Citrus Sinensis ID: 035928

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------12
Protein Sequence
MGTGYHHHLNFHLHLPHIHFHHHGKKDEMRNIPKGCLAILVGQEGEEQQKFVIPVIYINHPLFMQLLKEAEEEYGFDQKGPITLPCHVEEFRTVQGMIDKDRSLLHHHHHHHVWCFRA
Secondary Structure (PSIPRED)
ccccccccEEEEEEccccccccccccccccccccccEEEEEccccccEEEEEEEEccccHHHHHHHHHHHHHHHcccccccEEEEccHHHHHHHHHHHHccccccccccccEEEEEEc
Secondary Structure Prediction (SSPRO)
cccHHHHHHHHHHHHHHHHHHHcccccccccccccEEEEEEcccccccEEEEEEEEHcccHHHHHHHHHHHHHHcccccccEEccccHHHHHHHHHHHccccccccccccccccEEcc
Coil and Loop (DISEMBL)
mgtgyhhhlnfhlhlphihfhhhgkkdemrnipkGCLAILVGqegeeqqkfvipviyINHPLFMQLLKEAEEeygfdqkgpitlpchveEFRTVQgmidkdrsllhhhhhhhvwcfra
Flexible Loop (DISEMBL)
MGTGYHHHLNFHLHLPHIHFHHHGKKDEMRNIPKGCLAILVGQEGEEQQKFVIPVIYINHPLFMQLLKEAEEEYGFDQKGPITLPCHVEEFRTVQGMIDKDRSLLHHHHHHHVWCFRA
Low Complexity Region (SEG)
MGTGYhhhlnfhlhlphihfhhhGKKDEMRNIPKGCLAILVGQEGEEQQKFVIPVIYINHPLFMQLLKEAEEEYGFDQKGPITLPCHVEEFRTVQGMIDKDRSLLhhhhhhhVWCFRA
Disordered region (IsUnstruct)
****YHHHLNFHLHLPHIHFHHHGKKDEMRNIPKGCLAILVGQEGEEQQKFVIPVIYINHPLFMQLLKEAEEEYGFDQKGPITLPCHVEEFRTVQG**********************
Disordered Region (DISOPRED)
***********************************CLAILVGQEGEEQQKFVIPVIYINHPLFMQLLKEAEEEYGFDQKGPITLPCHVEEFRTVQG***************HVWCFRA
Disordered Region (DISEMBL)
MGTGYHHHLNFHLHLPHI*********EMRNIPKGCLAILVGQEGEEQQKFVIPVIYINHPLFMQLLKEAEEEYGFDQKGPITLPCHVEEFRTVQGMIDKDRSLLHHHHHHHVWCFRA
Disordered Region (DISPRO)
****YHHHLNFHLHLPHIHFHHH***DEMRNIPKGCLAILVGQEGEEQQKFVIPVIYINHPLFMQLLKEAEEEYGFDQKGPITLPCHVEEFRTVQGMIDKDRSL*********WCFRA
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MGTGYHHHLNFHLHLPHIHFHHHGKKDEMRNIPKGCLAILVGQEGEEQQKFVIPVIYINHPLFMQLLKEAEEEYGFDQKGPITLPCHVEEFRTVQGMIDKDRSLLHHHHHHHVWCFRA
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	118	2.2.26 [Sep-21-2011]
P33079	93	Auxin-induced protein 10A	no	no	0.652	0.827	0.382	3e-10
P33081	82	Auxin-induced protein 15A	no	no	0.669	0.963	0.386	4e-10
P33080	92	Auxin-induced protein X10	no	no	0.508	0.652	0.468	6e-10
P33082	82	Auxin-induced protein X15	no	no	0.627	0.902	0.421	9e-10
P32295	92	Indole-3-acetic acid-indu	N/A	no	0.542	0.695	0.441	4e-09
P33083	90	Auxin-induced protein 6B	no	no	0.711	0.933	0.351	2e-08

>sp|P33079|A10A5_SOYBN Auxin-induced protein 10A5 OS=Glycine max PE=2 SV=1

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 31/81 (38%), Positives = 47/81 (58%), Gaps = 4/81 (4%)

Query: 17 HIHFHHHGKKDEMRNIPKGCLAILVGQEGEEQQKFVIPVIYINHPLFMQLLKEAEEEYGF 76
             F+      +  ++PKG  A+ VG   ++ ++F IPV Y+N P F +LL +AEEE+G+
Sbjct: 11 RTSFYTTQAASKRVDVPKGYAAVYVG---DKMRRFTIPVSYLNEPSFQELLSQAEEEFGY 67

Query: 77 D-QKGPITLPCHVEEFRTVQG 96
          D   G +T+PC  EEF  V  
Sbjct: 68 DHPMGGLTIPCKEEEFLNVTA 88

Glycine max (taxid: 3847)

>sp|P33081|AX15A_SOYBN Auxin-induced protein 15A OS=Glycine max PE=2 SV=1

 Score = 63.2 bits (152), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 34/88 (38%), Positives = 51/88 (57%), Gaps = 9/88 (10%)

Query: 13 LHLPHIHFHHHGKKDEMRNIPKGCLAILVGQEGEEQQKFVIPVIYINHPLFMQLLKEAEE 72
            LP I      K  +  + PKG LA+ VG   E+ ++FVIPV Y+N P F  LL +AEE
Sbjct: 3  FRLPGIR-----KASKAADAPKGYLAVYVG---EKLKRFVIPVSYLNQPSFQDLLSQAEE 54

Query: 73 EYGFD-QKGPITLPCHVEEFRTVQGMID 99
          E+G+D   G +T+PC  + F+ +   ++
Sbjct: 55 EFGYDHPMGGLTIPCSEDVFQCITSCLN 82

Glycine max (taxid: 3847)

>sp|P33080|AX10A_SOYBN Auxin-induced protein X10A OS=Glycine max PE=2 SV=1

 Score = 62.8 bits (151), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 30/64 (46%), Positives = 44/64 (68%), Gaps = 4/64 (6%)

Query: 32 IPKGCLAILVGQEGEEQQKFVIPVIYINHPLFMQLLKEAEEEYGFD-QKGPITLPCHVEE 90
          +PKG L + VG   ++ ++F+IPV Y+N P F  LL +AEEE+G+D   G +T+PC  +E
Sbjct: 25 VPKGYLVVYVG---DKMRRFLIPVSYLNQPSFQDLLNQAEEEFGYDHPMGGLTIPCKEDE 81

