Citrus Sinensis ID: 036003
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 558 | 2.2.26 [Sep-21-2011] | |||||||
| Q8LK93 | 603 | Pentatricopeptide repeat- | yes | no | 0.962 | 0.890 | 0.692 | 0.0 | |
| Q9FJY7 | 620 | Pentatricopeptide repeat- | no | no | 0.962 | 0.866 | 0.403 | 1e-125 | |
| A8MQA3 | 595 | Pentatricopeptide repeat- | no | no | 0.939 | 0.880 | 0.414 | 1e-120 | |
| Q3E6Q1 | 809 | Pentatricopeptide repeat- | no | no | 0.944 | 0.651 | 0.404 | 1e-116 | |
| Q9LIQ7 | 633 | Pentatricopeptide repeat- | no | no | 0.939 | 0.827 | 0.386 | 1e-115 | |
| Q9LW32 | 659 | Pentatricopeptide repeat- | no | no | 0.922 | 0.781 | 0.413 | 1e-114 | |
| Q9LN01 | 741 | Pentatricopeptide repeat- | no | no | 0.956 | 0.720 | 0.389 | 1e-112 | |
| Q9SZT8 | 632 | Pentatricopeptide repeat- | no | no | 0.971 | 0.857 | 0.376 | 1e-110 | |
| O82380 | 738 | Pentatricopeptide repeat- | no | no | 0.924 | 0.699 | 0.379 | 1e-110 | |
| P93011 | 583 | Pentatricopeptide repeat- | no | no | 0.960 | 0.919 | 0.369 | 1e-110 |
| >sp|Q8LK93|PP145_ARATH Pentatricopeptide repeat-containing protein At2g02980 OS=Arabidopsis thaliana GN=PCMP-H26 PE=2 SV=2 | Back alignment and function desciption |
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Score = 780 bits (2014), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/540 (69%), Positives = 439/540 (81%), Gaps = 3/540 (0%)
Query: 19 TNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLL 78
NT N + L+ +C S R L QI A IK+H++ D++ + KLINFCT++PT SSM +A L
Sbjct: 27 VNTQNPILLISKCNSLRELMQIQAYAIKSHIE-DVSFVAKLINFCTESPTESSMSYARHL 85
Query: 79 FDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAE 138
F+ + EPDIV+FN+MARGYSR P+ LFVE+L G+LPD+Y+FPSLLKACA A+
Sbjct: 86 FEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAV--AK 143
Query: 139 ALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIIT 198
ALEEG+QLHC ++KLGL+ N+YVC TLIN+Y EC DV++AR +F+ I EPCVV YNA+IT
Sbjct: 144 ALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMIT 203
Query: 199 AYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDK 258
YAR +RPNEALSLFRE+Q + LKP ++T+LS LSSCALLGSLDLGKWIH+Y KK+ K
Sbjct: 204 GYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCK 263
Query: 259 YVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMM 318
YVKVNTALIDM AKCG LDDAVS+F+ M KDTQAWSAMIVAYA HG+ KS+LMFE M
Sbjct: 264 YVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMR 323
Query: 319 KAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRL 378
V PDEITFLGLL ACSHTG V+EG YF M K+GIVP IKHYG MVDLL RAG L
Sbjct: 324 SENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNL 383
Query: 379 DEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLC 438
++AY FID+LPI TP+LWR LL++CSSHNNL LA++V ERIFELDDSHGGDYVILSNL
Sbjct: 384 EDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGGDYVILSNLY 443
Query: 439 ARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELV 498
AR +WE VD LRK+MKDR +KVPGCSSIEVNNVV EFFSGDGV S +T L +ALDE+V
Sbjct: 444 ARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMV 503
Query: 499 KELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
KELK+ GYVPDTS+V H +M D+EKEI LRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC
Sbjct: 504 KELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 563
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FJY7|PP449_ARATH Pentatricopeptide repeat-containing protein At5g66520 OS=Arabidopsis thaliana GN=PCMP-H61 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 449 bits (1155), Expect = e-125, Method: Compositional matrix adjust.
Identities = 230/570 (40%), Positives = 340/570 (59%), Gaps = 33/570 (5%)
Query: 20 NTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLF 79
N +S L RC+ LKQIHA +KT L D +TK ++FC + ++ + +A ++F
Sbjct: 13 NLYETMSCLQRCSKQEELKQIHARMLKTGLMQDSYAITKFLSFCISSTSSDFLPYAQIVF 72
Query: 80 DRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEA 139
D PD L+N M RG+S S P R++ L+ +L S + Y+FPSLLKAC+ + A
Sbjct: 73 DGFDRPDTFLWNLMIRGFSCSDEPERSLLLYQRMLCSSAPHNAYTFPSLLKACSNLSA-- 130
Query: 140 LEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITA 199
EE Q+H KLG +++Y +LIN YA + + A +F+ I EP VS+N++I
Sbjct: 131 FEETTQIHAQITKLGYENDVYAVNSLINSYAVTGNFKLAHLLFDRIPEPDDVSWNSVIKG 190
Query: 200 YARSSRPNEALSLFRELQERN-------------------------------LKPTDVTM 228
Y ++ + + AL+LFR++ E+N ++P +V++
Sbjct: 191 YVKAGKMDIALTLFRKMAEKNAISWTTMISGYVQADMNKEALQLFHEMQNSDVEPDNVSL 250
Query: 229 LSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSG 288
+ALS+CA LG+L+ GKWIH Y+ K + + LIDM+AKCG +++A+ VF N+
Sbjct: 251 ANALSACAQLGALEQGKWIHSYLNKTRIRMDSVLGCVLIDMYAKCGEMEEALEVFKNIKK 310
Query: 289 KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNY 348
K QAW+A+I YA HG G ++I F EM K + P+ ITF +L ACS+TGLV+EG
Sbjct: 311 KSVQAWTALISGYAYHGHGREAISKFMEMQKMGIKPNVITFTAVLTACSYTGLVEEGKLI 370
Query: 349 FYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHN 408
FYSM Y + P I+HYGC+VDLLGRAG LDEA RFI E+P+K ++W LL +C H
Sbjct: 371 FYSMERDYNLKPTIEHYGCIVDLLGRAGLLDEAKRFIQEMPLKPNAVIWGALLKACRIHK 430
Query: 409 NLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSI 468
N+ L +++ E + +D HGG YV +N+ A +W+ R+LMK++GV KVPGCS+I
Sbjct: 431 NIELGEEIGEILIAIDPYHGGRYVHKANIHAMDKKWDKAAETRRLMKEQGVAKVPGCSTI 490
Query: 469 EVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALR 528
+ EF +GD H +Q + ++L+ GYVP+ + ++D+E+E +
Sbjct: 491 SLEGTTHEFLAGDRSHPEIEKIQSKWRIMRRKLEENGYVPELEEMLLDLVDDDEREAIVH 550
Query: 529 YHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
HSEKLAIT+GL+ T PGT IR++KNLRVC
Sbjct: 551 QHSEKLAITYGLIKTKPGTIIRIMKNLRVC 580
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Arabidopsis thaliana (taxid: 3702) |
| >sp|A8MQA3|PP330_ARATH Pentatricopeptide repeat-containing protein At4g21065 OS=Arabidopsis thaliana GN=PCMP-H28 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 432 bits (1110), Expect = e-120, Method: Compositional matrix adjust.
Identities = 220/531 (41%), Positives = 344/531 (64%), Gaps = 7/531 (1%)
Query: 32 TSFRGLKQIHAVTIKTHLQ-NDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEP-DIVL 89
+S L+QIHA +I+ + +D + LI + P+ M +AH +F +I +P ++ +
Sbjct: 28 SSITKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPINVFI 87
Query: 90 FNTMARGYSRSKTPIRAIFLFVELLNSGLL-PDDYSFPSLLKACACVGAEALEEGKQLHC 148
+NT+ RGY+ I A L+ E+ SGL+ PD +++P L+KA + L G+ +H
Sbjct: 88 WNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRL--GETIHS 145
Query: 149 FAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNE 208
I+ G S +YV +L++LYA C DV +A ++F+ + E +V++N++I +A + +P E
Sbjct: 146 VVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEE 205
Query: 209 ALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALID 268
AL+L+ E+ + +KP T++S LS+CA +G+L LGK +H Y+ K GL + + + L+D
Sbjct: 206 ALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLD 265
Query: 269 MHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ-VSPDEI 327
++A+CGR+++A ++FD M K++ +W+++IV A +G G ++I +F+ M + + P EI
Sbjct: 266 LYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEI 325
Query: 328 TFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDE 387
TF+G+LYACSH G+V EG+ YF MR++Y I P I+H+GCMVDLL RAG++ +AY +I
Sbjct: 326 TFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKS 385
Query: 388 LPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDV 447
+P++ ++WRTLL +C+ H + LA+ +I +L+ +H GDYV+LSN+ A RW DV
Sbjct: 386 MPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDV 445
Query: 448 DYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYV 507
+RK M GV KVPG S +EV N V EF GD H S + L E+ L+ GYV
Sbjct: 446 QKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYV 505
Query: 508 PDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
P S V + D+E+EEKE A+ YHSEK+AI F L++TP + I VVKNLRVC
Sbjct: 506 PQISNV-YVDVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVC 555
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3E6Q1|PPR32_ARATH Pentatricopeptide repeat-containing protein At1g11290 OS=Arabidopsis thaliana GN=PCMP-H40 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 417 bits (1073), Expect = e-116, Method: Compositional matrix adjust.
Identities = 217/537 (40%), Positives = 333/537 (62%), Gaps = 10/537 (1%)
Query: 25 LSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
+S+LP ++ R + K+IH +++ + +N+ T L++ + S+E A LFD
Sbjct: 240 VSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAK---CGSLETARQLFDG 296
Query: 82 IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
+ E ++V +N+M Y +++ P A+ +F ++L+ G+ P D S L ACA +G LE
Sbjct: 297 MLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGD--LE 354
Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
G+ +H +++LGL+ N+ V +LI++Y +C +V+ A +F + +VS+NA+I +A
Sbjct: 355 RGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFA 414
Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
++ RP +AL+ F +++ R +KP T +S +++ A L KWIH + + LDK V
Sbjct: 415 QNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVF 474
Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
V TAL+DM+AKCG + A +FD MS + W+AMI Y THG G ++ +FEEM K
Sbjct: 475 VTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGT 534
Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
+ P+ +TFL ++ ACSH+GLV+ G FY M++ Y I + HYG MVDLLGRAGRL+EA
Sbjct: 535 IKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEA 594
Query: 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARA 441
+ FI ++P+K ++ +L +C H N+ A++ ER+FEL+ GG +V+L+N+ A
Sbjct: 595 WDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAA 654
Query: 442 GRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKEL 501
WE V +R M +G+ K PGCS +E+ N V FFSG H S + L++L+ +
Sbjct: 655 SMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHI 714
Query: 502 KMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
K GYVPDT+LV +E++ KE L HSEKLAI+FGLLNT GTTI V KNLRVC
Sbjct: 715 KEAGYVPDTNLVL--GVENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVC 769
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LIQ7|PP252_ARATH Pentatricopeptide repeat-containing protein At3g24000, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H87 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 416 bits (1069), Expect = e-115, Method: Compositional matrix adjust.
Identities = 208/538 (38%), Positives = 329/538 (61%), Gaps = 14/538 (2%)
Query: 26 SLLPRCTSFRGLKQ---IHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRI 82
+LL +CT F+ L Q +HA +++ ++D+ + L+N + S+E A +F+++
Sbjct: 65 TLLKKCTVFKLLIQGRIVHAHILQSIFRHDIVMGNTLLNMYAK---CGSLEEARKVFEKM 121
Query: 83 PEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEE 142
P+ D V + T+ GYS+ P A+ F ++L G P++++ S++KA A
Sbjct: 122 PQRDFVTWTTLISGYSQHDRPCDALLFFNQMLRFGYSPNEFTLSSVIKAAAAERRGCC-- 179
Query: 143 GKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR 202
G QLH F +K G +SN++V + L++LY ++ A+ +F+ + VS+NA+I +AR
Sbjct: 180 GHQLHGFCVKCGFDSNVHVGSALLDLYTRYGLMDDAQLVFDALESRNDVSWNALIAGHAR 239
Query: 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262
S +AL LF+ + +P+ + S +C+ G L+ GKW+H Y+ K G
Sbjct: 240 RSGTEKALELFQGMLRDGFRPSHFSYASLFGACSSTGFLEQGKWVHAYMIKSGEKLVAFA 299
Query: 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322
L+DM+AK G + DA +FD ++ +D +W++++ AYA HG G +++ FEEM + +
Sbjct: 300 GNTLLDMYAKSGSIHDARKIFDRLAKRDVVSWNSLLTAYAQHGFGKEAVWWFEEMRRVGI 359
Query: 323 SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382
P+EI+FL +L ACSH+GL+DEGW+Y Y + K GIVP HY +VDLLGRAG L+ A
Sbjct: 360 RPNEISFLSVLTACSHSGLLDEGWHY-YELMKKDGIVPEAWHYVTVVDLLGRAGDLNRAL 418
Query: 383 RFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAG 442
RFI+E+PI+ T +W+ LL++C H N L E +FELD G +VIL N+ A G
Sbjct: 419 RFIEEMPIEPTAAIWKALLNACRMHKNTELGAYAAEHVFELDPDDPGPHVILYNIYASGG 478
Query: 443 RWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELK 502
RW D +RK MK+ GV K P CS +E+ N + F + D H ++ + +E++ ++K
Sbjct: 479 RWNDAARVRKKMKESGVKKEPACSWVEIENAIHMFVANDERHPQREEIARKWEEVLAKIK 538
Query: 503 MVGYVPDTS--LVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
+GYVPDTS +VH ++ +E+E+ L+YHSEK+A+ F LLNTPPG+TI + KN+RVC
Sbjct: 539 ELGYVPDTSHVIVH---VDQQEREVNLQYHSEKIALAFALLNTPPGSTIHIKKNIRVC 593
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LW32|PP258_ARATH Pentatricopeptide repeat-containing protein At3g26782, mitochondrial OS=Arabidopsis thaliana GN=PCMP-H34 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 413 bits (1061), Expect = e-114, Method: Compositional matrix adjust.
Identities = 219/530 (41%), Positives = 330/530 (62%), Gaps = 15/530 (2%)
Query: 38 KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
KQ H Q+D+ V + LI T +E A +FD IP+ +IV + +M RGY
Sbjct: 96 KQTHQQAFVFGYQSDIFVSSALI---VMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGY 152
Query: 98 SRSKTPIRAIFLFVELL------NSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAI 151
+ + A+ LF +LL + + D S++ AC+ V A+ L E +H F I
Sbjct: 153 DLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTE--SIHSFVI 210
Query: 152 KLGLNSNLYVCTTLINLYAECSD--VEAARRIFENISEPCVVSYNAIITAYARSSRPNEA 209
K G + + V TL++ YA+ + V AR+IF+ I + VSYN+I++ YA+S NEA
Sbjct: 211 KRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEA 270
Query: 210 LSLFREL-QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALID 268
+FR L + + + +T+ + L + + G+L +GK IH+ + + GL+ V V T++ID
Sbjct: 271 FEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGTSIID 330
Query: 269 MHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEIT 328
M+ KCGR++ A FD M K+ ++W+AMI Y HG K++ +F M+ + V P+ IT
Sbjct: 331 MYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYIT 390
Query: 329 FLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL 388
F+ +L ACSH GL EGW +F +M+ ++G+ PG++HYGCMVDLLGRAG L +AY I +
Sbjct: 391 FVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRM 450
Query: 389 PIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVD 448
+K I+W +LL++C H N+ LA+ + R+FELD S+ G Y++LS++ A AGRW+DV+
Sbjct: 451 KMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRWKDVE 510
Query: 449 YLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVP 508
+R +MK+RG++K PG S +E+N V F GD H + + L EL ++L GYV
Sbjct: 511 RVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEAGYVS 570
Query: 509 DTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
+TS V H D+++EEKE+ LR HSEKLAI FG++NT PG+T+ VVKNLRVC
Sbjct: 571 NTSSVCH-DVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVC 619
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LN01|PPR21_ARATH Pentatricopeptide repeat-containing protein At1g08070 OS=Arabidopsis thaliana GN=PCMP-H12 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 406 bits (1043), Expect = e-112, Method: Compositional matrix adjust.
