 DVVKLLKHLKKE-LTILVVSHDLKEMAALVDHSWRMDMG 235
+V K+LK +E LTILV SH++ E+ L D + G
Sbjct: 171 EVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNG 209
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} Length = 251 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Score = 128 bits (323), Expect = 5e-37
Identities = 55/229 (24%), Positives = 107/229 (46%), Gaps = 13/229 (5%)
Query: 18 LEVRDVSYR-PPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSI 76
++ +DVS+ P V +L G++F+L + G +GSGK+T+ LL L +PT G +
Sbjct: 12 VQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQL 71
Query: 77 NIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGW-PRQSGSIQLKEY 135
+ G + +V V Q P+ + ++ + + +G + +
Sbjct: 72 LLDGKPLPQYEHRYLH----RQVAAVGQEPQVF--GRSLQENIAYGLTQKPTMEEITAAA 125
Query: 136 LALNLQRAINWV-GLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWK 194
+ I+ + T +D+ LSGG ++ +ALA L++ P +LILD+ + LD
Sbjct: 126 VKSGAHSFISGLPQGYDTEVDEAGSQLSGGQRQAVALARALIRKPCVLILDDATSALDAN 185
Query: 195 ARADVVKLLKHLKKEL--TILVVSHDLKEMAALVDHSWRMDMGGFLVEQ 241
++ V +LL + ++L+++ L + DH ++ GG + E
Sbjct: 186 SQLQVEQLLYESPERYSRSVLLITQHL-SLVEQADHILFLE-GGAIREG 232
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} Length = 242 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Score = 122 bits (307), Expect = 1e-34
Identities = 60/220 (27%), Positives = 104/220 (47%), Gaps = 8/220 (3%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
+ V++VS +V L+ V+ ++ I G SG+GKTT ++++AGL P++G +
Sbjct: 4 IIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELY 63
Query: 78 IRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLA 137
P K+G+VFQ Y + + ++++
Sbjct: 64 FDDRLVASNGKLIVPPE-DRKIGMVFQTWALYPNLTAFENIAFPLTNMKMSKEEIRKR-- 120
Query: 138 LNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARA 197
++ + + L+ P LSG ++R+ALA LV+ P LL+LDEP + LD + R
Sbjct: 121 --VEEVAKILDIHH-VLNHFPRELSGAQQQRVALARALVKDPSLLLLDEPFSNLDARMRD 177
Query: 198 DVVKLLKHLKKEL--TILVVSHDLKEMAALVDHSWRMDMG 235
L+K ++ L T+LVVSHD ++ A+ D + G
Sbjct: 178 SARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKG 217
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} Length = 231 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Score = 121 bits (305), Expect = 1e-34
Identities = 51/226 (22%), Positives = 92/226 (40%), Gaps = 29/226 (12%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
++++DV+ L +S + + G +G+GK+TLL +AG+ GSI
Sbjct: 4 MQLQDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGM-TSGKGSIQ 56
Query: 78 IRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLA 137
G+P + + A V + ++ + L +
Sbjct: 57 F-----AGQPLEAWSATKLALHRAYLSQQQTPPFATPVWHYLTLHQHDKTRTELLND--- 108
Query: 138 LNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQV-------PDLLILDEPLAG 190
+ LD L + + LSGG +R+ LA ++Q+ LL+LDEP+
Sbjct: 109 -----VAGALALD-DKLGRSTNQLSGGEWQRVRLAAVVLQITPQANPAGQLLLLDEPMNS 162
Query: 191 LDWKARADVVKLLKHLKKE-LTILVVSHDLKEMAALVDHSWRMDMG 235
LD ++ + K+L L ++ L I++ SHDL +W + G
Sbjct: 163 LDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGG 208
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} Length = 232 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Score = 121 bits (305), Expect = 2e-34
Identities = 60/219 (27%), Positives = 100/219 (45%), Gaps = 15/219 (6%)
Query: 19 EVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINI 78
++++V+ V ++ + E F + G SG GK+TLL+++AGL TSG + I
Sbjct: 2 QLQNVTKAWGEVVV--SKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFI 59
Query: 79 RGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLAL 138
+ PP + G+ F + E + + +G KE +
Sbjct: 60 GEKRMND--------TPPAERGVGMVFQSYALYPHLSVAENMSFGLKLAG--AKKEVINQ 109
Query: 139 NLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARAD 198
+ + + L LD+ P +LSGG ++R+A+ LV P + +LDEPL+ LD R
Sbjct: 110 RVNQVAEVLQLAH-LLDRKPKALSGGQRQRVAIGRTLVAEPSVFLLDEPLSNLDAALRVQ 168
Query: 199 VVKLLKHLKKEL--TILVVSHDLKEMAALVDHSWRMDMG 235
+ + L K L T++ V+HD E L D +D G
Sbjct: 169 MRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAG 207
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} Length = 200 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Score = 120 bits (301), Expect = 3e-34
Identities = 46/219 (21%), Positives = 87/219 (39%), Gaps = 26/219 (11%)
Query: 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGS 75
S LE+RD+S +L ++ ++ + + G +G GKTTLL+ ++ KP G
Sbjct: 1 SKLEIRDLSVGYDKP---VLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGE 57
Query: 76 INIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEY 135
I G K+ + + +V D + + E
Sbjct: 58 IIYNGVPITKVKG---------KIFFLPEEIIVPRKI-SVEDYLKAVASLYGVKVNKNE- 106
Query: 136 LALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKA 195
+ A+ V + K LS G RR+ LA L+ ++ +LD+P+ +D +
Sbjct: 107 ----IMDALESVEVLDL--KKKLGELSQGTIRRVQLASTLLVNAEIYVLDDPVVAIDEDS 160
Query: 196 RADVVKLLKHLKKE--LTILVVSHDLKEMAALVDHSWRM 232
+ V+K + + KE + I+ +L + D + +
Sbjct: 161 KHKVLKSILEILKEKGIVIISSREEL----SYCDVNENL 195
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} Length = 229 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Score = 107 bits (269), Expect = 3e-29
Identities = 60/220 (27%), Positives = 103/220 (46%), Gaps = 19/220 (8%)
Query: 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSIN 77
+E+ +S + +D +S + + +I G +G+GKT L+L+AG P SG I
Sbjct: 2 IEIESLSRKWKNFSLD---NLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRIL 58
Query: 78 IRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLA 137
+ G + L PEK I F + + + + R K
Sbjct: 59 LDGKDVTD--------LSPEKHDIAFVYQNYSLFPHMNVKKNLEFGMRMKKIKDPKR--- 107
Query: 138 LNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARA 197
+ + ++ LD++P +LSGG ++R+ALA LV P +L+LDEPL+ LD + +
Sbjct: 108 --VLDTARDLKIEHL-LDRNPLTLSGGEQQRVALARALVTNPKILLLDEPLSALDPRTQE 164
Query: 198 DVVKLLKHLKKE--LTILVVSHDLKEMAALVDHSWRMDMG 235
+ ++L L K+ LT+L ++HD E + D + G
Sbjct: 165 NAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDG 204
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} Length = 240 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Score = 106 bits (265), Expect = 1e-28
Identities = 64/201 (31%), Positives = 100/201 (49%), Gaps = 18/201 (8%)
Query: 38 VSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97
V F + L+ G +G+GK+ L+L+AG+ KP G + + G + PLPPE
Sbjct: 18 VDFEMGRDYCVLL-GPTGAGKSVFLELIAGIVKPDRGEVRLNGADIT--------PLPPE 68
Query: 98 KVGIVFQFPER-YFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDK 156
+ GI F + F +V + +G ++ + + L LD+
Sbjct: 69 RRGIGFVPQDYALFPHLSVYRNIAYGLRNVERVE--RDRRVREMAEKLGIAHL----LDR 122
Query: 157 DPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKEL--TILV 214
P LSGG ++R+ALA LV P LL+LDEPL+ +D K + +++ L+ +++E IL
Sbjct: 123 KPARLSGGERQRVALARALVIQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILH 182
Query: 215 VSHDLKEMAALVDHSWRMDMG 235
V+HDL E A L D M G
Sbjct: 183 VTHDLIEAAMLADEVAVMLNG 203
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} Length = 178 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Score = 70.8 bits (172), Expect = 1e-15
Identities = 17/187 (9%), Positives = 42/187 (22%), Gaps = 35/187 (18%)
Query: 49 LIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPER 108
+I G G GKTTL++ + + +
Sbjct: 4 IITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPETKKR------------------- 44
Query: 109 YFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRR 168
G+ + + K + + ++
Sbjct: 45 ------------TGFRIITTEGKKKIFSSKFFTSKKLVGSYG---VNVQYFEELAIPILE 89
Query: 169 LALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDH 228
A ++I+DE + + + + ++ ++ LV
Sbjct: 90 RAYREAKKDRRKVIIIDEIGKMELFSKKFRDLVRQIMHDPNVNVVATIPIR-DVHPLVKE 148
Query: 229 SWRMDMG 235
R+
Sbjct: 149 IRRLPGA 155
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 427 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 47.8 bits (112), Expect = 5e-07
Identities = 20/75 (26%), Positives = 27/75 (36%), Gaps = 6/75 (8%)
Query: 159 HSLSGGYKRRLAL----AIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELT-IL 213
LSGG K AL AI Q +LDE A LD + ++ + +
Sbjct: 331 EYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFI 390
Query: 214 VVSHDLKEMAALVDH 228
V+S M D
Sbjct: 391 VISLK-NTMFEKSDA 404
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} Length = 189 | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Score = 35.4 bits (80), Expect = 0.003
Identities = 24/175 (13%), Positives = 51/175 (29%), Gaps = 15/175 (8%)
Query: 49 LIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPER 108
+ G G GKTTL+ + + K + ++ E V +
Sbjct: 5 FLTGPPGVGKTTLIHKASEVLKSSGVPVDGFYT----EEVRQGGRRIGFDVVTLSGTRGP 60
Query: 109 YFVADNVLDEVIFGWPRQSGSIQLK----EYLALNLQRAINWVGLDGTSLDKDPHSLSGG 164
+ L+ + G + E LAL + R + G + G
Sbjct: 61 L--SRVGLEPPPGKRECRVGQYVVDLTSFEQLALPVLRNADCSSGPGQ---RVCVIDEIG 115
Query: 165 YKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLK--KELTILVVSH 217
+ L + G + + L++ ++ K++ + V+
Sbjct: 116 KMELFSQLFIQAVRQTLSTPGTIILGTIPVPKGKPLALVEEIRNRKDVKVFNVTK 170
|
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 245 | |||
| d1l2ta_ | 230 | MJ0796 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d1v43a3 | 239 | Hypothetical protein PH0022, N-terminal domain {Py | 100.0 | |
| d1oxxk2 | 242 | Glucose transport protein GlcV, N-terminal domain | 100.0 | |
| d1g2912 | 240 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d2awna2 | 232 | Maltose transport protein MalK, N-terminal domain | 100.0 | |
| d3dhwc1 | 240 | Methionine import ATP-binding protein MetN {Escher | 100.0 | |
| d3d31a2 | 229 | Sulfate/molybdate ABC transporter, ATP-binding pro | 100.0 | |
| d1b0ua_ | 258 | ATP-binding subunit of the histidine permease {Sal | 100.0 | |
| d1ji0a_ | 240 | Branched chain aminoacid ABC transporter {Thermoto | 100.0 | |
| d1g6ha_ | 254 | MJ1267 {Archaeon Methanococcus jannaschii [TaxId: | 100.0 | |
| d2onka1 | 240 | Molybdate/tungstate import ATP-binding protein Wtp | 100.0 | |
| d1vpla_ | 238 | Putative ABC transporter TM0544 {Thermotoga mariti | 100.0 | |
| d2pmka1 | 241 | Haemolysin B ATP-binding protein {Escherichia coli | 100.0 | |
| d1mv5a_ | 242 | Multidrug resistance ABC transporter LmrA, C-termi | 100.0 | |
| d1jj7a_ | 251 | Peptide transporter Tap1, C-terminal ABC domain {H | 100.0 | |
| d3b60a1 | 253 | Multidrug resistance ABC transporter MsbA, C-termi | 100.0 | |
| d2hyda1 | 255 | Putative multidrug export ATP-binding/permease pro | 100.0 | |
| d1l7vc_ | 231 | ABC transporter involved in vitamin B12 uptake, Bt | 100.0 | |
| d1r0wa_ | 281 | Cystic fibrosis transmembrane conductance regulato | 100.0 | |
| d1sgwa_ | 200 | Putative ABC transporter PF0895 {Pyrococcus furios | 100.0 | |
| g1f2t.1 | 292 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.93 | |
| d1ye8a1 | 178 | Hypothetical kinase-like protein Aq_1292 {Aquifex | 99.79 | |
| d1e69a_ | 308 | Smc head domain {Thermotoga maritima [TaxId: 2336] | 99.53 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 99.52 | |
| g1xew.1 | 329 | Smc head domain {Pyrococcus furiosus [TaxId: 2261] | 99.3 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 99.23 | |
| d1ewqa2 | 224 | DNA repair protein MutS, the C-terminal domain {Th | 98.58 | |
| d1wb9a2 | 234 | DNA repair protein MutS, the C-terminal domain {Es | 98.51 | |
| g1ii8.1 | 369 | Rad50 {Archaeon Pyrococcus furiosus [TaxId: 2261]} | 98.27 | |
| d1qhla_ | 222 | Cell division protein MukB {Escherichia coli [TaxI | 98.17 | |
| d1znwa1 | 182 | Guanylate kinase {Mycobacterium tuberculosis [TaxI | 97.91 | |
| d1u0la2 | 225 | Probable GTPase EngC (YjeQ), C-terminal domain {Th | 97.9 | |
| d1np6a_ | 170 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.89 | |
| d1cr2a_ | 277 | Gene 4 protein (g4p, DNA primase), helicase domain | 97.88 | |
| d1zp6a1 | 176 | Hypothetical protein Atu3015 {Agrobacterium tumefa | 97.83 | |
| d2i3ba1 | 189 | Cancer-related NTPase, C1orf57 {Human (Homo sapien | 97.77 | |
| d1knqa_ | 171 | Gluconate kinase {Escherichia coli [TaxId: 562]} | 97.77 | |
| d1m8pa3 | 183 | ATP sulfurylase C-terminal domain {Fungus (Penicil | 97.75 | |
| d1t9ha2 | 231 | Probable GTPase EngC (YjeQ), C-terminal domain {Ba | 97.71 | |
| d1w1wa_ | 427 | Smc head domain {Baker's yeast (Saccharomyces cere | 97.71 | |
| d1xjca_ | 165 | Molybdopterin-guanine dinucleotide biosynthesis pr | 97.66 | |
| d1s96a_ | 205 | Guanylate kinase {Escherichia coli [TaxId: 562]} | 97.64 | |
| d1lw7a2 | 192 | Transcriptional regulator NadR, ribosylnicotinamid | 97.62 | |
| d1qhxa_ | 178 | Chloramphenicol phosphotransferase {Streptomyces v | 97.6 | |
| d1y63a_ | 174 | Probable kinase LmjF30.1890 {Leishmania major [Tax | 97.56 | |
| d1kaga_ | 169 | Shikimate kinase (AroK) {Escherichia coli [TaxId: | 97.54 | |
| d1ly1a_ | 152 | Polynucleotide kinase, kinase domain {Bacteriophag | 97.54 | |
| d1nlfa_ | 274 | Hexameric replicative helicase repA {Escherichia c | 97.54 | |
| d1rz3a_ | 198 | Hypothetical protein rbstp0775 {Bacillus stearothe | 97.53 | |
| d1khta_ | 190 | Adenylate kinase {Archaeon Methanococcus voltae [T | 97.51 | |
| d1x6va3 | 195 | Adenosine-5'phosphosulfate kinase (APS kinase) {Hu | 97.5 | |
| d1j8yf2 | 211 | GTPase domain of the signal sequence recognition p | 97.48 | |
| d1rkba_ | 173 | Adenylate kinase {Human (Homo sapiens), isoenzyme | 97.47 | |
| d2bdta1 | 176 | Hypothetical protein BH3686 {Bacillus halodurans [ | 97.46 | |
| d2qy9a2 | 211 | GTPase domain of the signal recognition particle r | 97.44 | |
| d1yj5a2 | 172 | 5' polynucleotide kinase-3' phosphatase, C-termina | 97.43 | |
| d1svia_ | 195 | Probable GTPase EngB {Bacillus subtilis [TaxId: 14 | 97.35 | |
| d1gkya_ | 186 | Guanylate kinase {Baker's yeast (Saccharomyces cer | 97.33 | |
| d1uj2a_ | 213 | Uridine-cytidine kinase 2 {Human (Homo sapiens) [T | 97.31 | |
| d1yrba1 | 244 | ATP(GTP)-binding protein PAB0955 {Pyrococcus abyss | 97.29 | |
| d1mkya2 | 186 | Probable GTPase Der, N-terminal and middle domains | 97.29 | |
| d1kgda_ | 178 | Guanylate kinase-like domain of Cask {Human (Homo | 97.28 | |
| d1qf9a_ | 194 | UMP/CMP kinase {Dictyostelium discoideum [TaxId: 4 | 97.25 | |
| d1mkya1 | 171 | Probable GTPase Der, N-terminal and middle domains | 97.25 | |
| d1lvga_ | 190 | Guanylate kinase {Mouse (Mus musculus) [TaxId: 100 | 97.24 | |
| d2cxxa1 | 184 | GTP-binding protein engB {Pyrococcus horikoshii [T | 97.23 | |
| d1lnza2 | 185 | Obg GTP-binding protein middle domain {Bacillus su | 97.23 | |
| d1egaa1 | 179 | GTPase Era, N-terminal domain {Escherichia coli [T | 97.21 | |
| d1f6ba_ | 186 | SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: | 97.2 | |
| d1n0wa_ | 242 | DNA repair protein Rad51, catalytic domain {Human | 97.2 | |
| d1wf3a1 | 178 | GTPase Era, N-terminal domain {Thermus thermophilu | 97.19 | |
| d1viaa_ | 161 | Shikimate kinase (AroK) {Campylobacter jejuni [Tax | 97.18 | |
| d3adka_ | 194 | Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | 97.17 | |
| d1udxa2 | 180 | Obg GTP-binding protein middle domain {Thermus the | 97.15 | |
| d1e6ca_ | 170 | Shikimate kinase (AroK) {Erwinia chrysanthemi [Tax | 97.15 | |
| d1ukza_ | 196 | Uridylate kinase {Baker's yeast (Saccharomyces cer | 97.15 | |
| d1g6oa_ | 323 | Hexameric traffic ATPase, HP0525 {Helicobacter pyl | 97.12 | |
| d2qtvb1 | 166 | SAR1 {Baker's yeast (Saccharomyces cerevisiae) [Ta | 97.12 | |
| d1nksa_ | 194 | Adenylate kinase {Archaeon Sulfolobus acidocaldari | 97.1 | |
| d1nrjb_ | 209 | Signal recognition particle receptor beta-subunit | 97.09 | |
| d1r8sa_ | 160 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 97.07 | |
| d1upta_ | 169 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 97.06 | |
| d1ls1a2 | 207 | GTPase domain of the signal sequence recognition p | 97.05 | |
| d1zaka1 | 189 | Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | 97.04 | |
| d2iyva1 | 165 | Shikimate kinase (AroK) {Mycobacterium tuberculosi | 97.03 | |
| d1teva_ | 194 | UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606] | 97.03 | |
| d1bifa1 | 213 | 6-phosphofructo-2-kinase/fructose-2,6-bisphosphata | 96.99 | |
| d1zina1 | 182 | Adenylate kinase {Bacillus stearothermophilus [Tax | 96.99 | |
| d2gj8a1 | 161 | Probable tRNA modification GTPase TrmE (MnmE), G d | 96.99 | |
| d1ak2a1 | 190 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.98 | |
| d1uf9a_ | 191 | Dephospho-CoA kinase {Thermus thermophilus [TaxId: | 96.96 | |
| d1ksha_ | 165 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 96.95 | |
| d1puia_ | 188 | Probable GTPase EngB {Escherichia coli [TaxId: 562 | 96.94 | |
| d1gvnb_ | 273 | Plasmid maintenance system epsilon/zeta, toxin zet | 96.93 | |
| d1okkd2 | 207 | GTPase domain of the signal recognition particle r | 96.93 | |
| d1ckea_ | 225 | CMP kinase {Escherichia coli [TaxId: 562]} | 96.91 | |
| d1q3ta_ | 223 | CMP kinase {Streptococcus pneumoniae [TaxId: 1313] | 96.9 | |
| d2vp4a1 | 197 | Deoxyribonucleoside kinase {Fruit fly (Drosophila | 96.88 | |
| d1m7ga_ | 208 | Adenosine-5'phosphosulfate kinase (APS kinase) {Fu | 96.88 | |
| d1s3ga1 | 182 | Adenylate kinase {Bacillus globisporus [TaxId: 145 | 96.87 | |
| d4tmka_ | 210 | Thymidylate kinase {Escherichia coli [TaxId: 562]} | 96.82 | |
| d1h65a_ | 257 | Chloroplast protein translocon GTPase Toc34 {Garde | 96.81 | |
| d1nn5a_ | 209 | Thymidylate kinase {Human (Homo sapiens) [TaxId: 9 | 96.8 | |
| d1e4va1 | 179 | Adenylate kinase {Escherichia coli [TaxId: 562]} | 96.76 | |
| d2cdna1 | 181 | Adenylate kinase {Mycobacterium tuberculosis [TaxI | 96.76 | |
| d1zj6a1 | 177 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.75 | |
| d1jjva_ | 205 | Dephospho-CoA kinase {Haemophilus influenzae [TaxI | 96.74 | |
| d1xzpa2 | 160 | TrmE GTPase domain {Thermotoga maritima [TaxId: 23 | 96.73 | |
| d1iqpa2 | 231 | Replication factor C {Archaeon Pyrococcus furiosus | 96.73 | |
| d1sq5a_ | 308 | Pantothenate kinase PanK {Escherichia coli [TaxId: | 96.73 | |
| d1sxja2 | 253 | Replication factor C1 {Baker's yeast (Saccharomyce | 96.72 | |
| d1vmaa2 | 213 | GTPase domain of the signal recognition particle r | 96.72 | |
| d1szpa2 | 251 | DNA repair protein Rad51, catalytic domain {Baker' | 96.72 | |
| d1wb1a4 | 179 | Elongation factor SelB, N-terminal domain {Methano | 96.7 | |
| d1p5zb_ | 241 | Deoxycytidine kinase {Human (Homo sapiens) [TaxId: | 96.7 | |
| d2fh5b1 | 207 | Signal recognition particle receptor beta-subunit | 96.67 | |
| d1tmka_ | 214 | Thymidylate kinase {Baker's yeast (Saccharomyces c | 96.61 | |
| d1sxjd2 | 237 | Replication factor C2 {Baker's yeast (Saccharomyce | 96.61 | |
| d1zd9a1 | 164 | ADP-ribosylation factor {Human (Homo sapiens), ARL | 96.61 | |
| d1akya1 | 180 | Adenylate kinase {Baker's yeast (Saccharomyces cer | 96.6 | |
| d2ak3a1 | 189 | Adenylate kinase {Cow (Bos taurus), mitochondrial | 96.58 | |
| d1fzqa_ | 176 | ADP-ribosylation factor {Mouse (Mus musculus), ARL | 96.55 | |
| d2erxa1 | 171 | di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 96.53 | |
| d2fnaa2 | 283 | Archaeal ATPase SSO1545 {Sulfolobus solfataricus [ | 96.52 | |
| d1htwa_ | 158 | Hypothetical protein HI0065 {Haemophilus influenza | 96.51 | |
| d1tq4a_ | 400 | Interferon-inducible GTPase {Mouse (Mus musculus) | 96.51 | |
| d1ky3a_ | 175 | Rab-related protein ypt7p {Baker's yeast (Saccharo | 96.49 | |
| d1in4a2 | 238 | Holliday junction helicase RuvB {Thermotoga mariti | 96.49 | |
| d2p67a1 | 327 | LAO/AO transport system kinase ArgK {Escherichia c | 96.49 | |
| d1tf7a1 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.48 | |
| d1vhta_ | 208 | Dephospho-CoA kinase {Escherichia coli [TaxId: 562 | 96.48 | |
| d1a7ja_ | 288 | Phosphoribulokinase {Rhodobacter sphaeroides [TaxI | 96.46 | |
| d1tf7a2 | 242 | Circadian clock protein KaiC {Synechococcus sp. st | 96.43 | |
| d3raba_ | 169 | Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | 96.42 | |
| d1pzna2 | 254 | DNA repair protein Rad51, catalytic domain {Archae | 96.41 | |
| d1v5wa_ | 258 | Meiotic recombination protein DMC1/LIM15 homolog { | 96.4 | |
| d2i1qa2 | 258 | DNA repair protein Rad51, catalytic domain {Archae | 96.38 | |
| d1ctqa_ | 166 | cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9 | 96.37 | |
| d1ofha_ | 309 | HslU {Haemophilus influenzae [TaxId: 727]} | 96.33 | |
| d2f9la1 | 175 | Rab11b {Human (Homo sapiens) [TaxId: 9606]} | 96.33 | |
| d1ixsb2 | 239 | Holliday junction helicase RuvB {Thermus thermophi | 96.3 | |
| d2f7sa1 | 186 | Rab27b {Human (Homo sapiens) [TaxId: 9606]} | 96.29 | |
| d1z2aa1 | 164 | Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | 96.27 | |
| d1gsia_ | 208 | Thymidylate kinase {Mycobacterium tuberculosis [Ta | 96.24 | |
| d2gjsa1 | 168 | Rad {Human (Homo sapiens) [TaxId: 9606]} | 96.24 | |
| d1moza_ | 182 | ADP-ribosylation factor {Baker's yeast (Saccharomy | 96.24 | |
| d1lv7a_ | 256 | AAA domain of cell division protein FtsH {Escheric | 96.24 | |
| d1g7sa4 | 227 | Initiation factor IF2/eIF5b, N-terminal (G) domain | 96.22 | |
| d1kkma_ | 176 | HPr kinase HprK C-terminal domain {Lactobacillus c | 96.21 | |
| d1fnna2 | 276 | CDC6, N-domain {Archaeon Pyrobaculum aerophilum [T | 96.19 | |
| d2g3ya1 | 172 | GTP-binding protein GEM {Human (Homo sapiens) [Tax | 96.19 | |
| d1g16a_ | 166 | Rab-related protein Sec4 {Baker's yeast (Saccharom | 96.19 | |
| d1sxjb2 | 224 | Replication factor C4 {Baker's yeast (Saccharomyce | 96.18 | |
| d1xtqa1 | 167 | GTP-binding protein RheB {Human (Homo sapiens) [Ta | 96.17 | |
| d2a5ja1 | 173 | Rab2b {Human (Homo sapiens) [TaxId: 9606]} | 96.14 | |
| d2erya1 | 171 | r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | 96.14 | |
| d1knxa2 | 177 | HPr kinase HprK C-terminal domain {Mycoplasma pneu | 96.13 | |
| d1wmsa_ | 174 | Rab9a {Human (Homo sapiens) [TaxId: 9606]} | 96.11 | |
| d1odfa_ | 286 | Hypothetical protein Ygr205W {Baker's yeast (Sacch | 96.1 | |
| d1d2na_ | 246 | Hexamerization domain of N-ethylmalemide-sensitive | 96.09 | |
| d2ew1a1 | 171 | Rab30 {Human (Homo sapiens) [TaxId: 9606]} | 96.08 | |
| d1vg8a_ | 184 | Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | 96.07 | |
| d1sxje2 | 252 | Replication factor C5 {Baker's yeast (Saccharomyce | 96.04 | |
| d1kaoa_ | 167 | Rap2a {Human (Homo sapiens) [TaxId: 9606]} | 96.03 | |
| d1z06a1 | 165 | Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | 96.02 | |
| d1sxjc2 | 227 | Replication factor C3 {Baker's yeast (Saccharomyce | 96.02 | |
| d1z0ja1 | 167 | Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | 96.01 | |
| d1e0sa_ | 173 | ADP-ribosylation factor {Human (Homo sapiens), ARF | 96.0 | |
| d2atva1 | 168 | Ras-like estrogen-regulated growth inhibitor, RERG | 95.99 | |
| d2qm8a1 | 323 | Metallochaperone MeaB {Methylobacterium extorquens | 95.99 | |
| d1z0fa1 | 166 | Rab14 {Human (Homo sapiens) [TaxId: 9606]} | 95.94 | |
| d1yzqa1 | 164 | Rab6 {Human (Homo sapiens) [TaxId: 9606]} | 95.94 | |
| d1kmqa_ | 177 | RhoA {Human (Homo sapiens) [TaxId: 9606]} | 95.91 | |
| d1r7ra3 | 265 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.9 | |
| d1z08a1 | 167 | Rab21 {Human (Homo sapiens) [TaxId: 9606]} | 95.89 | |
| d1x3sa1 | 177 | Rab18 {Human (Homo sapiens) [TaxId: 9606]} | 95.88 | |
| d1xpua3 | 289 | Transcription termination factor Rho, ATPase domai | 95.88 | |
| d1ixza_ | 247 | AAA domain of cell division protein FtsH {Thermus | 95.84 | |
| d1i2ma_ | 170 | Ran {Human (Homo sapiens) [TaxId: 9606]} | 95.81 | |
| d2bcgy1 | 194 | GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisi | 95.78 | |
| d2fn4a1 | 173 | r-Ras {Human (Homo sapiens) [TaxId: 9606]} | 95.76 | |
| d2bmea1 | 174 | Rab4a {Human (Homo sapiens) [TaxId: 9606]} | 95.74 | |
| d1ek0a_ | 170 | Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [T | 95.74 | |
| d1mh1a_ | 183 | Rac {Human (Homo sapiens) [TaxId: 9606]} | 95.73 | |
| d1w5sa2 | 287 | CDC6-like protein APE0152, N-terminal domain {Aero | 95.72 | |
| d2fu5c1 | 173 | Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | 95.71 | |
| d1g8pa_ | 333 | ATPase subunit of magnesium chelatase, BchI {Rhodo | 95.69 | |
| d1e32a2 | 258 | Membrane fusion ATPase VCP/p97 {Mouse (Mus musculu | 95.66 | |
| d1r2qa_ | 170 | Rab5a {Human (Homo sapiens) [TaxId: 9606]} | 95.65 | |
| d1svsa1 | 195 | Transducin (alpha subunit) {Rat (Rattus norvegicus | 95.65 | |
| d1x1ra1 | 169 | Ras-related protein M-Ras (XRas) {Mouse (Mus muscu | 95.65 | |
| d1zcba2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 95.6 | |
| d1f5na2 | 277 | Interferon-induced guanylate-binding protein 1 (GB | 95.59 | |
| d1g41a_ | 443 | HslU {Haemophilus influenzae [TaxId: 727]} | 95.58 | |
| d1p9ra_ | 401 | Extracellular secretion NTPase EpsE {Vibrio choler | 95.54 | |
| d1kk1a3 | 195 | Initiation factor eIF2 gamma subunit, N-terminal ( | 95.54 | |
| d1c1ya_ | 167 | Rap1A {Human (Homo sapiens) [TaxId: 9606]} | 95.5 | |
| d1deka_ | 241 | Deoxynucleoside monophosphate kinase {Bacteriophag | 95.5 | |
| d2g6ba1 | 170 | Rab26 {Human (Homo sapiens) [TaxId: 9606]} | 95.49 | |
| d1ko7a2 | 169 | HPr kinase HprK C-terminal domain {Staphylococcus | 95.48 | |
| d1u8za_ | 168 | Ras-related protein RalA {Cotton-top tamarin (Sagu | 95.48 | |
| d2bmja1 | 175 | Centaurin gamma 1, G domain {Human (Homo sapiens) | 95.46 | |
| d2atxa1 | 185 | RhoQ {Human (Homo sapiens) [TaxId: 9606]} | 95.46 | |
| d1azta2 | 221 | Transducin (alpha subunit) {Cow (Bos taurus) [TaxI | 95.44 | |
| d1u94a1 | 263 | RecA protein, ATPase-domain {Escherichia coli [Tax | 95.43 | |
| d1m7ba_ | 179 | RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | 95.32 | |
| d1wxqa1 | 319 | GTP-binding protein PH0525 {Pyrococcus horikoshii | 95.17 | |
| d2ocpa1 | 241 | Deoxyguanosine kinase {Human (Homo sapiens) [TaxId | 95.17 | |
| d2ngra_ | 191 | CDC42 {Human (Homo sapiens) [TaxId: 9606]} | 95.15 | |
| d2akab1 | 299 | Dynamin G domain {Rat (Rattus norvegicus) [TaxId: | 95.1 | |
| d1r6bx3 | 315 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 95.03 | |
| d1jwyb_ | 306 | Dynamin G domain {Dictyostelium discoideum [TaxId: | 94.94 | |
| d1mo6a1 | 269 | RecA protein, ATPase-domain {Mycobacterium tubercu | 94.94 | |
| d1ni3a1 | 296 | YchF GTP-binding protein N-terminal domain {Fissio | 94.9 | |
| d2bcjq2 | 200 | Transducin (alpha subunit) {Mouse (Mus musculus) [ | 94.61 | |
| d1svma_ | 362 | Papillomavirus large T antigen helicase domain {Si | 94.52 | |
| d1xp8a1 | 268 | RecA protein, ATPase-domain {Deinococcus radiodura | 94.52 | |
| d2jdid3 | 276 | Central domain of beta subunit of F1 ATP synthase | 94.5 | |
| d1nija1 | 222 | Hypothetical protein YjiA, N-terminal domain {Esch | 94.48 | |
| d2dy1a2 | 267 | Elongation factor G (EF-G), N-terminal (G) domain | 94.42 | |
| d2qn6a3 | 205 | Initiation factor eIF2 gamma subunit, N-terminal ( | 94.36 | |
| d1l8qa2 | 213 | Chromosomal replication initiation factor DnaA {Aq | 94.35 | |
| d2c78a3 | 204 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 94.25 | |
| d1njfa_ | 239 | delta prime subunit of DNA polymerase III, N-domai | 94.22 | |
| d1a5ta2 | 207 | delta prime subunit of DNA polymerase III, N-domai | 94.05 | |
| d2bv3a2 | 276 | Elongation factor G (EF-G), N-terminal (G) domain | 93.96 | |
| d1jala1 | 278 | YchF GTP-binding protein N-terminal domain {Haemop | 93.89 | |
| d2a5yb3 | 277 | CED-4, NB-ARC domain {Caenorhabditis elegans [TaxI | 93.72 | |
| d1e9ra_ | 433 | Bacterial conjugative coupling protein TrwB {Esche | 93.71 | |
| d1fx0a3 | 276 | Central domain of alpha subunit of F1 ATP synthase | 93.39 | |
| d1jbka_ | 195 | ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | 93.17 | |
| d1r6bx2 | 268 | ClpA, an Hsp100 chaperone, AAA+ modules {Escherich | 93.17 | |
| d1qvra3 | 315 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 93.13 | |
| d1p6xa_ | 333 | Thymidine kinase {Equine herpesvirus type 4 [TaxId | 93.01 | |
| d1um8a_ | 364 | ClpX {Helicobacter pylori [TaxId: 210]} | 92.92 | |
| d2olra1 | 313 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 92.86 | |
| d1w44a_ | 321 | NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | 92.81 | |
| d1j3ba1 | 318 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 92.68 | |
| d1d2ea3 | 196 | Elongation factor Tu (EF-Tu), N-terminal (G) domai | 92.48 | |
| d2jdia3 | 285 | Central domain of alpha subunit of F1 ATP synthase | 92.33 | |
| d1e2ka_ | 329 | Thymidine kinase {Herpes simplex virus type 1, dif | 92.17 | |
| d1osna_ | 331 | Thymidine kinase {Varicella-zoster virus [TaxId: 1 | 92.09 | |
| d1ii2a1 | 323 | Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxalo | 91.84 | |
| d1u0ja_ | 267 | Rep 40 protein helicase domain {Adeno-associated v | 91.74 | |
| d1yksa1 | 140 | YFV helicase domain {Yellow fever virus [TaxId: 11 | 91.61 | |
| d1jnya3 | 224 | Elongation factor eEF-1alpha, N-terminal (G) domai | 91.56 | |
| d2bmfa2 | 305 | Dengue virus helicase {Dengue virus type 2 [TaxId: | 90.36 | |
| d2b8ta1 | 139 | Thymidine kinase, TK1, N-terminal domain {Ureaplas | 90.33 | |
| d1zunb3 | 222 | Sulfate adenylate transferase subunit cysN/C, EF-T | 90.24 | |
| d1pjra1 | 318 | DEXX box DNA helicase {Bacillus stearothermophilus | 90.23 | |
| d1uaaa1 | 306 | DEXX box DNA helicase {Escherichia coli, RepD [Tax | 90.07 | |
| d1a1va1 | 136 | HCV helicase domain {Human hepatitis C virus (HCV) | 90.07 | |
| d2gnoa2 | 198 | gamma subunit of DNA polymerase III, N-domain {The | 89.74 | |
| d1g8fa3 | 122 | ATP sulfurylase C-terminal domain {Baker's yeast ( | 89.47 | |
| d1w36d1 | 359 | Exodeoxyribonuclease V alpha chain (RecD) {Escheri | 89.47 | |
| d1puja_ | 273 | Probable GTPase YlqF {Bacillus subtilis [TaxId: 14 | 89.04 | |
| d1n0ua2 | 341 | Elongation factor 2 (eEF-2), N-terminal (G) domain | 88.82 | |
| d1qvra2 | 387 | ClpB, AAA+ modules {Thermus thermophilus [TaxId: 2 | 88.62 | |
| d1r5ba3 | 245 | Eukaryotic peptide chain release factor ERF2, G do | 88.49 | |
| d1f60a3 | 239 | Elongation factor eEF-1alpha, N-terminal (G) domai | 88.1 | |
| d1ny5a2 | 247 | Transcriptional activator sigm54 (NtrC1), C-termin | 88.03 | |
| d1lkxa_ | 684 | Myosin S1, motor domain {Dictyostelium discoideum, | 87.78 | |
| d1d0xa2 | 712 | Myosin S1, motor domain {Dictyostelium discoideum | 87.67 | |
| d1xbta1 | 133 | Thymidine kinase, TK1, N-terminal domain {Human (H | 87.07 | |
| d1br2a2 | 710 | Myosin S1, motor domain {Chicken (Gallus gallus), | 86.81 | |
| d1tuea_ | 205 | Replication protein E1 helicase domain {Human papi | 86.29 | |
| d2mysa2 | 794 | Myosin S1, motor domain {Chicken (Gallus gallus), | 85.4 | |
| d1gkub1 | 237 | Helicase-like "domain" of reverse gyrase {Archaeon | 84.31 | |
| d1kk8a2 | 789 | Myosin S1, motor domain {Bay scallop (Aequipecten | 84.01 | |
| d1w7ja2 | 730 | Myosin S1, motor domain {Chicken (Gallus gallus), | 83.91 | |
| d2p6ra3 | 202 | Hel308 helicase {Archaeoglobus fulgidus [TaxId: 22 | 83.34 | |
| d1g5ta_ | 157 | ATP:corrinoid adenosyltransferase CobA {Salmonella | 81.6 | |
| d1xx6a1 | 141 | Thymidine kinase, TK1, N-terminal domain {Clostrid | 81.45 |
| >d1l2ta_ c.37.1.12 (A:) MJ0796 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ0796 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=5.9e-69 Score=451.22 Aligned_cols=225 Identities=24% Similarity=0.383 Sum_probs=191.1
Q ss_pred eEEEEeEEEECCCCc--cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQ--VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~--~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
||+++||+|+|+.+. ..+|+||||+|++||+++|+||||||||||+++|+|+++|++|+|+++|+++...+.......