Query: 91 FRTV 94
          F TV
Sbjct: 82 FLTV 85

Glycine max (taxid: 3847)

>sp|P33082|AXX15_SOYBN Auxin-induced protein X15 OS=Glycine max PE=2 SV=1

 Score = 62.4 bits (150), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 35/83 (42%), Positives = 48/83 (57%), Gaps = 9/83 (10%)

Query: 13 LHLPHIHFHHHGKKDEMRNIPKGCLAILVGQEGEEQQKFVIPVIYINHPLFMQLLKEAEE 72
            LP I      K     + PKG LA+ VG   E+ ++FVIPV Y+N P F  LL +AEE
Sbjct: 3  FRLPGIR-----KASNAVDAPKGYLAVYVG---EKMKRFVIPVSYMNQPSFQDLLTQAEE 54

Query: 73 EYGFD-QKGPITLPCHVEEFRTV 94
          E+G+D   G +T+PC  E F+ +
Sbjct: 55 EFGYDHPMGGLTIPCSEEVFQRI 77

Glycine max (taxid: 3847)

>sp|P32295|ARG7_VIGRR Indole-3-acetic acid-induced protein ARG7 OS=Vigna radiata var. radiata GN=ARG7 PE=2 SV=1

 Score = 60.1 bits (144), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 30/68 (44%), Positives = 45/68 (66%), Gaps = 4/68 (5%)

Query: 26 KDEMRNIPKGCLAILVGQEGEEQQKFVIPVIYINHPLFMQLLKEAEEEYGFD-QKGPITL 84
            ++ + PKG LA+ VG   E  ++FVIPV ++N PLF  LL +AEEE+G+D   G +T+
Sbjct: 19 SSKVLDAPKGYLAVYVG---ENMKRFVIPVSHLNQPLFQDLLSQAEEEFGYDHPMGGLTI 75

Query: 85 PCHVEEFR 92
          PC  + F+
Sbjct: 76 PCSEDLFQ 83

Vigna radiata var. radiata (taxid: 3916)

>sp|P33083|AX6B_SOYBN Auxin-induced protein 6B OS=Glycine max PE=2 SV=1

 Score = 58.2 bits (139), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 32/91 (35%), Positives = 51/91 (56%), Gaps = 7/91 (7%)

Query: 13 LHLPHIH---FHHHGKKDEMRNIPKGCLAILVGQEGEEQQKFVIPVIYINHPLFMQLLKE 69
            LP I    F  +    +  ++ KG LA+ VG   E+ ++FVIPV Y+N P F  LL +
Sbjct: 3  FRLPGIRKASFSANQASSKAVDVEKGYLAVYVG---EKMRRFVIPVSYLNKPSFQDLLSQ 59

Query: 70 AEEEYGF-DQKGPITLPCHVEEFRTVQGMID 99
          AEEE+G+    G +T+PC  + F+ +   ++
Sbjct: 60 AEEEFGYHHPNGGLTIPCSEDVFQHITSFLN 90

Glycine max (taxid: 3847)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	118
357464091	135	Auxin-induced protein 10A5 [Medicago tru	0.906	0.792	0.736	9e-41
388498934	114	unknown [Medicago truncatula]	0.906	0.938	0.736	3e-40
224135047	118	SAUR family protein [Populus trichocarpa	0.983	0.983	0.716	1e-37
302143962	116	unnamed protein product [Vitis vinifera]	0.855	0.870	0.733	4e-36
225455256	121	PREDICTED: indole-3-acetic acid-induced	0.830	0.809	0.735	7e-35
351723859	136	uncharacterized protein LOC100526867 [Gl	0.788	0.683	0.776	8e-35
356509188	131	PREDICTED: auxin-induced protein X15-lik	0.864	0.778	0.740	3e-34
225453575	115	PREDICTED: auxin-induced protein 10A5 [V	0.830	0.852	0.721	2e-33
224120972	135	SAUR family protein [Populus trichocarpa	0.855	0.748	0.675	3e-33
224128011	110	SAUR family protein [Populus trichocarpa	0.932	1.0	0.669	6e-33

>gi|357464091|ref|XP_003602327.1| Auxin-induced protein 10A5 [Medicago truncatula] gi|355491375|gb|AES72578.1| Auxin-induced protein 10A5 [Medicago truncatula]

 Score =  170 bits (431), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 84/114 (73%), Positives = 100/114 (87%), Gaps = 7/114 (6%)

Query: 5   YHHHLNFHLHLPHIHFHHHGKKDEMRNIPKGCLAILVGQEGEEQQKFVIPVIYINHPLFM 64
           ++HHL+FHLH+PH++FHHH +K+  ++IPKGCLA++VGQ GEEQQKFVIPVIYINHPLFM
Sbjct: 29  HNHHLSFHLHIPHLNFHHHHEKN--KDIPKGCLAVMVGQ-GEEQQKFVIPVIYINHPLFM 85

Query: 65  QLLKEAEEEYGFDQKGPITLPCHVEEFRTVQGMIDKDRSLLHHHHHHHVWCFRA 118
           QLLKEAEEEYGFD KGPI +PC VEEFRTVQGMID ++S    HHHHH WCF+ 
Sbjct: 86  QLLKEAEEEYGFDHKGPIIIPCQVEEFRTVQGMIDMEKS----HHHHHAWCFKV 135

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388498934|gb|AFK37533.1| unknown [Medicago truncatula]

 Score =  168 bits (426), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 84/114 (73%), Positives = 100/114 (87%), Gaps = 7/114 (6%)

Query: 5   YHHHLNFHLHLPHIHFHHHGKKDEMRNIPKGCLAILVGQEGEEQQKFVIPVIYINHPLFM 64
           ++HHL+FHLH+PH++FHHH +K+  ++IPKGCLA++VGQ GEEQQKFVIPVIYINHPLFM
Sbjct: 8   HNHHLSFHLHIPHLNFHHHHEKN--KDIPKGCLAVMVGQ-GEEQQKFVIPVIYINHPLFM 64

Query: 65  QLLKEAEEEYGFDQKGPITLPCHVEEFRTVQGMIDKDRSLLHHHHHHHVWCFRA 118
           QLLKEAEEEYGFD KGPI +PC VEEFRTVQGMID ++S    HHHHH WCF+ 
Sbjct: 65  QLLKEAEEEYGFDHKGPIIIPCQVEEFRTVQGMIDMEKS----HHHHHAWCFKV 114

