Citrus Sinensis ID: 035919

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550--
MDSLQASYREDDDEEEPPQLPSTPPQNDGAQETQAETDDVAKEPEPSPKADAVREPESLDDSAEEANHEPLPQPEPMVRDSVTENDAQEPASGNDVALEVEAQRDPVVSDSITENAAAQGREPPNDVAREALPEAEPMVNDSVSEEEAEEAETHNGAVQEAQPDIQPEPMISESVSEDDPTASDDTQKSPKRDSIAAQNDDVEEEDDEDDDPPPKKQKPLSSLTTLHEQQALEQQQQTPVTNNNSISKANLAPSSGTAAKKSKKKNNNVWVSRTTRKGKKKNKTNTQKEVSPEDTVLITPVPRFPDKGDDNPEMKICLSKVYKAEKVELSDDRLTAGSTKGYRMVRATRGVVEGAWYYEIKVVALGETGHTRLGWSTEKGDLQAPVGYDGNSFGYRDIDGSKVHKALREKYGEEGYKEGDVIGFYINLPEGGQYAPKPPHFVWYKGQRYVCAPDSKEDPPKVVPGSEISFFKNGVCQGVAFKDLYGGRYYPAASMYSLPNQPNCVVKFNFGPDFECFPDDFGERPVPSPMAEVPYHGFDSRVENGVPNEKKH
ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHHHHHHHHcccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccEEEcccccEEEccccEEEEEEccccccccEEEEEEEEEcccccEEEEEEEcccccccccccccccccEEEcccccEEEccccccccccccccccEEEEEEEccccccccccccccccccccEEEEcccccccccccccccEEEEEEcccEEcccccccccccccccccccccccccccEEEEEcccccccccccccccccccccccccccccHHHHHccccccccc
ccccHcEccccccccccccccccccccccccHcccccccccccccccccHHHcEccccccHHHHHHHHcccccccccEcccccccccccccccccHHHHHHHcccccHHHHHHHHHHHccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccHHHccccccccccccccccccccHccccccccccccccHHHHHccccccccccHHHccccccccccccccccccccEEEccccccccccccccccccccccccEcccccccccccccccccccEEEEcccccccEEEccccEEEEcccccEEEEEcccccccEEEEEEEEEEccccccEEEEEcccccccccccccccccccEEcccccEEEccccccccccccccccEEEEEEEccccccccccccccEEEcccEEEEcccccccccccccccEEEEEEcccccccccccccccccccEEEEEEcccccccEEEEEccccccccccccccccccccHHHHHHHHHHHHHHHHccccccc
mdslqasyredddeeeppqlpstppqndgaqetqaetddvakepepspkadavrepeslddsaeeanheplpqpepmvrdsvtendaqepasgndvaleveaqrdpvvsdsitenaaaqgreppndvarealpeaepmvndsvseeEAEEaethngavqeaqpdiqpepmisesvseddptasddtqkspkrdsiaaqnddveeeddedddpppkkqkplsslTTLHEQQALEqqqqtpvtnnnsiskanlapssgtaakkskkknnnVWVSRttrkgkkknktntqkevspedtvlitpvprfpdkgddnpemkiCLSKVYKaekvelsddrltagstkgyRMVRATRGVVEGAWYYEIKVVALgetghtrlgwstekgdlqapvgydgnsfgyrdidgsKVHKALREKYgeegykegDVIGFYinlpeggqyapkpphfvwykgqryvcapdskedppkvvpgseisffkngvcqgvafkdlyggryypaasmyslpnqpncvvkfnfgpdfecfpddfgerpvpspmaevpyhgfdsrvengvpnekkh
mdslqasyredddeeeppqlpstppqndgaQETQAETddvakepepspkadavrepESLDDSAEeanheplpqpepMVRDSVTENDAQEPASGNDVALEVEAQRDPVVSDSITenaaaqgreppndVAREALPEAEPMVNDSVSEEEAEEAEThngavqeaqpdiqpEPMISESVSEDDPtasddtqkspkrdsiaaqnddveeeddedddpppkKQKPLSSLTTLHEQQALEqqqqtpvtnnnsiSKANLapssgtaakkskkknnnvwvsrttrkgkkknktntqkevspedtvlitpvprfpdkgddnpEMKICLSKvykaekvelsddrltagstkgyrmvraTRGVVEGAWYYEIKVVALGETGHTRLGWstekgdlqapvgydgnsfgyrdidgsKVHKALREKYGEEGYKEGDVIGFYINLPEGGQYAPKPPHFVWYKGQRYVCAPDSKEDPPKVVPGSEISFFKNGVCQGVAFKDLYGGRYYPAASMYSLPNQPNCVVKFNFGPDFECFPDDFGERPVPSPMAevpyhgfdsrvengvpnekkh
MDSLQASYRedddeeePPQLPSTPPQNDGAQETQAETDDVAKEPEPSPKADAVREPESLDDSAEEANHEPLPQPEPMVRDSVTENDAQEPASGNDVALEVEAQRDPVVSDSITENAAAQGREPPNDVAREALPEAEPMVNDSVSeeeaeeaeTHNGAVQEAQPDIQPEPMISESVSEDDPTASDDTQKSPKRDSIAAQNddveeeddedddpppKKQKPLSSlttlheqqaleqqqqtPVTNNNSISKANLAPSSGTAAkkskkknnnVWVSrttrkgkkknktntqkEVSPEDTVLITPVPRFPDKGDDNPEMKICLSKVYKAEKVELSDDRLTAGSTKGYRMVRATRGVVEGAWYYEIKVVALGETGHTRLGWSTEKGDLQAPVGYDGNSFGYRDIDGSKVHKALRekygeegykegDVIGFYINLPEGGQYAPKPPHFVWYKGQRYVCAPDSKEDPPKVVPGSEISFFKNGVCQGVAFKDLYGGRYYPAASMYSLPNQPNCVVKFNFGPDFECFPDDFGERPVPSPMAEVPYHGFDSRVENGVPNEKKH
**************************************************************************************************************************************************************************************************************************************************************************************************************************KICLSKVYKAEKVELSDDRLTAGSTKGYRMVRATRGVVEGAWYYEIKVVALGETGHTRLGWSTEKGDLQAPVGYDGNSFGYRDIDGSKVHKALREKYGEEGYKEGDVIGFYINLPEGGQYAPKPPHFVWYKGQRYVCA***********PGSEISFFKNGVCQGVAFKDLYGGRYYPAASMYSLPNQPNCVVKFNFGPDFECFPDDF*******************************
*************************************************************************************************************************************************************************************************************************************************************************************************VSPEDTVLITPVPRFPDKGDDNPEMKICLSKVYKAEKVELSDDRLTAGSTKGYRMVRATRGVVEGAWYYEIKVVALGETGHTRLGWSTEKGDLQAPVGYDGNSFGYRDIDGSKVHKALREKYGEEGYKEGDVIGFYINLPEGGQYAPKPPHFVWYKGQRYVCAPDSK****KVVPGSEISFFKNGVCQGVAFKDLYGGRYYPAASMYSLPNQPNCVVKFNFGPDFECFPDDFGERPVPSPMAEVPYHG***************
**********************************************************************LPQPEPMVRDSVTENDAQEPASGNDVALEVEAQRDPVVSDSITENAAAQGREPPNDVAREALPE************************QEAQPDIQPEPMIS**************************************************LTTLH***************NNSISKANLA***************NVWVSRT*******************DTVLITPVPRFPDKGDDNPEMKICLSKVYKAEKVELSDDRLTAGSTKGYRMVRATRGVVEGAWYYEIKVVALGETGHTRLGWSTEKGDLQAPVGYDGNSFGYRDIDGSKVHKALREKYGEEGYKEGDVIGFYINLPEGGQYAPKPPHFVWYKGQRYVCAPDSKEDPPKVVPGSEISFFKNGVCQGVAFKDLYGGRYYPAASMYSLPNQPNCVVKFNFGPDFECFPDDFGERPVPSPMAEVPYHGFDSRVENGVPNEKKH
********************************************************************EP**QPE**************************************************************************************************************************************************************************************************************************DTVLITPVPRFPDKGDDNPEMKICLSKVYKAEKVELSDDRLTAGSTKGYRMVRATRGVVEGAWYYEIKVVALGETGHTRLGWSTEKGDLQAPVGYDGNSFGYRDIDGSKVHKALREKYGEEGYKEGDVIGFYINLPEGGQYAPKPPHFVWYKGQRYVCAPDSKEDPPKVVPGSEISFFKNGVCQGVAFKDLYGGRYYPAASMYSLPNQPNCVVKFNFGPDFECFPDDFGERPVPSPMAEVPYHGFDSRVENGVP*****
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MDSLQASYREDDDEEEPPQLPSTPPQNDGAQETQAETDDVAKEPEPSPKADAVREPESLDDSAEEANHEPLPQPEPMVRDSVTENDAQEPASGNDVALEVEAQRDPVVSDSITENAAAQGREPPNDVAREALPEAEPMVNDSVSEEEAEEAETHNGAVQEAQPDIQPEPMISESVSEDDPTASDDTQKSPKRDSIAAQNDDVEEEDDEDDDPPPKKQKPLSSLTTLHEQQALEQQQQTPVTNNNSISKANLAPSSGTAAKKSKKKNNNVWVSRTTRKGKKKNKTNTQKEVSPEDTVLITPVPRFPDKGDDNPEMKICLSKVYKAEKVELSDDRLTAGSTKGYRMVRATRGVVEGAWYYEIKVVALGETGHTRLGWSTEKGDLQAPVGYDGNSFGYRDIDGSKVHKALREKYGEEGYKEGDVIGFYINLPEGGQYAPKPPHFVWYKGQRYVCAPDSKEDPPKVVPGSEISFFKNGVCQGVAFKDLYGGRYYPAASMYSLPNQPNCVVKFNFGPDFECFPDDFGERPVPSPMAEVPYHGFDSRVENGVPNEKKH
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query552 2.2.26 [Sep-21-2011]
Q9UBL3628 Set1/Ash2 histone methylt yes no 0.385 0.339 0.407 2e-42
Q91X20623 Set1/Ash2 histone methylt yes no 0.385 0.341 0.399 6e-42
O60070652 Set1 complex component as yes no 0.349 0.296 0.334 4e-22
Q6VN20 620 Ran-binding protein 10 OS no no 0.172 0.153 0.333 4e-06
A3KMV8 620 Ran-binding protein 10 OS no no 0.172 0.153 0.333 5e-06
Q6VN19 620 Ran-binding protein 10 OS no no 0.172 0.153 0.333 5e-06
Q9PTY5 548 Ran-binding protein 9 OS= N/A no 0.172 0.173 0.323 8e-06
Q28FM1 548 Ran-binding protein 9 OS= no no 0.172 0.173 0.323 9e-06
Q1LUS8 604 Ran-binding protein 10 OS no no 0.172 0.157 0.323 2e-05
Q4Z8K6 962 Ran-binding proteins 9/10 no no 0.213 0.122 0.221 2e-05
>sp|Q9UBL3|ASH2L_HUMAN Set1/Ash2 histone methyltransferase complex subunit ASH2 OS=Homo sapiens GN=ASH2L PE=1 SV=1 Back     alignment and function desciption
 Score =  174 bits (440), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 99/243 (40%), Positives = 140/243 (57%), Gaps = 30/243 (12%)

