Citrus Sinensis ID: 035938

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130---
Protein Sequence
MANNKGKGGKKFKNRKRGKNNEGEDQKRELIIKEEGQEYAEVLRMLGNGRLRLHWRHQAMHKRVWIAAGDIILVGFRIYQDDKADVILINTPDEAKRLKNIGELPDGTRLNEGLLLILMMTPMLFQDNDIDKI
Secondary Structure (PSIPRED)
cccccccccccccccccccccccccccEEEEcccccEEEEEEEEEccccEEEEEEEcccccEEEEEEEccEEEEEccccccccEEEEEEccHHHHHHHHHccccccccEEcccccccccccccEEEccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccccccccccccccccEEccccccccEEEEEEEEccccEEEEEEEcccEEEEEEEEcccEEEEEccccccccccEEEEccHHHHHHHHHccccccccEEEcccccccccccEEEcccccccc
Coil and Loop (DISEMBL)
mannkgkggkkfknrkrgknnegedqKRELIIKEEGQEYAEVLRMLGNGRLRLHWRHQAMHKRVWIAAGDIILVGFriyqddkadviLINTPDEAKRlknigelpdgtrlnEGLLLILMMtpmlfqdndidki
Flexible Loop (DISEMBL)
mannkgkggkkfknrkrgknnegedqkreliiKEEGQEYAEVLRMLGNGRLRLHWRHQAMHKRVWIAAGDIILVGFRIYQDDKADVILINTPDEakrlknigelpdgtrlNEGLLLILMMtpmlfqdndidki
Low Complexity Region (SEG)
MAnnkgkggkkfknrkrgknnegeDQKRELIIKEEGQEYAEVLRMLGNGRLRLHWRHQAMHKRVWIAAGDIILVGFRIYQDDKADVILINTPDEAKRLKNIGELPDGTRLNEGLLLILMMTPMLFQDNDIDKI
Disordered region (IsUnstruct)
*******************************I**EGQEYAEVLRMLGNGRLRLHWRHQAMHKRVWIAAGDIILVGFRIYQDDKADVILINTPDEAKRLKNIGELPDGTRLNEGLLLILMMTPMLFQ*******
Disordered Region (DISOPRED)
*******************************IKEEGQEYAEVLRMLGNGRLRLHWRHQAMHKRVWIAAGDIILVGFRIYQDDKADVILINTPDEAKRLKNIGELPDGTRLNEGLLLILMMTPMLFQDNDIDK*
Disordered Region (DISEMBL)
************************DQKRELIIKEEGQEYAEVLRMLGNGRLRLHWRHQAMHKRVWIAAGDIILVGFRIYQDDKADVILINTPDEAKRLKNIGELPDGTRLNEGLLLILMMTPMLFQDNDIDKI
Disordered Region (DISPRO)
**************************KRELIIKEEGQEYAEVLRMLGNGRLRLHWRHQAMHKRVWIAAGDIILVGFRIYQDDKADVILINTPDEAKRLKNIGELPDGTRLNEGLLLILMMTPMLFQDN*****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MANNKGKGGKKFKNRKRGKNNEGEDQKRELIIKEEGQEYAEVLRMLGNGRLRLHWRHQAMHKRVWIAAGDIILVGFRIYQDDKADVILINTPDEAKRLKNIGELPDGTRLNEGLLLILMMTPMLFQDNDIDKI
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	133	2.2.26 [Sep-21-2011]
P56331	145	Eukaryotic translation in	N/A	no	0.969	0.889	0.617	3e-35
P47815	144	Eukaryotic translation in	N/A	no	0.947	0.875	0.569	1e-32
P47814	144	Eukaryotic translation in	yes	no	0.812	0.75	0.561	2e-26
Q5RA42	144	Eukaryotic translation in	yes	no	0.812	0.75	0.561	2e-26
Q8BMJ3	144	Eukaryotic translation in	yes	no	0.812	0.75	0.561	2e-26
P47813	144	Eukaryotic translation in	yes	no	0.812	0.75	0.561	2e-26
O14602	144	Eukaryotic translation in	yes	no	0.812	0.75	0.561	2e-26
Q6GVM3	144	Eukaryotic translation in	yes	no	0.812	0.75	0.561	2e-26
Q6VV72	144	Eukaryotic translation in	yes	no	0.812	0.75	0.553	3e-26
Q60872	144	Eukaryotic translation in	yes	no	0.812	0.75	0.553	3e-26

>sp|P56331|IF1A_ONOVI Eukaryotic translation initiation factor 1A OS=Onobrychis viciifolia PE=2 SV=2

 Score =  146 bits (369), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 92/149 (61%), Positives = 101/149 (67%), Gaps = 20/149 (13%)

Query: 1   MANNKGKGGKKFKNRKRGKNNEGEDQKRELIIKEEGQEYAEVLRMLGNGRL--------- 51
           M  NKGKGGK   NRKRGKN E +D KREL+ KE+GQEYA+VLRMLGNGR          
Sbjct: 1   MPKNKGKGGK---NRKRGKN-EADDDKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTK 56

Query: 52  RLHWRHQAMHKRVWIAAGDIILVGFRIYQDDKADVILINTPDEAKRLKNIGELPDGTRLN 111
           RL      MHK+VWIAAGDIILVG R YQDDKADVIL   PDEA+ LK  GELPD TRLN
Sbjct: 57  RLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKLMPDEARLLKAYGELPDNTRLN 116

Query: 112 EGL----LLILMMTP---MLFQDNDIDKI 133
           EG+    L   M T    + F+D DIDKI
Sbjct: 117 EGIGAGGLDEEMDTANDYIEFEDEDIDKI 145

Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.
Onobrychis viciifolia (taxid: 3882)

>sp|P47815|IF1A_WHEAT Eukaryotic translation initiation factor 1A OS=Triticum aestivum PE=1 SV=2

 Score =  138 bits (347), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 86/151 (56%), Positives = 97/151 (64%), Gaps = 25/151 (16%)

Query: 1   MANNKGKGGKKFKNRKRGKNNEGEDQKRELIIKEEGQEYAEVLRMLGNGRL--------- 51
           M  NKGKGGK   NRKRGKN E +D KREL+ KE+GQEYA+V RMLGNGR          
Sbjct: 1   MPKNKGKGGK---NRKRGKN-EADDDKRELVFKEDGQEYAQVTRMLGNGRCEAICVDGTK 56

Query: 52  RLHWRHQAMHKRVWIAAGDIILVGFRIYQDDKADVILINTPDEAKRLKNIGELPDGTRLN 111
           RL      MHK+VWIAAGDI+LVG R YQDDKADVIL    DEA+ LK  GELPD  RLN
Sbjct: 57  RLCHIRGKMHKKVWIAAGDIVLVGLRDYQDDKADVILKYMNDEARLLKAYGELPDTVRLN 116

Query: 112 EGLLLILMMTP---------MLFQDNDIDKI 133
           EG   + +  P         + F+D DIDKI
Sbjct: 117 EG---VDVDGPEEGEGDSDYIQFEDEDIDKI 144

Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.

Triticum aestivum (taxid: 4565)

>sp|P47814|IF1A_RABIT Eukaryotic translation initiation factor 1A OS=Oryctolagus cuniculus GN=EIF1A PE=1 SV=2

 Score =  117 bits (294), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/121 (56%), Positives = 82/121 (67%), Gaps = 13/121 (10%)

Query: 1   MANNKGKGGKKFKNRKRGKNNEGEDQKRELIIKEEGQEYAEVLRMLGNGRL--------- 51
           M  NKGKGGK   NR+RGKN E E +KREL+ KE+GQEYA+V++MLGNGRL         
Sbjct: 1   MPKNKGKGGK---NRRRGKN-ENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMLFDGVK 56

Query: 52  RLHWRHQAMHKRVWIAAGDIILVGFRIYQDDKADVILINTPDEAKRLKNIGELPDGTRLN 111
           RL      + K+VWI   DIILVG R YQD+KADVIL    DEA+ LK  GELP+  ++N
Sbjct: 57  RLFHIRGKLRKKVWINTSDIILVGLREYQDNKADVILKYNADEARSLKAYGELPEHAKIN 116

Query: 112 E 112
           E
Sbjct: 117 E 117

Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.

Oryctolagus cuniculus (taxid: 9986)

>sp|Q5RA42|IF1AX_PONAB Eukaryotic translation initiation factor 1A, X-chromosomal OS=Pongo abelii GN=EIF1AX PE=2 SV=3

 Score =  117 bits (294), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/121 (56%), Positives = 82/121 (67%), Gaps = 13/121 (10%)

Query: 1   MANNKGKGGKKFKNRKRGKNNEGEDQKRELIIKEEGQEYAEVLRMLGNGRL--------- 51
           M  NKGKGGK   NR+RGKN E E +KREL+ KE+GQEYA+V++MLGNGRL         
Sbjct: 1   MPKNKGKGGK---NRRRGKN-ENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVK 56

Query: 52  RLHWRHQAMHKRVWIAAGDIILVGFRIYQDDKADVILINTPDEAKRLKNIGELPDGTRLN 111
           RL      + K+VWI   DIILVG R YQD+KADVIL    DEA+ LK  GELP+  ++N
Sbjct: 57  RLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKIN 116

Query: 112 E 112
           E
Sbjct: 117 E 117

Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.

Pongo abelii (taxid: 9601)

>sp|Q8BMJ3|IF1AX_MOUSE Eukaryotic translation initiation factor 1A, X-chromosomal OS=Mus musculus GN=Eif1ax PE=2 SV=3

 Score =  117 bits (294), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/121 (56%), Positives = 82/121 (67%), Gaps = 13/121 (10%)

Query: 1   MANNKGKGGKKFKNRKRGKNNEGEDQKRELIIKEEGQEYAEVLRMLGNGRL--------- 51
           M  NKGKGGK   NR+RGKN E E +KREL+ KE+GQEYA+V++MLGNGRL         
Sbjct: 1   MPKNKGKGGK---NRRRGKN-ENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVK 56

Query: 52  RLHWRHQAMHKRVWIAAGDIILVGFRIYQDDKADVILINTPDEAKRLKNIGELPDGTRLN 111
           RL      + K+VWI   DIILVG R YQD+KADVIL    DEA+ LK  GELP+  ++N
Sbjct: 57  RLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKIN 116

Query: 112 E 112
           E
Sbjct: 117 E 117

Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.

Mus musculus (taxid: 10090)

>sp|P47813|IF1AX_HUMAN Eukaryotic translation initiation factor 1A, X-chromosomal OS=Homo sapiens GN=EIF1AX PE=1 SV=2

 Score =  117 bits (294), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/121 (56%), Positives = 82/121 (67%), Gaps = 13/121 (10%)

Query: 1   MANNKGKGGKKFKNRKRGKNNEGEDQKRELIIKEEGQEYAEVLRMLGNGRL--------- 51
           M  NKGKGGK   NR+RGKN E E +KREL+ KE+GQEYA+V++MLGNGRL         
Sbjct: 1   MPKNKGKGGK---NRRRGKN-ENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVK 56

Query: 52  RLHWRHQAMHKRVWIAAGDIILVGFRIYQDDKADVILINTPDEAKRLKNIGELPDGTRLN 111
           RL      + K+VWI   DIILVG R YQD+KADVIL    DEA+ LK  GELP+  ++N
Sbjct: 57  RLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKIN 116

Query: 112 E 112
           E
Sbjct: 117 E 117

Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.

Homo sapiens (taxid: 9606)

>sp|O14602|IF1AY_HUMAN Eukaryotic translation initiation factor 1A, Y-chromosomal OS=Homo sapiens GN=EIF1AY PE=1 SV=4

 Score =  117 bits (294), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/121 (56%), Positives = 82/121 (67%), Gaps = 13/121 (10%)

Query: 1   MANNKGKGGKKFKNRKRGKNNEGEDQKRELIIKEEGQEYAEVLRMLGNGRL--------- 51
           M  NKGKGGK   NR+RGKN E E +KREL+ KE+GQEYA+V++MLGNGRL         
Sbjct: 1   MPKNKGKGGK---NRRRGKN-ENESEKRELVFKEDGQEYAQVIKMLGNGRLEALCFDGVK 56

Query: 52  RLHWRHQAMHKRVWIAAGDIILVGFRIYQDDKADVILINTPDEAKRLKNIGELPDGTRLN 111
           RL      + K+VWI   DIILVG R YQD+KADVIL    DEA+ LK  GELP+  ++N
Sbjct: 57  RLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKIN 116

Query: 112 E 112
           E
Sbjct: 117 E 117

Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.

Homo sapiens (taxid: 9606)

>sp|Q6GVM3|IF1AY_PANTR Eukaryotic translation initiation factor 1A, Y-chromosomal OS=Pan troglodytes GN=EIF1AY PE=2 SV=3

 Score =  117 bits (294), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 68/121 (56%), Positives = 82/121 (67%), Gaps = 13/121 (10%)

Query: 1   MANNKGKGGKKFKNRKRGKNNEGEDQKRELIIKEEGQEYAEVLRMLGNGRL--------- 51
           M  NKGKGGK   NR+RGKN E E +KREL+ KE+GQEYA+V++MLGNGRL         
Sbjct: 1   MPKNKGKGGK---NRRRGKN-ENESEKRELVFKEDGQEYAQVIKMLGNGRLEALCFDGVK 56

Query: 52  RLHWRHQAMHKRVWIAAGDIILVGFRIYQDDKADVILINTPDEAKRLKNIGELPDGTRLN 111
           RL      + K+VWI   DIILVG R YQD+KADVIL    DEA+ LK  GELP+  ++N
Sbjct: 57  RLCHIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKIN 116

Query: 112 E 112
           E
Sbjct: 117 E 117

Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.

Pan troglodytes (taxid: 9598)

>sp|Q6VV72|IF1A_RAT Eukaryotic translation initiation factor 1A OS=Rattus norvegicus GN=Eif1a PE=2 SV=3

 Score =  117 bits (292), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 67/121 (55%), Positives = 82/121 (67%), Gaps = 13/121 (10%)

Query: 1   MANNKGKGGKKFKNRKRGKNNEGEDQKRELIIKEEGQEYAEVLRMLGNGRL--------- 51
           M  NKGKGGK   NR+RGKN E E +KREL+ KE+GQEYA+V++MLGNGRL         
Sbjct: 1   MPKNKGKGGK---NRRRGKN-ENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVR 56

Query: 52  RLHWRHQAMHKRVWIAAGDIILVGFRIYQDDKADVILINTPDEAKRLKNIGELPDGTRLN 111
           RL      + K+VWI   DIIL+G R YQD+KADVIL    DEA+ LK  GELP+  ++N
Sbjct: 57  RLCHIRGKLRKKVWINTSDIILIGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKIN 116

Query: 112 E 112
           E
Sbjct: 117 E 117

Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.

Rattus norvegicus (taxid: 10116)

>sp|Q60872|IF1A_MOUSE Eukaryotic translation initiation factor 1A OS=Mus musculus GN=Eif1a PE=2 SV=3

 Score =  117 bits (292), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 67/121 (55%), Positives = 82/121 (67%), Gaps = 13/121 (10%)

Query: 1   MANNKGKGGKKFKNRKRGKNNEGEDQKRELIIKEEGQEYAEVLRMLGNGRL--------- 51
           M  NKGKGGK   NR+RGKN E E +KREL+ KE+GQEYA+V++MLGNGRL         
Sbjct: 1   MPKNKGKGGK---NRRRGKN-ENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVR 56

Query: 52  RLHWRHQAMHKRVWIAAGDIILVGFRIYQDDKADVILINTPDEAKRLKNIGELPDGTRLN 111
           RL      + K+VWI   DIIL+G R YQD+KADVIL    DEA+ LK  GELP+  ++N
Sbjct: 57  RLCHIRGKLRKKVWINTSDIILIGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKIN 116

Query: 112 E 112
           E
Sbjct: 117 E 117

Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits.

Mus musculus (taxid: 10090)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	133
426207786	145	eukaryotic translation initiation factor	0.969	0.889	0.604	1e-34
356506032	145	PREDICTED: eukaryotic translation initia	0.969	0.889	0.604	7e-34
197312901	144	translation initiation factor [Rheum aus	0.969	0.895	0.594	7e-34
388519939	145	unknown [Lotus japonicus]	0.969	0.889	0.590	7e-34
317159553	145	eukaryotic translation initiation factor	0.969	0.889	0.604	8e-34
356520336	145	PREDICTED: eukaryotic translation initia	0.969	0.889	0.604	8e-34
255576103	145	eif-1a, putative [Ricinus communis] gi|2	0.969	0.889	0.604	8e-34
449453559	145	PREDICTED: eukaryotic translation initia	0.969	0.889	0.590	9e-34
356560650	145	PREDICTED: eukaryotic translation initia	0.969	0.889	0.604	9e-34
224068883	145	predicted protein [Populus trichocarpa]	0.969	0.889	0.604	1e-33

>gi|426207786|gb|AFY13532.1| eukaryotic translation initiation factor 1A [Aeschynomene evenia] gi|426207788|gb|AFY13533.1| eukaryotic translation initiation factor 1A [Aeschynomene evenia] gi|426207790|gb|AFY13534.1| eukaryotic translation initiation factor 1A [Aeschynomene evenia] gi|426207792|gb|AFY13535.1| eukaryotic translation initiation factor 1A [Aeschynomene evenia] gi|426207794|gb|AFY13536.1| eukaryotic translation initiation factor 1A [Aeschynomene evenia] gi|426207796|gb|AFY13537.1| eukaryotic translation initiation factor 1A [Aeschynomene evenia] gi|426207798|gb|AFY13538.1| eukaryotic translation initiation factor 1A [Aeschynomene evenia] gi|426207800|gb|AFY13539.1| eukaryotic translation initiation factor 1A [Aeschynomene evenia] gi|426207802|gb|AFY13540.1| eukaryotic translation initiation factor 1A [Aeschynomene evenia] gi|426207804|gb|AFY13541.1| eukaryotic translation initiation factor 1A [Aeschynomene evenia] gi|426207806|gb|AFY13542.1| eukaryotic translation initiation factor 1A [Aeschynomene evenia] gi|426207808|gb|AFY13543.1| eukaryotic translation initiation factor 1A [Aeschynomene evenia] gi|426207810|gb|AFY13544.1| eukaryotic translation initiation factor 1A [Aeschynomene denticulata] gi|443578570|gb|AGC95054.1| eukaryotic translation initiation factor 1A [Aeschynomene evenia] gi|443578572|gb|AGC95055.1| eukaryotic translation initiation factor 1A [Aeschynomene evenia] gi|443578574|gb|AGC95056.1| eukaryotic translation initiation factor 1A [Aeschynomene ciliata]

 Score =  151 bits (381), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 90/149 (60%), Positives = 101/149 (67%), Gaps = 20/149 (13%)

Query: 1   MANNKGKGGKKFKNRKRGKNNEGEDQKRELIIKEEGQEYAEVLRMLGNGRL--------- 51
           M  NKGKGGK   NRKRGKN E +D+KREL+ KE+GQEYA+VLRMLGNGR          
Sbjct: 1   MPKNKGKGGK---NRKRGKN-EADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTK 56