Source: Medicago truncatula

Species: Medicago truncatula

Genus: Medicago

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224135047|ref|XP_002321970.1| SAUR family protein [Populus trichocarpa] gi|222868966|gb|EEF06097.1| SAUR family protein [Populus trichocarpa]

 Score =  160 bits (405), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 86/120 (71%), Positives = 104/120 (86%), Gaps = 4/120 (3%)

Query: 1   MGTGYHHHLNFHLHLP-HIHFHHHGKKDEMRNIPKGCLAILVGQEGEEQQKFVIPVIYIN 59
           MG+G   HLNFH+HLP + H HHH +K E+++IPKGCLA++VGQ GEEQQ+FVIPVIYIN
Sbjct: 1   MGSGDKLHLNFHIHLPKNHHHHHHHRKKELKDIPKGCLAVMVGQ-GEEQQRFVIPVIYIN 59

Query: 60  HPLFMQLLKEAEEEYGFDQKGPITLPCHVEEFRT-VQGMIDKDRSLLHHHHHHHVWCFRA 118
           HPLFM LLKEAEEE+GFDQ+GPIT+PCHVEEFR  VQGMI+++ S  +HHHH+HVWCFR 
Sbjct: 60  HPLFMHLLKEAEEEFGFDQQGPITIPCHVEEFRNIVQGMIEEENSQ-YHHHHYHVWCFRV 118

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|302143962|emb|CBI23067.3| unnamed protein product [Vitis vinifera]

 Score =  155 bits (391), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 77/105 (73%), Positives = 90/105 (85%), Gaps = 4/105 (3%)

Query: 1   MGTGYHHHLNFHLHLPHIHFHHHGKKDEMRNIPKGCLAILVGQEGEEQQKFVIPVIYINH 60
           MG+G  + LNFH+H   +H  +   K EMR+IPKGCLA+LVGQ GEEQQ+FVIPVIYINH
Sbjct: 1   MGSGEKNFLNFHMH---VHHGNGNNKKEMRDIPKGCLAVLVGQ-GEEQQRFVIPVIYINH 56

Query: 61  PLFMQLLKEAEEEYGFDQKGPITLPCHVEEFRTVQGMIDKDRSLL 105
           PLFM+LLKEAEEEYGF+QKGPIT+PCHVEEFR VQGMIDK++ LL
Sbjct: 57  PLFMELLKEAEEEYGFEQKGPITIPCHVEEFRYVQGMIDKEKPLL 101

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225455256|ref|XP_002273092.1| PREDICTED: indole-3-acetic acid-induced protein ARG7 [Vitis vinifera] gi|147833400|emb|CAN64099.1| hypothetical protein VITISV_014898 [Vitis vinifera]

 Score =  150 bits (380), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 75/102 (73%), Positives = 88/102 (86%), Gaps = 4/102 (3%)

Query: 1   MGTGYHHHLNFHLHLPHIHFHHHGKKDEMRNIPKGCLAILVGQEGEEQQKFVIPVIYINH 60
           MG+G  + LNFH+H   +H  +   K EMR+IPKGCLA+LVGQ GEEQQ+FVIPVIYINH
Sbjct: 1   MGSGEKNFLNFHMH---VHHGNGNNKKEMRDIPKGCLAVLVGQ-GEEQQRFVIPVIYINH 56

Query: 61  PLFMQLLKEAEEEYGFDQKGPITLPCHVEEFRTVQGMIDKDR 102
           PLFM+LLKEAEEEYGF+QKGPIT+PCHVEEFR VQGMIDK++
Sbjct: 57  PLFMELLKEAEEEYGFEQKGPITIPCHVEEFRYVQGMIDKEK 98

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351723859|ref|NP_001235246.1| uncharacterized protein LOC100526867 [Glycine max] gi|255631024|gb|ACU15876.1| unknown [Glycine max]

 Score =  150 bits (380), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 73/94 (77%), Positives = 87/94 (92%), Gaps = 1/94 (1%)

Query: 25  KKDEMRNIPKGCLAILVGQEGEEQQKFVIPVIYINHPLFMQLLKEAEEEYGFDQKGPITL 84
           KK+++++IPKGCLAILVGQ GEEQQ+FV+PV+Y+NHPLFMQLLKEAEEEYGFDQKGPIT+
Sbjct: 44  KKEDLKDIPKGCLAILVGQ-GEEQQRFVVPVMYMNHPLFMQLLKEAEEEYGFDQKGPITI 102

Query: 85  PCHVEEFRTVQGMIDKDRSLLHHHHHHHVWCFRA 118
           PCHVE FRTVQG+ID+D+SL H  HHHH WCF+ 
Sbjct: 103 PCHVEHFRTVQGLIDRDKSLHHGQHHHHAWCFKV 136

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356509188|ref|XP_003523333.1| PREDICTED: auxin-induced protein X15-like [Glycine max]

 Score =  148 bits (374), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 80/108 (74%), Positives = 97/108 (89%), Gaps = 6/108 (5%)

Query: 15  LPHI-HFHHHG---KKDEMRNIPKGCLAILVGQEGEEQQKFVIPVIYINHPLFMQLLKEA 70
           +PH+ +FHHH    KK+++++IPKGCLAILVGQ GEEQQ+FVIPV+Y+NHPLFMQLLK+A
Sbjct: 26  IPHLQYFHHHQQQEKKEDLKDIPKGCLAILVGQ-GEEQQRFVIPVMYMNHPLFMQLLKKA 84

Query: 71  EEEYGFDQKGPITLPCHVEEFRTVQGMIDKDRSLLHHHHHHHVWCFRA 118
           EEEYGFDQKGPIT+PCHVE FR+VQG+IDKD+S LHH HHHH WCF+ 
Sbjct: 85  EEEYGFDQKGPITIPCHVEHFRSVQGLIDKDKS-LHHGHHHHAWCFKV 131

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225453575|ref|XP_002263012.1| PREDICTED: auxin-induced protein 10A5 [Vitis vinifera]

 Score =  145 bits (367), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 75/104 (72%), Positives = 88/104 (84%), Gaps = 6/104 (5%)

Query: 1   MGTGYHHHLNFHLHLPHIHFHHHGKKDEMRNIPKGCLAILVGQEGEEQQKFVIPVIYINH 60
           MG+G    LNFHLHLPH+H    GKK + R++PKGCLAI VGQ GEEQQ+F++PVIY NH
Sbjct: 1   MGSGEKGLLNFHLHLPHLH----GKK-QYRDVPKGCLAIKVGQ-GEEQQRFIVPVIYFNH 54