T Consensus 1 mI~i~nlsk~y~~~~~~~~al~~isl~i~~Ge~~~iiG~sGsGKSTLl~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~ 80 (230)
T d1l2ta_ 1 MIKLKNVTKTYKMGEEIIYALKNVNLNIKEGEFVSIMGPSGSGKSTMLNIIGCLDKPTEGEVYIDNIKTNDLDDDELTKI 80 (230)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHHHHHHH
T ss_pred CEEEEeEEEEeCCCCeeEEEEeceEEEEcCCCEEEEECCCCCCcchhhHhccCCCCCCcceeEECCEEcCcCChhhcchh
Confidence 689999999996432 348999999999999999999999999999999999999999999999999876443221122
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
++++||||||++. +++.+||+||+.++............+..+++.++++.++|.+..++++|++|||||||||+||||
T Consensus 81 r~~~ig~v~Q~~~-l~~~~tv~eni~~~~~~~~~~~~~~~~~~~~~~~~l~~~~L~~~~~~~~p~~LSGGqkQRvaIAra 159 (230)
T d1l2ta_ 81 RRDKIGFVFQQFN-LIPLLTALENVELPLIFKYRGAMSGEERRKRALECLKMAELEERFANHKPNQLSGGQQQRVAIARA 159 (230)
T ss_dssp HHHHEEEECTTCC-CCTTSCHHHHHHHHHHTCCSSCCCHHHHHHHHHHHHHHTTCCGGGTTCCGGGSCHHHHHHHHHHHH
T ss_pred hcceEEEEecchh-hCcCccHHHHHhHHHHHhccCCCCHHHHHHHHHHHHHhhchhhhhhcCChhhCCHHHHHHHHHHhh
Confidence 2457999999985 788999999999863221111112344556788999999998644799999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-c-CceEEEEecChhHHHhhccEEEEEeCCeEEEeccC
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLK-K-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQRI 243 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~~ 243 (245)
|+++|++|||||||++||+.++++++++|+++. + ++|||+||||++++ ++|||+++|++|+|+.++.+
T Consensus 160 L~~~P~lLllDEPTs~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a-~~~drv~~m~~G~Iv~~g~~ 229 (230)
T d1l2ta_ 160 LANNPPIILADQPTGALDSKTGEKIMQLLKKLNEEDGKTVVVVTHDINVA-RFGERIIYLKDGEVEREEKL 229 (230)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEEECSCHHHH-TTSSEEEEEETTEEEEEEEC
T ss_pred hhcCCCEEEecCCccccCHHHHHHHHHHHHHHHHhhCCEEEEECCCHHHH-HhCCEEEEEECCEEEEeccC
Confidence 999999999999999999999999999999985 3 58999999999976 79999999999999988754
|
| >d1v43a3 c.37.1.12 (A:7-245) Hypothetical protein PH0022, N-terminal domain {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Hypothetical protein PH0022, N-terminal domain species: Pyrococcus horikoshii [TaxId: 53953]
Probab=100.00 E-value=7.3e-68 Score=446.31 Aligned_cols=215 Identities=27% Similarity=0.427 Sum_probs=187.2
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
++.|+++||+|+|++ +.+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...+.
T Consensus 4 M~~I~v~nlsk~yg~--~~al~~vsl~v~~Ge~~~liGpsGaGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~------ 75 (239)
T d1v43a3 4 MVEVKLENLTKRFGN--FTAVNKLNLTIKDGEFLVLLGPSGCGKTTTLRMIAGLEEPTEGRIYFGDRDVTYLPP------ 75 (239)
T ss_dssp CCCEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCG------
T ss_pred cCeEEEEEEEEEECC--EEEEcceeEEECCCCEEEEECCCCChHHHHHHHHHcCCCCCCCEEEEcceecccCCc------
Confidence 345999999999974 679999999999999999999999999999999999999999999999999865432
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
.+++||||||++. +|+.+||+||+.++..... ..+.+.++++.++++.++|++. .+++|++|||||||||+||||
T Consensus 76 ~~r~ig~v~Q~~~-l~~~ltv~enl~~~~~~~~---~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSGGq~QRvaiAra 150 (239)
T d1v43a3 76 KDRNISMVFQSYA-VWPHMTVYENIAFPLKIKK---FPKDEIDKRVRWAAELLQIEEL-LNRYPAQLSGGQRQRVAVARA 150 (239)
T ss_dssp GGGTEEEEEC-------CCCHHHHHHTTCC--C---CCHHHHHHHHHHHHHHTTCGGG-TTSCTTTCCSSCHHHHHHHHH
T ss_pred ccceEEEEeechh-hcccchHHHHHHHHHHHcC---CCHHHHHHHHHHHHHHcCChhh-hcCChhhCCHHHHHHHHHHhh
Confidence 2467999999984 7889999999998743221 1244566789999999999985 799999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-c-CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLK-K-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
|+.+|++|||||||+||||.++.+++++|++++ + ++|||+||||++++..+|||+++|++|+++.++.
T Consensus 151 L~~~P~iLllDEPts~LD~~~~~~i~~ll~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~ 220 (239)
T d1v43a3 151 IVVEPDVLLMDEPLSNLDAKLRVAMRAEIKKLQQKLKVTTIYVTHDQVEAMTMGDRIAVMNRGQLLQIGS 220 (239)
T ss_dssp HTTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred hccCCCceeecCCcccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 999999999999999999999999999999985 3 6999999999999999999999999999998764
|
| >d1oxxk2 c.37.1.12 (K:1-242) Glucose transport protein GlcV, N-terminal domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Glucose transport protein GlcV, N-terminal domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=100.00 E-value=2.7e-68 Score=449.34 Aligned_cols=221 Identities=28% Similarity=0.400 Sum_probs=194.6
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
..|+++||+|+|+++...+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...+... ...+
T Consensus 2 ~~i~v~nlsk~y~~g~~~aL~~vsl~i~~Ge~~~iiG~sGsGKSTll~~i~gl~~p~~G~I~~~g~~i~~~~~~~-~~~~ 80 (242)
T d1oxxk2 2 VRIIVKNVSKVFKKGKVVALDNVNINIENGERFGILGPSGAGKTTFMRIIAGLDVPSTGELYFDDRLVASNGKLI-VPPE 80 (242)
T ss_dssp CCEEEEEEEEEEGGGTEEEEEEEEEEECTTCEEEEECSCHHHHHHHHHHHHTSSCCSEEEEEETTEEEEETTEES-SCGG
T ss_pred CEEEEEeEEEEECCCCEEEEeceEEEECCCCEEEEECCCCCcHHHHHHHHHcCcCCCCceEEECCEEeecCchhh-cchh
Confidence 359999999999654567999999999999999999999999999999999999999999999999986543221 1223
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
+++||||||++. +|+.+||+||+.++.... . ..+.+.++++.++++.+||++. .+++|++|||||||||+|||||
T Consensus 81 rr~ig~vfQ~~~-L~p~ltv~eni~~~l~~~-~--~~~~~~~~~v~~~l~~~gL~~~-~~~~p~~LSGGqkQRvaiARaL 155 (242)
T d1oxxk2 81 DRKIGMVFQTWA-LYPNLTAFENIAFPLTNM-K--MSKEEIRKRVEEVAKILDIHHV-LNHFPRELSGAQQQRVALARAL 155 (242)
T ss_dssp GSCEEEEETTSC-CCTTSCHHHHHHGGGTTS-S--CCHHHHHHHHHHHHHHTTCGGG-TTSCGGGSCHHHHHHHHHHHHH
T ss_pred hccceEEecccc-ccccccHHHHhhhhhHhh-c--CCHHHHHHHHHHHHhhcChHhh-hhCChhhCCHHHHhHHHHHhHH
Confidence 567999999984 788899999999984322 1 1244566789999999999875 7999999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-c-CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLK-K-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
+++|++|||||||+|||+.++.+++++|+++. + +.|||+||||++++.++|||+++|++|+++.++.
T Consensus 156 ~~~P~llllDEPt~~LD~~~~~~i~~~i~~l~~~~g~tvi~vTHd~~~~~~~~dri~vm~~G~iv~~g~ 224 (242)
T d1oxxk2 156 VKDPSLLLLDEPFSNLDARMRDSARALVKEVQSRLGVTLLVVSHDPADIFAIADRVGVLVKGKLVQVGK 224 (242)
T ss_dssp TTCCSEEEEESTTTTSCGGGHHHHHHHHHHHHHHHCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred hhcccceeecCCccCCCHHHHHHHHHHHHHHHhccCCEEEEEECCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 99999999999999999999999999999985 3 6999999999999999999999999999998764
|
| >d1g2912 c.37.1.12 (1:1-240) Maltose transport protein MalK, N-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Archaeon Thermococcus litoralis [TaxId: 2265]
Probab=100.00 E-value=7.9e-68 Score=446.65 Aligned_cols=220 Identities=27% Similarity=0.403 Sum_probs=193.3
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
+.|+++||+|+|++ .++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...........+
T Consensus 2 ~~i~v~nl~k~yg~--~~al~~vsl~i~~Ge~~~liG~sGaGKSTll~~i~gl~~p~sG~I~~~g~~i~~~~~~~~~~~~ 79 (240)
T d1g2912 2 AGVRLVDVWKVFGE--VTAVREMSLEVKDGEFMILLGPSGCGKTTTLRMIAGLEEPSRGQIYIGDKLVADPEKGIFVPPK 79 (240)
T ss_dssp EEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHHTSSCCSEEEEEETTEEEEEGGGTEECCGG
T ss_pred CcEEEEeEEEEECC--EEEEcceeeEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEEecccchhhhcccc
Confidence 46999999999964 5799999999999999999999999999999999999999999999999988653322222233
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
+++||||||++. +|+.+||+||+.++..... ....+.++++.++++.+++++. .+++|++|||||||||+|||||
T Consensus 80 ~r~ig~v~Q~~~-L~~~ltV~eni~~~~~~~~---~~~~e~~~~v~~~l~~~~l~~~-~~~~p~~LSGGqkQRv~IAraL 154 (240)
T d1g2912 80 DRDIAMVFQSYA-LYPHMTVYDNIAFPLKLRK---VPRQEIDQRVREVAELLGLTEL-LNRKPRELSGGQRQRVALGRAI 154 (240)
T ss_dssp GSSEEEECSCCC-CCTTSCHHHHHHHHHHHTT---CCHHHHHHHHHHHHHHHTCGGG-TTCCGGGSCHHHHHHHHHHHHH
T ss_pred cccceecccchh-hcchhhhhHhhhhhHHHcC---CCHHHHHHHHHHHHHHcCChhH-hcCChhhCCHHHHHHHHHHHHH
Confidence 578999999984 7889999999998732211 1234556789999999999985 7999999999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-c-CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLK-K-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
+++|++|||||||+|||+.++..++++|+++. + +.|||+||||++++..+||||++|++|+++..+.
T Consensus 155 ~~~P~iLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHd~~~~~~~~drv~vm~~G~iv~~G~ 223 (240)
T d1g2912 155 VRKPQVFLMDEPLSNLDAKLRVRMRAELKKLQRQLGVTTIYVTHDQVEAMTMGDRIAVMNRGVLQQVGS 223 (240)
T ss_dssp HTCCSEEEEECTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEEESCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred hcCCCEEEecCCCcccCHHHHHHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 99999999999999999999999999999985 3 7999999999999999999999999999998764
|
| >d2awna2 c.37.1.12 (A:4-235) Maltose transport protein MalK, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Maltose transport protein MalK, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.6e-67 Score=442.65 Aligned_cols=212 Identities=29% Similarity=0.446 Sum_probs=155.2
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++||+|+|++ ..+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...+. .++
T Consensus 1 Iev~nv~k~yg~--~~~l~~isl~i~~Gei~~liGpsGsGKSTLl~~i~Gl~~p~sG~I~i~g~~i~~~~~------~~r 72 (232)
T d2awna2 1 VQLQNVTKAWGE--VVVSKDINLDIHEGEFVVFVGPSGCGKSTLLRMIAGLETITSGDLFIGEKRMNDTPP------AER 72 (232)
T ss_dssp EEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEESSSCCTTSCG------GGT
T ss_pred CEEEEEEEEECC--EEEEeeeEEEEcCCCEEEEECCCCChHHHHHHHHhcCCCCCCCEEEECCEECCCCch------hhc
Confidence 689999999964 579999999999999999999999999999999999999999999999999864331 246
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ 177 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~ 177 (245)
+||||||++. +++.+||+||+.++..... ..+++.++++.++++.++|.+. .+++|++|||||||||+|||||++
T Consensus 73 ~ig~v~Q~~~-l~~~~tv~eni~~~~~~~~---~~~~~~~~~v~~~l~~~~l~~~-~~~~~~~LSGGqkQRvaiAraL~~ 147 (232)
T d2awna2 73 GVGMVFQSYA-LYPHLSVAENMSFGLKLAG---AKKEVINQRVNQVAEVLQLAHL-LDRKPKALSGGQRQRVAIGRTLVA 147 (232)
T ss_dssp CEEEECSSCC-C------------------------CHHHHHHHHHHHHC----------------------CHHHHHHT
T ss_pred eeeeeccccc-cccchhHHHHHHHHHHHcC---CCHHHHHHHHHHHHHhCCChhh-hhCChhhCCHHHHHHHHHHHHHhc
Confidence 7999999984 7889999999999743211 1233456678999999999985 799999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-c-CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 178 VPDLLILDEPLAGLDWKARADVVKLLKHLK-K-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~~~~i~~~l~~l~-~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
+|++|||||||+||||.++.+++++|+++. + ++|||++|||++++..+|||+++|++|+++..+.
T Consensus 148 ~P~illlDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vTHd~~~a~~~~dri~vm~~G~iv~~G~ 214 (232)
T d2awna2 148 EPSVFLLDEPLSNLDAALRVQMRIEISRLHKRLGRTMIYVTHDQVEAMTLADKIVVLDAGRVAQVGK 214 (232)
T ss_dssp CCSEEEEESTTTTSCHHHHHHHHHHHHHHHHHSCCEEEEEESCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred CCCEEEEcCCCCCCCHHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEeC
Confidence 999999999999999999999999999985 3 6999999999999999999999999999998764
|
| >d3dhwc1 c.37.1.12 (C:1-240) Methionine import ATP-binding protein MetN {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Methionine import ATP-binding protein MetN species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1.8e-67 Score=444.48 Aligned_cols=221 Identities=24% Similarity=0.420 Sum_probs=191.8
Q ss_pred eEEEEeEEEECCCCc--cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQ--VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~--~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
||+++||+|+|+.+. ..||+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+......
T Consensus 1 mi~v~nlsk~y~~~~~~~~al~~vsl~i~~Ge~~~iiG~sGsGKSTLl~~i~Gl~~p~sG~I~~~g~~i~~~~~~~~~~- 79 (240)
T d3dhwc1 1 MIKLSNITKVFHQGTRTIQALNNVSLHVPAGQIYGVIGASGAGKSTLIRCVNLLERPTEGSVLVDGQELTTLSESELTK- 79 (240)
T ss_dssp CEEEEEEEEEEECSSCEEEEEEEEEEEECSSCEEEEEESTTSSHHHHHHHHTTSSCCSEEEEEETTEEECTTCHHHHHH-
T ss_pred CEEEEeEEEEeCCCCeeEEEeeceeEEEcCCCEEEEECCCCCCHHHHHHHHcCCccccCCceEEcCeEeeeCChhhhhh-
Confidence 689999999996532 35899999999999999999999999999999999999999999999999986543221111
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQ 174 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAra 174 (245)
.|++||||||++. +++.+||+||+.++...... .+++.++++.++++.+||++. .+++|++|||||||||+||||
T Consensus 80 ~rr~ig~VfQ~~~-l~~~~tv~eni~~~l~~~~~---~~~~~~~~v~~~L~~vgL~~~-~~~~~~~LSGG~~QRvaiAra 154 (240)
T d3dhwc1 80 ARRQIGMIFQHFN-LLSSRTVFGNVALPLELDNT---PKDEVKRRVTELLSLVGLGDK-HDSYPSNLSGGQKQRVAIARA 154 (240)
T ss_dssp HHHHEEECCSSCC-CCTTSBHHHHHHHHHHTTTC---CTTHHHHHHHHHHHHHSTTTT-TSSCBSCCCHHHHHHHHHHHH
T ss_pred hhccccccccccc-cCCCccHHHHHHHHHHHcCC---CHHHHHHHHHHHHHHcCCchh-hhCChhhCCHHHHHHHHHhhh
Confidence 2357999999984 78899999999987322111 123445678999999999986 799999999999999999999
Q ss_pred HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-c-CceEEEEecChhHHHhhccEEEEEeCCeEEEeccC
Q 035832 175 LVQVPDLLILDEPLAGLDWKARADVVKLLKHLK-K-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQRI 243 (245)
Q Consensus 175 l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~~ 243 (245)
|+.+|++|||||||+|||+.++.+++++|++++ + ++|||+||||++++..+|||+++|++|+++.++.+
T Consensus 155 L~~~P~lLllDEPt~~LD~~~~~~i~~~l~~l~~~~g~tvi~vTHdl~~~~~~~dri~vl~~G~iv~~G~~ 225 (240)
T d3dhwc1 155 LASNPKVLLCDEATSALDPATTRSILELLKDINRRLGLTILLITHEMDVVKRICDCVAVISNGELIEQDTV 225 (240)
T ss_dssp HHTCCSEEEEESGGGSSCHHHHHHHHHHHHHHHHHHCCEEEEEBSCHHHHHHHCSEEEEEETTEEEEEEET
T ss_pred hccCCCeEEeccccccCCHHHhhHHHHHHHHHHhccCCEEEEEcCCHHHHHHhCCEEEEEECCEEEEECCH
Confidence 999999999999999999999999999999985 3 69999999999999999999999999999987653
|
| >d3d31a2 c.37.1.12 (A:1-229) Sulfate/molybdate ABC transporter, ATP-binding protein {Methanosarcina acetivorans [TaxId: 2214]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Sulfate/molybdate ABC transporter, ATP-binding protein species: Methanosarcina acetivorans [TaxId: 2214]
Probab=100.00 E-value=7.7e-67 Score=437.46 Aligned_cols=209 Identities=28% Similarity=0.426 Sum_probs=186.0
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
||+++||+|+|++ .+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++...+. .+
T Consensus 1 mi~v~nlsk~y~~---~aL~~vs~~i~~Ge~~~liGpsGaGKSTll~~l~Gl~~p~sG~I~~~G~~i~~~~~------~~ 71 (229)
T d3d31a2 1 MIEIESLSRKWKN---FSLDNLSLKVESGEYFVILGPTGAGKTLFLELIAGFHVPDSGRILLDGKDVTDLSP------EK 71 (229)
T ss_dssp CEEEEEEEEECSS---CEEEEEEEEECTTCEEEEECCCTHHHHHHHHHHHTSSCCSEEEEEETTEECTTSCH------HH
T ss_pred CEEEEEEEEEeCC---EEEeeeEEEECCCCEEEEECCCCCcHHHHHHHHhcCcCCCCCEEEEccEeccccch------hH
Confidence 6899999999963 48999999999999999999999999999999999999999999999999864321 24
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
++||||||++. +|+.+||+||+.++...... ...+++.++++.+++.+. +++++.+|||||||||+|||||+
T Consensus 72 r~ig~v~Q~~~-l~~~~tV~enl~~~~~~~~~------~~~~~~~~~l~~~~l~~~-~~~~~~~LSGG~~QRvaiAraL~ 143 (229)
T d3d31a2 72 HDIAFVYQNYS-LFPHMNVKKNLEFGMRMKKI------KDPKRVLDTARDLKIEHL-LDRNPLTLSGGEQQRVALARALV 143 (229)
T ss_dssp HTCEEECTTCC-CCTTSCHHHHHHHHHHHHCC------CCHHHHHHHHHHTTCTTT-TTSCGGGSCHHHHHHHHHHHHTT
T ss_pred hcceeeccccc-cCccccHHHHHHHHHhhccc------cHHHHHHHHHHHhcchhh-HhCChhhCCHHHhcchhhhhhhh
Confidence 67999999984 78899999999987321111 112467888999999986 79999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh-c-CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLK-K-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~-~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
++|++|||||||+||||.++.+++++|+++. + +.|||++|||++++..+|||+++|++|+++..+.
T Consensus 144 ~~P~iLllDEPts~LD~~~~~~i~~~l~~l~~~~g~tii~vtHd~~~~~~~~drv~vm~~G~iv~~g~ 211 (229)
T d3d31a2 144 TNPKILLLDEPLSALDPRTQENAREMLSVLHKKNKLTVLHITHDQTEARIMADRIAVVMDGKLIQVGK 211 (229)
T ss_dssp SCCSEEEEESSSTTSCHHHHHHHHHHHHHHHHHTTCEEEEEESCHHHHHHHCSEEEEESSSCEEEEEC
T ss_pred ccCCceeecCCCcCCCHHHHHHHHHHHHHHHhcCCcEEEEEcCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 9999999999999999999999999999985 4 6899999999999999999999999999998764
|
| >d1b0ua_ c.37.1.12 (A:) ATP-binding subunit of the histidine permease {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ATP-binding subunit of the histidine permease species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=8.3e-65 Score=433.63 Aligned_cols=221 Identities=29% Similarity=0.390 Sum_probs=190.4
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCC----
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPE---- 92 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~---- 92 (245)
.|+++||+|+|++ .++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|+++|+++...+.....
T Consensus 2 ~Lev~nl~k~yg~--~~al~~vs~~i~~GEi~~iiG~sGsGKSTLl~~i~Gl~~p~~G~I~~~G~~i~~~~~~~~~~~~~ 79 (258)
T d1b0ua_ 2 KLHVIDLHKRYGG--HEVLKGVSLQARAGDVISIIGSSGSGKSTFLRCINFLEKPSEGAIIVNGQNINLVRDKDGQLKVA 79 (258)
T ss_dssp CEEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEECCEEECTTSSEEES
T ss_pred eEEEEEEEEEECC--EEEEcceeeEEcCCCEEEEECCCCCcHHHHHHHHHcCccCCCCCEEECCEEeccCCccchhcccc
Confidence 4899999999964 5799999999999999999999999999999999999999999999999998653321100
Q ss_pred -----CCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHH
Q 035832 93 -----PLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKR 167 (245)
Q Consensus 93 -----~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkq 167 (245)
..++++||||||+|. +++.+||+||+.++....... ...+..+++.++++.+++.+...+++|.+|||||||
T Consensus 80 ~~~~~~~~r~~ig~vfQ~~~-l~~~~tv~env~~~~~~~~~~--~~~~~~~~~~~~l~~~~l~~~~~~~~p~~LSGG~~Q 156 (258)
T d1b0ua_ 80 DKNQLRLLRTRLTMVFQHFN-LWSHMTVLENVMEAPIQVLGL--SKHDARERALKYLAKVGIDERAQGKYPVHLSGGQQQ 156 (258)
T ss_dssp CHHHHHHHHHHEEEECSSCC-CCTTSCHHHHHHHHHHHTTCC--CHHHHHHHHHHHHHHTTCCHHHHTSCGGGSCHHHHH
T ss_pred cHhHHHHHhcceEEEEechh-hccchhcchhhhhhHHHhcCC--CHHHHHHHHHHHHHHcCCchhhhccCcccccHHHHH
Confidence 112467999999985 788899999998862111111 234456678899999999874458899999999999
Q ss_pred HHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 168 RLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 168 rv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
||+|||||+.+|++|||||||+|||+.++.+++++|+++++ +.|||+||||++++..+||||++|++|++++++.
T Consensus 157 Rv~iAraL~~~P~llilDEPT~gLD~~~~~~i~~ll~~l~~~g~til~vtHdl~~~~~~adri~vm~~G~iv~~g~ 232 (258)
T d1b0ua_ 157 RVSIARALAMEPDVLLFDEPTSALDPELVGEVLRIMQQLAEEGKTMVVVTHEMGFARHVSSHVIFLHQGKIEEEGD 232 (258)
T ss_dssp HHHHHHHHHTCCSEEEEESTTTTSCHHHHHHHHHHHHHHHHTTCCEEEECSCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred HHHHHHHHhcCCCEEEeccccccCCHHHHHHHHHhhhhhcccCCceEEEeCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 99999999999999999999999999999999999999975 6899999999999999999999999999997654
|
| >d1ji0a_ c.37.1.12 (A:) Branched chain aminoacid ABC transporter {Thermotoga maritima, TM1139 [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Branched chain aminoacid ABC transporter species: Thermotoga maritima, TM1139 [TaxId: 2336]
Probab=100.00 E-value=1.9e-64 Score=427.47 Aligned_cols=220 Identities=22% Similarity=0.369 Sum_probs=187.8
Q ss_pred cCCcceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCC
Q 035832 12 SCDYSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSP 91 (245)
Q Consensus 12 ~~~~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~ 91 (245)
|+.+++|+++||+|+|++ ..+|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|+++|+++...+..
T Consensus 1 M~sd~~Lev~~l~k~yg~--~~al~~vs~~i~~Gei~~liGpnGaGKSTl~~~i~Gl~~p~~G~I~~~G~~i~~~~~~-- 76 (240)
T d1ji0a_ 1 MVSDIVLEVQSLHVYYGA--IHAIKGIDLKVPRGQIVTLIGANGAGKTTTLSAIAGLVRAQKGKIIFNGQDITNKPAH-- 76 (240)
T ss_dssp CCCSEEEEEEEEEEEETT--EEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHH--
T ss_pred CCcceEEEEeeEEEEECC--EEEEeeeeEEECCCCEEEEECCCCCcHHHHHHHHhCCCCCCccEEEecccccccccHH--
Confidence 356789999999999974 5799999999999999999999999999999999999999999999999998654321
Q ss_pred CCCCCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHc-CCCCccCCCCCCCCChHHHHHHH
Q 035832 92 EPLPPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWV-GLDGTSLDKDPHSLSGGYKRRLA 170 (245)
Q Consensus 92 ~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~-~l~~~~~~~~~~~LSgGqkqrv~ 170 (245)
...+..++|+||++. +|+.+||+||+.++....... ....+.+.++++.+ ++.+. .++++++|||||||||+
T Consensus 77 -~~~r~gi~~~~q~~~-l~~~ltv~en~~~~~~~~~~~----~~~~~~~~~~~~~~~~l~~~-~~~~~~~LSGG~~Qrv~ 149 (240)
T d1ji0a_ 77 -VINRMGIALVPEGRR-IFPELTVYENLMMGAYNRKDK----EGIKRDLEWIFSLFPRLKER-LKQLGGTLSGGEQQMLA 149 (240)
T ss_dssp -HHHHTTEEEECSSCC-CCTTSBHHHHHHGGGTTCCCS----SHHHHHHHHHHHHCHHHHTT-TTSBSSSSCHHHHHHHH
T ss_pred -HHHHhcccccCcccc-cCCcccHHHHHHHHHHhcCCH----HHHHHHHHHHHHHhhChHHH-HhCchhhCCHHHHHHHH
Confidence 111345999999984 778899999998863222111 12233455566666 67665 79999999999999999
Q ss_pred HHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 171 LAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 171 iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
|||||+++|++|||||||+||||.++.+++++|+++++ ++|||++|||++++.++|||+++|++|++++++.
T Consensus 150 iAraL~~~P~lLllDEPt~gLD~~~~~~i~~~i~~l~~~g~til~~tH~l~~~~~~~drv~vl~~G~iv~~g~ 222 (240)
T d1ji0a_ 150 IGRALMSRPKLLMMDEPSLGLAPILVSEVFEVIQKINQEGTTILLVEQNALGALKVAHYGYVLETGQIVLEGK 222 (240)
T ss_dssp HHHHHTTCCSEEEEECTTTTCCHHHHHHHHHHHHHHHHTTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEE
T ss_pred HHHHHHhCCCEeeecCCCcCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 99999999999999999999999999999999999965 6999999999999999999999999999998764
|
| >d1g6ha_ c.37.1.12 (A:) MJ1267 {Archaeon Methanococcus jannaschii [TaxId: 2190]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: MJ1267 species: Archaeon Methanococcus jannaschii [TaxId: 2190]
Probab=100.00 E-value=1.4e-63 Score=425.80 Aligned_cols=221 Identities=24% Similarity=0.387 Sum_probs=190.6
Q ss_pred cceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCC
Q 035832 15 YSCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPL 94 (245)
Q Consensus 15 ~~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~ 94 (245)
+.+|+++||+++|++ .++|+||||++++||++||+||||||||||+|+|+|+++|++|+|+++|+++...+.. ..
T Consensus 2 M~iL~v~nlsk~yg~--~~aL~~vs~~v~~Gei~~liG~nGaGKSTLl~~i~Gl~~p~~G~I~~~g~~i~~~~~~---~~ 76 (254)
T d1g6ha_ 2 MEILRTENIVKYFGE--FKALDGVSISVNKGDVTLIIGPNGSGKSTLINVITGFLKADEGRVYFENKDITNKEPA---EL 76 (254)
T ss_dssp CEEEEEEEEEEEETT--EEEEEEECCEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEECTTCCHH---HH
T ss_pred cceEEEEEEEEEECC--eEEEcceEEEECCCCEEEEECCCCCcHHHHHHHHHCCCcCCCcEEEECCEeccchhHH---HH
Confidence 458999999999974 5799999999999999999999999999999999999999999999999998654321 11
Q ss_pred CCCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCc----------hhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChH
Q 035832 95 PPEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGS----------IQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGG 164 (245)
Q Consensus 95 ~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~----------~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgG 164 (245)
.+..|+|+||++. .++.+||+||+.++....... ....+...+++.++++.+++.+. .++++.+||||
T Consensus 77 ~~~gi~~v~Q~~~-~~~~ltv~enl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~-~~~~~~~LSgG 154 (254)
T d1g6ha_ 77 YHYGIVRTFQTPQ-PLKEMTVLENLLIGEICPGESPLNSLFYKKWIPKEEEMVEKAFKILEFLKLSHL-YDRKAGELSGG 154 (254)
T ss_dssp HHHTEEECCCCCG-GGGGSBHHHHHHGGGTSTTSCHHHHHHHCSSCCCCHHHHHHHHHHHHHTTCGGG-TTSBGGGSCHH
T ss_pred HHhcCCccCCccc-cCCCCeeeeeeeehhhhccccchhhhhhhcccccHHHHHHHHHHHHHhcCcchh-ccCchhhCCcH
Confidence 2345999999995 778999999999863211100 00112344568889999999875 79999999999
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 165 YKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 165 qkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
|||||+|||||+.+|++|||||||+|||+.++++++++|+++++ ++|||++|||++++.++||||++|++|++++++.
T Consensus 155 ~~Qrv~iAraL~~~P~llilDEPt~gLD~~~~~~i~~~i~~l~~~g~til~vsHdl~~~~~~~Drv~vm~~G~iv~~g~ 233 (254)
T d1g6ha_ 155 QMKLVEIGRALMTNPKMIVMDEPIAGVAPGLAHDIFNHVLELKAKGITFLIIEHRLDIVLNYIDHLYVMFNGQIIAEGR 233 (254)
T ss_dssp HHHHHHHHHHHHTCCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEECSCCSTTGGGCSEEEEEETTEEEEEEE
T ss_pred HHHHHHHHHHHHhCcCchhhcCCcccCCHHHHHHHHHHHHHHHHCCCEEEEEeCcHHHHHHhCCEEEEEeCCEEEEEec
Confidence 99999999999999999999999999999999999999999964 6999999999999999999999999999998864
|
| >d2onka1 c.37.1.12 (A:1-240) Molybdate/tungstate import ATP-binding protein WtpC (ModC) {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Molybdate/tungstate import ATP-binding protein WtpC (ModC) species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=100.00 E-value=3.2e-62 Score=411.40 Aligned_cols=207 Identities=30% Similarity=0.490 Sum_probs=182.1
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.|++ ++.++|++ .. + ||||++. +|+++|+||||||||||+|+|+|+++|++|+|.++|+++...+. .+
T Consensus 2 ~l~v-~~~k~~g~--~~-~-~vs~~~~-~e~~~liGpnGaGKSTll~~i~Gl~~p~~G~I~~~G~~i~~~~~------~~ 69 (240)
T d2onka1 2 FLKV-RAEKRLGN--FR-L-NVDFEMG-RDYCVLLGPTGAGKSVFLELIAGIVKPDRGEVRLNGADITPLPP------ER 69 (240)
T ss_dssp CEEE-EEEEEETT--EE-E-EEEEEEC-SSEEEEECCTTSSHHHHHHHHHTSSCCSEEEEEETTEECTTSCT------TT
T ss_pred EEEE-EEEEEECC--EE-E-EEEEEeC-CEEEEEECCCCChHHHHHHHHHcCCCCCceEEEECCEECCcCCH------HH
Confidence 4778 67899964 32 3 8999995 68999999999999999999999999999999999999865432 25
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
++||||||++. +|+.+||+||+.|++.. . .+.+..+++.++++.+||++. ++++|.+|||||||||+|||||+
T Consensus 70 r~ig~v~Q~~~-l~~~ltV~enl~~~l~~-~----~~~~~~~~v~~~l~~~gl~~~-~~~~~~~LSGG~kQRvaiAral~ 142 (240)
T d2onka1 70 RGIGFVPQDYA-LFPHLSVYRNIAYGLRN-V----ERVERDRRVREMAEKLGIAHL-LDRKPARLSGGERQRVALARALV 142 (240)
T ss_dssp SCCBCCCSSCC-CCTTSCHHHHHHTTCTT-S----CHHHHHHHHHHHHHTTTCTTT-TTCCGGGSCHHHHHHHHHHHHHT
T ss_pred cCceeeccchh-hcccchhhHhhhhhhcc-c----CHHHHHHHHHHHHHhcCcHhh-hhCChhhCCHHHHHHHHHHHHHh
Confidence 67999999984 78889999999997422 1 123445678999999999986 79999999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
.+|++|||||||+||||.++..+++.|+++.+ +.|||+||||++++..+|||+++|++|+++..+.
T Consensus 143 ~~P~illlDEPts~LD~~~~~~i~~~i~~l~~~~g~tvi~vtHd~~~~~~~adri~vm~~G~ii~~G~ 210 (240)
T d2onka1 143 IQPRLLLLDEPLSAVDLKTKGVLMEELRFVQREFDVPILHVTHDLIEAAMLADEVAVMLNGRIVEKGK 210 (240)
T ss_dssp TCCSSBEEESTTSSCCHHHHHHHHHHHHHHHHHHTCCEEEEESCHHHHHHHCSEEEEEETTEEEEEEC
T ss_pred ccCCceEecCccccCCHHHHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHhCCEEEEEECCEEEEEec
Confidence 99999999999999999999999999999853 6899999999999999999999999999998764
|
| >d1vpla_ c.37.1.12 (A:) Putative ABC transporter TM0544 {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter TM0544 species: Thermotoga maritima [TaxId: 2336]
Probab=100.00 E-value=2.6e-62 Score=413.77 Aligned_cols=213 Identities=29% Similarity=0.372 Sum_probs=187.7
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++||+|+|++ +++|+||||+|++||++||+||||||||||+|+|+|+++|++|+|.++|+++...+. ..++
T Consensus 3 I~v~nl~k~yg~--~~vl~~vs~~v~~Gei~glvG~nGaGKSTLl~~l~G~~~p~~G~i~i~G~~i~~~~~-----~~~~ 75 (238)
T d1vpla_ 3 VVVKDLRKRIGK--KEILKGISFEIEEGEIFGLIGPNGAGKTTTLRIISTLIKPSSGIVTVFGKNVVEEPH-----EVRK 75 (238)
T ss_dssp EEEEEEEEEETT--EEEEEEEEEEECTTCEEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTCHH-----HHHT
T ss_pred EEEEeEEEEECC--EEEEccceeEEcCCCEEEEECCCCCCHHHHHHHHhcCCCCCCCEEEECcEecccChH-----HHHh
Confidence 889999999974 679999999999999999999999999999999999999999999999999754321 2356
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhh
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQ 177 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~ 177 (245)
.+||+||++. +++.+|+.||+.+....... ...+..+.++.+++.+++.+. .++++.+||||||||++|||||+.