Query: 315 KICLSKVYKAEKVELSDDRLTAGSTKGYRMVRATRGVVEGAWYYEIKVVALGETGHTRLG 374
           ++ L+   +A ++++SDDRLT    KGY MVRA+ GV +GAWY+EI V  +      RLG
Sbjct: 380 RVLLALHDRAPQLKISDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLG 439

Query: 375 WSTEKGDLQAPVGYDGNSFGYRDIDGSKVHKALREKYGEEGYKEGDVIGFYINLPEGGQY 434
           WS   G+LQAP+GYD  S+ +R   G+K H+++ + Y   GY +GDV+GFYINLPE  + 
Sbjct: 440 WSQPLGNLQAPLGYDKFSYSWRSKKGTKFHQSIGKHY-SSGYGQGDVLGFYINLPEDTET 498

Query: 435 APKPP------------HFVWYKGQRYVCAPDSKEDPPKVVPGSEISFFKNGVCQGVAFK 482
           A   P             +++++ + +V   D  E   K  P SEI F+KNGV QGVA+K
Sbjct: 499 AKSLPDTYKDKALIKFKSYLYFEEKDFV---DKAEKSLKQTPHSEIIFYKNGVNQGVAYK 555

Query: 483 DLYGGRYYPAASMYSLPNQPNCVVKFNFGPDFECFPDDFGERP---------VPSPMAEV 533
           D++ G Y+PA S+Y      +C V  NFGP F+  P D   RP         V   +A+V
Sbjct: 556 DIFEGVYFPAISLYK-----SCTVSINFGPCFKYPPKDLTYRPMSDMGWGAVVEHTLADV 610

Query: 534 PYH 536
            YH
Sbjct: 611 LYH 613
Component of the Set1/Ash2 histone methyltransferase (HMT) complex, a complex that specifically methylates 'Lys-4' of histone H3, but not if the neighboring 'Lys-9' residue is already methylated. As part of the MLL1/MLL complex it is involved in methylation and dimethylation at 'Lys-4' of histone H3. May function as a transcriptional regulator. May play a role in hematopoiesis.
Homo sapiens (taxid: 9606)
>sp|Q91X20|ASH2L_MOUSE Set1/Ash2 histone methyltransferase complex subunit ASH2 OS=Mus musculus GN=Ash2l PE=1 SV=1 Back     alignment and function description
>sp|O60070|ASH2_SCHPO Set1 complex component ash2 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=ash2 PE=4 SV=1 Back     alignment and function description
>sp|Q6VN20|RBP10_HUMAN Ran-binding protein 10 OS=Homo sapiens GN=RANBP10 PE=1 SV=1 Back     alignment and function description
>sp|A3KMV8|RBP10_BOVIN Ran-binding protein 10 OS=Bos taurus GN=RANBP10 PE=2 SV=1 Back     alignment and function description
>sp|Q6VN19|RBP10_MOUSE Ran-binding protein 10 OS=Mus musculus GN=Ranbp10 PE=1 SV=2 Back     alignment and function description
>sp|Q9PTY5|RANB9_XENLA Ran-binding protein 9 OS=Xenopus laevis GN=ranbp9 PE=2 SV=1 Back     alignment and function description
>sp|Q28FM1|RANB9_XENTR Ran-binding protein 9 OS=Xenopus tropicalis GN=ranbp9 PE=2 SV=1 Back     alignment and function description
>sp|Q1LUS8|RBP10_DANRE Ran-binding protein 10 OS=Danio rerio GN=ranbp10 PE=3 SV=1 Back     alignment and function description
>sp|Q4Z8K6|RBP9X_DROME Ran-binding proteins 9/10 homolog OS=Drosophila melanogaster GN=RanBPM PE=1 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query552
255544912450 conserved hypothetical protein [Ricinus 0.679 0.833 0.744 1e-154
224059544465 predicted protein [Populus trichocarpa] 0.675 0.802 0.720 1e-152
224104177469 predicted protein [Populus trichocarpa] 0.673 0.793 0.728 1e-152
449442543433 PREDICTED: uncharacterized protein LOC10 0.670 0.854 0.733 1e-151
356543622461 PREDICTED: set1/Ash2 histone methyltrans 0.673 0.806 0.699 1e-148
297847518503 SPla/RYanodine receptor domain-containin 0.675 0.741 0.702 1e-145
15223851509 TRAUCO protein [Arabidopsis thaliana] gi 0.833 0.903 0.587 1e-145
225435387389 PREDICTED: set1/Ash2 histone methyltrans 0.612 0.868 0.752 1e-144
356540934460 PREDICTED: set1/Ash2 histone methyltrans 0.668 0.802 0.676 1e-143
449531489259 PREDICTED: set1/Ash2 histone methyltrans 0.458 0.976 0.873 1e-134
>gi|255544912|ref|XP_002513517.1| conserved hypothetical protein [Ricinus communis] gi|223547425|gb|EEF48920.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  551 bits (1420), Expect = e-154,   Method: Compositional matrix adjust.
 Identities = 285/383 (74%), Positives = 317/383 (82%), Gaps = 8/383 (2%)