Query: 61  PLFMQLLKEAEEEYGFDQKGPITLPCHVEEFRTVQGMIDKDRSL 104
           PLFMQLLKEAEEEYGF+Q+G IT+PCHVEEFR VQGMID++ SL
Sbjct: 55  PLFMQLLKEAEEEYGFEQQGAITIPCHVEEFRYVQGMIDREHSL 98

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224120972|ref|XP_002318465.1| SAUR family protein [Populus trichocarpa] gi|222859138|gb|EEE96685.1| SAUR family protein [Populus trichocarpa]

 Score =  145 bits (367), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 77/114 (67%), Positives = 96/114 (84%), Gaps = 13/114 (11%)

Query: 1   MGTGYHHHLNFHLHLPHIHFHHH-----------GKKDEMRNIPKGCLAILVGQEGEEQQ 49
           MG+G  +HL+FH+HLP+ H HHH           GKK ++++IPKGCLA++VGQ GEEQQ
Sbjct: 1   MGSGDKNHLSFHIHLPNHHHHHHHHHHHHHHDHHGKK-QLKDIPKGCLAVMVGQ-GEEQQ 58

Query: 50  KFVIPVIYINHPLFMQLLKEAEEEYGFDQKGPITLPCHVEEFRTVQGMIDKDRS 103
           +FVIPVIYINHPLFMQLLKEAEEE+GFDQ+GPIT+PCHVEEFR VQGMI++++S
Sbjct: 59  RFVIPVIYINHPLFMQLLKEAEEEFGFDQEGPITIPCHVEEFRNVQGMIEEEKS 112

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224128011|ref|XP_002320219.1| SAUR family protein [Populus trichocarpa] gi|222860992|gb|EEE98534.1| SAUR family protein [Populus trichocarpa]

 Score =  144 bits (363), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 79/118 (66%), Positives = 92/118 (77%), Gaps = 8/118 (6%)

Query: 1   MGTGYHHHLNFHLHLPHIHFHHHGKKDEMRNIPKGCLAILVGQEGEEQQKFVIPVIYINH 60
           MG+G     NFHLH      H H  K + R++PKGCLAI VGQ GEEQQ+FV+PVIY NH
Sbjct: 1   MGSGEKSLRNFHLH----LPHLHHHKKQARDVPKGCLAIKVGQ-GEEQQRFVVPVIYFNH 55

Query: 61  PLFMQLLKEAEEEYGFDQKGPITLPCHVEEFRTVQGMIDKDRSLLHHHHHHHVWCFRA 118
           PLF+QLLKEAEEEYGFDQKG I++PCHVEEFR VQGMID+++S+   HHHH V CFRA
Sbjct: 56  PLFIQLLKEAEEEYGFDQKGTISIPCHVEEFRNVQGMIDREKSI---HHHHLVGCFRA 110

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	118
TAIR|locus:2062759	121	AT2G46690 "AT2G46690" [Arabido	0.652	0.636	0.714	7.1e-29
TAIR|locus:2079552	136	AT3G61900 "AT3G61900" [Arabido	0.669	0.580	0.683	9.4e-27
TAIR|locus:2134598	122	AT4G00880 "AT4G00880" [Arabido	0.601	0.581	0.736	1.1e-25
TAIR|locus:2168611	142	AT5G53590 "AT5G53590" [Arabido	0.601	0.5	0.547	3.5e-20
TAIR|locus:2127555	160	AT4G22620 "AT4G22620" [Arabido	0.610	0.45	0.472	1.3e-15
TAIR|locus:2101771	170	AT3G60690 [Arabidopsis thalian	0.576	0.4	0.470	2.6e-15
TAIR|locus:2139124	157	AT4G12410 "AT4G12410" [Arabido	0.593	0.445	0.485	4.2e-15
TAIR|locus:2050832	162	SAUR36 "AT2G45210" [Arabidopsi	0.567	0.413	0.477	6.2e-14
TAIR|locus:2005542	89	SAUR15 "AT4G38850" [Arabidopsi	0.601	0.797	0.430	1e-13
TAIR|locus:2116885	94	AT4G34800 "AT4G34800" [Arabido	0.559	0.702	0.470	2.7e-13

TAIR|locus:2062759 AT2G46690 "AT2G46690" [Arabidopsis thaliana (taxid:3702)]

 Score = 321 (118.1 bits), Expect = 7.1e-29, P = 7.1e-29
 Identities = 55/77 (71%), Positives = 70/77 (90%)

Query:    28 EMRNIPKGCLAILVGQEGEEQQKFVIPVIYINHPLFMQLLKEAEEEYGFDQKGPITLPCH 87
             +++++PKGCLAI VG +GEEQQ+F++PV+Y NHPLFMQLLKEAE+EYGFDQKG IT+PCH
Sbjct:    20 KVKDVPKGCLAIKVGSQGEEQQRFIVPVLYFNHPLFMQLLKEAEDEYGFDQKGTITIPCH 79

Query:    88 VEEFRTVQGMIDKDRSL 104
             VEEFR VQ +ID +RS+
Sbjct:    80 VEEFRYVQALIDGERSV 96

GO:0003674 "molecular_function" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0006816 "calcium ion transport" evidence=RCA

TAIR|locus:2079552 AT3G61900 "AT3G61900" [Arabidopsis thaliana (taxid:3702)]

 Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
 Identities = 54/79 (68%), Positives = 68/79 (86%)

Query:    26 KDEMRNIPKGCLAILVGQEGEEQQKFVIPVIYINHPLFMQLLKEAEEEYGFDQKGPITLP 85
             K  ++++PKGCLAI VG + EE+Q+FV+PV Y NHPLFMQLL+EAEEEYGF+QKG IT+P
Sbjct:    24 KHGIKDVPKGCLAIKVGSKEEEKQRFVVPVFYFNHPLFMQLLREAEEEYGFEQKGTITIP 83

Query:    86 CHVEEFRTVQGMIDKDRSL 104
             CHVE FR VQ MI+++RSL
Sbjct:    84 CHVEVFRYVQDMINRERSL 102

GO:0003674 "molecular_function" evidence=ND

GO:0005634 "nucleus" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2134598 AT4G00880 "AT4G00880" [Arabidopsis thaliana (taxid:3702)]

 Score = 291 (107.5 bits), Expect = 1.1e-25, P = 1.1e-25
 Identities = 53/72 (73%), Positives = 64/72 (88%)