Query: 52  RLHWRHQAMHKRVWIAAGDIILVGFRIYQDDKADVILINTPDEAKRLKNIGELPDGTRLN 111
           RL      MHK+VWIAAGDIILVG R YQDDKADVIL   PDEA+ LK  GELPD TRLN
Sbjct: 57  RLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPDTTRLN 116

Query: 112 EGLLLILMMTP-------MLFQDNDIDKI 133
           EG++  L           + F+D DIDKI
Sbjct: 117 EGVVGALDDDDDQTANDYIEFEDEDIDKI 145

Source: Aeschynomene evenia

Species: Aeschynomene evenia

Genus: Aeschynomene

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356506032|ref|XP_003521792.1| PREDICTED: eukaryotic translation initiation factor 1A-like [Glycine max] gi|356573185|ref|XP_003554744.1| PREDICTED: eukaryotic translation initiation factor 1A-like [Glycine max]

 Score =  148 bits (374), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 90/149 (60%), Positives = 100/149 (67%), Gaps = 20/149 (13%)

Query: 1   MANNKGKGGKKFKNRKRGKNNEGEDQKRELIIKEEGQEYAEVLRMLGNGRL--------- 51
           M  NKGKGGK   NRKRGKN E +D+KREL+ KE+GQEYA+VLRMLGNGR          
Sbjct: 1   MPKNKGKGGK---NRKRGKN-EADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTK 56

Query: 52  RLHWRHQAMHKRVWIAAGDIILVGFRIYQDDKADVILINTPDEAKRLKNIGELPDGTRLN 111
           RL      MHK+VWIAAGDIILVG R YQDDKADVIL   PDEA+ LK  GELPD TRLN
Sbjct: 57  RLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPDTTRLN 116

Query: 112 EGLLLIL-------MMTPMLFQDNDIDKI 133
           EG+   L           + F+D DIDKI
Sbjct: 117 EGIGAGLDEEDDATANDYIEFEDEDIDKI 145

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|197312901|gb|ACH63231.1| translation initiation factor [Rheum australe]

 Score =  148 bits (374), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 88/148 (59%), Positives = 99/148 (66%), Gaps = 19/148 (12%)

Query: 1   MANNKGKGGKKFKNRKRGKNNEGEDQKRELIIKEEGQEYAEVLRMLGNGRL--------- 51
           M  NKGKGGK   NRKRGKN E +D+KREL+ KE+GQEYA+VLRMLGNGR          
Sbjct: 1   MPKNKGKGGK---NRKRGKN-EADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDNTK 56

Query: 52  RLHWRHQAMHKRVWIAAGDIILVGFRIYQDDKADVILINTPDEAKRLKNIGELPDGTRLN 111
           RL      MHK+VWIAAGDIILVG R YQDDKADVIL   PDEA+ LK  GELPD  RLN
Sbjct: 57  RLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPDNIRLN 116

Query: 112 EGLLLILMMTP------MLFQDNDIDKI 133
           EG+  +           + F+D DIDKI
Sbjct: 117 EGIATLDEEDDGAADDYIEFEDEDIDKI 144

Source: Rheum australe

Species: Rheum australe

Genus: Rheum

Family: Polygonaceae

Order: Caryophyllales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|388519939|gb|AFK48031.1| unknown [Lotus japonicus]

 Score =  148 bits (373), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 88/149 (59%), Positives = 99/149 (66%), Gaps = 20/149 (13%)

Query: 1   MANNKGKGGKKFKNRKRGKNNEGEDQKRELIIKEEGQEYAEVLRMLGNGRL--------- 51
           M  NKGKGGK   NRKRGKN E +D+KREL+ KE+GQEYA+VLRMLGNGR          
Sbjct: 1   MPKNKGKGGK---NRKRGKN-EADDEKRELVFKEDGQEYAQVLRMLGNGRCEATCIDGTK 56

Query: 52  RLHWRHQAMHKRVWIAAGDIILVGFRIYQDDKADVILINTPDEAKRLKNIGELPDGTRLN 111
           RL      MHK+VWIAAGDI+LVG R YQDDKADVIL   PDEA+ LK  GELPD TRLN
Sbjct: 57  RLCHIRGKMHKKVWIAAGDIVLVGLRDYQDDKADVILKYMPDEARLLKAYGELPDSTRLN 116

Query: 112 EGL-------LLILMMTPMLFQDNDIDKI 133
           EG+               + F+D DIDKI
Sbjct: 117 EGIGGGLDEEDDADANDYIEFEDEDIDKI 145

Source: Lotus japonicus

Species: Lotus japonicus

Genus: Lotus

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|317159553|gb|ADV04051.1| eukaryotic translation initiation factor 1Aa [Hevea brasiliensis] gi|317159555|gb|ADV04052.1| eukaryotic translation initiation factor 1Ab [Hevea brasiliensis]

 Score =  148 bits (373), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 90/149 (60%), Positives = 100/149 (67%), Gaps = 20/149 (13%)

Query: 1   MANNKGKGGKKFKNRKRGKNNEGEDQKRELIIKEEGQEYAEVLRMLGNGRL--------- 51
           M  NKGKGGK   NRKRGKN E +D+KRELI KE+GQEYA+VLRMLGNGR          
Sbjct: 1   MPKNKGKGGK---NRKRGKN-EADDEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGSK 56

Query: 52  RLHWRHQAMHKRVWIAAGDIILVGFRIYQDDKADVILINTPDEAKRLKNIGELPDGTRLN 111
           RL      MHK+VWIAAGDIILVG R YQDDKADVIL   PDEA+ LK  GELP+ TRLN
Sbjct: 57  RLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 116

Query: 112 EGLLLILMMTP-------MLFQDNDIDKI 133
           EG+   L           + F+D DIDKI
Sbjct: 117 EGIAGGLDEEDDGAGDDYIEFEDEDIDKI 145

Source: Hevea brasiliensis

Species: Hevea brasiliensis

Genus: Hevea

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356520336|ref|XP_003528819.1| PREDICTED: eukaryotic translation initiation factor 1A-like [Glycine max]

 Score =  148 bits (373), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 90/149 (60%), Positives = 100/149 (67%), Gaps = 20/149 (13%)

Query: 1   MANNKGKGGKKFKNRKRGKNNEGEDQKRELIIKEEGQEYAEVLRMLGNGRL--------- 51
           M  NKGKGGK   NRKRGKN E +D+KREL+ KE+GQEYA+VLRMLGNGR          
Sbjct: 1   MPKNKGKGGK---NRKRGKN-EADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTK 56

Query: 52  RLHWRHQAMHKRVWIAAGDIILVGFRIYQDDKADVILINTPDEAKRLKNIGELPDGTRLN 111
           RL      MHK+VWIAAGDIILVG R YQDDKADVIL   PDEA+ LK  GELPD TRLN
Sbjct: 57  RLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPDSTRLN 116

Query: 112 EGLLLILMMTP-------MLFQDNDIDKI 133
           EG+   L           + F+D DIDKI
Sbjct: 117 EGIGAGLDEEEDGAGNDYIEFEDEDIDKI 145

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255576103|ref|XP_002528946.1| eif-1a, putative [Ricinus communis] gi|223531592|gb|EEF33420.1| eif-1a, putative [Ricinus communis]

 Score =  148 bits (373), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 90/149 (60%), Positives = 100/149 (67%), Gaps = 20/149 (13%)

Query: 1   MANNKGKGGKKFKNRKRGKNNEGEDQKRELIIKEEGQEYAEVLRMLGNGRL--------- 51
           M  NKGKGGK   NRKRGKN E +D+KRELI KE+GQEYA+VLRMLGNGR          
Sbjct: 1   MPKNKGKGGK---NRKRGKN-EADDEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGTK 56

Query: 52  RLHWRHQAMHKRVWIAAGDIILVGFRIYQDDKADVILINTPDEAKRLKNIGELPDGTRLN 111
           RL      MHK+VWIAAGDIILVG R YQDDKADVIL   PDEA+ LK  GELP+ TRLN
Sbjct: 57  RLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPESTRLN 116

Query: 112 EGLLLILMMTP-------MLFQDNDIDKI 133
           EG+   L           + F+D DIDKI
Sbjct: 117 EGIAGGLDEEDDGAGDDYIEFEDEDIDKI 145

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449453559|ref|XP_004144524.1| PREDICTED: eukaryotic translation initiation factor 1A-like [Cucumis sativus] gi|449527843|ref|XP_004170918.1| PREDICTED: eukaryotic translation initiation factor 1A-like [Cucumis sativus]

 Score =  148 bits (373), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 88/149 (59%), Positives = 100/149 (67%), Gaps = 20/149 (13%)

Query: 1   MANNKGKGGKKFKNRKRGKNNEGEDQKRELIIKEEGQEYAEVLRMLGNGRL--------- 51
           M  NKGKGGK   NRKRGKN E +D+KREL+ KE+GQEYA+VLRMLGNGR          
Sbjct: 1   MPKNKGKGGK---NRKRGKN-EADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTK 56

Query: 52  RLHWRHQAMHKRVWIAAGDIILVGFRIYQDDKADVILINTPDEAKRLKNIGELPDGTRLN 111
           RL      MHK+VWIAAGDIILVG R YQDDKADVIL   PDEA+ LK  GELP+ TRLN
Sbjct: 57  RLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLN 116

Query: 112 EGLL-------LILMMTPMLFQDNDIDKI 133
           EG++              + F+D DIDKI
Sbjct: 117 EGIVGGMDDDDEGGGDAYIEFEDEDIDKI 145

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356560650|ref|XP_003548603.1| PREDICTED: eukaryotic translation initiation factor 1A-like [Glycine max]

 Score =  148 bits (373), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 90/149 (60%), Positives = 100/149 (67%), Gaps = 20/149 (13%)

Query: 1   MANNKGKGGKKFKNRKRGKNNEGEDQKRELIIKEEGQEYAEVLRMLGNGRL--------- 51
           M  NKGKGGK   NRKRGKN E +D+KREL+ KE+GQEYA+VLRMLGNGR          
Sbjct: 1   MPKNKGKGGK---NRKRGKN-EADDEKRELVFKEDGQEYAQVLRMLGNGRCEAMCIDGTK 56

Query: 52  RLHWRHQAMHKRVWIAAGDIILVGFRIYQDDKADVILINTPDEAKRLKNIGELPDGTRLN 111
           RL      MHK+VWIAAGDIILVG R YQDDKADVIL   PDEA+ LK  GELPD TRLN
Sbjct: 57  RLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPDTTRLN 116

Query: 112 EGLLLILMMTP-------MLFQDNDIDKI 133
           EG+   L           + F+D DIDKI
Sbjct: 117 EGIDAGLDEEEDGSGNDYIEFEDEDIDKI 145

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224068883|ref|XP_002302848.1| predicted protein [Populus trichocarpa] gi|118485559|gb|ABK94631.1| unknown [Populus trichocarpa] gi|222844574|gb|EEE82121.1| predicted protein [Populus trichocarpa]

 Score =  147 bits (371), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 90/149 (60%), Positives = 100/149 (67%), Gaps = 20/149 (13%)

Query: 1   MANNKGKGGKKFKNRKRGKNNEGEDQKRELIIKEEGQEYAEVLRMLGNGRL--------- 51
           M  NKGKGGK   NRKRGKN E +D+KRELI KE+GQEYA+VLRMLGNGR          
Sbjct: 1   MPKNKGKGGK---NRKRGKN-EADDEKRELIFKEDGQEYAQVLRMLGNGRCEATCIDGTK 56

Query: 52  RLHWRHQAMHKRVWIAAGDIILVGFRIYQDDKADVILINTPDEAKRLKNIGELPDGTRLN 111
           RL      MHK+VWIAAGDIILVG R YQDDKADVIL   PDEA+ LK  GELP+ TRLN
Sbjct: 57  RLCHIRGKMHKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLN 116

Query: 112 EGLLLILMMTP-------MLFQDNDIDKI 133
           EG+   L           + F+D DIDKI
Sbjct: 117 EGIAGGLDEEDDGAGDDYIEFEDEDIDKI 145

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	133
TAIR|locus:2058389	145	AT2G04520 [Arabidopsis thalian	0.812	0.744	0.579	1.5e-26
GENEDB_PFALCIPARUM|PF11_0447	155	PF11_0447 "translation initiat	0.654	0.561	0.604	1.9e-21
UNIPROTKB|Q8IHT2	155	PF11_0447 "Translation initiat	0.654	0.561	0.604	1.9e-21
WB|WBGene00019162	216	eif-1.A [Caenorhabditis elegan	0.646	0.398	0.568	1.9e-21
FB|FBgn0026250	148	eIF-1A "Eukaryotic initiation	0.684	0.614	0.549	4.9e-21
UNIPROTKB|Q32LC3	144	EIF1AX "Uncharacterized protei	0.646	0.597	0.556	3.5e-20
UNIPROTKB|J9NYQ8	144	EIF1AX "Uncharacterized protei	0.646	0.597	0.556	3.5e-20
UNIPROTKB|O14602	144	EIF1AY "Eukaryotic translation	0.646	0.597	0.556	3.5e-20
UNIPROTKB|P47813	144	EIF1AX "Eukaryotic translation	0.646	0.597	0.556	3.5e-20
UNIPROTKB|F1SQN5	144	EIF1AX "Uncharacterized protei	0.646	0.597	0.556	3.5e-20

TAIR|locus:2058389 AT2G04520 [Arabidopsis thaliana (taxid:3702)]

 Score = 299 (110.3 bits), Expect = 1.5e-26, P = 1.5e-26
 Identities = 73/126 (57%), Positives = 86/126 (68%)

Query:    25 DQKRELIIKEEGQEYAEVLRMLGNGRL---------RL-HWRHQAMHKRVWIAAGDIILV 74
             D+KRELI KE+GQEYA+VLRMLGNGR          RL H R + MHK+VWIAAGDI+LV
Sbjct:    21 DEKRELIFKEDGQEYAQVLRMLGNGRCEAMCIDGTKRLCHIRGK-MHKKVWIAAGDIVLV 79

Query:    75 GFRIYQDDKADVILINTPDEAKRLKNIGELPDGTRLNEGLLLILMMTP-------MLFQD 127
             G R YQDDKADVIL    DEA+ LK  GELP+ TRLNEG++  L           + F+D
Sbjct:    80 GLRDYQDDKADVILKYMSDEARLLKAYGELPENTRLNEGIVGDLEDDDDNNDDDYVEFED 139

Query:   128 NDIDKI 133
              DID+I
Sbjct:   140 EDIDRI 145

GO:0003723 "RNA binding" evidence=IEA

GO:0003743 "translation initiation factor activity" evidence=IEA;ISS

GO:0005634 "nucleus" evidence=ISM

GO:0006413 "translational initiation" evidence=IEA;ISS

GO:0005829 "cytosol" evidence=IDA

GENEDB_PFALCIPARUM|PF11_0447 PF11_0447 "translation initiation factor eIF-1A, putative" [Plasmodium falciparum (taxid:5833)]

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 58/96 (60%), Positives = 66/96 (68%)

Query:    26 QKRELIIKEEGQEYAEVLRMLGNGRLRLHW-----R--H--QAMHKRVWIAAGDIILVGF 76
             +KREL+ KEE QEYA+VLRMLGNGRL  H      R  H    M KRVWI +GDIILV  
Sbjct:    22 EKRELLYKEEDQEYAQVLRMLGNGRLEAHCFDGVKRLCHIRGKMRKRVWINSGDIILVSL 81

Query:    77 RIYQDDKADVILINTPDEAKRLKNIGELPDGTRLNE 112
             R YQD KADVI   TPDEA+ LK  GELP+  ++NE
Sbjct:    82 RDYQDSKADVIAKYTPDEARSLKAHGELPETAKINE 117

GO:0016282 "eukaryotic 43S preinitiation complex" evidence=ISS

UNIPROTKB|Q8IHT2 PF11_0447 "Translation initiation factor eIF-1A, putative" [Plasmodium falciparum 3D7 (taxid:36329)]

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 58/96 (60%), Positives = 66/96 (68%)

Query:    26 QKRELIIKEEGQEYAEVLRMLGNGRLRLHW-----R--H--QAMHKRVWIAAGDIILVGF 76
             +KREL+ KEE QEYA+VLRMLGNGRL  H      R  H    M KRVWI +GDIILV  
Sbjct:    22 EKRELLYKEEDQEYAQVLRMLGNGRLEAHCFDGVKRLCHIRGKMRKRVWINSGDIILVSL 81

Query:    77 RIYQDDKADVILINTPDEAKRLKNIGELPDGTRLNE 112
             R YQD KADVI   TPDEA+ LK  GELP+  ++NE
Sbjct:    82 RDYQDSKADVIAKYTPDEARSLKAHGELPETAKINE 117

GO:0016282 "eukaryotic 43S preinitiation complex" evidence=ISS

WB|WBGene00019162 eif-1.A [Caenorhabditis elegans (taxid:6239)]

 Score = 251 (93.4 bits), Expect = 1.9e-21, P = 1.9e-21
 Identities = 54/95 (56%), Positives = 67/95 (70%)

Query:    27 KRELIIKEEGQEYAEVLRMLGNGRLRLHW---RHQAMH------KRVWIAAGDIILVGFR 77
             KREL +KEEGQEY +V +MLGNGR+++     + +  H      K+VWI  GDIILVG R
Sbjct:    23 KRELDLKEEGQEYGQVSKMLGNGRVQVFCFDGKQRVCHIRGKLRKKVWINVGDIILVGLR 82

Query:    78 IYQDDKADVILINTPDEAKRLKNIGELPDGTRLNE 112
              YQDDK DVIL  TPDEA+RLKN G +P+  +LNE
Sbjct:    83 DYQDDKGDVILKYTPDEARRLKNEGLIPENAKLNE 117

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0006413 "translational initiation" evidence=IEA

GO:0003723 "RNA binding" evidence=IEA

GO:0040010 "positive regulation of growth rate" evidence=IMP

GO:0009792 "embryo development ending in birth or egg hatching" evidence=IMP

GO:0040018 "positive regulation of multicellular organism growth" evidence=IMP

GO:0040011 "locomotion" evidence=IMP

GO:0000003 "reproduction" evidence=IMP

GO:0006898 "receptor-mediated endocytosis" evidence=IMP

GO:0008340 "determination of adult lifespan" evidence=IMP

FB|FBgn0026250 eIF-1A "Eukaryotic initiation factor 1A" [Drosophila melanogaster (taxid:7227)]

 Score = 247 (92.0 bits), Expect = 4.9e-21, P = 4.9e-21
 Identities = 56/102 (54%), Positives = 69/102 (67%)

Query:    26 QKRELIIKEEGQEYAEVLRMLGNGRL---------RL-HWRHQAMHKRVWIAAGDIILVG 75
             +KRELI KE+ QEYA+V +MLGNGRL         RL H R + + K+VWI  G+IILVG
Sbjct:    22 EKRELIFKEDQQEYAQVTKMLGNGRLEAMCFDGVKRLCHIRGK-LRKKVWINQGEIILVG 80