T Consensus 76 ~i~~vpq~~~-~~~~ltv~e~l~~~~~~~~~---~~~~~~~~~~~~l~~~~l~~~-~~~~~~~lSgG~~qrv~iA~al~~ 150 (238)
T d1vpla_ 76 LISYLPEEAG-AYRNMQGIEYLRFVAGFYAS---SSSEIEEMVERATEIAGLGEK-IKDRVSTYSKGMVRKLLIARALMV 150 (238)
T ss_dssp TEEEECTTCC-CCTTSBHHHHHHHHHHHHCC---CHHHHHHHHHHHHHHHCCGGG-GGSBGGGCCHHHHHHHHHHHHHTT
T ss_pred hEeEeeeccc-cCCCccHHHHHHHHHHhcCC---CHHHHHHHHHHHHHhCCCHHH-HhhhhhhCCHHHHHHHHHHHHHhc
Confidence 7999999974 77889999999775211111 133445678889999999875 799999999999999999999999
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
+|++|||||||+||||.++++++++|+++++ ++|||++|||++++..+||||++|++|+++++++
T Consensus 151 ~p~illLDEPt~gLD~~~~~~i~~~i~~~~~~g~tii~~tH~l~~~~~~~drv~vl~~G~iv~~g~ 216 (238)
T d1vpla_ 151 NPRLAILDEPTSGLDVLNAREVRKILKQASQEGLTILVSSHNMLEVEFLCDRIALIHNGTIVETGT 216 (238)
T ss_dssp CCSEEEEESTTTTCCHHHHHHHHHHHHHHHHTTCEEEEEECCHHHHTTTCSEEEEEETTEEEEEEE
T ss_pred CCCEEEecCCCCCCCHHHHHHHHHHHHHHHhcCCEEEEEeCCHHHHHHhCCEEEEEECCEEEEEcC
Confidence 9999999999999999999999999999864 6999999999999999999999999999998764
|
| >d2pmka1 c.37.1.12 (A:467-707) Haemolysin B ATP-binding protein {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Haemolysin B ATP-binding protein species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=1e-61 Score=410.56 Aligned_cols=217 Identities=24% Similarity=0.384 Sum_probs=176.8
Q ss_pred EEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCC
Q 035832 18 LEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPE 97 (245)
Q Consensus 18 l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~ 97 (245)
|+++||+|+|+++..++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++...+. ..+++
T Consensus 2 I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaIvG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~----~~lr~ 77 (241)
T d2pmka1 2 ITFRNIRFRYKPDSPVILDNINLSIKQGEVIGIVGRSGSGKSTLTKLIQRFYIPENGQVLIDGHDLALADP----NWLRR 77 (241)
T ss_dssp EEEEEEEEESSTTSCEEEEEEEEEEETTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEETTTSCH----HHHHH
T ss_pred eEEEEEEEEeCCCCcceEeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHhcCCCCCCEEEECCEEecccch----hhhhc
Confidence 78999999997656679999999999999999999999999999999999999999999999999865432 23467
Q ss_pred cEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 98 KVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 98 ~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
+||||||+|. ++..|++||+.++.+...............+.+.++.+ +++. ..+..+.+|||||||||+|||||
T Consensus 78 ~i~~v~Q~~~--lf~~Ti~eNi~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~t-~i~~~g~~LSGGq~QRvalARal 154 (241)
T d2pmka1 78 QVGVVLQDNV--LLNRSIIDNISLANPGMSVEKVIYAAKLAGAHDFISELREGYNT-IVGEQGAGLSGGQRQRIAIARAL 154 (241)
T ss_dssp HEEEECSSCC--CTTSBHHHHHCTTSTTCCHHHHHHHHHHHTCHHHHTTSTTGGGS-BCSTTTTCCCHHHHHHHHHHHHH
T ss_pred eEEEEecccc--cCCccccccccccCccccHHHHHHHHHHHhhHHHHHhhhcchhh-hcCCCCCccCHHHHHHHhhhhhh
Confidence 8999999984 45789999999874321110000000111122233332 2332 25678899999999999999999
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
+.+|++||||||||+||+.+.+.+++.|+++.+++|+|+|||+++.+ ..||||++|++|+|+..+.
T Consensus 155 ~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~-~~~D~i~vl~~G~Iv~~G~ 220 (241)
T d2pmka1 155 VNNPKILIFDEATSALDYESEHVIMRNMHKICKGRTVIIIAHRLSTV-KNADRIIVMEKGKIVEQGK 220 (241)
T ss_dssp TTCCSEEEECCCCSCCCHHHHHHHHHHHHHHHTTSEEEEECSSGGGG-TTSSEEEEEETTEEEEEEC
T ss_pred hcccchhhhhCCccccCHHHHHHHHHHHHHHhCCCEEEEEECCHHHH-HhCCEEEEEECCEEEEECC
Confidence 99999999999999999999999999999998889999999999976 5799999999999987654
|
| >d1mv5a_ c.37.1.12 (A:) Multidrug resistance ABC transporter LmrA, C-terminal domain {Lactococcus lactis [TaxId: 1358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter LmrA, C-terminal domain species: Lactococcus lactis [TaxId: 1358]
Probab=100.00 E-value=4.5e-61 Score=407.22 Aligned_cols=210 Identities=27% Similarity=0.379 Sum_probs=173.5
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
||+++||+|+|+++ +++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++...+. ..++
T Consensus 1 mle~knvsf~Y~~~-~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~----~~~r 75 (242)
T d1mv5a_ 1 MLSARHVDFAYDDS-EQILRDISFEAQPNSIIAFAGPSGGGKSTIFSLLERFYQPTAGEITIDGQPIDNISL----ENWR 75 (242)
T ss_dssp CEEEEEEEECSSSS-SCSEEEEEEEECTTEEEEEECCTTSSHHHHHHHHTTSSCCSBSCEEETTEESTTTSC----SCCT
T ss_pred CEEEEEEEEECCCC-CceeeeeEEEEcCCCEEEEECCCCCCHHHHHHHHHHhhCCCCCEEEECCEEeccccH----HHHH
Confidence 69999999999753 579999999999999999999999999999999999999999999999999865432 2356
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCc----------cCCCCCCCCChHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGT----------SLDKDPHSLSGGYK 166 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~----------~~~~~~~~LSgGqk 166 (245)
++||||||+|. +| ..|++||+.++...... ... +.+.++..++... ...+.+.+||||||
T Consensus 76 ~~i~~v~Q~~~-lf-~~ti~eNi~~~~~~~~~----~~~----~~~~~~~~~~~~~~~~~~~~~~~~i~~~g~~LSGGqk 145 (242)
T d1mv5a_ 76 SQIGFVSQDSA-IM-AGTIRENLTYGLEGDYT----DED----LWQVLDLAFARSFVENMPDQLNTEVGERGVKISGGQR 145 (242)
T ss_dssp TTCCEECCSSC-CC-CEEHHHHTTSCTTSCSC----HHH----HHHHHHHHTCTTTTTSSTTGGGCEESTTSBCCCHHHH
T ss_pred hheEEEccccc-cC-Ccchhhheecccccccc----hhh----HHHHHHHHHhhhhhccCcccccccccCCCCCCCHHHH
Confidence 78999999984 44 56999999886332111 111 1222222222111 12445678999999
Q ss_pred HHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 167 RRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 167 qrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
|||+|||||+.+|++||||||||+||+.++..+++.|+++.+++|+|+|||+++.+. .||||++|++|++++.+.
T Consensus 146 QRv~iARal~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~~-~~D~i~vl~~G~iv~~G~ 220 (242)
T d1mv5a_ 146 QRLAIARAFLRNPKILMLDEATASLDSESESMVQKALDSLMKGRTTLVIAHRLSTIV-DADKIYFIEKGQITGSGK 220 (242)
T ss_dssp HHHHHHHHHHHCCSEEEEECCSCSSCSSSCCHHHHHHHHHHTTSEEEEECCSHHHHH-HCSEEEEEETTEECCCSC
T ss_pred HHHHHHHHHhcCCCEEEecCCccccCHHHHHHHHHHHHHHcCCCEEEEEECCHHHHH-hCCEEEEEECCEEEEECC
Confidence 999999999999999999999999999999999999999988899999999999875 699999999999987653
|
| >d1jj7a_ c.37.1.12 (A:) Peptide transporter Tap1, C-terminal ABC domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Peptide transporter Tap1, C-terminal ABC domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=100.00 E-value=9.5e-61 Score=407.27 Aligned_cols=218 Identities=25% Similarity=0.389 Sum_probs=179.2
Q ss_pred eEEEEeEEEECCCC-ccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGT-QVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 17 ~l~~~~l~~~y~~~-~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
.|+++||+|+|++. +..+|+||||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++...+. ..+
T Consensus 11 ~I~~~nvsf~Y~~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~li~gl~~p~~G~I~i~g~~i~~~~~----~~~ 86 (251)
T d1jj7a_ 11 LVQFQDVSFAYPNRPDVLVLQGLTFTLRPGEVTALVGPNGSGKSTVAALLQNLYQPTGGQLLLDGKPLPQYEH----RYL 86 (251)
T ss_dssp CEEEEEEEECCTTSTTCCSEEEEEEEECTTCEEEEECSTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGGBCH----HHH
T ss_pred eEEEEEEEEECCCCCCCEeEeceEEEEcCCCEEEEECCCCCcHHHHHHHHhcccCCCcCEEEECCEecchhhh----HHH
Confidence 49999999999753 3469999999999999999999999999999999999999999999999999865332 124
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhH-HHHHHHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQL-KEYLALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALA 172 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~-~~~~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~iA 172 (245)
+++++||||+|. + +..|++||+.++.......... .......+.+.++.+ +++.. .++.+.+|||||||||+||
T Consensus 87 r~~i~~v~Q~~~-l-f~~tv~eni~~g~~~~~~~~~~~~~~~~~~~~~~i~~l~~g~~~~-i~~~~~~LSGGqkQRvaiA 163 (251)
T d1jj7a_ 87 HRQVAAVGQEPQ-V-FGRSLQENIAYGLTQKPTMEEITAAAVKSGAHSFISGLPQGYDTE-VDEAGSQLSGGQRQAVALA 163 (251)
T ss_dssp HHHEEEECSSCC-C-CSSBHHHHHHCSCSSCCCHHHHHHHHHHHTCHHHHHTSTTGGGCB-CCSSCSSSCHHHHHHHHHH
T ss_pred HHHhhhcccccc-c-cCcchhhhhhhhhcccchHHHHHHHHHHHHHHHHHHhccccchhh-HhccCccCChhHceEEEEe
Confidence 578999999984 4 4679999999984332211111 111122234455555 45543 6788999999999999999
Q ss_pred HHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 173 IQLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 173 ral~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
|||+.+|++||||||||+||+.+..++++.|.++.+ ++|+|+||||++.+ ..||||++|++|+|++.++
T Consensus 164 Ral~~~p~ililDEpTs~LD~~~~~~i~~~l~~l~~~~~~Tvi~itH~l~~~-~~aDrI~vl~~G~iv~~Gt 234 (251)
T d1jj7a_ 164 RALIRKPCVLILDDATSALDANSQLQVEQLLYESPERYSRSVLLITQHLSLV-EQADHILFLEGGAIREGGT 234 (251)
T ss_dssp HHHTTCCSEEEEESTTTTCCHHHHHHHHHHHHTCGGGGGCEEEEECSCHHHH-HTCSEEEEEETTEEEEEEC
T ss_pred eccccCCcEEEecCcCcccChhhHHHHHHHHHHHhhhcCCEEEEEeCCHHHH-HhCCEEEEEECCEEEEECC
Confidence 999999999999999999999999999999999864 58999999999976 5699999999999988754
|
| >d3b60a1 c.37.1.12 (A:329-581) Multidrug resistance ABC transporter MsbA, C-terminal domain {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Multidrug resistance ABC transporter MsbA, C-terminal domain species: Salmonella typhimurium [TaxId: 90371]
Probab=100.00 E-value=2.1e-60 Score=405.52 Aligned_cols=218 Identities=27% Similarity=0.376 Sum_probs=180.4
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
-|+++||+|+|+++..++|+||||+|++||++||+||||||||||+++|+|+++|++|+|+++|+++...+. ..++
T Consensus 13 ~I~~~nvsf~Y~~~~~~~L~~isl~i~~Ge~iaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~----~~~r 88 (253)
T d3b60a1 13 DLEFRNVTFTYPGREVPALRNINLKIPAGKTVALVGRSGSGKSTIASLITRFYDIDEGHILMDGHDLREYTL----ASLR 88 (253)
T ss_dssp CEEEEEEEECSSSSSCCSEEEEEEEECTTCEEEEEECTTSSHHHHHHHHTTTTCCSEEEEEETTEETTTBCH----HHHH
T ss_pred EEEEEEEEEEeCCCCCceeeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccCCCccEEEECCcccchhhh----hhhh
Confidence 399999999998666679999999999999999999999999999999999999999999999999865432 1235
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHH-HHHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEY-LALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
++|+|+||++. ++..|+.+|+.++............. ....+.+.++.+ |++.. .++.+.+|||||||||+|||
T Consensus 89 ~~i~~v~Q~~~--l~~~ti~~n~~~~~~~~~~~~~i~~a~~~~~l~~~i~~l~~gl~t~-~~~~~~~LSGGqkQRvaiAR 165 (253)
T d3b60a1 89 NQVALVSQNVH--LFNDTVANNIAYARTEEYSREQIEEAARMAYAMDFINKMDNGLDTI-IGENGVLLSGGQRQRIAIAR 165 (253)
T ss_dssp HTEEEECSSCC--CCSSBHHHHHHTTTTSCCCHHHHHHHHHTTTCHHHHHHSTTGGGSB-CCTTSCSSCHHHHHHHHHHH
T ss_pred heEEEEeeccc--cCCcchhhhhhhcCcccCCHHHHHHHHHHHhHHHHHHhccccchhh-hcCCCCCcCHHHHHHHHHHH
Confidence 67999999984 45789999999874322111100000 011123445554 56553 67889999999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
||+.+|++||||||||+||+.++..+++.|+++.+++|+|+||||++.+ ..||+|++|++|+|++.++
T Consensus 166 al~~~p~ililDEpts~LD~~~~~~i~~~l~~l~~~~Tvi~itH~l~~~-~~~D~v~vl~~G~Iv~~G~ 233 (253)
T d3b60a1 166 ALLRDSPILILDEATSALDTESERAIQAALDELQKNRTSLVIAHRLSTI-EQADEIVVVEDGIIVERGT 233 (253)
T ss_dssp HHHHCCSEEEEETTTSSCCHHHHHHHHHHHHHHHTTSEEEEECSCGGGT-TTCSEEEEEETTEEEEEEC
T ss_pred HHhcCCCEEEeccccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHH-HhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999998889999999999977 5799999999999988764
|
| >d2hyda1 c.37.1.12 (A:324-578) Putative multidrug export ATP-binding/permease protein SAV1866 {Staphylococcus aureus [TaxId: 1280]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative multidrug export ATP-binding/permease protein SAV1866 species: Staphylococcus aureus [TaxId: 1280]
Probab=100.00 E-value=2.6e-60 Score=404.87 Aligned_cols=217 Identities=27% Similarity=0.385 Sum_probs=176.1
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.|+++||+|+|+++..++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++|+++...+. ..+|
T Consensus 16 ~I~~~nvsf~Y~~~~~~vL~~isl~i~~Ge~vaivG~sGsGKSTLl~ll~gl~~p~~G~I~i~g~~i~~~~~----~~lr 91 (255)
T d2hyda1 16 RIDIDHVSFQYNDNEAPILKDINLSIEKGETVAFVGMSGGGKSTLINLIPRFYDVTSGQILIDGHNIKDFLT----GSLR 91 (255)
T ss_dssp CEEEEEEEECSCSSSCCSEEEEEEEECTTCEEEEECSTTSSHHHHHTTTTTSSCCSEEEEEETTEEGGGSCH----HHHH
T ss_pred EEEEEEEEEEeCCCCCcceeceEEEEcCCCEEEEECCCCCcHHHHHHHHHhcCCccccccccCCEEcccCCH----HHhh
Confidence 399999999998766689999999999999999999999999999999999999999999999999865332 2346
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHH-HHHHHHHHHHHc--CCCCccCCCCCCCCChHHHHHHHHHH
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEY-LALNLQRAINWV--GLDGTSLDKDPHSLSGGYKRRLALAI 173 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~-~~~~~~~~l~~~--~l~~~~~~~~~~~LSgGqkqrv~iAr 173 (245)
++|+||||++. ++..||+||+.++.+.... ....+. ....+.+.++.+ |++.. ....+.+||||||||++|||
T Consensus 92 ~~i~~v~Q~~~--lf~~Ti~eNi~~g~~~~~~-~~~~~al~~~~l~~~i~~lp~gl~t~-i~~~g~~LSgGq~QRi~iAR 167 (255)
T d2hyda1 92 NQIGLVQQDNI--LFSDTVKENILLGRPTATD-EEVVEAAKMANAHDFIMNLPQGYDTE-VGERGVKLSGGQKQRLSIAR 167 (255)
T ss_dssp HTEEEECSSCC--CCSSBHHHHHGGGCSSCCH-HHHHHHHHHTTCHHHHHTSTTGGGCB-CCGGGTTSCHHHHHHHHHHH
T ss_pred heeeeeecccc--CCCCCHHHHHhccCcCCCH-HHHHHHHHHhCCHHHHHhccccccch-hcCCCCCcCHHHHHHHHHHH
Confidence 78999999983 4578999999998432211 000000 000112222222 23322 45567789999999999999
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
||+.+|++||||||||+||+.+...+++.|.++.+++|+|+|||+++.+ ..||||++|++|+++..++
T Consensus 168 al~~~p~ililDEpts~LD~~t~~~i~~~l~~l~~~~TvI~itH~~~~~-~~~D~ii~l~~G~iv~~G~ 235 (255)
T d2hyda1 168 IFLNNPPILILDEATSALDLESESIIQEALDVLSKDRTTLIVAHRLSTI-THADKIVVIENGHIVETGT 235 (255)
T ss_dssp HHHHCCSEEEEESTTTTCCHHHHHHHHHHHHHHTTTSEEEEECSSGGGT-TTCSEEEEEETTEEEEEEC
T ss_pred HHhcCCCEEEEeCccccCCHHHHHHHHHHHHHHhcCCEEEEEeCCHHHH-HhCCEEEEEECCEEEEECC
Confidence 9999999999999999999999999999999998889999999999976 5799999999999988764
|
| >d1l7vc_ c.37.1.12 (C:) ABC transporter involved in vitamin B12 uptake, BtuD {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: ABC transporter involved in vitamin B12 uptake, BtuD species: Escherichia coli [TaxId: 562]
Probab=100.00 E-value=5.3e-55 Score=367.82 Aligned_cols=206 Identities=26% Similarity=0.338 Sum_probs=175.8
Q ss_pred ceEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCC
Q 035832 16 SCLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLP 95 (245)
Q Consensus 16 ~~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~ 95 (245)
.+|+++||+++| +|+||||+|++||++||+||||||||||+++|+|+. |++|+|.++|+++...+.. .+
T Consensus 2 ~il~~~dv~~~~------~l~~isl~I~~Gei~~iiG~nGaGKSTLl~~l~Gl~-~~~G~I~~~g~~i~~~~~~----~~ 70 (231)
T d1l7vc_ 2 IVMQLQDVAEST------RLGPLSGEVRAGEILHLVGPNGAGKSTLLARMAGMT-SGKGSIQFAGQPLEAWSAT----KL 70 (231)
T ss_dssp EEEEEEEECCTT------TSCSEEEEEETTCEEECBCCTTSSHHHHHHHHHTSC-CCSSEEEESSSBGGGSCHH----HH
T ss_pred eEEEEECcccCc------eecCEEEEEcCCCEEEEECCCCCcHHHHHHHHhCCC-CCceEEEECCEECCcCCHH----HH
Confidence 479999997654 599999999999999999999999999999999976 6899999999987543211 12
Q ss_pred CCcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHH
Q 035832 96 PEKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQL 175 (245)
Q Consensus 96 ~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral 175 (245)
+...+|++|+.. .....++++++.++..... ..+.+.++++.+++.+. +++++.+|||||||||+|||||
T Consensus 71 ~~~~~~~~~~~~-~~~~~~v~~~~~~~~~~~~--------~~~~~~~~~~~~~l~~~-~~~~~~~LSgG~~Qrv~iA~al 140 (231)
T d1l7vc_ 71 ALHRAYLSQQQT-PPFATPVWHYLTLHQHDKT--------RTELLNDVAGALALDDK-LGRSTNQLSGGEWQRVRLAAVV 140 (231)
T ss_dssp HHHEEEECSCCC-CCSSCBHHHHHHHHCSCTT--------CHHHHHHHHHHTTCTTT-TTSBGGGCCHHHHHHHHHHHHH
T ss_pred Hhhceeeecccc-CCccccHHHHhhhccchhh--------HHHHHHHHHHhcCCHhH-hCcChhhcCHHHHHHHHHHHHH
Confidence 346899999874 3446789999887632211 12346778889999986 7999999999999999999999
Q ss_pred hh-------CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 176 VQ-------VPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 176 ~~-------~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
++ +|+||||||||+|||+.++..++++|+++++ ++|||++|||++++..+|||+++|++|++++++.
T Consensus 141 ~~~~p~~~p~p~llllDEPt~gLD~~~~~~i~~~i~~l~~~g~tii~vtHdl~~~~~~~dri~vl~~G~iv~~G~ 215 (231)
T d1l7vc_ 141 LQITPQANPAGQLLLLDEPMNSLDVAQQSALDKILSALCQQGLAIVMSSHDLNHTLRHAHRAWLLKGGKMLASGR 215 (231)
T ss_dssp HHHCTTTCTTCCEEEESSCSTTCCHHHHHHHHHHHHHHHHTTCEEEECCCCHHHHHHHCSBCCBEETTEECCCSB
T ss_pred HhhCcccCCCCCEEEEcCCCCCCCHHHHHHHHHHHHHHHhCCCEEEEEeCCHHHHHHHCCEEEEEECCEEEEECC
Confidence 97 7799999999999999999999999999964 6899999999999999999999999999988764
|
| >d1r0wa_ c.37.1.12 (A:) Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cystic fibrosis transmembrane conductance regulator, CFTR, nucleotide-binding domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=100.00 E-value=1.9e-53 Score=367.61 Aligned_cols=188 Identities=23% Similarity=0.338 Sum_probs=148.8
Q ss_pred cceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCC
Q 035832 32 VDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFV 111 (245)
Q Consensus 32 ~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~ 111 (245)
+++|+||||+|++||++||+||||||||||+++|+|+++|++|+|.++| +++|+||++. ++
T Consensus 49 ~pvL~~isl~i~~Ge~vaivG~nGsGKSTLl~~i~Gl~~p~~G~I~~~g-----------------~i~~v~Q~~~--l~ 109 (281)
T d1r0wa_ 49 NPVLKNINLNIEKGEMLAITGSTGSGKTSLLMLILGELEASEGIIKHSG-----------------RVSFCSQFSW--IM 109 (281)
T ss_dssp CEEEEEEEEEECTTCEEEEEESTTSSHHHHHHHHHTSSCCSEEEEECCS-----------------CEEEECSSCC--CC
T ss_pred CeEEeCeEEEEcCCCEEEEECCCCChHHHHHHHHhCCCcCCCcEEEECC-----------------EEEEEecccc--cc
Confidence 4799999999999999999999999999999999999999999999864 3899999984 44
Q ss_pred cccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCC---ccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCC
Q 035832 112 ADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDG---TSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPL 188 (245)
Q Consensus 112 ~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~---~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPt 188 (245)
+.|++||+.++... .... .....+.+........+.+ ...++.+.+|||||||||+|||||+.+|+||||||||
T Consensus 110 ~~tv~eni~~~~~~--~~~~-~~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~LSgGqkQRv~lARaL~~~p~illLDEPt 186 (281)
T d1r0wa_ 110 PGTIKENIIFGVSY--DEYR-YKSVVKACQLQQDITKFAEQDNTVLGEGGVTLSGGQRARISLARAVYKDADLYLLDSPF 186 (281)
T ss_dssp SEEHHHHHTTTSCC--CHHH-HHHHHHHTTCHHHHTTSTTGGGCEECTTCTTSCHHHHHHHHHHHHHHSCCSEEEEESCC
T ss_pred Cceeeccccccccc--cchH-HHHHHHHHHhHHHHHhchhhhhhhhhhhccCCCHHHHHHHHHHHHHHhCccchhhcCcc
Confidence 67999999987321 1111 0111111110111122221 1245677889999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHH-HHhhcCceEEEEecChhHHHhhccEEEEEeCCeEEEecc
Q 035832 189 AGLDWKARADVVKLL-KHLKKELTILVVSHDLKEMAALVDHSWRMDMGGFLVEQR 242 (245)
Q Consensus 189 s~LD~~~~~~i~~~l-~~l~~~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~~~~ 242 (245)
++||+.+++.+++.+ ..+.+++|+|+|||+++.+ .+||||++|++|+++..+.
T Consensus 187 s~LD~~~~~~i~~~~~~~~~~~~tvi~itH~~~~l-~~aDrI~vl~~G~i~~~Gt 240 (281)
T d1r0wa_ 187 GYLDVFTEEQVFESCVCKLMANKTRILVTSKMEHL-RKADKILILHQGSSYFYGT 240 (281)
T ss_dssp CSSCHHHHHHHHHHCCCCCTTTSEEEEECSCHHHH-HTCSEEEEEETTEEEEEEC
T ss_pred ccCCHHHHHHHHHHHHHHhhCCCEEEEEechHHHH-HhCCEEEEEECCEEEEECC
Confidence 999999999998764 4445578999999999876 6899999999999988764
|
| >d1sgwa_ c.37.1.12 (A:) Putative ABC transporter PF0895 {Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Putative ABC transporter PF0895 species: Pyrococcus furiosus [TaxId: 2261]
Probab=100.00 E-value=1.3e-52 Score=346.08 Aligned_cols=194 Identities=23% Similarity=0.246 Sum_probs=159.6
Q ss_pred eEEEEeEEEECCCCccceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCC
Q 035832 17 CLEVRDVSYRPPGTQVDILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPP 96 (245)
Q Consensus 17 ~l~~~~l~~~y~~~~~~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~ 96 (245)
.|+++||+++|+ +++|+||||+|++||+++|+||||||||||+|+|+|+++|++|+|.++|+++.. .+
T Consensus 2 ~lev~~ls~~y~---~~vl~~is~~i~~Gei~~l~G~NGsGKSTLl~~i~gl~~p~~G~I~~~g~~i~~---------~~ 69 (200)
T d1sgwa_ 2 KLEIRDLSVGYD---KPVLERITMTIEKGNVVNFHGPNGIGKTTLLKTISTYLKPLKGEIIYNGVPITK---------VK 69 (200)
T ss_dssp EEEEEEEEEESS---SEEEEEEEEEEETTCCEEEECCTTSSHHHHHHHHTTSSCCSEEEEEETTEEGGG---------GG
T ss_pred eEEEEEEEEEeC---CeEEeceEEEEcCCCEEEEECCCCChHHHHHHHHhcccccCCCEEEECCEehhH---------hc
Confidence 489999999994 369999999999999999999999999999999999999999999999998743 24
Q ss_pred CcEEEEecCCCCCCCcccHHHHHHhcCCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHh
Q 035832 97 EKVGIVFQFPERYFVADNVLDEVIFGWPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLV 176 (245)
Q Consensus 97 ~~i~~v~Q~~~~~~~~~tv~e~l~~~~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~ 176 (245)
.+++|+||++. ++...|+.+++.+......... ....+.++++.+++.+ .++++.+|||||||||+|||||+
T Consensus 70 ~~i~~~~~~~~-~~~~~t~~~~l~~~~~~~~~~~-----~~~~~~~~l~~~~~~~--~~~~~~~LSgG~~qrv~ia~al~ 141 (200)
T d1sgwa_ 70 GKIFFLPEEII-VPRKISVEDYLKAVASLYGVKV-----NKNEIMDALESVEVLD--LKKKLGELSQGTIRRVQLASTLL 141 (200)
T ss_dssp GGEEEECSSCC-CCTTSBHHHHHHHHHHHTTCCC-----CHHHHHHHHHHTTCCC--TTSBGGGSCHHHHHHHHHHHHTT
T ss_pred CcEEEEeeccc-CCCCcCHHHHHHHHHHhcCCcc-----CHHHHHHHHHHcCCcc--cccccCcCCCcHHHHHHHHHHHh
Confidence 67999999974 5567899999876411110011 1123556788888865 36789999999999999999999
Q ss_pred hCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc--CceEEEEecChhHHHhhccEEEEEeC
Q 035832 177 QVPDLLILDEPLAGLDWKARADVVKLLKHLKK--ELTILVVSHDLKEMAALVDHSWRMDM 234 (245)
Q Consensus 177 ~~p~llllDEPts~LD~~~~~~i~~~l~~l~~--~~tiii~tHd~~~~~~~~d~v~~l~~ 234 (245)
.+|+++||||||+|||+.+++++++.|.++.+ +.+||.++|++ .+||++.+|++
T Consensus 142 ~~~~llllDEPt~gLD~~~~~~i~~~l~~~~~~~~~~ii~~~~~l----~~~D~~~~l~~ 197 (200)
T d1sgwa_ 142 VNAEIYVLDDPVVAIDEDSKHKVLKSILEILKEKGIVIISSREEL----SYCDVNENLHK 197 (200)
T ss_dssp SCCSEEEEESTTTTSCTTTHHHHHHHHHHHHHHHSEEEEEESSCC----TTSSEEEEGGG
T ss_pred cCCCEEEEcCcccccCHHHHHHHHHHHHHHHhCCCEEEEEEechh----hhcchhhheee
Confidence 99999999999999999999999999999854 34555555554 47999998863
|
| >d1ye8a1 c.37.1.11 (A:1-178) Hypothetical kinase-like protein Aq_1292 {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hypothetical kinase-like protein Aq 1292 species: Aquifex aeolicus [TaxId: 63363]
Probab=99.79 E-value=6.1e-22 Score=156.83 Aligned_cols=152 Identities=14% Similarity=0.095 Sum_probs=98.8
Q ss_pred EEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCC---CCcccHHHHHHhcCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERY---FVADNVLDEVIFGWP 124 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~---~~~~tv~e~l~~~~~ 124 (245)
++|+||||||||||+++|+|.++|+.|.+.+.+.+.... ..+.++........ +..........+
T Consensus 3 i~I~G~~G~GKSTLl~~i~~~l~~~~g~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--- 70 (178)
T d1ye8a1 3 IIITGEPGVGKTTLVKKIVERLGKRAIGFWTEEVRDPET---------KKRTGFRIITTEGKKKIFSSKFFTSKKLV--- 70 (178)
T ss_dssp EEEECCTTSSHHHHHHHHHHHHGGGEEEEEEEEEC---------------CCEEEEEETTCCEEEEEETTCCCSSEE---
T ss_pred EEEECCCCcHHHHHHHHHHhcCCCCcceEEECCcchHHH---------HHhhhhhhhhhhHHHHHHhhhhhhhhhhh---
Confidence 789999999999999999999999999999987654221 11223222111000 000000000000
Q ss_pred CCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHH
Q 035832 125 RQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLK 204 (245)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~ 204 (245)
.. .+ .+....++|+|+++|.++++++..+|+++++|||....+ ....+++.+.
T Consensus 71 ---~~-----------------~~-----~~~~~~~~~~~~~~~~~l~~~~~~~~~vlllDE~~~~~~--~~~~~~~~l~ 123 (178)
T d1ye8a1 71 ---GS-----------------YG-----VNVQYFEELAIPILERAYREAKKDRRKVIIIDEIGKMEL--FSKKFRDLVR 123 (178)
T ss_dssp ---TT-----------------EE-----ECHHHHHHHHHHHHHHHHHHHHHCTTCEEEECCCSTTGG--GCHHHHHHHH
T ss_pred ---hh-----------------hh-----cCcchhhhhhhhhHHHHHHHHHhcCCCceeecCCCccch--hhHHHHHHHH
Confidence 00 00 111223588999999999999999999999999854432 3345566666
Q ss_pred Hh-hc-CceEEEEecChhHHHhhccEEEEEeCCeEEE
Q 035832 205 HL-KK-ELTILVVSHDLKEMAALVDHSWRMDMGGFLV 239 (245)
Q Consensus 205 ~l-~~-~~tiii~tHd~~~~~~~~d~v~~l~~G~i~~ 239 (245)
++ .. +.++|+++|+... ..+|+++..+.+|+++.
T Consensus 124 ~~l~~~~~~il~~~h~~~~-~~~~~~i~~~~~~~i~~ 159 (178)
T d1ye8a1 124 QIMHDPNVNVVATIPIRDV-HPLVKEIRRLPGAVLIE 159 (178)
T ss_dssp HHHTCTTSEEEEECCSSCC-SHHHHHHHTCTTCEEEE
T ss_pred HHhccCCCEEEEEEccHHH-HHhhceEEEEeCCEEEE
Confidence 54 33 5899999999764 56899999999999875
|
| >d1e69a_ c.37.1.12 (A:) Smc head domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Thermotoga maritima [TaxId: 2336]
Probab=99.53 E-value=4.5e-13 Score=113.89 Aligned_cols=78 Identities=28% Similarity=0.291 Sum_probs=66.1
Q ss_pred CCCCCChHHHHHHHHHHH----HhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHHHhhccEEEE-
Q 035832 157 DPHSLSGGYKRRLALAIQ----LVQVPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEMAALVDHSWR- 231 (245)
Q Consensus 157 ~~~~LSgGqkqrv~iAra----l~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~~~~~d~v~~- 231 (245)
....+|+|||+...++.. ...+|.++++|||-++|+|.....+.+.|++..++.-||++||.+..+ ..+|+++.
T Consensus 216 ~~~~~~~g~~~l~~~~~~~~~~~~~~~~~~~iDEpe~~Lhp~~~~~l~~~l~~~~~~~QviitTHsp~~~-~~~d~~~~v 294 (308)
T d1e69a_ 216 KLSLLSGGEKALVGLALLFALMEIKPSPFYVLDEVDSPLDDYNAERFKRLLKENSKHTQFIVITHNKIVM-EAADLLHGV 294 (308)
T ss_dssp BGGGSCHHHHHHHHHHHHHHHTTTSCCSEEEEESCCSSCCHHHHHHHHHHHHHHTTTSEEEEECCCTTGG-GGCSEEEEE
T ss_pred hhhhhhHHHhhHHHHHhhhhhhhhccCchhhhhhccccCCHHHHHHHHHHHHHhccCCEEEEEECCHHHH-HhcccEEEE
Confidence 356899999999877665 456679999999999999999999999999987778899999999876 57799865
Q ss_pred -EeCC
Q 035832 232 -MDMG 235 (245)
Q Consensus 232 -l~~G 235 (245)
+++|
T Consensus 295 ~~~~g 299 (308)
T d1e69a_ 295 TMVNG 299 (308)
T ss_dssp EESSS
T ss_pred EEeCC
Confidence 5555
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.23 E-value=1.6e-11 Score=107.91 Aligned_cols=75 Identities=27% Similarity=0.301 Sum_probs=63.2
Q ss_pred CCCCCChHHHHHHHHHHHH----hhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHHhhccEEEE
Q 035832 157 DPHSLSGGYKRRLALAIQL----VQVPDLLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMAALVDHSWR 231 (245)
Q Consensus 157 ~~~~LSgGqkqrv~iAral----~~~p~llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~~~~d~v~~ 231 (245)
....||||||.+++||..+ ..++++++||||+++||+..+..+.++|.++.. +.-+|++||++.. ...+|+++.
T Consensus 329 ~~~~lSgGEk~~~~lal~lal~~~~~~pililDE~d~~Ld~~~~~~~~~~l~~~~~~~~Q~I~iTH~~~~-~~~ad~~~~ 407 (427)
T d1w1wa_ 329 DMEYLSGGEKTVAALALLFAINSYQPSPFFVLDEVDAALDITNVQRIAAYIRRHRNPDLQFIVISLKNTM-FEKSDALVG 407 (427)
T ss_dssp CGGGSCHHHHHHHHHHHHHHHHTSSCCSEEEESSTTTTCCHHHHHHHHHHHHHHCBTTBEEEEECSCHHH-HTTCSEEEE
T ss_pred hhhhhccchHHHHHHHHHHHHhcCCCCCEEEEeCCCCCCCHHHHHHHHHHHHHHhCCCCEEEEEeCCHHH-HHhcccEEE
Confidence 4467899999998877554 567889999999999999999999999988854 4579999999875 568999876
Q ss_pred E
Q 035832 232 M 232 (245)
Q Consensus 232 l 232 (245)
+
T Consensus 408 V 408 (427)
T d1w1wa_ 408 V 408 (427)
T ss_dssp E
T ss_pred E
Confidence 5
|
| >d1ewqa2 c.37.1.12 (A:542-765) DNA repair protein MutS, the C-terminal domain {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Thermus aquaticus [TaxId: 271]
Probab=98.58 E-value=1e-06 Score=71.35 Aligned_cols=48 Identities=19% Similarity=0.201 Sum_probs=36.8
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHHHH-HHhhc-CceEEEEecChhHHH
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVKLL-KHLKK-ELTILVVSHDLKEMA 223 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~~l-~~l~~-~~tiii~tHd~~~~~ 223 (245)
+.+..++|+||+..|=|+.....+...+ +.+.+ +..++++||..+...