Query:    32 IPKGCLAILVGQEGEEQQKFVIPVIYINHPLFMQLLKEAEEEYGFDQKGPITLPCHVEEF 91
             +PKGCLA+ VGQ GEEQ++FVIPV+Y NHPLF QLLKEAEEE+GF QKG IT+PCHVEEF
Sbjct:    28 VPKGCLAVKVGQ-GEEQERFVIPVMYFNHPLFGQLLKEAEEEFGFAQKGTITIPCHVEEF 86

Query:    92 RTVQGMIDKDRS 103
             R VQG+ID++ +
Sbjct:    87 RYVQGLIDRENT 98

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2168611 AT5G53590 "AT5G53590" [Arabidopsis thaliana (taxid:3702)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 40/73 (54%), Positives = 61/73 (83%)

Query:    31 NIPKGCLAILVGQEGEEQ--QKFVIPVIYINHPLFMQLLKEAEEEYGFDQKGPITLPCHV 88
             ++PKGC+AI+VG E +E+   +FV+P+++++HPLF+ LLKEAE+EYGF   GPIT+PC V
Sbjct:    45 DVPKGCVAIMVGHEDDEEGLHRFVVPLVFLSHPLFLDLLKEAEKEYGFKHDGPITIPCGV 104

Query:    89 EEFRTVQGMIDKD 101
             +EF+ VQ +ID++
Sbjct:   105 DEFKHVQEVIDEE 117

GO:0003674 "molecular_function" evidence=ND

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2127555 AT4G22620 "AT4G22620" [Arabidopsis thaliana (taxid:3702)]

 Score = 196 (74.1 bits), Expect = 1.3e-15, P = 1.3e-15
 Identities = 34/72 (47%), Positives = 50/72 (69%)

Query:    24 GKKDEMRNIPKGCLAILVGQEGEEQQKFVIPVIYINHPLFMQLLKEAEEEYGFDQKGPIT 83
             G + +   +P+G L + VG+ GE+ ++ V+PVIY NHPLF +LL++AE  YGF+Q G I 
Sbjct:    71 GNEPKTPTVPRGHLVVHVGESGEDTRRVVVPVIYFNHPLFGELLEQAERVYGFEQPGRIM 130

Query:    84 LPCHVEEFRTVQ 95
             +PC V +F  VQ
Sbjct:   131 IPCRVSDFEKVQ 142

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2101771 AT3G60690 [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 32/68 (47%), Positives = 51/68 (75%)

Query:    32 IPKGCLAILVGQEGEEQQKFVIPVIYINHPLFMQLLKEAEEEYGFDQKGPITLPCHVEEF 91
             +PKG  A+ +G++  + Q+ ++P++Y NHPLF +LL+EAEEE+GF Q+G IT+PC   +F
Sbjct:    88 VPKGHSAVYIGKKDGDFQRVLVPIVYFNHPLFGELLREAEEEFGFSQEGGITIPCPYSDF 147

Query:    92 RTVQGMID 99
             + VQ  I+
Sbjct:   148 KRVQTRIE 155

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:0009862 "systemic acquired resistance, salicylic acid mediated signaling pathway" evidence=RCA

TAIR|locus:2139124 AT4G12410 "AT4G12410" [Arabidopsis thaliana (taxid:3702)]

 Score = 191 (72.3 bits), Expect = 4.2e-15, P = 4.2e-15
 Identities = 34/70 (48%), Positives = 49/70 (70%)

Query:    26 KDEMRNIPKGCLAILVGQEGEEQQKFVIPVIYINHPLFMQLLKEAEEEYGFDQKGPITLP 85
             K   R +P+G L + VG+  ++ ++ V+PVIY NHPLF +LL++AE  +GFDQ G IT+P
Sbjct:    70 KKSNRVVPRGHLVVHVGESDDDTRRVVVPVIYFNHPLFGELLEQAERVHGFDQPGRITIP 129

Query:    86 CHVEEFRTVQ 95
             C V +F  VQ
Sbjct:   130 CRVSDFEKVQ 139

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

TAIR|locus:2050832 SAUR36 "AT2G45210" [Arabidopsis thaliana (taxid:3702)]

 Score = 180 (68.4 bits), Expect = 6.2e-14, P = 6.2e-14
 Identities = 32/67 (47%), Positives = 48/67 (71%)

Query:    32 IPKGCLAILVGQEGEEQQKFVIPVIYINHPLFMQLLKEAEEEYGFDQKGPITLPCHVEEF 91
             +P+G LAI VGQ+  +  + ++P++Y NHPLF +LL+EAE+EYGF  +G IT+PC   +F
Sbjct:    79 VPRGHLAIYVGQKDGDCHRVLVPIVYFNHPLFGELLREAEKEYGFCHEGGITIPCLYSDF 138

Query:    92 RTVQGMI 98
               V+  I
Sbjct:   139 ERVKTRI 145

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

GO:1900057 "positive regulation of leaf senescence" evidence=IMP

TAIR|locus:2005542 SAUR15 "AT4G38850" [Arabidopsis thaliana (taxid:3702)]

 Score = 178 (67.7 bits), Expect = 1.0e-13, P = 1.0e-13
 Identities = 31/72 (43%), Positives = 50/72 (69%)

Query:    28 EMRNIPKGCLAILVGQEGEEQQKFVIPVIYINHPLFMQLLKEAEEEYGFDQK-GPITLPC 86
             E  + P+G +A+ VG+  ++++++V+PV Y+N PLF QLL ++EEE+G+D   G +T+PC
Sbjct:    17 ESSSTPRGFMAVYVGENDQKKKRYVVPVSYLNQPLFQQLLSKSEEEFGYDHPMGGLTIPC 76

Query:    87 HVEEFRTVQGMI 98
             H   F TV   I
Sbjct:    77 HESLFFTVTSQI 88

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=IEP;ISS

TAIR|locus:2116885 AT4G34800 "AT4G34800" [Arabidopsis thaliana (taxid:3702)]

 Score = 174 (66.3 bits), Expect = 2.7e-13, P = 2.7e-13
 Identities = 32/68 (47%), Positives = 48/68 (70%)

Query:    25 KKDEMRNIPKGCLAILVGQEGEEQQKFVIPVIYINHPLFMQLLKEAEEEYGFDQK-GPIT 83
             +K + R +PKG +A+ VG+E E +++FV+P+ Y+NHP F  LL  AEEE+GF+   G +T
Sbjct:    15 QKQQSR-VPKGHVAVYVGEEMESKKRFVVPISYLNHPSFQGLLSRAEEEFGFNHPIGGLT 73