Identities = 221/567 (38%), Positives = 334/567 (58%), Gaps = 33/567 (5%)
Query: 22 PNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQN--------------- 66
P L + +F+ +QIH +K DL V T LI+ QN
Sbjct: 138 PFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRLEDAHKVFDKSPH 197
Query: 67 -------------PTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVEL 113
+ +E+A LFD IP D+V +N M GY+ + A+ LF ++
Sbjct: 198 RDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDM 257
Query: 114 LNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECS 173
+ + + PD+ + +++ ACA G+ +E G+Q+H + G SNL + LI+LY++C
Sbjct: 258 MKTNVRPDESTMVTVVSACAQSGS--IELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCG 315
Query: 174 DVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALS 233
++E A +FE + V+S+N +I Y + EAL LF+E+ P DVTMLS L
Sbjct: 316 ELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILP 375
Query: 234 SCALLGSLDLGKWIHEYIKKY--GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDT 291
+CA LG++D+G+WIH YI K G+ + T+LIDM+AKCG ++ A VF+++ K
Sbjct: 376 ACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSL 435
Query: 292 QAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYS 351
+W+AMI +A HG+ S +F M K + PD+ITF+GLL ACSH+G++D G + F +
Sbjct: 436 SSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRT 495
Query: 352 MRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLG 411
M Y + P ++HYGCM+DLLG +G EA I+ + ++ ++W +LL +C H N+
Sbjct: 496 MTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVE 555
Query: 412 LAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVN 471
L + E + +++ + G YV+LSN+ A AGRW +V R L+ D+G+ KVPGCSSIE++
Sbjct: 556 LGESFAENLIKIEPENPGSYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEID 615
Query: 472 NVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHS 531
+VV EF GD H + ++ L+E+ L+ G+VPDTS V +ME+E KE ALR+HS
Sbjct: 616 SVVHEFIIGDKFHPRNREIYGMLEEMEVLLEKAGFVPDTSEVLQ-EMEEEWKEGALRHHS 674
Query: 532 EKLAITFGLLNTPPGTTIRVVKNLRVC 558
EKLAI FGL++T PGT + +VKNLRVC
Sbjct: 675 EKLAIAFGLISTKPGTKLTIVKNLRVC 701
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9SZT8|PP354_ARATH Pentatricopeptide repeat-containing protein At4g37380, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H48 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 400 bits (1029), Expect = e-110, Method: Compositional matrix adjust.
Identities = 223/593 (37%), Positives = 347/593 (58%), Gaps = 51/593 (8%)
Query: 1 MATTPSPPITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLI 60
++TT + PP KL L+ + S + QIHA ++ +L L+ ++
Sbjct: 16 LSTTATARFRLPPPEKLAV-------LIDKSQSVDEVLQIHAAILRHNLL--LHPRYPVL 66
Query: 61 NFCTQNPTTS--SMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGL 118
N S + H+ LF + +PD+ LF S + +A L+V+LL+S +
Sbjct: 67 NLKLHRAYASHGKIRHSLALFHQTIDPDLFLFTAAINTASINGLKDQAFLLYVQLLSSEI 126
Query: 119 LPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSD---- 174
P++++F SLLK+C+ + GK +H +K GL + YV T L+++YA+ D
Sbjct: 127 NPNEFTFSSLLKSCST------KSGKLIHTHVLKFGLGIDPYVATGLVDVYAKGGDVVSA 180
Query: 175 ---------------------------VEAARRIFENISEPCVVSYNAIITAYARSSRPN 207
VEAAR +F+++ E +VS+N +I YA+ PN
Sbjct: 181 QKVFDRMPERSLVSSTAMITCYAKQGNVEAARALFDSMCERDIVSWNVMIDGYAQHGFPN 240
Query: 208 EALSLFRE-LQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTAL 266
+AL LF++ L E KP ++T+++ALS+C+ +G+L+ G+WIH ++K + VKV T L
Sbjct: 241 DALMLFQKLLAEGKPKPDEITVVAALSACSQIGALETGRWIHVFVKSSRIRLNVKVCTGL 300
Query: 267 IDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMK-AQVSPD 325
IDM++KCG L++AV VF++ KD AW+AMI YA HG ++ +F EM + P
Sbjct: 301 IDMYSKCGSLEEAVLVFNDTPRKDIVAWNAMIAGYAMHGYSQDALRLFNEMQGITGLQPT 360
Query: 326 EITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFI 385
+ITF+G L AC+H GLV+EG F SM +YGI P I+HYGC+V LLGRAG+L AY I
Sbjct: 361 DITFIGTLQACAHAGLVNEGIRIFESMGQEYGIKPKIEHYGCLVSLLGRAGQLKRAYETI 420
Query: 386 DELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWE 445
+ + + +LW ++L SC H + L K++ E + L+ + G YV+LSN+ A G +E
Sbjct: 421 KNMNMDADSVLWSSVLGSCKLHGDFVLGKEIAEYLIGLNIKNSGIYVLLSNIYASVGDYE 480
Query: 446 DVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVG 505
V +R LMK++G++K PG S+IE+ N V EF +GD HS S ++ L ++ + +K G
Sbjct: 481 GVAKVRNLMKEKGIVKEPGISTIEIENKVHEFRAGDREHSKSKEIYTMLRKISERIKSHG 540
Query: 506 YVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
YVP+T+ V D+E+ EKE +L+ HSE+LAI +GL++T PG+ +++ KNLRVC
Sbjct: 541 YVPNTNTVLQ-DLEETEKEQSLQVHSERLAIAYGLISTKPGSPLKIFKNLRVC 592
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|O82380|PP175_ARATH Pentatricopeptide repeat-containing protein At2g29760, chloroplastic OS=Arabidopsis thaliana GN=PCMP-H33 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 400 bits (1029), Expect = e-110, Method: Compositional matrix adjust.
Identities = 210/553 (37%), Positives = 335/553 (60%), Gaps = 37/553 (6%)
Query: 38 KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
+ +H + +K+ + +D+ V LI+ C + ++ A +F I E D+V +N+M G+
Sbjct: 151 QSLHGMAVKSAVGSDVFVANSLIH-CYF--SCGDLDSACKVFTTIKEKDVVSWNSMINGF 207
Query: 98 SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
+ +P +A+ LF ++ + + + +L ACA + LE G+Q+ + + +N
Sbjct: 208 VQKGSPDKALELFKKMESEDVKASHVTMVGVLSACAKI--RNLEFGRQVCSYIEENRVNV 265
Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPC---------------------------- 189
NL + ++++Y +C +E A+R+F+ + E
Sbjct: 266 NLTLANAMLDMYTKCGSIEDAKRLFDAMEEKDNVTWTTMLDGYAISEDYEAAREVLNSMP 325
Query: 190 ---VVSYNAIITAYARSSRPNEALSLFRELQ-ERNLKPTDVTMLSALSSCALLGSLDLGK 245
+V++NA+I+AY ++ +PNEAL +F ELQ ++N+K +T++S LS+CA +G+L+LG+
Sbjct: 326 QKDIVAWNALISAYEQNGKPNEALIVFHELQLQKNMKLNQITLVSTLSACAQVGALELGR 385
Query: 246 WIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHG 305
WIH YIKK+G+ V +ALI M++KCG L+ + VF+++ +D WSAMI A HG
Sbjct: 386 WIHSYIKKHGIRMNFHVTSALIHMYSKCGDLEKSREVFNSVEKRDVFVWSAMIGGLAMHG 445
Query: 306 QGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHY 365
G++++ MF +M +A V P+ +TF + ACSHTGLVDE + F+ M YGIVP KHY
Sbjct: 446 CGNEAVDMFYKMQEANVKPNGVTFTNVFCACSHTGLVDEAESLFHQMESNYGIVPEEKHY 505
Query: 366 GCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDD 425
C+VD+LGR+G L++A +FI+ +PI + +W LL +C H NL LA+ R+ EL+
Sbjct: 506 ACIVDVLGRSGYLEKAVKFIEAMPIPPSTSVWGALLGACKIHANLNLAEMACTRLLELEP 565
Query: 426 SHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHS 485
+ G +V+LSN+ A+ G+WE+V LRK M+ G+ K PGCSSIE++ ++ EF SGD H
Sbjct: 566 RNDGAHVLLSNIYAKLGKWENVSELRKHMRVTGLKKEPGCSSIEIDGMIHEFLSGDNAHP 625
Query: 486 YSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPP 545
S + L E++++LK GY P+ S V E+E KE +L HSEKLAI +GL++T
Sbjct: 626 MSEKVYGKLHEVMEKLKSNGYEPEISQVLQIIEEEEMKEQSLNLHSEKLAICYGLISTEA 685
Query: 546 GTTIRVVKNLRVC 558
IRV+KNLRVC
Sbjct: 686 PKVIRVIKNLRVC 698
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P93011|PP182_ARATH Pentatricopeptide repeat-containing protein At2g33760 OS=Arabidopsis thaliana GN=PCMP-H6 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 400 bits (1028), Expect = e-110, Method: Compositional matrix adjust.
Identities = 202/547 (36%), Positives = 330/547 (60%), Gaps = 11/547 (2%)
Query: 16 KLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHA 75
K+ N+ +++ + L+Q+HA I T ++LTKLI + ++ +
Sbjct: 4 KVAANSAAYEAIVRAGPRVKQLQQVHAHLIVTGYGRSRSLLTKLITLAC---SARAIAYT 60
Query: 76 HLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACV 135
HLLF +P PD LFN++ + S+ + P+ + + +L+S + P +Y+F S++K+CA +
Sbjct: 61 HLLFLSVPLPDDFLFNSVIKSTSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADL 120
Query: 136 GAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNA 195
AL GK +HC A+ G + YV L+ Y++C D+E AR++F+ + E +V++N+
Sbjct: 121 --SALRIGKGVHCHAVVSGFGLDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNS 178
Query: 196 IITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYG 255
+++ + ++ +EA+ +F +++E +P T +S LS+CA G++ LG W+H+YI G
Sbjct: 179 LVSGFEQNGLADEAIQVFYQMRESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEG 238
Query: 256 LDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFE 315
LD VK+ TALI+++++CG + A VFD M + AW+AMI AY THG G +++ +F
Sbjct: 239 LDLNVKLGTALINLYSRCGDVGKAREVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFN 298
Query: 316 EMM-KAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR 374
+M P+ +TF+ +L AC+H GLV+EG + + M Y ++PG++H+ CMVD+LGR
Sbjct: 299 KMEDDCGPIPNNVTFVAVLSACAHAGLVEEGRSVYKRMTKSYRLIPGVEHHVCMVDMLGR 358
Query: 375 AGRLDEAYRFIDELPI---KSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDY 431
AG LDEAY+FI +L + P LW +L +C H N L ++ +R+ L+ + G +
Sbjct: 359 AGFLDEAYKFIHQLDATGKATAPALWTAMLGACKMHRNYDLGVEIAKRLIALEPDNPGHH 418
Query: 432 VILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQ 491
V+LSN+ A +G+ ++V ++R M + K G S IEV N F GD H + ++
Sbjct: 419 VMLSNIYALSGKTDEVSHIRDGMMRNNLRKQVGYSVIEVENKTYMFSMGDESHQETGEIY 478
Query: 492 KALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRV 551
+ L+ L+ K +GY P + V H +E+EEKE ALRYHSEKLA+ FGLL T I +
Sbjct: 479 RYLETLISRCKEIGYAPVSEEVMH-QVEEEEKEFALRYHSEKLAVAFGLLKTVD-VAITI 536
Query: 552 VKNLRVC 558
VKNLR+C
Sbjct: 537 VKNLRIC 543
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 558 | ||||||
| 225425668 | 595 | PREDICTED: pentatricopeptide repeat-cont | 0.989 | 0.927 | 0.749 | 0.0 | |
| 224112267 | 601 | predicted protein [Populus trichocarpa] | 0.996 | 0.925 | 0.760 | 0.0 | |
| 356498282 | 609 | PREDICTED: pentatricopeptide repeat-cont | 0.994 | 0.911 | 0.732 | 0.0 | |
| 449435340 | 604 | PREDICTED: pentatricopeptide repeat-cont | 0.987 | 0.912 | 0.717 | 0.0 | |
| 357486999 | 586 | Pentatricopeptide repeat-containing prot | 0.931 | 0.887 | 0.696 | 0.0 | |
| 297814598 | 605 | pentatricopeptide repeat-containing prot | 0.978 | 0.902 | 0.697 | 0.0 | |
| 15227067 | 603 | pentatricopeptide repeat-containing prot | 0.962 | 0.890 | 0.692 | 0.0 | |
| 21780142 | 603 | hypothetical protein [Arabidopsis thalia | 0.962 | 0.890 | 0.690 | 0.0 | |
| 125588235 | 611 | hypothetical protein OsJ_12939 [Oryza sa | 0.985 | 0.900 | 0.566 | 0.0 | |
| 357111415 | 615 | PREDICTED: pentatricopeptide repeat-cont | 0.985 | 0.894 | 0.564 | 0.0 |
| >gi|225425668|ref|XP_002269694.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980 [Vitis vinifera] gi|296086362|emb|CBI31951.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 890 bits (2300), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 415/554 (74%), Positives = 484/554 (87%), Gaps = 2/554 (0%)
Query: 5 PSPPITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCT 64
P+PP+T PP +NT + LSLLP+CTS R LKQ+ A IKTHL +DL+VLTK INFC+
Sbjct: 4 PAPPVTPMCPPNSNSNTTHPLSLLPKCTSLRELKQLQAFAIKTHLHSDLSVLTKFINFCS 63
Query: 65 QNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYS 124
NPTT+SM+HAH LFD+IP+PDIVLFNTMARGY+R+ TP+RA LF ++L SGL PDDY+
Sbjct: 64 LNPTTTSMQHAHHLFDQIPQPDIVLFNTMARGYARTDTPLRAFTLFTQILFSGLFPDDYT 123
Query: 125 FPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFEN 184
FPSLLKACA +ALEEG+QLHC AIKLGL+ N+YVC TLIN+Y C++++ ARR+F+
Sbjct: 124 FPSLLKACA--SCKALEEGRQLHCLAIKLGLSENVYVCPTLINMYTACNEMDCARRVFDK 181
Query: 185 ISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLG 244
I EPCVV+YNA+IT YAR SRPNEALSLFRELQ RNLKPTDVTMLS LSSCALLG+LDLG
Sbjct: 182 IWEPCVVTYNAMITGYARGSRPNEALSLFRELQARNLKPTDVTMLSVLSSCALLGALDLG 241
Query: 245 KWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATH 304
KW+HEY+KK G +++VKV+TALIDM+AKCG LDDAV VF+NM+ +DTQAWSAMI+AYA H
Sbjct: 242 KWMHEYVKKNGFNRFVKVDTALIDMYAKCGSLDDAVCVFENMAVRDTQAWSAMIMAYAIH 301
Query: 305 GQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKH 364
G G K++ +F+EM KA PDEITFLGLLYACSHTGLV+EG+ YFY MRDKYG++PGIKH
Sbjct: 302 GHGLKAVSLFKEMRKAGTEPDEITFLGLLYACSHTGLVEEGFEYFYGMRDKYGVIPGIKH 361
Query: 365 YGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD 424
YGCMVDLLGRAGRL+EAY FI LPI+ TPILWRTLLS+C SH N+ L K+VIE+IFELD
Sbjct: 362 YGCMVDLLGRAGRLEEAYEFIVGLPIRPTPILWRTLLSACGSHGNVELGKRVIEQIFELD 421
Query: 425 DSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVH 484
DSHGGDY+ILSNLCARAGRWEDV+Y+RKLM +RGV+K+PGCSS+EVNNVV EFFSGDGVH
Sbjct: 422 DSHGGDYIILSNLCARAGRWEDVNYVRKLMNERGVVKIPGCSSVEVNNVVHEFFSGDGVH 481
Query: 485 SYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTP 544
S ST L +ALDELVKELK+VGYVP+TSLV H DMEDEEKE+ LRYHSEKLAITFGLLNTP
Sbjct: 482 SVSTKLHQALDELVKELKLVGYVPNTSLVFHADMEDEEKEVTLRYHSEKLAITFGLLNTP 541
Query: 545 PGTTIRVVKNLRVC 558
PGTTIRVVKNLRVC
Sbjct: 542 PGTTIRVVKNLRVC 555
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224112267|ref|XP_002316137.1| predicted protein [Populus trichocarpa] gi|222865177|gb|EEF02308.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 885 bits (2288), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 428/563 (76%), Positives = 481/563 (85%), Gaps = 7/563 (1%)
Query: 1 MATTPSPPITQSPPPK----LCTNTPNAL-SLLPRCTSFRGLKQIHAVTIKTHLQNDLNV 55
MAT P PP+ Q P + T P++L S LP+CTS + LKQI A +IKTHLQNDL +
Sbjct: 1 MATAPFPPVIQQSPSQHSSYYNTTYPSSLLSCLPKCTSLKELKQIQAFSIKTHLQNDLQI 60
Query: 56 LTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLN 115
LTKLIN CTQNPTT+SM++AH LF+ IP+PDIVLFN+M RGYSRS P++AI LF++ LN
Sbjct: 61 LTKLINSCTQNPTTASMDYAHQLFEAIPQPDIVLFNSMFRGYSRSNAPLKAISLFIKALN 120
Query: 116 SGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDV 175
LLPDDY+FPSLLKAC V A+A ++GKQLHC AIKLGLN N YVC TLIN+YA C+DV
Sbjct: 121 YNLLPDDYTFPSLLKAC--VVAKAFQQGKQLHCLAIKLGLNENPYVCPTLINMYAGCNDV 178
Query: 176 EAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSC 235
+ A+R+F+ I EPCVVSYNAIIT YARSSRPNEALSLFR+LQ R LKP DVT+LS LSSC
Sbjct: 179 DGAQRVFDEILEPCVVSYNAIITGYARSSRPNEALSLFRQLQARKLKPNDVTVLSVLSSC 238
Query: 236 ALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWS 295
ALLG+LDLGKWIHEY+KK GLDKYVKVNTALIDM+AKCG LD A+SVF++MS +DTQAWS
Sbjct: 239 ALLGALDLGKWIHEYVKKNGLDKYVKVNTALIDMYAKCGSLDGAISVFESMSVRDTQAWS 298
Query: 296 AMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDK 355
AMIVAYA HGQG + MFEEM +A+V PDEITFLGLLYACSHTGLVDEG+ YFYSM +
Sbjct: 299 AMIVAYAMHGQGQDVMSMFEEMARAKVQPDEITFLGLLYACSHTGLVDEGFRYFYSMSEV 358
Query: 356 YGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQ 415
YGI+PGIKHYGCMVDLLGRAG L EAY+FIDELPIK TPILWRTLLSSCSSH NL LAKQ
Sbjct: 359 YGIIPGIKHYGCMVDLLGRAGLLHEAYKFIDELPIKPTPILWRTLLSSCSSHGNLELAKQ 418
Query: 416 VIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVR 475
V+ +I ELDDSHGGDYVILSNLCARAG+WEDVD LRKLM +G +K+PGCSSIEV+NVV
Sbjct: 419 VMNQILELDDSHGGDYVILSNLCARAGKWEDVDTLRKLMIHKGAVKIPGCSSIEVDNVVH 478
Query: 476 EFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLA 535
EFFSGDGVH ST L +ALDELVKELK VGYVPDTSLV H DMEDEEKEI LRYHSEKLA
Sbjct: 479 EFFSGDGVHYVSTALHRALDELVKELKSVGYVPDTSLVVHPDMEDEEKEITLRYHSEKLA 538
Query: 536 ITFGLLNTPPGTTIRVVKNLRVC 558
I+FGLLNTPPGTTIRVVKNLRVC
Sbjct: 539 ISFGLLNTPPGTTIRVVKNLRVC 561
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356498282|ref|XP_003517982.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 858 bits (2217), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 419/572 (73%), Positives = 477/572 (83%), Gaps = 17/572 (2%)
Query: 1 MATTPSPPITQSPPPKLCTNTP--------------NALSLLPRCTSFRGLKQIHAVTIK 46
MATTP KL T P + LSL+P+CTS R LKQI A TIK
Sbjct: 1 MATTPILQCVSHSLTKLNTEAPRHEPNTAALEPPSSSILSLIPKCTSLRELKQIQAYTIK 60
Query: 47 THLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRA 106
TH QN+ VLTKLINFCT NPT +SM+HAH +FD+IP+PDIVLFNTMARGY+R P+RA
Sbjct: 61 TH-QNNPTVLTKLINFCTSNPTIASMDHAHRMFDKIPQPDIVLFNTMARGYARFDDPLRA 119
Query: 107 IFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLI 166
I L ++L SGLLPDDY+F SLLKACA + +ALEEGKQLHC A+KLG+ N+YVC TLI
Sbjct: 120 ILLCSQVLCSGLLPDDYTFSSLLKACARL--KALEEGKQLHCLAVKLGVGDNMYVCPTLI 177
Query: 167 NLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDV 226
N+Y C+DV+AARR+F+ I EPCVV+YNAIIT+ AR+SRPNEAL+LFRELQE LKPTDV
Sbjct: 178 NMYTACNDVDAARRVFDKIGEPCVVAYNAIITSCARNSRPNEALALFRELQESGLKPTDV 237
Query: 227 TMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNM 286
TML ALSSCALLG+LDLG+WIHEY+KK G D+YVKVNTALIDM+AKCG LDDAVSVF +M
Sbjct: 238 TMLVALSSCALLGALDLGRWIHEYVKKNGFDQYVKVNTALIDMYAKCGSLDDAVSVFKDM 297
Query: 287 SGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGW 346
+DTQAWSAMIVAYATHG G ++I M EM KA+V PDEITFLG+LYACSHTGLV+EG+
Sbjct: 298 PRRDTQAWSAMIVAYATHGHGSQAISMLREMKKAKVQPDEITFLGILYACSHTGLVEEGY 357
Query: 347 NYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSS 406
YF+SM +YGIVP IKHYGCM+DLLGRAGRL+EA +FIDELPIK TPILWRTLLSSCSS
Sbjct: 358 EYFHSMTHEYGIVPSIKHYGCMIDLLGRAGRLEEACKFIDELPIKPTPILWRTLLSSCSS 417
Query: 407 HNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCS 466
H N+ +AK VI+RIFELDDSHGGDYVILSNLCAR GRW+DV++LRK+M D+G LKVPGCS
Sbjct: 418 HGNVEMAKLVIQRIFELDDSHGGDYVILSNLCARNGRWDDVNHLRKMMVDKGALKVPGCS 477
Query: 467 SIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIA 526
SIEVNNVV EFFSGDGVHS ST L ALDELVKELK+ GYVPDTSLV + D+EDEEKEI
Sbjct: 478 SIEVNNVVHEFFSGDGVHSTSTILHHALDELVKELKLAGYVPDTSLVFYADIEDEEKEIV 537
Query: 527 LRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
LRYHSEKLAIT+GLLNTPPGTTIRVVKNLRVC
Sbjct: 538 LRYHSEKLAITYGLLNTPPGTTIRVVKNLRVC 569