T Consensus 112 ~~~~sLvliDE~~~gT~~~eg~ala~aile~L~~~~~~~i~tTH~~eL~~ 161 (224)
T d1ewqa2 112 ATENSLVLLDEVGRGTSSLDGVAIATAVAEALHERRAYTLFATHYFELTA 161 (224)
T ss_dssp CCTTEEEEEESTTTTSCHHHHHHHHHHHHHHHHHHTCEEEEECCCHHHHT
T ss_pred CCCCcEEeecccccCcchhhhcchHHHHHHHHhhcCcceEEeeechhhhh
Confidence 3556699999999999998887775544 44543 578999999977644
|
| >d1wb9a2 c.37.1.12 (A:567-800) DNA repair protein MutS, the C-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: DNA repair protein MutS, the C-terminal domain species: Escherichia coli [TaxId: 562]
Probab=98.51 E-value=4e-07 Score=74.40 Aligned_cols=47 Identities=17% Similarity=0.099 Sum_probs=35.7
Q ss_pred hhCCCEEEEeCCCCCCCHHHHHHHHH-HHHHhh-cC-ceEEEEecChhHH
Q 035832 176 VQVPDLLILDEPLAGLDWKARADVVK-LLKHLK-KE-LTILVVSHDLKEM 222 (245)
Q Consensus 176 ~~~p~llllDEPts~LD~~~~~~i~~-~l~~l~-~~-~tiii~tHd~~~~ 222 (245)
+.+..++|+||+..|=++.....+.. .+..+. +. ..++++||..+..
T Consensus 118 ~~~~sLvliDE~~~gT~~~eg~~l~~a~l~~l~~~~~~~~i~tTH~~~l~ 167 (234)
T d1wb9a2 118 ATEYSLVLMDEIGRGTSTYDGLSLAWACAENLANKIKALTLFATHYFELT 167 (234)
T ss_dssp CCTTEEEEEESCCCCSSSSHHHHHHHHHHHHHHHTTCCEEEEECSCGGGG
T ss_pred cccccEEeecccccCCChhhhhHHHHHhhhhhhccccceEEEecchHHHh
Confidence 44556999999999999999888754 456664 33 6789999986543
|
| >d1qhla_ c.37.1.12 (A:) Cell division protein MukB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Cell division protein MukB species: Escherichia coli [TaxId: 562]
Probab=98.17 E-value=7.8e-08 Score=74.65 Aligned_cols=33 Identities=24% Similarity=0.373 Sum_probs=29.1
Q ss_pred eeeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCC
Q 035832 35 LNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 35 l~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl 68 (245)
+++.+|++.+| +++|+|||||||||+|.+|.-+
T Consensus 15 ~~~~~i~f~~~-~tvi~G~NGsGKStil~Ai~~~ 47 (222)
T d1qhla_ 15 FFARTFDLDEL-VTTLSGGNGAGKSTTMAAFVTA 47 (222)
T ss_dssp EEEEEECHHHH-HHHHHSCCSHHHHHHHHHHHHH
T ss_pred EeeEEEEcCCC-eEEEECCCCCCHHHHHHHHHHH
Confidence 68888999876 9999999999999999999643
|
| >d1znwa1 c.37.1.1 (A:20-201) Guanylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.91 E-value=2.7e-06 Score=66.05 Aligned_cols=27 Identities=22% Similarity=0.239 Sum_probs=24.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCC
Q 035832 45 KSFGLIFGRSGSGKTTLLQLLAGLSKP 71 (245)
Q Consensus 45 Ge~~~liG~nGsGKSTLl~~l~Gl~~p 71 (245)
|.+++|+||||||||||++.|....+.
T Consensus 2 G~iivl~GpsG~GK~tl~~~L~~~~~~ 28 (182)
T d1znwa1 2 GRVVVLSGPSAVGKSTVVRCLRERIPN 28 (182)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSTT
T ss_pred CeEEEEECCCCCCHHHHHHHHHhhCCC
Confidence 889999999999999999999876653
|
| >d1u0la2 c.37.1.8 (A:69-293) Probable GTPase EngC (YjeQ), C-terminal domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Thermotoga maritima [TaxId: 2336]
Probab=97.90 E-value=3.7e-06 Score=67.97 Aligned_cols=35 Identities=23% Similarity=0.278 Sum_probs=26.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEE
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINI 78 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~ 78 (245)
+|+..+++|+||+|||||+|.|.|-..-..|+|.-
T Consensus 94 ~~kt~~~~G~SGVGKSTLiN~L~~~~~~~T~~vs~ 128 (225)
T d1u0la2 94 KGKISTMAGLSGVGKSSLLNAINPGLKLRVSEVSE 128 (225)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHSTTCCCC------
T ss_pred cCCeEEEECCCCCCHHHHHHhhcchhhhhccCccc
Confidence 69999999999999999999999987777788754
|
| >d1np6a_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Escherichia coli [TaxId: 562]
Probab=97.89 E-value=2.8e-06 Score=64.21 Aligned_cols=24 Identities=38% Similarity=0.307 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
+++|+|++|||||||++.|+..++
T Consensus 4 vi~itG~~GSGKTTL~~~L~~~l~ 27 (170)
T d1np6a_ 4 LLAFAAWSGTGKTTLLKKLIPALC 27 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 789999999999999999985443
|
| >d1cr2a_ c.37.1.11 (A:) Gene 4 protein (g4p, DNA primase), helicase domain {Bacteriophage T7 [TaxId: 10760]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Gene 4 protein (g4p, DNA primase), helicase domain species: Bacteriophage T7 [TaxId: 10760]
Probab=97.88 E-value=2.3e-05 Score=64.27 Aligned_cols=34 Identities=21% Similarity=0.247 Sum_probs=28.4
Q ss_pred ceeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHh
Q 035832 33 DILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLA 66 (245)
Q Consensus 33 ~il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~ 66 (245)
+-|+++..=+.+|+++.|.|++|+|||||+.-++
T Consensus 23 ~~lD~~~~G~~~G~l~vi~G~~G~GKT~~~~~la 56 (277)
T d1cr2a_ 23 TGINDKTLGARGGEVIMVTSGSGMGKSTFVRQQA 56 (277)
T ss_dssp TTHHHHHCSBCTTCEEEEECSTTSSHHHHHHHHH
T ss_pred hhHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHH
Confidence 4466665558999999999999999999987776
|
| >d1zp6a1 c.37.1.25 (A:6-181) Hypothetical protein Atu3015 {Agrobacterium tumefaciens [TaxId: 358]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein Atu3015 species: Agrobacterium tumefaciens [TaxId: 358]
Probab=97.83 E-value=4.4e-06 Score=63.44 Aligned_cols=36 Identities=28% Similarity=0.392 Sum_probs=28.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCc
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGY 81 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~ 81 (245)
.|++++|.||+||||||+.+.|+..+.. --+.+++.
T Consensus 3 ~g~iI~l~G~~GsGKSTia~~La~~lg~--~~~~~~~d 38 (176)
T d1zp6a1 3 GGNILLLSGHPGSGKSTIAEALANLPGV--PKVHFHSD 38 (176)
T ss_dssp TTEEEEEEECTTSCHHHHHHHHHTCSSS--CEEEECTT
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhCC--CEEEecHH
Confidence 5899999999999999999999986532 13455553
|
| >d2i3ba1 c.37.1.11 (A:1-189) Cancer-related NTPase, C1orf57 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Cancer-related NTPase, C1orf57 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.77 E-value=1.6e-06 Score=66.08 Aligned_cols=34 Identities=24% Similarity=0.262 Sum_probs=28.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRG 80 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 80 (245)
.+.|+||+|+|||||++.++..+....+.+.+.+
T Consensus 3 ~v~ItG~~GtGKTtl~~~i~~~l~~~~~~v~~~~ 36 (189)
T d2i3ba1 3 HVFLTGPPGVGKTTLIHKASEVLKSSGVPVDGFY 36 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHHHHTTCCCEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 5789999999999999999999877666665543
|
| >d1knqa_ c.37.1.17 (A:) Gluconate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Gluconate kinase domain: Gluconate kinase species: Escherichia coli [TaxId: 562]
Probab=97.77 E-value=5.7e-06 Score=62.63 Aligned_cols=27 Identities=26% Similarity=0.369 Sum_probs=24.2
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
+.+.++.|+||+||||||+.+.|+..+
T Consensus 4 ~~~~iivl~G~~GsGKsT~a~~La~~l 30 (171)
T d1knqa_ 4 HDHHIYVLMGVSGSGKSAVASEVAHQL 30 (171)
T ss_dssp TTSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 568899999999999999999998754
|
| >d1m8pa3 c.37.1.15 (A:391-573) ATP sulfurylase C-terminal domain {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=97.75 E-value=6.8e-06 Score=62.25 Aligned_cols=27 Identities=19% Similarity=0.116 Sum_probs=24.0
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.+|-++.|+|++||||||+.+.|+--+
T Consensus 4 ~~g~~I~l~G~~GsGKTTia~~La~~L 30 (183)
T d1m8pa3 4 TQGFTIFLTGYMNSGKDAIARALQVTL 30 (183)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 478999999999999999999998543
|
| >d1t9ha2 c.37.1.8 (A:68-298) Probable GTPase EngC (YjeQ), C-terminal domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngC (YjeQ), C-terminal domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.71 E-value=3.8e-06 Score=68.14 Aligned_cols=35 Identities=23% Similarity=0.323 Sum_probs=23.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEE
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINI 78 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~ 78 (245)
+|...+++|+||+|||||+|.|.|-..-..|+|.-
T Consensus 96 ~~~~~vl~G~SGVGKSSLiN~L~~~~~~~t~~vs~ 130 (231)
T d1t9ha2 96 QDKTTVFAGQSGVGKSSLLNAISPELGLRTNEISE 130 (231)
T ss_dssp TTSEEEEEESHHHHHHHHHHHHCC-----------
T ss_pred ccceEEEECCCCccHHHHHHhhccHhHhhhccccc
Confidence 68899999999999999999999987777788863
|
| >d1w1wa_ c.37.1.12 (A:) Smc head domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ABC transporter ATPase domain-like domain: Smc head domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.71 E-value=1.1e-05 Score=69.65 Aligned_cols=28 Identities=29% Similarity=0.605 Sum_probs=23.4
Q ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHh
Q 035832 39 SFSLPEKSFGLIFGRSGSGKTTLLQLLA 66 (245)
Q Consensus 39 sl~i~~Ge~~~liG~nGsGKSTLl~~l~ 66 (245)
.+++..+.+.+|+|||||||||+|.+|+
T Consensus 19 ~i~f~~~~l~~i~G~NGsGKS~ileAi~ 46 (427)
T d1w1wa_ 19 KVGFGESNFTSIIGPNGSGKSNMMDAIS 46 (427)
T ss_dssp EEECTTCSEEEEECSTTSSHHHHHHHHH
T ss_pred EEeCCCCCEEEEECCCCCCHHHHHHHHH
Confidence 3445556799999999999999999984
|
| >d1xjca_ c.37.1.10 (A:) Molybdopterin-guanine dinucleotide biosynthesis protein MobB {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Molybdopterin-guanine dinucleotide biosynthesis protein MobB species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.66 E-value=5.1e-06 Score=63.27 Aligned_cols=26 Identities=27% Similarity=0.293 Sum_probs=22.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCCC
Q 035832 46 SFGLIFGRSGSGKTTLLQLLAGLSKP 71 (245)
Q Consensus 46 e~~~liG~nGsGKSTLl~~l~Gl~~p 71 (245)
.+++|+|++|||||||++-|...++.
T Consensus 2 kii~I~G~~gSGKTTli~~l~~~L~~ 27 (165)
T d1xjca_ 2 NVWQVVGYKHSGKTTLMEKWVAAAVR 27 (165)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHh
Confidence 47899999999999999888766554
|
| >d1s96a_ c.37.1.1 (A:) Guanylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Escherichia coli [TaxId: 562]
Probab=97.64 E-value=1.4e-05 Score=63.59 Aligned_cols=27 Identities=26% Similarity=0.418 Sum_probs=23.5
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
+|.++.|+||||||||||.+.|.-..+
T Consensus 1 ~G~livi~GPSG~GK~tl~~~L~~~~p 27 (205)
T d1s96a_ 1 QGTLYIVSAPSGAGKSSLIQALLKTQP 27 (205)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHhhCC
Confidence 589999999999999999998876543
|
| >d1lw7a2 c.37.1.1 (A:220-411) Transcriptional regulator NadR, ribosylnicotinamide kinase domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Transcriptional regulator NadR, ribosylnicotinamide kinase domain species: Haemophilus influenzae [TaxId: 727]
Probab=97.62 E-value=1.2e-05 Score=61.08 Aligned_cols=24 Identities=33% Similarity=0.410 Sum_probs=21.4
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Q 035832 46 SFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 46 e~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
..++|+||.|||||||.+.|+-.+
T Consensus 8 K~I~i~G~~GsGKTTla~~La~~~ 31 (192)
T d1lw7a2 8 KTVAILGGESSGKSVLVNKLAAVF 31 (192)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHh
Confidence 358899999999999999998765
|
| >d1qhxa_ c.37.1.3 (A:) Chloramphenicol phosphotransferase {Streptomyces venezuelae [TaxId: 54571]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Chloramphenicol phosphotransferase domain: Chloramphenicol phosphotransferase species: Streptomyces venezuelae [TaxId: 54571]
Probab=97.60 E-value=1.7e-05 Score=59.89 Aligned_cols=26 Identities=19% Similarity=0.346 Sum_probs=23.7
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Q 035832 45 KSFGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 45 Ge~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
..++.|.|++||||||+.+.|+..+.
T Consensus 3 ~kiI~l~G~~GsGKsTva~~L~~~l~ 28 (178)
T d1qhxa_ 3 TRMIILNGGSSAGKSGIVRCLQSVLP 28 (178)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHSS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHcC
Confidence 56899999999999999999999874
|
| >d1y63a_ c.37.1.1 (A:) Probable kinase LmjF30.1890 {Leishmania major [TaxId: 5664]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Probable kinase LmjF30.1890 species: Leishmania major [TaxId: 5664]
Probab=97.56 E-value=2e-05 Score=59.61 Aligned_cols=27 Identities=33% Similarity=0.491 Sum_probs=23.5
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
++|-.++|.||+||||||+.+.|+--+
T Consensus 3 pk~~~I~i~G~~GsGKTT~~~~La~~l 29 (174)
T d1y63a_ 3 PKGINILITGTPGTGKTSMAEMIAAEL 29 (174)
T ss_dssp CSSCEEEEECSTTSSHHHHHHHHHHHS
T ss_pred CCCCEEEEEeCCCCCHHHHHHHHHHHh
Confidence 456779999999999999999998654
|
| >d1kaga_ c.37.1.2 (A:) Shikimate kinase (AroK) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Escherichia coli [TaxId: 562]
Probab=97.54 E-value=1.8e-05 Score=58.64 Aligned_cols=23 Identities=30% Similarity=0.336 Sum_probs=20.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.+.|+||+||||||+.+.|+-.+
T Consensus 4 ~I~l~G~~GsGKSTvak~La~~L 26 (169)
T d1kaga_ 4 NIFLVGPMGAGKSTIGRQLAQQL 26 (169)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHh
Confidence 46788999999999999998654
|
| >d1ly1a_ c.37.1.1 (A:) Polynucleotide kinase, kinase domain {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Polynucleotide kinase, kinase domain species: Bacteriophage T4 [TaxId: 10665]
Probab=97.54 E-value=1.9e-05 Score=58.58 Aligned_cols=33 Identities=30% Similarity=0.336 Sum_probs=24.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCc
Q 035832 46 SFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGY 81 (245)
Q Consensus 46 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~ 81 (245)
+++.|.||+|||||||.+.|..- ..|.+.++..
T Consensus 3 klIii~G~pGsGKTTla~~L~~~---~~~~~~~~~d 35 (152)
T d1ly1a_ 3 KIILTIGCPGSGKSTWAREFIAK---NPGFYNINRD 35 (152)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHH---STTEEEECHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHh---CCCCEEechH
Confidence 47889999999999999977432 2355655443
|
| >d1nlfa_ c.37.1.11 (A:) Hexameric replicative helicase repA {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric replicative helicase repA species: Escherichia coli [TaxId: 562]
Probab=97.54 E-value=0.00073 Score=54.67 Aligned_cols=46 Identities=15% Similarity=0.169 Sum_probs=32.8
Q ss_pred HHHhhCCCEEEEeCCCC-----CCCHHHHHHHHHHHHHhhc--CceEEEEecC
Q 035832 173 IQLVQVPDLLILDEPLA-----GLDWKARADVVKLLKHLKK--ELTILVVSHD 218 (245)
Q Consensus 173 ral~~~p~llllDEPts-----~LD~~~~~~i~~~l~~l~~--~~tiii~tHd 218 (245)
.....+|+++++|--++ -=|......++..|+.+.+ +++||++.|-
T Consensus 127 ~~~~~~~~lvviD~l~~~~~~~~~~~~~~~~~~~~l~~la~~~~~~vi~v~H~ 179 (274)
T d1nlfa_ 127 KRAAEGRRLMVLDTLRRFHIEEENASGPMAQVIGRMEAIAADTGCSIVFLHHA 179 (274)
T ss_dssp HHHHTTCSEEEEECGGGGCCSCTTCHHHHHHHHHHHHHHHHHHCCEEEEEEEC
T ss_pred HHhccCccEEecCchhhhccccccchhhHHHHHHHHHHHhhcCCCceehhhhc
Confidence 34467999999995432 1266667777878877753 6899999984
|
| >d1rz3a_ c.37.1.6 (A:) Hypothetical protein rbstp0775 {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein rbstp0775 species: Bacillus stearothermophilus [TaxId: 1422]
Probab=97.53 E-value=1.8e-05 Score=60.91 Aligned_cols=23 Identities=43% Similarity=0.234 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
++||.||+|||||||.+.|.-.+
T Consensus 24 iIgI~G~~GSGKSTla~~L~~~l 46 (198)
T d1rz3a_ 24 VLGIDGLSRSGKTTLANQLSQTL 46 (198)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999998554
|
| >d1khta_ c.37.1.1 (A:) Adenylate kinase {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=97.51 E-value=2.6e-05 Score=59.27 Aligned_cols=26 Identities=27% Similarity=0.271 Sum_probs=22.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Q 035832 45 KSFGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 45 Ge~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
+.+++|.|+.||||||+.+.|+-.+.
T Consensus 1 ~kiI~i~G~~GsGKsT~~~~L~~~l~ 26 (190)
T d1khta_ 1 NKVVVVTGVPGVGSTTSSQLAMDNLR 26 (190)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHHH
Confidence 36899999999999999999976543
|
| >d1x6va3 c.37.1.4 (A:34-228) Adenosine-5'phosphosulfate kinase (APS kinase) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.50 E-value=1.5e-05 Score=61.42 Aligned_cols=26 Identities=31% Similarity=0.277 Sum_probs=23.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
+|-++.|+|++||||||+.+.|+-.+
T Consensus 18 ~g~vI~L~G~pGSGKTTiAk~La~~l 43 (195)
T d1x6va3 18 RGCTVWLTGLSGAGKTTVSMALEEYL 43 (195)
T ss_dssp CCEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 57799999999999999999998644
|
| >d1j8yf2 c.37.1.10 (F:87-297) GTPase domain of the signal sequence recognition protein Ffh {Archaeon Acidianus ambivalens [TaxId: 2283]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Archaeon Acidianus ambivalens [TaxId: 2283]
Probab=97.48 E-value=0.00044 Score=54.87 Aligned_cols=96 Identities=24% Similarity=0.167 Sum_probs=52.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGW 123 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~ 123 (245)
...+++++||+|+||||.+==|+-.++ . ..++|+++-=|... .
T Consensus 11 ~p~vi~lvGptGvGKTTTiAKLA~~~~-~----------------------~g~kV~lit~Dt~R----~---------- 53 (211)
T d1j8yf2 11 IPYVIMLVGVQGTGKATTAGKLAYFYK-K----------------------KGFKVGLVGADVYR----P---------- 53 (211)
T ss_dssp SSEEEEEECSCCC----HHHHHHHHHH-H----------------------TTCCEEEEECCCSS----H----------
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHHH-H----------------------CCCceEEEEeeccc----c----------
Confidence 456799999999999988655553221 0 02458888766410 0
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCC
Q 035832 124 PRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLD 192 (245)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD 192 (245)
...+.++.+.+.+|+.-. .-..+.++..-.+ =++..+...+-+++|.| |+|..
T Consensus 54 -----------ga~eQL~~~a~~l~v~~~-~~~~~~~~~~~~~--~a~~~~~~~~~d~IlID--TaGr~ 106 (211)
T d1j8yf2 54 -----------AALEQLQQLGQQIGVPVY-GEPGEKDVVGIAK--RGVEKFLSEKMEIIIVD--TAGRH 106 (211)
T ss_dssp -----------HHHHHHHHHHHHHTCCEE-CCTTCCCHHHHHH--HHHHHHHHTTCSEEEEE--CCCSC
T ss_pred -----------chhHHHHHhccccCccee-ecccchhhhHHHH--HHHHHhhccCCceEEEe--cCCcC
Confidence 012234455566677532 2333334432222 25666677889999999 88764
|
| >d1rkba_ c.37.1.1 (A:) Adenylate kinase {Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Human (Homo sapiens), isoenzyme 6 [TaxId: 9606]
Probab=97.47 E-value=2.5e-05 Score=58.79 Aligned_cols=21 Identities=48% Similarity=0.482 Sum_probs=18.6
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl 68 (245)
++|+||+||||||+.+.|+--
T Consensus 7 I~i~G~pGsGKTTia~~La~~ 27 (173)
T d1rkba_ 7 ILLTGTPGVGKTTLGKELASK 27 (173)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999743
|
| >d2bdta1 c.37.1.25 (A:1-176) Hypothetical protein BH3686 {Bacillus halodurans [TaxId: 86665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Atu3015-like domain: Hypothetical protein BH3686 species: Bacillus halodurans [TaxId: 86665]
Probab=97.46 E-value=2.8e-05 Score=58.26 Aligned_cols=34 Identities=32% Similarity=0.344 Sum_probs=26.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCcc
Q 035832 46 SFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYN 82 (245)
Q Consensus 46 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~ 82 (245)
.++.|.||+||||||+.+.|+..+. +.+.+++..
T Consensus 3 klI~i~G~~GsGKTTva~~L~~~~~---~~~~~~~d~ 36 (176)
T d2bdta1 3 KLYIITGPAGVGKSTTCKRLAAQLD---NSAYIEGDI 36 (176)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSS---SEEEEEHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcC---CCEEEehHH
Confidence 4688999999999999999997653 455555543
|
| >d2qy9a2 c.37.1.10 (A:285-495) GTPase domain of the signal recognition particle receptor FtsY {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Escherichia coli [TaxId: 562]
Probab=97.44 E-value=0.00051 Score=54.49 Aligned_cols=109 Identities=19% Similarity=0.092 Sum_probs=59.3
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhcCC
Q 035832 45 KSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFGWP 124 (245)
Q Consensus 45 Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~~~ 124 (245)
-.+++++||+|+||||.+-=|+-.+. .. .++|+++--|...
T Consensus 9 p~vi~lvGptGvGKTTTiAKLA~~~~-~~----------------------g~kV~lit~Dt~R---------------- 49 (211)
T d2qy9a2 9 PFVILMVGVNGVGKTTTIGKLARQFE-QQ----------------------GKSVMLAAGDTFR---------------- 49 (211)
T ss_dssp TEEEEEECCTTSCHHHHHHHHHHHHH-TT----------------------TCCEEEECCCTTC----------------
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHHH-HC----------------------CCcEEEEeccccc----------------
Confidence 35899999999999987754553332 11 2357777655310
Q ss_pred CCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCC---CHHHHHHHHH
Q 035832 125 RQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGL---DWKARADVVK 201 (245)
Q Consensus 125 ~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~L---D~~~~~~i~~ 201 (245)
....++++.+.+.+|++-. ....+.++..=-++ .+..|-..+-+++|.| |+|- |....+++.+
T Consensus 50 ---------~gA~eQL~~~a~~l~v~~~-~~~~~~d~~~~l~~--~~~~a~~~~~d~ilID--TaGr~~~d~~~~~el~~ 115 (211)
T d2qy9a2 50 ---------AAAVEQLQVWGQRNNIPVI-AQHTGADSASVIFD--AIQAAKARNIDVLIAD--TAGRLQNKSHLMEELKK 115 (211)
T ss_dssp ---------HHHHHHHHHHHHHTTCCEE-CCSTTCCHHHHHHH--HHHHHHHTTCSEEEEC--CCCCGGGHHHHHHHHHH
T ss_pred ---------ccchhhhhhhhhhcCCccc-ccccCCCHHHHHHH--HHHHHHHcCCCEEEec--cCCCccccHHHHHHHHH
Confidence 0112345556667777632 33334443221111 1122335678999999 7774 4444455555
Q ss_pred HHHHh
Q 035832 202 LLKHL 206 (245)
Q Consensus 202 ~l~~l 206 (245)
+.+..
T Consensus 116 l~~~~ 120 (211)
T d2qy9a2 116 IVRVM 120 (211)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44443
|
| >d1yj5a2 c.37.1.1 (A:351-522) 5' polynucleotide kinase-3' phosphatase, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: 5' polynucleotide kinase-3' phosphatase, C-terminal domain species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.43 E-value=0.00071 Score=51.60 Aligned_cols=24 Identities=29% Similarity=0.458 Sum_probs=21.1
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHh
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLA 66 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~ 66 (245)
++-+++.++|++||||||+.+-++
T Consensus 12 ~~p~liil~G~pGsGKST~a~~l~ 35 (172)
T d1yj5a2 12 PNPEVVVAVGFPGAGKSTFIQEHL 35 (172)
T ss_dssp SSCCEEEEECCTTSSHHHHHHHHT
T ss_pred CCCEEEEEECCCCCCHHHHHHHHH
Confidence 456799999999999999999874
|
| >d1svia_ c.37.1.8 (A:) Probable GTPase EngB {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Bacillus subtilis [TaxId: 1423]
Probab=97.35 E-value=3.9e-05 Score=59.58 Aligned_cols=23 Identities=26% Similarity=0.313 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|+.|||||||++.|+|.-
T Consensus 25 ~I~lvG~~n~GKSTLin~L~g~~ 47 (195)
T d1svia_ 25 EIALAGRSNVGKSSFINSLINRK 47 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTC-
T ss_pred EEEEECCCCCCHHHHHHHhcCCC
Confidence 39999999999999999999864
|
| >d1gkya_ c.37.1.1 (A:) Guanylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.33 E-value=4.7e-05 Score=59.08 Aligned_cols=22 Identities=45% Similarity=0.504 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
++|+||||||||||++.|+.-.
T Consensus 4 Ivl~GpsG~GK~tl~~~L~~~~ 25 (186)
T d1gkya_ 4 IVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp EEEECCTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6799999999999999987654
|
| >d1uj2a_ c.37.1.6 (A:) Uridine-cytidine kinase 2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Uridine-cytidine kinase 2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.31 E-value=5.2e-05 Score=59.72 Aligned_cols=23 Identities=22% Similarity=0.260 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
++||.|++|||||||.+.|+-.+
T Consensus 4 iIgI~G~~gSGKSTla~~L~~~l 26 (213)
T d1uj2a_ 4 LIGVSGGTASGKSSVCAKIVQLL 26 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 68999999999999999997654
|
| >d1yrba1 c.37.1.10 (A:1-244) ATP(GTP)-binding protein PAB0955 {Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: ATP(GTP)-binding protein PAB0955 species: Pyrococcus abyssi [TaxId: 29292]
Probab=97.29 E-value=5.5e-05 Score=60.21 Aligned_cols=21 Identities=38% Similarity=0.510 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~G 67 (245)
+++|+|+.|||||||++.|..
T Consensus 2 vi~v~G~~GsGKTTLl~~ll~ 22 (244)
T d1yrba1 2 IVVFVGTAGSGKTTLTGEFGR 22 (244)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEEcCCCCcHHHHHHHHHH
Confidence 689999999999999999964
|
| >d1mkya2 c.37.1.8 (A:173-358) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=97.29 E-value=9.6e-05 Score=56.60 Aligned_cols=23 Identities=30% Similarity=0.390 Sum_probs=20.5
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.+||+|+.|+|||||++.|+|-.
T Consensus 10 kV~iiG~~~~GKSTLin~l~~~~ 32 (186)
T d1mkya2 10 KVAIVGRPNVGKSTLFNAILNKE 32 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHTST
T ss_pred EEEEECCCCCCHHHHHHHHHCCC
Confidence 37999999999999999998753
|
| >d1kgda_ c.37.1.1 (A:) Guanylate kinase-like domain of Cask {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase-like domain of Cask species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.28 E-value=6.9e-05 Score=57.91 Aligned_cols=24 Identities=17% Similarity=0.282 Sum_probs=20.8
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Q 035832 46 SFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 46 e~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
..+.|+||||||||||++.|....
T Consensus 4 k~ivl~Gpsg~GK~tl~~~L~~~~ 27 (178)
T d1kgda_ 4 KTLVLLGAHGVGRRHIKNTLITKH 27 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CcEEEECCCCCCHHHHHHHHHHhC
Confidence 578999999999999999887543
|
| >d1qf9a_ c.37.1.1 (A:) UMP/CMP kinase {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Dictyostelium discoideum [TaxId: 44689]
Probab=97.25 E-value=6.5e-05 Score=58.18 Aligned_cols=25 Identities=24% Similarity=0.308 Sum_probs=21.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl 68 (245)
+..+++|+||.||||||+.+.|+--
T Consensus 5 kp~iI~i~G~pGSGKsT~a~~La~~ 29 (194)
T d1qf9a_ 5 KPNVVFVLGGPGSGKGTQCANIVRD 29 (194)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 4468999999999999999999853
|
| >d1mkya1 c.37.1.8 (A:2-172) Probable GTPase Der, N-terminal and middle domains {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase Der, N-terminal and middle domains species: Thermotoga maritima [TaxId: 2336]
Probab=97.25 E-value=7.6e-05 Score=56.57 Aligned_cols=23 Identities=39% Similarity=0.481 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|+.|||||||++.|+|-.
T Consensus 2 ~V~liG~~n~GKSsLi~~L~~~~ 24 (171)
T d1mkya1 2 TVLIVGRPNVGKSTLFNKLVKKK 24 (171)
T ss_dssp EEEEECCTTSSHHHHHHHHHC--
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 57999999999999999999854
|
| >d1lvga_ c.37.1.1 (A:) Guanylate kinase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Guanylate kinase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.24 E-value=6.7e-05 Score=58.44 Aligned_cols=22 Identities=41% Similarity=0.501 Sum_probs=19.0
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
++|+||||||||||.+.|+-..
T Consensus 3 Ivl~GPsGsGK~tl~~~L~~~~ 24 (190)
T d1lvga_ 3 VVLSGPSGAGKSTLLKKLFQEH 24 (190)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhC
Confidence 6799999999999999986543
|
| >d2cxxa1 c.37.1.8 (A:2-185) GTP-binding protein engB {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein engB species: Pyrococcus horikoshii [TaxId: 53953]
Probab=97.23 E-value=5.9e-05 Score=57.61 Aligned_cols=22 Identities=41% Similarity=0.508 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
-++|+|+.|+|||||++.|.|-
T Consensus 2 ~I~lvG~~nvGKSsLin~l~~~ 23 (184)
T d2cxxa1 2 TIIFAGRSNVGKSTLIYRLTGK 23 (184)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 3789999999999999999985
|
| >d1lnza2 c.37.1.8 (A:158-342) Obg GTP-binding protein middle domain {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Bacillus subtilis [TaxId: 1423]
Probab=97.23 E-value=4.4e-05 Score=58.71 Aligned_cols=21 Identities=29% Similarity=0.387 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl 68 (245)
+||+|+.++|||||++.|+|-
T Consensus 4 VaiiG~~nvGKSSLin~L~~~ 24 (185)
T d1lnza2 4 VGLVGFPSVGKSTLLSVVSSA 24 (185)
T ss_dssp EEEESSTTSSHHHHHHHSEEE
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999874
|
| >d1egaa1 c.37.1.8 (A:4-182) GTPase Era, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=97.21 E-value=8.3e-05 Score=56.47 Aligned_cols=22 Identities=50% Similarity=0.678 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
+++|+|..|+|||||+|.|+|-
T Consensus 7 ~I~iiG~~nvGKSSLin~L~~~ 28 (179)
T d1egaa1 7 FIAIVGRPNVGKSTLLNKLLGQ 28 (179)
T ss_dssp EEEEECSSSSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 4789999999999999999984
|
| >d1f6ba_ c.37.1.8 (A:) SAR1 {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=97.20 E-value=6e-05 Score=57.09 Aligned_cols=23 Identities=35% Similarity=0.433 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|++|||||||++.+.+-.
T Consensus 15 kI~lvG~~~vGKTsLl~~l~~~~ 37 (186)
T d1f6ba_ 15 KLVFLGLDNAGKTTLLHMLKDDR 37 (186)
T ss_dssp EEEEEEETTSSHHHHHHHHSCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999998865
|
| >d1n0wa_ c.37.1.11 (A:) DNA repair protein Rad51, catalytic domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.20 E-value=0.00011 Score=56.57 Aligned_cols=26 Identities=31% Similarity=0.401 Sum_probs=23.6
Q ss_pred EcCCCEEEEECCCCCcHHHHHHHHhC
Q 035832 42 LPEKSFGLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 42 i~~Ge~~~liG~nGsGKSTLl~~l~G 67 (245)
+.+|+++.|.||+|||||||+..++.
T Consensus 20 i~~G~v~~i~G~~GsGKT~l~l~la~ 45 (242)
T d1n0wa_ 20 IETGSITEMFGEFRTGKTQICHTLAV 45 (242)
T ss_dssp EETTSEEEEECCTTSSHHHHHHHHHH
T ss_pred CcCCEEEEEEeCCCCCHHHHHHHHHH
Confidence 68999999999999999999877764
|
| >d1wf3a1 c.37.1.8 (A:3-180) GTPase Era, N-terminal domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Era, N-terminal domain species: Thermus thermophilus [TaxId: 274]
Probab=97.19 E-value=9.2e-05 Score=56.53 Aligned_cols=23 Identities=43% Similarity=0.674 Sum_probs=21.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
+++|+|+.|+|||||++.|+|-.
T Consensus 7 ~I~lvG~~~~GKSSLin~l~~~~ 29 (178)
T d1wf3a1 7 FVAIVGKPNVGKSTLLNNLLGVK 29 (178)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 68999999999999999999863
|
| >d1viaa_ c.37.1.2 (A:) Shikimate kinase (AroK) {Campylobacter jejuni [TaxId: 197]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Campylobacter jejuni [TaxId: 197]
Probab=97.18 E-value=8.7e-05 Score=56.11 Aligned_cols=22 Identities=41% Similarity=0.398 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
+.|+|++||||||+.+.|+-.+
T Consensus 3 I~liG~~GsGKsTi~k~La~~l 24 (161)
T d1viaa_ 3 IVFIGFMGSGKSTLARALAKDL 24 (161)
T ss_dssp EEEECCTTSCHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 6788999999999999998654
|
| >d3adka_ c.37.1.1 (A:) Adenylate kinase {Pig (Sus scrofa) [TaxId: 9823]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Pig (Sus scrofa) [TaxId: 9823]
Probab=97.17 E-value=7.8e-05 Score=57.89 Aligned_cols=28 Identities=25% Similarity=0.322 Sum_probs=24.4
Q ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 42 LPEKSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 42 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
++++.++.|+||.||||||+.+.|+--+
T Consensus 5 ~~~~~iI~l~G~pGSGKsT~a~~La~~~ 32 (194)
T d3adka_ 5 LKKSKIIFVVGGPGSGKGTQCEKIVQKY 32 (194)
T ss_dssp HHTSCEEEEEECTTSSHHHHHHHHHHHT
T ss_pred ccCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 4578899999999999999999998643
|
| >d1udxa2 c.37.1.8 (A:157-336) Obg GTP-binding protein middle domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Obg GTP-binding protein middle domain species: Thermus thermophilus [TaxId: 274]
Probab=97.15 E-value=7e-05 Score=57.28 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=20.4
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
+||+|+.++|||||++.|+|..
T Consensus 4 VaivG~~nvGKSTLin~L~~~~ 25 (180)
T d1udxa2 4 VGLVGYPNAGKSSLLAAMTRAH 25 (180)
T ss_dssp EEEECCGGGCHHHHHHHHCSSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 7999999999999999999864
|
| >d1e6ca_ c.37.1.2 (A:) Shikimate kinase (AroK) {Erwinia chrysanthemi [TaxId: 556]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Erwinia chrysanthemi [TaxId: 556]
Probab=97.15 E-value=9.2e-05 Score=56.27 Aligned_cols=22 Identities=32% Similarity=0.294 Sum_probs=19.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.+.|+|++||||||+.+.|+-.
T Consensus 4 ~Iil~G~~GsGKSTia~~LA~~ 25 (170)
T d1e6ca_ 4 PIFMVGARGCGMTTVGRELARA 25 (170)
T ss_dssp CEEEESCTTSSHHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHHH
Confidence 4668999999999999999743
|
| >d1ukza_ c.37.1.1 (A:) Uridylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Uridylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.15 E-value=0.00011 Score=57.06 Aligned_cols=32 Identities=22% Similarity=0.292 Sum_probs=25.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEc
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIR 79 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~ 79 (245)
+-.+++|+||.||||||+.+.|+--+ |-+.++
T Consensus 7 ~~~iI~i~GppGSGKsT~a~~La~~~----g~~~is 38 (196)
T d1ukza_ 7 QVSVIFVLGGPGAGKGTQCEKLVKDY----SFVHLS 38 (196)
T ss_dssp TCEEEEEECSTTSSHHHHHHHHHHHS----SCEEEE
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHh----CCeEEe
Confidence 45579999999999999999998755 445554
|
| >d1g6oa_ c.37.1.11 (A:) Hexameric traffic ATPase, HP0525 {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Hexameric traffic ATPase, HP0525 species: Helicobacter pylori [TaxId: 210]
Probab=97.12 E-value=9e-05 Score=62.80 Aligned_cols=36 Identities=25% Similarity=0.323 Sum_probs=29.2
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEE
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINI 78 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~ 78 (245)
+.+.-+.|.||.|||||||+++|++.++|..=-|++
T Consensus 164 ~~~~nili~G~tgSGKTT~l~al~~~i~~~~rivti 199 (323)
T d1g6oa_ 164 AIGKNVIVCGGTGSGKTTYIKSIMEFIPKEERIISI 199 (323)
T ss_dssp HHTCCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEE
T ss_pred HhCCCEEEEeeccccchHHHHHHhhhcccccceeec
Confidence 334558999999999999999999999876555555
|
| >d2qtvb1 c.37.1.8 (B:24-189) SAR1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: SAR1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.12 E-value=8.6e-05 Score=54.82 Aligned_cols=22 Identities=41% Similarity=0.540 Sum_probs=19.5
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
++|+|++|+|||||++.+.+-.