Query:    84 LPCHVEEF 91
             +PC  E F
Sbjct:    74 IPCREETF 81

GO:0003674 "molecular_function" evidence=ND

GO:0005739 "mitochondrion" evidence=ISM

GO:0009733 "response to auxin stimulus" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: SAUR23 SAUR family protein (118 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	118
pfam02519	99	pfam02519, Auxin_inducible, Auxin responsive prote	5e-31
PLN03220	105	PLN03220, PLN03220, uncharacterized protein; Provi	1e-13
PLN03090	104	PLN03090, PLN03090, auxin-responsive family protei	3e-12
PLN03219	108	PLN03219, PLN03219, uncharacterized protein; Provi	3e-12

>gnl|CDD|217082 pfam02519, Auxin_inducible, Auxin responsive protein

 Score =  105 bits (264), Expect = 5e-31
 Identities = 35/75 (46%), Positives = 49/75 (65%), Gaps = 3/75 (4%)

Query: 24 GKKDEMRNIPKGCLAILVGQEGEEQQKFVIPVIYINHPLFMQLLKEAEEEYGFDQKGPIT 83
            K    ++PKG  A+ VG   EE ++FV+P+ Y+NHPLF +LL  AEEE+GFDQ G +T
Sbjct: 27 SSKSSSADVPKGHFAVYVG---EETRRFVVPISYLNHPLFQELLDRAEEEFGFDQDGGLT 83

Query: 84 LPCHVEEFRTVQGMI 98
          +PC V  F  +  M+
Sbjct: 84 IPCDVVVFEHLLWML 98

This family consists of the protein products of the ARG7 auxin responsive genes family none of which have any identified functional role. Length = 99

>gnl|CDD|178759 PLN03220, PLN03220, uncharacterized protein; Provisional

 Score = 61.7 bits (149), Expect = 1e-13
 Identities = 28/63 (44%), Positives = 46/63 (73%), Gaps = 2/63 (3%)

Query: 31 NIPKGCLAILVGQEGE-EQQKFVIPVIYINHPLFMQLLKEAEEEYGFDQK-GPITLPCHV 88
          ++PKG +A+ VG++ E E+++FV+P+ ++NHP F + L  AEEE+GF+   G +T+PC  
Sbjct: 34 HVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFNHPMGGLTIPCRE 93

Query: 89 EEF 91
          E F
Sbjct: 94 EVF 96

Length = 105

>gnl|CDD|178639 PLN03090, PLN03090, auxin-responsive family protein; Provisional

 Score = 58.2 bits (141), Expect = 3e-12
 Identities = 26/68 (38%), Positives = 44/68 (64%), Gaps = 3/68 (4%)

Query: 31  NIPKGCLAILVGQEGEEQQKFVIPVIYINHPLFMQLLKEAEEEYGFDQKGPITLPCHVEE 90
           ++PKG   + VG   E + ++++P+ ++ HP F  LL++AEEE+GFD    +T+PC    
Sbjct: 39  DVPKGHFPVYVG---ENRSRYIVPISFLTHPEFQSLLQQAEEEFGFDHDMGLTIPCEEVV 95

Query: 91  FRTVQGMI 98
           FR++  MI
Sbjct: 96  FRSLTSMI 103

Length = 104

>gnl|CDD|178758 PLN03219, PLN03219, uncharacterized protein; Provisional

 Score = 58.2 bits (140), Expect = 3e-12
 Identities = 29/61 (47%), Positives = 43/61 (70%), Gaps = 2/61 (3%)

Query: 32 IPKGCLAILVGQEGEEQQKFVIPVIYINHPLFMQLLKEAEEEYGFDQK-GPITLPCHVEE 90
          +PKG +A+ VG++  E+++FV+P+ Y+NHPLF + L  AEEE GF    G +T+PC  E 
Sbjct: 39 VPKGHVAVYVGEQ-MEKKRFVVPISYLNHPLFREFLNRAEEECGFHHSMGGLTIPCREES 97

Query: 91 F 91
          F
Sbjct: 98 F 98

Length = 108

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	118
PF02519	100	Auxin_inducible: Auxin responsive protein; InterPr	100.0
PLN03090	104	auxin-responsive family protein; Provisional	99.98
PLN03220	105	uncharacterized protein; Provisional	99.97
PLN03219	108	uncharacterized protein; Provisional	99.97
PRK02899	197	adaptor protein; Provisional	86.87
PF02214	94	BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassi	84.61
PRK02315	233	adaptor protein; Provisional	83.49

>PF02519 Auxin_inducible: Auxin responsive protein; InterPro: IPR003676 This family consists of the protein products of a gene cluster that encodes a group of auxin-regulated RNAs (small auxin up RNAs, SAURs) []

Probab=100.00  E-value=5e-33  Score=197.70  Aligned_cols=67  Identities=51%  Similarity=1.045  Sum_probs=65.1

Q ss_pred             CCCCCCceEEEEEccCCCceeEEEEEecccCCHHHHHHHHHhHHhcCcCCCCCeEEccCHHHHHHHHHHH
Q 035928           29 MRNIPKGCLAILVGQEGEEQQKFVIPVIYINHPLFMQLLKEAEEEYGFDQKGPITLPCHVEEFRTVQGMI   98 (118)
Q Consensus        29 ~~~vpkG~~aVYVG~~gee~kRFvVPv~yLnhP~F~~LL~~AEEEfGf~~~G~L~IPCd~~~Fe~vl~~i   98 (118)
                      ..++|+||||||||+   +++||+||++|||||+|++||++|||||||+++|+|+|||++++|++++|+|
T Consensus        33 ~~~vp~G~~~VyVG~---~~~Rfvvp~~~L~hp~f~~LL~~aeeEfG~~~~G~l~iPC~~~~Fe~~l~~l   99 (100)
T PF02519_consen   33 ESDVPKGHFAVYVGE---ERRRFVVPVSYLNHPLFQELLEQAEEEFGFDQDGPLTIPCDVVLFEHLLWLL   99 (100)
T ss_pred             cCCCCCCeEEEEeCc---cceEEEechHHcCchhHHHHHHHHhhhcCcCCCCcEEeeCCHHHHHHHHHHh
Confidence            488999999999997   8999999999999999999999999999999999999999999999999997

Proteins from this ARG7 auxin responsive genes family have no identified functional role [].