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449435340|ref|XP_004135453.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980-like [Cucumis sativus] gi|449478665|ref|XP_004155385.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 838 bits (2164), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 399/556 (71%), Positives = 468/556 (84%), Gaps = 5/556 (0%)
Query: 3 TTPSPPITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINF 62
T PS +++ + N + LSLL +CTS LKQI A TIKT+LQ+D++VLTKLINF
Sbjct: 14 TKPSSAFSKN---EFVINQLHPLSLLSKCTSLNELKQIQAYTIKTNLQSDISVLTKLINF 70
Query: 63 CTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDD 122
CT NPTTS M+HAH LFD+I + DI+LFN MARGY+RS +P A LF ELL SGLLPDD
Sbjct: 71 CTLNPTTSYMDHAHHLFDQILDKDIILFNIMARGYARSNSPYLAFSLFGELLCSGLLPDD 130
Query: 123 YSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIF 182
Y+F SLLKACA ++AL EG LHCFA+KLGLN N+Y+C TLIN+YAEC+D+ AAR +F
Sbjct: 131 YTFSSLLKACA--SSKALREGMGLHCFAVKLGLNHNIYICPTLINMYAECNDMNAARGVF 188
Query: 183 ENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLD 242
+ + +PC+VSYNAIIT YARSS+PNEALSLFRELQ N++PTDVTMLS + SCALLG+LD
Sbjct: 189 DEMEQPCIVSYNAIITGYARSSQPNEALSLFRELQASNIEPTDVTMLSVIMSCALLGALD 248
Query: 243 LGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYA 302
LGKWIHEY+KK G DKYVKVNTALIDM AKCG L DA+S+F+ M +DTQAWSAMIVA+A
Sbjct: 249 LGKWIHEYVKKKGFDKYVKVNTALIDMFAKCGSLTDAISIFEGMRVRDTQAWSAMIVAFA 308
Query: 303 THGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGI 362
THG G K+I MFEEM + V PDEITFLGLLYACSH GLV++G YFYSM YGI PGI
Sbjct: 309 THGDGLKAISMFEEMKREGVRPDEITFLGLLYACSHAGLVEQGRGYFYSMSKTYGITPGI 368
Query: 363 KHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFE 422
KHYGCMVDLLGRAG LDEAY F+D+L IK+TPILWRTLLS+CS+H N+ +AK+VIERIFE
Sbjct: 369 KHYGCMVDLLGRAGHLDEAYNFVDKLEIKATPILWRTLLSACSTHGNVEMAKRVIERIFE 428
Query: 423 LDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDG 482
LDD+HGGDYVILSNL AR GRWEDV++LRKLMKDRGV+KVPGCSS+EVNNVV EFFSGDG
Sbjct: 429 LDDAHGGDYVILSNLYARVGRWEDVNHLRKLMKDRGVVKVPGCSSVEVNNVVHEFFSGDG 488
Query: 483 VHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLN 542
VH S +L++ALDEL+KE+K+VGYVPDTSLV+H DME+E KE+ LRYHSEKLA+ FGLLN
Sbjct: 489 VHCVSVELRRALDELMKEIKLVGYVPDTSLVYHADMEEEGKELVLRYHSEKLAMAFGLLN 548
Query: 543 TPPGTTIRVVKNLRVC 558
TPPGTTIRV KNLR+C
Sbjct: 549 TPPGTTIRVAKNLRIC 564
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357486999|ref|XP_003613787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355515122|gb|AES96745.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] | Back alignment and taxonomy information |
|---|
Score = 792 bits (2046), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/537 (69%), Positives = 440/537 (81%), Gaps = 17/537 (3%)
Query: 22 PNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
P+ +SL+P+CT+ + LKQI A TIKT+ QN+ NV+TK INFCT NPT +SMEHAH LFD+
Sbjct: 27 PHLISLIPKCTTLKELKQIQAYTIKTNYQNNTNVITKFINFCTSNPTKASMEHAHQLFDQ 86
Query: 82 IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
I +P+IVLFNTMARGY+R P+R I F L +AL
Sbjct: 87 ITQPNIVLFNTMARGYARLNDPLRMITHFRRCLR-----------------LVSKVKALA 129
Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
EGKQLHCFA+KLG++ N+YV TLIN+Y C D++A+RR+F+ I EPCVV+YNAII + A
Sbjct: 130 EGKQLHCFAVKLGVSDNMYVVPTLINMYTACGDIDASRRVFDKIDEPCVVAYNAIIMSLA 189
Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261
R++R NEAL+LFRELQE LKPTDVTML LSSCALLGSLDLG+W+HEY+KKYG D+YVK
Sbjct: 190 RNNRANEALALFRELQEIGLKPTDVTMLVVLSSCALLGSLDLGRWMHEYVKKYGFDRYVK 249
Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
VNT LIDM+AKCG LDDAV+VF +M +DTQAWSA+IVAYATHG G ++I M EM K +
Sbjct: 250 VNTTLIDMYAKCGSLDDAVNVFRDMPKRDTQAWSAIIVAYATHGDGFQAISMLNEMKKEK 309
Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
V PDEITFLG+LYACSH GLV+EG+ YF+ M ++YGIVP IKHYGCMVDLLGRAGRLDEA
Sbjct: 310 VQPDEITFLGILYACSHNGLVEEGFEYFHGMTNEYGIVPSIKHYGCMVDLLGRAGRLDEA 369
Query: 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARA 441
Y+FIDELPIK TPILWRTLLS+CS+H N+ + K+VIERIFELDDSHGGDYVI SNLCAR
Sbjct: 370 YKFIDELPIKPTPILWRTLLSACSTHGNVEMGKRVIERIFELDDSHGGDYVIFSNLCARY 429
Query: 442 GRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKEL 501
G+W+DV++LRK M D+G +K+PGCSSIEVNNVV EFF+G+GVHS ST L +ALDELVKEL
Sbjct: 430 GKWDDVNHLRKTMIDKGAVKIPGCSSIEVNNVVHEFFAGEGVHSTSTTLHRALDELVKEL 489
Query: 502 KMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
K GYVPDTSLV + DMEDEEKEI LRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC
Sbjct: 490 KSAGYVPDTSLVFYADMEDEEKEIILRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 546
|
Source: Medicago truncatula Species: Medicago truncatula Genus: Medicago Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|297814598|ref|XP_002875182.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297321020|gb|EFH51441.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] | Back alignment and taxonomy information |
|---|
Score = 787 bits (2033), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 385/552 (69%), Positives = 446/552 (80%), Gaps = 6/552 (1%)
Query: 10 TQSPPPKLCT---NTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQN 66
T + P K+ T N PN + L+ +C S R L QI A IK+H Q D++ TKLINFCT++
Sbjct: 17 TFTKPLKIDTVNPNPPNPILLISKCNSERELMQIQAYAIKSH-QEDVSFNTKLINFCTES 75
Query: 67 PTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFP 126
PT SSM +A LFD + EPDIV+FN++ARGYSRS P+ LFVE+L LLPD+Y+FP
Sbjct: 76 PTESSMSYARHLFDAMSEPDIVIFNSIARGYSRSTNPLEVFNLFVEILEDDLLPDNYTFP 135
Query: 127 SLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENIS 186
SLLKACA A+ALEEG+QLHC ++KLG++ N+YVC TLIN+Y EC DV+AAR +F+ I
Sbjct: 136 SLLKACAV--AKALEEGRQLHCLSMKLGVDDNVYVCPTLINMYTECEDVDAARCVFDRIV 193
Query: 187 EPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKW 246
EPCVV YNA+IT YAR +RPNEALSLFRE+Q +NLKP ++T+LS LSSCALLGSLDLGKW
Sbjct: 194 EPCVVCYNAMITGYARRNRPNEALSLFREMQGKNLKPNEITLLSVLSSCALLGSLDLGKW 253
Query: 247 IHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQ 306
IHEY KK+G KYVKVNTALIDM AKCG LDDAVS+F+NM KDTQAWSAMIVAYA HGQ
Sbjct: 254 IHEYAKKHGFCKYVKVNTALIDMFAKCGSLDDAVSIFENMRYKDTQAWSAMIVAYANHGQ 313
Query: 307 GHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYG 366
S+LMFE M V PDEITFLGLL ACSHTGLV+EG YF M ++GIVP IKHYG
Sbjct: 314 AENSMLMFERMRSENVQPDEITFLGLLNACSHTGLVEEGREYFSWMVHEFGIVPSIKHYG 373
Query: 367 CMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS 426
MVDLLGRAG L++AY FID+LPI TP+LWR LL++CSSHNNL LA++V ERI ELDDS
Sbjct: 374 SMVDLLGRAGHLEDAYEFIDKLPISPTPMLWRILLAACSSHNNLELAEKVSERILELDDS 433
Query: 427 HGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSY 486
HGGDYVILSNL AR +WE VD LRK+MKDR +KVPGCSSIEVNNVV EFFSGDGV S
Sbjct: 434 HGGDYVILSNLYARNKKWEAVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSA 493
Query: 487 STDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPG 546
+T L +ALDE+VKELK+ GYVPDTS+V H DM D+EKEI LRYHSEKLAI FGLLNTPPG
Sbjct: 494 TTKLHRALDEMVKELKLAGYVPDTSMVVHADMGDQEKEITLRYHSEKLAIAFGLLNTPPG 553
Query: 547 TTIRVVKNLRVC 558
TTIRVVKNLRVC
Sbjct: 554 TTIRVVKNLRVC 565
|
Source: Arabidopsis lyrata subsp. lyrata Species: Arabidopsis lyrata Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15227067|ref|NP_178398.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|218546779|sp|Q8LK93.2|PP145_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g02980 gi|3461822|gb|AAC32916.1| hypothetical protein [Arabidopsis thaliana] gi|330250557|gb|AEC05651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 780 bits (2014), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 374/540 (69%), Positives = 439/540 (81%), Gaps = 3/540 (0%)
Query: 19 TNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLL 78
NT N + L+ +C S R L QI A IK+H++ D++ + KLINFCT++PT SSM +A L
Sbjct: 27 VNTQNPILLISKCNSLRELMQIQAYAIKSHIE-DVSFVAKLINFCTESPTESSMSYARHL 85
Query: 79 FDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAE 138
F+ + EPDIV+FN+MARGYSR P+ LFVE+L G+LPD+Y+FPSLLKACA A+
Sbjct: 86 FEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAV--AK 143
Query: 139 ALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIIT 198
ALEEG+QLHC ++KLGL+ N+YVC TLIN+Y EC DV++AR +F+ I EPCVV YNA+IT
Sbjct: 144 ALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMIT 203
Query: 199 AYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDK 258
YAR +RPNEALSLFRE+Q + LKP ++T+LS LSSCALLGSLDLGKWIH+Y KK+ K
Sbjct: 204 GYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCK 263
Query: 259 YVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMM 318
YVKVNTALIDM AKCG LDDAVS+F+ M KDTQAWSAMIVAYA HG+ KS+LMFE M
Sbjct: 264 YVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMR 323
Query: 319 KAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRL 378
V PDEITFLGLL ACSHTG V+EG YF M K+GIVP IKHYG MVDLL RAG L
Sbjct: 324 SENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNL 383
Query: 379 DEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLC 438
++AY FID+LPI TP+LWR LL++CSSHNNL LA++V ERIFELDDSHGGDYVILSNL
Sbjct: 384 EDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGGDYVILSNLY 443
Query: 439 ARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELV 498
AR +WE VD LRK+MKDR +KVPGCSSIEVNNVV EFFSGDGV S +T L +ALDE+V
Sbjct: 444 ARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMV 503
Query: 499 KELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
KELK+ GYVPDTS+V H +M D+EKEI LRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC
Sbjct: 504 KELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 563
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|21780142|gb|AAM77644.1|AF517844_1 hypothetical protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 779 bits (2012), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 373/540 (69%), Positives = 438/540 (81%), Gaps = 3/540 (0%)
Query: 19 TNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLL 78
NT N + L+ +C S R L QI A IK+H++ D++ + KLINFCT++PT SSM +A L
Sbjct: 27 VNTQNPILLISKCNSLRELMQIQAYAIKSHIE-DVSFVAKLINFCTESPTESSMSYARHL 85
Query: 79 FDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAE 138
F+ + EPDIV+FN+MARGYSR P+ LFVE+L G+LPD+Y+FPSLLKACA A+
Sbjct: 86 FEAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAV--AK 143
Query: 139 ALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIIT 198
ALEEG+QLHC ++KLGL+ N+YVC TLIN+Y EC DV++AR +F+ I EPCVV YNA+IT
Sbjct: 144 ALEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARXVFDRIVEPCVVCYNAMIT 203
Query: 199 AYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDK 258
YAR +RPNEALSLFRE+Q + LKP ++T+LS LSSCALLGSLDLGKWIH+Y KK+ K
Sbjct: 204 GYARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCK 263
Query: 259 YVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMM 318
YVKVNTALIDM AKCG LDDAVS+F+ M KDTQAWSAMIVAYA HG+ KS+LMFE M
Sbjct: 264 YVKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMR 323
Query: 319 KAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRL 378
V PDEITFLGLL ACSHTG V+EG YF M K+GIVP IKHYG MVDLL AG L
Sbjct: 324 SENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSXAGNL 383
Query: 379 DEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLC 438
++AY FID+LPI TP+LWR LL++CSSHNNL LA++V ERIFELDDSHGGDYVILSNL
Sbjct: 384 EDAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGGDYVILSNLY 443
Query: 439 ARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELV 498
AR +WE VD LRK+MKDR +KVPGCSSIEVNNVV EFFSGDGV S +T L +ALDE+V
Sbjct: 444 ARNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMV 503
Query: 499 KELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
KELK+ GYVPDTS+V H +M D+EKEI LRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC
Sbjct: 504 KELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 563
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|125588235|gb|EAZ28899.1| hypothetical protein OsJ_12939 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
|---|
Score = 666 bits (1718), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 324/572 (56%), Positives = 419/572 (73%), Gaps = 22/572 (3%)
Query: 6 SPPITQSPPPKLCTNTPNA----------LSLLPRCTSFRGLKQIHAVTIKTH--LQNDL 53
S P+T +P P L + N L+ LP CTS R L Q+HAV +K LQ
Sbjct: 3 SSPLTATPSPLLPAKSKNPPPHHHHHNPLLAYLPHCTSLRALAQLHAVAVKAGGGLQAHP 62
Query: 54 NVLTKLINFCTQN--PTTSSMEHAHLLFDRIPEP-DIVLFNTMARGYSRSKTPI----RA 106
+T+L+ CT+ + + +A +FDRIP P D+V +NT+ RGY+R A
Sbjct: 63 AFVTRLLTLCTEQGAEAPAHLAYARQVFDRIPHPGDVVWYNTLLRGYARGGWGGGCAEEA 122
Query: 107 IFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLI 166
+FV ++ G+ PD Y+F SLLKACA A A EEG+Q H A+K G + YV TLI
Sbjct: 123 ARVFVRMMEEGVAPDTYTFVSLLKACA--SARAGEEGRQAHGVAVKAGAAEHEYVAPTLI 180
Query: 167 NLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDV 226
N+YAEC DV AAR +F+ + CVVSYNA+ITA RSS P EAL LFRE+Q + LKPT V
Sbjct: 181 NMYAECGDVRAARVMFDRMDGECVVSYNAMITASVRSSLPGEALVLFREMQAKGLKPTSV 240
Query: 227 TMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNM 286
T++S LS+CALLG+L+LG+WIH+YI+K LD VKVNTALIDM+AKCG L+DA+ VF +M
Sbjct: 241 TLISVLSACALLGALELGRWIHDYIRKMRLDSLVKVNTALIDMYAKCGSLEDAIGVFQDM 300
Query: 287 SGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGW 346
+D QAWS M+VAYA HG G ++I MFEEM K + PD++TFLG+LYACSH+G+V EG
Sbjct: 301 ESRDKQAWSVMMVAYANHGYGREAISMFEEMKKQGMKPDDVTFLGVLYACSHSGMVSEGL 360
Query: 347 NYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSS 406
YF SMR+ YGIV GIKHYGC+ DLL R+G+L+ AY+FIDELPIK T ILWRTLLS+C+
Sbjct: 361 QYFDSMRE-YGIVSGIKHYGCVTDLLARSGQLERAYKFIDELPIKPTAILWRTLLSACAG 419
Query: 407 HNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCS 466
H ++ + K+V ERI ELDDSHGGDYVI SNLCA GRWE+++ +RKLM ++GV+KVPGCS
Sbjct: 420 HGDVDMGKRVFERILELDDSHGGDYVIFSNLCANTGRWEEMNMVRKLMSEKGVVKVPGCS 479
Query: 467 SIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIA 526
SIE++N+V EFF+GDG H +S + ++ +DE++++LK+VGYVP+TS V H +M +EEK +
Sbjct: 480 SIEIDNMVHEFFAGDGSHPHSQEARRMVDEVIEQLKLVGYVPNTSHVFHVEMGEEEKATS 539
Query: 527 LRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
LRYHSEKLAI+FGLLNT PGTT+R+VKNLRVC
Sbjct: 540 LRYHSEKLAISFGLLNTAPGTTLRIVKNLRVC 571
|
Source: Oryza sativa Japonica Group Species: Oryza sativa Genus: Oryza Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|357111415|ref|XP_003557509.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02980-like [Brachypodium distachyon] | Back alignment and taxonomy information |
|---|
Score = 663 bits (1710), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 325/576 (56%), Positives = 412/576 (71%), Gaps = 26/576 (4%)
Query: 6 SPPITQSPPPKLCTNTPNA-------------LSLLPRCTSFRGLKQIHAVTIKTHLQND 52
SPP+ +P P L + L LP+CT+ R L Q+HA +K+ LQ
Sbjct: 3 SPPLAATPTPFLLPAKSKSPLAAAPAAQQHPLLPYLPQCTTLRALAQLHAAAVKSGLQAH 62
Query: 53 LNVLTKLINFCTQNPTT--SSMEHAHLLFDRIPEP-DIVLFNTMARGYSR------SKTP 103
+T+L+ CT + + +A +FDRIP P D+V +NT+ RGY+R ++ P
Sbjct: 63 PAFVTRLLTLCTDQGAAKPAQLSYARQVFDRIPGPGDVVWYNTLLRGYARCSAAGGARPP 122
Query: 104 IR-AIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVC 162
A +FV +L G+ PD Y+F SLLKACA A A EEG+Q H A+K+G + YV
Sbjct: 123 AEEAARVFVRMLEEGVAPDTYTFVSLLKACA--AARAGEEGRQAHGVAVKVGAAEHEYVL 180
Query: 163 TTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLK 222
TLIN+YAEC D AAR +F + CVVSYNA+ITA RSSRP EAL LFRE+Q + LK
Sbjct: 181 PTLINMYAECGDARAARTMFGRVDGECVVSYNAMITAAVRSSRPGEALVLFREMQAKGLK 240
Query: 223 PTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSV 282
T VT++S LS+CALLG+L+LG+WIHEY++K LD VKVNTALIDM+ KCG L+DA+SV
Sbjct: 241 LTSVTLISVLSACALLGALELGRWIHEYVRKVQLDSLVKVNTALIDMYGKCGSLEDAISV 300
Query: 283 FDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLV 342
F M +D QAWS MIVAYA H G ++I +FEEM K + PD++TFLG+LYACSH+GLV
Sbjct: 301 FQGMESRDRQAWSVMIVAYANHSYGREAISLFEEMKKQGIKPDDVTFLGVLYACSHSGLV 360
Query: 343 DEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLS 402
EG YF SMR+ +G+VPGIKHYGC+ DLL R+G+LD AY FIDELPIK T ILWRTLLS
Sbjct: 361 SEGLQYFDSMRE-FGLVPGIKHYGCVADLLARSGQLDRAYEFIDELPIKPTAILWRTLLS 419
Query: 403 SCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKV 462
+C S + L KQV ERI ELDDSHGGDYVI SNLCA GRWE+++ +RKLM ++GV+KV
Sbjct: 420 ACGSRGDADLGKQVFERILELDDSHGGDYVIFSNLCANTGRWEEMNRVRKLMNEKGVVKV 479
Query: 463 PGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEE 522
PGCSSIEV+N V EFF+GDG H S D ++ +D ++++LK+ GYVP+TS V H +M +EE
Sbjct: 480 PGCSSIEVDNRVHEFFAGDGRHPKSLDARRMVDGVIEQLKLAGYVPNTSHVFHVEMGEEE 539
Query: 523 KEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
K ++LRYHSEKLAI+FGLLNT PGTT+RVVKNLRVC
Sbjct: 540 KAVSLRYHSEKLAISFGLLNTSPGTTLRVVKNLRVC 575
|
Source: Brachypodium distachyon Species: Brachypodium distachyon Genus: Brachypodium Family: Poaceae Order: Poales Class: Liliopsida Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 558 | ||||||
| TAIR|locus:2056740 | 603 | OTP85 "ORGANELLE TRANSCRIPT PR | 0.960 | 0.888 | 0.666 | 5.7e-194 | |
| TAIR|locus:2019160 | 643 | AT1G74630 [Arabidopsis thalian | 0.697 | 0.604 | 0.408 | 7e-113 | |
| TAIR|locus:2202074 | 809 | CRR22 "CHLORORESPIRATORY REDUC | 0.944 | 0.651 | 0.400 | 1.1e-105 | |
| TAIR|locus:4010713895 | 595 | AT4G21065 "AT4G21065" [Arabido | 0.939 | 0.880 | 0.397 | 3.6e-105 | |
| TAIR|locus:4010713776 | 659 | AT3G26782 [Arabidopsis thalian | 0.928 | 0.786 | 0.406 | 3.7e-103 | |