T Consensus 3 I~liG~~nvGKSSLln~l~~~~ 24 (166)
T d2qtvb1 3 LLFLGLDNAGKTTLLHMLKNDR 24 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHHSC
T ss_pred EEEECCCCCCHHHHHHHHhCCC
Confidence 5699999999999999999753
|
| >d1nksa_ c.37.1.1 (A:) Adenylate kinase {Archaeon Sulfolobus acidocaldarius [TaxId: 2285]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Archaeon Sulfolobus acidocaldarius [TaxId: 2285]
Probab=97.10 E-value=0.0001 Score=55.98 Aligned_cols=24 Identities=29% Similarity=0.565 Sum_probs=21.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
++.|.|++||||||+.+.|+..+.
T Consensus 3 iivi~G~~GsGKTT~~~~La~~L~ 26 (194)
T d1nksa_ 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 678899999999999999987653
|
| >d1nrjb_ c.37.1.8 (B:) Signal recognition particle receptor beta-subunit {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=97.09 E-value=9.9e-05 Score=57.39 Aligned_cols=22 Identities=45% Similarity=0.471 Sum_probs=20.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.++|+|+.|||||||++.|+|-
T Consensus 5 ~V~lvG~~n~GKTSLln~l~~~ 26 (209)
T d1nrjb_ 5 SIIIAGPQNSGKTSLLTLLTTD 26 (209)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999875
|
| >d1r8sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF1 [TaxId: 9606]
Probab=97.07 E-value=0.0001 Score=54.45 Aligned_cols=22 Identities=36% Similarity=0.326 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
++|+|+.|||||||++.+++-.
T Consensus 3 ivlvG~~~vGKSsLi~~l~~~~ 24 (160)
T d1r8sa_ 3 ILMVGLDAAGKTTILYKLKLGE 24 (160)
T ss_dssp EEEECSTTSSHHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 6799999999999999987543
|
| >d1upta_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARL1 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL1 [TaxId: 9606]
Probab=97.06 E-value=0.0001 Score=54.76 Aligned_cols=40 Identities=8% Similarity=0.036 Sum_probs=28.5
Q ss_pred HHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHh
Q 035832 165 YKRRLALAIQLVQVPDLLILDEPLAGLDWKARADVVKLLKHL 206 (245)
Q Consensus 165 qkqrv~iAral~~~p~llllDEPts~LD~~~~~~i~~~l~~l 206 (245)
+.-.-.++..++.+...-++ |+|+.+-.+..++++.|.+.
T Consensus 125 ~~i~~~~~~~~~~~~~~~~~--~~SA~~g~gv~e~~~~l~~~ 164 (169)
T d1upta_ 125 SEMANSLGLPALKDRKWQIF--KTSATKGTGLDEAMEWLVET 164 (169)
T ss_dssp HHHHHHHTGGGCTTSCEEEE--ECCTTTCTTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCCEEE--EEeCCCCCCHHHHHHHHHHH
Confidence 33444555666666666666 89999999999988877553
|
| >d1ls1a2 c.37.1.10 (A:89-295) GTPase domain of the signal sequence recognition protein Ffh {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal sequence recognition protein Ffh species: Thermus aquaticus [TaxId: 271]
Probab=97.05 E-value=0.0041 Score=48.83 Aligned_cols=25 Identities=36% Similarity=0.462 Sum_probs=19.9
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl 68 (245)
...++.++||+|+||||.+-=|+-.
T Consensus 9 ~~~vi~lvGp~GvGKTTTiaKLA~~ 33 (207)
T d1ls1a2 9 DRNLWFLVGLQGSGKTTTAAKLALY 33 (207)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHH
Confidence 3568899999999999887666643
|
| >d1zaka1 c.37.1.1 (A:3-127,A:159-222) Adenylate kinase {Maize (Zea mays) [TaxId: 4577]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Maize (Zea mays) [TaxId: 4577]
Probab=97.04 E-value=0.00011 Score=56.65 Aligned_cols=22 Identities=32% Similarity=0.297 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.++|+||.||||||+.+.|+--
T Consensus 5 ~I~i~GppGsGKsT~a~~La~~ 26 (189)
T d1zaka1 5 KVMISGAPASGKGTQCELIKTK 26 (189)
T ss_dssp CEEEEESTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 3679999999999999999743
|
| >d2iyva1 c.37.1.2 (A:2-166) Shikimate kinase (AroK) {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Shikimate kinase (AroK) domain: Shikimate kinase (AroK) species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.03 E-value=0.00014 Score=54.86 Aligned_cols=22 Identities=36% Similarity=0.490 Sum_probs=18.9
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
+.|+|+.||||||+.+.|+-.+
T Consensus 4 IvliG~~G~GKSTig~~La~~l 25 (165)
T d2iyva1 4 AVLVGLPGSGKSTIGRRLAKAL 25 (165)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 5678999999999999998554
|
| >d1teva_ c.37.1.1 (A:) UMP/CMP kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: UMP/CMP kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.03 E-value=0.00016 Score=55.84 Aligned_cols=22 Identities=23% Similarity=0.354 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
+++|+||.||||||..+.|+--
T Consensus 3 iI~i~GppGSGKsT~a~~La~~ 24 (194)
T d1teva_ 3 VVFVLGGPGAGKGTQCARIVEK 24 (194)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHH
Confidence 5789999999999999999753
|
| >d1bifa1 c.37.1.7 (A:37-249) 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain domain: 6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.99 E-value=0.00017 Score=55.85 Aligned_cols=23 Identities=22% Similarity=0.277 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
+++++|.+|||||||.+.|+..+
T Consensus 4 li~l~GlpgsGKSTla~~L~~~l 26 (213)
T d1bifa1 4 LIVMVGLPARGKTYISKKLTRYL 26 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 68899999999999999998543
|
| >d1zina1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus stearothermophilus [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus stearothermophilus [TaxId: 1422]
Probab=96.99 E-value=0.00018 Score=54.72 Aligned_cols=21 Identities=24% Similarity=0.390 Sum_probs=18.6
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl 68 (245)
+.|+||.||||||+.+.|+--
T Consensus 3 I~i~G~pGSGKsT~a~~La~~ 23 (182)
T d1zina1 3 LVLMGLPGAGKGTQAEKIVAA 23 (182)
T ss_dssp EEEECSTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999543
|
| >d2gj8a1 c.37.1.8 (A:216-376) Probable tRNA modification GTPase TrmE (MnmE), G domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable tRNA modification GTPase TrmE (MnmE), G domain species: Escherichia coli [TaxId: 562]
Probab=96.99 E-value=0.00017 Score=53.70 Aligned_cols=23 Identities=43% Similarity=0.601 Sum_probs=20.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
-++|+|+.|+|||||++.|+|.-
T Consensus 3 kI~lvG~~nvGKSsLin~l~~~~ 25 (161)
T d2gj8a1 3 KVVIAGRPNAGKSSLLNALAGRE 25 (161)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 47899999999999999999853
|
| >d1ak2a1 c.37.1.1 (A:14-146,A:177-233) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-2 [TaxId: 9913]
Probab=96.98 E-value=0.00022 Score=54.92 Aligned_cols=24 Identities=33% Similarity=0.513 Sum_probs=21.4
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHh
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLA 66 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~ 66 (245)
++|=.++|+||.||||||+.+.|+
T Consensus 1 p~~~riil~G~pGSGKsT~a~~La 24 (190)
T d1ak2a1 1 PKGVRAVLLGPPGAGKGTQAPKLA 24 (190)
T ss_dssp CCCCEEEEECCTTSSHHHHHHHHH
T ss_pred CCccEEEEECCCCCCHHHHHHHHH
Confidence 356678899999999999999999
|
| >d1uf9a_ c.37.1.1 (A:) Dephospho-CoA kinase {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Thermus thermophilus [TaxId: 274]
Probab=96.96 E-value=0.00017 Score=55.57 Aligned_cols=21 Identities=43% Similarity=0.474 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~G 67 (245)
++||.|+.||||||+.+.|.-
T Consensus 5 IIgitG~~gSGKstva~~l~~ 25 (191)
T d1uf9a_ 5 IIGITGNIGSGKSTVAALLRS 25 (191)
T ss_dssp EEEEEECTTSCHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999863
|
| >d1ksha_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL2 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL2 [TaxId: 10090]
Probab=96.95 E-value=0.00026 Score=52.98 Aligned_cols=23 Identities=35% Similarity=0.520 Sum_probs=20.5
Q ss_pred EEEECCCCCcHHHHHHHHhCCCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
++|+|+.|||||||++.+.+-..
T Consensus 5 i~ivG~~~~GKTsLi~~l~~~~~ 27 (165)
T d1ksha_ 5 LLMLGLDNAGKTTILKKFNGEDV 27 (165)
T ss_dssp EEEECSTTSSHHHHHHHHTTCCC
T ss_pred EEEECCCCCCHHHHHHHHcCCCC
Confidence 67999999999999999988643
|
| >d1puia_ c.37.1.8 (A:) Probable GTPase EngB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase EngB species: Escherichia coli [TaxId: 562]
Probab=96.94 E-value=9.9e-05 Score=56.00 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|+.++|||||+|.|.|..
T Consensus 18 ~I~lvG~~NvGKSSL~n~L~~~~ 40 (188)
T d1puia_ 18 EVAFAGRSNAGKSSALNTLTNQK 40 (188)
T ss_dssp EEEEEECTTSSHHHHHTTTCCC-
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 38999999999999999998864
|
| >d1gvnb_ c.37.1.21 (B:) Plasmid maintenance system epsilon/zeta, toxin zeta subunit {Streptococcus pyogenes [TaxId: 1314]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Plasmid maintenance system epsilon/zeta, toxin zeta subunit domain: Plasmid maintenance system epsilon/zeta, toxin zeta subunit species: Streptococcus pyogenes [TaxId: 1314]
Probab=96.93 E-value=0.00015 Score=58.45 Aligned_cols=35 Identities=29% Similarity=0.294 Sum_probs=26.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRG 80 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g 80 (245)
....+.|.||.|||||||.+.|++.+.. +-+.++.
T Consensus 31 ~P~~ilL~GpPGtGKT~la~~la~~~~~--~~~~i~~ 65 (273)
T d1gvnb_ 31 SPTAFLLGGQPGSGKTSLRSAIFEETQG--NVIVIDN 65 (273)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHTTT--CCEEECT
T ss_pred CCEEEEEECCCCCCHHHHHHHHHHHhhc--ceEEEec
Confidence 3445889999999999999999987642 3455543
|
| >d1okkd2 c.37.1.10 (D:97-303) GTPase domain of the signal recognition particle receptor FtsY {Thermus aquaticus [TaxId: 271]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermus aquaticus [TaxId: 271]
Probab=96.93 E-value=0.0002 Score=56.82 Aligned_cols=24 Identities=33% Similarity=0.452 Sum_probs=19.8
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~G 67 (245)
++.+++++||+|+||||.+-=|+-
T Consensus 5 ~~~vi~lvGptGvGKTTTiaKLA~ 28 (207)
T d1okkd2 5 KGRVVLVVGVNGVGKTTTIAKLGR 28 (207)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHH
T ss_pred CCEEEEEECCCCCCHHHHHHHHHH
Confidence 578999999999999998754553
|
| >d1ckea_ c.37.1.1 (A:) CMP kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Escherichia coli [TaxId: 562]
Probab=96.91 E-value=0.00022 Score=55.68 Aligned_cols=30 Identities=40% Similarity=0.379 Sum_probs=24.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC---CCCcceE
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS---KPTSGSI 76 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~---~p~~G~i 76 (245)
+++|.||.||||||+.+.|+--+ .-++|.+
T Consensus 5 iI~I~GppGSGKgT~ak~La~~~gl~~iStGdL 37 (225)
T d1ckea_ 5 VITIDGPSGAGKGTLCKAMAEALQWHLLDSGAI 37 (225)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEEEHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEECHHHH
Confidence 89999999999999999998543 3445655
|
| >d1q3ta_ c.37.1.1 (A:) CMP kinase {Streptococcus pneumoniae [TaxId: 1313]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: CMP kinase species: Streptococcus pneumoniae [TaxId: 1313]
Probab=96.90 E-value=0.00023 Score=55.95 Aligned_cols=23 Identities=30% Similarity=0.242 Sum_probs=20.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
+++|-||.||||||+.+.|+--+
T Consensus 5 ~IaIdGp~GsGKgT~ak~La~~l 27 (223)
T d1q3ta_ 5 QIAIDGPASSGKSTVAKIIAKDF 27 (223)
T ss_dssp EEEEECSSCSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 47888999999999999998644
|
| >d2vp4a1 c.37.1.1 (A:12-208) Deoxyribonucleoside kinase {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyribonucleoside kinase species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]
Probab=96.88 E-value=0.00017 Score=55.68 Aligned_cols=25 Identities=40% Similarity=0.371 Sum_probs=22.0
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 45 KSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 45 Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.=+++|-|+.||||||+++.|...+
T Consensus 9 p~~I~ieG~~GsGKTTl~~~L~~~l 33 (197)
T d2vp4a1 9 PFTVLIEGNIGSGKTTYLNHFEKYK 33 (197)
T ss_dssp CEEEEEECSTTSCHHHHHHTTGGGT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHh
Confidence 3489999999999999999998755
|
| >d1m7ga_ c.37.1.4 (A:) Adenosine-5'phosphosulfate kinase (APS kinase) {Fungus (Penicillium chrysogenum) [TaxId: 5076]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Adenosine-5'phosphosulfate kinase (APS kinase) domain: Adenosine-5'phosphosulfate kinase (APS kinase) species: Fungus (Penicillium chrysogenum) [TaxId: 5076]
Probab=96.88 E-value=0.00025 Score=56.02 Aligned_cols=41 Identities=24% Similarity=0.112 Sum_probs=31.0
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCC--CcceEEEcCccC
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGLSKP--TSGSINIRGYNN 83 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p--~~G~i~~~g~~~ 83 (245)
++|-++-|.|.+|||||||.+.|.--+.. ..-.+.++|..+
T Consensus 22 ~kg~vIwltGlsGsGKTTia~~L~~~l~~~~~~~~~~ldgD~i 64 (208)
T d1m7ga_ 22 QRGLTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDGDNI 64 (208)
T ss_dssp SSCEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECHHHH
T ss_pred CCCeEEEEECCCCCCHHHHHHHHHHHHHHhcCceEEEEcchHH
Confidence 57889999999999999999998743311 113577888765
|
| >d1s3ga1 c.37.1.1 (A:1-125,A:161-217) Adenylate kinase {Bacillus globisporus [TaxId: 1459]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Bacillus globisporus [TaxId: 1459]
Probab=96.87 E-value=0.00026 Score=54.18 Aligned_cols=23 Identities=22% Similarity=0.238 Sum_probs=19.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.+.|+||.||||||+.+.|+--+
T Consensus 2 ~I~i~G~pGSGKsT~a~~La~~~ 24 (182)
T d1s3ga1 2 NIVLMGLPGAGKGTQADRIVEKY 24 (182)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 36799999999999999998543
|
| >d4tmka_ c.37.1.1 (A:) Thymidylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.82 E-value=0.00031 Score=54.99 Aligned_cols=26 Identities=27% Similarity=0.348 Sum_probs=23.3
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
+|.+++|-|+-||||||+++.|.-.+
T Consensus 1 rgkfIviEG~dGsGKsT~~~~L~~~L 26 (210)
T d4tmka_ 1 RSKYIVIEGLEGAGKTTARNVVVETL 26 (210)
T ss_dssp CCCEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHH
Confidence 58999999999999999999998644
|
| >d1h65a_ c.37.1.8 (A:) Chloroplast protein translocon GTPase Toc34 {Garden pea (Pisum sativum) [TaxId: 3888]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Chloroplast protein translocon GTPase Toc34 species: Garden pea (Pisum sativum) [TaxId: 3888]
Probab=96.81 E-value=0.00025 Score=57.85 Aligned_cols=23 Identities=26% Similarity=0.505 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|.+|+|||||+|.|.|-.
T Consensus 34 ~I~LvG~tg~GKSSliN~ilg~~ 56 (257)
T d1h65a_ 34 TILVMGKGGVGKSSTVNSIIGER 56 (257)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 38899999999999999999964
|
| >d1nn5a_ c.37.1.1 (A:) Thymidylate kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.80 E-value=0.00033 Score=55.29 Aligned_cols=27 Identities=19% Similarity=0.155 Sum_probs=23.8
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
++|-+++|-|+-||||||+.+.|..-+
T Consensus 1 ~rG~lI~ieG~dGsGKsT~~~~L~~~L 27 (209)
T d1nn5a_ 1 RRGALIVLEGVDRAGKSTQSRKLVEAL 27 (209)
T ss_dssp CCCCEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CCeeEEEEECCCCCCHHHHHHHHHHHH
Confidence 479999999999999999999987654
|
| >d1e4va1 c.37.1.1 (A:1-121,A:157-214) Adenylate kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Escherichia coli [TaxId: 562]
Probab=96.76 E-value=0.00031 Score=53.45 Aligned_cols=21 Identities=24% Similarity=0.295 Sum_probs=18.5
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~G 67 (245)
.+.|+||.||||||..+.|+-
T Consensus 2 ~I~i~G~pGSGKsT~~~~La~ 22 (179)
T d1e4va1 2 RIILLGAPVAGKGTQAQFIME 22 (179)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 367899999999999999974
|
| >d2cdna1 c.37.1.1 (A:1-181) Adenylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.76 E-value=0.00036 Score=53.20 Aligned_cols=21 Identities=38% Similarity=0.439 Sum_probs=18.6
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl 68 (245)
++|+||.||||||+.+.|+--
T Consensus 3 I~i~G~pGsGKsT~a~~La~~ 23 (181)
T d2cdna1 3 VLLLGPPGAGKGTQAVKLAEK 23 (181)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 679999999999999999743
|
| >d1zj6a1 c.37.1.8 (A:2-178) ADP-ribosylation factor {Human (Homo sapiens), ARL5A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL5A [TaxId: 9606]
Probab=96.75 E-value=0.00031 Score=52.89 Aligned_cols=23 Identities=30% Similarity=0.317 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+|..|||||||++.|.+-.
T Consensus 17 kI~vvG~~~~GKSsLi~rl~~~~ 39 (177)
T d1zj6a1 17 KVIIVGLDNAGKTTILYQFSMNE 39 (177)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHhcCC
Confidence 47899999999999999998853
|
| >d1jjva_ c.37.1.1 (A:) Dephospho-CoA kinase {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Haemophilus influenzae [TaxId: 727]
Probab=96.74 E-value=0.00036 Score=54.69 Aligned_cols=21 Identities=38% Similarity=0.482 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~G 67 (245)
++||+|+.||||||+.+++.-
T Consensus 4 iIgITG~igSGKStv~~~l~~ 24 (205)
T d1jjva_ 4 IVGLTGGIGSGKTTIANLFTD 24 (205)
T ss_dssp EEEEECSTTSCHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 689999999999999999863
|
| >d1xzpa2 c.37.1.8 (A:212-371) TrmE GTPase domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: TrmE GTPase domain species: Thermotoga maritima [TaxId: 2336]
Probab=96.73 E-value=8.6e-05 Score=55.38 Aligned_cols=21 Identities=38% Similarity=0.512 Sum_probs=19.7
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl 68 (245)
++|+|+.|+|||||++.|+|-
T Consensus 3 I~liG~~n~GKSSLin~l~g~ 23 (160)
T d1xzpa2 3 MVIVGKPNVGKSTLLNRLLNE 23 (160)
T ss_dssp EEEECCHHHHTCHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHhCC
Confidence 789999999999999999875
|
| >d1iqpa2 c.37.1.20 (A:2-232) Replication factor C {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.73 E-value=0.00035 Score=55.40 Aligned_cols=23 Identities=39% Similarity=0.291 Sum_probs=20.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.+.|.||+|+|||||+++++..+
T Consensus 47 ~lll~Gp~G~GKTtla~~iak~l 69 (231)
T d1iqpa2 47 HLLFAGPPGVGKTTAALALAREL 69 (231)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 37899999999999999998754
|
| >d1sq5a_ c.37.1.6 (A:) Pantothenate kinase PanK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Pantothenate kinase PanK species: Escherichia coli [TaxId: 562]
Probab=96.73 E-value=0.0002 Score=60.15 Aligned_cols=24 Identities=29% Similarity=0.306 Sum_probs=21.8
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
++||.|++||||||+.+.|..++.
T Consensus 82 iIGIaG~sgSGKSTla~~L~~lL~ 105 (308)
T d1sq5a_ 82 IISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEeCCCCCCCcHHHHHHHHHHh
Confidence 899999999999999999987763
|
| >d1sxja2 c.37.1.20 (A:295-547) Replication factor C1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.72 E-value=0.00043 Score=55.35 Aligned_cols=25 Identities=32% Similarity=0.460 Sum_probs=22.1
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Q 035832 46 SFGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 46 e~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
..+.|.||+|+||||++++|+..+.
T Consensus 53 ~~lll~GPpG~GKTt~a~~la~~~~ 77 (253)
T d1sxja2 53 RAAMLYGPPGIGKTTAAHLVAQELG 77 (253)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHTT
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHH
Confidence 4688999999999999999998654
|
| >d1vmaa2 c.37.1.10 (A:82-294) GTPase domain of the signal recognition particle receptor FtsY {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: GTPase domain of the signal recognition particle receptor FtsY species: Thermotoga maritima [TaxId: 2336]
Probab=96.72 E-value=0.00025 Score=56.40 Aligned_cols=102 Identities=21% Similarity=0.090 Sum_probs=56.0
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccCCCCCCCCCCCCCCCcEEEEecCCCCCCCcccHHHHHHhc
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNNDGEPNNSPEPLPPEKVGIVFQFPERYFVADNVLDEVIFG 122 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~~~~~~~~~~~~~~~~i~~v~Q~~~~~~~~~tv~e~l~~~ 122 (245)
++-.+++++||+|+||||.+==|+-.+. . ..++|+++-=|...
T Consensus 9 ~~p~vi~lvGptGvGKTTTiAKLAa~~~-~----------------------~~~kV~lit~Dt~R-------------- 51 (213)
T d1vmaa2 9 EPPFVIMVVGVNGTGKTTSCGKLAKMFV-D----------------------EGKSVVLAAADTFR-------------- 51 (213)
T ss_dssp SSCEEEEEECCTTSSHHHHHHHHHHHHH-H----------------------TTCCEEEEEECTTC--------------
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHH-H----------------------CCCceEEEeecccc--------------
Confidence 4556899999999999987644443221 0 02458877766410
Q ss_pred CCCCCCchhHHHHHHHHHHHHHHHcCCCCccCCCCCCCCChHHHHHHHHHHHHhhCCCEEEEeCCCCCCCHHHHH
Q 035832 123 WPRQSGSIQLKEYLALNLQRAINWVGLDGTSLDKDPHSLSGGYKRRLALAIQLVQVPDLLILDEPLAGLDWKARA 197 (245)
Q Consensus 123 ~~~~~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~LSgGqkqrv~iAral~~~p~llllDEPts~LD~~~~~ 197 (245)
.-..+.++.+.+.+++.-. ......++ -.-.+-..+.+...+-+++|.| |+|..+....
T Consensus 52 -----------~gA~eQL~~~a~~l~i~~~-~~~~~~d~--~~~~~~~~~~~~~~~~d~ilID--TaGr~~~d~~ 110 (213)
T d1vmaa2 52 -----------AAAIEQLKIWGERVGATVI-SHSEGADP--AAVAFDAVAHALARNKDVVIID--TAGRLHTKKN 110 (213)
T ss_dssp -----------HHHHHHHHHHHHHHTCEEE-CCSTTCCH--HHHHHHHHHHHHHTTCSEEEEE--ECCCCSCHHH
T ss_pred -----------cchhHHHHHHhhhcCcccc-ccCCCCcH--HHHHHHHHHHHHHcCCCEEEEe--ccccccchHH
Confidence 0011234445556666421 12222222 2233344456667788888888 7775554443
|
| >d1szpa2 c.37.1.11 (A:145-395) DNA repair protein Rad51, catalytic domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.72 E-value=0.00042 Score=54.57 Aligned_cols=26 Identities=31% Similarity=0.395 Sum_probs=23.5
Q ss_pred EcCCCEEEEECCCCCcHHHHHHHHhC
Q 035832 42 LPEKSFGLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 42 i~~Ge~~~liG~nGsGKSTLl~~l~G 67 (245)
+++|+++.|.||.|||||||..-++-
T Consensus 31 i~~G~~~li~G~pGsGKT~l~lq~~~ 56 (251)
T d1szpa2 31 VETGSITELFGEFRTGKSQLCHTLAV 56 (251)
T ss_dssp EESSSEEEEEESTTSSHHHHHHHHTT
T ss_pred CcCCeEEEEEcCCCCCHHHHHHHHHH
Confidence 78999999999999999999977653
|
| >d1wb1a4 c.37.1.8 (A:1-179) Elongation factor SelB, N-terminal domain {Methanococcus maripaludis [TaxId: 39152]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor SelB, N-terminal domain species: Methanococcus maripaludis [TaxId: 39152]
Probab=96.70 E-value=0.00036 Score=53.37 Aligned_cols=22 Identities=41% Similarity=0.534 Sum_probs=20.4
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
+||+|+..||||||++.|+|.-
T Consensus 8 IaiiG~~naGKSTL~n~L~~~~ 29 (179)
T d1wb1a4 8 LGIFGHIDHGKTTLSKVLTEIA 29 (179)
T ss_dssp EEEEECTTSSHHHHHHHHHTTC
T ss_pred EEEEeCCCCcHHHHHHHHHHhc
Confidence 8999999999999999999754
|
| >d1p5zb_ c.37.1.1 (B:) Deoxycytidine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxycytidine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.70 E-value=0.00023 Score=56.44 Aligned_cols=27 Identities=26% Similarity=0.301 Sum_probs=24.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
++.+++|-|+-||||||+++.|+..+.
T Consensus 1 ~~k~I~ieG~dGsGKST~~~~L~~~l~ 27 (241)
T d1p5zb_ 1 RIKKISIEGNIAAGKSTFVNILKQLCE 27 (241)
T ss_dssp CCEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHh
Confidence 467899999999999999999998764
|
| >d2fh5b1 c.37.1.8 (B:63-269) Signal recognition particle receptor beta-subunit {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Signal recognition particle receptor beta-subunit species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.67 E-value=0.00032 Score=54.62 Aligned_cols=22 Identities=36% Similarity=0.258 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
-++|+|+.|||||||++.+.+-
T Consensus 2 ~V~ivG~~~~GKTsLl~~l~~~ 23 (207)
T d2fh5b1 2 AVLFVGLCDSGKTLLFVRLLTG 23 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4789999999999999999864
|
| >d1tmka_ c.37.1.1 (A:) Thymidylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.61 E-value=0.00052 Score=54.21 Aligned_cols=28 Identities=32% Similarity=0.325 Sum_probs=25.0
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGLSKP 71 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~p 71 (245)
+|.+++|-|+-||||||+.+.|+--+..
T Consensus 2 kGk~I~iEG~DGsGKST~~~~L~~~L~~ 29 (214)
T d1tmka_ 2 RGKLILIEGLDRTGKTTQCNILYKKLQP 29 (214)
T ss_dssp CCCEEEEEESTTSSHHHHHHHHHHHTTT
T ss_pred CeEEEEEECCCCCcHHHHHHHHHHHHHh
Confidence 7999999999999999999999866653
|
| >d1sxjd2 c.37.1.20 (D:26-262) Replication factor C2 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C2 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.61 E-value=0.00046 Score=54.56 Aligned_cols=22 Identities=32% Similarity=0.484 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
+.|.||+|+||||++++++..+
T Consensus 36 lll~Gp~G~GKTtl~~~i~~~l 57 (237)
T d1sxjd2 36 MLFYGPPGTGKTSTILALTKEL 57 (237)
T ss_dssp EEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHH
Confidence 7899999999999999998753
|
| >d1zd9a1 c.37.1.8 (A:18-181) ADP-ribosylation factor {Human (Homo sapiens), ARL8A [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARL8A [TaxId: 9606]
Probab=96.61 E-value=0.00039 Score=52.14 Aligned_cols=20 Identities=35% Similarity=0.446 Sum_probs=17.8
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 035832 48 GLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~G 67 (245)
++++|++|+|||||++.+.+
T Consensus 5 i~i~G~~~~GKTsLl~~l~~ 24 (164)
T d1zd9a1 5 LTLVGLQYSGKTTFVNVIAS 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 67999999999999997764
|
| >d1akya1 c.37.1.1 (A:3-130,A:169-220) Adenylate kinase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.60 E-value=0.00055 Score=52.23 Aligned_cols=21 Identities=29% Similarity=0.349 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl 68 (245)
+.|+||.||||||+.+.|+--
T Consensus 5 Ivl~G~pGSGKtT~a~~La~~ 25 (180)
T d1akya1 5 MVLIGPPGAGKGTQAPNLQER 25 (180)
T ss_dssp EEEECCTTSSHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHH
Confidence 568899999999999999854
|
| >d2ak3a1 c.37.1.1 (A:0-124,A:162-225) Adenylate kinase {Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Adenylate kinase species: Cow (Bos taurus), mitochondrial izozyme-3 [TaxId: 9913]
Probab=96.58 E-value=0.00057 Score=52.89 Aligned_cols=23 Identities=30% Similarity=0.341 Sum_probs=19.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.++|+||.||||||+.+.|+--+
T Consensus 8 rIiliG~PGSGKtT~a~~La~~~ 30 (189)
T d2ak3a1 8 RAAIMGAPGSGKGTVSSRITKHF 30 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHB
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 46799999999999999998643
|
| >d1fzqa_ c.37.1.8 (A:) ADP-ribosylation factor {Mouse (Mus musculus), ARL3 [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Mouse (Mus musculus), ARL3 [TaxId: 10090]
Probab=96.55 E-value=0.00051 Score=51.81 Aligned_cols=22 Identities=45% Similarity=0.575 Sum_probs=19.8
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
++++|+.|+|||||++.+.+-.
T Consensus 19 I~vvG~~~vGKSsLi~~l~~~~ 40 (176)
T d1fzqa_ 19 ILLLGLDNAGKTTLLKQLASED 40 (176)
T ss_dssp EEEEESTTSSHHHHHHHHCCSC
T ss_pred EEEECCCCCCHHHHHHHHhcCC
Confidence 7899999999999999997753
|
| >d2erxa1 c.37.1.8 (A:6-176) di-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: di-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.53 E-value=0.0011 Score=49.68 Aligned_cols=20 Identities=30% Similarity=0.557 Sum_probs=17.9
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 035832 48 GLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~G 67 (245)
++|+|..|+|||||++-+.+
T Consensus 5 i~viG~~~vGKTsLi~r~~~ 24 (171)
T d2erxa1 5 VAVFGAGGVGKSSLVLRFVK 24 (171)
T ss_dssp EEEECCTTSSHHHHHHHHHT
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999987765
|
| >d2fnaa2 c.37.1.20 (A:1-283) Archaeal ATPase SSO1545 {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Archaeal ATPase SSO1545 species: Sulfolobus solfataricus [TaxId: 2287]
Probab=96.52 E-value=0.00063 Score=54.32 Aligned_cols=24 Identities=17% Similarity=0.445 Sum_probs=21.2
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~G 67 (245)
.+.++.|.||.|+|||||++.++-
T Consensus 28 ~~~~i~i~G~~G~GKTsLl~~~~~ 51 (283)
T d2fnaa2 28 RAPITLVLGLRRTGKSSIIKIGIN 51 (283)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHH
T ss_pred cCCEEEEEcCCCCcHHHHHHHHHH
Confidence 577899999999999999998764
|
| >d1htwa_ c.37.1.18 (A:) Hypothetical protein HI0065 {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: YjeE-like domain: Hypothetical protein HI0065 species: Haemophilus influenzae [TaxId: 727]
Probab=96.51 E-value=0.00072 Score=51.11 Aligned_cols=29 Identities=24% Similarity=0.185 Sum_probs=25.7
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 41 SLPEKSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 41 ~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
..++|.+++|.|+=|||||||.|.++.-+
T Consensus 29 ~~~~g~ii~L~G~LGaGKTtfvr~~~~~l 57 (158)
T d1htwa_ 29 HTEKAIMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp CCSSCEEEEEECSTTSSHHHHHHHHHHHT
T ss_pred cCCCCeEEEEecCCCccHHHHHHHHHhhc
Confidence 34789999999999999999999988655
|
| >d1tq4a_ c.37.1.8 (A:) Interferon-inducible GTPase {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-inducible GTPase species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.51 E-value=0.00068 Score=58.80 Aligned_cols=23 Identities=30% Similarity=0.648 Sum_probs=21.2
Q ss_pred EEEECCCCCcHHHHHHHHhCCCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
++|+|++|+|||||+|.|.|.-.
T Consensus 59 Iai~G~~n~GKSSLiNaL~G~~~ 81 (400)
T d1tq4a_ 59 VAVTGETGSGKSSFINTLRGIGN 81 (400)
T ss_dssp EEEEECTTSSHHHHHHHHHTCCT
T ss_pred EEEECCCCCCHHHHHHHHhCCCc
Confidence 89999999999999999999653
|
| >d1ky3a_ c.37.1.8 (A:) Rab-related protein ypt7p {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein ypt7p species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.49 E-value=0.00052 Score=51.80 Aligned_cols=20 Identities=40% Similarity=0.662 Sum_probs=18.2
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 035832 48 GLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~G 67 (245)
++|+|+.|+|||||++.+.+
T Consensus 5 i~~vG~~~vGKSsLi~~~~~ 24 (175)
T d1ky3a_ 5 VIILGDSGVGKTSLMHRYVN 24 (175)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHc
Confidence 68999999999999998775
|
| >d1in4a2 c.37.1.20 (A:17-254) Holliday junction helicase RuvB {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermotoga maritima [TaxId: 2336]
Probab=96.49 E-value=0.00061 Score=54.09 Aligned_cols=26 Identities=35% Similarity=0.464 Sum_probs=22.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLSKPT 72 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~~p~ 72 (245)
.+.+.||.|+||||+.++|+..+...
T Consensus 37 ~~L~~GPpGtGKT~lA~~la~~~~~~ 62 (238)
T d1in4a2 37 HVLLAGPPGLGKTTLAHIIASELQTN 62 (238)
T ss_dssp CEEEESSTTSSHHHHHHHHHHHHTCC
T ss_pred eEEEECCCCCcHHHHHHHHHhccCCC
Confidence 47899999999999999999876654
|
| >d2p67a1 c.37.1.10 (A:1-327) LAO/AO transport system kinase ArgK {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: LAO/AO transport system kinase ArgK species: Escherichia coli [TaxId: 562]
Probab=96.49 E-value=0.00058 Score=57.71 Aligned_cols=27 Identities=26% Similarity=0.272 Sum_probs=22.8
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.+.-++||.||.|||||||++.|+..+
T Consensus 52 ~~~~~IgitG~pGaGKSTLi~~l~~~~ 78 (327)
T d2p67a1 52 GNTLRLGVTGTPGAGKSTFLEAFGMLL 78 (327)
T ss_dssp SCSEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCceEEEeeCCCCCCHHHHHHHHHHHH
Confidence 346679999999999999999997543
|
| >d1tf7a1 c.37.1.11 (A:14-255) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.48 E-value=0.00077 Score=52.65 Aligned_cols=24 Identities=38% Similarity=0.475 Sum_probs=21.7
Q ss_pred EcCCCEEEEECCCCCcHHHHHHHH
Q 035832 42 LPEKSFGLIFGRSGSGKTTLLQLL 65 (245)
Q Consensus 42 i~~Ge~~~liG~nGsGKSTLl~~l 65 (245)
+++|+++.|.|++|+|||||..-+
T Consensus 23 i~~G~~~~I~G~~G~GKT~la~~~ 46 (242)
T d1tf7a1 23 LPIGRSTLVSGTSGTGKTLFSIQF 46 (242)
T ss_dssp EETTSEEEEEESTTSSHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHH
Confidence 789999999999999999998543
|
| >d1vhta_ c.37.1.1 (A:) Dephospho-CoA kinase {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Dephospho-CoA kinase species: Escherichia coli [TaxId: 562]
Probab=96.48 E-value=0.0007 Score=53.10 Aligned_cols=21 Identities=33% Similarity=0.447 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~G 67 (245)
++||+|..||||||..+++..
T Consensus 5 iIgitG~igSGKStv~~~l~~ 25 (208)
T d1vhta_ 5 IVALTGGIGSGKSTVANAFAD 25 (208)
T ss_dssp EEEEECCTTSCHHHHHHHHHH
T ss_pred EEEEECCCcCCHHHHHHHHHH
Confidence 789999999999999999863
|
| >d1a7ja_ c.37.1.6 (A:) Phosphoribulokinase {Rhodobacter sphaeroides [TaxId: 1063]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Phosphoribulokinase species: Rhodobacter sphaeroides [TaxId: 1063]
Probab=96.46 E-value=0.00034 Score=58.15 Aligned_cols=24 Identities=21% Similarity=0.353 Sum_probs=18.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
++||.|+|||||||+.+.|.-++.