>PLN03090 auxin-responsive family protein; Provisional

Probab=99.98  E-value=8.8e-33  Score=199.34  Aligned_cols=69  Identities=36%  Similarity=0.831  Sum_probs=65.8

Q ss_pred             CCCCCCCCceEEEEEccCCCceeEEEEEecccCCHHHHHHHHHhHHhcCcCCCCCeEEccCHHHHHHHHHHH
Q 035928           27 DEMRNIPKGCLAILVGQEGEEQQKFVIPVIYINHPLFMQLLKEAEEEYGFDQKGPITLPCHVEEFRTVQGMI   98 (118)
Q Consensus        27 ~~~~~vpkG~~aVYVG~~gee~kRFvVPv~yLnhP~F~~LL~~AEEEfGf~~~G~L~IPCd~~~Fe~vl~~i   98 (118)
                      ..+.+||+||||||||+   +++||+||++|||||+|++||++|||||||+++|+|+|||++++|++++|+|
T Consensus        35 ~~~~~vpkG~~aVyVG~---~~~RfvVp~~~L~hP~F~~LL~~aeeEfGf~~~G~L~IPC~~~~Fe~ll~~i  103 (104)
T PLN03090         35 GLPLDVPKGHFPVYVGE---NRSRYIVPISFLTHPEFQSLLQQAEEEFGFDHDMGLTIPCEEVVFRSLTSMI  103 (104)
T ss_pred             cCCCCCCCCcEEEEECC---CCEEEEEEHHHcCCHHHHHHHHHHHHHhCCCCCCcEEEeCCHHHHHHHHHHh
Confidence            35678999999999996   7899999999999999999999999999999999999999999999999998

>PLN03220 uncharacterized protein; Provisional

Probab=99.97  E-value=4.7e-32  Score=196.03  Aligned_cols=72  Identities=38%  Similarity=0.799  Sum_probs=65.0

Q ss_pred             CCCCCCCCCceEEEEEccCC-CceeEEEEEecccCCHHHHHHHHHhHHhcCcCC-CCCeEEccCHHHHHHHHHH
Q 035928           26 KDEMRNIPKGCLAILVGQEG-EEQQKFVIPVIYINHPLFMQLLKEAEEEYGFDQ-KGPITLPCHVEEFRTVQGM   97 (118)
Q Consensus        26 k~~~~~vpkG~~aVYVG~~g-ee~kRFvVPv~yLnhP~F~~LL~~AEEEfGf~~-~G~L~IPCd~~~Fe~vl~~   97 (118)
                      .+.+.+|||||||||||+++ .+++|||||++|||||+|++||++|||||||++ +|+|+|||+++.|++++.-
T Consensus        29 ~~~~~~VPkGh~aVyVGe~~~~e~kRFVVPv~yL~hP~F~~LL~~AeEEfGf~~~~G~L~IPCd~~~F~~ll~s  102 (105)
T PLN03220         29 SSSSDHVPKGHVAVYVGEQIEMEKKRFVVPISFLNHPSFKEFLSRAEEEFGFNHPMGGLTIPCREEVFLDLIAS  102 (105)
T ss_pred             ccccCCCCCCeEEEEECCCCCccceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEeeCCHHHHHHHHHh
Confidence            34567899999999999743 358999999999999999999999999999998 6999999999999999864

>PLN03219 uncharacterized protein; Provisional

Probab=99.97  E-value=1.3e-31  Score=194.57  Aligned_cols=72  Identities=40%  Similarity=0.780  Sum_probs=65.5

Q ss_pred             CCCCCCCCCceEEEEEccCCCceeEEEEEecccCCHHHHHHHHHhHHhcCcCC-CCCeEEccCHHHHHHHHHHH
Q 035928           26 KDEMRNIPKGCLAILVGQEGEEQQKFVIPVIYINHPLFMQLLKEAEEEYGFDQ-KGPITLPCHVEEFRTVQGMI   98 (118)
Q Consensus        26 k~~~~~vpkG~~aVYVG~~gee~kRFvVPv~yLnhP~F~~LL~~AEEEfGf~~-~G~L~IPCd~~~Fe~vl~~i   98 (118)
                      ...+..|||||||||||+ +++++||+||++|||||+|++||++|||||||.+ +|+|+|||+++.|++|++.-
T Consensus        33 ~~~~~~vpkGh~aVYVG~-~~E~kRFvVPi~yL~hP~F~~LL~~AeEEfGf~~~~G~L~IPCd~~~F~~ll~~~  105 (108)
T PLN03219         33 TTTSGLVPKGHVAVYVGE-QMEKKRFVVPISYLNHPLFREFLNRAEEECGFHHSMGGLTIPCREESFLHLITSH  105 (108)
T ss_pred             CCCCCCCCCCeEEEEECC-CCCceEEEEEHHHcCChHHHHHHHHHHHHhCCCCCCCCEEEeCCHHHHHHHHHhh
Confidence            345578999999999997 3468999999999999999999999999999997 69999999999999999763

>PRK02899 adaptor protein; Provisional

Probab=86.87  E-value=0.59  Score=36.67  Aligned_cols=24  Identities=42%  Similarity=0.916  Sum_probs=20.9

Q ss_pred             HHHHHHHHHhHHhcCcCCCCCeEE
Q 035928           61 PLFMQLLKEAEEEYGFDQKGPITL   84 (118)
Q Consensus        61 P~F~~LL~~AEEEfGf~~~G~L~I   84 (118)
                      -+|.++|++|..|+||.-+|||+|
T Consensus        39 ~lF~~mm~Ea~~e~~F~~~~pl~~   62 (197)
T PRK02899         39 QLFRDMMQEANKELGFEADGPIAV   62 (197)
T ss_pred             HHHHHHHHHhhhccCcccCCeEEE
Confidence            467777999999999999999876

>PF02214 BTB_2: BTB/POZ domain; InterPro: IPR003131 Potassium channels are the most diverse group of the ion channel family [, ]

Probab=84.61  E-value=1.4  Score=29.35  Aligned_cols=59  Identities=15%  Similarity=0.168  Sum_probs=44.7