| TAIR|locus:2205200 | 741 | OTP82 "AT1G08070" [Arabidopsis | 0.867 | 0.653 | 0.402 | 1.2e-99 | |
| TAIR|locus:2057574 | 583 | AT2G33760 [Arabidopsis thalian | 0.922 | 0.883 | 0.368 | 1.7e-98 | |
| TAIR|locus:2056794 | 630 | REME1 "required for efficiency | 0.858 | 0.760 | 0.371 | 8.7e-95 | |
| TAIR|locus:2032955 | 790 | AT1G25360 "AT1G25360" [Arabido | 0.706 | 0.498 | 0.390 | 1.6e-94 | |
| TAIR|locus:2025946 | 638 | CRR28 "CHLORORESPIRATORY REDUC | 0.949 | 0.830 | 0.369 | 4.8e-94 |
| TAIR|locus:2056740 OTP85 "ORGANELLE TRANSCRIPT PROCESSING 85" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1879 (666.5 bits), Expect = 5.7e-194, P = 5.7e-194
Identities = 359/539 (66%), Positives = 424/539 (78%)
Query: 20 NTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLF 79
NT N + L+ +C S R L QI A IK+H++ D++ + KLINFCT++PT SSM +A LF
Sbjct: 28 NTQNPILLISKCNSLRELMQIQAYAIKSHIE-DVSFVAKLINFCTESPTESSMSYARHLF 86
Query: 80 DRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEA 139
+ + EPDIV+FN+MARGYSR P+ LFVE+L G+LPD+Y+FPSLLKACA A+A
Sbjct: 87 EAMSEPDIVIFNSMARGYSRFTNPLEVFSLFVEILEDGILPDNYTFPSLLKACAV--AKA 144
Query: 140 LEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITA 199
LEEG+QLHC ++KLGL+ N+YVC TLIN+Y EC DV++AR +F+ I EPCVV YNA+IT
Sbjct: 145 LEEGRQLHCLSMKLGLDDNVYVCPTLINMYTECEDVDSARCVFDRIVEPCVVCYNAMITG 204
Query: 200 YARSSRPNEALSLFRELQERNLKPTDVTMXXXXXXXXXXXXXXXXKWIHEYIKKYGLDKY 259
YAR +RPNEALSLFRE+Q + LKP ++T+ KWIH+Y KK+ KY
Sbjct: 205 YARRNRPNEALSLFREMQGKYLKPNEITLLSVLSSCALLGSLDLGKWIHKYAKKHSFCKY 264
Query: 260 VKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMK 319
VKVNTALIDM AKCG LDDAVS+F+ M KDTQAWSAMIVAYA HG+ KS+LMFE M
Sbjct: 265 VKVNTALIDMFAKCGSLDDAVSIFEKMRYKDTQAWSAMIVAYANHGKAEKSMLMFERMRS 324
Query: 320 AQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLD 379
V PDEITFLGLL ACSHTG V+EG YF M K+GIVP IKHYG MVDLL RAG L+
Sbjct: 325 ENVQPDEITFLGLLNACSHTGRVEEGRKYFSQMVSKFGIVPSIKHYGSMVDLLSRAGNLE 384
Query: 380 EAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCA 439
+AY FID+LPI TP+LWR LL++CSSHNNL LA++V ERIFELDDSHGGDYVILSNL A
Sbjct: 385 DAYEFIDKLPISPTPMLWRILLAACSSHNNLDLAEKVSERIFELDDSHGGDYVILSNLYA 444
Query: 440 RAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVK 499
R +WE VD LRK+MKDR +KVPGCSSIEVNNVV EFFSGDGV S +T L +ALDE+VK
Sbjct: 445 RNKKWEYVDSLRKVMKDRKAVKVPGCSSIEVNNVVHEFFSGDGVKSATTKLHRALDEMVK 504
Query: 500 ELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
ELK+ GYVPDTS+V H +M D+EKEI LRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC
Sbjct: 505 ELKLSGYVPDTSMVVHANMNDQEKEITLRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 563
|
|
| TAIR|locus:2019160 AT1G74630 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 790 (283.2 bits), Expect = 7.0e-113, Sum P(2) = 7.0e-113
Identities = 160/392 (40%), Positives = 237/392 (60%)
Query: 169 YAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTM 228
Y + ++E+A+RIF + VS++ +I A + NE+ FRELQ + P +V++
Sbjct: 213 YIKAGELESAKRIFSEMPHRDDVSWSTMIVGIAHNGSFNESFLYFRELQRAGMSPNEVSL 272
Query: 229 XXXXXXXXXXXXXXXXKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSG 288
K +H +++K G V VN ALIDM+++CG + A VF+ M
Sbjct: 273 TGVLSACSQSGSFEFGKILHGFVEKAGYSWIVSVNNALIDMYSRCGNVPMARLVFEGMQE 332
Query: 289 KDT-QAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWN 347
K +W++MI A HGQG +++ +F EM V+PD I+F+ LL+ACSH GL++EG +
Sbjct: 333 KRCIVSWTSMIAGLAMHGQGEEAVRLFNEMTAYGVTPDGISFISLLHACSHAGLIEEGED 392
Query: 348 YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSH 407
YF M+ Y I P I+HYGCMVDL GR+G+L +AY FI ++PI T I+WRTLL +CSSH
Sbjct: 393 YFSEMKRVYHIEPEIEHYGCMVDLYGRSGKLQKAYDFICQMPIPPTAIVWRTLLGACSSH 452
Query: 408 NNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSS 467
N+ LA+QV +R+ ELD ++ GD V+LSN A AG+W+DV +RK M + + K S
Sbjct: 453 GNIELAEQVKQRLNELDPNNSGDLVLLSNAYATAGKWKDVASIRKSMIVQRIKKTTAWSL 512
Query: 468 IEVNNVVREFFSGDGVHSYSTDLQKALDELVKELK-MVGYVPDTSLVHHGDMEDEEKEIA 526
+EV + +F +G+ + + L E++ LK GY P+ + + D+E+EEKE
Sbjct: 513 VEVGKTMYKFTAGEKKKGIDIEAHEKLKEIILRLKDEAGYTPEVASALY-DVEEEEKEDQ 571
Query: 527 LRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
+ HSEKLA+ F L G IR+VKNLR+C
Sbjct: 572 VSKHSEKLALAFALARLSKGANIRIVKNLRIC 603
|
|
| TAIR|locus:2202074 CRR22 "CHLORORESPIRATORY REDUCTION22" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1046 (373.3 bits), Expect = 1.1e-105, P = 1.1e-105
Identities = 215/537 (40%), Positives = 327/537 (60%)
Query: 25 LSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR 81
+S+LP ++ R + K+IH +++ + +N+ T L++ + S+E A LFD
Sbjct: 240 VSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAK---CGSLETARQLFDG 296
Query: 82 IPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALE 141
+ E ++V +N+M Y +++ P A+ +F ++L+ G+ P D S L ACA +G LE
Sbjct: 297 MLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGD--LE 354
Query: 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYA 201
G+ +H +++LGL+ N+ V +LI++Y +C +V+ A +F + +VS+NA+I +A
Sbjct: 355 RGRFIHKLSVELGLDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFA 414
Query: 202 RSSRPNEALSLFRELQERNLKPTDVTMXXXXXXXXXXXXXXXXKWIHEYIKKYGLDKYVK 261
++ RP +AL+ F +++ R +KP T KWIH + + LDK V
Sbjct: 415 QNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRSCLDKNVF 474
Query: 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321
V TAL+DM+AKCG + A +FD MS + W+AMI Y THG G ++ +FEEM K
Sbjct: 475 VTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGT 534
Query: 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381
+ P+ +TFL ++ ACSH+GLV+ G FY M++ Y I + HYG MVDLLGRAGRL+EA
Sbjct: 535 IKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEA 594
Query: 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARA 441
+ FI ++P+K ++ +L +C H N+ A++ ER+FEL+ GG +V+L+N+ A
Sbjct: 595 WDFIMQMPVKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAA 654
Query: 442 GRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKEL 501
WE V +R M +G+ K PGCS +E+ N V FFSG H S + L++L+ +
Sbjct: 655 SMWEKVGQVRVSMLRQGLRKTPGCSMVEIKNEVHSFFSGSTAHPDSKKIYAFLEKLICHI 714
Query: 502 KMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
K GYVPDT+LV G +E++ KE L HSEKLAI+FGLLNT GTTI V KNLRVC
Sbjct: 715 KEAGYVPDTNLVL-G-VENDVKEQLLSTHSEKLAISFGLLNTTAGTTIHVRKNLRVC 769
|
|
| TAIR|locus:4010713895 AT4G21065 "AT4G21065" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1041 (371.5 bits), Expect = 3.6e-105, P = 3.6e-105
Identities = 211/531 (39%), Positives = 331/531 (62%)
Query: 32 TSFRGLKQIHAVTIKTHLQ-NDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEP-DIVL 89
+S L+QIHA +I+ + +D + LI + P+ M +AH +F +I +P ++ +
Sbjct: 28 SSITKLRQIHAFSIRHGVSISDAELGKHLIFYLVSLPSPPPMSYAHKVFSKIEKPINVFI 87
Query: 90 FNTMARGYSRSKTPIRAIFLFVELLNSGLL-PDDYSFPSLLKACACVGAEALEEGKQLHC 148
+NT+ RGY+ I A L+ E+ SGL+ PD +++P L+KA + L G+ +H
Sbjct: 88 WNTLIRGYAEIGNSISAFSLYREMRVSGLVEPDTHTYPFLIKAVTTMADVRL--GETIHS 145
Query: 149 FAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNE 208
I+ G S +YV +L++LYA C DV +A ++F+ + E +V++N++I +A + +P E
Sbjct: 146 VVIRSGFGSLIYVQNSLLHLYANCGDVASAYKVFDKMPEKDLVAWNSVINGFAENGKPEE 205
Query: 209 ALSLFRELQERNLKPTDVTMXXXXXXXXXXXXXXXXKWIHEYIKKYGLDKYVKVNTALID 268
AL+L+ E+ + +KP T+ K +H Y+ K GL + + + L+D
Sbjct: 206 ALALYTEMNSKGIKPDGFTIVSLLSACAKIGALTLGKRVHVYMIKVGLTRNLHSSNVLLD 265
Query: 269 MHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ-VSPDEI 327
++A+CGR+++A ++FD M K++ +W+++IV A +G G ++I +F+ M + + P EI
Sbjct: 266 LYARCGRVEEAKTLFDEMVDKNSVSWTSLIVGLAVNGFGKEAIELFKYMESTEGLLPCEI 325
Query: 328 TFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDE 387
TF+G+LYACSH G+V EG+ YF MR++Y I P I+H+GCMVDLL RAG++ +AY +I
Sbjct: 326 TFVGILYACSHCGMVKEGFEYFRRMREEYKIEPRIEHFGCMVDLLARAGQVKKAYEYIKS 385
Query: 388 LPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDV 447
+P++ ++WRTLL +C+ H + LA+ +I +L+ +H GDYV+LSN+ A RW DV
Sbjct: 386 MPMQPNVVIWRTLLGACTVHGDSDLAEFARIQILQLEPNHSGDYVLLSNMYASEQRWSDV 445
Query: 448 DYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYV 507
+RK M GV KVPG S +EV N V EF GD H S + L E+ L+ GYV
Sbjct: 446 QKIRKQMLRDGVKKVPGHSLVEVGNRVHEFLMGDKSHPQSDAIYAKLKEMTGRLRSEGYV 505
Query: 508 PDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
P S V+ D+E+EEKE A+ YHSEK+AI F L++TP + I VVKNLRVC
Sbjct: 506 PQISNVYV-DVEEEEKENAVVYHSEKIAIAFMLISTPERSPITVVKNLRVC 555
|
|
| TAIR|locus:4010713776 AT3G26782 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1022 (364.8 bits), Expect = 3.7e-103, P = 3.7e-103
Identities = 217/534 (40%), Positives = 323/534 (60%)
Query: 34 FRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTM 93
F G KQ H Q+D+ V + LI T +E A +FD IP+ +IV + +M
Sbjct: 93 FSG-KQTHQQAFVFGYQSDIFVSSALI---VMYSTCGKLEDARKVFDEIPKRNIVSWTSM 148
Query: 94 ARGYSRSKTPIRAIFLFVELL------NSGLLPDDYSFPSLLKACACVGAEALEEGKQLH 147
RGY + + A+ LF +LL + + D S++ AC+ V A+ L E +H
Sbjct: 149 IRGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTES--IH 206
Query: 148 CFAIKLGLNSNLYVCTTLINLYAECSD--VEAARRIFENISEPCVVSYNAIITAYARSSR 205
F IK G + + V TL++ YA+ + V AR+IF+ I + VSYN+I++ YA+S
Sbjct: 207 SFVIKRGFDRGVSVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGM 266
Query: 206 PNEALSLFRELQERNLKPTD-VTMXXXXXXXXXXXXXXXXKWIHEYIKKYGLDKYVKVNT 264
NEA +FR L + + + +T+ K IH+ + + GL+ V V T
Sbjct: 267 SNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLEDDVIVGT 326
Query: 265 ALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP 324
++IDM+ KCGR++ A FD M K+ ++W+AMI Y HG K++ +F M+ + V P
Sbjct: 327 SIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRP 386
Query: 325 DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRF 384
+ ITF+ +L ACSH GL EGW +F +M+ ++G+ PG++HYGCMVDLLGRAG L +AY
Sbjct: 387 NYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDL 446
Query: 385 IDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRW 444
I + +K I+W +LL++C H N+ LA+ + R+FELD S+ G Y++LS++ A AGRW
Sbjct: 447 IQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAGRW 506
Query: 445 EDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMV 504
+DV+ +R +MK+RG++K PG S +E+N V F GD H + + L EL ++L
Sbjct: 507 KDVERVRMIMKNRGLVKPPGFSLLELNGEVHVFLIGDEEHPQREKIYEFLAELNRKLLEA 566
Query: 505 GYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
GYV +TS V H D+++EEKE+ LR HSEKLAI FG++NT PG+T+ VVKNLRVC
Sbjct: 567 GYVSNTSSVCH-DVDEEEKEMTLRVHSEKLAIAFGIMNTVPGSTVNVVKNLRVC 619
|
|
| TAIR|locus:2205200 OTP82 "AT1G08070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 989 (353.2 bits), Expect = 1.2e-99, P = 1.2e-99
Identities = 197/489 (40%), Positives = 299/489 (61%)
Query: 72 MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
+E+A LFD IP D+V +N M GY+ + A+ LF +++ + + PD+ + +++ A
Sbjct: 216 IENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSA 275
Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV 191
CA G+ +E G+Q+H + G SNL + LI+LY++C ++E A +FE + V+
Sbjct: 276 CAQSGS--IELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGELETACGLFERLPYKDVI 333
Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMXXXXXXXXXXXXXXXXKWIHEYI 251
S+N +I Y + EAL LF+E+ P DVTM +WIH YI
Sbjct: 334 SWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYI 393
Query: 252 KKY--GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHK 309
K G+ + T+LIDM+AKCG ++ A VF+++ K +W+AMI +A HG+
Sbjct: 394 DKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADA 453
Query: 310 SILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMV 369
S +F M K + PD+ITF+GLL ACSH+G++D G + F +M Y + P ++HYGCM+
Sbjct: 454 SFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMI 513
Query: 370 DLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGG 429
DLLG +G EA I+ + ++ ++W +LL +C H N+ L + E + +++ + G
Sbjct: 514 DLLGHSGLFKEAEEMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPG 573
Query: 430 DYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTD 489
YV+LSN+ A AGRW +V R L+ D+G+ KVPGCSSIE+++VV EF GD H + +
Sbjct: 574 SYVLLSNIYASAGRWNEVAKTRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNRE 633
Query: 490 LQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTI 549
+ L+E+ L+ G+VPDTS V +ME+E KE ALR+HSEKLAI FGL++T PGT +
Sbjct: 634 IYGMLEEMEVLLEKAGFVPDTSEVLQ-EMEEEWKEGALRHHSEKLAIAFGLISTKPGTKL 692
Query: 550 RVVKNLRVC 558
+VKNLRVC
Sbjct: 693 TIVKNLRVC 701
|
|
| TAIR|locus:2057574 AT2G33760 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 978 (349.3 bits), Expect = 1.7e-98, P = 1.7e-98
Identities = 194/526 (36%), Positives = 312/526 (59%)
Query: 37 LKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARG 96
L+Q+HA I T ++LTKLI + ++ + HLLF +P PD LFN++ +
Sbjct: 25 LQQVHAHLIVTGYGRSRSLLTKLITLAC---SARAIAYTHLLFLSVPLPDDFLFNSVIKS 81
Query: 97 YSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLN 156
S+ + P+ + + +L+S + P +Y+F S++K+CA + A L GK +HC A+ G
Sbjct: 82 TSKLRLPLHCVAYYRRMLSSNVSPSNYTFTSVIKSCADLSA--LRIGKGVHCHAVVSGFG 139
Query: 157 SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFREL 216
+ YV L+ Y++C D+E AR++F+ + E +V++N++++ + ++ +EA+ +F ++
Sbjct: 140 LDTYVQAALVTFYSKCGDMEGARQVFDRMPEKSIVAWNSLVSGFEQNGLADEAIQVFYQM 199
Query: 217 QERNLKPTDVTMXXXXXXXXXXXXXXXXKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRL 276
+E +P T W+H+YI GLD VK+ TALI+++++CG +
Sbjct: 200 RESGFEPDSATFVSLLSACAQTGAVSLGSWVHQYIISEGLDLNVKLGTALINLYSRCGDV 259
Query: 277 DDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMK-AQVSPDEITFLGLLYA 335
A VFD M + AW+AMI AY THG G +++ +F +M P+ +TF+ +L A
Sbjct: 260 GKAREVFDKMKETNVAAWTAMISAYGTHGYGQQAVELFNKMEDDCGPIPNNVTFVAVLSA 319
Query: 336 CSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPI--KST 393
C+H GLV+EG + + M Y ++PG++H+ CMVD+LGRAG LDEAY+FI +L K+T
Sbjct: 320 CAHAGLVEEGRSVYKRMTKSYRLIPGVEHHVCMVDMLGRAGFLDEAYKFIHQLDATGKAT 379
Query: 394 -PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRK 452
P LW +L +C H N L ++ +R+ L+ + G +V+LSN+ A +G+ ++V ++R
Sbjct: 380 APALWTAMLGACKMHRNYDLGVEIAKRLIALEPDNPGHHVMLSNIYALSGKTDEVSHIRD 439
Query: 453 LMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSL 512
M + K G S IEV N F GD H + ++ + L+ L+ K +GY P +
Sbjct: 440 GMMRNNLRKQVGYSVIEVENKTYMFSMGDESHQETGEIYRYLETLISRCKEIGYAPVSEE 499
Query: 513 VHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
V H +E+EEKE ALRYHSEKLA+ FGLL T I +VKNLR+C
Sbjct: 500 VMH-QVEEEEKEFALRYHSEKLAVAFGLLKTVD-VAITIVKNLRIC 543
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| TAIR|locus:2056794 REME1 "required for efficiency of mitochondrial editing 1" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 943 (337.0 bits), Expect = 8.7e-95, P = 8.7e-95
Identities = 181/487 (37%), Positives = 293/487 (60%)
Query: 72 MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
+ AH LFD++P+ +++ + TM YS+ K +A+ L V +L + P+ Y++ S+L++
Sbjct: 112 LNDAHQLFDQMPQRNVISWTTMISAYSKCKIHQKALELLVLMLRDNVRPNVYTYSSVLRS 171
Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV 191
C + + + LHC IK GL S+++V + LI+++A+ + E A +F+ + +
Sbjct: 172 C-----NGMSDVRMLHCGIIKEGLESDVFVRSALIDVFAKLGEPEDALSVFDEMVTGDAI 226
Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMXXXXXXXXXXXXXXXXKWIHEYI 251
+N+II +A++SR + AL LF+ ++ T+ H +I
Sbjct: 227 VWNSIIGGFAQNSRSDVALELFKRMKRAGFIAEQATLTSVLRACTGLALLELGMQAHVHI 286
Query: 252 KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSI 311
KY D+ + +N AL+DM+ KCG L+DA+ VF+ M +D WS MI A +G +++
Sbjct: 287 VKY--DQDLILNNALVDMYCKCGSLEDALRVFNQMKERDVITWSTMISGLAQNGYSQEAL 344
Query: 312 LMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDL 371
+FE M + P+ IT +G+L+ACSH GL+++GW YF SM+ YGI P +HYGCM+DL
Sbjct: 345 KLFERMKSSGTKPNYITIVGVLFACSHAGLLEDGWYYFRSMKKLYGIDPVREHYGCMIDL 404
Query: 372 LGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDY 431
LG+AG+LD+A + ++E+ + + WRTLL +C N+ LA+ +++ LD G Y
Sbjct: 405 LGKAGKLDDAVKLLNEMECEPDAVTWRTLLGACRVQRNMVLAEYAAKKVIALDPEDAGTY 464
Query: 432 VILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQ 491
+LSN+ A + +W+ V+ +R M+DRG+ K PGCS IEVN + F GD H ++
Sbjct: 465 TLLSNIYANSQKWDSVEEIRTRMRDRGIKKEPGCSWIEVNKQIHAFIIGDNSHPQIVEVS 524
Query: 492 KALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRV 551
K L++L+ L +GYVP+T+ V D+E E+ E +LR+HSEKLA+ FGL+ P IR+
Sbjct: 525 KKLNQLIHRLTGIGYVPETNFVLQ-DLEGEQMEDSLRHHSEKLALAFGLMTLPIEKVIRI 583
Query: 552 VKNLRVC 558
KNLR+C
Sbjct: 584 RKNLRIC 590
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| TAIR|locus:2032955 AT1G25360 "AT1G25360" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 748 (268.4 bits), Expect = 1.6e-94, Sum P(2) = 1.6e-94
Identities = 154/394 (39%), Positives = 218/394 (55%)
Query: 165 LINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPT 224
L++ Y + A+ IF+ + E ++S+ +I+ A + E L LF ++ +P
Sbjct: 357 LLSGYVSSGHIGEAKLIFKEMKEKNILSWMIMISGLAENGFGEEGLKLFSCMKREGFEPC 416
Query: 225 DVTMXXXXXXXXXXXXXXXXKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFD 284
D + H + K G D + ALI M+AKCG +++A VF
Sbjct: 417 DYAFSGAIKSCAVLGAYCNGQQYHAQLLKIGFDSSLSAGNALITMYAKCGVVEEARQVFR 476
Query: 285 NMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDE 344
M D+ +W+A+I A HG G +++ ++EEM+K + PD IT L +L ACSH GLVD+
Sbjct: 477 TMPCLDSVSWNALIAALGQHGHGAEAVDVYEEMLKKGIRPDRITLLTVLTACSHAGLVDQ 536
Query: 345 GWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSC 404
G YF SM Y I PG HY ++DLL R+G+ +A I+ LP K T +W LLS C