T Consensus 6 IIgIaG~SGSGKTTva~~l~~i~~ 29 (288)
T d1a7ja_ 6 IISVTGSSGAGTSTVKHTFDQIFR 29 (288)
T ss_dssp EEEEESCC---CCTHHHHHHHHHH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHh
Confidence 899999999999999999877653
|
| >d1tf7a2 c.37.1.11 (A:256-497) Circadian clock protein KaiC {Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Circadian clock protein KaiC species: Synechococcus sp. strain PCC 7942 (Anacystis nidulans R2) [TaxId: 1140]
Probab=96.43 E-value=0.00084 Score=53.17 Aligned_cols=25 Identities=32% Similarity=0.429 Sum_probs=22.7
Q ss_pred EcCCCEEEEECCCCCcHHHHHHHHh
Q 035832 42 LPEKSFGLIFGRSGSGKTTLLQLLA 66 (245)
Q Consensus 42 i~~Ge~~~liG~nGsGKSTLl~~l~ 66 (245)
+++|.++.|.||+|||||||+.-++
T Consensus 23 i~~gsl~li~G~pGsGKT~l~~qia 47 (242)
T d1tf7a2 23 FFKDSIILATGATGTGKTLLVSRFV 47 (242)
T ss_dssp EESSCEEEEEECTTSSHHHHHHHHH
T ss_pred CcCCeEEEEEeCCCCCHHHHHHHHH
Confidence 7899999999999999999986664
|
| >d3raba_ c.37.1.8 (A:) Rab3a {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab3a species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.42 E-value=0.0006 Score=51.35 Aligned_cols=20 Identities=45% Similarity=0.509 Sum_probs=18.0
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 035832 48 GLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~G 67 (245)
++++|+.|+|||||++.+.+
T Consensus 8 i~vvG~~~vGKTsLi~~l~~ 27 (169)
T d3raba_ 8 ILIIGNSSVGKTSFLFRYAD 27 (169)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHc
Confidence 78999999999999997764
|
| >d1pzna2 c.37.1.11 (A:96-349) DNA repair protein Rad51, catalytic domain {Archaeon Pyrococcus furiosus [TaxId: 2261]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Pyrococcus furiosus [TaxId: 2261]
Probab=96.41 E-value=0.00078 Score=53.43 Aligned_cols=24 Identities=38% Similarity=0.612 Sum_probs=21.7
Q ss_pred EcCCCEEEEECCCCCcHHHHHHHH
Q 035832 42 LPEKSFGLIFGRSGSGKTTLLQLL 65 (245)
Q Consensus 42 i~~Ge~~~liG~nGsGKSTLl~~l 65 (245)
+++|+++.|.||+|||||||.--+
T Consensus 33 lp~G~~~li~G~pGsGKT~~~lq~ 56 (254)
T d1pzna2 33 IETQAITEVFGEFGSGKTQLAHTL 56 (254)
T ss_dssp EESSEEEEEEESTTSSHHHHHHHH
T ss_pred ccCCEEEEEEcCCCCCHHHHHHHH
Confidence 789999999999999999998644
|
| >d1v5wa_ c.37.1.11 (A:) Meiotic recombination protein DMC1/LIM15 homolog {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Meiotic recombination protein DMC1/LIM15 homolog species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.40 E-value=0.00084 Score=53.14 Aligned_cols=26 Identities=27% Similarity=0.328 Sum_probs=23.5
Q ss_pred EcCCCEEEEECCCCCcHHHHHHHHhC
Q 035832 42 LPEKSFGLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 42 i~~Ge~~~liG~nGsGKSTLl~~l~G 67 (245)
|.+|.++.|.||+|||||||.-.++.
T Consensus 34 ip~G~~~~i~G~~GsGKT~lalq~~~ 59 (258)
T d1v5wa_ 34 IESMAITEAFGEFRTGKTQLSHTLCV 59 (258)
T ss_dssp BCSSEEEEEECCTTCTHHHHHHHHHH
T ss_pred CcCCEEEEEECCCCCCHHHHHHHHHH
Confidence 78999999999999999999877763
|
| >d2i1qa2 c.37.1.11 (A:65-322) DNA repair protein Rad51, catalytic domain {Archaeon Methanococcus voltae [TaxId: 2188]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: DNA repair protein Rad51, catalytic domain species: Archaeon Methanococcus voltae [TaxId: 2188]
Probab=96.38 E-value=0.00085 Score=52.66 Aligned_cols=26 Identities=31% Similarity=0.328 Sum_probs=23.1
Q ss_pred EcCCCEEEEECCCCCcHHHHHHHHhC
Q 035832 42 LPEKSFGLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 42 i~~Ge~~~liG~nGsGKSTLl~~l~G 67 (245)
+.+|+++.|.|++|+|||||.--++-
T Consensus 31 l~~G~l~~i~G~~G~GKT~~~l~~a~ 56 (258)
T d2i1qa2 31 LESQSVTEFAGVFGSGKTQIMHQSCV 56 (258)
T ss_dssp EETTEEEEEEESTTSSHHHHHHHHHH
T ss_pred ccCCeEEEEEeCCCCCHHHHHHHHHH
Confidence 78999999999999999999866653
|
| >d1ctqa_ c.37.1.8 (A:) cH-p21 Ras protein {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: cH-p21 Ras protein species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.37 E-value=0.00082 Score=50.34 Aligned_cols=21 Identities=29% Similarity=0.365 Sum_probs=18.5
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl 68 (245)
++++|++|+|||||++.+.+-
T Consensus 6 i~viG~~~vGKTsli~~l~~~ 26 (166)
T d1ctqa_ 6 LVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999887653
|
| >d1ofha_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=96.33 E-value=0.00091 Score=55.84 Aligned_cols=38 Identities=26% Similarity=0.332 Sum_probs=27.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCccC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGYNN 83 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~~ 83 (245)
++.-+.++||+|+|||+|.|+|+.... .--+.+++-.+
T Consensus 48 ~~~~iLl~GPpG~GKT~lAkalA~~~~--~~~~~i~~s~~ 85 (309)
T d1ofha_ 48 TPKNILMIGPTGVGKTEIARRLAKLAN--APFIKVEATKF 85 (309)
T ss_dssp CCCCEEEECCTTSSHHHHHHHHHHHHT--CCEEEEEGGGG
T ss_pred CCceEEEECCCCCCHHHHHHHHhhccc--cchhccccccc
Confidence 345567899999999999999998753 22456655443
|
| >d2f9la1 c.37.1.8 (A:8-182) Rab11b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab11b species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.33 E-value=0.00073 Score=51.15 Aligned_cols=20 Identities=35% Similarity=0.597 Sum_probs=17.8
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 035832 48 GLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~G 67 (245)
++++|+.|+|||||++.+.+
T Consensus 7 i~vvG~~~vGKTsLi~~~~~ 26 (175)
T d2f9la1 7 VVLIGDSGVGKSNLLSRFTR 26 (175)
T ss_dssp EEEESSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999997655
|
| >d1ixsb2 c.37.1.20 (B:4-242) Holliday junction helicase RuvB {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Holliday junction helicase RuvB species: Thermus thermophilus [TaxId: 274]
Probab=96.30 E-value=0.00076 Score=53.61 Aligned_cols=24 Identities=42% Similarity=0.533 Sum_probs=20.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
-+.+.||.|+||||+.+++++.+.
T Consensus 37 ~~Ll~GPpG~GKTtla~~la~~~~ 60 (239)
T d1ixsb2 37 HLLLFGPPGLGKTTLAHVIAHELG 60 (239)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEECCCCCCHHHHHHHHHHHhC
Confidence 367999999999999999998653
|
| >d2f7sa1 c.37.1.8 (A:5-190) Rab27b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab27b species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.29 E-value=0.0011 Score=50.60 Aligned_cols=22 Identities=41% Similarity=0.449 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
++|+|+.|+|||||++.+.+-.
T Consensus 8 i~ivG~~~vGKTsLi~~l~~~~ 29 (186)
T d2f7sa1 8 LLALGDSGVGKTTFLYRYTDNK 29 (186)
T ss_dssp EEEESCTTSSHHHHHHHHHCSC
T ss_pred EEEECCCCcCHHHHHHHHhcCC
Confidence 7899999999999998887643
|
| >d1z2aa1 c.37.1.8 (A:8-171) Rab23 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab23 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.27 E-value=0.001 Score=49.68 Aligned_cols=20 Identities=20% Similarity=0.444 Sum_probs=17.5
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 035832 48 GLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~G 67 (245)
++++|+.|+|||||++-+.+
T Consensus 5 v~liG~~~vGKSsLi~rl~~ 24 (164)
T d1z2aa1 5 MVVVGNGAVGKSSMIQRYCK 24 (164)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67999999999999986663
|
| >d1gsia_ c.37.1.1 (A:) Thymidylate kinase {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidylate kinase species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=96.24 E-value=0.0011 Score=51.18 Aligned_cols=23 Identities=39% Similarity=0.499 Sum_probs=20.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
+++|-|+-||||||+++.|..-+
T Consensus 2 lI~ieG~dGsGKST~~~~L~~~l 24 (208)
T d1gsia_ 2 LIAIEGVDGAGKRTLVEKLSGAF 24 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 57899999999999999998644
|
| >d2gjsa1 c.37.1.8 (A:91-258) Rad {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rad species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.24 E-value=0.0012 Score=49.69 Aligned_cols=23 Identities=30% Similarity=0.697 Sum_probs=19.6
Q ss_pred EEEECCCCCcHHHHHHHHhCCCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
++|+|+.|+|||||++.+.+...
T Consensus 4 i~lvG~~~vGKTsLi~~~~~~~~ 26 (168)
T d2gjsa1 4 VLLLGAPGVGKSALARIFGGVED 26 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHTC--
T ss_pred EEEECCCCcCHHHHHHHHhCCcc
Confidence 67999999999999999988643
|
| >d1moza_ c.37.1.8 (A:) ADP-ribosylation factor {Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Baker's yeast (Saccharomyces cerevisiae), ARL1 [TaxId: 4932]
Probab=96.24 E-value=0.00067 Score=51.60 Aligned_cols=21 Identities=48% Similarity=0.488 Sum_probs=18.9
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl 68 (245)
++++|++|+|||||++.+.+-
T Consensus 20 I~lvG~~~vGKTsLi~~l~~~ 40 (182)
T d1moza_ 20 ILILGLDGAGKTTILYRLQIG 40 (182)
T ss_dssp EEEEEETTSSHHHHHHHTCCS
T ss_pred EEEECCCCCCHHHHHHHHhcC
Confidence 779999999999999998654
|
| >d1lv7a_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Escherichia coli [TaxId: 562]
Probab=96.24 E-value=0.0013 Score=53.45 Aligned_cols=26 Identities=38% Similarity=0.503 Sum_probs=22.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCC
Q 035832 45 KSFGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 45 Ge~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
..-+.|.||.|+|||+|.+.|+..+.
T Consensus 45 ~~~iLL~GppGtGKT~la~~iA~~~~ 70 (256)
T d1lv7a_ 45 PKGVLMVGPPGTGKTLLAKAIAGEAK 70 (256)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCeEEeeCCCCCCccHHHHHHHHHcC
Confidence 34588999999999999999997653
|
| >d1g7sa4 c.37.1.8 (A:1-227) Initiation factor IF2/eIF5b, N-terminal (G) domain {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor IF2/eIF5b, N-terminal (G) domain species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]
Probab=96.22 E-value=0.00094 Score=53.08 Aligned_cols=23 Identities=35% Similarity=0.518 Sum_probs=20.5
Q ss_pred CEEEEECCCCCcHHHHHHHHhCC
Q 035832 46 SFGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 46 e~~~liG~nGsGKSTLl~~l~Gl 68 (245)
-++||+|...||||||++.|.+-
T Consensus 6 p~IaIiGh~d~GKSTL~~~L~~~ 28 (227)
T d1g7sa4 6 PIVSVLGHVDHGKTTLLDHIRGS 28 (227)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEEeCCCccHHHHHHHHHhh
Confidence 35999999999999999999763
|
| >d1kkma_ c.91.1.2 (A:) HPr kinase HprK C-terminal domain {Lactobacillus casei [TaxId: 1582]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Lactobacillus casei [TaxId: 1582]
Probab=96.21 E-value=0.0027 Score=48.68 Aligned_cols=32 Identities=31% Similarity=0.287 Sum_probs=25.3
Q ss_pred eeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHh
Q 035832 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLA 66 (245)
Q Consensus 34 il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~ 66 (245)
.++..-+.+ .|.-+.|.|+||+|||||.-.+.
T Consensus 4 ~lH~~~v~~-~g~gvl~~G~sG~GKStlal~l~ 35 (176)
T d1kkma_ 4 SMHGVLVDI-YGLGVLITGDSGVGKSETALELV 35 (176)
T ss_dssp EEEEEEEEE-TTEEEEEECCTTSCHHHHHHHHH
T ss_pred eEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHH
Confidence 466666666 47789999999999999886654
|
| >d1fnna2 c.37.1.20 (A:1-276) CDC6, N-domain {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6, N-domain species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]
Probab=96.19 E-value=0.0011 Score=52.72 Aligned_cols=26 Identities=38% Similarity=0.508 Sum_probs=22.9
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCCC
Q 035832 46 SFGLIFGRSGSGKTTLLQLLAGLSKP 71 (245)
Q Consensus 46 e~~~liG~nGsGKSTLl~~l~Gl~~p 71 (245)
..+.|.||.|+||||+++.++..++.
T Consensus 44 ~~lll~GppGtGKT~l~~~l~~~l~~ 69 (276)
T d1fnna2 44 PRATLLGRPGTGKTVTLRKLWELYKD 69 (276)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred CceEEECCCCCCHHHHHHHHHHHHhc
Confidence 57889999999999999999987654
|
| >d2g3ya1 c.37.1.8 (A:73-244) GTP-binding protein GEM {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein GEM species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.19 E-value=0.0016 Score=49.10 Aligned_cols=23 Identities=35% Similarity=0.700 Sum_probs=20.3
Q ss_pred EEEECCCCCcHHHHHHHHhCCCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
++++|..|+|||||++.+.+...
T Consensus 6 v~lvG~~~vGKTsLi~~~~~~~~ 28 (172)
T d2g3ya1 6 VVLIGEQGVGKSTLANIFAGVHD 28 (172)
T ss_dssp EEEECCTTSSHHHHHHHHHCCCC
T ss_pred EEEECCCCcCHHHHHHHHHhCcC
Confidence 67999999999999999987653
|
| >d1g16a_ c.37.1.8 (A:) Rab-related protein Sec4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-related protein Sec4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.19 E-value=0.0011 Score=49.43 Aligned_cols=21 Identities=38% Similarity=0.474 Sum_probs=18.3
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl 68 (245)
++++|++|+|||||++.+++-
T Consensus 5 i~vvG~~~vGKTSli~~l~~~ 25 (166)
T d1g16a_ 5 ILLIGDSGVGKSCLLVRFVED 25 (166)
T ss_dssp EEEEESTTSSHHHHHHHHHHC
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 679999999999999977653
|
| >d1sxjb2 c.37.1.20 (B:7-230) Replication factor C4 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C4 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.18 E-value=0.0012 Score=52.07 Aligned_cols=42 Identities=12% Similarity=0.188 Sum_probs=27.4
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhH
Q 035832 179 PDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKE 221 (245)
Q Consensus 179 p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~ 221 (245)
.+++++||.- .+....+..+...+........+++++++.+.
T Consensus 102 ~kviiiDe~d-~~~~~~~~~ll~~~e~~~~~~~~i~~~~~~~~ 143 (224)
T d1sxjb2 102 HKIVILDEAD-SMTAGAQQALRRTMELYSNSTRFAFACNQSNK 143 (224)
T ss_dssp CEEEEEESGG-GSCHHHHHTTHHHHHHTTTTEEEEEEESCGGG
T ss_pred eEEEEEeccc-ccchhHHHHHhhhccccccceeeeeccCchhh
Confidence 5688888854 55566666666666555445667777777654
|
| >d1xtqa1 c.37.1.8 (A:3-169) GTP-binding protein RheB {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein RheB species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.17 E-value=0.00088 Score=50.15 Aligned_cols=21 Identities=24% Similarity=0.229 Sum_probs=18.4
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~G 67 (245)
-++|+|+.|+|||||++.+.+
T Consensus 6 Kv~liG~~~vGKTsLl~~~~~ 26 (167)
T d1xtqa1 6 KIAILGYRSVGKSSLTIQFVE 26 (167)
T ss_dssp EEEEEESTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 478999999999999998754
|
| >d2a5ja1 c.37.1.8 (A:9-181) Rab2b {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab2b species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.14 E-value=0.001 Score=50.15 Aligned_cols=21 Identities=33% Similarity=0.531 Sum_probs=18.1
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl 68 (245)
++++|++|+|||||++.+.+-
T Consensus 6 ivvvG~~~vGKTsli~r~~~~ 26 (173)
T d2a5ja1 6 YIIIGDTGVGKSCLLLQFTDK 26 (173)
T ss_dssp EEEESSTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHhcC
Confidence 679999999999999976643
|
| >d2erya1 c.37.1.8 (A:10-180) r-Ras2 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras2 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.14 E-value=0.00095 Score=50.23 Aligned_cols=20 Identities=25% Similarity=0.393 Sum_probs=17.6
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 035832 48 GLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~G 67 (245)
++|+|.+|+|||||++.+.+
T Consensus 8 i~lvG~~~vGKTsLi~r~~~ 27 (171)
T d2erya1 8 LVVVGGGGVGKSALTIQFIQ 27 (171)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 78999999999999987654
|
| >d1knxa2 c.91.1.2 (A:133-309) HPr kinase HprK C-terminal domain {Mycoplasma pneumoniae [TaxId: 2104]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Mycoplasma pneumoniae [TaxId: 2104]
Probab=96.13 E-value=0.0026 Score=48.81 Aligned_cols=32 Identities=31% Similarity=0.298 Sum_probs=26.5
Q ss_pred eeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHh
Q 035832 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLA 66 (245)
Q Consensus 34 il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~ 66 (245)
.++..-+.+ .|.-+.|.||||+|||||.-.+.
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sG~GKS~lal~l~ 36 (177)
T d1knxa2 5 QIHGVLLEV-FGVGVLLTGRSGIGKSECALDLI 36 (177)
T ss_dssp EEEEEEEEE-TTEEEEEEESSSSSHHHHHHHHH
T ss_pred eEEEEEEEE-CCEEEEEEcCCCCCHHHHHHHHH
Confidence 467777777 68889999999999999987665
|
| >d1wmsa_ c.37.1.8 (A:) Rab9a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab9a species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.11 E-value=0.0018 Score=48.74 Aligned_cols=20 Identities=25% Similarity=0.562 Sum_probs=17.3
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 035832 48 GLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~G 67 (245)
++++|++|+|||||++.+..
T Consensus 9 I~vvG~~~vGKSSli~~~~~ 28 (174)
T d1wmsa_ 9 VILLGDGGVGKSSLMNRYVT 28 (174)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 77999999999999976653
|
| >d1odfa_ c.37.1.6 (A:) Hypothetical protein Ygr205W {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Phosphoribulokinase/pantothenate kinase domain: Hypothetical protein Ygr205W species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.10 E-value=0.0014 Score=54.14 Aligned_cols=22 Identities=27% Similarity=0.285 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
++||-|+.|||||||.+.|.-.
T Consensus 29 iIGi~G~qGSGKSTl~~~l~~~ 50 (286)
T d1odfa_ 29 FIFFSGPQGSGKSFTSIQIYNH 50 (286)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHH
Confidence 7899999999999999877533
|
| >d1d2na_ c.37.1.20 (A:) Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein {Chinese hamster (Cricetulus griseus) [TaxId: 10029]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Hexamerization domain of N-ethylmalemide-sensitive fusion (NSF) protein species: Chinese hamster (Cricetulus griseus) [TaxId: 10029]
Probab=96.09 E-value=0.0013 Score=53.02 Aligned_cols=22 Identities=36% Similarity=0.285 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
-+.|.||.|||||+|.+.|+..
T Consensus 42 ~vLL~GppGtGKT~la~alA~~ 63 (246)
T d1d2na_ 42 SVLLEGPPHSGKTALAAKIAEE 63 (246)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECcCCCCHHHHHHHHhhc
Confidence 3779999999999999999864
|
| >d2ew1a1 c.37.1.8 (A:4-174) Rab30 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab30 species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.08 E-value=0.0013 Score=49.45 Aligned_cols=20 Identities=30% Similarity=0.554 Sum_probs=18.3
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 035832 48 GLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~G 67 (245)
++|+|+.|+|||||++.+++
T Consensus 8 i~lvG~~~vGKTsLi~~l~~ 27 (171)
T d2ew1a1 8 IVLIGNAGVGKTCLVRRFTQ 27 (171)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998875
|
| >d1vg8a_ c.37.1.8 (A:) Rab7 {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab7 species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=96.07 E-value=0.0012 Score=50.29 Aligned_cols=20 Identities=40% Similarity=0.664 Sum_probs=17.8
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 035832 48 GLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~G 67 (245)
++++|..|+|||||++.+.+
T Consensus 5 v~vvG~~~vGKSSLi~~l~~ 24 (184)
T d1vg8a_ 5 VIILGDSGVGKTSLMNQYVN 24 (184)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67999999999999987764
|
| >d1sxje2 c.37.1.20 (E:4-255) Replication factor C5 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C5 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.04 E-value=0.0012 Score=52.48 Aligned_cols=42 Identities=17% Similarity=0.325 Sum_probs=33.1
Q ss_pred CCCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChh
Q 035832 178 VPDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLK 220 (245)
Q Consensus 178 ~p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~ 220 (245)
+..++++||.-. |.......+.+.+.+......+|++|++.+
T Consensus 131 ~~~iiiide~d~-l~~~~~~~l~~~~e~~~~~~~~Il~tn~~~ 172 (252)
T d1sxje2 131 RYKCVIINEANS-LTKDAQAALRRTMEKYSKNIRLIMVCDSMS 172 (252)
T ss_dssp CCEEEEEECTTS-SCHHHHHHHHHHHHHSTTTEEEEEEESCSC
T ss_pred CceEEEeccccc-cccccchhhhcccccccccccceeeecccc
Confidence 456999999854 888888888888876655567899999875
|
| >d1kaoa_ c.37.1.8 (A:) Rap2a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap2a species: Human (Homo sapiens) [TaxId: 9606]
Probab=96.03 E-value=0.0017 Score=48.49 Aligned_cols=21 Identities=24% Similarity=0.384 Sum_probs=18.3
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl 68 (245)
++|+|+.|+|||||++-+.+-
T Consensus 6 i~lvG~~~vGKTsLi~r~~~~ 26 (167)
T d1kaoa_ 6 VVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999887653
|
| >d1z06a1 c.37.1.8 (A:32-196) Rab-33b {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-33b species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.02 E-value=0.0017 Score=48.33 Aligned_cols=20 Identities=30% Similarity=0.399 Sum_probs=17.7
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 035832 48 GLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~G 67 (245)
++++|+.|+|||||++.+.+
T Consensus 5 v~liG~~~vGKTsLl~~~~~ 24 (165)
T d1z06a1 5 IIVIGDSNVGKTCLTYRFCA 24 (165)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67999999999999987764
|
| >d1sxjc2 c.37.1.20 (C:12-238) Replication factor C3 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication factor C3 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.02 E-value=0.0015 Score=51.29 Aligned_cols=42 Identities=19% Similarity=0.309 Sum_probs=30.7
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhH
Q 035832 179 PDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKE 221 (245)
Q Consensus 179 p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~ 221 (245)
.+++++||. ..+.......++..|.+.....-++++|++...
T Consensus 100 ~kiiiiDe~-d~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~ 141 (227)
T d1sxjc2 100 FKLIILDEA-DAMTNAAQNALRRVIERYTKNTRFCVLANYAHK 141 (227)
T ss_dssp CEEEEETTG-GGSCHHHHHHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred eEEEEEecc-ccchhhHHHHHHHHhhhcccceeeccccCcHHH
Confidence 368999996 467788888888888776555667777776443
|
| >d1z0ja1 c.37.1.8 (A:2-168) Rab-22a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab-22a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=96.01 E-value=0.0017 Score=48.58 Aligned_cols=20 Identities=20% Similarity=0.471 Sum_probs=17.9
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 035832 48 GLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~G 67 (245)
++|+|..|+|||||++-+..
T Consensus 7 i~lvG~~~vGKTsli~rl~~ 26 (167)
T d1z0ja1 7 VCLLGDTGVGKSSIMWRFVE 26 (167)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67999999999999988764
|
| >d1e0sa_ c.37.1.8 (A:) ADP-ribosylation factor {Human (Homo sapiens), ARF6 [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: ADP-ribosylation factor species: Human (Homo sapiens), ARF6 [TaxId: 9606]
Probab=96.00 E-value=0.0011 Score=50.05 Aligned_cols=24 Identities=33% Similarity=0.301 Sum_probs=20.3
Q ss_pred EEEECCCCCcHHHHHHHHhCCCCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLSKP 71 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~~p 71 (245)
+.++|++|+|||||++.+.+-..+
T Consensus 15 IvlvG~~~vGKTSli~rl~~~~~~ 38 (173)
T d1e0sa_ 15 ILMLGLDAAGKTTILYKLKLGQSV 38 (173)
T ss_dssp EEEEEETTSSHHHHHHHTTCCCCE
T ss_pred EEEECCCCCCHHHHHHHHhcCCCC
Confidence 679999999999999999865443
|
| >d2atva1 c.37.1.8 (A:5-172) Ras-like estrogen-regulated growth inhibitor, RERG {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-like estrogen-regulated growth inhibitor, RERG species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.99 E-value=0.0032 Score=47.08 Aligned_cols=20 Identities=40% Similarity=0.619 Sum_probs=18.0
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 035832 48 GLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~G 67 (245)
++|+|+.|+|||||++-+.+
T Consensus 5 i~lvG~~~vGKTsli~r~~~ 24 (168)
T d2atva1 5 LAIFGRAGVGKSALVVRFLT 24 (168)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHh
Confidence 68999999999999988774
|
| >d2qm8a1 c.37.1.10 (A:5-327) Metallochaperone MeaB {Methylobacterium extorquens [TaxId: 408]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Metallochaperone MeaB species: Methylobacterium extorquens [TaxId: 408]
Probab=95.99 E-value=0.0017 Score=54.61 Aligned_cols=25 Identities=32% Similarity=0.316 Sum_probs=21.6
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl 68 (245)
+.-+++|.||-|||||||+..+...
T Consensus 50 ~~~~igitG~pGaGKSTli~~l~~~ 74 (323)
T d2qm8a1 50 RAIRVGITGVPGVGKSTTIDALGSL 74 (323)
T ss_dssp CSEEEEEECCTTSCHHHHHHHHHHH
T ss_pred CceEEeeeCCCCCCHHHHHHHHHHH
Confidence 4567999999999999999988754
|
| >d1z0fa1 c.37.1.8 (A:8-173) Rab14 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab14 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.94 E-value=0.0019 Score=48.18 Aligned_cols=20 Identities=35% Similarity=0.576 Sum_probs=17.8
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 035832 48 GLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~G 67 (245)
++|+|+.|+|||||++.+.+
T Consensus 7 ivlvG~~~vGKTsli~~~~~ 26 (166)
T d1z0fa1 7 YIIIGDMGVGKSCLLHQFTE 26 (166)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987764
|
| >d1yzqa1 c.37.1.8 (A:14-177) Rab6 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab6 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.94 E-value=0.0017 Score=48.24 Aligned_cols=20 Identities=25% Similarity=0.380 Sum_probs=18.2
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 035832 48 GLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~G 67 (245)
++++|..|+|||||++.+.+
T Consensus 3 v~vvG~~~vGKTsLi~r~~~ 22 (164)
T d1yzqa1 3 LVFLGEQSVGKTSLITRFMY 22 (164)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 68999999999999998875
|
| >d1kmqa_ c.37.1.8 (A:) RhoA {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoA species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.91 E-value=0.0017 Score=49.00 Aligned_cols=21 Identities=33% Similarity=0.343 Sum_probs=18.0
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl 68 (245)
++|+|++|+|||||++.+.+-
T Consensus 5 ivvvG~~~vGKTsLi~~~~~~ 25 (177)
T d1kmqa_ 5 LVIVGDGACGKTCLLIVNSKD 25 (177)
T ss_dssp EEEEESTTSSHHHHHHHHHHS
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 678999999999999776643
|
| >d1r7ra3 c.37.1.20 (A:471-735) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.90 E-value=0.0017 Score=52.92 Aligned_cols=29 Identities=28% Similarity=0.409 Sum_probs=23.8
Q ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCC
Q 035832 42 LPEKSFGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 42 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
+....-+.|.||+|+|||+|.+.+++.+.
T Consensus 38 ~~~~~giLL~Gp~GtGKT~l~~ala~~~~ 66 (265)
T d1r7ra3 38 MTPSKGVLFYGPPGCGKTLLAKAIANECQ 66 (265)
T ss_dssp CCCCCEEEEBCCTTSSHHHHHHHHHHHTT
T ss_pred CCCCCeEEEECCCCCcchhHHHHHHHHhC
Confidence 33445588999999999999999998763
|
| >d1z08a1 c.37.1.8 (A:17-183) Rab21 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab21 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.89 E-value=0.0016 Score=48.64 Aligned_cols=20 Identities=25% Similarity=0.388 Sum_probs=17.6
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 035832 48 GLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~G 67 (245)
++|+|..|+|||||++-+.+
T Consensus 6 ivlvG~~~vGKTsLi~r~~~ 25 (167)
T d1z08a1 6 VVLLGEGCVGKTSLVLRYCE 25 (167)
T ss_dssp EEEECCTTSCHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67999999999999997654
|
| >d1x3sa1 c.37.1.8 (A:2-178) Rab18 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab18 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.88 E-value=0.0016 Score=49.24 Aligned_cols=20 Identities=45% Similarity=0.650 Sum_probs=18.2
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 035832 48 GLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~G 67 (245)
++++|+.|+|||||++.+.+
T Consensus 10 i~vvG~~~vGKTsli~~l~~ 29 (177)
T d1x3sa1 10 ILIIGESGVGKSSLLLRFTD 29 (177)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 77999999999999998775
|
| >d1xpua3 c.37.1.11 (A:129-417) Transcription termination factor Rho, ATPase domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Transcription termination factor Rho, ATPase domain species: Escherichia coli [TaxId: 562]
Probab=95.88 E-value=0.0018 Score=53.63 Aligned_cols=30 Identities=33% Similarity=0.329 Sum_probs=26.7
Q ss_pred EEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 40 FSLPEKSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 40 l~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
+.|.+|+..+|+|++|+|||||+..|+.-.
T Consensus 38 ~PigrGQr~~I~g~~g~GKT~l~~~i~~~~ 67 (289)
T d1xpua3 38 SPIGRGQRGLIVAPPKAGKTMLLQNIAQSI 67 (289)
T ss_dssp SCCBTTCEEEEEECSSSSHHHHHHHHHHHH
T ss_pred ccccCCCeeeEeCCCCCCHHHHHHHHHHHH
Confidence 678899999999999999999999887643
|
| >d1ixza_ c.37.1.20 (A:) AAA domain of cell division protein FtsH {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: AAA domain of cell division protein FtsH species: Thermus thermophilus [TaxId: 274]
Probab=95.84 E-value=0.0021 Score=51.93 Aligned_cols=22 Identities=41% Similarity=0.599 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
+.+.||.|+|||+|.+.|+...
T Consensus 45 iLl~GppGtGKT~la~aia~~~ 66 (247)
T d1ixza_ 45 VLLVGPPGVGKTHLARAVAGEA 66 (247)
T ss_dssp EEEECCTTSSHHHHHHHHHHHT
T ss_pred EEEecCCCCChhHHHHHHHHHc
Confidence 7899999999999999999643
|
| >d1i2ma_ c.37.1.8 (A:) Ran {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ran species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.81 E-value=0.0013 Score=49.48 Aligned_cols=21 Identities=29% Similarity=0.389 Sum_probs=17.4
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl 68 (245)
++++|+.|+|||||++.+++-
T Consensus 6 i~vvG~~~vGKTsli~~~~~~ 26 (170)
T d1i2ma_ 6 LVLVGDGGTGKTTFVKRHLTG 26 (170)
T ss_dssp EEEEECTTSSHHHHHHTTC--
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999977654
|
| >d2bcgy1 c.37.1.8 (Y:3-196) GTPase Ytp1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTPase Ytp1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.78 E-value=0.002 Score=49.47 Aligned_cols=20 Identities=40% Similarity=0.605 Sum_probs=17.9
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 035832 48 GLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~G 67 (245)
++|+|+.|+|||||++.+.+
T Consensus 9 ivvvG~~~vGKTsli~~l~~ 28 (194)
T d2bcgy1 9 LLLIGNSGVGKSCLLLRFSD 28 (194)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHhh
Confidence 78999999999999997664
|
| >d2fn4a1 c.37.1.8 (A:24-196) r-Ras {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: r-Ras species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.76 E-value=0.0022 Score=48.28 Aligned_cols=20 Identities=25% Similarity=0.393 Sum_probs=17.7
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 035832 48 GLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~G 67 (245)
++|+|..|+|||||++-+.+
T Consensus 9 v~lvG~~~vGKTsLi~r~~~ 28 (173)
T d2fn4a1 9 LVVVGGGGVGKSALTIQFIQ 28 (173)
T ss_dssp EEEEECTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999987654
|
| >d2bmea1 c.37.1.8 (A:6-179) Rab4a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab4a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.74 E-value=0.0018 Score=48.73 Aligned_cols=20 Identities=35% Similarity=0.630 Sum_probs=18.0
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 035832 48 GLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~G 67 (245)
++++|..|+|||||++.+.+
T Consensus 8 I~lvG~~~vGKTsll~~~~~ 27 (174)
T d2bmea1 8 FLVIGNAGTGKSCLLHQFIE 27 (174)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999998764
|
| >d1ek0a_ c.37.1.8 (A:) Ypt51 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ypt51 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=95.74 E-value=0.002 Score=48.23 Aligned_cols=20 Identities=15% Similarity=0.433 Sum_probs=17.4
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 035832 48 GLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~G 67 (245)
++++|+.|+|||||++-+.+
T Consensus 6 i~vvG~~~vGKTsLi~~~~~ 25 (170)
T d1ek0a_ 6 LVLLGEAAVGKSSIVLRFVS 25 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67999999999999986554
|
| >d1mh1a_ c.37.1.8 (A:) Rac {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rac species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.73 E-value=0.0025 Score=48.35 Aligned_cols=21 Identities=29% Similarity=0.338 Sum_probs=18.0
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~G 67 (245)
.++|+|..|+|||||++.+.+
T Consensus 7 KivviG~~~vGKTsli~~~~~ 27 (183)
T d1mh1a_ 7 KCVVVGDGAVGKTCLLISYTT 27 (183)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHh
Confidence 378999999999999977654
|
| >d1w5sa2 c.37.1.20 (A:7-293) CDC6-like protein APE0152, N-terminal domain {Aeropyrum pernix [TaxId: 56636]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CDC6-like protein APE0152, N-terminal domain species: Aeropyrum pernix [TaxId: 56636]
Probab=95.72 E-value=0.0017 Score=51.94 Aligned_cols=23 Identities=35% Similarity=0.328 Sum_probs=19.7
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
++.|.||.|+||||+++.++..+
T Consensus 48 ~l~l~GppGtGKT~l~~~l~~~l 70 (287)
T d1w5sa2 48 IYGSIGRVGIGKTTLAKFTVKRV 70 (287)
T ss_dssp EEECTTCCSSSHHHHHHHHHHHH
T ss_pred EEEeECCCCCCHHHHHHHHHHHH
Confidence 45667999999999999998765
|
| >d2fu5c1 c.37.1.8 (C:3-175) Rab8a {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab8a species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.71 E-value=0.0015 Score=49.14 Aligned_cols=21 Identities=38% Similarity=0.455 Sum_probs=8.4
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl 68 (245)
++|+|..|+|||||++.+++-
T Consensus 9 i~vvG~~~vGKTsLi~~l~~~ 29 (173)
T d2fu5c1 9 LLLIGDSGVGKTCVLFRFSED 29 (173)
T ss_dssp EEEECCCCC------------
T ss_pred EEEECCCCcCHHHHHHHHHhC
Confidence 789999999999999877653
|
| >d1g8pa_ c.37.1.20 (A:) ATPase subunit of magnesium chelatase, BchI {Rhodobacter capsulatus [TaxId: 1061]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ATPase subunit of magnesium chelatase, BchI species: Rhodobacter capsulatus [TaxId: 1061]
Probab=95.69 E-value=0.0011 Score=55.68 Aligned_cols=26 Identities=38% Similarity=0.547 Sum_probs=23.6
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCCC
Q 035832 46 SFGLIFGRSGSGKTTLLQLLAGLSKP 71 (245)
Q Consensus 46 e~~~liG~nGsGKSTLl~~l~Gl~~p 71 (245)
.-+.|.||.|+|||||+|.++++++|
T Consensus 29 h~vLl~G~pG~GKT~lar~~~~iLp~ 54 (333)
T d1g8pa_ 29 GGVLVFGDRGTGKSTAVRALAALLPE 54 (333)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred CeEEEECCCCccHHHHHHHHHHhCCC
Confidence 35789999999999999999999976
|
| >d1e32a2 c.37.1.20 (A:201-458) Membrane fusion ATPase VCP/p97 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Membrane fusion ATPase VCP/p97 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.66 E-value=0.0027 Score=51.44 Aligned_cols=32 Identities=25% Similarity=0.495 Sum_probs=24.5
Q ss_pred eeeeEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 36 NGVSFSLPEKSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 36 ~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
+...+..++| +.|.||.|+|||+|.+.++...