Query: 175 VSEDDPTASDDTQKSPKRDSIAAQNDDVEEEDDEDDDPPPKKQKPLSSLTTLHEQQALEQ 234
           VSE DPT S+DT+K   +D+     +D EE+DD++++PPPKKQK LSSLT   +Q+  ++
Sbjct: 71  VSESDPTTSNDTEKPTPKDNEQEVEEDEEEDDDDEEEPPPKKQKQLSSLTQ--QQEQQQE 128

Query: 235 QQQTPVTNNN-----SISKANLAPSSGTAAKKSKKKNNNVWVSRTTRKGKKKNKTNTQKE 289
           Q+  PV NNN               + T  K  KK NNNVWV+R+TRKGKKK K N Q  
Sbjct: 129 QEPAPVDNNNVSNETKTPTLTTTKQAATKKKSKKKNNNNVWVTRSTRKGKKKTKPNPQNT 188

Query: 290 VSPEDTVLITPVPRFPDKGDDNPEMKICLSKVYKAEKVELSDDRLTAGSTKGYRMVRATR 349
            + EDTVLITPVPR  DK DD P+M ICLSKVYKAEKVELS+DRL+A STKGYRMVRATR
Sbjct: 189 PA-EDTVLITPVPRLQDKSDDTPDMNICLSKVYKAEKVELSEDRLSAASTKGYRMVRATR 247

Query: 350 GVVEGAWYYEIKVVALGETGHTRLGWSTEKGDLQAPVGYDGNSFGYRDIDGSKVHKALRE 409
           GV EGAWY+EIKVV+LGETGHTRLGWSTEKGDLQAPVGYDGNSFGYRDIDGSKVHKALRE
Sbjct: 248 GVCEGAWYFEIKVVSLGETGHTRLGWSTEKGDLQAPVGYDGNSFGYRDIDGSKVHKALRE 307

Query: 410 KYGEEGYKEGDVIGFYINLPEGGQYAPKPPHFVWYKGQRYVCAPDSKEDPPKVVPGSEIS 469
           KYGEEGYKEGDVIGFYINLP+G  YAPKPPH VWYKGQRYVCA DSKEDPPK++PGSEIS
Sbjct: 308 KYGEEGYKEGDVIGFYINLPDGSLYAPKPPHLVWYKGQRYVCAADSKEDPPKIIPGSEIS 367

Query: 470 FFKNGVCQGVAFKDLYGGRYYPAASMYSLPNQPNCVVKFNFGPDFECFPDDFGERPVPSP 529
           FFKNGVCQGVAFKDLYGG YYPAAS+Y+LPNQPNCVVKFNFGPDFE FP+DFG RP+P P
Sbjct: 368 FFKNGVCQGVAFKDLYGGHYYPAASVYTLPNQPNCVVKFNFGPDFEFFPEDFGGRPIPRP 427

Query: 530 MAEVPYHGFDSRVENGVPNEKKH 552
           M EVPYHGFD+RVENGV NE KH
Sbjct: 428 MFEVPYHGFDNRVENGVSNENKH 450

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|224059544|ref|XP_002299899.1| predicted protein [Populus trichocarpa] gi|222847157|gb|EEE84704.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224104177|ref|XP_002313348.1| predicted protein [Populus trichocarpa] gi|222849756|gb|EEE87303.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449442543|ref|XP_004139041.1| PREDICTED: uncharacterized protein LOC101214790 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356543622|ref|XP_003540259.1| PREDICTED: set1/Ash2 histone methyltransferase complex subunit ASH2-like [Glycine max] Back     alignment and taxonomy information
>gi|297847518|ref|XP_002891640.1| SPla/RYanodine receptor domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297337482|gb|EFH67899.1| SPla/RYanodine receptor domain-containing protein [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|15223851|ref|NP_175556.1| TRAUCO protein [Arabidopsis thaliana] gi|12325374|gb|AAG52633.1|AC024261_20 unknown protein; 66348-64527 [Arabidopsis thaliana] gi|66792638|gb|AAY56421.1| At1g51450 [Arabidopsis thaliana] gi|110738234|dbj|BAF01046.1| hypothetical protein [Arabidopsis thaliana] gi|332194548|gb|AEE32669.1| TRAUCO protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|225435387|ref|XP_002282630.1| PREDICTED: set1/Ash2 histone methyltransferase complex subunit ASH2 [Vitis vinifera] gi|297746293|emb|CBI16349.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|356540934|ref|XP_003538939.1| PREDICTED: set1/Ash2 histone methyltransferase complex subunit ASH2-like [Glycine max] Back     alignment and taxonomy information
>gi|449531489|ref|XP_004172718.1| PREDICTED: set1/Ash2 histone methyltransferase complex subunit ASH2-like, partial [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query552
TAIR|locus:2033954509 TRO "TRAUCO" [Arabidopsis thal 0.889 0.964 0.496 7.4e-121
UNIPROTKB|F1NLI7612 ASH2L "Uncharacterized protein 0.373 0.336 0.407 4.4e-40
UNIPROTKB|F5H8F7489 ASH2L "Set1/Ash2 histone methy 0.373 0.421 0.411 4e-39
UNIPROTKB|I3L7I5607 ASH2L "Uncharacterized protein 0.373 0.339 0.407 2.2e-38
UNIPROTKB|Q9UBL3628 ASH2L "Set1/Ash2 histone methy 0.373 0.328 0.411 3.1e-38
UNIPROTKB|E1BEP4629 ASH2L "Uncharacterized protein 0.373 0.327 0.411 3.1e-38
MGI|MGI:1344416623 Ash2l "ash2 (absent, small, or 0.373 0.330 0.402 5.2e-38
RGD|1305632623 Ash2l "ash2 (absent, small, or 0.373 0.330 0.407 6.2e-38
UNIPROTKB|E2R3Y0630 ASH2L "Uncharacterized protein 0.373 0.326 0.403 1e-36
FB|FBgn0000139572 ash2 "absent, small, or homeot 0.344 0.332 0.370 6.5e-28
TAIR|locus:2033954 TRO "TRAUCO" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 1189 (423.6 bits), Expect = 7.4e-121, P = 7.4e-121
 Identities = 251/506 (49%), Positives = 310/506 (61%)

Query:    53 VREPESLDDSAEEANHE-PLPQ-PEPMVRDSVTENDAQEPASGNDVALEVEAQRDPVVSD 110
             + E E  +   EEA     LP+ P  ++  S   +D+  P S + V   +E   +  VS 
Sbjct:    10 IEEAEQ-NPKIEEAQVSVSLPEEPTGVLLPSELVDDSAPPESSDAVEESIETASEAEVSI 68

Query:   111 SITENAAAQGREPPNDVAREALPEAEPMVNDSVSXXXXXXXXTHNGAVQEAQP--DIQPE 168
             S+ E         P++    A  E+  ++ + +             A+   QP  D++ E
Sbjct:    69 SLLEGTTTGTALLPSEENDLAPLESSGIIEEPIDTDLEKLDVV---AMDVDQPGSDLKIE 125

Query:   169 PMISESVSEDDPT-ASDDTQKSPKRDSIAAQNXXXXXXXXXXXXXXXKKQKPLSSXXXXX 227
                S+S SE+ PT +S D  KSPK DS+A QN                  K L       
Sbjct:   126 ---SDSFSEEAPTTSSSDNPKSPKLDSVANQNGSAMEEDEGDEEQDDPPHKKLKQLDCLT 182

Query:   228 XXXXXXXXXXXPVTNNNS--ISKANLAPSSGTAAXXXXXXXXXVWVSXXXXXXXXXXXXX 285
                         V  + +  + +A    +S             VWV+             
Sbjct:   183 SVAVKEEEEPEQVLPSEAMVVEEAATLVASAAKKSKSKKKNNNVWVTKSTRKGKKKSKAN 242

Query:   286 XXXEVSPEDTVLITPVPRFPDKGDDNPEMKICLSKVYKAEKVELSDDRLTAGSTKGYRMV 345
                  + ED VLITPVPRFPDKGDD P+++ICLSKVYKAEKVE+S+DRLTAGS+KGYRMV
Sbjct:   243 TPNPAAVEDKVLITPVPRFPDKGDDTPDLEICLSKVYKAEKVEISEDRLTAGSSKGYRMV 302

Query:   346 RATRGVVEGAWYYEIKVVALGETGHTRLGWSTEKGDLQAPVGYDGNSFGYRDIDGSKVHK 405
             RATRGVVEGAWY+EIKV++LGETGHTRLGWST+KGDLQAPVGYDGNSFG+RDIDG K+HK
Sbjct:   303 RATRGVVEGAWYFEIKVLSLGETGHTRLGWSTDKGDLQAPVGYDGNSFGFRDIDGCKIHK 362