Sbjct: 537 GRKYFDSMETVYRIPPGADHYARLIDLLCRSGKFSDAESVIESLPFKPTAEIWEALLSGC 596
Query: 405 SSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPG 464
H N+ L +++F L H G Y++LSN+ A G+WE+V +RKLM+DRGV K
Sbjct: 597 RVHGNMELGIIAADKLFGLIPEHDGTYMLLSNMHAATGQWEEVARVRKLMRDRGVKKEVA 656
Query: 465 CSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEKE 524
CS IE+ V F D H + + L +L KE++ +GYVPDTS V H D KE
Sbjct: 657 CSWIEMETQVHTFLVDDTSHPEAEAVYIYLQDLGKEMRRLGYVPDTSFVLHDVESDGHKE 716
Query: 525 IALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
L HSEK+A+ FGL+ PPGTTIR+ KNLR C
Sbjct: 717 DMLTTHSEKIAVAFGLMKLPPGTTIRIFKNLRTC 750
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| TAIR|locus:2025946 CRR28 "CHLORORESPIRATORY REDUCTION28" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 936 (334.5 bits), Expect = 4.8e-94, P = 4.8e-94
Identities = 203/549 (36%), Positives = 309/549 (56%)
Query: 26 SLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEP 85
SL C+ LKQ+HA T++T + L + + S + +A +FD I
Sbjct: 53 SLAETCSDMSQLKQLHAFTLRTTYPEEPATLFLYGKILQLSSSFSDVNYAFRVFDSIENH 112
Query: 86 DIVLFNTMARGYSRSKT-PIRAIFLFVELLNSG-LLPDDYSFPSLLKACACVGAEALEEG 143
++NT+ R + + A L+ ++L G PD ++FP +LKACA + EG
Sbjct: 113 SSFMWNTLIRACAHDVSRKEEAFMLYRKMLERGESSPDKHTFPFVLKACAYIFG--FSEG 170
Query: 144 KQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARS 203
KQ+HC +K G ++YV LI+LY C ++ AR++F+ + E +VS+N++I A R
Sbjct: 171 KQVHCQIVKHGFGGDVYVNNGLIHLYGSCGCLDLARKVFDEMPERSLVSWNSMIDALVRF 230
Query: 204 SRPNEALSLFRELQERNLKPTDVTMXXXXXXXXXXXXXXXXKWIHEYI-KKYGLDKY--V 260
+ AL LFRE+Q R+ +P TM W H ++ +K +D V
Sbjct: 231 GEYDSALQLFREMQ-RSFEPDGYTMQSVLSACAGLGSLSLGTWAHAFLLRKCDVDVAMDV 289
Query: 261 KVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMM-- 318
V +LI+M+ KCG L A VF M +D +W+AMI+ +ATHG+ +++ F+ M+
Sbjct: 290 LVKNSLIEMYCKCGSLRMAEQVFQGMQKRDLASWNAMILGFATHGRAEEAMNFFDRMVDK 349
Query: 319 KAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRL 378
+ V P+ +TF+GLL AC+H G V++G YF M Y I P ++HYGC+VDL+ RAG +
Sbjct: 350 RENVRPNSVTFVGLLIACNHRGFVNKGRQYFDMMVRDYCIEPALEHYGCIVDLIARAGYI 409
Query: 379 DEAYRFIDELPIKSTPILWRTLLSSCSSHN-NLGLAKQVIERIF----ELDDSHG---GD 430
EA + +P+K ++WR+LL +C ++ L++++ I + + S+G G
Sbjct: 410 TEAIDMVMSMPMKPDAVIWRSLLDACCKKGASVELSEEIARNIIGTKEDNESSNGNCSGA 469
Query: 431 YVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDL 490
YV+LS + A A RW DV +RKLM + G+ K PGCSSIE+N + EFF+GD H + +
Sbjct: 470 YVLLSRVYASASRWNDVGIVRKLMSEHGIRKEPGCSSIEINGISHEFFAGDTSHPQTKQI 529
Query: 491 QKALDELVKELKMVGYVPDTSLVHHGDM-EDEEKEIALRYHSEKLAITFGLLNTPPGTTI 549
+ L + L+ +GY+PD S D D KE +LR HSE+LAI FGL+N PP T I
Sbjct: 530 YQQLKVIDDRLRSIGYLPDRSQAPLVDATNDGSKEYSLRLHSERLAIAFGLINLPPQTPI 589
Query: 550 RVVKNLRVC 558
R+ KNLRVC
Sbjct: 590 RIFKNLRVC 598
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q8LK93 | PP145_ARATH | No assigned EC number | 0.6925 | 0.9623 | 0.8905 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
| Your Input: |  |
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 | GSVIVG00036951001 | SubName- Full=Chromosome chr1 scaffold_84, whole genome shotgun sequence; (595 aa) | |||||||||
(Vitis vinifera) | |||||||||||
Predicted Functional Partners: | |||||||||||
| Sorry, there are no predicted associations at the current settings. | |||||||||||
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 558 | |||
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-133 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 1e-129 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-52 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-50 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 9e-36 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 7e-28 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 3e-26 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-16 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-15 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 3e-12 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 9e-11 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 1e-09 | |
| pfam14432 | 116 | pfam14432, DYW_deaminase, DYW family of nucleic ac | 3e-06 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 8e-06 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 1e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-05 | |
| pfam13812 | 34 | pfam13812, PPR_3, Pentatricopeptide repeat domain | 3e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.002 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 407 bits (1047), Expect = e-133
Identities = 194/523 (37%), Positives = 305/523 (58%), Gaps = 13/523 (2%)
Query: 38 KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
+++H +KT D++V LI + S A +F R+ D V + M GY
Sbjct: 308 REMHGYVVKTGFAVDVSVCNSLIQMYL---SLGSWGEAEKVFSRMETKDAVSWTAMISGY 364
Query: 98 SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
++ P +A+ + + + PD+ + S+L ACAC+G L+ G +LH A + GL S
Sbjct: 365 EKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGD--LDVGVKLHELAERKGLIS 422
Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
+ V LI +Y++C ++ A +F NI E V+S+ +II ++R EAL FR++
Sbjct: 423 YVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQML 482
Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK--YGLDKYVKVNTALIDMHAKCGR 275
LKP VT+++ALS+CA +G+L GK IH ++ + G D ++ AL+D++ +CGR
Sbjct: 483 -LTLKPNSVTLIAALSACARIGALMCGKEIHAHVLRTGIGFDGFLP--NALLDLYVRCGR 539
Query: 276 LDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYA 335
++ A + F N KD +W+ ++ Y HG+G ++ +F M+++ V+PDE+TF+ LL A
Sbjct: 540 MNYAWNQF-NSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCA 598
Query: 336 CSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPI 395
CS +G+V +G YF+SM +KY I P +KHY C+VDLLGRAG+L EAY FI+++PI P
Sbjct: 599 CSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPA 658
Query: 396 LWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMK 455
+W LL++C H ++ L + + IFELD + G Y++L NL A AG+W++V +RK M+
Sbjct: 659 VWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMR 718
Query: 456 DRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHH 515
+ G+ PGCS +EV V F + D H ++ L+ +++K G S
Sbjct: 719 ENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEINTVLEGFYEKMKASGL--AGSESSS 776
Query: 516 GDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558
D + K+ HSE+LAI FGL+NT PG I V KNL +C
Sbjct: 777 MDEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMC 819
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Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 393 bits (1011), Expect = e-129
Identities = 172/488 (35%), Positives = 283/488 (57%), Gaps = 5/488 (1%)
Query: 72 MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA 131
+ A LFD +PE ++ + T+ G + A LF E+ G + +F +L+A
Sbjct: 174 LIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRA 233
Query: 132 CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV 191
A +G+ G+QLHC +K G+ + +V LI++Y++C D+E AR +F+ + E V
Sbjct: 234 SAGLGS--ARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTV 291
Query: 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251
++N+++ YA EAL L+ E+++ + T + + L L+ K H +
Sbjct: 292 AWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGL 351
Query: 252 KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSI 311
+ G + NTAL+D+++K GR++DA +VFD M K+ +W+A+I Y HG+G K++
Sbjct: 352 IRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAV 411
Query: 312 LMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDL 371
MFE M+ V+P+ +TFL +L AC ++GL ++GW F SM + + I P HY CM++L
Sbjct: 412 EMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIEL 471
Query: 372 LGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDY 431
LGR G LDEAY I P K T +W LL++C H NL L + E+++ + +Y
Sbjct: 472 LGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNY 531
Query: 432 VILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQ 491
V+L NL +GR + + + +K +G+ P C+ IEV FFSGD +H S ++
Sbjct: 532 VVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIY 591
Query: 492 KALDELVKELKMVGYVP-DTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIR 550
+ LDEL+KE+ GYV + L+ D++++E++++ RYHSEKLAI FGL+NT T ++
Sbjct: 592 QKLDELMKEISEYGYVAEENELL--PDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQ 649
Query: 551 VVKNLRVC 558
+ ++ R+C
Sbjct: 650 ITQSHRIC 657
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Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 192 bits (489), Expect = 1e-52
Identities = 116/413 (28%), Positives = 215/413 (52%), Gaps = 24/413 (5%)
Query: 38 KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY 97
+++HA ++ + D++V+ LI T + A L+FDR+P D + +N M GY
Sbjct: 207 REVHAHVVRFGFELDVDVVNALI---TMYVKCGDVVSARLVFDRMPRRDCISWNAMISGY 263
Query: 98 SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNS 157
+ + + LF + + PD + S++ AC +G E L G+++H + +K G
Sbjct: 264 FENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERL--GREMHGYVVKTGFAV 321
Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217
++ VC +LI +Y A ++F + VS+ A+I+ Y ++ P++AL + ++
Sbjct: 322 DVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALME 381
Query: 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277
+ N+ P ++T+ S LS+CA LG LD+G +HE ++ GL YV V ALI+M++KC +D
Sbjct: 382 QDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCID 441
Query: 278 DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337
A+ VF N+ KD +W+++I + + ++++ F + M + P+ +T + L AC+
Sbjct: 442 KALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQ-MLLTLKPNSVTLIAALSACA 500
Query: 338 HTGLVDEGWN-YFYSMRDKYGI---VPGIKHYGCMVDLLGRAGRLDEAY-RF-IDELPIK 391
G + G + + +R G +P ++DL R GR++ A+ +F E +
Sbjct: 501 RIGALMCGKEIHAHVLRTGIGFDGFLP-----NALLDLYVRCGRMNYAWNQFNSHEKDVV 555
Query: 392 STPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCA--RAG 442
S W LL+ +H +A ++ R+ E + + +S LCA R+G
Sbjct: 556 S----WNILLTGYVAHGKGSMAVELFNRMVESGV-NPDEVTFISLLCACSRSG 603
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Length = 857 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 185 bits (472), Expect = 2e-50
Identities = 99/329 (30%), Positives = 177/329 (53%), Gaps = 4/329 (1%)
Query: 74 HAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACA 133
HA +F ++PE D+ +N + GY+++ A+ L+ +L +G+ PD Y+FP +L+ C
Sbjct: 139 HAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCG 198
Query: 134 CVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSY 193
G L G+++H ++ G ++ V LI +Y +C DV +AR +F+ + +S+
Sbjct: 199 --GIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISW 256
Query: 194 NAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK 253
NA+I+ Y + E L LF ++E ++ P +T+ S +S+C LLG LG+ +H Y+ K
Sbjct: 257 NAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVK 316
Query: 254 YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILM 313
G V V +LI M+ G +A VF M KD +W+AMI Y +G K++
Sbjct: 317 TGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALET 376
Query: 314 FEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLG 373
+ M + VSPDEIT +L AC+ G +D G + + ++ G++ + ++++
Sbjct: 377 YALMEQDNVSPDEITIASVLSACACLGDLDVGVK-LHELAERKGLISYVVVANALIEMYS 435
Query: 374 RAGRLDEAYRFIDELPIKSTPILWRTLLS 402
+ +D+A +P K I W ++++
Sbjct: 436 KCKCIDKALEVFHNIPEKDV-ISWTSIIA 463
|
Length = 857 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 141 bits (358), Expect = 9e-36
Identities = 83/290 (28%), Positives = 145/290 (50%), Gaps = 6/290 (2%)
Query: 133 ACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVS 192
AC+ +++ K ++ G + Y+ ++ ++ +C + ARR+F+ + E + S
Sbjct: 132 ACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLAS 191
Query: 193 YNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIK 252
+ II + EA +LFRE+ E T + L + A LGS G+ +H +
Sbjct: 192 WGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVL 251
Query: 253 KYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSIL 312
K G+ V+ ALIDM++KCG ++DA VFD M K T AW++M+ YA HG +++
Sbjct: 252 KTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALC 311
Query: 313 MFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLL 372
++ EM + VS D+ TF ++ S L++ + + G I +VDL
Sbjct: 312 LYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLI-RTGFPLDIVANTALVDLY 370
Query: 373 GRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFE 422
+ GR+++A D +P K+ I W L++ +H G + +E +FE
Sbjct: 371 SKWGRMEDARNVFDRMPRKNL-ISWNALIAGYGNH---GRGTKAVE-MFE 415
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 118 bits (296), Expect = 7e-28
Identities = 76/288 (26%), Positives = 141/288 (48%), Gaps = 7/288 (2%)
Query: 33 SFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNT 92
S R +Q+H +KT + D V LI+ ++ +E A +FD +PE V +N+
Sbjct: 239 SARAGQQLHCCVLKTGVVGDTFVSCALIDMYSK---CGDIEDARCVFDGMPEKTTVAWNS 295
Query: 93 MARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIK 152
M GY+ A+ L+ E+ +SG+ D ++F +++ + + LE KQ H I+
Sbjct: 296 MLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLA--LLEHAKQAHAGLIR 353
Query: 153 LGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSL 212
G ++ T L++LY++ +E AR +F+ + ++S+NA+I Y R +A+ +
Sbjct: 354 TGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEM 413
Query: 213 FRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTA-LIDMHA 271
F + + P VT L+ LS+C G + G I + + + K ++ A +I++
Sbjct: 414 FERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLG 473
Query: 272 KCGRLDDAVSVFDNMSGKDT-QAWSAMIVAYATHGQGHKSILMFEEMM 318
+ G LD+A ++ K T W+A++ A H L E++
Sbjct: 474 REGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLY 521
|
Length = 697 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 113 bits (285), Expect = 3e-26
Identities = 77/326 (23%), Positives = 148/326 (45%), Gaps = 11/326 (3%)
Query: 120 PDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAAR 179
D+ ++ +L + C A+EEG ++ A+ + + + +++++ ++ A
Sbjct: 84 VDEDAYVALFRLCE--WKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAW 141
Query: 180 RIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLG 239
+F + E + S+N ++ YA++ +EAL L+ + ++P T L +C +
Sbjct: 142 YVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIP 201
Query: 240 SLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIV 299
L G+ +H ++ ++G + V V ALI M+ KCG + A VFD M +D +W+AMI
Sbjct: 202 DLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMIS 261
Query: 300 AYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGW-NYFYSMRDKYGI 358
Y +G+ + + +F M + V PD +T ++ AC G DE + K G
Sbjct: 262 GYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLG--DERLGREMHGYVVKTGF 319
Query: 359 VPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIE 418
+ ++ + G EA + + K + W ++S + GL + +E
Sbjct: 320 AVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDA-VSWTAMISGYEKN---GLPDKALE 375
Query: 419 --RIFELDDSHGGDYVILSNLCARAG 442
+ E D+ + I S L A A
Sbjct: 376 TYALMEQDNVSPDEITIASVLSACAC 401
|
Length = 857 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 81.8 bits (202), Expect = 3e-16
Identities = 79/293 (26%), Positives = 128/293 (43%), Gaps = 21/293 (7%)
Query: 227 TMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNM 286
ML +S CA +D + +++ GL K+ T LI AK G++D VF M
Sbjct: 441 NML--MSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEM 498
Query: 287 SGKDTQA----WSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLV 342
+A + A+I A GQ K+ + M V PD + F L+ AC +G V
Sbjct: 499 VNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAV 558
Query: 343 DEGWNYFYSMR-DKYGIVPGIKHYGCMVDLLGRAGRLD---EAYRFIDELPIKSTPILWR 398
D ++ M+ + + I P G ++ AG++D E Y+ I E IK TP ++
Sbjct: 559 DRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYT 618
Query: 399 TLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRG 458
++SCS + A + + + + D V S L AG D+D K
Sbjct: 619 IAVNSCSQKGDWDFALSIYDDMKK--KGVKPDEVFFSALVDVAGHAGDLD------KAFE 670
Query: 459 VLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTS 511
+L+ I++ V + S G S + + +KAL EL +++K + P S
Sbjct: 671 ILQDARKQGIKLGTVS--YSSLMGACSNAKNWKKAL-ELYEDIKSIKLRPTVS 720
|
Length = 1060 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 78.8 bits (194), Expect = 3e-15
Identities = 57/232 (24%), Positives = 105/232 (45%), Gaps = 8/232 (3%)
Query: 197 ITAYARSSRPNEALSLFRELQERNLKPTDVTMLSAL-SSCALLGSLDLGKWIHEYIKKYG 255
I R EAL LF L+ + AL +C L S+ K ++ +++ G
Sbjct: 94 IEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG 153
Query: 256 LDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFE 315
+ + ++ MH KCG L DA +FD M ++ +W +I G ++ +F
Sbjct: 154 FEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFR 213
Query: 316 EMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGC-MVDLLGR 374
EM + + TF+ +L A + G G + K G+V G C ++D+ +
Sbjct: 214 EMWEDGSDAEPRTFVVMLRASAGLGSARAG-QQLHCCVLKTGVV-GDTFVSCALIDMYSK 271
Query: 375 AGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS 426
G +++A D +P K+T + W ++L+ + H G +++ + +E+ DS
Sbjct: 272 CGDIEDARCVFDGMPEKTT-VAWNSMLAGYALH---GYSEEALCLYYEMRDS 319
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 69.5 bits (170), Expect = 3e-12
Identities = 70/339 (20%), Positives = 144/339 (42%), Gaps = 28/339 (8%)