Query:    76 FRIYQDDKADVILINTPDEAKRLKNIGELPDGTRLNEGLLLI 117
              R YQD KADVIL  TPDEA+ LK  GE P+  R+NE +  +
Sbjct:    81 LRDYQDSKADVILKYTPDEARNLKTYGEFPESVRINETVTFV 122

GO:0003743 "translation initiation factor activity" evidence=ISS

GO:0005829 "cytosol" evidence=ISS;NAS

GO:0006412 "translation" evidence=ISS

GO:0006413 "translational initiation" evidence=IEA;ISS;NAS

GO:0016282 "eukaryotic 43S preinitiation complex" evidence=ISS

GO:0007224 "smoothened signaling pathway" evidence=IGI

GO:0006911 "phagocytosis, engulfment" evidence=IMP

GO:0000022 "mitotic spindle elongation" evidence=IMP

GO:0007052 "mitotic spindle organization" evidence=IMP

UNIPROTKB|Q32LC3 EIF1AX "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 54/97 (55%), Positives = 68/97 (70%)

Query:    26 QKRELIIKEEGQEYAEVLRMLGNGRL---------RL-HWRHQAMHKRVWIAAGDIILVG 75
             +KREL+ KE+GQEYA+V++MLGNGRL         RL H R + + K+VWI   DIILVG
Sbjct:    22 EKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGK-LRKKVWINTSDIILVG 80

Query:    76 FRIYQDDKADVILINTPDEAKRLKNIGELPDGTRLNE 112
              R YQD+KADVIL    DEA+ LK  GELP+  ++NE
Sbjct:    81 LRDYQDNKADVILKYNADEARSLKAYGELPEHAKINE 117

GO:0003743 "translation initiation factor activity" evidence=IEA

UNIPROTKB|J9NYQ8 EIF1AX "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 54/97 (55%), Positives = 68/97 (70%)

Query:    26 QKRELIIKEEGQEYAEVLRMLGNGRL---------RL-HWRHQAMHKRVWIAAGDIILVG 75
             +KREL+ KE+GQEYA+V++MLGNGRL         RL H R + + K+VWI   DIILVG
Sbjct:    22 EKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGK-LRKKVWINTSDIILVG 80

Query:    76 FRIYQDDKADVILINTPDEAKRLKNIGELPDGTRLNE 112
              R YQD+KADVIL    DEA+ LK  GELP+  ++NE
Sbjct:    81 LRDYQDNKADVILKYNADEARSLKAYGELPEHAKINE 117

GO:0003743 "translation initiation factor activity" evidence=IEA

UNIPROTKB|O14602 EIF1AY "Eukaryotic translation initiation factor 1A, Y-chromosomal" [Homo sapiens (taxid:9606)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 54/97 (55%), Positives = 68/97 (70%)

Query:    26 QKRELIIKEEGQEYAEVLRMLGNGRL---------RL-HWRHQAMHKRVWIAAGDIILVG 75
             +KREL+ KE+GQEYA+V++MLGNGRL         RL H R + + K+VWI   DIILVG
Sbjct:    22 EKRELVFKEDGQEYAQVIKMLGNGRLEALCFDGVKRLCHIRGK-LRKKVWINTSDIILVG 80

Query:    76 FRIYQDDKADVILINTPDEAKRLKNIGELPDGTRLNE 112
              R YQD+KADVIL    DEA+ LK  GELP+  ++NE
Sbjct:    81 LRDYQDNKADVILKYNADEARSLKAYGELPEHAKINE 117

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

UNIPROTKB|P47813 EIF1AX "Eukaryotic translation initiation factor 1A, X-chromosomal" [Homo sapiens (taxid:9606)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 54/97 (55%), Positives = 68/97 (70%)

Query:    26 QKRELIIKEEGQEYAEVLRMLGNGRL---------RL-HWRHQAMHKRVWIAAGDIILVG 75
             +KREL+ KE+GQEYA+V++MLGNGRL         RL H R + + K+VWI   DIILVG
Sbjct:    22 EKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGK-LRKKVWINTSDIILVG 80

Query:    76 FRIYQDDKADVILINTPDEAKRLKNIGELPDGTRLNE 112
              R YQD+KADVIL    DEA+ LK  GELP+  ++NE
Sbjct:    81 LRDYQDNKADVILKYNADEARSLKAYGELPEHAKINE 117

GO:0003743 "translation initiation factor activity" evidence=IEA

GO:0008135 "translation factor activity, nucleic acid binding" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0006412 "translation" evidence=TAS

GO:0006413 "translational initiation" evidence=TAS

GO:0010467 "gene expression" evidence=TAS

GO:0044267 "cellular protein metabolic process" evidence=TAS

UNIPROTKB|F1SQN5 EIF1AX "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 239 (89.2 bits), Expect = 3.5e-20, P = 3.5e-20
 Identities = 54/97 (55%), Positives = 68/97 (70%)

Query:    26 QKRELIIKEEGQEYAEVLRMLGNGRL---------RL-HWRHQAMHKRVWIAAGDIILVG 75
             +KREL+ KE+GQEYA+V++MLGNGRL         RL H R + + K+VWI   DIILVG
Sbjct:    22 EKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGK-LRKKVWINTSDIILVG 80

Query:    76 FRIYQDDKADVILINTPDEAKRLKNIGELPDGTRLNE 112
              R YQD+KADVIL    DEA+ LK  GELP+  ++NE
Sbjct:    81 LRDYQDNKADVILKYNADEARSLKAYGELPEHAKINE 117

GO:0003743 "translation initiation factor activity" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q6GVM3	IF1AY_PANTR	No assigned EC number	0.5619	0.8120	0.75	yes	no
Q8BMJ3	IF1AX_MOUSE	No assigned EC number	0.5619	0.8120	0.75	yes	no
P47813	IF1AX_HUMAN	No assigned EC number	0.5619	0.8120	0.75	yes	no
P47814	IF1A_RABIT	No assigned EC number	0.5619	0.8120	0.75	yes	no
P47815	IF1A_WHEAT	No assigned EC number	0.5695	0.9473	0.875	N/A	no
Q5RA42	IF1AX_PONAB	No assigned EC number	0.5619	0.8120	0.75	yes	no
Q6VV72	IF1A_RAT	No assigned EC number	0.5537	0.8120	0.75	yes	no
P56331	IF1A_ONOVI	No assigned EC number	0.6174	0.9699	0.8896	N/A	no
P55877	IF1A_SCHPO	No assigned EC number	0.5371	0.8120	0.7826	yes	no
Q54YJ6	IF1A_DICDI	No assigned EC number	0.5702	0.8045	0.7588	yes	no
Q60872	IF1A_MOUSE	No assigned EC number	0.5537	0.8120	0.75	yes	no
O14602	IF1AY_HUMAN	No assigned EC number	0.5619	0.8120	0.75	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	grail3.0034007902	SubName- Full=Putative uncharacterized protein;; Seems to be required for maximal rate of protein biosynthesis. Enhances ribosome dissociation into subunits and stabilizes the binding of the initiator Met-tRNA(I) to 40 S ribosomal subunits (By similarity) (145 aa)
		(Populus trichocarpa)
Predicted Functional Partners:
	gw1.XV.2119.1	hypothetical protein (465 aa)	•						•		0.625
	estExt_fgenesh4_pg.C_860156	hypothetical protein (603 aa)			•	•					0.463
	gw1.III.1174.1	hypothetical protein (611 aa)			•	•					0.462
	grail3.0033024301	SubName- Full=Putative uncharacterized protein; (92 aa)			•						0.462
	estExt_fgenesh4_kg.C_290007	SubName- Full=Putative uncharacterized protein; (93 aa)			•						0.461
	estExt_Genewise1_v1.C_400205	SubName- Full=Putative uncharacterized protein; (92 aa)			•						0.461
	estExt_Genewise1_v1.C_1180211	SubName- Full=Putative uncharacterized protein; (93 aa)			•						0.461
	estExt_fgenesh4_pm.C_LG_VIII0284	hypothetical protein (343 aa)			•	•		•			0.460
	grail3.0022009302	hypothetical protein (343 aa)			•	•		•			0.451
	gw1.I.1422.1	annotation not avaliable (132 aa)			•	•					0.451

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	133
PLN00208	145	PLN00208, PLN00208, translation initiation factor	2e-44
PTZ00329	155	PTZ00329, PTZ00329, eukaryotic translation initiat	2e-41
smart00652	83	smart00652, eIF1a, eukaryotic translation initiati	6e-20
cd05793	77	cd05793, S1_IF1A, S1_IF1A: Translation initiation	1e-19
TIGR00523	99	TIGR00523, eIF-1A, eukaryotic/archaeal initiation	1e-14
pfam01176	65	pfam01176, eIF-1a, Translation initiation factor 1	2e-11
cd04456	78	cd04456, S1_IF1A_like, S1_IF1A_like: Translation i	1e-10
PRK04012	100	PRK04012, PRK04012, translation initiation factor	2e-10
COG0361	75	COG0361, InfA, Translation initiation factor 1 (IF	1e-06

>gnl|CDD|177798 PLN00208, PLN00208, translation initiation factor (eIF); Provisional

 Score =  141 bits (358), Expect = 2e-44
 Identities = 89/149 (59%), Positives = 99/149 (66%), Gaps = 20/149 (13%)

Query: 1   MANNKGKGGKKFKNRKRGKNNEGEDQKRELIIKEEGQEYAEVLRMLGNGRL--------- 51
           M  NKGKGGK   NRKRGKN E +D+KRELI KE+GQEYA+VLRMLGNGR          
Sbjct: 1   MPKNKGKGGK---NRKRGKN-EADDEKRELIFKEDGQEYAQVLRMLGNGRCEALCIDGTK 56

Query: 52  RLHWRHQAMHKRVWIAAGDIILVGFRIYQDDKADVILINTPDEAKRLKNIGELPDGTRLN 111
           RL      M K+VWIAAGDIILVG R YQDDKADVIL   PDEA+ LK  GELP+ TRLN
Sbjct: 57  RLCHIRGKMRKKVWIAAGDIILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLN 116

Query: 112 EGLLLILMMTP-------MLFQDNDIDKI 133
           EG+   L           + F+D DIDKI
Sbjct: 117 EGIAGDLDEEEDGEGDDYIEFEDEDIDKI 145

Length = 145

>gnl|CDD|185558 PTZ00329, PTZ00329, eukaryotic translation initiation factor 1A; Provisional

 Score =  134 bits (339), Expect = 2e-41
 Identities = 73/122 (59%), Positives = 83/122 (68%), Gaps = 13/122 (10%)

Query: 1   MANNKGKGGKKFKNRKRGKNNEGEDQKRELIIKEEGQEYAEVLRMLGNGRL--------- 51
           M  NKGKGGK   NR+RGKN + E +KREL+ KEEGQEYA+VLRMLGNGRL         
Sbjct: 1   MPKNKGKGGK---NRRRGKN-DNEGEKRELVFKEEGQEYAQVLRMLGNGRLEAYCFDGVK 56

Query: 52  RLHWRHQAMHKRVWIAAGDIILVGFRIYQDDKADVILINTPDEAKRLKNIGELPDGTRLN 111
           RL      M KRVWI  GDIILV  R +QD KADVIL  TPDEA+ LK  GELP+  ++N
Sbjct: 57  RLCHIRGKMRKRVWINIGDIILVSLRDFQDSKADVILKYTPDEARALKQHGELPETAKIN 116

Query: 112 EG 113
           E 
Sbjct: 117 ET 118

Length = 155

>gnl|CDD|128900 smart00652, eIF1a, eukaryotic translation initiation factor 1A

 Score = 77.3 bits (191), Expect = 6e-20
 Identities = 41/82 (50%), Positives = 50/82 (60%), Gaps = 9/82 (10%)

Query: 33  KEEGQEYAEVLRMLGNGRL---------RLHWRHQAMHKRVWIAAGDIILVGFRIYQDDK 83
           KE+GQE A+V++MLGNGRL         RL      M K+VWI  GDI+LV    +QD K
Sbjct: 2   KEDGQEIAQVVKMLGNGRLEVMCADGKERLARIPGKMRKKVWIRRGDIVLVDPWDFQDVK 61

Query: 84  ADVILINTPDEAKRLKNIGELP 105
           AD+I   T DE + LK  GELP
Sbjct: 62  ADIIYKYTKDEVRWLKKEGELP 83

Length = 83

>gnl|CDD|240219 cd05793, S1_IF1A, S1_IF1A: Translation initiation factor IF1A, also referred to as eIF1A in eukaryotes and aIF1A in archaea, S1-like RNA-binding domain

 Score = 76.4 bits (189), Expect = 1e-19
 Identities = 38/78 (48%), Positives = 47/78 (60%), Gaps = 11/78 (14%)

Query: 37  QEYAEVLRMLGNGRLRL----------HWRHQAMHKRVWIAAGDIILVGFRIYQDDKADV 86
           +EY +V +MLGNGRL +            R + M KRVWI  GDI+LV    +QDDKAD+
Sbjct: 1   EEYGQVEKMLGNGRLEVRCFDGKKRLCRIRGK-MRKRVWINEGDIVLVAPWDFQDDKADI 59

Query: 87  ILINTPDEAKRLKNIGEL 104
           I   TPDE + LK  GEL
Sbjct: 60  IYKYTPDEVRWLKRKGEL 77

S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. IF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. This protein family is only found in eukaryotes and archaea. Length = 77

>gnl|CDD|129614 TIGR00523, eIF-1A, eukaryotic/archaeal initiation factor 1A

 Score = 64.5 bits (157), Expect = 1e-14
 Identities = 32/99 (32%), Positives = 49/99 (49%), Gaps = 11/99 (11%)

Query: 17  RGKNNEGEDQKRELIIKEEGQEYAEVLRMLGNGRL---------RLHWRHQAMHKRVWIA 67
           RG+  E +  +  L  KEEG+    + +MLG GR+         RL      + KR+WI 
Sbjct: 1   RGQQQE-QQIRVRLPRKEEGEILGVIEQMLGAGRVKVRCLDGKTRLGRIPGKLKKRIWIR 59

Query: 68  AGDIILVGFRIYQ-DDKADVILINTPDEAKRLKNIGELP 105
            GD+++V    +Q DDK D++   T  + + LK  G L 
Sbjct: 60  EGDVVIVKPWEFQGDDKCDIVWRYTKTQVEWLKRKGYLK 98

Recommended nomenclature: eIF-1A for eukaryotes, aIF-1A for Archaea. Also called eIF-4C [Protein synthesis, Translation factors]. Length = 99

>gnl|CDD|216345 pfam01176, eIF-1a, Translation initiation factor 1A / IF-1

 Score = 55.2 bits (134), Expect = 2e-11
 Identities = 23/66 (34%), Positives = 30/66 (45%), Gaps = 11/66 (16%)

Query: 34 EEGQEYAEVLRMLGNGRLRL----------HWRHQAMHKRVWIAAGDIILVGFRIYQDDK 83
          EEG+   +V  MLGNGR  +          H   +   KR+WI  GD +LV    Y   K
Sbjct: 1  EEGEMIGQVTEMLGNGRFEVELEDGHERLAHIPGK-RRKRIWILRGDFVLVELSPYDKTK 59

Query: 84 ADVILI 89
           D+I  
Sbjct: 60 GDIIYR 65

This family includes both the eukaryotic translation factor eIF-1A and the bacterial translation initiation factor IF-1. Length = 65

>gnl|CDD|239903 cd04456, S1_IF1A_like, S1_IF1A_like: Translation initiation factor IF1A-like, S1-like RNA-binding domain

 Score = 53.7 bits (129), Expect = 1e-10
 Identities = 27/78 (34%), Positives = 36/78 (46%), Gaps = 10/78 (12%)

Query: 37  QEYAEVLRMLGNGRL---------RLHWRHQAMHKRVWIAAGDIILVGFRIYQDD-KADV 86
           Q+   VLRMLGN R          RL      + K +WI  GD ++V      +D KAD+
Sbjct: 1   QQIVRVLRMLGNNRHEVECADGQRRLVSIPGKLRKNIWIKRGDFLIVDPIEEGEDVKADI 60

Query: 87  ILINTPDEAKRLKNIGEL 104
           I +   D  + LK  G L
Sbjct: 61  IFVYCKDHVRSLKKEGFL 78

IF1A is also referred to as eIF1A in eukaryotes and aIF1A in archaea. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. IF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. This protein family is only found in eukaryotes and archaea. Length = 78

>gnl|CDD|179708 PRK04012, PRK04012, translation initiation factor IF-1A; Provisional

 Score = 53.4 bits (129), Expect = 2e-10
 Identities = 30/99 (30%), Positives = 50/99 (50%), Gaps = 9/99 (9%)

Query: 16  KRGKNNEGEDQKRELIIKEEGQEYAEVLRMLGNGRLRL-----HWRH----QAMHKRVWI 66
            + K ++ E  +  L + EEG+ +  V +MLG  R+R+       R       M KR+WI
Sbjct: 1   MKKKQDDEEVTRVRLPMPEEGEVFGVVEQMLGANRVRVRCMDGVERMGRIPGKMKKRMWI 60

Query: 67  AAGDIILVGFRIYQDDKADVILINTPDEAKRLKNIGELP 105
             GD+++V    +QD+KAD+I   T  +   L+  G + 
Sbjct: 61  REGDVVIVAPWDFQDEKADIIWRYTKPQVDWLRRKGYIS 99

Length = 100

>gnl|CDD|223438 COG0361, InfA, Translation initiation factor 1 (IF-1) [Translation, ribosomal structure and biogenesis]

 Score = 43.0 bits (102), Expect = 1e-06
 Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 10/72 (13%)

Query: 33 KEEGQEYAEVLRMLGNGRLRL----------HWRHQAMHKRVWIAAGDIILVGFRIYQDD 82
           +E +    V+ ML NGR R+          H   +    R+ I  GD++LV    Y   
Sbjct: 4  PDEIEMEGTVIEMLPNGRFRVELENGHERLAHISGKMRKNRIRILPGDVVLVELSPYDLT 63

Query: 83 KADVILINTPDE 94
          K  ++     DE
Sbjct: 64 KGRIVYRYKKDE 75

Length = 75

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	133
PTZ00329	155	eukaryotic translation initiation factor 1A; Provi	100.0
PLN00208	145	translation initiation factor (eIF); Provisional	100.0
KOG3403	145	consensus Translation initiation factor 1A (eIF-1A	100.0
TIGR00523	99	eIF-1A eukaryotic/archaeal initiation factor 1A. R	100.0
PRK04012	100	translation initiation factor IF-1A; Provisional	99.98
smart00652	83	eIF1a eukaryotic translation initiation factor 1A.	99.97
cd04456	78	S1_IF1A_like S1_IF1A_like: Translation initiation	99.96
cd05793	77	S1_IF1A S1_IF1A: Translation initiation factor IF1	99.95
cd05792	78	S1_eIF1AD_like S1_eIF1AD_like: eukaryotic translat	99.95
COG0361	75	InfA Translation initiation factor 1 (IF-1) [Trans	99.92
PF01176	65	eIF-1a: Translation initiation factor 1A / IF-1; I	99.87
KOG2925	167	consensus Predicted translation initiation factor	99.85
TIGR00008	68	infA translation initiation factor IF-1. This fami	99.84
PRK12442	87	translation initiation factor IF-1; Reviewed	99.82
CHL00010	78	infA translation initiation factor 1	99.58
PRK00276	72	infA translation initiation factor IF-1; Validated	99.57
cd04451	64	S1_IF1 S1_IF1: Translation Initiation Factor IF1,	99.17
cd04466	68	S1_YloQ_GTPase S1_YloQ_GTPase: YloQ GTase family (	96.97
PRK12289	352	GTPase RsgA; Reviewed	92.36
PRK00098	298	GTPase RsgA; Reviewed	92.27
cd01854	287	YjeQ_engC YjeQ/EngC. YjeQ (YloQ in Bacillus subtil	92.14
PRK12288	347	GTPase RsgA; Reviewed	88.31
PRK01889	356	GTPase RsgA; Reviewed	85.94
cd00164	65	S1_like S1_like: Ribosomal protein S1-like RNA-bin	81.02