Query:   406 ALRXXXXXXXXXXXDVIGFYINLPEGGQYAPKPPHFVWYKGQRYVCAPDSKEDPPKVVPG 465
             ALR           DVIGFYINLP+G  +APKPPH+V+YKGQRY+CAPD+KE+PPKVVPG
Sbjct:   363 ALRETYAEEGYKEGDVIGFYINLPDGESFAPKPPHYVFYKGQRYICAPDAKEEPPKVVPG 422

Query:   466 SEISFFKNGVCQGVAFKDLYGGRYYPAASMYSLPNQPNCVVKFNFGPDFECFPDDFGERP 525
             SEISFFKNGVCQG AF D+ GGRYYPAASMY+LP+Q NC+VKFNFGP FE FP+DFG R 
Sbjct:   423 SEISFFKNGVCQGAAFTDIVGGRYYPAASMYTLPDQSNCLVKFNFGPSFEFFPEDFGGRA 482

Query:   526 VPSPMAEVPYHGFDSRVE-NGVPNEK 550
              P PM EVPYHGF+ R+E NG  + K
Sbjct:   483 TPRPMWEVPYHGFNGRLETNGSEDMK 508
GO:0005576 "extracellular region" evidence=ISM
GO:0005634 "nucleus" evidence=IDA
GO:0009790 "embryo development" evidence=IMP
GO:0016571 "histone methylation" evidence=IGI
GO:0009793 "embryo development ending in seed dormancy" evidence=IMP
GO:0010228 "vegetative to reproductive phase transition of meristem" evidence=IMP
GO:0031490 "chromatin DNA binding" evidence=IDA
GO:0048188 "Set1C/COMPASS complex" evidence=IPI
GO:0060776 "simple leaf morphogenesis" evidence=IMP
GO:0080182 "histone H3-K4 trimethylation" evidence=IMP
UNIPROTKB|F1NLI7 ASH2L "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
UNIPROTKB|F5H8F7 ASH2L "Set1/Ash2 histone methyltransferase complex subunit ASH2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|I3L7I5 ASH2L "Uncharacterized protein" [Sus scrofa (taxid:9823)] Back     alignment and assigned GO terms
UNIPROTKB|Q9UBL3 ASH2L "Set1/Ash2 histone methyltransferase complex subunit ASH2" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E1BEP4 ASH2L "Uncharacterized protein" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
MGI|MGI:1344416 Ash2l "ash2 (absent, small, or homeotic)-like (Drosophila)" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
RGD|1305632 Ash2l "ash2 (absent, small, or homeotic)-like (Drosophila)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms
UNIPROTKB|E2R3Y0 ASH2L "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
FB|FBgn0000139 ash2 "absent, small, or homeotic discs 2" [Drosophila melanogaster (taxid:7227)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Your Input:
gw1.I.1482.1
hypothetical protein (385 aa)
(Populus trichocarpa)
Predicted Functional Partners:
 
Sorry, there are no predicted associations at the current settings.
 

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query552
cd12872149 cd12872, SPRY_Ash2, SPRY domain in Ash2 2e-78
cd11709118 cd11709, SPRY, SPRY domain 3e-23
pfam00622125 pfam00622, SPRY, SPRY domain 4e-23
smart00449122 smart00449, SPRY, Domain in SPla and the RYanodine 1e-22
cd12884176 cd12884, SPRY_hnRNP, SPRY domain in heterogeneous 2e-20
cd12885132 cd12885, SPRY_RanBP_like, SPRY domain in Ran bindi 2e-20
cd12873155 cd12873, SPRY_DDX1, SPRY domain associated with DE 5e-20
cd12882128 cd12882, SPRY_RNF123, SPRY domain at N-terminus of 7e-16
cd12909153 cd12909, SPRY_RanBP9_10, SPRY domain in Ran bindin 8e-12
cd12876187 cd12876, SPRY_SOCS3, SPRY domain in the suppressor 3e-09
cd12878133 cd12878, SPRY2_RyR, SPRY domain 2 (SPRY2) of ryano 9e-09
cd12883121 cd12883, SPRY_RING, SPRY domain at N-terminus of R 4e-08
cd12886128 cd12886, SPRY_like, SPRY domain-like in bacteria 1e-05
COG5271 4600 COG5271, MDN1, AAA ATPase containing von Willebran 2e-04
PRK108111068 PRK10811, rne, ribonuclease E; Reviewed 5e-04
COG5271 4600 COG5271, MDN1, AAA ATPase containing von Willebran 7e-04
cd12880160 cd12880, SPRYD7, SPRY domain-containing protein 7 9e-04
PRK14949 944 PRK14949, PRK14949, DNA polymerase III subunits ga 0.002
COG4547620 COG4547, CobT, Cobalamin biosynthesis protein CobT 0.003
>gnl|CDD|240452 cd12872, SPRY_Ash2, SPRY domain in Ash2 Back     alignment and domain information 
 Score =  243 bits (622), Expect = 2e-78
 Identities = 87/190 (45%), Positives = 106/190 (55%), Gaps = 44/190 (23%)

Query: 327 VELSDDRLTAGSTKGYRMVRATRGVVEGAWYYEIKVVALG-ETGHTRLGWSTEKGDLQAP 385
           ++LS+DRLT    KGYRM RA  GV EG WY+E+K++  G ETGH R+GWS  +  LQAP
Sbjct: 1   LKLSEDRLTVTGEKGYRMARANHGVREGKWYFEVKILEGGGETGHVRVGWSRREASLQAP 60

Query: 386 VGYDGNSFGYRDIDGSKVHKALREKYGEEGYKEGDVIGFYINLPEGGQYAPKPPHFVWYK 445
           VGYD  S+ YRD DG K H +  + YGE G+KEGDVIG  I LP                
Sbjct: 61  VGYDKYSYAYRDKDGEKFHLSRGKPYGEPGFKEGDVIGCLITLP---------------- 104

Query: 446 GQRYVCAPDSKEDPPKVVPGSEISFFKNGVCQGVAFKDLYG-GRYYPAASMYSLPNQPNC 504
                                +I FFKNG  QGVAF+D+YG G YYPA S+Y        
Sbjct: 105 ---------------------KIEFFKNGKSQGVAFEDIYGTGGYYPAVSLYM-----GA 138