Query: 85 PDIVLFNTMARGYSRSKTPIRAIF-LFVELLNSGLLPDDYSFPSLLKACACVGAEALEEG 143
D L+ T+ ++S + A+F +F E++N+G+ + ++F +L+ CA G A
Sbjct: 470 ADCKLYTTLISTCAKSGK-VDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA---- 524
Query: 144 KQLHCFAIKLGLN--SNLYVCTTLINLYAECSDVEAARRIFENISE---------PCVVS 192
K + I N + V LI+ C A R F+ ++E P ++
Sbjct: 525 KAFGAYGIMRSKNVKPDRVVFNALIS---ACGQSGAVDRAFDVLAEMKAETHPIDPDHIT 581
Query: 193 YNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIK 252
A++ A A + + + A +++ + E N+K T A++SC+ G D I++ +K
Sbjct: 582 VGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMK 641
Query: 253 KYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQ----AWSAMIVAYATHGQGH 308
K G+ +AL+D+ G LD A + + + + ++S+++ A +
Sbjct: 642 KKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWK 701
Query: 309 KSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCM 368
K++ ++E++ ++ P T L+ A + + M+ G+ P Y +
Sbjct: 702 KALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKR-LGLCPNTITYSIL 760
Query: 369 VDLLGRAGRLDEAYRFIDELP---IKSTPILWRTLLSSC 404
+ R D + + IK ++ R + C
Sbjct: 761 LVASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLC 799
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 56.6 bits (138), Expect = 9e-11
Identities = 18/48 (37%), Positives = 28/48 (58%), Gaps = 3/48 (6%)
Query: 188 PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVT---MLSAL 232
P VV+YN +I Y + + EAL LF E+++R +KP T ++ L
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 61.0 bits (148), Expect = 1e-09
Identities = 68/333 (20%), Positives = 147/333 (44%), Gaps = 50/333 (15%)
Query: 99 RSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSN 158
+ + ++ F F +L+ + P +F L+ CA ++ ++ ++ + GL ++
Sbjct: 417 KKQRAVKEAFRFAKLIRN---PTLSTFNMLMSVCA--SSQDIDGALRVLRLVQEAGLKAD 471
Query: 159 LYVCTTLINLYAECSDVEAARRIFENIS----EPCVVSYNAIITAYARSSRPNEALSLFR 214
+ TTLI+ A+ V+A +F + E V ++ A+I AR+ + +A +
Sbjct: 472 CKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYG 531
Query: 215 ELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCG 274
++ +N+KP V + +S+C G++D + L +M A+
Sbjct: 532 IMRSKNVKPDRVVFNALISACGQSGAVD------------------RAFDVLAEMKAETH 573
Query: 275 RLD-DAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLL 333
+D D ++V A++ A A GQ ++ +++ + + + + +
Sbjct: 574 PIDPDHITV------------GALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAV 621
Query: 334 YACSHTGLVDEGWNYFYSMRD---KYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPI 390
+CS G W++ S+ D K G+ P + +VD+ G AG LD+A+ + +
Sbjct: 622 NSCSQKG----DWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARK 677
Query: 391 KSTP---ILWRTLLSSCSSHNNLGLAKQVIERI 420
+ + + +L+ +CS+ N A ++ E I
Sbjct: 678 QGIKLGTVSYSSLMGACSNAKNWKKALELYEDI 710
|
Length = 1060 |
| >gnl|CDD|222749 pfam14432, DYW_deaminase, DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Score = 45.9 bits (109), Expect = 3e-06
Identities = 33/103 (32%), Positives = 50/103 (48%), Gaps = 24/103 (23%)
Query: 463 PGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEE 522
PGC E ++ SGDG H + +EL + +K+ G VP+T + H D++ EE
Sbjct: 1 PGCVWSEG----KKTLSGDGSH------PTSKEELFQRIKVEGVVPETKEIGH-DVDAEE 49
Query: 523 KEIALRY------HSEKLAITFGLLNTPPGTTIRVVKNL-RVC 558
H+EK A+ +GLL T R++K L R+C
Sbjct: 50 FRDNGIKGKLLASHAEKQALAYGLLTT------RIIKVLKRMC 86
|
A family of nucleic acid deaminases prototyped by the plant PPR DYW proteins that are implicated in chloroplast and mitochondrial RNA transcript maturation by numerous C to U editing events. The name derives from the DYW motif present at the C-terminus of the classical plant PPR DYW deaminases. Members of this family are present in bacteria, plants, Naegleria, and fungi. Plants and Naegleria show lineage-specific expansions of this family. The classical DYW family contain an additional C-terminal metal-binding cluster composed of 2 histidines and a CxC motif and are often fused to PPR repeats. Ascomycete versions, which are independent lateral transfers, contain a large insert within the domain and are often fused to ankyrin repeats. Bacterial versions are predicted to function as toxins in polymorphic toxin systems. Length = 116 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 42.1 bits (100), Expect = 8e-06
Identities = 12/31 (38%), Positives = 24/31 (77%)
Query: 191 VSYNAIITAYARSSRPNEALSLFRELQERNL 221
V+YN++I+ Y ++ + EAL LF+E++E+ +
Sbjct: 1 VTYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 41.7 bits (99), Expect = 1e-05
Identities = 14/35 (40%), Positives = 23/35 (65%)
Query: 191 VSYNAIITAYARSSRPNEALSLFRELQERNLKPTD 225
V+YN +I ++ R EAL LF+E++ER ++P
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 41.2 bits (98), Expect = 3e-05
Identities = 11/50 (22%), Positives = 23/50 (46%)
Query: 289 KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSH 338
D ++ +I Y G+ +++ +F EM K + P+ T+ L+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205985 pfam13812, PPR_3, Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Score = 41.0 bits (97), Expect = 3e-05
Identities = 12/34 (35%), Positives = 23/34 (67%)
Query: 190 VVSYNAIITAYARSSRPNEALSLFRELQERNLKP 223
+ +YNA++ A A++ P+ AL++ E++ LKP
Sbjct: 1 LETYNALLLALAKAGDPDLALAVLEEMKASGLKP 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 40.9 bits (97), Expect = 4e-05
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 85 PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACA 133
PD+V +NT+ GY + A+ LF E+ G+ P+ Y++ L+
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 35.8 bits (84), Expect = 0.002
Identities = 12/49 (24%), Positives = 24/49 (48%), Gaps = 4/49 (8%)
Query: 158 NLYVCTTLINLYAECSDVEAARRIFENISE----PCVVSYNAIITAYAR 202
++ TLI+ Y + VE A ++F + + P V +Y+ +I +
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 558 | |||
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.96 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.96 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.91 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.89 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.89 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.88 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.87 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.87 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.87 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.87 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.84 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.84 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.83 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.81 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.79 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.78 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.78 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.76 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.71 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.68 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.67 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.64 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.63 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.63 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.61 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.61 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.59 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.58 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.57 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.56 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.55 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.54 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.53 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.52 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.51 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.51 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.51 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.5 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.5 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.49 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.49 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.47 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.43 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.41 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.41 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.41 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.41 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.38 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.37 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.36 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 99.36 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.33 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.31 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.29 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.29 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.28 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.26 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.25 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 99.22 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 99.22 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.21 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.16 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.14 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 99.13 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.13 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 99.11 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.11 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.11 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 99.11 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 99.09 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.06 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 99.05 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.04 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 99.03 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 99.03 | |
| PF14432 | 116 | DYW_deaminase: DYW family of nucleic acid deaminas | 99.02 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.98 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.96 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.96 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.94 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.91 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.9 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.89 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.89 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.89 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.88 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.85 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.83 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.8 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.79 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.77 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.77 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.77 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.69 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.68 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.68 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.67 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.65 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.64 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.62 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.61 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.57 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.55 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.55 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.52 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.51 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.51 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 98.5 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.5 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.5 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.46 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.46 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.44 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.43 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.42 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.41 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.41 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.39 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.39 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.37 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.34 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 98.33 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.33 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 98.32 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.29 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 98.29 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.27 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.26 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.25 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.21 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.2 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.16 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 98.14 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.14 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 98.14 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 98.1 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 98.08 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 98.08 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 98.0 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.99 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.99 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.96 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.95 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.94 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.87 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.87 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.85 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 97.83 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.83 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.8 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.78 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.72 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.68 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.66 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.65 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 97.65 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.65 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.64 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.62 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 97.59 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.59 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.58 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.58 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.58 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 97.57 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 97.57 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.56 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 97.53 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 97.52 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 97.51 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 97.5 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.49 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 97.46 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.45 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.44 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.42 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 97.41 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.39 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.32 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 97.27 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.26 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.25 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.24 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 97.2 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 97.19 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 97.18 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 97.17 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.14 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 97.14 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 97.13 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 97.11 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 97.11 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.11 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 97.05 