>PTZ00329 eukaryotic translation initiation factor 1A; Provisional

Probab=100.00  E-value=1.8e-48  Score=299.62  Aligned_cols=121  Identities=61%  Similarity=0.897  Sum_probs=117.7

Q ss_pred             CCCCCCCCCCccccccccCccCCcccceeeeccCCCeEEEEEEEecCCceE---------EEEEeccccceeeEeecCCE
Q 035938            1 MANNKGKGGKKFKNRKRGKNNEGEDQKRELIIKEEGQEYAEVLRMLGNGRL---------RLHWRHQAMHKRVWIAAGDI   71 (133)
Q Consensus         1 m~~~~~k~gk~~~n~~r~~~~~~~~~~~el~~p~e~e~~g~V~~~lGn~~~---------~la~IpGKmrkriWI~~GD~   71 (133)
                      ||+|||||||   |+||||+ +++...++|++|++||+||+|+++|||++|         +||||||||||+|||++||+
T Consensus         1 mpk~kgkggk---~~~rgk~-~~~~~~rel~~~eegq~~g~V~~~LGn~~f~V~c~dG~~rLa~I~GKmRK~IWI~~GD~   76 (155)
T PTZ00329          1 MPKNKGKGGK---NRRRGKN-DNEGEKRELVFKEEGQEYAQVLRMLGNGRLEAYCFDGVKRLCHIRGKMRKRVWINIGDI   76 (155)
T ss_pred             CCCCCCCCCc---ccccccc-cCccceeeeccCCCCcEEEEEEEEcCCCEEEEEECCCCEEEEEeeccceeeEEecCCCE
Confidence            9999999999   9999999 999999999999999999999999999998         99999999999999999999


Q ss_pred             EEEEeeeCCCCeEEEEEEcCHhHHHHHHHcCCCCccccccccc-ccccCCcceee
Q 035938           72 ILVGFRIYQDDKADVILINTPDEAKRLKNIGELPDGTRLNEGL-LLILMMTPMLF  125 (133)
Q Consensus        72 VlV~~~~~~~~KgdIv~ry~~dqik~L~k~g~~P~~f~~~e~~-~~~~~~~~~~f  125 (133)
                      |+|+||+|+++||+|||||+++||++|+++|+||+.|.+|++. ||.++++.++|
T Consensus        77 VlVel~~yd~~KgdIi~Ry~~devr~Lk~~g~~P~~~~~~~~~~~~~~~~~~~~f  131 (155)
T PTZ00329         77 ILVSLRDFQDSKADVILKYTPDEARALKQHGELPETAKINETDIFDDEGDDGIEF  131 (155)
T ss_pred             EEEeccCCCCCEEEEEEEcCHHHHHHHHHcCCCCcceeeccccccCcCcCCCeEE
Confidence            9999999999999999999999999999999999999999988 88777778999

>PLN00208 translation initiation factor (eIF); Provisional

Probab=100.00  E-value=5.7e-48  Score=294.29  Aligned_cols=129  Identities=68%  Similarity=0.986  Sum_probs=122.6

Q ss_pred             CCCCCCCCCCccccccccCccCCcccceeeeccCCCeEEEEEEEecCCceE---------EEEEeccccceeeEeecCCE
Q 035938            1 MANNKGKGGKKFKNRKRGKNNEGEDQKRELIIKEEGQEYAEVLRMLGNGRL---------RLHWRHQAMHKRVWIAAGDI   71 (133)
Q Consensus         1 m~~~~~k~gk~~~n~~r~~~~~~~~~~~el~~p~e~e~~g~V~~~lGn~~~---------~la~IpGKmrkriWI~~GD~   71 (133)
                      ||+|||||||   |+||+|+ +++.+.++|++|++||+||+|+++|||++|         +||||||||||+|||++||+
T Consensus         1 m~k~k~kggk---~~~~~k~-~~~~~~~el~~p~egq~~g~V~~~lGn~~~~V~c~dG~~rLa~IpGKmRKrIWI~~GD~   76 (145)
T PLN00208          1 MPKNKGKGGK---NRKRGKN-EADDEKRELIFKEDGQEYAQVLRMLGNGRCEALCIDGTKRLCHIRGKMRKKVWIAAGDI   76 (145)
T ss_pred             CCCCCCCCcc---ccccccc-cCccceeecccCCCCcEEEEEEEEcCCCEEEEEECCCCEEEEEEeccceeeEEecCCCE
Confidence            9999999999   9999999 999999999999999999999999999998         99999999999999999999


Q ss_pred             EEEEeeeCCCCeEEEEEEcCHhHHHHHHHcCCCCcccccccccc-------cccCCcceeeccCCCCCC
Q 035938           72 ILVGFRIYQDDKADVILINTPDEAKRLKNIGELPDGTRLNEGLL-------LILMMTPMLFQDNDIDKI  133 (133)
Q Consensus        72 VlV~~~~~~~~KgdIv~ry~~dqik~L~k~g~~P~~f~~~e~~~-------~~~~~~~~~f~~~did~i  133 (133)
                      |+|++|+|+++||+|+|||+++||++|+++|+||+.|.+++++.       +.++++.++|+++|++.|
T Consensus        77 VlVel~~~d~~KgdIv~ry~~dqvr~Lkk~G~~P~~f~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~  145 (145)
T PLN00208         77 ILVGLRDYQDDKADVILKYMPDEARLLKAYGELPENTRLNEGIAGDLDEEEDGEGDDYIEFEDEDIDKI  145 (145)
T ss_pred             EEEEccCCCCCEEEEEEEcCHHHHHHHHHcCCCCcceeeccccccccccccCcccCcceeecccccccC
Confidence            99999999999999999999999999999999999999988772       556666799999999875

>KOG3403 consensus Translation initiation factor 1A (eIF-1A) [Translation, ribosomal structure and biogenesis]

Probab=100.00  E-value=6.8e-43  Score=261.89  Aligned_cols=129  Identities=60%  Similarity=0.920  Sum_probs=120.7

Q ss_pred             CCCCCCCCCCccccccccCccCCcccceeeeccCCCeEEEEEEEecCCceE---------EEEEeccccceeeEeecCCE
Q 035938            1 MANNKGKGGKKFKNRKRGKNNEGEDQKRELIIKEEGQEYAEVLRMLGNGRL---------RLHWRHQAMHKRVWIAAGDI   71 (133)
Q Consensus         1 m~~~~~k~gk~~~n~~r~~~~~~~~~~~el~~p~e~e~~g~V~~~lGn~~~---------~la~IpGKmrkriWI~~GD~   71 (133)
                      ||+|||||||   |+|||++ +++...++|+++++||+||||++||||+++         |||||+||+||+|||.+||+
T Consensus         1 mpknkgkggk---nrRrGkn-end~~kReLvfkEegqeYaQv~kmLGnGr~e~~CfDGvkR~~hiRGklrkkVwi~~GDI   76 (145)
T KOG3403|consen    1 MPKNKGKGGK---NRRRGKN-ENDFEKRELVFKEEGQEYAQVIKMLGNGRLEASCFDGVKRLCHIRGKLRKKVWINQGDI   76 (145)
T ss_pred             CCCCCCCCcc---ccccCcc-cccchhhheeehhcchhHHHHHhhhcCCcEEEEEecchhhhhhhhccceeeEeecCCCE
Confidence            9999999999   9999999 999999999999999999999999999997         99999999999999999999


Q ss_pred             EEEEeeeCCCCeEEEEEEcCHhHHHHHHHcCCCCccccccccc-ccccC-Ccceee-----ccCCCCCC
Q 035938           72 ILVGFRIYQDDKADVILINTPDEAKRLKNIGELPDGTRLNEGL-LLILM-MTPMLF-----QDNDIDKI  133 (133)
Q Consensus        72 VlV~~~~~~~~KgdIv~ry~~dqik~L~k~g~~P~~f~~~e~~-~~~~~-~~~~~f-----~~~did~i  133 (133)
                      |||.+++||++||||+.+|+++|++.|+..|+||+.|.+|++. |+.++ ++++.|     +++|||+|
T Consensus        77 iLv~lRD~qd~kaDvilKY~~dEar~LK~~Gelpe~~k~Ne~~~~~~e~~d~~~~~~~~~~~~ed~d~~  145 (145)
T KOG3403|consen   77 ILVGLRDYQDDKADVILKYMPDEARILKAYGELPENAKINETDTFGVEDDDDDIDFDDIEDDDEDIDDI  145 (145)
T ss_pred             EEEeeecccccccceehhhChHHHHHHHhcCcCCcccccccccccCccCCccccccccccccccccccC
Confidence            9999999999999999999999999999999999999999998 66653 444555     67888875

>TIGR00523 eIF-1A eukaryotic/archaeal initiation factor 1A

Probab=100.00  E-value=2.1e-32  Score=197.18  Aligned_cols=88  Identities=34%  Similarity=0.561  Sum_probs=83.4

Q ss_pred             cCccCCcccceeeeccCCCeEEEEEEEecCCceE---------EEEEeccccceeeEeecCCEEEEEeeeCC-CCeEEEE
Q 035938           18 GKNNEGEDQKRELIIKEEGQEYAEVLRMLGNGRL---------RLHWRHQAMHKRVWIAAGDIILVGFRIYQ-DDKADVI   87 (133)
Q Consensus        18 ~~~~~~~~~~~el~~p~e~e~~g~V~~~lGn~~~---------~la~IpGKmrkriWI~~GD~VlV~~~~~~-~~KgdIv   87 (133)
                      +|+ +++....++|.++++|++|+|++++||++|         +|||||||||++|||++||+|+|+||+++ +.||+|+
T Consensus         2 ~~~-~~~~~~~~~p~~~e~e~~g~V~~~lG~~~~~V~~~dG~~~la~i~GK~Rk~iwI~~GD~VlVsp~d~~~~~kg~Iv   80 (99)
T TIGR00523         2 GQQ-QEQQIRVRLPRKEEGEILGVIEQMLGAGRVKVRCLDGKTRLGRIPGKLKKRIWIREGDVVIVKPWEFQGDDKCDIV   80 (99)
T ss_pred             CcC-ccCcceeeCCCCCCCEEEEEEEEEcCCCEEEEEeCCCCEEEEEEchhhcccEEecCCCEEEEEEccCCCCccEEEE
Confidence            555 778889999999999999999999999998         99999999999999999999999999998 7899999


Q ss_pred             EEcCHhHHHHHHHcCCCCc
Q 035938           88 LINTPDEAKRLKNIGELPD  106 (133)
Q Consensus        88 ~ry~~dqik~L~k~g~~P~  106 (133)
                      |||+++||++|+++|+||+
T Consensus        81 ~r~~~~qv~~L~~~g~~p~   99 (99)
T TIGR00523        81 WRYTKTQVEWLKRKGYLKE   99 (99)
T ss_pred             EEcCHHHHHHHHHcCCCCC
Confidence            9999999999999999995

Recommended nomenclature: eIF-1A for eukaryotes, aIF-1A for Archaea. Also called eIF-4C

>PRK04012 translation initiation factor IF-1A; Provisional

Probab=99.98  E-value=4.2e-32  Score=195.97  Aligned_cols=85  Identities=33%  Similarity=0.547  Sum_probs=82.1

Q ss_pred             CCcccceeeeccCCCeEEEEEEEecCCceE---------EEEEeccccceeeEeecCCEEEEEeeeCCCCeEEEEEEcCH
Q 035938           22 EGEDQKRELIIKEEGQEYAEVLRMLGNGRL---------RLHWRHQAMHKRVWIAAGDIILVGFRIYQDDKADVILINTP   92 (133)
Q Consensus        22 ~~~~~~~el~~p~e~e~~g~V~~~lGn~~~---------~la~IpGKmrkriWI~~GD~VlV~~~~~~~~KgdIv~ry~~   92 (133)
                      ..+....++++|+++|++|+|+++|||++|         +|||||||||++|||++||+|+|++|+|+++||+|+|||++
T Consensus         7 ~~~~~~~~~~~p~e~e~~g~V~~~lG~~~~~V~~~dG~~~la~i~GK~Rk~IwI~~GD~VlVe~~~~~~~kg~Iv~r~~~   86 (100)
T PRK04012          7 DEEVTRVRLPMPEEGEVFGVVEQMLGANRVRVRCMDGVERMGRIPGKMKKRMWIREGDVVIVAPWDFQDEKADIIWRYTK   86 (100)
T ss_pred             CCCceeEEccCCCCCEEEEEEEEEcCCCEEEEEeCCCCEEEEEEchhhcccEEecCCCEEEEEecccCCCEEEEEEEcCH
Confidence            567789999999999999999999999998         99999999999999999999999999999999999999999


Q ss_pred             hHHHHHHHcCCCCc
Q 035938           93 DEAKRLKNIGELPD  106 (133)
Q Consensus        93 dqik~L~k~g~~P~  106 (133)
                      +||++|+++|+||+
T Consensus        87 ~qv~~L~~~g~~~~  100 (100)
T PRK04012         87 PQVDWLRRKGYISE  100 (100)
T ss_pred             HHHHHHHHcCCCCC
Confidence            99999999999985

>smart00652 eIF1a eukaryotic translation initiation factor 1A

Probab=99.97  E-value=2.8e-31  Score=185.67  Aligned_cols=74  Identities=55%  Similarity=0.811  Sum_probs=72.3

Q ss_pred             ccCCCeEEEEEEEecCCceE---------EEEEeccccceeeEeecCCEEEEEeeeCCCCeEEEEEEcCHhHHHHHHHcC
Q 035938           32 IKEEGQEYAEVLRMLGNGRL---------RLHWRHQAMHKRVWIAAGDIILVGFRIYQDDKADVILINTPDEAKRLKNIG  102 (133)
Q Consensus        32 ~p~e~e~~g~V~~~lGn~~~---------~la~IpGKmrkriWI~~GD~VlV~~~~~~~~KgdIv~ry~~dqik~L~k~g  102 (133)
                      .|+++|++|+|++++||++|         +||+||||||++|||++||+|+|++|+|+++||+|+|||+++||++|+++|
T Consensus         1 ~p~e~q~~g~V~~~lG~~~~~V~~~dG~~~la~ipgK~Rk~iwI~~GD~VlVe~~~~~~~kg~Iv~r~~~~~vk~L~k~g   80 (83)
T smart00652        1 FKEDGQEIAQVVKMLGNGRLEVMCADGKERLARIPGKMRKKVWIRRGDIVLVDPWDFQDVKADIIYKYTKDEVRWLKKEG   80 (83)
T ss_pred             CCCCCcEEEEEEEEcCCCEEEEEECCCCEEEEEEchhhcccEEEcCCCEEEEEecCCCCCEEEEEEEeCHHHHHHHHHcC
Confidence            37899999999999999998         999999999999999999999999999999999999999999999999999


Q ss_pred             CCC
Q 035938          103 ELP  105 (133)
Q Consensus       103 ~~P  105 (133)
                      +||
T Consensus        81 ~wp   83 (83)
T smart00652       81 ELP   83 (83)
T ss_pred             CCC
Confidence            998

>cd04456 S1_IF1A_like S1_IF1A_like: Translation initiation factor IF1A-like, S1-like RNA-binding domain

Probab=99.96  E-value=8.5e-29  Score=171.50  Aligned_cols=68  Identities=40%  Similarity=0.574  Sum_probs=66.1

Q ss_pred             eEEEEEEEecCCceE---------EEEEeccccceeeEeecCCEEEEEeeeC-CCCeEEEEEEcCHhHHHHHHHcCCC
Q 035938           37 QEYAEVLRMLGNGRL---------RLHWRHQAMHKRVWIAAGDIILVGFRIY-QDDKADVILINTPDEAKRLKNIGEL  104 (133)
Q Consensus        37 e~~g~V~~~lGn~~~---------~la~IpGKmrkriWI~~GD~VlV~~~~~-~~~KgdIv~ry~~dqik~L~k~g~~  104 (133)
                      |+||+|++++|||+|         +|||||||||++|||++||+|+|+||+| +++||+|+|||+++||++|+++|+|
T Consensus         1 q~i~~V~~~lG~~~~~V~~~dg~~~l~~i~gK~Rk~iwI~~GD~VlV~~~~~~~~~kg~Iv~r~~~~~vk~L~k~g~w   78 (78)
T cd04456           1 QQIVRVLRMLGNNRHEVECADGQRRLVSIPGKLRKNIWIKRGDFLIVDPIEEGEDVKADIIFVYCKDHVRSLKKEGFL   78 (78)
T ss_pred             CeEEEEEEECCCCEEEEEECCCCEEEEEEchhhccCEEEcCCCEEEEEecccCCCceEEEEEEeCHHHHHHHHHcCcC
Confidence            689999999999998         9999999999999999999999999999 6889999999999999999999998

IF1A is also referred to as eIF1A in eukaryotes and aIF1A in archaea. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. IF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. This protein family is only found in eukaryotes and archaea.

>cd05793 S1_IF1A S1_IF1A: Translation initiation factor IF1A, also referred to as eIF1A in eukaryotes and aIF1A in archaea, S1-like RNA-binding domain

Probab=99.95  E-value=1.9e-28  Score=169.34  Aligned_cols=68  Identities=57%  Similarity=0.866  Sum_probs=66.1

Q ss_pred             eEEEEEEEecCCceE---------EEEEeccccceeeEeecCCEEEEEeeeCCCCeEEEEEEcCHhHHHHHHHcCCC
Q 035938           37 QEYAEVLRMLGNGRL---------RLHWRHQAMHKRVWIAAGDIILVGFRIYQDDKADVILINTPDEAKRLKNIGEL  104 (133)
Q Consensus        37 e~~g~V~~~lGn~~~---------~la~IpGKmrkriWI~~GD~VlV~~~~~~~~KgdIv~ry~~dqik~L~k~g~~  104 (133)
                      |++|+|++++||++|         +||+||||||++|||++||+|+|++|||+++||+|+|||+++||++|+++|+|
T Consensus         1 e~~g~V~~~~g~~~~~V~~~~g~~~la~i~gK~rk~iwI~~GD~V~Ve~~~~d~~kg~Iv~r~~~~~v~~L~~~g~i   77 (77)
T cd05793           1 EEYGQVEKMLGNGRLEVRCFDGKKRLCRIRGKMRKRVWINEGDIVLVAPWDFQDDKADIIYKYTPDEVRWLKRKGEL   77 (77)
T ss_pred             CEEEEEEEEcCCCEEEEEECCCCEEEEEEchhhcccEEEcCCCEEEEEeccccCCEEEEEEEcCHHHHHHHHHcCcC
Confidence            689999999999998         99999999999999999999999999999999999999999999999999975

S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins. IF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors. This protein family is only found in eukaryotes and archaea.