T Consensus 31 ~~~g~~~~~g--iLL~GppGtGKT~l~~ala~~~ 62 (258)
T d1e32a2 31 KAIGVKPPRG--ILLYGPPGTGKTLIARAVANET 62 (258)
T ss_dssp HHCCCCCCCE--EEEECCTTSSHHHHHHHHHHHT
T ss_pred HhCCCCCCce--eEEecCCCCCchHHHHHHHHHh
Confidence 3333444455 7899999999999999999854
|
| >d1r2qa_ c.37.1.8 (A:) Rab5a {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab5a species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.65 E-value=0.003 Score=47.26 Aligned_cols=20 Identities=25% Similarity=0.446 Sum_probs=17.8
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 035832 48 GLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~G 67 (245)
++++|+.|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsLi~~l~~ 28 (170)
T d1r2qa_ 9 LVLLGESAVGKSSLVLRFVK 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 67999999999999988773
|
| >d1svsa1 c.37.1.8 (A:32-60,A:182-347) Transducin (alpha subunit) {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.65 E-value=0.0024 Score=48.24 Aligned_cols=29 Identities=24% Similarity=0.470 Sum_probs=24.2
Q ss_pred EEEECCCCCcHHHHHHHHhCCCCCCcceE
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLSKPTSGSI 76 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~~p~~G~i 76 (245)
+.|+|..|+|||||++-+..-..|+.|..
T Consensus 5 ivllG~~~vGKTsl~~r~~~~~~~t~~~~ 33 (195)
T d1svsa1 5 LLLLGAGESGKSTIVKQMKIIHEAGTGIV 33 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHSCCCSEE
T ss_pred EEEECCCCCCHHHHHHHHhhCCCCCccEE
Confidence 67999999999999998876667777743
|
| >d1x1ra1 c.37.1.8 (A:10-178) Ras-related protein M-Ras (XRas) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein M-Ras (XRas) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.65 E-value=0.0023 Score=48.03 Aligned_cols=20 Identities=25% Similarity=0.380 Sum_probs=17.6
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 035832 48 GLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~G 67 (245)
++++|+.|+|||||++-+.+
T Consensus 7 i~lvG~~~vGKTsll~~~~~ 26 (169)
T d1x1ra1 7 LVVVGDGGVGKSALTIQFFQ 26 (169)
T ss_dssp EEEECCTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 57899999999999997764
|
| >d1zcba2 c.37.1.8 (A:47-75,A:202-372) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.60 E-value=0.0029 Score=48.20 Aligned_cols=27 Identities=37% Similarity=0.615 Sum_probs=21.6
Q ss_pred EEEECCCCCcHHHHHHHHhCC--CCCCcc
Q 035832 48 GLIFGRSGSGKTTLLQLLAGL--SKPTSG 74 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl--~~p~~G 74 (245)
+.|+|.+|+|||||++-+.-. ..||-|
T Consensus 5 ivllG~~~vGKTsll~r~~f~~~~~pTiG 33 (200)
T d1zcba2 5 ILLLGAGESGKSTFLKQMRIIHGQDPTKG 33 (200)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHSCCCCSS
T ss_pred EEEECCCCCCHHHHHHHHhcCCCCCCeee
Confidence 679999999999999887422 357777
|
| >d1f5na2 c.37.1.8 (A:7-283) Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Interferon-induced guanylate-binding protein 1 (GBP1), N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.59 E-value=0.0027 Score=52.14 Aligned_cols=24 Identities=33% Similarity=0.383 Sum_probs=22.0
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Q 035832 46 SFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 46 e~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
-+++|+||-++||||||+.|.|..
T Consensus 33 ~vvsi~G~~~sGKS~llN~l~~~~ 56 (277)
T d1f5na2 33 VVVAIVGLYRTGKSYLMNKLAGKK 56 (277)
T ss_dssp EEEEEEEBTTSSHHHHHHHHTTCS
T ss_pred EEEEEECCCCCCHHHHHHHHcCCC
Confidence 479999999999999999999865
|
| >d1g41a_ c.37.1.20 (A:) HslU {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: HslU species: Haemophilus influenzae [TaxId: 727]
Probab=95.58 E-value=0.0019 Score=56.60 Aligned_cols=33 Identities=30% Similarity=0.403 Sum_probs=25.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCc
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGY 81 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~ 81 (245)
-+.++||+|||||-|.|.|++++.. =-+..+..
T Consensus 51 NILliGPTGvGKTlLAr~LAk~l~V--PFv~~daT 83 (443)
T d1g41a_ 51 NILMIGPTGVGKTEIARRLAKLANA--PFIKVEAT 83 (443)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTC--CEEEEEGG
T ss_pred cEEEECCCCCCHHHHHHHHHHHhCC--CEEEeecc
Confidence 4678999999999999999997732 14555443
|
| >d1p9ra_ c.37.1.11 (A:) Extracellular secretion NTPase EpsE {Vibrio cholerae [TaxId: 666]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Extracellular secretion NTPase EpsE species: Vibrio cholerae [TaxId: 666]
Probab=95.54 E-value=0.0024 Score=55.17 Aligned_cols=26 Identities=31% Similarity=0.258 Sum_probs=22.7
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
+.-++.+.||.||||||++..+...+
T Consensus 157 ~~GliLvtGpTGSGKSTTl~~~l~~~ 182 (401)
T d1p9ra_ 157 PHGIILVTGPTGSGKSTTLYAGLQEL 182 (401)
T ss_dssp SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred hhceEEEEcCCCCCccHHHHHHhhhh
Confidence 56689999999999999999987754
|
| >d1kk1a3 c.37.1.8 (A:6-200) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Archaeon Pyrococcus abyssi [TaxId: 29292]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Archaeon Pyrococcus abyssi [TaxId: 29292]
Probab=95.54 E-value=0.004 Score=47.85 Aligned_cols=22 Identities=36% Similarity=0.415 Sum_probs=20.3
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
+||+|.-.+|||||++.|+|..
T Consensus 8 IaiiGhvd~GKSTL~~~L~g~~ 29 (195)
T d1kk1a3 8 IGMVGHVDHGKTTLTKALTGVW 29 (195)
T ss_dssp EEEECSTTSSHHHHHHHHHTCC
T ss_pred EEEEeccCCcHHHHHHHHHhhh
Confidence 7999999999999999999864
|
| >d1c1ya_ c.37.1.8 (A:) Rap1A {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rap1A species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.50 E-value=0.0035 Score=46.73 Aligned_cols=20 Identities=25% Similarity=0.459 Sum_probs=17.5
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 035832 48 GLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~G 67 (245)
++++|..|+|||||++-+..
T Consensus 6 ivvvG~~~vGKTsli~r~~~ 25 (167)
T d1c1ya_ 6 LVVLGSGGVGKSALTVQFVQ 25 (167)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHc
Confidence 67999999999999987653
|
| >d1deka_ c.37.1.1 (A:) Deoxynucleoside monophosphate kinase {Bacteriophage T4 [TaxId: 10665]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxynucleoside monophosphate kinase species: Bacteriophage T4 [TaxId: 10665]
Probab=95.50 E-value=0.0037 Score=49.48 Aligned_cols=21 Identities=24% Similarity=0.328 Sum_probs=19.3
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~G 67 (245)
++||.|+-||||||..+.|..
T Consensus 3 iIgiTG~igSGKsTva~~l~e 23 (241)
T d1deka_ 3 LIFLSGVKRSGKDTTADFIMS 23 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH
Confidence 789999999999999999953
|
| >d2g6ba1 c.37.1.8 (A:58-227) Rab26 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Rab26 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.49 E-value=0.0035 Score=46.86 Aligned_cols=20 Identities=40% Similarity=0.572 Sum_probs=17.4
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 035832 48 GLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~G 67 (245)
++|+|+.|+|||||++.+.+
T Consensus 9 i~vvG~~~vGKTsli~~~~~ 28 (170)
T d2g6ba1 9 VMLVGDSGVGKTCLLVRFKD 28 (170)
T ss_dssp EEEECSTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999986543
|
| >d1ko7a2 c.91.1.2 (A:130-298) HPr kinase HprK C-terminal domain {Staphylococcus xylosus [TaxId: 1288]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: HPr kinase HprK C-terminal domain domain: HPr kinase HprK C-terminal domain species: Staphylococcus xylosus [TaxId: 1288]
Probab=95.48 E-value=0.0062 Score=46.27 Aligned_cols=32 Identities=34% Similarity=0.283 Sum_probs=24.4
Q ss_pred eeeeeeEEEcCCCEEEEECCCCCcHHHHHHHHh
Q 035832 34 ILNGVSFSLPEKSFGLIFGRSGSGKTTLLQLLA 66 (245)
Q Consensus 34 il~~vsl~i~~Ge~~~liG~nGsGKSTLl~~l~ 66 (245)
.++..-+.+ .|.-+.|.|++|+|||||.-.+.
T Consensus 5 ~~H~~~v~~-~g~gvli~G~sg~GKS~la~~l~ 36 (169)
T d1ko7a2 5 SLHGVLVDV-YGVGVLITGDSGIGKSETALELI 36 (169)
T ss_dssp EEESEEEEE-TTEEEEEEESTTSSHHHHHHHHH
T ss_pred eEEEEEEEE-CCEEEEEEeCCCCCHHHHHHHHH
Confidence 456655665 57889999999999999885543
|
| >d1u8za_ c.37.1.8 (A:) Ras-related protein RalA {Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Ras-related protein RalA species: Cotton-top tamarin (Saguinus oedipus) [TaxId: 9490]
Probab=95.48 E-value=0.0036 Score=46.86 Aligned_cols=21 Identities=24% Similarity=0.317 Sum_probs=18.0
Q ss_pred EEEEECCCCCcHHHHHHHHhC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~G 67 (245)
.++|+|..|+|||||++.+.+
T Consensus 6 KivlvG~~~vGKTsli~~~~~ 26 (168)
T d1u8za_ 6 KVIMVGSGGVGKSALTLQFMY 26 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred EEEEECCCCcCHHHHHHHHHh
Confidence 367999999999999988653
|
| >d2bmja1 c.37.1.8 (A:66-240) Centaurin gamma 1, G domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Centaurin gamma 1, G domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.46 E-value=0.0029 Score=47.98 Aligned_cols=21 Identities=24% Similarity=0.300 Sum_probs=18.2
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl 68 (245)
++++|+.|+|||||++.+.+-
T Consensus 8 i~vlG~~~vGKTsLi~~~~~~ 28 (175)
T d2bmja1 8 LGVLGDARSGKSSLIHRFLTG 28 (175)
T ss_dssp EEEECCTTTTHHHHHHHHHHS
T ss_pred EEEECCCCCCHHHHHHHHHhC
Confidence 789999999999999966553
|
| >d2atxa1 c.37.1.8 (A:9-193) RhoQ {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoQ species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.46 E-value=0.0033 Score=47.86 Aligned_cols=19 Identities=37% Similarity=0.497 Sum_probs=17.0
Q ss_pred EEEECCCCCcHHHHHHHHh
Q 035832 48 GLIFGRSGSGKTTLLQLLA 66 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~ 66 (245)
++|+|..|+|||||++.+.
T Consensus 12 i~lvG~~~vGKTsLi~r~~ 30 (185)
T d2atxa1 12 CVVVGDGAVGKTCLLMSYA 30 (185)
T ss_dssp EEEEECTTSSHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHh
Confidence 7899999999999997755
|
| >d1azta2 c.37.1.8 (A:35-65,A:202-391) Transducin (alpha subunit) {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Cow (Bos taurus) [TaxId: 9913]
Probab=95.44 E-value=0.0035 Score=49.31 Aligned_cols=28 Identities=32% Similarity=0.350 Sum_probs=21.7
Q ss_pred EEEEECCCCCcHHHHHHHH-hCCCCCCcc
Q 035832 47 FGLIFGRSGSGKTTLLQLL-AGLSKPTSG 74 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l-~Gl~~p~~G 74 (245)
.+.|+|++|+|||||++-+ .+-..|+-|
T Consensus 8 KilllG~~~vGKTsll~~~~~~~~~pTiG 36 (221)
T d1azta2 8 RLLLLGAGESGKSTIVKQMRILHVVLTSG 36 (221)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCcCCCCC
Confidence 3679999999999999765 444557766
|
| >d1u94a1 c.37.1.11 (A:6-268) RecA protein, ATPase-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Escherichia coli [TaxId: 562]
Probab=95.43 E-value=0.0048 Score=50.22 Aligned_cols=28 Identities=36% Similarity=0.427 Sum_probs=23.5
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCC
Q 035832 41 SLPEKSFGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 41 ~i~~Ge~~~liG~nGsGKSTLl~~l~Gl 68 (245)
=+++|.++-|.||+|||||||+-.++..
T Consensus 50 Gi~~g~itei~G~~gsGKTtl~l~~~~~ 77 (263)
T d1u94a1 50 GLPMGRIVEIYGPESSGKTTLTLQVIAA 77 (263)
T ss_dssp SEETTSEEEEECSTTSSHHHHHHHHHHH
T ss_pred CccCceEEEEecCCCcHHHHHHHHHHHH
Confidence 4679999999999999999998655544
|
| >d1m7ba_ c.37.1.8 (A:) RhoE (RND3) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: RhoE (RND3) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=95.32 E-value=0.0038 Score=47.31 Aligned_cols=19 Identities=42% Similarity=0.639 Sum_probs=16.3
Q ss_pred EEEECCCCCcHHHHHHHHh
Q 035832 48 GLIFGRSGSGKTTLLQLLA 66 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~ 66 (245)
++++|.+|+|||||++-+.
T Consensus 5 ivliG~~~vGKTsli~r~~ 23 (179)
T d1m7ba_ 5 IVVVGDSQCGKTALLHVFA 23 (179)
T ss_dssp EEEEESTTSSHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHH
Confidence 6799999999999996553
|
| >d1wxqa1 c.37.1.8 (A:1-319) GTP-binding protein PH0525 {Pyrococcus horikoshii [TaxId: 53953]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: GTP-binding protein PH0525 species: Pyrococcus horikoshii [TaxId: 53953]
Probab=95.17 E-value=0.0045 Score=51.32 Aligned_cols=22 Identities=18% Similarity=0.267 Sum_probs=19.4
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
+||+|..-+|||||++.|+|.-
T Consensus 3 v~lvG~pn~GKStlfn~lt~~~ 24 (319)
T d1wxqa1 3 IGVVGKPNVGKSTFFSAATLVD 24 (319)
T ss_dssp EEEEECTTSSHHHHHHHHHC--
T ss_pred EeEECCCCCCHHHHHHHHHCCC
Confidence 7999999999999999999864
|
| >d2ocpa1 c.37.1.1 (A:37-277) Deoxyguanosine kinase {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Deoxyguanosine kinase species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.17 E-value=0.0045 Score=48.78 Aligned_cols=25 Identities=28% Similarity=0.236 Sum_probs=21.8
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCC
Q 035832 46 SFGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 46 e~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
.+++|=|+=||||||+++.|.--+.
T Consensus 3 k~IviEG~~GsGKST~~~~L~~~l~ 27 (241)
T d2ocpa1 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHh
Confidence 4789999999999999999986553
|
| >d2ngra_ c.37.1.8 (A:) CDC42 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: CDC42 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.15 E-value=0.0046 Score=47.20 Aligned_cols=20 Identities=30% Similarity=0.410 Sum_probs=17.0
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 035832 48 GLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~G 67 (245)
++|+|+.|+|||||++.+.+
T Consensus 6 vvllG~~~vGKTSli~r~~~ 25 (191)
T d2ngra_ 6 CVVVGDGAVGKTCLLISYTT 25 (191)
T ss_dssp EEEEESTTSSHHHHHHHHHH
T ss_pred EEEECCCCcCHHHHHHHHHh
Confidence 78999999999999966543
|
| >d2akab1 c.37.1.8 (B:6-304) Dynamin G domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=95.10 E-value=0.0046 Score=50.63 Aligned_cols=22 Identities=23% Similarity=0.442 Sum_probs=20.7
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
++++|.-.||||||+++|+|.-
T Consensus 29 ivvvG~~SsGKSsliNaLlg~~ 50 (299)
T d2akab1 29 IAVVGGQSAGKSSVLENFVGRD 50 (299)
T ss_dssp EEEEEBTTSCHHHHHHHHHTSC
T ss_pred EEEEcCCCCCHHHHHHHHhCCC
Confidence 7799999999999999999976
|
| >d1r6bx3 c.37.1.20 (X:437-751) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=95.03 E-value=0.0061 Score=50.79 Aligned_cols=34 Identities=21% Similarity=0.108 Sum_probs=26.4
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEcCc
Q 035832 46 SFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIRGY 81 (245)
Q Consensus 46 e~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~ 81 (245)
..+.++||+|+|||.|.+.|+-.+. .--|.++--
T Consensus 53 ~~~lf~Gp~GvGKT~lak~la~~l~--~~~i~~d~s 86 (315)
T d1r6bx3 53 GSFLFAGPTGVGKTEVTVQLSKALG--IELLRFDMS 86 (315)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHT--CEEEEEEGG
T ss_pred eEEEEECCCcchhHHHHHHHHhhcc--CCeeEeccc
Confidence 3688999999999999999998763 235566543
|
| >d1jwyb_ c.37.1.8 (B:) Dynamin G domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Dynamin G domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=94.94 E-value=0.0072 Score=49.65 Aligned_cols=26 Identities=27% Similarity=0.466 Sum_probs=22.4
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC-CC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLSK-PT 72 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~~-p~ 72 (245)
-++++|.-.||||||+++|+|.-- |.
T Consensus 26 ~ivVvG~~ssGKSSliNaLlG~~~lP~ 52 (306)
T d1jwyb_ 26 QIVVVGSQSSGKSSVLENIVGRDFLPR 52 (306)
T ss_dssp EEEEEECSSSSHHHHHHHHHTSCCCCC
T ss_pred eEEEEeCCCCCHHHHHHHHhCCCCCCC
Confidence 378999999999999999999763 43
|
| >d1mo6a1 c.37.1.11 (A:1-269) RecA protein, ATPase-domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=94.94 E-value=0.0039 Score=51.01 Aligned_cols=27 Identities=33% Similarity=0.406 Sum_probs=23.2
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhC
Q 035832 41 SLPEKSFGLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 41 ~i~~Ge~~~liG~nGsGKSTLl~~l~G 67 (245)
=++.|.++-|.||+|||||||+-.++.
T Consensus 56 G~~~g~i~e~~G~~~~GKT~l~l~~~~ 82 (269)
T d1mo6a1 56 GLPRGRVIEIYGPESSGKTTVALHAVA 82 (269)
T ss_dssp SBCSSSEEEEECSSSSSHHHHHHHHHH
T ss_pred CcccceeEEEecCCCcHHHHHHHHHHH
Confidence 568999999999999999999755554
|
| >d1ni3a1 c.37.1.8 (A:11-306) YchF GTP-binding protein N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=94.90 E-value=0.0056 Score=50.41 Aligned_cols=22 Identities=23% Similarity=0.314 Sum_probs=20.5
Q ss_pred EEEECCCCCcHHHHHHHHhCCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
+||+|..-|||||||++|++--
T Consensus 13 iGivG~Pn~GKSTlfnalT~~~ 34 (296)
T d1ni3a1 13 TGIVGMPNVGKSTFFRAITKSV 34 (296)
T ss_dssp EEEEECSSSSHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHCCC
Confidence 8999999999999999999763
|
| >d2bcjq2 c.37.1.8 (Q:38-66,Q:184-354) Transducin (alpha subunit) {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Transducin (alpha subunit) species: Mouse (Mus musculus) [TaxId: 10090]
Probab=94.61 E-value=0.0078 Score=45.46 Aligned_cols=27 Identities=33% Similarity=0.599 Sum_probs=20.7
Q ss_pred EEEECCCCCcHHHHHHHHhCC---CCCCcc
Q 035832 48 GLIFGRSGSGKTTLLQLLAGL---SKPTSG 74 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl---~~p~~G 74 (245)
+.|+|..|+|||||++-+..- ..|+-|
T Consensus 5 iv~lG~~~vGKTsll~r~~~~~~~~~pTiG 34 (200)
T d2bcjq2 5 LLLLGTGESGKSTFIKQMRIIHGSGVPTTG 34 (200)
T ss_dssp EEEEESTTSSHHHHHHHHHHHTSSCCCCCS
T ss_pred EEEECCCCCCHHHHHHHHhCCCCCCCceee
Confidence 679999999999999887543 235555
|
| >d1svma_ c.37.1.20 (A:) Papillomavirus large T antigen helicase domain {Simian virus 40 [TaxId: 10633]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Papillomavirus large T antigen helicase domain species: Simian virus 40 [TaxId: 10633]
Probab=94.52 E-value=0.01 Score=50.42 Aligned_cols=30 Identities=40% Similarity=0.509 Sum_probs=26.9
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCCC
Q 035832 41 SLPEKSFGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 41 ~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
.++++..+++.||.|+||||+.+.|++.+.
T Consensus 150 ~~~~~~~~~~~g~~~~gk~~~~~~~~~~~~ 179 (362)
T d1svma_ 150 NIPKKRYWLFKGPIDSGKTTLAAALLELCG 179 (362)
T ss_dssp CCTTCCEEEEECSTTSSHHHHHHHHHHHHC
T ss_pred CCCCcCeEEEECCCCCCHHHHHHHHHHHcC
Confidence 457888999999999999999999998874
|
| >d1xp8a1 c.37.1.11 (A:15-282) RecA protein, ATPase-domain {Deinococcus radiodurans [TaxId: 1299]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: RecA protein, ATPase-domain species: Deinococcus radiodurans [TaxId: 1299]
Probab=94.52 E-value=0.011 Score=48.15 Aligned_cols=29 Identities=28% Similarity=0.467 Sum_probs=25.0
Q ss_pred EEcCCCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 41 SLPEKSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 41 ~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
=++.|.++-|.||+|||||||.-.++...
T Consensus 53 Gip~g~itei~G~~~sGKT~l~l~~~~~a 81 (268)
T d1xp8a1 53 GIPRGRITEIYGPESGGKTTLALAIVAQA 81 (268)
T ss_dssp SEETTSEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CccCceEEEEecCCccchHHHHHHHHHHH
Confidence 46799999999999999999997777654
|
| >d2jdid3 c.37.1.11 (D:82-357) Central domain of beta subunit of F1 ATP synthase {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of beta subunit of F1 ATP synthase species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=94.50 E-value=0.0096 Score=48.73 Aligned_cols=29 Identities=28% Similarity=0.296 Sum_probs=25.1
Q ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHhC
Q 035832 39 SFSLPEKSFGLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 39 sl~i~~Ge~~~liG~nGsGKSTLl~~l~G 67 (245)
=+.+-+|+..+|+|+.|+|||||+..++-
T Consensus 62 l~pigkGQr~~If~~~g~GKt~l~~~i~~ 90 (276)
T d2jdid3 62 LAPYAKGGKIGLFGGAGVGKTVLIMELIN 90 (276)
T ss_dssp HSCEETTCEEEEEECTTSSHHHHHHHHHH
T ss_pred eccccCCCEEEeeCCCCCCHHHHHHHHHH
Confidence 36788999999999999999999766653
|
| >d1nija1 c.37.1.10 (A:2-223) Hypothetical protein YjiA, N-terminal domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nitrogenase iron protein-like domain: Hypothetical protein YjiA, N-terminal domain species: Escherichia coli [TaxId: 562]
Probab=94.48 E-value=0.0074 Score=47.63 Aligned_cols=22 Identities=41% Similarity=0.519 Sum_probs=19.2
Q ss_pred EEEEECCCCCcHHHHHHHHhCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl 68 (245)
++.|.|.=|||||||++-+..-
T Consensus 5 v~iitGFLGaGKTTll~~lL~~ 26 (222)
T d1nija1 5 VTLLTGFLGAGKTTLLRHILNE 26 (222)
T ss_dssp EEEEEESSSSSCHHHHHHHHHS
T ss_pred EEEEeeCCCCCHHHHHHHHHhc
Confidence 6789999999999999888763
|
| >d2dy1a2 c.37.1.8 (A:8-274) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus, EF-G-2 [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus, EF-G-2 [TaxId: 274]
Probab=94.42 E-value=0.0087 Score=48.75 Aligned_cols=23 Identities=43% Similarity=0.601 Sum_probs=19.6
Q ss_pred EEEEECCCCCcHHHHHHHH---hCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLL---AGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l---~Gl~ 69 (245)
-++|+|+.|||||||+..| +|..
T Consensus 4 Nv~iiGh~~~GKTtL~e~ll~~~g~~ 29 (267)
T d2dy1a2 4 TVALVGHAGSGKTTLTEALLYKTGAK 29 (267)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHTTSS
T ss_pred EEEEEcCCCCcHHHHHHHHHHHcCCc
Confidence 3789999999999999988 5554
|
| >d2qn6a3 c.37.1.8 (A:2-206) Initiation factor eIF2 gamma subunit, N-terminal (G) domain {Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Initiation factor eIF2 gamma subunit, N-terminal (G) domain species: Sulfolobus solfataricus [TaxId: 2287]
Probab=94.36 E-value=0.013 Score=45.26 Aligned_cols=24 Identities=33% Similarity=0.404 Sum_probs=21.3
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
-+||+|.=.+|||||++.|+|...
T Consensus 10 ni~iiGhVd~GKSTL~~~L~~~~~ 33 (205)
T d2qn6a3 10 NIGVVGHVDHGKTTLVQAITGIWT 33 (205)
T ss_dssp EEEEECSTTSSHHHHHHHHHSCCC
T ss_pred EEEEEEccCCcHHHHHHHHHhhhc
Confidence 389999999999999999998654
|
| >d1l8qa2 c.37.1.20 (A:77-289) Chromosomal replication initiation factor DnaA {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Chromosomal replication initiation factor DnaA species: Aquifex aeolicus [TaxId: 63363]
Probab=94.35 E-value=0.01 Score=46.46 Aligned_cols=21 Identities=43% Similarity=0.612 Sum_probs=18.7
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl 68 (245)
+.|.||+|+|||-|+++++--
T Consensus 39 l~l~G~~G~GKTHLl~A~~~~ 59 (213)
T d1l8qa2 39 IFIYGSVGTGKTHLLQAAGNE 59 (213)
T ss_dssp EEEECSSSSSHHHHHHHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHHH
Confidence 679999999999999999753
|
| >d2c78a3 c.37.1.8 (A:9-212) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=94.25 E-value=0.012 Score=45.82 Aligned_cols=19 Identities=37% Similarity=0.344 Sum_probs=17.8
Q ss_pred EEEECCCCCcHHHHHHHHh
Q 035832 48 GLIFGRSGSGKTTLLQLLA 66 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~ 66 (245)
++++|.-+||||||+..|.
T Consensus 6 i~iiGhvd~GKSTL~~~Ll 24 (204)
T d2c78a3 6 VGTIGHVDHGKTTLTAALT 24 (204)
T ss_dssp EEEECSTTSSHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHH
Confidence 7899999999999999985
|
| >d1njfa_ c.37.1.20 (A:) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=94.22 E-value=0.012 Score=46.69 Aligned_cols=43 Identities=16% Similarity=0.263 Sum_probs=33.3
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhHH
Q 035832 179 PDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKEM 222 (245)
Q Consensus 179 p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~~ 222 (245)
.+++|+||.= .|....+..+++.+.+......+|++|++.+-+
T Consensus 116 ~kviiIde~d-~l~~~~q~~Llk~lE~~~~~~~~il~tn~~~~i 158 (239)
T d1njfa_ 116 FKVYLIDEVH-MLSRHSFNALLKTLEEPPEHVKFLLATTDPQKL 158 (239)
T ss_dssp SEEEEEETGG-GSCHHHHHHHHHHHHSCCTTEEEEEEESCGGGS
T ss_pred CEEEEEECcc-cCCHHHHHHHHHHHhcCCCCeEEEEEcCCcccc
Confidence 4599999985 488888888888877655557899999886543
|
| >d1a5ta2 c.37.1.20 (A:1-207) delta prime subunit of DNA polymerase III, N-domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: delta prime subunit of DNA polymerase III, N-domain species: Escherichia coli [TaxId: 562]
Probab=94.05 E-value=0.014 Score=45.40 Aligned_cols=42 Identities=14% Similarity=0.166 Sum_probs=32.1
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhH
Q 035832 179 PDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKE 221 (245)
Q Consensus 179 p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~ 221 (245)
.+++|+||. -.|...++..+++.+.+..+..-+|++|++.+-
T Consensus 109 ~kviIide~-d~l~~~a~n~Llk~lEep~~~~~fIl~t~~~~~ 150 (207)
T d1a5ta2 109 AKVVWVTDA-ALLTDAAANALLKTLEEPPAETWFFLATREPER 150 (207)
T ss_dssp CEEEEESCG-GGBCHHHHHHHHHHHTSCCTTEEEEEEESCGGG
T ss_pred cceEEechh-hhhhhhhhHHHHHHHHhhcccceeeeeecChhh
Confidence 679999985 456677888888777776555678889998764
|
| >d2bv3a2 c.37.1.8 (A:7-282) Elongation factor G (EF-G), N-terminal (G) domain {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor G (EF-G), N-terminal (G) domain species: Thermus thermophilus [TaxId: 274]
Probab=93.96 E-value=0.013 Score=48.01 Aligned_cols=25 Identities=24% Similarity=0.108 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHH---hCCCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLL---AGLSKP 71 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l---~Gl~~p 71 (245)
-++|+|+.|||||||...| +|....
T Consensus 8 ni~i~gh~~~GKTtL~e~ll~~~g~~~~ 35 (276)
T d2bv3a2 8 NIGIAAHIDAGKTTTTERILYYTGRIHK 35 (276)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTSSCC
T ss_pred EEEEEeCCCCCHHHHHHHHHHhcCcccc
Confidence 3799999999999999888 566543
|
| >d1jala1 c.37.1.8 (A:1-278) YchF GTP-binding protein N-terminal domain {Haemophilus influenzae [TaxId: 727]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: YchF GTP-binding protein N-terminal domain species: Haemophilus influenzae [TaxId: 727]
Probab=93.89 E-value=0.012 Score=47.88 Aligned_cols=23 Identities=30% Similarity=0.300 Sum_probs=20.6
Q ss_pred EEEEECCCCCcHHHHHHHHhCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.+||||-.-+|||||++.|++.-
T Consensus 4 ~~GivG~Pn~GKSTlf~~lt~~~ 26 (278)
T d1jala1 4 KCGIVGLPNVGKSTLFNALTKAG 26 (278)
T ss_dssp EEEEECCTTSSHHHHHHHHHHTC
T ss_pred eEEEECCCCCCHHHHHHHHHCCC
Confidence 47999999999999999999653
|
| >d2a5yb3 c.37.1.20 (B:109-385) CED-4, NB-ARC domain {Caenorhabditis elegans [TaxId: 6239]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: CED-4, NB-ARC domain species: Caenorhabditis elegans [TaxId: 6239]
Probab=93.72 E-value=0.018 Score=46.78 Aligned_cols=22 Identities=32% Similarity=0.529 Sum_probs=19.8
Q ss_pred CCEEEEECCCCCcHHHHHHHHh
Q 035832 45 KSFGLIFGRSGSGKTTLLQLLA 66 (245)
Q Consensus 45 Ge~~~liG~nGsGKSTLl~~l~ 66 (245)
..+++|.|.-|.|||||.+.+.
T Consensus 44 ~~~v~I~GmgGiGKTtLA~~v~ 65 (277)
T d2a5yb3 44 SFFLFLHGRAGSGKSVIASQAL 65 (277)
T ss_dssp SEEEEEECSTTSSHHHHHHHHH
T ss_pred ceEEEEECCCCCCHHHHHHHHH
Confidence 4589999999999999999875
|
| >d1e9ra_ c.37.1.11 (A:) Bacterial conjugative coupling protein TrwB {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Bacterial conjugative coupling protein TrwB species: Escherichia coli [TaxId: 562]
Probab=93.71 E-value=0.014 Score=49.90 Aligned_cols=40 Identities=15% Similarity=0.172 Sum_probs=26.9
Q ss_pred EEEEeCCCCCCCHHHHHHHHHHHHHhhc-CceEEEEecChhHHH
Q 035832 181 LLILDEPLAGLDWKARADVVKLLKHLKK-ELTILVVSHDLKEMA 223 (245)
Q Consensus 181 llllDEPts~LD~~~~~~i~~~l~~l~~-~~tiii~tHd~~~~~ 223 (245)
++++||--+-.... .+.+++.+.++ +..++++++++..+.
T Consensus 279 ~l~lDE~~~~~~~~---~l~~~l~~~Rk~Gv~~~l~~Qs~~ql~ 319 (433)
T d1e9ra_ 279 WLFIDELASLEKLA---SLADALTKGRKAGLRVVAGLQSTSQLD 319 (433)
T ss_dssp EEEESCGGGSCBCS---SHHHHHHHCTTTTEEEEEEESCHHHHH
T ss_pred EEEechHhhhcccH---HHHHHHHHhCCCCceEEEEeccHHHHH
Confidence 68889965433322 35566666654 689999999977654
|
| >d1fx0a3 c.37.1.11 (A:97-372) Central domain of alpha subunit of F1 ATP synthase {Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Spinach (Spinacia oleracea), chloroplast [TaxId: 3562]
Probab=93.39 E-value=0.016 Score=47.31 Aligned_cols=40 Identities=15% Similarity=0.029 Sum_probs=28.7
Q ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEE
Q 035832 39 SFSLPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINI 78 (245)
Q Consensus 39 sl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~ 78 (245)
=+.+-+|+..+|+|++|+|||+|+..++--..-+...+.+
T Consensus 61 l~pig~GQr~~Ifg~~g~GKt~l~~~~~~~~~~~~~v~V~ 100 (276)
T d1fx0a3 61 MIPVGRGQRELIIGDRQTGKTAVATDTILNQQGQNVICVY 100 (276)
T ss_dssp TSCCBTTCBCBEEESSSSSHHHHHHHHHHTCCTTTCEEEE
T ss_pred cccccCCceEeeccCCCCChHHHHHHHHhhhcccCceeee
Confidence 3678899999999999999999987544333333333333
|
| >d1jbka_ c.37.1.20 (A:) ClpB, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=93.17 E-value=0.024 Score=43.82 Aligned_cols=24 Identities=29% Similarity=0.432 Sum_probs=20.4
Q ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Q 035832 46 SFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 46 e~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.-..|+||.|.|||+++.-++..+
T Consensus 44 ~n~lLvG~pGVGKTalv~~LA~ri 67 (195)
T d1jbka_ 44 NNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEecCCcccHHHHHHHHHHH
Confidence 346899999999999999988654
|
| >d1r6bx2 c.37.1.20 (X:169-436) ClpA, an Hsp100 chaperone, AAA+ modules {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpA, an Hsp100 chaperone, AAA+ modules species: Escherichia coli [TaxId: 562]
Probab=93.17 E-value=0.023 Score=46.17 Aligned_cols=23 Identities=39% Similarity=0.434 Sum_probs=19.6
Q ss_pred CEEEEECCCCCcHHHHHHHHhCC
Q 035832 46 SFGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 46 e~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.-+.|+||.|+|||+++.-++..
T Consensus 40 ~n~lLVG~~GvGKTalv~~la~r 62 (268)
T d1r6bx2 40 NNPLLVGESGVGKTAIAEGLAWR 62 (268)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred CCcEEECCCCCcHHHHHHHHHHH
Confidence 45679999999999999988854
|
| >d1qvra3 c.37.1.20 (A:536-850) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=93.13 E-value=0.023 Score=47.11 Aligned_cols=36 Identities=31% Similarity=0.266 Sum_probs=26.1
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCC-CcceEEEcC
Q 035832 45 KSFGLIFGRSGSGKTTLLQLLAGLSKP-TSGSINIRG 80 (245)
Q Consensus 45 Ge~~~liG~nGsGKSTLl~~l~Gl~~p-~~G~i~~~g 80 (245)
.-.+.++||+|+|||.|.+.|+-.+.- ...-+.++.
T Consensus 53 ~~~~lf~Gp~G~GKt~lak~la~~l~~~~~~~~~~~~ 89 (315)
T d1qvra3 53 IGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDM 89 (315)
T ss_dssp SEEEEEBSCSSSSHHHHHHHHHHHHHSSGGGEEEECT
T ss_pred ceEEEEECCCcchHHHHHHHHHHHhcCCCcceEEEec
Confidence 336789999999999999999987522 233455653
|
| >d1p6xa_ c.37.1.1 (A:) Thymidine kinase {Equine herpesvirus type 4 [TaxId: 10331]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Equine herpesvirus type 4 [TaxId: 10331]
Probab=93.01 E-value=0.035 Score=46.49 Aligned_cols=26 Identities=23% Similarity=0.161 Sum_probs=22.0
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLSKPT 72 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~~p~ 72 (245)
.+.|=|+=||||||+++.|+.-+...