Query: 505 VVKFNFGPDF 514
            V+ NFGP+F
Sbjct: 139 TVRLNFGPNF 148

This SPRY domain is found at the C-terminus of Ash2 (absent, small, or homeotic discs 2) -like proteins, core components of all mixed-lineage leukemia (MLL) family histone methyltransferases. Ash2 is a member of the trithorax group of transcriptional regulators of the Hox genes. Recent studies show that the SPRY domain of Ash2 mediates the interaction with RbBP5 and has an important role in regulating the methyltransferase activity of MLL complexes. In yeast, Ash2 is involved in histone methylation and is required for the earliest stages of embryogenesis. Length = 149
>gnl|CDD|240451 cd11709, SPRY, SPRY domain Back     alignment and domain information
>gnl|CDD|216029 pfam00622, SPRY, SPRY domain Back     alignment and domain information
>gnl|CDD|214669 smart00449, SPRY, Domain in SPla and the RYanodine Receptor Back     alignment and domain information
>gnl|CDD|240464 cd12884, SPRY_hnRNP, SPRY domain in heterogeneous nuclear ribonucleoprotein U-like (hnRNP) protein 1 Back     alignment and domain information
>gnl|CDD|240465 cd12885, SPRY_RanBP_like, SPRY domain in Ran binding proteins, SSH4, HECT E3 and SPRYD3 Back     alignment and domain information
>gnl|CDD|240453 cd12873, SPRY_DDX1, SPRY domain associated with DEAD box gene DDX1 Back     alignment and domain information
>gnl|CDD|240462 cd12882, SPRY_RNF123, SPRY domain at N-terminus of ring finger protein 123 Back     alignment and domain information
>gnl|CDD|240489 cd12909, SPRY_RanBP9_10, SPRY domain in Ran binding proteins 9 and 10 Back     alignment and domain information
>gnl|CDD|240456 cd12876, SPRY_SOCS3, SPRY domain in the suppressor of cytokine signaling 3 (SOCS3) family Back     alignment and domain information
>gnl|CDD|240458 cd12878, SPRY2_RyR, SPRY domain 2 (SPRY2) of ryanodine receptor (RyR) Back     alignment and domain information
>gnl|CDD|240463 cd12883, SPRY_RING, SPRY domain at N-terminus of Really Interesting New Gene (RING) finger domain Back     alignment and domain information
>gnl|CDD|240466 cd12886, SPRY_like, SPRY domain-like in bacteria Back     alignment and domain information
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] Back     alignment and domain information
>gnl|CDD|236766 PRK10811, rne, ribonuclease E; Reviewed Back     alignment and domain information
>gnl|CDD|227596 COG5271, MDN1, AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only] Back     alignment and domain information
>gnl|CDD|240460 cd12880, SPRYD7, SPRY domain-containing protein 7 Back     alignment and domain information
>gnl|CDD|237863 PRK14949, PRK14949, DNA polymerase III subunits gamma and tau; Provisional Back     alignment and domain information
>gnl|CDD|226920 COG4547, CobT, Cobalamin biosynthesis protein CobT (nicotinate-mononucleotide:5, 6-dimethylbenzimidazole phosphoribosyltransferase) [Coenzyme metabolism] Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 552
KOG2626544 consensus Histone H3 (Lys4) methyltransferase comp 100.0
KOG0349 725 consensus Putative DEAD-box RNA helicase DDX1 [RNA 99.93
smart00449122 SPRY Domain in SPla and the RYanodine Receptor. Do 99.92
PF00622124 SPRY: SPRY domain; InterPro: IPR003877 The SPRY do 99.92
KOG3953242 consensus SOCS box protein SSB-1, contains SPRY do 99.8
KOG4030197 consensus Uncharacterized conserved protein, conta 99.79
KOG2243 5019 consensus Ca2+ release channel (ryanodine receptor 99.63
KOG4367699 consensus Predicted Zn-finger protein [Function un 99.6
KOG1477 469 consensus SPRY domain-containing proteins [General 99.33
KOG2243 5019 consensus Ca2+ release channel (ryanodine receptor 99.14
KOG1477 469 consensus SPRY domain-containing proteins [General 97.98
KOG2242 558 consensus Scaffold/matrix specific factor hnRNP-U/ 96.44
PF0717769 Neuralized: Neuralized; InterPro: IPR006573 NEUZ i 94.26
smart00588123 NEUZ domain in neuralized proteins. 93.61
>KOG2626 consensus Histone H3 (Lys4) methyltransferase complex, subunit CPS60/ASH2/BRE2 [Chromatin structure and dynamics; Transcription] Back     alignment and domain information 
Probab=100.00  E-value=9.5e-57  Score=476.09  Aligned_cols=368  Identities=36%  Similarity=0.602  Sum_probs=314.6

Q ss_pred             CCccCCCCCCCCCCC-CCCCCCCC-cchhhccCCCCcC---CCCCCCCCCCCCCCCCCCccchhHHhhhhhcccCccccc
Q 035919          169 PMISESVSEDDPTAS-DDTQKSPK-RDSIAAQNDDVEE---EDDEDDDPPPKKQKPLSSLTTLHEQQALEQQQQTPVTNN  243 (552)
Q Consensus       169 ~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  243 (552)
                      ..++++|+.+.+|+. -+..+.+. ....++||.+-.+   ++..+..++.++.||+..+++.......+.....+ .+.
T Consensus       143 ~~~~~~~~ke~~t~~~~~~~~~~~~~~al~~~nl~~~~p~~~~~~~~~~~~~~~~q~~~~p~~~~~k~r~a~~~~p-~~~  221 (544)
T KOG2626|consen  143 TNLSDTLSKERDTYFEVEEHRDPGKLFALANQNLSNIGPSYDEVQSGIGAKMHKKQVDETPPLSSGKCREASREAP-SEA  221 (544)
T ss_pred             hhhhhhhhhcccceeEEeccCCCcchhhhcccchhhcCccccchhhcccccccccccCCCCCcccccccccccccc-CCC
Confidence            356778998888776 55555665 7778888885543   33345667777777899999887655555666666 366


Q ss_pred             cccccccccCCccccccccccccCCccccccccccccccCCCCCCCCCCCCcccCCCCCCCCCCCCCCCCceEEeCCCcc
Q 035919          244 NSISKANLAPSSGTAAKKSKKKNNNVWVSRTTRKGKKKNKTNTQKEVSPEDTVLITPVPRFPDKGDDNPEMKICLSKVYK  323 (552)
Q Consensus       244 ~~~~~~~~~~~~~~~~~k~~k~~~~vW~~~~~rk~~kk~~~~~~~~~~~ed~~lisP~P~~~~~~dd~p~~~V~LS~~~k  323 (552)
                      .+...++...+. +...++|+++++||.....+|.++|-.-+-+.+...++..++.|+|.+.+.....+...|+|++.++
T Consensus       222 ~v~g~~~r~~sd-~~~s~~k~p~~~v~~~~p~~k~~~~~~l~e~~P~~p~~~~~ak~iP~~~yr~l~~~~~tv~l~~hdr  300 (544)
T KOG2626|consen  222 PVTGKKIKLISD-AKESIHKPPNGCVPIEHPFSKDGYRYILAEPDPSAPEDIKFAKPIPGFLYRALLSPMDTVNLSWHDR  300 (544)
T ss_pred             Ccccccceehhh-cccccccCCCCCccccCCCCCCCceeeEeccCCCCcccccccccCCcchhhhhcCchhhhhhhhhcc
Confidence            666666666665 5567788889999999999999999887777666677777899999999998888888999999999


Q ss_pred             CCcEEEcCCCcEEEeCCCcceEEeccceecCeEEEEEEEEEeCCCCcEEEEEecCCCCCCCCCCCCCCeEEEEeCCCcEE
Q 035919          324 AEKVELSDDRLTAGSTKGYRMVRATRGVVEGAWYYEIKVVALGETGHTRLGWSTEKGDLQAPVGYDGNSFGYRDIDGSKV  403 (552)
Q Consensus       324 s~~I~LS~DgLTVtg~kGyrsVRAT~GVssGkwYFEVkIvs~G~sG~IrIGwATr~a~LqapVG~D~~SyGYrg~DGkk~  403 (552)
                      ++++.||.|+|++++.+||+||||+|||..|.|||||+|..+..++|+||||++..++|+++||||.+|||||+.+|++|
T Consensus       301 A~ql~Is~drlt~tgeKGy~MvRAshgv~~G~WYFEI~vd~~pd~~a~RlGwsq~~g~LqApvGYdkfsY~wRdk~GtKf  380 (544)
T KOG2626|consen  301 AEQLKISEDRLTATGEKGYRMVRASHGVLEGAWYFEIKVDEMPDDAAIRLGWSQLYGNLQAPVGYDKFSYGWRDKKGTKF  380 (544)
T ss_pred             cccccccccceeeecccceeeeeecccccccceeEEEEeecCCCccceeeeccccccccccccccccccccccccCCcch
Confidence            99999999999999999999999999999999999999999888899999999999999999999999999999999999


Q ss_pred             eCCcccccCCCCCCCCCEEEEEEECCCCCCC---CC---CCCCccccccccceecCCCC---CCCCCCCCCcEEEEEECC
Q 035919          404 HKALREKYGEEGYKEGDVIGFYINLPEGGQY---AP---KPPHFVWYKGQRYVCAPDSK---EDPPKVVPGSEISFFKNG  474 (552)
Q Consensus       404 Hng~~e~YG~~~f~eGDVIGCgIDL~~Gt~~---~p---k~~~Li~~kg~l~l~~~~~~---e~p~~~~~GSeI~FTKNG  474 (552)
                      |.++++.|-. +|++||||||+|+|+.+...   .|   |...||.||+.+|+++++..   +++....+||+|.|+|||
T Consensus       381 h~s~gk~Y~~-gf~qGDvLGf~I~LP~~~~~~~~lp~~~kdk~lI~yK~~lyfe~~d~v~k~~k~l~~~pgS~I~f~KNG  459 (544)
T KOG2626|consen  381 HESLGKHYSD-GFGQGDVLGFYINLPKDLSPEKYLPLTHKDKFLIKYKGHLYFEDPDNVAKIEKTLKIKPGSEIEFFKNG  459 (544)
T ss_pred             hhhhhhhhhh-hccCCceEEEEEecCCcccccccCCccccccceeeeeeeeEEEccchhhhhhhccccCCCceEEEeecc
Confidence            9999999996 99999999999999988652   12   33458999999999998875   667788999999999999