>cd05792 S1_eIF1AD_like S1_eIF1AD_like: eukaryotic translation initiation factor 1A domain containing protein (eIF1AD)-like, S1-like RNA-binding domain

Probab=99.95  E-value=1.2e-27  Score=166.32  Aligned_cols=68  Identities=32%  Similarity=0.362  Sum_probs=65.9

Q ss_pred             eEEEEEEEecCCceE---------EEEEeccccceeeEeecCCEEEEEeeeCCC-CeEEEEEEcCHhHHHHHHHcCCC
Q 035938           37 QEYAEVLRMLGNGRL---------RLHWRHQAMHKRVWIAAGDIILVGFRIYQD-DKADVILINTPDEAKRLKNIGEL  104 (133)
Q Consensus        37 e~~g~V~~~lGn~~~---------~la~IpGKmrkriWI~~GD~VlV~~~~~~~-~KgdIv~ry~~dqik~L~k~g~~  104 (133)
                      |.+|+|++++|||++         +||+||||||+++||++||||||+||++++ .||+|+|+|+++||++|+++|+|
T Consensus         1 q~i~rV~~~~G~n~~~V~~~dG~~~l~~iP~KfRk~iWIkrGd~VlV~p~~~~~kvkgeIv~i~~~~qvk~L~k~g~W   78 (78)
T cd05792           1 QQIVRVLGSKGNNLHEVETPNGSRYLVSMPTKFRKNIWIKRGDFVLVEPIEEGDKVKAEIVKILTRDHVKYIKEEGLW   78 (78)
T ss_pred             CeEEEEEEcCCCcEEEEEcCCCCEEEEEechhhcccEEEEeCCEEEEEecccCCceEEEEEEEECHHHHHHHHHcCCC
Confidence            689999999999998         999999999999999999999999999996 59999999999999999999998

eIF1AD is also known as MGC11102 protein. Little is known about the function of eIF1AD. S1-like RNA-binding domains are found in a wide variety of RNA-associated proteins, including translation initiation factor IF1A (also referred to as eIF1A in eukaryotes). eIF1A is essential for translation initiation. eIF1A acts synergistically with eIF1 to mediate assembly of ribosomal initiation complexes at the initiation codon and maintain the accuracy of this process by recognizing and destabilizing aberrant preinitiation complexes from the mRNA. Without eIF1A and eIF1, 43S ribosomal preinitiation complexes can bind to the cap-proximal region, but are unable to reach the initiation codon. eIF1a also enhances the formation of 5'-terminal complexes in the presence of other translation initiation factors.

>COG0361 InfA Translation initiation factor 1 (IF-1) [Translation, ribosomal structure and biogenesis]

Probab=99.92  E-value=2.4e-25  Score=153.85  Aligned_cols=63  Identities=33%  Similarity=0.472  Sum_probs=60.1

Q ss_pred             ccCCCeEEEEEEEecCCceE---------EEEEeccccce-eeEeecCCEEEEEeeeCCCCeEEEEEEcCHhH
Q 035938           32 IKEEGQEYAEVLRMLGNGRL---------RLHWRHQAMHK-RVWIAAGDIILVGFRIYQDDKADVILINTPDE   94 (133)
Q Consensus        32 ~p~e~e~~g~V~~~lGn~~~---------~la~IpGKmrk-riWI~~GD~VlV~~~~~~~~KgdIv~ry~~dq   94 (133)
                      .|+++|++|+|+++|||++|         ++||||||||+ +|||.+||+|+|+|||||++||+|+|||+++|
T Consensus         3 ~~d~~e~~g~V~e~L~~~~f~v~~edg~~~~ahI~GKmr~~~i~I~~GD~V~Ve~~~~d~~kg~I~~Ry~~~~   75 (75)
T COG0361           3 KPDEIEMEGTVIEMLPNGRFRVELENGHERLAHISGKMRKNRIRILPGDVVLVELSPYDLTKGRIVYRYKKDE   75 (75)
T ss_pred             cccccEEEEEEEEecCCCEEEEEecCCcEEEEEccCcchheeEEeCCCCEEEEEecccccccccEEEEecCCC
Confidence            35789999999999999998         99999999999 99999999999999999999999999999875

>PF01176 eIF-1a: Translation initiation factor 1A / IF-1; InterPro: IPR006196 The S1 domain of around 70 amino acids, originally identified in ribosomal protein S1, is found in a large number of RNA-associated proteins

Probab=99.87  E-value=1.1e-22  Score=135.74  Aligned_cols=56  Identities=38%  Similarity=0.577  Sum_probs=50.3

Q ss_pred             CCCeEEEEEEEecCCceE---------EEEEeccccceeeEeecCCEEEEEeeeCCCCeEEEEEE
Q 035938           34 EEGQEYAEVLRMLGNGRL---------RLHWRHQAMHKRVWIAAGDIILVGFRIYQDDKADVILI   89 (133)
Q Consensus        34 ~e~e~~g~V~~~lGn~~~---------~la~IpGKmrkriWI~~GD~VlV~~~~~~~~KgdIv~r   89 (133)
                      +|+|++|+|++++||++|         ++|+||||||++|||++||+|+|++|+|+++||+|+||
T Consensus         1 ee~e~~~~V~~~lG~~~~~V~~~dg~~~l~~i~gK~r~~iwI~~GD~V~V~~~~~d~~kG~Ii~r   65 (65)
T PF01176_consen    1 EEGEVIGRVTEMLGNNLFEVECEDGEERLARIPGKFRKRIWIKRGDFVLVEPSPYDKVKGRIIYR   65 (65)
T ss_dssp             STTEEEEEEEEEESSSEEEEEETTSEEEEEEE-HHHHTCC---TTEEEEEEESTTCTTEEEEEEE
T ss_pred             CCcEEEEEEEEECCCCEEEEEeCCCCEEEEEeccceeeeEecCCCCEEEEEecccCCCeEEEEEC
Confidence            579999999999999998         99999999999999999999999999999999999997

It has been shown that S1 proteins bind RNA through their S1 domains with some degree of sequence specificity. This type of S1 domain is found in translation initiation factor 1. The solution structure of one S1 RNA-binding domain from Escherichia coli polynucleotide phosphorylase has been determined []. It displays some similarity with the cold shock domain (CSD) (IPR002059 from INTERPRO). Both the S1 and the CSD domain consist of an antiparallel beta barrel of the same topology with 5 beta strands. This fold is also shared by many other proteins of unrelated function and is known as the OB fold. However, the S1 and CSD fold can be distinguished from the other OB folds by the presence of a short 3(10) helix at the end of strand 3. This unique feature is likely to form a part of the DNA/RNA-binding site. This entry is specific for bacterial, chloroplastic and eukaryotic IF-1 type S1 domains.; GO: 0003723 RNA binding, 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1JT8_A 3I4O_A 1AH9_A 1ZO1_W 1D7Q_A 2OQK_A 2DGY_A 1HR0_W.

>KOG2925 consensus Predicted translation initiation factor related to eIF-1A [Translation, ribosomal structure and biogenesis]

Probab=99.85  E-value=2.2e-22  Score=155.10  Aligned_cols=87  Identities=22%  Similarity=0.262  Sum_probs=80.3

Q ss_pred             cccceeeeccCCCeEEEEEEEecCCceE---------EEEEeccccceeeEeecCCEEEEEeeeC---CC-CeEEEEEEc
Q 035938           24 EDQKRELIIKEEGQEYAEVLRMLGNGRL---------RLHWRHQAMHKRVWIAAGDIILVGFRIY---QD-DKADVILIN   90 (133)
Q Consensus        24 ~~~~~el~~p~e~e~~g~V~~~lGn~~~---------~la~IpGKmrkriWI~~GD~VlV~~~~~---~~-~KgdIv~ry   90 (133)
                      ..+..+...+++.|+||+|+++.|||+|         .|++||.|||+.|||++|+||+|.|+.+   +. .||.|.|++
T Consensus        10 q~v~de~~~le~~q~IaqVvqlrGsnlheV~danGq~~lvsmP~KfRksiWiRRg~FvvVdpiee~~~g~KVkgeI~yVl   89 (167)
T KOG2925|consen   10 QAVSDEDFTLEECQSIAQVVQLRGSNLHEVMDANGQNSLVSMPAKFRKSIWIRRGSFVVVDPIEEEKSGSKVKGEICYVL   89 (167)
T ss_pred             ccccCCCcchhhhhhHHHHHhcCCcchhhhhhcCCceeeeeCCHhhhhceEEeeCCEEEEccccccccCCccceEEEEEE
Confidence            3456678889999999999999999998         9999999999999999999999999998   43 399999999


Q ss_pred             CHhHHHHHHHcCCCCccccc
Q 035938           91 TPDEAKRLKNIGELPDGTRL  110 (133)
Q Consensus        91 ~~dqik~L~k~g~~P~~f~~  110 (133)
                      ..+|++.|++.|+||+.|..
T Consensus        90 ~~d~vr~lqk~g~WPe~F~d  109 (167)
T KOG2925|consen   90 FFDQVRLLQKSGEWPEIFKD  109 (167)
T ss_pred             ccHHHHHHHHcCCcchhhhh
Confidence            99999999999999999965

>TIGR00008 infA translation initiation factor IF-1

Probab=99.84  E-value=1e-20  Score=128.63  Aligned_cols=54  Identities=17%  Similarity=0.143  Sum_probs=51.6

Q ss_pred             CeEEEEEEEecCCceE---------EEEEeccccce-eeEeecCCEEEEEeeeCCCCeEEEEEE
Q 035938           36 GQEYAEVLRMLGNGRL---------RLHWRHQAMHK-RVWIAAGDIILVGFRIYQDDKADVILI   89 (133)
Q Consensus        36 ~e~~g~V~~~lGn~~~---------~la~IpGKmrk-riWI~~GD~VlV~~~~~~~~KgdIv~r   89 (133)
                      -++.|+|+++|||++|         ++||||||||+ +|||.+||.|+|++||||++||+|+||
T Consensus         5 ie~~G~V~e~L~~~~f~V~l~ng~~vla~i~GKmr~~rI~I~~GD~V~Ve~spyd~tkgrIi~R   68 (68)
T TIGR00008         5 IEMEGKVTESLPNAMFRVELENGHEVLAHISGKIRMHYIRILPGDKVKVELSPYDLTRGRITYR   68 (68)
T ss_pred             EEEEEEEEEECCCCEEEEEECCCCEEEEEecCcchhccEEECCCCEEEEEECcccCCcEeEEeC
Confidence            3789999999999998         99999999997 999999999999999999999999997

This family consists of translation initiation factor IF-1 as found in bacteria and chloroplasts. This protein, about 70 residues in length, consists largely of an S1 RNA binding domain (pfam00575).

>PRK12442 translation initiation factor IF-1; Reviewed

Probab=99.82  E-value=4.3e-20  Score=130.78  Aligned_cols=57  Identities=21%  Similarity=0.212  Sum_probs=54.3

Q ss_pred             CeEEEEEEEecCCceE---------EEEEeccccce-eeEeecCCEEEEEeeeCCCCeEEEEEEcCH
Q 035938           36 GQEYAEVLRMLGNGRL---------RLHWRHQAMHK-RVWIAAGDIILVGFRIYQDDKADVILINTP   92 (133)
Q Consensus        36 ~e~~g~V~~~lGn~~~---------~la~IpGKmrk-riWI~~GD~VlV~~~~~~~~KgdIv~ry~~   92 (133)
                      -++.|+|+++|||+.|         +||||+||||+ +|||.+||.|+|++||||++||+|+|||.+
T Consensus         7 ie~~G~V~e~Lp~~~frV~LenG~~vla~isGKmR~~rIrIl~GD~V~VE~spYDltkGRIiyR~~~   73 (87)
T PRK12442          7 IELDGIVDEVLPDSRFRVTLENGVEVGAYASGRMRKHRIRILAGDRVTLELSPYDLTKGRINFRHKD   73 (87)
T ss_pred             EEEEEEEEEECCCCEEEEEeCCCCEEEEEeccceeeeeEEecCCCEEEEEECcccCCceeEEEEecC
Confidence            4789999999999988         99999999999 999999999999999999999999999973

>CHL00010 infA translation initiation factor 1

Probab=99.58  E-value=5.5e-15  Score=102.04  Aligned_cols=57  Identities=21%  Similarity=0.240  Sum_probs=52.2

Q ss_pred             eEEEEEEEecCCceE---------EEEEeccccce-eeEeecCCEEEEEeeeCCCCeEEEEEEcCHh
Q 035938           37 QEYAEVLRMLGNGRL---------RLHWRHQAMHK-RVWIAAGDIILVGFRIYQDDKADVILINTPD   93 (133)
Q Consensus        37 e~~g~V~~~lGn~~~---------~la~IpGKmrk-riWI~~GD~VlV~~~~~~~~KgdIv~ry~~d   93 (133)
                      ++.|+|++.+|++.+         ++|+++||||+ ++|+..||+|.|+||++++++|+|||||...
T Consensus         8 ~~~G~Vik~lg~~~y~V~~~~g~~~~c~~rGklr~~~i~~~vGD~V~ve~~~~~~~~g~Ii~r~~~~   74 (78)
T CHL00010          8 EMEGLVTESLPNGMFRVRLDNGCQVLGYISGKIRRNSIRILPGDRVKVELSPYDLTKGRIIYRLRNK   74 (78)
T ss_pred             EEEEEEEEEcCCCEEEEEeCCCCEEEEEeccceecCCcccCCCCEEEEEEcccCCCeEEEEEEecCC
Confidence            478999999987766         78999999998 7999999999999999999999999999764

>PRK00276 infA translation initiation factor IF-1; Validated

Probab=99.57  E-value=1.2e-14  Score=98.68  Aligned_cols=55  Identities=22%  Similarity=0.238  Sum_probs=50.5

Q ss_pred             eEEEEEEEecCCceE---------EEEEeccccce-eeEeecCCEEEEEeeeCCCCeEEEEEEcC
Q 035938           37 QEYAEVLRMLGNGRL---------RLHWRHQAMHK-RVWIAAGDIILVGFRIYQDDKADVILINT   91 (133)
Q Consensus        37 e~~g~V~~~lGn~~~---------~la~IpGKmrk-riWI~~GD~VlV~~~~~~~~KgdIv~ry~   91 (133)
                      ++.|+|+++++++.+         ++|+++|+||+ ++|+..||+|+|++|++++++|+|||||.
T Consensus         8 ~~~G~Vi~~~~~~~y~V~~~~g~~~~c~~~Gklr~~~i~i~vGD~V~ve~~~~~~~~g~Iv~r~~   72 (72)
T PRK00276          8 EMEGTVVEALPNAMFRVELENGHEVLAHISGKMRKNYIRILPGDKVTVELSPYDLTKGRITYRHK   72 (72)
T ss_pred             EEEEEEEEEcCCCEEEEEeCCCCEEEEEEccceeeCCcccCCCCEEEEEEcccCCCeEEEEEEeC
Confidence            678999999988655         78999999996 89999999999999999999999999984

>cd04451 S1_IF1 S1_IF1: Translation Initiation Factor IF1, S1-like RNA-binding domain

Probab=99.17  E-value=1.4e-10  Score=76.27  Aligned_cols=53  Identities=21%  Similarity=0.195  Sum_probs=46.3

Q ss_pred             eEEEEEEEecCCceE---------EEEEeccccce-eeEeecCCEEEEEeeeCCCCeEEEEEE
Q 035938           37 QEYAEVLRMLGNGRL---------RLHWRHQAMHK-RVWIAAGDIILVGFRIYQDDKADVILI   89 (133)
Q Consensus        37 e~~g~V~~~lGn~~~---------~la~IpGKmrk-riWI~~GD~VlV~~~~~~~~KgdIv~r   89 (133)
                      ++.|+|++.+||+.+         ++|+++|+||+ ++|+..||+|+++++++++++|.||||
T Consensus         2 ~~~G~Vi~~~~g~~~~V~~~~g~~~~c~~rGklr~~~~~~~vGD~V~~~~~~~~~~~g~I~~~   64 (64)
T cd04451           2 EMEGVVTEALPNAMFRVELENGHEVLAHISGKMRMNYIRILPGDRVKVELSPYDLTKGRIVYR   64 (64)
T ss_pred             eEEEEEEEEeCCCEEEEEeCCCCEEEEEECceeecCCcccCCCCEEEEEEeecCCCEEEEEEC
Confidence            356888888875444         88999999996 899999999999999999889999996

IF1 contains an S1-like RNA-binding domain, which is found in a wide variety of RNA-associated proteins. Translation initiation includes a number of interrelated steps preceding the formation of the first peptide bond. In Escherichia coli, the initiation mechanism requires, in addition to mRNA, fMet-tRNA, and ribosomal subunits, the presence of three additional proteins (initiation factors IF1, IF2, and IF3) and at least one GTP molecule. The three initiation factors influence both the kinetics and the stability of ternary complex formation. IF1 is the smallest of the three factors. IF1 enhances the rate of 70S ribosome subunit association and dissociation and the interaction of 30S ribosomal subunit with IF2 and IF3. It stimulates 30S complex formation. In addition, by binding to the A-site of the 30S ribosomal subunit, IF1 may contribute to the fidelity of the selection of the initiation site of th

>cd04466 S1_YloQ_GTPase S1_YloQ_GTPase: YloQ GTase family (also known as YjeQ and CpgA), S1-like RNA-binding domain

Probab=96.97  E-value=0.0031  Score=40.66  Aligned_cols=40  Identities=15%  Similarity=-0.002  Sum_probs=30.8

Q ss_pred             eEEEEEeccccce-eeEeecCCEEEEEeeeCCCCeEEEEEEcC
Q 035938           50 RLRLHWRHQAMHK-RVWIAAGDIILVGFRIYQDDKADVILINT   91 (133)
Q Consensus        50 ~~~la~IpGKmrk-riWI~~GD~VlV~~~~~~~~KgdIv~ry~   91 (133)
                      ..+.|.++|++++ ..++..||+|++++++  ...+-|+.++.
T Consensus        21 ~~~~~~~~~~~~~~~~~~~VGD~V~~~~~~--~~~~~I~~vl~   61 (68)
T cd04466          21 KIYECRLRGKFRKDKNPPAVGDRVEFEPED--DGEGVIEEILP   61 (68)
T ss_pred             eEEEEEEccccccCCCCCCCCcEEEEEECC--CCcEEEEEEec
Confidence            4489999999985 6889999999998754  34566766553

Proteins in the YloQ GTase family bind the ribosome and have GTPase activity. The precise role of this family is unknown. The protein structure is composed of three domains: an N-terminal S1 domain, a central GTPase domain, and a C-terminal zinc finger domain. This N-terminal S1 domain binds ssRNA. The central GTPase domain contains nucleotide-binding signature motifs: G1 (walker A), G3 (walker B) and G4 motifs. Experiments show that the bacterial YloQ and YjeQ proteins have low intrinsic GTPase activity. The C-terminal zinc-finger domain has structural similarity to a portion of the DNA-repair protein Rad51. This suggests a possible role for this GTPase as a regulator of translation, perhaps as a translation initiation factor. This family is classified based on the N-terminal S1 domain.