T Consensus 8 rI~iEG~iGsGKSTl~~~L~~~l~~~ 33 (333)
T d1p6xa_ 8 RIYLDGVYGIGKSTTGRVMASAASGG 33 (333)
T ss_dssp EEEEECSTTSSHHHHHHHHHSGGGCS
T ss_pred EEEEECCccCCHHHHHHHHHHHhccC
Confidence 36788999999999999999877543
|
| >d1um8a_ c.37.1.20 (A:) ClpX {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpX species: Helicobacter pylori [TaxId: 210]
Probab=92.92 E-value=0.025 Score=47.93 Aligned_cols=35 Identities=29% Similarity=0.267 Sum_probs=25.4
Q ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceEEEc
Q 035832 42 LPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSINIR 79 (245)
Q Consensus 42 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~~ 79 (245)
+.++.+. ++||+|+|||-|.|.|+.+.. ..-+.++
T Consensus 66 ~p~~niL-fiGPTGvGKTElAk~LA~~~~--~~~ir~D 100 (364)
T d1um8a_ 66 LSKSNIL-LIGPTGSGKTLMAQTLAKHLD--IPIAISD 100 (364)
T ss_dssp CCCCCEE-EECCTTSSHHHHHHHHHHHTT--CCEEEEE
T ss_pred CCCccee-eeCCCCccHHHHHHHHHhhcc--cceeehh
Confidence 4566655 669999999999999998752 2344554
|
| >d2olra1 c.91.1.1 (A:228-540) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Escherichia coli [TaxId: 562]
Probab=92.86 E-value=0.025 Score=46.84 Aligned_cols=20 Identities=45% Similarity=0.698 Sum_probs=18.0
Q ss_pred cCCCEEEEECCCCCcHHHHH
Q 035832 43 PEKSFGLIFGRSGSGKTTLL 62 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl 62 (245)
+.|++..+.|-||+|||||-
T Consensus 12 ~~~~~alfFGLSGTGKTTLs 31 (313)
T d2olra1 12 EKGDVAVFFGLSGTGKTTLS 31 (313)
T ss_dssp TTSCEEEEECSTTSSHHHHH
T ss_pred CCCCEEEEEccCCCCcccce
Confidence 46899999999999999985
|
| >d1w44a_ c.37.1.11 (A:) NTPase P4 {Bacteriophage phi-12 [TaxId: 161736]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: NTPase P4 species: Bacteriophage phi-12 [TaxId: 161736]
Probab=92.81 E-value=0.02 Score=47.81 Aligned_cols=30 Identities=23% Similarity=0.361 Sum_probs=23.0
Q ss_pred eEEEcCCCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 39 SFSLPEKSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 39 sl~i~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
-....+| ++.+.||.|+|||.|.+.|++..
T Consensus 118 ~~~~~~g-~~l~~G~pG~GKT~la~ala~~~ 147 (321)
T d1w44a_ 118 GHRYASG-MVIVTGKGNSGKTPLVHALGEAL 147 (321)
T ss_dssp TEEEESE-EEEEECSSSSCHHHHHHHHHHHH
T ss_pred hcccCCc-eEEEECCCCccHHHHHHHHHHHh
Confidence 3445555 45567999999999999999753
|
| >d1j3ba1 c.91.1.1 (A:212-529) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Thermus thermophilus [TaxId: 274]
Probab=92.68 E-value=0.026 Score=46.92 Aligned_cols=19 Identities=53% Similarity=0.786 Sum_probs=17.4
Q ss_pred CCCEEEEECCCCCcHHHHH
Q 035832 44 EKSFGLIFGRSGSGKTTLL 62 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl 62 (245)
.|++..+.|.||+|||||-
T Consensus 13 ~~~valffGLSGTGKTTLs 31 (318)
T d1j3ba1 13 EGDVAVFFGLSGTGKTTLS 31 (318)
T ss_dssp TCCEEEEEECTTSCHHHHT
T ss_pred CCCEEEEEccCCCCccccc
Confidence 5899999999999999984
|
| >d1d2ea3 c.37.1.8 (A:55-250) Elongation factor Tu (EF-Tu), N-terminal (G) domain {Cow (Bos taurus), mitochondrial [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor Tu (EF-Tu), N-terminal (G) domain species: Cow (Bos taurus), mitochondrial [TaxId: 9913]
Probab=92.48 E-value=0.027 Score=43.42 Aligned_cols=21 Identities=29% Similarity=0.319 Sum_probs=19.1
Q ss_pred EEEECCCCCcHHHHHHHHhCC
Q 035832 48 GLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~Gl 68 (245)
+|++|.-++|||||++.|.+.
T Consensus 6 i~iiGHvd~GKSTL~~~l~~~ 26 (196)
T d1d2ea3 6 VGTIGHVDHGKTTLTAAITKI 26 (196)
T ss_dssp EEEESSTTSSHHHHHHHHHHH
T ss_pred EEEEeCCCCcHHHHHHHHHHH
Confidence 789999999999999999764
|
| >d2jdia3 c.37.1.11 (A:95-379) Central domain of alpha subunit of F1 ATP synthase {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: Central domain of alpha subunit of F1 ATP synthase species: Cow (Bos taurus) [TaxId: 9913]
Probab=92.33 E-value=0.023 Score=46.59 Aligned_cols=29 Identities=21% Similarity=0.198 Sum_probs=24.5
Q ss_pred eeEEEcCCCEEEEECCCCCcHHHHHHHHh
Q 035832 38 VSFSLPEKSFGLIFGRSGSGKTTLLQLLA 66 (245)
Q Consensus 38 vsl~i~~Ge~~~liG~nGsGKSTLl~~l~ 66 (245)
.=+.+-+|+..+|+|+.|+|||||+.-++
T Consensus 61 ~l~pig~GQr~~If~~~g~GKt~ll~~~~ 89 (285)
T d2jdia3 61 SLVPIGRGQRELIIGDRQTGKTSIAIDTI 89 (285)
T ss_dssp HHSCCBTTCBCEEEESTTSSHHHHHHHHH
T ss_pred cccCccCCCEEEeecCCCCChHHHHHHHH
Confidence 34678899999999999999999976443
|
| >d1e2ka_ c.37.1.1 (A:) Thymidine kinase {Herpes simplex virus type 1, different strains [TaxId: 10298]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Herpes simplex virus type 1, different strains [TaxId: 10298]
Probab=92.17 E-value=0.036 Score=46.34 Aligned_cols=24 Identities=46% Similarity=0.441 Sum_probs=19.1
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLSK 70 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~~ 70 (245)
.++|=|+=||||||+++.|+..+.
T Consensus 6 rI~IEG~iGsGKTTl~~~La~~l~ 29 (329)
T d1e2ka_ 6 RVYIDGPHGMGKTTTTQLLVALGS 29 (329)
T ss_dssp EEEECSCTTSSHHHHHHHHTC---
T ss_pred EEEEECCcCCCHHHHHHHHHHHhC
Confidence 377889999999999999987553
|
| >d1osna_ c.37.1.1 (A:) Thymidine kinase {Varicella-zoster virus [TaxId: 10335]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Nucleotide and nucleoside kinases domain: Thymidine kinase species: Varicella-zoster virus [TaxId: 10335]
Probab=92.09 E-value=0.034 Score=46.47 Aligned_cols=32 Identities=25% Similarity=0.100 Sum_probs=24.9
Q ss_pred EEEEECCCCCcHHHHHHHHhCCCCCCcceEEE
Q 035832 47 FGLIFGRSGSGKTTLLQLLAGLSKPTSGSINI 78 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i~~ 78 (245)
.++|=|+=||||||+++.|.-.+......+.+
T Consensus 7 rI~IEG~iGsGKSTl~~~L~~~l~~~g~~v~~ 38 (331)
T d1osna_ 7 RIYLDGAYGIGKTTAAEEFLHHFAITPNRILL 38 (331)
T ss_dssp EEEEEESSSSCTTHHHHHHHHTTTTSGGGEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCceEE
Confidence 47888999999999999999877654334444
|
| >d1ii2a1 c.91.1.1 (A:201-523) Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) {Trypanosoma cruzi [TaxId: 5693]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: PEP carboxykinase-like superfamily: PEP carboxykinase-like family: PEP carboxykinase C-terminal domain domain: Phosphoenolpyruvate (PEP) carboxykinase (ATP-oxaloacetate carboxy-lyase) species: Trypanosoma cruzi [TaxId: 5693]
Probab=91.84 E-value=0.042 Score=45.66 Aligned_cols=20 Identities=45% Similarity=0.679 Sum_probs=18.1
Q ss_pred cCCCEEEEECCCCCcHHHHH
Q 035832 43 PEKSFGLIFGRSGSGKTTLL 62 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl 62 (245)
+.|++..+.|-||+|||||-
T Consensus 12 ~~gd~alfFGLSGTGKTTLs 31 (323)
T d1ii2a1 12 KQGDVTVFFGLSGTGKTTLS 31 (323)
T ss_dssp TTCCEEEEECCTTSSHHHHH
T ss_pred CCCCEEEEEccCCCCcccce
Confidence 36889999999999999997
|
| >d1u0ja_ c.37.1.20 (A:) Rep 40 protein helicase domain {Adeno-associated virus 2, AAV2 [TaxId: 10804]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Rep 40 protein helicase domain species: Adeno-associated virus 2, AAV2 [TaxId: 10804]
Probab=91.74 E-value=0.034 Score=45.04 Aligned_cols=34 Identities=24% Similarity=0.437 Sum_probs=28.1
Q ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceE
Q 035832 42 LPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSI 76 (245)
Q Consensus 42 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i 76 (245)
..+-.++.|.||-++|||||+++|+.++ +..|.+
T Consensus 101 ~~k~n~~~l~G~~~tGKS~f~~~i~~~l-g~~~~~ 134 (267)
T d1u0ja_ 101 FGKRNTIWLFGPATTGKTNIAEAIAHTV-PFYGCV 134 (267)
T ss_dssp STTCCEEEEECSTTSSHHHHHHHHHHHS-SCEEEC
T ss_pred CCccEEEEEEcCCCCCHHHHHHHHHHHh-cchhhc
Confidence 3556788999999999999999999998 555543
|
| >d1yksa1 c.37.1.14 (A:185-324) YFV helicase domain {Yellow fever virus [TaxId: 11089]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: YFV helicase domain species: Yellow fever virus [TaxId: 11089]
Probab=91.61 E-value=0.019 Score=40.46 Aligned_cols=21 Identities=24% Similarity=0.229 Sum_probs=18.0
Q ss_pred EcCCCEEEEECCCCCcHHHHH
Q 035832 42 LPEKSFGLIFGRSGSGKTTLL 62 (245)
Q Consensus 42 i~~Ge~~~liG~nGsGKSTLl 62 (245)
+++|+.+.|.+|.|||||+..
T Consensus 4 l~~~~~~il~~~tGsGKT~~~ 24 (140)
T d1yksa1 4 LKKGMTTVLDFHPGAGKTRRF 24 (140)
T ss_dssp TSTTCEEEECCCTTSSTTTTH
T ss_pred HHcCCcEEEEcCCCCChhHHH
Confidence 468999999999999999543
|
| >d1jnya3 c.37.1.8 (A:4-227) Elongation factor eEF-1alpha, N-terminal (G) domain {Archaeon Sulfolobus solfataricus [TaxId: 2287]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Archaeon Sulfolobus solfataricus [TaxId: 2287]
Probab=91.56 E-value=0.043 Score=42.88 Aligned_cols=38 Identities=18% Similarity=0.306 Sum_probs=26.4
Q ss_pred HHHHHHHHhhCCCEEE----EeCCCCCCCHHHHHHHHHHHHHh
Q 035832 168 RLALAIQLVQVPDLLI----LDEPLAGLDWKARADVVKLLKHL 206 (245)
Q Consensus 168 rv~iAral~~~p~lll----lDEPts~LD~~~~~~i~~~l~~l 206 (245)
.+.+|+++ .-+.+++ +|.+...-|....+.+.+.+..+
T Consensus 132 ~l~~~~~~-~~~~iIv~iNK~D~~~~~~~~~~~~~v~~~i~~~ 173 (224)
T d1jnya3 132 HIILAKTM-GLDQLIVAVNKMDLTEPPYDEKRYKEIVDQVSKF 173 (224)
T ss_dssp HHHHHHHT-TCTTCEEEEECGGGSSSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-CCCceEEEEEcccCCCccccHHHHHHHHHHHHhH
Confidence 45555555 5667777 89888778877777777766664
|
| >d2bmfa2 c.37.1.14 (A:178-482) Dengue virus helicase {Dengue virus type 2 [TaxId: 11060]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: Dengue virus helicase species: Dengue virus type 2 [TaxId: 11060]
Probab=90.36 E-value=0.044 Score=44.05 Aligned_cols=19 Identities=26% Similarity=0.417 Sum_probs=17.4
Q ss_pred EcCCCEEEEECCCCCcHHH
Q 035832 42 LPEKSFGLIFGRSGSGKTT 60 (245)
Q Consensus 42 i~~Ge~~~liG~nGsGKST 60 (245)
+.+|+.+.|.+|.|||||+
T Consensus 6 ~~~~~~~lv~~~TGsGKT~ 24 (305)
T d2bmfa2 6 FRKKRLTIMDLHPGAGKTK 24 (305)
T ss_dssp SSTTCEEEECCCTTSSTTT
T ss_pred hhcCCcEEEEECCCCCHHH
Confidence 4689999999999999997
|
| >d2b8ta1 c.37.1.24 (A:11-149) Thymidine kinase, TK1, N-terminal domain {Ureaplasma urealyticum [TaxId: 2130]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Ureaplasma urealyticum [TaxId: 2130]
Probab=90.33 E-value=0.087 Score=38.20 Aligned_cols=24 Identities=33% Similarity=0.348 Sum_probs=20.2
Q ss_pred CCEEEEECCCCCcHHH-HHHHHhCC
Q 035832 45 KSFGLIFGRSGSGKTT-LLQLLAGL 68 (245)
Q Consensus 45 Ge~~~liG~nGsGKST-Ll~~l~Gl 68 (245)
|.+..++||=.||||| |++.+-..
T Consensus 2 G~L~~i~GpMfsGKTteLi~~~~~~ 26 (139)
T d2b8ta1 2 GWIEFITGPMFAGKTAELIRRLHRL 26 (139)
T ss_dssp CEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred cEEEEEEccccCHHHHHHHHHHHHH
Confidence 6788999999999999 77877544
|
| >d1zunb3 c.37.1.8 (B:16-237) Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain {Pseudomonas syringae pv. tomato [TaxId: 323]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Sulfate adenylate transferase subunit cysN/C, EF-Tu domain G-like domain species: Pseudomonas syringae pv. tomato [TaxId: 323]
Probab=90.24 E-value=0.078 Score=41.51 Aligned_cols=19 Identities=37% Similarity=0.424 Sum_probs=17.5
Q ss_pred EEEECCCCCcHHHHHHHHh
Q 035832 48 GLIFGRSGSGKTTLLQLLA 66 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~ 66 (245)
++++|.-.+|||||+..|.
T Consensus 12 i~viGHVd~GKSTL~~~Ll 30 (222)
T d1zunb3 12 FLTCGNVDDGKSTLIGRLL 30 (222)
T ss_dssp EEEECCTTSSHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHH
Confidence 6899999999999999994
|
| >d1pjra1 c.37.1.19 (A:1-318) DEXX box DNA helicase {Bacillus stearothermophilus, PcrA [TaxId: 1422]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Bacillus stearothermophilus, PcrA [TaxId: 1422]
Probab=90.23 E-value=0.06 Score=43.66 Aligned_cols=16 Identities=50% Similarity=0.598 Sum_probs=13.3
Q ss_pred EEEEECCCCCcHHHHH
Q 035832 47 FGLIFGRSGSGKTTLL 62 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl 62 (245)
.+.|.|+-||||||.+
T Consensus 26 ~~lV~g~aGSGKTt~l 41 (318)
T d1pjra1 26 PLLIMAGAGSGKTRVL 41 (318)
T ss_dssp CEEEEECTTSCHHHHH
T ss_pred CEEEEecCCccHHHHH
Confidence 3668899999999765
|
| >d1uaaa1 c.37.1.19 (A:2-307) DEXX box DNA helicase {Escherichia coli, RepD [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: DEXX box DNA helicase species: Escherichia coli, RepD [TaxId: 562]
Probab=90.07 E-value=0.071 Score=42.67 Aligned_cols=16 Identities=38% Similarity=0.613 Sum_probs=13.4
Q ss_pred EEEEECCCCCcHHHHH
Q 035832 47 FGLIFGRSGSGKTTLL 62 (245)
Q Consensus 47 ~~~liG~nGsGKSTLl 62 (245)
-+.|+|+-||||||.+
T Consensus 16 ~~lI~g~aGTGKTt~l 31 (306)
T d1uaaa1 16 PCLVLAGAGSGKTRVI 31 (306)
T ss_dssp EEEECCCTTSCHHHHH
T ss_pred CEEEEeeCCccHHHHH
Confidence 4679999999999754
|
| >d1a1va1 c.37.1.14 (A:190-325) HCV helicase domain {Human hepatitis C virus (HCV), different isolates [TaxId: 11103]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RNA helicase domain: HCV helicase domain species: Human hepatitis C virus (HCV), different isolates [TaxId: 11103]
Probab=90.07 E-value=0.059 Score=38.18 Aligned_cols=33 Identities=18% Similarity=0.099 Sum_probs=24.3
Q ss_pred HHhhCCCEEEEeCCCCCCCHHHHHHHHHHHHHhh
Q 035832 174 QLVQVPDLLILDEPLAGLDWKARADVVKLLKHLK 207 (245)
Q Consensus 174 al~~~p~llllDEPts~LD~~~~~~i~~~l~~l~ 207 (245)
....+-+++|+||-= .+|..+...+..+++.++
T Consensus 90 ~~~~~~~~vIiDE~H-~~~~~~~~~~~~~l~~~~ 122 (136)
T d1a1va1 90 CSGGAYDIIICDECH-STDATSILGIGTVLDQAE 122 (136)
T ss_dssp GGGCCCSEEEEETTT-CCSHHHHHHHHHHHHHTT
T ss_pred hhhhcCCEEEEeccc-ccCHHHHHHHHHHHHHHH
Confidence 345677999999985 468887777777766654
|
| >d2gnoa2 c.37.1.20 (A:11-208) gamma subunit of DNA polymerase III, N-domain {Thermotoga maritima [TaxId: 2336]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: gamma subunit of DNA polymerase III, N-domain species: Thermotoga maritima [TaxId: 2336]
Probab=89.74 E-value=0.096 Score=40.17 Aligned_cols=42 Identities=12% Similarity=0.152 Sum_probs=35.0
Q ss_pred CCEEEEeCCCCCCCHHHHHHHHHHHHHhhcCceEEEEecChhH
Q 035832 179 PDLLILDEPLAGLDWKARADVVKLLKHLKKELTILVVSHDLKE 221 (245)
Q Consensus 179 p~llllDEPts~LD~~~~~~i~~~l~~l~~~~tiii~tHd~~~ 221 (245)
.+++++|| .-.|...++..+++.|.+-.....+|++|++.+.
T Consensus 80 ~KviIId~-ad~l~~~aqNaLLK~LEEPp~~t~fiLit~~~~~ 121 (198)
T d2gnoa2 80 RKYVIVHD-CERMTQQAANAFLKALEEPPEYAVIVLNTRRWHY 121 (198)
T ss_dssp SEEEEETT-GGGBCHHHHHHTHHHHHSCCTTEEEEEEESCGGG
T ss_pred CEEEEEeC-ccccchhhhhHHHHHHhCCCCCceeeeccCChhh
Confidence 58999999 4678899999999998887667788999998764
|
| >d1g8fa3 c.37.1.15 (A:390-511) ATP sulfurylase C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: ATP sulfurylase C-terminal domain domain: ATP sulfurylase C-terminal domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=89.47 E-value=0.12 Score=36.65 Aligned_cols=29 Identities=7% Similarity=-0.127 Sum_probs=23.1
Q ss_pred cCCCEEEEECCCCCcHHHHHHHH-hCCCCC
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLL-AGLSKP 71 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l-~Gl~~p 71 (245)
++|=.+.+.|-+|||||||.++| .-|+..
T Consensus 4 kqgf~i~~tg~~~~gk~~ia~al~~~l~q~ 33 (122)
T d1g8fa3 4 KQGFSIVLGNSLTVSREQLSIALLSTFLQF 33 (122)
T ss_dssp GCCEEEEECTTCCSCHHHHHHHHHHHHTTS
T ss_pred ccceEEEEeCCCCCCHHHHHHHHHHHHHHh
Confidence 45667889999999999999988 445443
|
| >d1w36d1 c.37.1.19 (D:2-360) Exodeoxyribonuclease V alpha chain (RecD) {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Exodeoxyribonuclease V alpha chain (RecD) species: Escherichia coli [TaxId: 562]
Probab=89.47 E-value=0.14 Score=42.98 Aligned_cols=20 Identities=35% Similarity=0.601 Sum_probs=17.5
Q ss_pred CCCEEEEECCCCCcHHHHHH
Q 035832 44 EKSFGLIFGRSGSGKTTLLQ 63 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~ 63 (245)
.+.++.|.||-|+||||++.
T Consensus 162 ~~~~~vI~G~pGTGKTt~i~ 181 (359)
T d1w36d1 162 TRRISVISGGPGTGKTTTVA 181 (359)
T ss_dssp TBSEEEEECCTTSTHHHHHH
T ss_pred cCCeEEEEcCCCCCceehHH
Confidence 36799999999999999874
|
| >d1puja_ c.37.1.8 (A:) Probable GTPase YlqF {Bacillus subtilis [TaxId: 1423]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Probable GTPase YlqF species: Bacillus subtilis [TaxId: 1423]
Probab=89.04 E-value=0.14 Score=41.10 Aligned_cols=28 Identities=32% Similarity=0.354 Sum_probs=23.2
Q ss_pred CCEEEEECCCCCcHHHHHHHHhCCCCCC
Q 035832 45 KSFGLIFGRSGSGKTTLLQLLAGLSKPT 72 (245)
Q Consensus 45 Ge~~~liG~nGsGKSTLl~~l~Gl~~p~ 72 (245)
+-.++++|-.-+|||||+|.|.|-....
T Consensus 112 ~~~v~vvG~PNvGKSsliN~L~~~~~~~ 139 (273)
T d1puja_ 112 AIRALIIGIPNVGKSTLINRLAKKNIAK 139 (273)
T ss_dssp CEEEEEEESTTSSHHHHHHHHHTSCCC-
T ss_pred ceEEEEEecCccchhhhhhhhhccceEE
Confidence 3348999999999999999999976543
|
| >d1n0ua2 c.37.1.8 (A:3-343) Elongation factor 2 (eEF-2), N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor 2 (eEF-2), N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.82 E-value=0.084 Score=44.17 Aligned_cols=23 Identities=30% Similarity=0.406 Sum_probs=19.9
Q ss_pred EEEECCCCCcHHHHHHHH---hCCCC
Q 035832 48 GLIFGRSGSGKTTLLQLL---AGLSK 70 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l---~Gl~~ 70 (245)
+||+|.-|+|||||+..| +|...
T Consensus 20 I~iiGhvd~GKTTL~d~Ll~~~g~i~ 45 (341)
T d1n0ua2 20 MSVIAHVDHGKSTLTDSLVQRAGIIS 45 (341)
T ss_dssp EEEECCGGGTHHHHHHHHHHHHBCCB
T ss_pred EEEEeCCCCcHHHHHHHHHHHCCCcc
Confidence 899999999999999988 46553
|
| >d1qvra2 c.37.1.20 (A:149-535) ClpB, AAA+ modules {Thermus thermophilus [TaxId: 274]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: ClpB, AAA+ modules species: Thermus thermophilus [TaxId: 274]
Probab=88.62 E-value=0.094 Score=44.62 Aligned_cols=20 Identities=35% Similarity=0.620 Sum_probs=16.9
Q ss_pred EEEECCCCCcHHHHHHHHhC
Q 035832 48 GLIFGRSGSGKTTLLQLLAG 67 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l~G 67 (245)
..|+||.|.|||+++.-++-
T Consensus 46 ~llvG~~GvGKtaiv~~la~ 65 (387)
T d1qvra2 46 PVLIGEPGVGKTAIVEGLAQ 65 (387)
T ss_dssp CEEEECTTSCHHHHHHHHHH
T ss_pred CeEECCCCCCHHHHHHHHHH
Confidence 57899999999999876653
|
| >d1r5ba3 c.37.1.8 (A:215-459) Eukaryotic peptide chain release factor ERF2, G domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Eukaryotic peptide chain release factor ERF2, G domain species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]
Probab=88.49 E-value=0.1 Score=41.42 Aligned_cols=22 Identities=27% Similarity=0.424 Sum_probs=19.2
Q ss_pred EEEECCCCCcHHHHHHHH---hCCC
Q 035832 48 GLIFGRSGSGKTTLLQLL---AGLS 69 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l---~Gl~ 69 (245)
++++|.-++|||||+..| +|..
T Consensus 27 i~iiGHVD~GKSTL~~~Ll~~~g~i 51 (245)
T d1r5ba3 27 IVFIGHVDAGKSTLGGNILFLTGMV 51 (245)
T ss_dssp EEEEECGGGTHHHHHHHHHHHTTSS
T ss_pred EEEEeeCCCCHHHHHHHHHHHcCCc
Confidence 789999999999999888 5554
|
| >d1f60a3 c.37.1.8 (A:2-240) Elongation factor eEF-1alpha, N-terminal (G) domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: G proteins domain: Elongation factor eEF-1alpha, N-terminal (G) domain species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=88.10 E-value=0.12 Score=40.79 Aligned_cols=23 Identities=30% Similarity=0.361 Sum_probs=18.9
Q ss_pred EEEECCCCCcHHHHHHHH---hCCCC
Q 035832 48 GLIFGRSGSGKTTLLQLL---AGLSK 70 (245)
Q Consensus 48 ~~liG~nGsGKSTLl~~l---~Gl~~ 70 (245)
++++|.-++|||||+..| +|.+.
T Consensus 9 i~iiGHvD~GKsTl~~~ll~~~g~i~ 34 (239)
T d1f60a3 9 VVVIGHVDSGKSTTTGHLIYKCGGID 34 (239)
T ss_dssp EEEEECTTSCHHHHHHHHHHHHSCSS
T ss_pred EEEEeCCCCCHHHHHHHHHHHcCCcc
Confidence 689999999999999777 45443
|
| >d1ny5a2 c.37.1.20 (A:138-384) Transcriptional activator sigm54 (NtrC1), C-terminal domain {Aquifex aeolicus [TaxId: 63363]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Transcriptional activator sigm54 (NtrC1), C-terminal domain species: Aquifex aeolicus [TaxId: 63363]
Probab=88.03 E-value=0.13 Score=40.71 Aligned_cols=25 Identities=36% Similarity=0.474 Sum_probs=21.1
Q ss_pred CCCEEEEECCCCCcHHHHHHHHhCC
Q 035832 44 EKSFGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl~~l~Gl 68 (245)
.+.-+.|.|+.|+||+++.+.|-..
T Consensus 22 ~~~pvlI~Ge~GtGK~~~A~~ih~~ 46 (247)
T d1ny5a2 22 AECPVLITGESGVGKEVVARLIHKL 46 (247)
T ss_dssp CCSCEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCCEEEECCCCcCHHHHHHHHHHh
Confidence 4556889999999999999999643
|
| >d1lkxa_ c.37.1.9 (A:) Myosin S1, motor domain {Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum, class-I myosin MyoE [TaxId: 44689]
Probab=87.78 E-value=0.14 Score=46.65 Aligned_cols=26 Identities=31% Similarity=0.419 Sum_probs=22.1
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCC
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl 68 (245)
++.+.+.|.|.||||||+-.|.|...
T Consensus 84 ~~~QsIiisGeSGsGKTe~~k~il~y 109 (684)
T d1lkxa_ 84 QENQCVIISGESGAGKTEASKKIMQF 109 (684)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCeEEEEEcCCCCCHHHHHHHHHHH
Confidence 46789999999999999988877543
|
| >d1d0xa2 c.37.1.9 (A:2-33,A:80-759) Myosin S1, motor domain {Dictyostelium discoideum [TaxId: 44689]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Dictyostelium discoideum [TaxId: 44689]
Probab=87.67 E-value=0.15 Score=46.82 Aligned_cols=27 Identities=30% Similarity=0.279 Sum_probs=23.2
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
.+.+.+.|.|+||||||+-.|.|+..+
T Consensus 123 ~~nQsIiisGeSGaGKTe~~k~il~yL 149 (712)
T d1d0xa2 123 RQNQSLLITGESGAGKTENTKKVIQYL 149 (712)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCceEEEeCCCCCCHHHHHHHHHHHH
Confidence 467899999999999999998886544
|
| >d1xbta1 c.37.1.24 (A:18-150) Thymidine kinase, TK1, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=87.07 E-value=0.18 Score=36.16 Aligned_cols=23 Identities=30% Similarity=0.351 Sum_probs=18.9
Q ss_pred CCCEEEEECCCCCcHHHHH-HHHh
Q 035832 44 EKSFGLIFGRSGSGKTTLL-QLLA 66 (245)
Q Consensus 44 ~Ge~~~liG~nGsGKSTLl-~~l~ 66 (245)
+|.+..|+||=.|||||-| +.+.
T Consensus 1 ~G~L~li~GpMfsGKTt~Li~~~~ 24 (133)
T d1xbta1 1 RGQIQVILGPMFSGKSTELMRRVR 24 (133)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHH
T ss_pred CcEEEEEEecccCHHHHHHHHHHH
Confidence 5889999999999999955 4443
|
| >d1br2a2 c.37.1.9 (A:80-789) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]
Probab=86.81 E-value=0.18 Score=46.25 Aligned_cols=27 Identities=30% Similarity=0.235 Sum_probs=22.6
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
+..+.+.|.|.||||||+-.|.|+..+
T Consensus 89 ~~~Q~IiisGeSGaGKTe~~k~il~yL 115 (710)
T d1br2a2 89 REDQSILCTGESGAGKTENTKKVIQYL 115 (710)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHHH
Confidence 467899999999999999988875543
|
| >d1tuea_ c.37.1.20 (A:) Replication protein E1 helicase domain {Human papillomavirus type 18 [TaxId: 333761]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Extended AAA-ATPase domain domain: Replication protein E1 helicase domain species: Human papillomavirus type 18 [TaxId: 333761]
Probab=86.29 E-value=0.19 Score=38.73 Aligned_cols=32 Identities=19% Similarity=0.348 Sum_probs=27.5
Q ss_pred EcCCCEEEEECCCCCcHHHHHHHHhCCCCCCcceE
Q 035832 42 LPEKSFGLIFGRSGSGKTTLLQLLAGLSKPTSGSI 76 (245)
Q Consensus 42 i~~Ge~~~liG~nGsGKSTLl~~l~Gl~~p~~G~i 76 (245)
+++-.++.+.||.++|||++...|+.++. |.+
T Consensus 50 ~PKkn~i~~~GP~~TGKS~f~~sl~~~l~---G~v 81 (205)
T d1tuea_ 50 TPKKNCLVFCGPANTGKSYFGMSFIHFIQ---GAV 81 (205)
T ss_dssp CTTCSEEEEESCGGGCHHHHHHHHHHHHT---CEE
T ss_pred CCCceEEEEECCCCccHHHHHHHHHHHhC---CEE
Confidence 46778999999999999999999998873 654
|
| >d2mysa2 c.37.1.9 (A:4-33,A:80-843) Myosin S1, motor domain {Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), pectoral muscle [TaxId: 9031]
Probab=85.40 E-value=0.21 Score=46.32 Aligned_cols=27 Identities=33% Similarity=0.293 Sum_probs=21.8
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
...+.+.|.|+||||||+-.|.|+..+
T Consensus 121 ~~~QsIiisGeSGaGKTe~~K~il~yL 147 (794)
T d2mysa2 121 RENQSILITGESGAGKTVNTKRVIQYF 147 (794)
T ss_dssp TCCEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CCCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999998777665443
|
| >d1gkub1 c.37.1.16 (B:1-250) Helicase-like "domain" of reverse gyrase {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Helicase-like "domain" of reverse gyrase domain: Helicase-like "domain" of reverse gyrase species: Archaeon Archaeoglobus fulgidus [TaxId: 2234]
Probab=84.31 E-value=0.16 Score=39.41 Aligned_cols=23 Identities=22% Similarity=0.109 Sum_probs=18.5
Q ss_pred cCCCEEEEECCCCCcHHHHHHHH
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLL 65 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l 65 (245)
-.|+-+.+++|.|+|||+..-+.
T Consensus 56 l~g~~~~i~apTGsGKT~~~~~~ 78 (237)
T d1gkub1 56 LRKESFAATAPTGVGKTSFGLAM 78 (237)
T ss_dssp HTTCCEECCCCBTSCSHHHHHHH
T ss_pred HCCCCEEEEecCCChHHHHHHHH
Confidence 37888999999999999765433
|
| >d1kk8a2 c.37.1.9 (A:1-28,A:77-837) Myosin S1, motor domain {Bay scallop (Aequipecten irradians) [TaxId: 31199]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Bay scallop (Aequipecten irradians) [TaxId: 31199]
Probab=84.01 E-value=0.24 Score=45.92 Aligned_cols=26 Identities=35% Similarity=0.340 Sum_probs=21.0
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCC
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGL 68 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl 68 (245)
...+.+.|.|+||||||.-.|.|+..
T Consensus 119 ~~nQ~IiisGESGaGKTe~~K~il~y 144 (789)
T d1kk8a2 119 RENQSCLITGESGAGKTENTKKVIMY 144 (789)
T ss_dssp TSEEEEEEECSTTSSHHHHHHHHHHH
T ss_pred CCCcEEEEEeCCCCCHHHHHHHHHHH
Confidence 35789999999999999886665543
|
| >d1w7ja2 c.37.1.9 (A:63-792) Myosin S1, motor domain {Chicken (Gallus gallus), Va isoform [TaxId: 9031]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Motor proteins domain: Myosin S1, motor domain species: Chicken (Gallus gallus), Va isoform [TaxId: 9031]
Probab=83.91 E-value=0.29 Score=44.86 Aligned_cols=27 Identities=22% Similarity=0.229 Sum_probs=22.8
Q ss_pred cCCCEEEEECCCCCcHHHHHHHHhCCC
Q 035832 43 PEKSFGLIFGRSGSGKTTLLQLLAGLS 69 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl~~l~Gl~ 69 (245)
...+.+.|.|+||||||+-.|.++..+
T Consensus 92 ~~~Q~IiisGeSGsGKTe~~k~il~~l 118 (730)
T d1w7ja2 92 ERNQSIIVSGESGAGKTVSAKYAMRYF 118 (730)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHHHH
T ss_pred CCCeEEEEEeCCCCCHHHHHHHHHHHH
Confidence 568899999999999999888886543
|
| >d2p6ra3 c.37.1.19 (A:1-202) Hel308 helicase {Archaeoglobus fulgidus [TaxId: 2234]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Tandem AAA-ATPase domain domain: Hel308 helicase species: Archaeoglobus fulgidus [TaxId: 2234]
Probab=83.34 E-value=0.18 Score=38.07 Aligned_cols=19 Identities=26% Similarity=0.109 Sum_probs=15.8
Q ss_pred cCCCEEEEECCCCCcHHHH
Q 035832 43 PEKSFGLIFGRSGSGKTTL 61 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTL 61 (245)
..|.-+.|..|.|||||+.
T Consensus 38 ~~~~~~il~apTGsGKT~~ 56 (202)
T d2p6ra3 38 FSGKNLLLAMPTAAGKTLL 56 (202)
T ss_dssp TTCSCEEEECSSHHHHHHH
T ss_pred HcCCCEEEEcCCCCchhHH
Confidence 3566778999999999985
|
| >d1g5ta_ c.37.1.11 (A:) ATP:corrinoid adenosyltransferase CobA {Salmonella typhimurium [TaxId: 90371]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: RecA protein-like (ATPase-domain) domain: ATP:corrinoid adenosyltransferase CobA species: Salmonella typhimurium [TaxId: 90371]
Probab=81.60 E-value=0.38 Score=35.42 Aligned_cols=57 Identities=16% Similarity=0.266 Sum_probs=43.5
Q ss_pred CCCEEEEeCCCCCCC--HHHHHHHHHHHHHhhcCceEEEEecC-hhHHHhhccEEEEEeC
Q 035832 178 VPDLLILDEPLAGLD--WKARADVVKLLKHLKKELTILVVSHD-LKEMAALVDHSWRMDM 234 (245)
Q Consensus 178 ~p~llllDEPts~LD--~~~~~~i~~~l~~l~~~~tiii~tHd-~~~~~~~~d~v~~l~~ 234 (245)
+.+++||||-..+++ ....+++.++|++..+..-+|++-++ ++++...||.|..|+.
T Consensus 94 ~~dllILDEi~~Ai~~gli~~~~v~~ll~~rp~~~evVlTGr~~p~~L~e~ADlVTEm~~ 153 (157)
T d1g5ta_ 94 LLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGCHRDILDLADTVSELRP 153 (157)
T ss_dssp TCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSCCHHHHHHCSEEEECCC
T ss_pred ccCEEeHHHHHHHHHcCCCCHHHHHHHHHhCCCCCEEEEECCCCCHHHHHhcceeeeeee
Confidence 369999999887654 34567888888765456789999886 4557789999998864
|
| >d1xx6a1 c.37.1.24 (A:2-142) Thymidine kinase, TK1, N-terminal domain {Clostridium acetobutylicum [TaxId: 1488]} | Back information, alignment and structure |
|---|
class: Alpha and beta proteins (a/b) fold: P-loop containing nucleoside triphosphate hydrolases superfamily: P-loop containing nucleoside triphosphate hydrolases family: Type II thymidine kinase domain: Thymidine kinase, TK1, N-terminal domain species: Clostridium acetobutylicum [TaxId: 1488]
Probab=81.45 E-value=0.43 Score=34.42 Aligned_cols=24 Identities=25% Similarity=0.236 Sum_probs=19.7
Q ss_pred cCCCEEEEECCCCCcHHHHH-HHHh
Q 035832 43 PEKSFGLIFGRSGSGKTTLL-QLLA 66 (245)
Q Consensus 43 ~~Ge~~~liG~nGsGKSTLl-~~l~ 66 (245)
+.|.+..|+||=.|||||-| +.+-
T Consensus 5 ~~G~l~lI~GpMfSGKTteLi~~~~ 29 (141)
T d1xx6a1 5 DHGWVEVIVGPMYSGKSEELIRRIR 29 (141)
T ss_dssp TCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred cceeEEEEEeccccHHHHHHHHHHH
Confidence 47999999999999999954 5553
|