Q ss_pred             eEeeeceeecC-CCcEEEEEEEccCCCCCCcEEEEECCCCCccCCCCCCCCC--CCCC-cccCCCCcccceeec
Q 035919          475 VCQGVAFKDLY-GGRYYPAASMYSLPNQPNCVVKFNFGPDFECFPDDFGERP--VPSP-MAEVPYHGFDSRVEN  544 (552)
Q Consensus       475 k~LGvAFkdI~-gG~LYPAVSL~tlp~~~g~~VrfNFGp~F~F~Ppdf~~rP--~p~P-m~e~p~~~~~~~~~~  544 (552)
                      ++||+||+||+ .|.||||||||+     +|+|+||||+.|+|+|.+++.++  |... |.++++|.+...++.
T Consensus       460 ~~qG~Ay~ni~~~G~YyPaIS~yk-----s~tv~~nfGP~F~~~p~~lg~~~~~m~~~~~eqi~E~~l~DiLy~  528 (544)
T KOG2626|consen  460 VSQGVAYENIYKAGAYYPAISIYK-----SCTVKFNFGPQFRYPPCVLGNRAVGMSDRYKEQIAEDTLADILYE  528 (544)
T ss_pred             cchhhhhhhhhccccccceeeecc-----cceEEEeccccccCCccccCCCcccccchhhhhHHHHHHHHHHHH
Confidence            99999999999 589999999997     89999999999999999999998  6666 778888887776554

>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification] Back     alignment and domain information
>smart00449 SPRY Domain in SPla and the RYanodine Receptor Back     alignment and domain information
>PF00622 SPRY: SPRY domain; InterPro: IPR003877 The SPRY domain is of unknown function Back     alignment and domain information
>KOG3953 consensus SOCS box protein SSB-1, contains SPRY domain [General function prediction only] Back     alignment and domain information
>KOG4030 consensus Uncharacterized conserved protein, contains SPRY domain [Function unknown] Back     alignment and domain information
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms] Back     alignment and domain information
>KOG4367 consensus Predicted Zn-finger protein [Function unknown] Back     alignment and domain information
>KOG1477 consensus SPRY domain-containing proteins [General function prediction only] Back     alignment and domain information
>KOG2243 consensus Ca2+ release channel (ryanodine receptor) [Signal transduction mechanisms] Back     alignment and domain information
>KOG1477 consensus SPRY domain-containing proteins [General function prediction only] Back     alignment and domain information
>KOG2242 consensus Scaffold/matrix specific factor hnRNP-U/SAF-A, contains SPRY domain [RNA processing and modification] Back     alignment and domain information
>PF07177 Neuralized: Neuralized; InterPro: IPR006573 NEUZ is a domain of unknown function found in neuralized proteins, i Back     alignment and domain information
>smart00588 NEUZ domain in neuralized proteins Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query552
3toj_A213 Structure Of The Spry Domain Of Human Ash2l Length 3e-34
>pdb|3TOJ|A Chain A, Structure Of The Spry Domain Of Human Ash2l Length = 213 Back     alignment and structure 
Iteration: 1

 Score =  143 bits (360), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 89/231 (38%), Positives = 120/231 (51%), Gaps = 42/231 (18%)
Query: 315 KICLSKVYKAEKVELSDDRLTAGSTKGYRMVRATRGVVEGAWYYEIKVVALGETGHTRLG 374
           ++ L+   +A ++++SDDRLT    KGY MVRA+ GV +GAWY+EI V  +      RLG
Sbjct: 12  RVLLALHDRAPQLKISDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLG 71
Query: 375 WSTEKGDLQAPVGYDGNSFGYRDIDGSKVHKALRXXXXXXXXXXXDVIGFYINLPEGGQY 434
           WS   G+LQAP+GYD  S+ +R   G+K H+++            DV+GFYINLP     
Sbjct: 72  WSQPLGNLQAPLGYDKFSYSWRSKKGTKFHQSI-GKHYSSGYGQGDVLGFYINLP----- 125
Query: 435 APKPPHFVWYKGQRYVCAPDSKEDPPKVVPGSEISFFKNGVCQGVAFKDLYGGRYYPAAS 494
                                 ED       SEI F+KNGV QGVA+KD++ G Y+PA S
Sbjct: 126 ----------------------EDTISGRGSSEIIFYKNGVNQGVAYKDIFEGVYFPAIS 163
Query: 495 MYSLPNQPNCVVKFNFGPDFECFPDDFGERP---------VPSPMAEVPYH 536
           +Y      +C V  NFGP F+  P D   RP         V   +A+V YH
Sbjct: 164 LYK-----SCTVSINFGPCFKYPPKDLTYRPMSDMGWGAVVEHTLADVLYH 209

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query552
3toj_A213 SET1/ASH2 histone methyltransferase complex subun; 3e-61
2yyo_A171 SPRY domain-containing protein 3; NPPSFA, national 4e-38
3emw_A217 SPRY domain-containing SOCS box protein 2; apoptos 3e-28
2jk9_A212 SPRY domain-containing SOCS box protein 1; transcr 1e-26
2afj_A226 Gene rich cluster, C9 gene; beta sandwich, gene re 3e-25
3gdb_A 937 Endo-D, putative uncharacterized protein SPR0440; 1e-05
3gdb_A 937 Endo-D, putative uncharacterized protein SPR0440; 1e-05
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-05
>3toj_A SET1/ASH2 histone methyltransferase complex subun; transcription, SPRY domain, prote binding, histone methylation, RBBP5, DPY-30, nuclear; 2.07A {Homo sapiens} Length = 213 Back     alignment and structure
 Score =  200 bits (509), Expect = 3e-61
 Identities = 93/231 (40%), Positives = 126/231 (54%), Gaps = 42/231 (18%)

Query: 315 KICLSKVYKAEKVELSDDRLTAGSTKGYRMVRATRGVVEGAWYYEIKVVALGETGHTRLG 374
           ++ L+   +A ++++SDDRLT    KGY MVRA+ GV +GAWY+EI V  +      RLG
Sbjct: 12  RVLLALHDRAPQLKISDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLG 71

Query: 375 WSTEKGDLQAPVGYDGNSFGYRDIDGSKVHKALREKYGEEGYKEGDVIGFYINLPEGGQY 434
           WS   G+LQAP+GYD  S+ +R   G+K H+++ + Y   GY +GDV+GFYINLP     
Sbjct: 72  WSQPLGNLQAPLGYDKFSYSWRSKKGTKFHQSIGKHYS-SGYGQGDVLGFYINLP----- 125

Query: 435 APKPPHFVWYKGQRYVCAPDSKEDPPKVVPGSEISFFKNGVCQGVAFKDLYGGRYYPAAS 494
                                 ED       SEI F+KNGV QGVA+KD++ G Y+PA S
Sbjct: 126 ----------------------EDTISGRGSSEIIFYKNGVNQGVAYKDIFEGVYFPAIS 163