>PRK12289 GTPase RsgA; Reviewed

Probab=92.36  E-value=0.38  Score=41.33  Aligned_cols=37  Identities=22%  Similarity=0.285  Sum_probs=27.1

Q ss_pred             EEEEEeccccce-eeEeecCCEEEEEeeeCCCCeEEEE
Q 035938           51 LRLHWRHQAMHK-RVWIAAGDIILVGFRIYQDDKADVI   87 (133)
Q Consensus        51 ~~la~IpGKmrk-riWI~~GD~VlV~~~~~~~~KgdIv   87 (133)
                      ..+|..+|++++ ..-+..||+|++++.++.+..|-|.
T Consensus        36 ~~~~~~r~~lk~~~~~~~vGD~V~~~~~~~~~~~~~I~   73 (352)
T PRK12289         36 LLLCTRRTRLKKIGQQVMVGDRVIVEEPDWQGQRGAIA   73 (352)
T ss_pred             EEEEEcccccccCCCCcccCCEEEEeecCCCCCceEEE
Confidence            467999999986 4458899999999766544555443

>PRK00098 GTPase RsgA; Reviewed

Probab=92.27  E-value=0.44  Score=39.44  Aligned_cols=28  Identities=14%  Similarity=0.036  Sum_probs=22.7

Q ss_pred             eEEEEEeccccce-eeEeecCCEEEEEee
Q 035938           50 RLRLHWRHQAMHK-RVWIAAGDIILVGFR   77 (133)
Q Consensus        50 ~~~la~IpGKmrk-riWI~~GD~VlV~~~   77 (133)
                      ..+.|.++|++++ ..-+..||+|+|++.
T Consensus        21 ~~~~~~~~g~~~~~~~~~~vGD~V~~~~~   49 (298)
T PRK00098         21 QVYQCRARGKFRKKTNTPAVGDRVEFSAE   49 (298)
T ss_pred             CEEEEEeccccccCCCCcCCCCEEEEEEC
Confidence            3488999999985 556788999999863

>cd01854 YjeQ_engC YjeQ/EngC

Probab=92.14  E-value=0.35  Score=39.81  Aligned_cols=40  Identities=15%  Similarity=0.078  Sum_probs=28.8

Q ss_pred             ceEEEEEeccccce-eeEeecCCEEEEEeeeCCCCeEEEEEEc
Q 035938           49 GRLRLHWRHQAMHK-RVWIAAGDIILVGFRIYQDDKADVILIN   90 (133)
Q Consensus        49 ~~~~la~IpGKmrk-riWI~~GD~VlV~~~~~~~~KgdIv~ry   90 (133)
                      +..+.|.++|++++ +.-+..||+|++++.+  +..|.|..++
T Consensus        17 ~~~~~~~~~g~~~~~~~~~~vGD~V~~~~~~--~~~~~i~~i~   57 (287)
T cd01854          17 GGELRCRARGKLRKKGIKPVVGDWVEVEPDD--DGEGVIVRVL   57 (287)
T ss_pred             CeEEEEEeccccccCCCCccCCCEEEEEecC--CCcEEEEEEE
Confidence            44589999999986 3558899999998654  3345554444

YjeQ (YloQ in Bacillus subtilis) represents a protein family whose members are broadly conserved in bacteria and have been shown to be essential to the growth of E. coli and B. subtilis. Proteins of the YjeQ family contain all sequence motifs typical of the vast class of P-loop-containing GTPases, but show a circular permutation, with a G4-G1-G3 pattern of motifs as opposed to the regular G1-G3-G4 pattern seen in most GTPases. All YjeQ family proteins display a unique domain architecture, which includes an N-terminal OB-fold RNA-binding domain, the central permuted GTPase domain, and a zinc knuckle-like C-terminal cysteine domain. This domain architecture suggests a role for YjeQ as a regulator of translation.

>PRK12288 GTPase RsgA; Reviewed

Probab=88.31  E-value=1.5  Score=37.46  Aligned_cols=50  Identities=10%  Similarity=0.002  Sum_probs=35.1

Q ss_pred             EEEEEEEecCCceE--------EEEEeccccceeeEeecCCEEEEEeeeCCC--CeEEEEEEc
Q 035938           38 EYAEVLRMLGNGRL--------RLHWRHQAMHKRVWIAAGDIILVGFRIYQD--DKADVILIN   90 (133)
Q Consensus        38 ~~g~V~~~lGn~~~--------~la~IpGKmrkriWI~~GD~VlV~~~~~~~--~KgdIv~ry   90 (133)
                      ..|+|+...|+...        +.|.++|+++.   +..||+|++++.+.+.  ..|-|..++
T Consensus        40 ~~g~Vi~~~~~~~~v~~~~g~~~~~~~~g~~~~---~~vGD~V~~~~~~~~~~~~~~~I~~il   99 (347)
T PRK12288         40 QEGIVISRFGQHADVEAADGEVHRCNIRRTIRS---LVTGDRVVWRPGKEALEGVSGVVEAVH   99 (347)
T ss_pred             cceEEEEEECCEEEEEeCCCcEEEEEecccCCC---CCCCcEEEEEeCCCcccccceEEEEEe
Confidence            57888888876443        68999999974   7899999998543221  136565554

>PRK01889 GTPase RsgA; Reviewed

Probab=85.94  E-value=1.9  Score=36.75  Aligned_cols=52  Identities=19%  Similarity=0.157  Sum_probs=35.9

Q ss_pred             CeEEEEEEEecCCceE-------EEEEeccccce-----eeEeecCCEEEEEeeeCCCCeEEEEEEcC
Q 035938           36 GQEYAEVLRMLGNGRL-------RLHWRHQAMHK-----RVWIAAGDIILVGFRIYQDDKADVILINT   91 (133)
Q Consensus        36 ~e~~g~V~~~lGn~~~-------~la~IpGKmrk-----riWI~~GD~VlV~~~~~~~~KgdIv~ry~   91 (133)
                      +-..|+|+...|+...       +.|.++|+++.     .--...||+|++++    +..|-|..+|.
T Consensus        27 ~~~~g~v~~~~~~~~~v~~~~~~~~~~~~gk~~~~~~~~~~~~~vGD~V~~~~----~~~g~I~~i~p   90 (356)
T PRK01889         27 GLEPGRVVEEHRSGYVVATEEGEVRAEVSGKWRHEAFPPGDRPAVGDWVLLDN----EKKARIVRLLP   90 (356)
T ss_pred             CCccEEEEEEECCEEEEEECCcEEEEEecchhhccccccCCCCccCcEEEEec----CCceEEEEEEC
Confidence            3456888888876443       77999999984     13367899999985    23455555443

>cd00164 S1_like S1_like: Ribosomal protein S1-like RNA-binding domain

Probab=81.02  E-value=6.2  Score=23.45  Aligned_cols=25  Identities=16%  Similarity=0.121  Sum_probs=19.4

Q ss_pred             eeEeecCCEEEEEeeeCCCCeEEEE
Q 035938           63 RVWIAAGDIILVGFRIYQDDKADVI   87 (133)
Q Consensus        63 riWI~~GD~VlV~~~~~~~~KgdIv   87 (133)
                      +-+++.||.|.|.....+..++.|.
T Consensus        39 ~~~~~~G~~v~~~v~~~d~~~~~i~   63 (65)
T cd00164          39 SEVFKVGDEVEVKVLEVDPEKGRIS   63 (65)
T ss_pred             hhEeCCCCEEEEEEEEEcCCcCEEe
Confidence            4578999999999988776555553

Found in a wide variety of RNA-associated proteins. Originally identified in S1 ribosomal protein. This superfamily also contains the Cold Shock Domain (CSD), which is a homolog of the S1 domain. Both domains are members of the Oligonucleotide/oligosaccharide Binding (OB) fold.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	133
1d7q_A	143	Human Translation Initiation Factor Eif1a Length =		2e-21
2oqk_A	117	Crystal Structure Of Putative Cryptosporidium Parvu		9e-21

>pdb|1D7Q|A Chain A, Human Translation Initiation Factor Eif1a Length = 143

Iteration: 1
 Score = 97.4 bits (241), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 52/96 (54%), Positives = 65/96 (67%), Gaps = 9/96 (9%)
Query: 26  QKRELIIKEEGQEYAEVLRMLGNGRL---------RLHWRHQAMHKRVWIAAGDIILVGF 76
           +KREL+ KE+GQEYA+V++MLGNGRL         RL      + K+VWI   DIILVG 
Sbjct: 21  EKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDIILVGL 80
Query: 77  RIYQDDKADVILINTPDEAKRLKNIGELPDGTRLNE 112
           R YQD+KADVIL    DEA+ LK  GELP+  ++NE
Sbjct: 81  RDYQDNKADVILKYNADEARSLKAYGELPEHAKINE 116

>pdb|2OQK|A Chain A, Crystal Structure Of Putative Cryptosporidium Parvum Translation Initiation Factor Eif-1a Length = 117

Iteration: 1
 Score = 95.1 bits (235), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 49/95 (51%), Positives = 62/95 (65%), Gaps = 9/95 (9%)
Query: 27  KRELIIKEEGQEYAEVLRMLGNGRL---------RLHWRHQAMHKRVWIAAGDIILVGFR 77
           KREL+ KEEGQEY +V R LGNGRL         RL        K+VW+  GDI+LV  R
Sbjct: 23  KRELVFKEEGQEYGQVQRXLGNGRLDAYCFDGQKRLCHIRGKXRKKVWVNPGDIVLVSLR 82
Query: 78  IYQDDKADVILINTPDEAKRLKNIGELPDGTRLNE 112
            +QD K D+IL  TPDEA+ LK+ GE+P+ T++NE
Sbjct: 83  DFQDSKGDIILKYTPDEARALKSKGEIPETTKINE 117

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	133
1d7q_A	143	Translation initiation factor 1A; OB-fold, beta-ba	1e-24
2oqk_A	117	Putative translation initiation factor EIF-1A; mal	2e-24
1jt8_A	102	EIF-1A, probable translation initiation factor 1A;	3e-20
2dgy_A	111	MGC11102 protein; EIF-1A, structural genomics, NPP	3e-18

>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5 Length = 143

 Score = 90.8 bits (225), Expect = 1e-24
 Identities = 65/118 (55%), Positives = 79/118 (66%), Gaps = 13/118 (11%)

Query: 4   NKGKGGKKFKNRKRGKNNEGEDQKRELIIKEEGQEYAEVLRMLGNGRLRLHWRHQ----- 58
           NKGKGGK   NR+RGKN E E +KREL+ KE+GQEYA+V++MLGNGRL            
Sbjct: 3   NKGKGGK---NRRRGKN-ENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLC 58

Query: 59  ----AMHKRVWIAAGDIILVGFRIYQDDKADVILINTPDEAKRLKNIGELPDGTRLNE 112
                + K+VWI   DIILVG R YQD+KADVIL    DEA+ LK  GELP+  ++NE
Sbjct: 59  HIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINE 116

>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II} Length = 117

 Score = 89.7 bits (222), Expect = 2e-24
 Identities = 64/121 (52%), Positives = 80/121 (66%), Gaps = 13/121 (10%)

Query: 1   MANNKGKGGKKFKNRKRGKNNEGEDQKRELIIKEEGQEYAEVLRMLGNGRLRLHWRHQ-- 58
           M  NKGKGGK   NR+RGKN+  E  KREL+ KEEGQEY +V RMLGNGRL  +      
Sbjct: 1   MPKNKGKGGK---NRRRGKNDS-EGDKRELVFKEEGQEYGQVQRMLGNGRLDAYCFDGQK 56

Query: 59  -------AMHKRVWIAAGDIILVGFRIYQDDKADVILINTPDEAKRLKNIGELPDGTRLN 111
                   M K+VW+  GDI+LV  R +QD K D+IL  TPDEA+ LK+ GE+P+ T++N
Sbjct: 57  RLCHIRGKMRKKVWVNPGDIVLVSLRDFQDSKGDIILKYTPDEARALKSKGEIPETTKIN 116

Query: 112 E 112
           E
Sbjct: 117 E 117

>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5 Length = 102

 Score = 78.5 bits (193), Expect = 3e-20
 Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 10/99 (10%)

Query: 18  GKNNEGEDQKRELIIKEEGQEYAEVLRMLGNGRL---------RLHWRHQAMHKRVWIAA 68
            +  + +  +  +  KEE +    + +MLG  R+         RL      +  R+W+  
Sbjct: 2   AEQQQEQQIRVRIPRKEENEILGIIEQMLGASRVRVRCLDGKTRLGRIPGRLKNRIWVRE 61

Query: 69  GDIILVGFRIYQ-DDKADVILINTPDEAKRLKNIGELPD 106
           GD+++V     Q D K D+I   T  + + LK  G L +
Sbjct: 62  GDVVIVKPWEVQGDQKCDIIWRYTKTQVEWLKRKGYLDE 100

>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 111

 Score = 73.4 bits (180), Expect = 3e-18
 Identities = 21/93 (22%), Positives = 33/93 (35%), Gaps = 10/93 (10%)

Query: 24  EDQKRELIIKEEGQEYAEVLRMLGNGRL---------RLHWRHQAMHKRVWIAAGDIILV 74
                E I+    Q+   VLR  GN             L        K +WI  GD ++V
Sbjct: 3   SGSSGEHIVPSNQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIV 62

Query: 75  G-FRIYQDDKADVILINTPDEAKRLKNIGELPD 106
                 +  KA++  +   D  + L+  G  P+
Sbjct: 63  DPIEEGEKVKAEISFVLCKDHVRSLQKEGFWPE 95

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	133
1d7q_A	143	Translation initiation factor 1A; OB-fold, beta-ba	100.0
2oqk_A	117	Putative translation initiation factor EIF-1A; mal	100.0
2dgy_A	111	MGC11102 protein; EIF-1A, structural genomics, NPP	100.0
1jt8_A	102	EIF-1A, probable translation initiation factor 1A;	99.97
3i4o_A	79	Translation initiation factor IF-1; cytoplasm, pro	99.79
1ah9_A	71	IF1, initiation factor 1; ribosome binding, protei	99.71
1hr0_W	71	Translation initiation factor; ribosomal subunit,	99.67
2yv5_A	302	YJEQ protein; hydrolase, GTPase, permutation, stru	92.81
2rcn_A	358	Probable GTPase ENGC; YJEQ, circularly permuted, G	92.01
1t9h_A	307	YLOQ, probable GTPase ENGC; N-terminal beta-barrel	91.64
2k52_A	80	Uncharacterized protein MJ1198; metal-binding, zin	89.49

>1d7q_A Translation initiation factor 1A; OB-fold, beta-barrel, RNA-binding protein, gene regulation; NMR {Homo sapiens} SCOP: b.40.4.5

Probab=100.00  E-value=1.3e-46  Score=285.30  Aligned_cols=128  Identities=57%  Similarity=0.882  Sum_probs=120.1

Q ss_pred             CCCCCCCCCccccccccCccCCcccceeeeccCCCeEEEEEEEecCCceE---------EEEEeccccceeeEeecCCEE
Q 035938            2 ANNKGKGGKKFKNRKRGKNNEGEDQKRELIIKEEGQEYAEVLRMLGNGRL---------RLHWRHQAMHKRVWIAAGDII   72 (133)
Q Consensus         2 ~~~~~k~gk~~~n~~r~~~~~~~~~~~el~~p~e~e~~g~V~~~lGn~~~---------~la~IpGKmrkriWI~~GD~V   72 (133)
                      |+|||||||   |+||+|+ .++++.+++++|+++|++|+|+++|||++|         +|||||||||++|||++||+|
T Consensus         1 p~~~gkggk---~~~r~K~-~~~~~~~el~~p~ege~~g~V~e~lgn~~f~V~l~nG~~~La~I~GKmRk~IwI~~GD~V   76 (143)
T 1d7q_A            1 PKNKGKGGK---NRRRGKN-ENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDII   76 (143)
T ss_dssp             CCCCCSSSS---SSCCCCC-CSCCCCCCCCCCCTTEEEEEEEEECSSSEEEEEETTTEEEEEECCSGGGGSCCCCTTCEE
T ss_pred             CCCCCCCCc---ccccccc-cchhhhhcccCCCCCEEEEEEEEEcCCCEEEEEeCCCCEEEEEecccceeeEEecCCCEE
Confidence            899999999   9999998 887888999999999999999999999998         999999999999999999999


Q ss_pred             EEEeeeCCCCeEEEEEEcCHhHHHHHHHcCCCCccccccccc-ccccCCcceeec-----cCCCCCC
Q 035938           73 LVGFRIYQDDKADVILINTPDEAKRLKNIGELPDGTRLNEGL-LLILMMTPMLFQ-----DNDIDKI  133 (133)
Q Consensus        73 lV~~~~~~~~KgdIv~ry~~dqik~L~k~g~~P~~f~~~e~~-~~~~~~~~~~f~-----~~did~i  133 (133)
                      +|+||||+++||+|+|||+++|+++|+++|+||++|.+|+.+ |+++++++++|+     ++|||+|
T Consensus        77 lVe~~~yd~~KG~Ii~r~~~devk~L~k~g~wP~~f~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~  143 (143)
T 1d7q_A           77 LVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDEIQFDDIGDDDEDIDDI  143 (143)
T ss_dssp             EEECSSSSSSCCEEEEEECTTTHHHHHHHTSSCTTCCCCCCCSSSCCCCCCCCCCCSCSSCCSCSCC
T ss_pred             EEeeccCCCCeEEEEEEeCHHHHHHHHHcCCCChHHhhCccccccCCCCccceeccCccchhccccC
Confidence            999999999999999999999999999999999999999988 766677779992     2489987

>2oqk_A Putative translation initiation factor EIF-1A; malaria, eukaryotic initiation facto SGC, structural genomics; 1.80A {Cryptosporidium parvum iowa II}

Probab=100.00  E-value=8.1e-39  Score=234.53  Aligned_cols=108  Identities=61%  Similarity=1.014  Sum_probs=83.2