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 97.04 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.99 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 96.97 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.95 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.92 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.89 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.89 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 96.87 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 96.86 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.85 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.79 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.76 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 96.75 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.75 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.69 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 96.68 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.64 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 96.61 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 96.59 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 96.57 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.55 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 96.47 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 96.43 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.32 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.31 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.28 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.24 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 96.2 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 96.11 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 96.07 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 96.02 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 95.97 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 95.92 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.88 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 95.84 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 95.73 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 95.7 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.69 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.64 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 95.58 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 95.53 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.51 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.51 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 95.41 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 95.31 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 95.2 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 95.01 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.99 | |
| PRK11619 | 644 | lytic murein transglycosylase; Provisional | 94.85 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 94.82 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 94.78 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 94.77 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.74 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.73 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 94.66 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.63 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 94.62 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.53 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 94.53 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.49 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 94.48 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 94.3 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 94.09 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 94.06 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 94.0 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 93.69 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 93.59 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 93.48 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 93.16 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.85 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 92.84 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 92.65 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 92.58 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 92.49 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 92.33 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 92.2 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 92.17 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 92.01 | |
| PF13181 | 34 | TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_ | 91.95 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 91.92 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 91.79 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 91.67 | |
| KOG0890 | 2382 | consensus Protein kinase of the PI-3 kinase family | 91.6 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 91.5 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 91.46 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 91.29 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 91.2 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 90.89 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 90.06 | |
| COG4785 | 297 | NlpI Lipoprotein NlpI, contains TPR repeats [Gener | 89.35 | |
| PF14853 | 53 | Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repe | 89.27 | |
| KOG1586 | 288 | consensus Protein required for fusion of vesicles | 89.17 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 89.14 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 88.79 | |
| PRK09687 | 280 | putative lyase; Provisional | 88.69 | |
| PF00515 | 34 | TPR_1: Tetratricopeptide repeat; InterPro: IPR0014 | 88.58 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 88.47 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 88.17 | |
| TIGR02561 | 153 | HrpB1_HrpK type III secretion protein HrpB1/HrpK. | 88.09 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 87.93 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 87.91 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 87.65 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 87.62 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 87.54 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 87.5 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 87.07 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 87.03 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 86.92 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 86.57 | |
| PF13431 | 34 | TPR_17: Tetratricopeptide repeat | 86.15 | |
| KOG3364 | 149 | consensus Membrane protein involved in organellar | 86.05 | |
| PRK15180 | 831 | Vi polysaccharide biosynthesis protein TviD; Provi | 85.63 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 85.62 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 85.44 | |
| PF07719 | 34 | TPR_2: Tetratricopeptide repeat; InterPro: IPR0131 | 85.37 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 85.23 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 85.14 | |
| KOG1464 | 440 | consensus COP9 signalosome, subunit CSN2 [Posttran | 84.92 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 84.9 | |
| COG1747 | 711 | Uncharacterized N-terminal domain of the transcrip | 84.52 | |
| COG2909 | 894 | MalT ATP-dependent transcriptional regulator [Tran | 84.26 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 84.15 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 83.75 | |
| PRK10941 | 269 | hypothetical protein; Provisional | 83.48 | |
| PRK09687 | 280 | putative lyase; Provisional | 83.2 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 83.13 | |
| PF07721 | 26 | TPR_4: Tetratricopeptide repeat; InterPro: IPR0117 | 82.8 | |
| smart00028 | 34 | TPR Tetratricopeptide repeats. Repeats present in | 82.39 | |
| TIGR02508 | 115 | type_III_yscG type III secretion protein, YscG fam | 82.14 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 81.55 | |
| PF00637 | 143 | Clathrin: Region in Clathrin and VPS; InterPro: IP | 81.43 | |
| KOG4648 | 536 | consensus Uncharacterized conserved protein, conta | 81.37 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 80.7 | |
| PF13374 | 42 | TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT | 80.65 | |
| PF13174 | 33 | TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_ | 80.41 | |
| COG3947 | 361 | Response regulator containing CheY-like receiver a | 80.39 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 80.13 |
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7e-90 Score=725.97 Aligned_cols=536 Identities=32% Similarity=0.610 Sum_probs=527.6
Q ss_pred CCCCHHHHHHHHHhccCCchH---HHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCCCCcccHHHH
Q 036003 17 LCTNTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTM 93 (558)
Q Consensus 17 ~~p~~~~~~~ll~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l 93 (558)
..|+..+|++++.+|++.+.. ++++..|.+.|+.||..++|.|+.+|+++ |++++|.++|++|++||+.+||.+
T Consensus 119 ~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~---g~~~~A~~lf~~m~~~~~~t~n~l 195 (697)
T PLN03081 119 FTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMHVKC---GMLIDARRLFDEMPERNLASWGTI 195 (697)
T ss_pred CCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHHHHHHHhcC---CCHHHHHHHHhcCCCCCeeeHHHH
Confidence 468899999999999988877 89999999999999999999999999999 999999999999999999999999
Q ss_pred HHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Q 036003 94 ARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECS 173 (558)
Q Consensus 94 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g 173 (558)
|.+|++.|++++|+++|++|.+.|+.||..+|+.++.+|+.. |..+.+.+++..+.+.|+.||..+|+.|+++|+++|
T Consensus 196 i~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~--~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g 273 (697)
T PLN03081 196 IGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGL--GSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG 273 (697)
T ss_pred HHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcC--CcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCC
Confidence 999999999999999999999999999999999999999999 999999999999999999999999999999999999
Q ss_pred ChHHHHHHHhccCCCCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 036003 174 DVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK 253 (558)
Q Consensus 174 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 253 (558)
++++|.++|++|.++|+.+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|++++|.+++..|.+
T Consensus 274 ~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~ 353 (697)
T PLN03081 274 DIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIR 353 (697)
T ss_pred CHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036003 254 YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLL 333 (558)
Q Consensus 254 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 333 (558)
.|++||..+|++|+++|+++|++++|.++|++|.++|..+||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++
T Consensus 354 ~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll 433 (697)
T PLN03081 354 TGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVL 433 (697)
T ss_pred hCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 036003 334 YACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLA 413 (558)
Q Consensus 334 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 413 (558)
.+|++.|.+++|.++|+.|.+.+++.|+..+|++++++|++.|++++|.+++++|+..|+..+|++|+.+|..+|+++.|
T Consensus 434 ~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a 513 (697)
T PLN03081 434 SACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRAPFKPTVNMWAALLTACRIHKNLELG 513 (697)
T ss_pred HHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHH
Confidence 99999999999999999999877999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhCCCccCCcccEEEECCEEEEEeeCCCCCCChHHHHHH
Q 036003 414 KQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKA 493 (558)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (558)
..+++++.+.+|.+..+|..|+++|++.|+|++|.++++.|.++|+.+.|+++|+.+++.++.|+.++..||..+++++.
T Consensus 514 ~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~k~~g~s~i~~~~~~~~f~~~d~~h~~~~~i~~~ 593 (697)
T PLN03081 514 RLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLSMHPACTWIEVKKQDHSFFSGDRLHPQSREIYQK 593 (697)
T ss_pred HHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCccCCCeeEEEECCeEEEEccCCCCCccHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHcCcccCCCCcccCCCChHHHHHHhhhchHHHHHHHhhcCCCCCCcEEEeccccCC
Q 036003 494 LDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558 (558)
Q Consensus 494 ~~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (558)
++++..+|++.|+.||+..+. .++++++++..+.+||||+|++|+++.+|++++|+|+||||||
T Consensus 594 l~~l~~~~~~~gy~~~~~~~~-~~~~~~~~~~~~~~hsekla~a~~l~~~~~~~~i~i~knlr~c 657 (697)
T PLN03081 594 LDELMKEISEYGYVAEENELL-PDVDEDEEKVSGRYHSEKLAIAFGLINTSEWTPLQITQSHRIC 657 (697)
T ss_pred HHHHHHHHHHcCCCCCcchhh-ccccHHHHHHHHHhccHHHHHHhhCccCCCCCeEEEecCCEEC
Confidence 999999999999999999988 8999999999999999999999999999999999999999999
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.9e-87 Score=718.57 Aligned_cols=535 Identities=36% Similarity=0.661 Sum_probs=523.6
Q ss_pred CCCCCCHHHHHHHHHhccCCchH---HHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCCCCcccHH
Q 036003 15 PKLCTNTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFN 91 (558)
Q Consensus 15 ~~~~p~~~~~~~ll~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 91 (558)
.+..||..+|++++.+|++.++. +++|..+.+.|+.||..+||.||.+|+++ |++++|.++|++|..||..+||
T Consensus 282 ~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~---g~~~~A~~vf~~m~~~d~~s~n 358 (857)
T PLN03077 282 LSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSL---GSWGEAEKVFSRMETKDAVSWT 358 (857)
T ss_pred cCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhc---CCHHHHHHHHhhCCCCCeeeHH
Confidence 46789999999999999998887 99999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 036003 92 TMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAE 171 (558)
Q Consensus 92 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 171 (558)
.+|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++. |++++|.++++.+.+.|+.|+..+||.|+++|++
T Consensus 359 ~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~--g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k 436 (857)
T PLN03077 359 AMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACL--GDLDVGVKLHELAERKGLISYVVVANALIEMYSK 436 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhcc--chHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCChHHHHHHHhccCCCCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 036003 172 CSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251 (558)
Q Consensus 172 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 251 (558)
+|++++|.++|++|.++|..+||++|.+|++.|+.++|+.+|++|.. +++||..||+.++.+|++.|+++.+.+++..+
T Consensus 437 ~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~ 515 (857)
T PLN03077 437 CKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHV 515 (857)
T ss_pred cCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHH
Confidence 99999999999999999999999999999999999999999999986 59999999999999999999999999999999
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 036003 252 KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLG 331 (558)
Q Consensus 252 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 331 (558)
.+.|+.++..++++|+++|+++|++++|.++|+.+ .+|..+||++|.+|++.|+.++|+++|++|.+.|+.||..||+.
T Consensus 516 ~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~-~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ 594 (857)
T PLN03077 516 LRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH-EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFIS 594 (857)
T ss_pred HHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHH
Confidence 99999999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 036003 332 LLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLG 411 (558)
Q Consensus 332 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 411 (558)
++.+|++.|++++|.++|+.|.+.+++.|+..+|++++++|++.|++++|.+++++|+.+||..+|++|+.+|..+|+.+
T Consensus 595 ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e 674 (857)
T PLN03077 595 LLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVE 674 (857)
T ss_pred HHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChH
Confidence 99999999999999999999996679999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhCCCccCCcccEEEECCEEEEEeeCCCCCCChHHHH
Q 036003 412 LAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQ 491 (558)
Q Consensus 412 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (558)
.++...+++++++|++...|..|.+.|+..|+|++|.++.+.|+++|+.++||++|+.+++.++.|..++..||..+++.