Query: 495 MYSLPNQPNCVVKFNFGPDFECFPDDFGERP---------VPSPMAEVPYH 536
           +Y      +C V  NFGP F+  P D   RP         V   +A+V YH
Sbjct: 164 LYK-----SCTVSINFGPCFKYPPKDLTYRPMSDMGWGAVVEHTLADVLYH 209
>2yyo_A SPRY domain-containing protein 3; NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} Length = 171 Back     alignment and structure
>3emw_A SPRY domain-containing SOCS box protein 2; apoptosis nucleus, apoptosis, UBL conjugation pathwayc, CL transcription regulation, transcription, phosphoprotein; 1.80A {Homo sapiens} PDB: 3ek9_A Length = 217 Back     alignment and structure
>2jk9_A SPRY domain-containing SOCS box protein 1; transcription regulation, transcription; 1.79A {Homo sapiens} PDB: 3f2o_A 2fnj_A 2v24_A 2ihs_A Length = 212 Back     alignment and structure
>2afj_A Gene rich cluster, C9 gene; beta sandwich, gene regulation; NMR {Mus musculus} SCOP: b.29.1.22 Length = 226 Back     alignment and structure
>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937 Back     alignment and structure
>3gdb_A Endo-D, putative uncharacterized protein SPR0440; alpha-beta-barrels, cell WALL, peptidoglycan-anchor, secreted, hydrolase; HET: PGE; 1.87A {Streptococcus pneumoniae} PDB: 2xqx_A Length = 937 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query552
3toj_A213 SET1/ASH2 histone methyltransferase complex subun; 100.0
2yyo_A171 SPRY domain-containing protein 3; NPPSFA, national 100.0
3emw_A217 SPRY domain-containing SOCS box protein 2; apoptos 99.95
2jk9_A212 SPRY domain-containing SOCS box protein 1; transcr 99.95
2afj_A226 Gene rich cluster, C9 gene; beta sandwich, gene re 99.92
2fbe_A201 Predicted: similar to RET finger protein-like 1; d 99.29
2vok_A188 52 kDa RO protein; polymorphism, immune system, me 99.28
2wl1_A191 Pyrin, marenostrin; amyloidosis, polymorphism, cyt 99.27
3uv9_A186 TRIM5alpha, tripartite motif-containing protein 5; 99.22
3kb5_A193 Tripartite motif-containing protein 72; B30.2, gus 99.01
4b3n_A602 Maltose-binding periplasmic protein, tripartite mo 98.83
2e63_A170 KIAA1787 protein; structure genomics, neuralized d 98.82
2yue_A168 Protein neuralized; structure genomics, NEUZ(NHR) 98.28
>3toj_A SET1/ASH2 histone methyltransferase complex subun; transcription, SPRY domain, prote binding, histone methylation, RBBP5, DPY-30, nuclear; 2.07A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=8.8e-44  Score=340.75  Aligned_cols=180  Identities=48%  Similarity=0.899  Sum_probs=163.9

Q ss_pred             eEEeCCCccCCcEEEcCCCcEEEeCCCcceEEeccceecCeEEEEEEEEEeCCCCcEEEEEecCCCCCCCCCCCCCCeEE
Q 035919          315 KICLSKVYKAEKVELSDDRLTAGSTKGYRMVRATRGVVEGAWYYEIKVVALGETGHTRLGWSTEKGDLQAPVGYDGNSFG  394 (552)
Q Consensus       315 ~V~LS~~~ks~~I~LS~DgLTVtg~kGyrsVRAT~GVssGkwYFEVkIvs~G~sG~IrIGwATr~a~LqapVG~D~~SyG  394 (552)
                      .|+||+.++++.|.||+|+|+|++.++|++||+++++.+|+|||||+|...+..++++||||++.+++++++|+|.+|||
T Consensus        12 ~v~ld~~d~~~~l~ls~d~l~v~~~~~~~~vra~~~v~~G~~YfEV~v~~~~~~~~~~iG~a~~~~~~~~~~G~d~~S~g   91 (213)
T 3toj_A           12 RVLLALHDRAPQLKISDDRLTVVGEKGYSMVRASHGVRKGAWYFEITVDEMPPDTAARLGWSQPLGNLQAPLGYDKFSYS   91 (213)
T ss_dssp             CCCEEEEEECTTSEECTTSSEEECCSSCEEEEESCCBSSEEEEEEEEEEECCTTCEEEEEEECTTSCTTSCTTSSTTEEE
T ss_pred             eEEechhhCCCCEEEcCCCcEEEeCCceeEEEeCCCccCCeEEEEEEEeecCCCceEEEEeccCCcccccCCCCCCCcEE
Confidence            58999999999999999999999999999999999999999999999999777789999999999999999999999999


Q ss_pred             EEeCCCcEEeCCcccccCCCCCCCCCEEEEEEECCCCCCCCCCCCCccccccccceecCCCCCCCCCCCCCcEEEEEECC
Q 035919          395 YRDIDGSKVHKALREKYGEEGYKEGDVIGFYINLPEGGQYAPKPPHFVWYKGQRYVCAPDSKEDPPKVVPGSEISFFKNG  474 (552)
Q Consensus       395 Yrg~DGkk~Hng~~e~YG~~~f~eGDVIGCgIDL~~Gt~~~pk~~~Li~~kg~l~l~~~~~~e~p~~~~~GSeI~FTKNG  474 (552)
                      |++.+|++||++....||. +|+.||||||+||++.++.                           ....+++|+||+||
T Consensus        92 y~~~~G~~~h~~~~~~yg~-~~~~GDvIGc~ld~~~~~~---------------------------~~~~~g~i~Ft~NG  143 (213)
T 3toj_A           92 WRSKKGTKFHQSIGKHYSS-GYGQGDVLGFYINLPEDTI---------------------------SGRGSSEIIFYKNG  143 (213)
T ss_dssp             EETTTTCEEETTEEECCSC-CCCTTCEEEEEEEECCC--------------------------------CCCEEEEEETT
T ss_pred             EECCCCeEEeCCcCcccCC-CCCCCCEEEEEEEcCCCcc---------------------------ccCCccEEEEEeCC
Confidence            9999999999988889997 9999999999999998531                           12334689999999


Q ss_pred             eEeeeceeecCCCcEEEEEEEccCCCCCCcEEEEECCCCCccCCCCCCCCCCC
Q 035919          475 VCQGVAFKDLYGGRYYPAASMYSLPNQPNCVVKFNFGPDFECFPDDFGERPVP  527 (552)
Q Consensus       475 k~LGvAFkdI~gG~LYPAVSL~tlp~~~g~~VrfNFGp~F~F~Ppdf~~rP~p  527 (552)
                      +.||+||++|+.+.|||+||++.     ++.|++|||++|+|+|++++++|+-
T Consensus       144 ~~lg~aF~~~~~~~lyPavsl~~-----~~~v~~NFG~~F~~~p~~~~~~~~~  191 (213)
T 3toj_A          144 VNQGVAYKDIFEGVYFPAISLYK-----SCTVSINFGPCFKYPPKDLTYRPMS  191 (213)
T ss_dssp             EEEEEEEESCCSSCBEEEEEEES-----SCEEEEECSSSCSSCCSSCCCEEGG
T ss_pred             eeeeeeEEcCCCCcEEEEEEcCC-----CCEEEEECCCCCccCCCCCceEcHH
Confidence            99999999998889999999986     8999999999999999987765543
>2yyo_A SPRY domain-containing protein 3; NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} Back     alignment and structure
>3emw_A SPRY domain-containing SOCS box protein 2; apoptosis nucleus, apoptosis, UBL conjugation pathwayc, CL transcription regulation, transcription, phosphoprotein; 1.80A {Homo sapiens} PDB: 3ek9_A Back     alignment and structure
>2jk9_A SPRY domain-containing SOCS box protein 1; transcription regulation, transcription; 1.79A {Homo sapiens} PDB: 3f2o_A 2fnj_A 2v24_A 2ihs_A Back     alignment and structure
>2afj_A Gene rich cluster, C9 gene; beta sandwich, gene regulation; NMR {Mus musculus} SCOP: b.29.1.22 Back     alignment and structure
>2fbe_A Predicted: similar to RET finger protein-like 1; dimer, jellyroll beta-sandwich fold, unknown function; 2.52A {Homo sapiens} SCOP: b.29.1.22 Back     alignment and structure
>2vok_A 52 kDa RO protein; polymorphism, immune system, metal-binding, tripartite motif (TRIM) protein, SPRY systemic lupus erythematosus, zinc, B30.2; 1.30A {Mus musculus} PDB: 2vol_B* 2iwg_B* Back     alignment and structure
>2wl1_A Pyrin, marenostrin; amyloidosis, polymorphism, cytoskeleton, actin-binding inflammatory response, metal-binding, signaling protein; 1.35A {Homo sapiens} Back     alignment and structure
>3uv9_A TRIM5alpha, tripartite motif-containing protein 5; domain SWAP, antiretroviral, HIV capsid, ligase; 1.55A {Macaca mulatta} Back     alignment and structure
>3kb5_A Tripartite motif-containing protein 72; B30.2, gustavus, SPRY, TRIM21, TRIM72, PRY, high resolution, Mg53; 1.50A {Homo sapiens} Back     alignment and structure
>4b3n_A Maltose-binding periplasmic protein, tripartite motif-containing protein 5; sugar binding protein-ligase complex; HET: MAL MES; 3.30A {Escherichia coli} PDB: 2lm3_A Back     alignment and structure
>2e63_A KIAA1787 protein; structure genomics, neuralized domain, structural genomics, NPPSFA; NMR {Homo sapiens} Back     alignment and structure
>2yue_A Protein neuralized; structure genomics, NEUZ(NHR) domain, structural genomics, NPPSFA; NMR {Drosophila melanogaster} Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 552
d2fnja1217 b.29.1.22 (A:35-251) LD34464p {Fruit fly (Drosophi 4e-23
d2afja1213 b.29.1.22 (A:12-224) SPRY domain-containing SOCS b 1e-22
>d2fnja1 b.29.1.22 (A:35-251) LD34464p {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 217 Back     information, alignment and structure

class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: SPRY domain
domain: LD34464p
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 95.6 bits (237), Expect = 4e-23
 Identities = 33/250 (13%), Positives = 70/250 (28%), Gaps = 60/250 (24%)