Q ss_pred             CCCCCCCCCCccccccccCccCCcccceeeeccCCCeEEEEEEEecCCceE---------EEEEeccccceeeEeecCCE
Q 035938            1 MANNKGKGGKKFKNRKRGKNNEGEDQKRELIIKEEGQEYAEVLRMLGNGRL---------RLHWRHQAMHKRVWIAAGDI   71 (133)
Q Consensus         1 m~~~~~k~gk~~~n~~r~~~~~~~~~~~el~~p~e~e~~g~V~~~lGn~~~---------~la~IpGKmrkriWI~~GD~   71 (133)
                      ||+|||||||   |++|+|+ .++++.+++++|+++|++|+|++++||++|         ++||||||||++|||.+||+
T Consensus         1 ~~~~~~~g~k---~~~r~k~-~~~~~~~~~~~~~~~e~~G~Vi~~lgn~~y~V~~~dG~~~l~~i~GK~Rk~I~i~~GD~   76 (117)
T 2oqk_A            1 MPKNKGKGGK---NRRRGKN-DSEGDKRELVFKEEGQEYGQVQRMLGNGRLDAYCFDGQKRLCHIRGKMRKKVWVNPGDI   76 (117)
T ss_dssp             -------------------------CCCCCCCCCTTEEEEEEEEEEETTEEEEEETTSCEEEEECCHHHHHHSCCCTTCE
T ss_pred             CCCCCCCCCC---ccccccc-ccchhhhhccCCCCCEEEEEEEEEcCCCEEEEEeCCCCEEEEEEcCceecCCcCCCCCE
Confidence            9999999999   9999998 777888999999999999999999999887         89999999999999999999


Q ss_pred             EEEEeeeCCCCeEEEEEEcCHhHHHHHHHcCCCCccccccc
Q 035938           72 ILVGFRIYQDDKADVILINTPDEAKRLKNIGELPDGTRLNE  112 (133)
Q Consensus        72 VlV~~~~~~~~KgdIv~ry~~dqik~L~k~g~~P~~f~~~e  112 (133)
                      |+|++|+|++++|+|+|+|.++|+++|+++|+||++|.+||
T Consensus        77 V~ve~~~~~~~kG~I~~~~~r~~~k~l~~~g~~p~~f~~~~  117 (117)
T 2oqk_A           77 VLVSLRDFQDSKGDIILKYTPDEARALKSKGEIPETTKINE  117 (117)
T ss_dssp             EEEEECTTCTTEEEEEEECCHHHHHHHHHTTSSCTTCCC--
T ss_pred             EEEEEEcCCCCeEEEEEEechHHHHHHHHcCCCCcccCccC
Confidence            99999999999999999999999999999999999999875

>2dgy_A MGC11102 protein; EIF-1A, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=100.00  E-value=1.8e-34  Score=210.58  Aligned_cols=91  Identities=23%  Similarity=0.278  Sum_probs=85.2

Q ss_pred             cccceeeeccCCCeEEEEEEEecCCceE---------EEEEeccccceeeEeecCCEEEEEeeeCC-CCeEEEEEEcCHh
Q 035938           24 EDQKRELIIKEEGQEYAEVLRMLGNGRL---------RLHWRHQAMHKRVWIAAGDIILVGFRIYQ-DDKADVILINTPD   93 (133)
Q Consensus        24 ~~~~~el~~p~e~e~~g~V~~~lGn~~~---------~la~IpGKmrkriWI~~GD~VlV~~~~~~-~~KgdIv~ry~~d   93 (133)
                      ..+.+++++|++||++|+|+++|||++|         +|||||||||++|||++||+|+|+||+|| ++||+|+|||+++
T Consensus         3 ~~~l~e~~~p~ege~~g~V~~~lgn~~f~V~l~nG~~~la~i~GK~Rk~IwI~~GD~VlVe~~~yd~~~kg~Iv~r~~~~   82 (111)
T 2dgy_A            3 SGSSGEHIVPSNQQQIVRVLRTPGNNLHEVETAQGQRFLVSMPSKYRKNIWIKRGDFLIVDPIEEGEKVKAEISFVLCKD   82 (111)
T ss_dssp             CCCCCSSCCCCSSCEEEEEEECCSSSEEEEECTTSCEEEEECCTTCCSCCCCCSSCEEEEEECSSCSSCCEEEEEECCHH
T ss_pred             hhhhccccCCCCCeEEEEEEEeCCCCEEEEEeCCCCEEEEEechhhcccEEEcCCCEEEEEecccCCcceEEEEEEeCHH
Confidence            3467889999999999999999999998         99999999999999999999999999999 8899999999999


Q ss_pred             HHHHHHHcCCCCccccccccc
Q 035938           94 EAKRLKNIGELPDGTRLNEGL  114 (133)
Q Consensus        94 qik~L~k~g~~P~~f~~~e~~  114 (133)
                      ||++|+++|+||++|..++..
T Consensus        83 qvk~L~k~g~wP~~F~~~~~~  103 (111)
T 2dgy_A           83 HVRSLQKEGFWPEAFSEVAEK  103 (111)
T ss_dssp             HHHHHHHHTCSCHHHHHHHTT
T ss_pred             HHHHHHHcCCCChHHhhcccc
Confidence            999999999999999764433

>1jt8_A EIF-1A, probable translation initiation factor 1A; beta barrel, translation factor; NMR {Methanocaldococcus jannaschii} SCOP: b.40.4.5

Probab=99.97  E-value=4e-32  Score=195.66  Aligned_cols=81  Identities=30%  Similarity=0.454  Sum_probs=77.3

Q ss_pred             ccceeeeccC--CCeEEEEEEEecCCceE---------EEEEeccccceeeEeecCCEEEEEeeeCC-CCeEEEEEEcCH
Q 035938           25 DQKRELIIKE--EGQEYAEVLRMLGNGRL---------RLHWRHQAMHKRVWIAAGDIILVGFRIYQ-DDKADVILINTP   92 (133)
Q Consensus        25 ~~~~el~~p~--e~e~~g~V~~~lGn~~~---------~la~IpGKmrkriWI~~GD~VlV~~~~~~-~~KgdIv~ry~~   92 (133)
                      +..+++++|+  ++|++|+|+++|||++|         +|||||||||++|||++||+|+|++|||| ++||+|+|||++
T Consensus         7 ~~~~~~~~P~~~e~e~~g~V~~~lgn~~~~V~l~nG~~~la~i~GKmRk~IwI~~GD~VlVe~~~yd~~~Kg~Iv~r~~~   86 (102)
T 1jt8_A            7 EQQIRVRIPRKEENEILGIIEQMLGASRVRVRCLDGKTRLGRIPGRLKNRIWVREGDVVIVKPWEVQGDQKCDIIWRYTK   86 (102)
T ss_dssp             CCCCCCCCSCCSSCCEEEEEECSSCSSEEEEEEETTEEEEEECCHHHHHHHCCCSCEEEEECCBCCTTSEEEEEEEESSC
T ss_pred             CcceecccCCCCCCEEEEEEEEEcCCCEEEEEECCCCEEEEEEcccceeeEEecCCCEEEEEeccCCCCceEEEEEEeCH
Confidence            4567788877  99999999999999998         99999999999999999999999999999 889999999999


Q ss_pred             hHHHHHHHcCCCC
Q 035938           93 DEAKRLKNIGELP  105 (133)
Q Consensus        93 dqik~L~k~g~~P  105 (133)
                      +|+++|+++|+||
T Consensus        87 de~~~L~k~g~~p   99 (102)
T 1jt8_A           87 TQVEWLKRKGYLD   99 (102)
T ss_dssp             SHHHHHHHHHHHH
T ss_pred             HHHHHHHHcCCCc
Confidence            9999999999999

>3i4o_A Translation initiation factor IF-1; cytoplasm, protein biosynthesis; 1.47A {Mycobacterium tuberculosis} SCOP: b.40.4.5

Probab=99.79  E-value=5.7e-20  Score=126.98  Aligned_cols=57  Identities=16%  Similarity=0.166  Sum_probs=54.0

Q ss_pred             CCeEEEEEEEecCCceE---------EEEEeccccce-eeEeecCCEEEEEeeeCCCCeEEEEEEcC
Q 035938           35 EGQEYAEVLRMLGNGRL---------RLHWRHQAMHK-RVWIAAGDIILVGFRIYQDDKADVILINT   91 (133)
Q Consensus        35 e~e~~g~V~~~lGn~~~---------~la~IpGKmrk-riWI~~GD~VlV~~~~~~~~KgdIv~ry~   91 (133)
                      -.|+.|+|+++|||+.|         ++|||+||||+ +|||.+||.|+|++||||++||+|+|||.
T Consensus        13 ~ie~~G~Vik~l~n~~f~V~l~nG~~~~c~i~GK~Rk~~I~Il~GD~V~ve~~~yd~~kgrIi~R~~   79 (79)
T 3i4o_A           13 AIEVEGRVVEPLPNAMFRIELENGHKVLAHISGKMRQHYIRILPEDRVVVELSPYDLSRGRIVYRYK   79 (79)
T ss_dssp             CSEEEEEEEEEETTTEEEEEETTSCEEEEEECHHHHHTTCCCCTTCEEEEEEETTEEEEEEEEEECC
T ss_pred             eEEEEEEEEEEcCCCEEEEEeCCCCEEEEEeCcceecCCccCCCCCEEEEEECccCCCcEEEEEEcC
Confidence            36899999999999887         99999999999 99999999999999999999999999984

>1ah9_A IF1, initiation factor 1; ribosome binding, protein-RNA interaction, OB fold; NMR {Escherichia coli} SCOP: b.40.4.5

Probab=99.71  E-value=4.5e-18  Score=113.93  Aligned_cols=56  Identities=21%  Similarity=0.220  Sum_probs=52.1

Q ss_pred             CeEEEEEEEecCCceE---------EEEEeccccce-eeEeecCCEEEEEeeeCCCCeEEEEEEcC
Q 035938           36 GQEYAEVLRMLGNGRL---------RLHWRHQAMHK-RVWIAAGDIILVGFRIYQDDKADVILINT   91 (133)
Q Consensus        36 ~e~~g~V~~~lGn~~~---------~la~IpGKmrk-riWI~~GD~VlV~~~~~~~~KgdIv~ry~   91 (133)
                      .++.|+|++++||++|         ++|++|||||+ .+||.+||+|+|++++|++++|+|+|||.
T Consensus         6 ~~~~G~Vi~~lg~~~y~V~~~~g~~~~~~i~Gk~Rk~~i~i~vGD~V~ve~~~~~~~kg~I~~r~~   71 (71)
T 1ah9_A            6 IEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR   71 (71)
T ss_dssp             EECCEEEEEECSSSEEEEEETTSCEEEEEECSSGGGTTCCCCTTCEECCEECSSCTTEEEECSCCC
T ss_pred             eEEEEEEEEEeCCcEEEEEECCCCEEEEEEcceEeccCccCCCCCEEEEEEecCCCCEEEEEEEEC
Confidence            4678999999998887         89999999998 59999999999999999999999999985

>1hr0_W Translation initiation factor; ribosomal subunit, ribosome, IF1; 3.20A {Escherichia coli} SCOP: b.40.4.5 PDB: 1zo1_W

Probab=99.67  E-value=2.1e-18  Score=115.83  Aligned_cols=55  Identities=18%  Similarity=0.247  Sum_probs=52.0

Q ss_pred             CeEEEEEEEecCCceE---------EEEEeccccce-eeEeecCCEEEEEeeeCCCCeEEEEEEc
Q 035938           36 GQEYAEVLRMLGNGRL---------RLHWRHQAMHK-RVWIAAGDIILVGFRIYQDDKADVILIN   90 (133)
Q Consensus        36 ~e~~g~V~~~lGn~~~---------~la~IpGKmrk-riWI~~GD~VlV~~~~~~~~KgdIv~ry   90 (133)
                      .++.|+|++++||++|         ++|++|||||+ ++||.+||+|+|+++||++++|+|+|||
T Consensus         7 ~~~~G~Vi~~lg~~~y~V~~~~g~~~~~~i~Gk~Rk~~i~i~~GD~V~ve~~~~~~~kg~I~~r~   71 (71)
T 1hr0_W            7 IRTEGVVTEALPNATFRVKLDSGPEILAYISGKMRMHYIRILPGDRVVVEITPYDPTRGRIVYRK   71 (71)
T ss_dssp             CCCEEECCCCCTTTBCCCEESSSCBCCCEECHHHHHTCCCCCTTCEEEEECCTTCTTCCEECSCC
T ss_pred             eEEEEEEEEEeCCcEEEEEECCCCEEEEEEcceEeccCcCCCCCCEEEEEEEcCCCCEEEEEEeC
Confidence            6789999999998876         89999999997 9999999999999999999999999997

>2yv5_A YJEQ protein; hydrolase, GTPase, permutation, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GDP; 1.90A {Aquifex aeolicus}

Probab=92.81  E-value=0.47  Score=37.70  Aligned_cols=40  Identities=15%  Similarity=-0.072  Sum_probs=31.1

Q ss_pred             EEEEEEEecCCce---------EEEEEeccccce-eeEeecCCEEEEEeee
Q 035938           38 EYAEVLRMLGNGR---------LRLHWRHQAMHK-RVWIAAGDIILVGFRI   78 (133)
Q Consensus        38 ~~g~V~~~lGn~~---------~~la~IpGKmrk-riWI~~GD~VlV~~~~   78 (133)
                      ..|+|++..++-.         .+.|+++|+||+ .. ...||.|.+++++
T Consensus         7 ~~g~v~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~-~~vGD~V~~~~~~   56 (302)
T 2yv5_A            7 KRGLVVDREAQMIGVYLFEDGKTYRGIPRGKVLKKTK-IYAGDYVWGEVVD   56 (302)
T ss_dssp             EEEEEEEEETTEEEEEETTTCCEEEEEECSSSTTSSC-CCBTCEEEEEEEE
T ss_pred             eeEEEEEeeCCeEEEEEecCCEEEEEEEcCCcccCCC-CcCceEEEEEEcc
Confidence            4566666666544         478999999997 45 8899999999876

>2rcn_A Probable GTPase ENGC; YJEQ, circularly permuted, GTP-binding, hydrolase, nucleotide-binding; HET: GDP; 2.25A {Salmonella typhimurium} PDB: 2ykr_W 4a2i_V

Probab=92.01  E-value=0.41  Score=39.86  Aligned_cols=52  Identities=12%  Similarity=0.012  Sum_probs=37.4

Q ss_pred             eEEEEEEEecCCceE--------EEEEeccccceeeEeecCCEEEEEeeeCCC----CeEEEEEEcC
Q 035938           37 QEYAEVLRMLGNGRL--------RLHWRHQAMHKRVWIAAGDIILVGFRIYQD----DKADVILINT   91 (133)
Q Consensus        37 e~~g~V~~~lGn~~~--------~la~IpGKmrkriWI~~GD~VlV~~~~~~~----~KgdIv~ry~   91 (133)
                      .+.|+|++..|+-..        +.|+++|+|+.   +..||+|.+++.+.+.    .+|.|+.++-
T Consensus        47 ~~~g~Vi~~~~~~~~v~~~~g~~~~~~~r~~~~~---~~vGD~V~~~~~~~~~~~~~~~~~I~~i~~  110 (358)
T 2rcn_A           47 PAEGIVISRFGMHADVESADGEVHRCNIRRTIRS---LVTGDRVVWRPGKAAAEGVNVKGIVEAVHE  110 (358)
T ss_dssp             CEEEEEEEEETTEEEEEETTSCEEEEEECTTCCC---CCBTCEEEEECBC-------CCEEEEEECC
T ss_pred             cceEEEEEEECCEEEEEeCCCcEEEEEecCCCCC---CCCCcEEEEEeCCCccccccccceEeEEeC
Confidence            368999998886443        68999999986   7899999998654221    1377776664

>1t9h_A YLOQ, probable GTPase ENGC; N-terminal beta-barrel domain with oligonucleotide binding fold, central GTP binding domain; 1.60A {Bacillus subtilis} SCOP: b.40.4.5 c.37.1.8

Probab=91.64  E-value=0.49  Score=38.45  Aligned_cols=40  Identities=13%  Similarity=0.157  Sum_probs=30.5

Q ss_pred             ceEEEEEeccccce-eeEeecCCEEEEEeeeCCCCeEEEEEEc
Q 035938           49 GRLRLHWRHQAMHK-RVWIAAGDIILVGFRIYQDDKADVILIN   90 (133)
Q Consensus        49 ~~~~la~IpGKmrk-riWI~~GD~VlV~~~~~~~~KgdIv~ry   90 (133)
                      +..+.|+++|+||+ ..-...||+|.+++.+  ...|.|..++
T Consensus        33 ~~~~~~~~rg~~~~~~~~~~vGD~V~~~~~~--~~~~~i~~i~   73 (307)
T 1t9h_A           33 DKVIQCRGRGIFRKNKITPLVGDYVVYQAEN--DKEGYLMEIK   73 (307)
T ss_dssp             CEEEEEESCSSCCSCCCCCCBTCEEEEECCT--TSCEEEEEEC
T ss_pred             CcEEEEEEcccccccCCCCCCCeEEEEEEcC--CCceEEEEEc
Confidence            34578999999997 5677899999998643  3467777665

>2k52_A Uncharacterized protein MJ1198; metal-binding, zinc, zinc-finger, structural genomics, PSI-2, protein structure initiative; NMR {Methanocaldococcus jannaschii}

Probab=89.49  E-value=0.89  Score=29.40  Aligned_cols=57  Identities=19%  Similarity=0.172  Sum_probs=41.3

Q ss_pred             CeEEEEEEEecCCceE--------EEEEeccccceee-EeecCCEEEEEeeeCCCCeEEEEEEcCH
Q 035938           36 GQEYAEVLRMLGNGRL--------RLHWRHQAMHKRV-WIAAGDIILVGFRIYQDDKADVILINTP   92 (133)
Q Consensus        36 ~e~~g~V~~~lGn~~~--------~la~IpGKmrkri-WI~~GD~VlV~~~~~~~~KgdIv~ry~~   92 (133)
                      ..+.|+|+.+...+.|        -|+|++.=...++ .++.||.|.|.....+..++.|...+.+
T Consensus         7 ~iv~G~V~~v~~~G~fV~l~~~~~Gllh~sel~~~~~~~~~~Gd~V~v~V~~vd~~~~~i~lsl~~   72 (80)
T 2k52_A            7 KFYKGVVTRIEKYGAFINLNEQVRGLLRPRDMISLRLENLNVGDEIIVQAIDVRPEKREIDFKYIP   72 (80)
T ss_dssp             CEEEEEEEEEETTEEEEEEETTEEEEECGGGCSSCCGGGCCTTCEEEEEEEEEETTTTEEEEEECS
T ss_pred             CEEEEEEEEEeCCEEEEEECCCCEEEEEHHHCCcccceeeCCCCEEEEEEEEEECCCCEEEEEEee
Confidence            4578999999888877        4445543222222 5889999999999988888888776643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	133
d1d7qa_	143	b.40.4.5 (A:) Translation initiation factor-1a, eI	2e-26
d1jt8a_	102	b.40.4.5 (A:) Archaeal initiation factor-1a, aIF1a	6e-19
d1ah9a_	71	b.40.4.5 (A:) Translational initiation factor 1, I	6e-07
d1hr0w_	71	b.40.4.5 (W:) Translational initiation factor 1, I	6e-07

>d1d7qa_ b.40.4.5 (A:) Translation initiation factor-1a, eIF1a {Human (Homo sapiens) [TaxId: 9606]} Length = 143

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Translation initiation factor-1a, eIF1a
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 94.5 bits (235), Expect = 2e-26
 Identities = 65/118 (55%), Positives = 79/118 (66%), Gaps = 13/118 (11%)