Q ss_pred             EEEEccCCCceeEEEEEecccC-C--HHHHHHHHHhHHhcCcCCCCCeEEccCHHHHHHHHHHHhcc
Q 035928           38 AILVGQEGEEQQKFVIPVIYIN-H--PLFMQLLKEAEEEYGFDQKGPITLPCHVEEFRTVQGMIDKD  101 (118)
Q Consensus        38 aVYVG~~gee~kRFvVPv~yLn-h--P~F~~LL~~AEEEfGf~~~G~L~IPCd~~~Fe~vl~~i~~~  101 (118)
                      .+-||.     ++|.++.+.|. .  ..|..|++.......-..+|.+-|-++...|++|+..+...
T Consensus         2 ~lNVGG-----~~f~~~~~tL~~~~~s~l~~~~~~~~~~~~~~~~~~~fiDRdp~~F~~IL~ylr~~   63 (94)
T PF02214_consen    2 RLNVGG-----TIFETSRSTLTRYPDSLLARLFSGERSDDYDDDDGEYFIDRDPELFEYILNYLRTG   63 (94)
T ss_dssp             EEEETT-----EEEEEEHHHHHTSTTSTTTSHHHTGHGGGEETTTTEEEESS-HHHHHHHHHHHHHT
T ss_pred             EEEECC-----EEEEEcHHHHhhCCCChhhhHHhhccccccCCccceEEeccChhhhhHHHHHHhhc
Confidence            456774     89999999887 4  47888888652222223479999999999999999999874

They are important in shaping the action potential, and in neuronal excitability and plasticity []. The potassium channel family is composed of several functionally distinct isoforms, which can be broadly separated into 2 groups []: the practically non-inactivating 'delayed' group and the rapidly inactivating 'transient' group. These are all highly similar proteins, with only small amino acid changes causing the diversity of the voltage-dependent gating mechanism, channel conductance and toxin binding properties. Each type of K+ channel is activated by different signals and conditions depending on their type of regulation: some open in response to depolarisation of the plasma membrane; others in response to hyperpolarisation or an increase in intracellular calcium concentration; some can be regulated by binding of a transmitter, together with intracellular kinases; while others are regulated by GTP-binding proteins or other second messengers []. In eukaryotic cells, K+ channels are involved in neural signalling and generation of the cardiac rhythm, act as effectors in signal transduction pathways involving G protein-coupled receptors (GPCRs) and may have a role in target cell lysis by cytotoxic T-lymphocytes []. In prokaryotic cells, they play a role in the maintenance of ionic homeostasis []. All K+ channels discovered so far possess a core of alpha subunits, each comprising either one or two copies of a highly conserved pore loop domain (P-domain). The P-domain contains the sequence (T/SxxTxGxG), which has been termed the K+ selectivity sequence. In families that contain one P-domain, four subunits assemble to form a selective pathway for K+ across the membrane. However, it remains unclear how the 2 P-domain subunits assemble to form a selective pore. The functional diversity of these families can arise through homo- or hetero-associations of alpha subunits or association with auxiliary cytoplasmic beta subunits. K+ channel subunits containing one pore domain can be assigned into one of two superfamilies: those that possess six transmembrane (TM) domains and those that possess only two TM domains. The six TM domain superfamily can be further subdivided into conserved gene families: the voltage-gated (Kv) channels; the KCNQ channels (originally known as KvLQT channels); the EAG-like K+ channels; and three types of calcium (Ca)-activated K+ channels (BK, IK and SK) []. The 2TM domain family comprises inward-rectifying K+ channels. In addition, there are K+ channel alpha-subunits that possess two P-domains. These are usually highly regulated K+ selective leak channels. The Kv family can be divided into several subfamilies on the basis of sequence similarity and function. Four of these subfamilies, Kv1 (Shaker), Kv2 (Shab), Kv3 (Shaw) and Kv4 (Shal), consist of pore-forming alpha subunits that associate with different types of beta subunit. Each alpha subunit comprises six hydrophobic TM domains with a P-domain between the fifth and sixth, which partially resides in the membrane. The fourth TM domain has positively charged residues at every third residue and acts as a voltage sensor, which triggers the conformational change that opens the channel pore in response to a displacement in membrane potential []. More recently, 4 new electrically-silent alpha subunits have been cloned: Kv5 (KCNF), Kv6 (KCNG), Kv8 and Kv9 (KCNS). These subunits do not themselves possess any functional activity, but appear to form heteromeric channels with Kv2 subunits, and thus modulate Shab channel activity []. When highly expressed, they inhibit channel activity, but at lower levels show more specific modulatory actions. The N-terminal, cytoplasmic tetramerization domain (T1) of voltage-gated potassium channels encodes molecular determinants for subfamily-specific assembly of alpha-subunits into functional tetrameric channels []. This domain is found in a subset of a larger group of proteins that contain the BTB/POZ domain.; GO: 0005249 voltage-gated potassium channel activity, 0006813 potassium ion transport, 0008076 voltage-gated potassium channel complex, 0016020 membrane; PDB: 1NN7_A 3KVT_A 1EXB_E 1QDV_A 1DSX_E 1QDW_F 3LUT_B 3LNM_B 2A79_B 3DRY_C ....

>PRK02315 adaptor protein; Provisional

Probab=83.49  E-value=0.91  Score=36.30  Aligned_cols=24  Identities=29%  Similarity=0.692  Sum_probs=22.2

Q ss_pred             HHHHHHHHHhHHhcCcCCCCCeEE
Q 035928           61 PLFMQLLKEAEEEYGFDQKGPITL   84 (118)
Q Consensus        61 P~F~~LL~~AEEEfGf~~~G~L~I   84 (118)
                      -+|.++|++|..|+||..+|||+|
T Consensus        39 ~fF~~mm~Ea~~e~~F~~~~pl~~   62 (233)
T PRK02315         39 EFFYSMMDEVDEEDDFADEGPLWF   62 (233)
T ss_pred             HHHHHHHHHhccccCcccCCeEEE
Confidence            579999999999999999999976

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Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	118
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	8e-04

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 36.8 bits (84), Expect = 8e-04
 Identities = 13/109 (11%), Positives = 30/109 (27%), Gaps = 27/109 (24%)

Query: 23  HGKKDEMRNIPKGCLAILVGQEGEEQQKFVIPVIYIN-------HPLFMQLLK---EAEE 72
            G    +    K  +A+ V    + Q K    + ++N         +   L K   + + 
Sbjct: 156 DG----VLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP 211

Query: 73  EYGFDQKGPITLPCHVEEFRTVQGMIDKDRSLLHHHHHH-------HVW 114
            +         +   +   +       + R LL    +        +V 
Sbjct: 212 NWTSRSDHSSNIKLRIHSIQ------AELRRLLKSKPYENCLLVLLNVQ 254

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00