Query: 292 PEDTVLITPVPRFPDKGDDNPEMKICLSKVYKAEKVELSDDRLTA----GSTKGYRMVRA 347
           P    ++  +P        + ++K   +   ++  + + +D           +    +R 
Sbjct: 4   PARIDILLDMP----PASRDLQLKHSWNSEDRSLNIFVKEDDKLTFHRHPVAQSTDCIRG 59

Query: 348 TRGVVEGAWYYEIKVVALGETGHTRLGWSTEKGDLQAP-----VGYDGNSFGYRDIDGSK 402
             G+ +G   +EI         H  +G  T    L +      VG    S+G+       
Sbjct: 60  KVGLTKGLHIWEIYWPTRQRGTHAVVGVCTADAPLHSVGYQSLVGSTEQSWGWDLGRNKL 119

Query: 403 VHKALREKY--------GEEGYKEGDVIGFYINLPEGGQYAPKPPHFVWYKGQRYVCAPD 454
            H +              +E +   D     +++ E                        
Sbjct: 120 YHDSKNCAGVTYPAILKNDEAFLVPDKFLVALDMDE------------------------ 155

Query: 455 SKEDPPKVVPGSEISFFKNGVCQGVAFKDLYGGRYYPAASMYSLPNQPNCVVKFNFGPDF 514
                        +SF  +    G+AF+ L G + YP  S        +C +   +    
Sbjct: 156 -----------GTLSFIVDQQYLGIAFRGLRGKKLYPIVSAVW----GHCEITMRYIGGL 200

Query: 515 ECFPDDFGER 524
           +  P    + 
Sbjct: 201 DPEPLPLMDL 210
>d2afja1 b.29.1.22 (A:12-224) SPRY domain-containing SOCS box protein 2 {Mouse (Mus musculus) [TaxId: 10090]} Length = 213 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query552
d2fnja1217 LD34464p {Fruit fly (Drosophila melanogaster) [Tax 99.97
d2afja1213 SPRY domain-containing SOCS box protein 2 {Mouse ( 99.97
d2fbea1188 Similar to Ret finger protein-like 1 {Human (Homo 99.35
d2iwgb1179 52 kDa Ro protein {Human (Homo sapiens) [TaxId: 96 99.28
>d2fnja1 b.29.1.22 (A:35-251) LD34464p {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Back     information, alignment and structure
class: All beta proteins
fold: Concanavalin A-like lectins/glucanases
superfamily: Concanavalin A-like lectins/glucanases
family: SPRY domain
domain: LD34464p
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.97  E-value=5.5e-32  Score=255.88  Aligned_cols=165  Identities=20%  Similarity=0.297  Sum_probs=139.9

Q ss_pred             ceEEeCCCccCCcEEEcCCCcEEE-e---CCCcceEEeccceecCeEEEEEEEEEeCCCCcEEEEEecCCCCCC-----C
Q 035919          314 MKICLSKVYKAEKVELSDDRLTAG-S---TKGYRMVRATRGVVEGAWYYEIKVVALGETGHTRLGWSTEKGDLQ-----A  384 (552)
Q Consensus       314 ~~V~LS~~~ks~~I~LS~DgLTVt-g---~kGyrsVRAT~GVssGkwYFEVkIvs~G~sG~IrIGwATr~a~Lq-----a  384 (552)
                      +..+||+.+++.+|.|++|++.+. .   ..++.+||+++++++|+|||||+|.......+++|||++..++++     .
T Consensus        22 ~~~~wn~~~~~~~~~ls~~~~~~~~~~~~~~~~~~vrgt~g~ssGk~YWEV~v~~~~~~~~~~IGV~~~~~~~~~~~~~~  101 (217)
T d2fnja1          22 LKHSWNSEDRSLNIFVKEDDKLTFHRHPVAQSTDCIRGKVGLTKGLHIWEIYWPTRQRGTHAVVGVCTADAPLHSVGYQS  101 (217)
T ss_dssp             HHTSEEEEEECTTEEEETTEEEEEEECCCTTEEEEEEESCCBCSSEEEEEEECCGGGCTTCCEEEEECTTSCSEEESSCC
T ss_pred             ccccCChhcCCCCEEEeCCCceEEEeCCccccCCeEEEcccccCCcEEEEEEEecCCCCCeeEEEEEecccCcccCCccc
Confidence            346899999999999999986654 2   246788999999999999999999875445689999999988774     5


Q ss_pred             CCCCCCCeEEEEeCCCcEEeCCcc---------cccCCCCCCCCCEEEEEEECCCCCCCCCCCCCccccccccceecCCC
Q 035919          385 PVGYDGNSFGYRDIDGSKVHKALR---------EKYGEEGYKEGDVIGFYINLPEGGQYAPKPPHFVWYKGQRYVCAPDS  455 (552)
Q Consensus       385 pVG~D~~SyGYrg~DGkk~Hng~~---------e~YG~~~f~eGDVIGCgIDL~~Gt~~~pk~~~Li~~kg~l~l~~~~~  455 (552)
                      .+|++.+||+|+..+|.++|++..         ..||. .|..||||||+|||++|                        
T Consensus       102 ~~G~~~~s~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~-~~~~gDvIGV~LD~d~g------------------------  156 (217)
T d2fnja1         102 LVGSTEQSWGWDLGRNKLYHDSKNCAGVTYPAILKNDE-AFLVPDKFLVALDMDEG------------------------  156 (217)
T ss_dssp             CTTSSTTEEEEETTTTEEEESTTTSCCEESSTTCCTTC-CCCCCSEEEEEEETTTT------------------------
T ss_pred             cccCCCCcceEecCCCEEEecCCCccccccCcccccCC-ccCCCCEEEEEEeCCCC------------------------
Confidence            799999999999999999997632         24676 89999999999999998                        


Q ss_pred             CCCCCCCCCCcEEEEEECCeEeeeceeecCCCcEEEEEEEccCCCCCCcEEEEECCCCCccCC
Q 035919          456 KEDPPKVVPGSEISFFKNGVCQGVAFKDLYGGRYYPAASMYSLPNQPNCVVKFNFGPDFECFP  518 (552)
Q Consensus       456 ~e~p~~~~~GSeI~FTKNGk~LGvAFkdI~gG~LYPAVSL~tlp~~~g~~VrfNFGp~F~F~P  518 (552)
                                 +|+|+|||++||+||++|++..|||+||...    .++.|+++|...+...|
T Consensus       157 -----------tLsF~kNG~~lGvAf~~l~~~~lyP~vs~~~----~~~~v~~~~~~~~~~~~  204 (217)
T d2fnja1         157 -----------TLSFIVDQQYLGIAFRGLRGKKLYPIVSAVW----GHCEITMRYIGGLDPEP  204 (217)
T ss_dssp             -----------EEEEEETTEEEEEEECCCTTCCBEEEEEECC----TTCEEEEEEEEEECSSC
T ss_pred             -----------EEEEEECCEEeeEEEeCCCCCeEEEEEEecc----CCcEEEEEEcCCcCCCC
Confidence                       7999999999999999999889999999865    58999999865444433
>d2afja1 b.29.1.22 (A:12-224) SPRY domain-containing SOCS box protein 2 {Mouse (Mus musculus) [TaxId: 10090]} Back     information, alignment and structure
>d2fbea1 b.29.1.22 (A:1-188) Similar to Ret finger protein-like 1 {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure
>d2iwgb1 b.29.1.22 (B:4-182) 52 kDa Ro protein {Human (Homo sapiens) [TaxId: 9606]} Back     information, alignment and structure