Query: 4   NKGKGGKKFKNRKRGKNNEGEDQKRELIIKEEGQEYAEVLRMLGNGRLRLHWRHQ----- 58
           NKGKGGK   NR+RGKN E E +KREL+ KE+GQEYA+V++MLGNGRL            
Sbjct: 3   NKGKGGK---NRRRGKN-ENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLC 58

Query: 59  ----AMHKRVWIAAGDIILVGFRIYQDDKADVILINTPDEAKRLKNIGELPDGTRLNE 112
                + K+VWI   DIILVG R YQD+KADVIL    DEA+ LK  GELP+  ++NE
Sbjct: 59  HIRGKLRKKVWINTSDIILVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINE 116

>d1jt8a_ b.40.4.5 (A:) Archaeal initiation factor-1a, aIF1a {Archaeon Methanococcus jannaschii [TaxId: 2190]} Length = 102

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Archaeal initiation factor-1a, aIF1a
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

 Score = 74.0 bits (182), Expect = 6e-19
 Identities = 23/99 (23%), Positives = 43/99 (43%), Gaps = 10/99 (10%)

Query: 18  GKNNEGEDQKRELIIKEEGQEYAEVLRMLGNGRLRLHWRHQ---------AMHKRVWIAA 68
            +  + +  +  +  KEE +    + +MLG  R+R+               +  R+W+  
Sbjct: 2   AEQQQEQQIRVRIPRKEENEILGIIEQMLGASRVRVRCLDGKTRLGRIPGRLKNRIWVRE 61

Query: 69  GDIILVGFRIYQ-DDKADVILINTPDEAKRLKNIGELPD 106
           GD+++V     Q D K D+I   T  + + LK  G L +
Sbjct: 62  GDVVIVKPWEVQGDQKCDIIWRYTKTQVEWLKRKGYLDE 100

>d1ah9a_ b.40.4.5 (A:) Translational initiation factor 1, IF1 {Escherichia coli [TaxId: 562]} Length = 71

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Translational initiation factor 1, IF1
species: Escherichia coli [TaxId: 562]

 Score = 42.0 bits (99), Expect = 6e-07
 Identities = 15/66 (22%), Positives = 22/66 (33%), Gaps = 11/66 (16%)

Query: 33 KEEGQEY-AEVLRMLGNGRLRL----------HWRHQAMHKRVWIAAGDIILVGFRIYQD 81
          KE+  E    VL  L N   R+          H   +     + I  GD + V    Y  
Sbjct: 2  KEDNIEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDL 61

Query: 82 DKADVI 87
           K  ++
Sbjct: 62 SKGRIV 67

>d1hr0w_ b.40.4.5 (W:) Translational initiation factor 1, IF1 {Escherichia coli [TaxId: 562]} Length = 71

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Translational initiation factor 1, IF1
species: Escherichia coli [TaxId: 562]

 Score = 41.9 bits (99), Expect = 6e-07
 Identities = 13/71 (18%), Positives = 24/71 (33%), Gaps = 14/71 (19%)

Query: 27 KRELIIKEEGQEYAEVLRMLGNGRLRL----------HWRHQAMHKRVWIAAGDIILVGF 76
          K +  I+ EG     V   L N   R+          +   +     + I  GD ++V  
Sbjct: 2  KEKDTIRTEGV----VTEALPNATFRVKLDSGPEILAYISGKMRMHYIRILPGDRVVVEI 57

Query: 77 RIYQDDKADVI 87
            Y   +  ++
Sbjct: 58 TPYDPTRGRIV 68

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	133
d1d7qa_	143	Translation initiation factor-1a, eIF1a {Human (Ho	100.0
d1jt8a_	102	Archaeal initiation factor-1a, aIF1a {Archaeon Met	99.96
d1ah9a_	71	Translational initiation factor 1, IF1 {Escherichi	99.83
d1hr0w_	71	Translational initiation factor 1, IF1 {Escherichi	99.76
d1u0la1	66	Probable GTPase EngC (YjeQ), N-terminal domain {Th	97.64
d1t9ha1	67	Probable GTPase EngC (YjeQ), N-terminal domain {Ba	97.62
d1g2914	71	Maltose transport protein MalK, C-terminal domain	81.91

>d1d7qa_ b.40.4.5 (A:) Translation initiation factor-1a, eIF1a {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Translation initiation factor-1a, eIF1a
species: Human (Homo sapiens) [TaxId: 9606]

Probab=100.00  E-value=1e-38  Score=239.00  Aligned_cols=128  Identities=57%  Similarity=0.882  Sum_probs=115.9

Q ss_pred             CCCCCCCCCccccccccCccCCcccceeeeccCCCeEEEEEEEecCCceE---------EEEEeccccceeeEeecCCEE
Q 035938            2 ANNKGKGGKKFKNRKRGKNNEGEDQKRELIIKEEGQEYAEVLRMLGNGRL---------RLHWRHQAMHKRVWIAAGDII   72 (133)
Q Consensus         2 ~~~~~k~gk~~~n~~r~~~~~~~~~~~el~~p~e~e~~g~V~~~lGn~~~---------~la~IpGKmrkriWI~~GD~V   72 (133)
                      |+|+|+|||   ++|++++ .+....++++.|+++|+||+|+++|||++|         +||+||||||+++||.+||+|
T Consensus         1 pKN~~~g~k---~kk~~k~-~~~~~~~~l~~~ee~e~ya~V~k~lG~~~~~V~~~dg~~rl~~irgk~r~r~~i~~Gd~V   76 (143)
T d1d7qa_           1 PKNKGKGGK---NRRRGKN-ENESEKRELVFKEDGQEYAQVIKMLGNGRLEAMCFDGVKRLCHIRGKLRKKVWINTSDII   76 (143)
T ss_dssp             CCCCCSSSS---SSCCCCC-CSCCCCCCCCCCCTTEEEEEEEEECSSSEEEEEETTTEEEEEECCSGGGGSCCCCTTCEE
T ss_pred             CCCCCCCcc---ccccccc-cCcccceeeccCCCCeEEEEEEEEcCCCEEEEEECCCCEEEEEecCcceeEEEEeCCCEE
Confidence            899999999   8888887 677778999999999999999999999998         999999999999999999999


Q ss_pred             EEEeeeCCCCeEEEEEEcCHhHHHHHHHcCCCCccccccccc-ccccCCcceee-----ccCCCCCC
Q 035938           73 LVGFRIYQDDKADVILINTPDEAKRLKNIGELPDGTRLNEGL-LLILMMTPMLF-----QDNDIDKI  133 (133)
Q Consensus        73 lV~~~~~~~~KgdIv~ry~~dqik~L~k~g~~P~~f~~~e~~-~~~~~~~~~~f-----~~~did~i  133 (133)
                      ||++|+|+++||||+|+|+++|+++|+++++||+.|..++.. ++..+++.+.|     +++|+|+|
T Consensus        77 lV~~rd~e~~K~DIl~~Y~~~e~~~L~~~~~ip~~~~~~~~~~~~~~~d~~i~F~~~~~dd~d~d~i  143 (143)
T d1d7qa_          77 LVGLRDYQDNKADVILKYNADEARSLKAYGELPEHAKINETDTFGPGDDDEIQFDDIGDDDEDIDDI  143 (143)
T ss_dssp             EEECSSSSSSCCEEEEEECTTTHHHHHHHTSSCTTCCCCCCCSSSCCCCCCCCCCCSCSSCCSCSCC
T ss_pred             EEeccCCcCcEEEEEEECCHHHHHHHHHCCCCChhhhhccccCCCCccccceeecCCCCCccccccC
Confidence            999999999999999999999999999999999999876655 55555666777     67888887

>d1jt8a_ b.40.4.5 (A:) Archaeal initiation factor-1a, aIF1a {Archaeon Methanococcus jannaschii [TaxId: 2190]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Archaeal initiation factor-1a, aIF1a
species: Archaeon Methanococcus jannaschii [TaxId: 2190]

Probab=99.96  E-value=1.3e-30  Score=185.42  Aligned_cols=84  Identities=27%  Similarity=0.406  Sum_probs=77.2

Q ss_pred             cccceeeeccCCCeEEEEEEEecCCceE---------EEEEeccccceeeEeecCCEEEEEeeeCCC-CeEEEEEEcCHh
Q 035938           24 EDQKRELIIKEEGQEYAEVLRMLGNGRL---------RLHWRHQAMHKRVWIAAGDIILVGFRIYQD-DKADVILINTPD   93 (133)
Q Consensus        24 ~~~~~el~~p~e~e~~g~V~~~lGn~~~---------~la~IpGKmrkriWI~~GD~VlV~~~~~~~-~KgdIv~ry~~d   93 (133)
                      ......|+.|+++|+||+|++++||++|         ++|+|||||||++||..||+|||++|+|+. +||||+|+|+++
T Consensus         8 ~~~~~~lp~~ee~e~y~~V~k~lG~~~~~V~c~dg~~rl~~irGK~Rk~~~I~~Gd~VlV~~r~~~~~~K~dIl~~Y~~~   87 (102)
T d1jt8a_           8 QQIRVRIPRKEENEILGIIEQMLGASRVRVRCLDGKTRLGRIPGRLKNRIWVREGDVVIVKPWEVQGDQKCDIIWRYTKT   87 (102)
T ss_dssp             CCCCCCCSCCSSCCEEEEEECSSCSSEEEEEEETTEEEEEECCHHHHHHHCCCSCEEEEECCBCCTTSEEEEEEEESSCS
T ss_pred             cceeeECCCCCCCEEEEEEEEEcCCCEEEEEECCCCEEEEEEcCCcceeeEecCCCEEEEEeeecCCCcEEEEEEECCHH
Confidence            3344557777899999999999999998         999999999999999999999999999995 699999999999


Q ss_pred             HHHHHHHcCCCCcc
Q 035938           94 EAKRLKNIGELPDG  107 (133)
Q Consensus        94 qik~L~k~g~~P~~  107 (133)
                      |+++|+++|+||+.
T Consensus        88 ev~~L~~~~~ipe~  101 (102)
T d1jt8a_          88 QVEWLKRKGYLDEL  101 (102)
T ss_dssp             HHHHHHHHHHHHHC
T ss_pred             HHHHHHHcCCCCCc
Confidence            99999999999975

>d1ah9a_ b.40.4.5 (A:) Translational initiation factor 1, IF1 {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Translational initiation factor 1, IF1
species: Escherichia coli [TaxId: 562]

Probab=99.83  E-value=9.7e-22  Score=131.76  Aligned_cols=56  Identities=21%  Similarity=0.220  Sum_probs=53.1

Q ss_pred             CeEEEEEEEecCCceE---------EEEEeccccce-eeEeecCCEEEEEeeeCCCCeEEEEEEcC
Q 035938           36 GQEYAEVLRMLGNGRL---------RLHWRHQAMHK-RVWIAAGDIILVGFRIYQDDKADVILINT   91 (133)
Q Consensus        36 ~e~~g~V~~~lGn~~~---------~la~IpGKmrk-riWI~~GD~VlV~~~~~~~~KgdIv~ry~   91 (133)
                      .|+.|+|+++|||++|         ++|+||||||+ +|||.+||.|+|++||||++||+|+|||.
T Consensus         6 ie~~G~V~e~lg~~~f~V~l~ng~~~~a~i~Gkmrk~ri~i~~GD~V~Vel~pyd~~kgrIi~R~k   71 (71)
T d1ah9a_           6 IEMQGTVLETLPNTMFRVELENGHVVTAHISGKMRKNYIRILTGDKVTVELTPYDLSKGRIVFRSR   71 (71)
T ss_dssp             EECCEEEEEECSSSEEEEEETTSCEEEEEECSSGGGTTCCCCTTCEECCEECSSCTTEEEECSCCC
T ss_pred             EEEEEEEEEEcCCCEEEEEeCCCCEEEEEccchhheeEEEecCCCEEEEEECccCCCcEEEEEEcC
Confidence            4678999999999998         99999999998 89999999999999999999999999984

>d1hr0w_ b.40.4.5 (W:) Translational initiation factor 1, IF1 {Escherichia coli [TaxId: 562]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Translational initiation factor 1, IF1
species: Escherichia coli [TaxId: 562]

Probab=99.76  E-value=7e-21  Score=127.53  Aligned_cols=54  Identities=19%  Similarity=0.246  Sum_probs=52.0

Q ss_pred             CeEEEEEEEecCCceE---------EEEEeccccce-eeEeecCCEEEEEeeeCCCCeEEEEEE
Q 035938           36 GQEYAEVLRMLGNGRL---------RLHWRHQAMHK-RVWIAAGDIILVGFRIYQDDKADVILI   89 (133)
Q Consensus        36 ~e~~g~V~~~lGn~~~---------~la~IpGKmrk-riWI~~GD~VlV~~~~~~~~KgdIv~r   89 (133)
                      -|+.|+|+++|||++|         ++||+|||||+ +|||.+||.|+|++||||++||+|+||
T Consensus         7 i~~~G~V~~~l~~~~f~V~l~ng~~~~a~i~GkmRk~ri~i~~GD~V~Vel~pyd~~kgrIi~R   70 (71)
T d1hr0w_           7 IRTEGVVTEALPNATFRVKLDSGPEILAYISGKMRMHYIRILPGDRVVVEITPYDPTRGRIVYR   70 (71)
T ss_dssp             CCCEEECCCCCTTTBCCCEESSSCBCCCEECHHHHHTCCCCCTTCEEEEECCTTCTTCCEECSC
T ss_pred             EEEEEEEEEECCCCEEEEEECCCCEEEEEecchhheeeEEecCCCEEEEEECccCCCcEEEEEc
Confidence            5889999999999998         99999999998 899999999999999999999999997

>d1u0la1 b.40.4.5 (A:3-68) Probable GTPase EngC (YjeQ), N-terminal domain {Thermotoga maritima [TaxId: 2336]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Probable GTPase EngC (YjeQ), N-terminal domain
species: Thermotoga maritima [TaxId: 2336]

Probab=97.64  E-value=5.4e-05  Score=48.17  Aligned_cols=51  Identities=14%  Similarity=-0.002  Sum_probs=39.8

Q ss_pred             EEEEEEecCC---------ceEEEEEeccccce-eeEeecCCEEEEEeeeCCCCeEEEEEEcC
Q 035938           39 YAEVLRMLGN---------GRLRLHWRHQAMHK-RVWIAAGDIILVGFRIYQDDKADVILINT   91 (133)
Q Consensus        39 ~g~V~~~lGn---------~~~~la~IpGKmrk-riWI~~GD~VlV~~~~~~~~KgdIv~ry~   91 (133)
                      -|.|++..|+         +.++.|+++|+||+ .+.+..||+|.+++.+  ...|-|...+.
T Consensus         4 ~G~Vi~~~~~~y~V~~~e~g~~~~c~~rG~lr~~~~~~~VGD~V~~~~~~--~~~g~I~~I~p   64 (66)
T d1u0la1           4 RGIVVSFHSNMVTVEDEETGERILCKLRGKFRLQNLKIYVGDRVEYTPDE--TGSGVIENVLH   64 (66)
T ss_dssp             EEEEEEEETTEEEEEETTTCCEEEEEECGGGTTTTCCCCTTCEEEEECCC--SSSEEEEEECC
T ss_pred             eEEEEEEECCEEEEEECCCCcEEEEEeeccccccCCccccCCEEEEEECC--CCeEEEEEEcC
Confidence            4677777775         33489999999998 5779999999998763  55788887664

>d1t9ha1 b.40.4.5 (A:1-67) Probable GTPase EngC (YjeQ), N-terminal domain {Bacillus subtilis [TaxId: 1423]}

class: All beta proteins
fold: OB-fold
superfamily: Nucleic acid-binding proteins
family: Cold shock DNA-binding domain-like
domain: Probable GTPase EngC (YjeQ), N-terminal domain
species: Bacillus subtilis [TaxId: 1423]

Probab=97.62  E-value=6.2e-05  Score=48.05  Aligned_cols=51  Identities=12%  Similarity=0.199  Sum_probs=39.4

Q ss_pred             EEEEEEecCC-----------ceEEEEEeccccce-eeEeecCCEEEEEeeeCCCCeEEEEEEcC
Q 035938           39 YAEVLRMLGN-----------GRLRLHWRHQAMHK-RVWIAAGDIILVGFRIYQDDKADVILINT   91 (133)
Q Consensus        39 ~g~V~~~lGn-----------~~~~la~IpGKmrk-riWI~~GD~VlV~~~~~~~~KgdIv~ry~   91 (133)
                      .|+|+++.||           +.++.|+++|+||+ .+.+..||+|.+++.+  +..|-|...+-
T Consensus         3 ~G~Vik~~~~~y~V~~e~~~~g~~~~C~~RGk~r~~~~~p~VGD~V~~~~~~--~~~g~I~~I~p   65 (67)
T d1t9ha1           3 EGKIIKALSGFYYVLDESEDSDKVIQCRGRGIFRKNKITPLVGDYVVYQAEN--DKEGYLMEIKE   65 (67)
T ss_dssp             EEEEEEEETTEEEEEECSSSSCEEEEEESCSSCCSCCCCCCBTCEEEEECCT--TSCEEEEEECC
T ss_pred             CEEEEEEECCEEEEEecccCCCcEEEEEEceeEecCCCccCcCcEEEEEEcc--CCeEEEEEEec
Confidence            3667777665           44588999999998 6778899999999764  55788877653

>d1g2914 b.40.6.3 (1:302-372) Maltose transport protein MalK, C-terminal domain {Archaeon Thermococcus litoralis [TaxId: 2265]}

class: All beta proteins
fold: OB-fold
superfamily: MOP-like
family: ABC-transporter additional domain
domain: Maltose transport protein MalK, C-terminal domain
species: Archaeon Thermococcus litoralis [TaxId: 2265]

Probab=81.91  E-value=1.2  Score=26.47  Aligned_cols=44  Identities=18%  Similarity=0.201  Sum_probs=30.1

Q ss_pred             eccCCCeE--EEEEEEecCCceE---------EEEEeccccceeeEeecCCEEEEEeee
Q 035938           31 IIKEEGQE--YAEVLRMLGNGRL---------RLHWRHQAMHKRVWIAAGDIILVGFRI   78 (133)
Q Consensus        31 ~~p~e~e~--~g~V~~~lGn~~~---------~la~IpGKmrkriWI~~GD~VlV~~~~   78 (133)
                      ..|+++.+  ...+++.||+..+         ..+++++...    ++.|+.|-+.+.+
T Consensus         2 ~ip~~~~i~~~V~~vE~lG~et~v~~~~~~~~i~~~~~~~~~----~~~G~~v~l~~~~   56 (71)
T d1g2914           2 RVPGENLVRAVVEIVENLGSERIVRLRVGGVTFVGSFRSESR----VREGVEVDVVFDM   56 (71)
T ss_dssp             CCBTTTEEEEEEEEEEECSSCEEEEEEETTEEEEEEECTTCC----CCTTCEEEEEECG
T ss_pred             ccCCCceEEEEEEEEEcccCeEEEEEEECCEEEEEEECCCCC----CCCCCEEEEEECc
Confidence            35666654  4456788998766         6666776665    6788888877755