T Consensus 675 ~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a~~vr~~M~~~g~~k~~g~s~ie~~~~~~~f~~~d~~h~~~~~i~ 754 (857)
T PLN03077 675 LGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEVARVRKTMRENGLTVDPGCSWVEVKGKVHAFLTDDESHPQIKEIN 754 (857)
T ss_pred HHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHHHHHHHHHHHcCCCCCCCccEEEECCEEEEEecCCCCCcchHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCcccCCCCcccCCCChHHHHHHhhhchHHHHHHHhhcCCCCCCcEEEeccccCC
Q 036003 492 KALDELVKELKMVGYVPDTSLVHHGDMEDEEKEIALRYHSEKLAITFGLLNTPPGTTIRVVKNLRVC 558 (558)
Q Consensus 492 ~~~~~l~~~m~~~g~~pd~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 558 (558)
..++++.++|++.|+.||++.+. +.++++++..+.+||||+|++|+++++|+++||+|+||||||
T Consensus 755 ~~l~~l~~~~~~~g~~~~~~~~~--~~~~~~k~~~~~~hse~la~a~~l~~~~~~~~i~i~knlr~c 819 (857)
T PLN03077 755 TVLEGFYEKMKASGLAGSESSSM--DEIEVSKDDIFCGHSERLAIAFGLINTVPGMPIWVTKNLYMC 819 (857)
T ss_pred HHHHHHHHHHHhCCcCCCcchhc--cccHHHHHHHHHhccHHHHHHHhhhcCCCCCeEEEeCCCEeC
Confidence 99999999999999999998876 447788999999999999999999999999999999999999
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=7.6e-68 Score=571.75 Aligned_cols=475 Identities=24% Similarity=0.447 Sum_probs=449.0
Q ss_pred CCCCCCHHHHHHHHHhccCCchH---HHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCCCCcccHH
Q 036003 15 PKLCTNTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFN 91 (558)
Q Consensus 15 ~~~~p~~~~~~~ll~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~ 91 (558)
.+..||..||++++++|+..+++ +++|..+.+.|+.|+..++|+||.+|+++ |++++|.++|++|++||..+||
T Consensus 181 ~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~---g~~~~A~~lf~~m~~~d~~s~n 257 (857)
T PLN03077 181 AGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKC---GDVVSARLVFDRMPRRDCISWN 257 (857)
T ss_pred cCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcC---CCHHHHHHHHhcCCCCCcchhH
Confidence 37889999999999999988877 99999999999999999999999999999 9999999999999999999999
Q ss_pred HHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 036003 92 TMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAE 171 (558)
Q Consensus 92 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 171 (558)
++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|+.. |+++.+.+++..+.+.|+.||..+||.|+.+|++
T Consensus 258 ~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~--g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k 335 (857)
T PLN03077 258 AMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELL--GDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLS 335 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhc--CChHHHHHHHHHHHHhCCccchHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999 9999999999999999999999999999999999
Q ss_pred CCChHHHHHHHhccCCCCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 036003 172 CSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251 (558)
Q Consensus 172 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 251 (558)
+|++++|.++|++|..+|..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+++.|.++++.+
T Consensus 336 ~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~ 415 (857)
T PLN03077 336 LGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELA 415 (857)
T ss_pred cCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHH
Q 036003 252 KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLG 331 (558)
Q Consensus 252 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 331 (558)
.+.|+.++..+|+.|+++|+++|++++|.++|++|.++|..+|+++|.+|++.|+.++|+.+|++|.. ++.||..||+.
T Consensus 416 ~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~ 494 (857)
T PLN03077 416 ERKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIA 494 (857)
T ss_pred HHhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999986 59999999999
Q ss_pred HHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 036003 332 LLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLG 411 (558)
Q Consensus 332 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 411 (558)
++.+|++.|+++.+.+++..+.+. |+.++..++++||++|+++|++++|.++|+++ .||..+|++++.+|+++|+.+
T Consensus 495 lL~a~~~~g~l~~~~~i~~~~~~~-g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~ 571 (857)
T PLN03077 495 ALSACARIGALMCGKEIHAHVLRT-GIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGS 571 (857)
T ss_pred HHHHHhhhchHHHhHHHHHHHHHh-CCCccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHH
Confidence 999999999999999999999986 99999999999999999999999999999999 789999999999999999999
Q ss_pred HHHHHHHHHHccC-CCCcccHHhHHHHHHhcCChHHHHHHHHHHH-hCCCccCCcccEEEECCEEEEEeeCCCCCCChHH
Q 036003 412 LAKQVIERIFELD-DSHGGDYVILSNLCARAGRWEDVDYLRKLMK-DRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTD 489 (558)
Q Consensus 412 ~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (558)
+|.++|++|.+.+ .++..+|..++.+|.+.|++++|.++|+.|. +.|+.|+..++...++.+. ..|..++
T Consensus 572 ~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~--------r~G~~~e 643 (857)
T PLN03077 572 MAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLG--------RAGKLTE 643 (857)
T ss_pred HHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHH--------hCCCHHH
Confidence 9999999999887 6678999999999999999999999999998 7899998877766544322 3344444
Q ss_pred HHHHHHHHHHHHHHcCcccCCCCc
Q 036003 490 LQKALDELVKELKMVGYVPDTSLV 513 (558)
Q Consensus 490 ~~~~~~~l~~~m~~~g~~pd~~~~ 513 (558)
+.+ ++++| ++.||..+|
T Consensus 644 A~~----~~~~m---~~~pd~~~~ 660 (857)
T PLN03077 644 AYN----FINKM---PITPDPAVW 660 (857)
T ss_pred HHH----HHHHC---CCCCCHHHH
Confidence 443 45555 689997654
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=5.2e-63 Score=524.08 Aligned_cols=447 Identities=18% Similarity=0.260 Sum_probs=417.2
Q ss_pred CCHHHHHHHHHhccCCchH---HHHHHHHHHhCC-CCChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCCCCcccHHHHH
Q 036003 19 TNTPNALSLLPRCTSFRGL---KQIHAVTIKTHL-QNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMA 94 (558)
Q Consensus 19 p~~~~~~~ll~~~~~~~~~---~~~~~~~~~~g~-~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li 94 (558)
++...|..++..+.+.+.+ .++++.|.+.|+ .++...++.++..|.+. |.+++|.++|+.|..||..+|+.+|
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~---g~~~eAl~lf~~M~~pd~~Tyn~LL 444 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQ---RAVKEAFRFAKLIRNPTLSTFNMLM 444 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHC---CCHHHHHHHHHHcCCCCHHHHHHHH
Confidence 4566777888777655555 899999999995 67788889999999999 9999999999999999999999999
Q ss_pred HHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC
Q 036003 95 RGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSD 174 (558)
Q Consensus 95 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 174 (558)
.+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++. |++++|.++|++|.+.|+.||..+|+.+|.+|++.|+
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~--G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~ 522 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKS--GKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQ 522 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC--cCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcC
Confidence 99999999999999999999999999999999999999999 9999999999999999999999999999999999999
Q ss_pred hHHHHHHHhccCC----CCcchHHHHHHHHHHCCCccHHHHHHHHHHH--CCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 036003 175 VEAARRIFENISE----PCVVSYNAIITAYARSSRPNEALSLFRELQE--RNLKPTDVTMLSALSSCALLGSLDLGKWIH 248 (558)
Q Consensus 175 ~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~--~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 248 (558)
+++|.++|++|.+ ||..+|+.+|.+|++.|++++|.++|++|.+ .|+.||..+|+.++.+|++.|++++|.++|
T Consensus 523 ~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf 602 (1060)
T PLN03218 523 VAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVY 602 (1060)
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999964 9999999999999999999999999999986 679999999999999999999999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC----CCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCC
Q 036003 249 EYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS----GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP 324 (558)
Q Consensus 249 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 324 (558)
+.|.+.|+.|+..+|+.++.+|++.|++++|.++|++|. .+|..+|+.++.+|++.|++++|.++|++|.+.|+.|
T Consensus 603 ~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p 682 (1060)
T PLN03218 603 QMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL 682 (1060)
T ss_pred HHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 999999999999999999999999999999999999997 4599999999999999999999999999999999999
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC---CCCCCHHHHHHHH
Q 036003 325 DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL---PIKSTPILWRTLL 401 (558)
Q Consensus 325 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~~l~ 401 (558)
|..+|+.||.+|++.|++++|.++|++|.+. ++.||..+|+.||.+|++.|++++|.++|++| +..||..+|++++
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~-g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL 761 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSI-KLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILL 761 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Confidence 9999999999999999999999999999985 99999999999999999999999999999998 6789999999999
Q ss_pred HHHHhcCCHHHHHHHHHHHHccC-CCCcccHHhHHHHHHh----cC-------------------ChHHHHHHHHHHHhC
Q 036003 402 SSCSSHNNLGLAKQVIERIFELD-DSHGGDYVILSNLCAR----AG-------------------RWEDVDYLRKLMKDR 457 (558)
Q Consensus 402 ~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~----~g-------------------~~~~A~~~~~~m~~~ 457 (558)
.+|++.|++++|.+++++|.+.+ .++..+|+.++..|.+ ++ ..++|..+|++|.+.
T Consensus 762 ~a~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~ 841 (1060)
T PLN03218 762 VASERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISA 841 (1060)
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHC
Confidence 99999999999999999999988 5667889998876432 21 136799999999999
Q ss_pred CCccCCcccEEEEC
Q 036003 458 GVLKVPGCSSIEVN 471 (558)
Q Consensus 458 g~~~~~~~~~~~~~ 471 (558)
|+.|+..++...+.
T Consensus 842 Gi~Pd~~T~~~vL~ 855 (1060)
T PLN03218 842 GTLPTMEVLSQVLG 855 (1060)
T ss_pred CCCCCHHHHHHHHH
Confidence 99999776655543
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=9.6e-62 Score=514.46 Aligned_cols=438 Identities=17% Similarity=0.250 Sum_probs=412.8
Q ss_pred CCHHHHHHHHHhccCCchH---HHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCCCHHHHHHHHccCC----CCCcccHH
Q 036003 19 TNTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIP----EPDIVLFN 91 (558)
Q Consensus 19 p~~~~~~~ll~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~ 91 (558)
|+..+|+.++++|++.+++ ..+++.|.+.|+.||..+|+.||.+|+++ |++++|.++|++|. .||..+|+
T Consensus 435 pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~---G~vd~A~~vf~eM~~~Gv~PdvvTyn 511 (1060)
T PLN03218 435 PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKS---GKVDAMFEVFHEMVNAGVEANVHTFG 511 (1060)
T ss_pred CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC---cCHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 8999999999999999988 89999999999999999999999999999 99999999999998 48999999
Q ss_pred HHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHH--hCCCChHHHHHHHHHHH
Q 036003 92 TMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIK--LGLNSNLYVCTTLINLY 169 (558)
Q Consensus 92 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~--~g~~~~~~~~~~ll~~~ 169 (558)
.||.+|++.|++++|+++|++|.+.|+.||..+|+.+|.+|++. |++++|.++|++|.+ .|+.||..+|+.|+.+|
T Consensus 512 aLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~--G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay 589 (1060)
T PLN03218 512 ALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQS--GAVDRAFDVLAEMKAETHPIDPDHITVGALMKAC 589 (1060)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999 999999999999987 57899999999999999
Q ss_pred HhCCChHHHHHHHhccCC----CCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHH
Q 036003 170 AECSDVEAARRIFENISE----PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGK 245 (558)
Q Consensus 170 ~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 245 (558)
++.|++++|.++|+.|.+ |+..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|++.|++++|.
T Consensus 590 ~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~ 669 (1060)
T PLN03218 590 ANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAF 669 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHH
Confidence 999999999999999986 6789999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC----CCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCC
Q 036003 246 WIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS----GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321 (558)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 321 (558)
+++++|.+.|+.|+..+|+.|+.+|++.|++++|.++|++|. .||..+||.||.+|++.|++++|+++|++|.+.|
T Consensus 670 ~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~G 749 (1060)
T PLN03218 670 EILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLG 749 (1060)
T ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 999999999999999999999999999999999999999995 5799999999999999999999999999999999
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHh----hc-------------------CCH
Q 036003 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLG----RA-------------------GRL 378 (558)
Q Consensus 322 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~----~~-------------------g~~ 378 (558)
+.||..||+.++.+|++.|++++|.++|++|.+. |+.||..+|++|+.++. ++ +..
T Consensus 750 i~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~ 828 (1060)
T PLN03218 750 LCPNTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWT 828 (1060)
T ss_pred CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchH
Confidence 9999999999999999999999999999999986 99999999999997643 22 224
Q ss_pred HHHHHHHHhC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccC-CCCcccHHhHHHHHHhcCChHHHHHHHHHH
Q 036003 379 DEAYRFIDEL---PIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD-DSHGGDYVILSNLCARAGRWEDVDYLRKLM 454 (558)
Q Consensus 379 ~~A~~~~~~~---~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 454 (558)
++|..+|++| ++.||..||+.++.+++..+..+.+..+++.+...+ +++..+|++|++++.+. .++|..++++|
T Consensus 829 ~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em 906 (1060)
T PLN03218 829 SWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLVDGFGEY--DPRAFSLLEEA 906 (1060)
T ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHHHhhccC--hHHHHHHHHHH
Confidence 6799999999 788999999999988888899999999998876554 77788999999998432 36899999999
Q ss_pred HhCCCccCCc
Q 036003 455 KDRGVLKVPG 464 (558)
Q Consensus 455 ~~~g~~~~~~ 464 (558)
...|+.|+..
T Consensus 907 ~~~Gi~p~~~ 916 (1060)
T PLN03218 907 ASLGVVPSVS 916 (1060)
T ss_pred HHcCCCCCcc
Confidence 9999999875
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.8e-57 Score=478.28 Aligned_cols=410 Identities=23% Similarity=0.353 Sum_probs=383.9
Q ss_pred CCCcccHHHHHHHHhcCCCchHHHHHHHHhHHCC-CCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHH
Q 036003 84 EPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSG-LLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVC 162 (558)
Q Consensus 84 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~ 162 (558)
+++..+|+.+|.++.+.|++++|+++|+.|...+ ..||..+|+.++.+|++. ++++.+.+++..|.+.|+.||..+|
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~--~~~~~a~~l~~~m~~~g~~~~~~~~ 161 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIAL--KSIRCVKAVYWHVESSGFEPDQYMM 161 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHhCCCcchHHH
Confidence 3577899999999999999999999999998764 789999999999999999 9999999999999999999999999
Q ss_pred HHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChH
Q 036003 163 TTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLD 242 (558)
Q Consensus 163 ~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 242 (558)
|.|+.+|+++|++++|.++|++|.+||..+||++|.+|++.|++++|+++|++|.+.|+.|+..||+.++.+|++.|+.+
T Consensus 162 n~Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~ 241 (697)
T PLN03081 162 NRVLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSAR 241 (697)
T ss_pred HHHHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCC
Q 036003 243 LGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322 (558)
Q Consensus 243 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 322 (558)
.+.+++..+.+.|+.+|..+|++|+++|+++|++++|.++|+.|.++|+.+||.+|.+|++.|++++|+++|++|.+.|+
T Consensus 242 ~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~ 321 (697)
T PLN03081 242 AGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGV 321 (697)
T ss_pred HHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 036003 323 SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLS 402 (558)
Q Consensus 323 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~ 402 (558)
.||..||+.++.+|++.|++++|.+++..|.+. |+.||..+|++||++|+++|++++|.++|++|. .||..+|++||.
T Consensus 322 ~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~-g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~-~~d~~t~n~lI~ 399 (697)
T PLN03081 322 SIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRT-GFPLDIVANTALVDLYSKWGRMEDARNVFDRMP-RKNLISWNALIA 399 (697)
T ss_pred CCCHHHHHHHHHHHHhccchHHHHHHHHHHHHh-CCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCC-CCCeeeHHHHHH
Confidence 999999999999999999999999999999986 999999999999999999999999999999997 589999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHccC-CCCcccHHhHHHHHHhcCChHHHHHHHHHHHh-CCCccCCcccEEEECCEEEEEeeC
Q 036003 403 SCSSHNNLGLAKQVIERIFELD-DSHGGDYVILSNLCARAGRWEDVDYLRKLMKD-RGVLKVPGCSSIEVNNVVREFFSG 480 (558)
Q Consensus 403 ~~~~~g~~~~a~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-~g~~~~~~~~~~~~~~~~~~~~~~ 480 (558)
+|+++|+.++|.++|++|.+.+ .++..+|..++.+|++.|+.++|.++|+.|.+ .|+.|+..++...++.+
T Consensus 400 ~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l------- 472 (697)
T PLN03081 400 GYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELL------- 472 (697)
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHH-------
Confidence 9999999999999999999887 66789999999999999999999999999975 69999877766544432
Q ss_pred CCCCCChHHHHHHHHHHHHHHHHcCcccCCCC
Q 036003 481 DGVHSYSTDLQKALDELVKELKMVGYVPDTSL 512 (558)
Q Consensus 481 ~~~~~~~~~~~~~~~~l~~~m~~~g~~pd~~~ 512 (558)
...+..+++.+ + +.+.++.||..+
T Consensus 473 -~r~G~~~eA~~----~---~~~~~~~p~~~~ 496 (697)
T PLN03081 473 -GREGLLDEAYA----M---IRRAPFKPTVNM 496 (697)
T ss_pred -HhcCCHHHHHH----H---HHHCCCCCCHHH
Confidence 23455555544 3 345588888654
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.96 E-value=3.5e-26 Score=252.68 Aligned_cols=397 Identities=12% Similarity=0.065 Sum_probs=311.6
Q ss_pred CCChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCC---CCcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHH
Q 036003 50 QNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE---PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFP 126 (558)
Q Consensus 50 ~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 126 (558)
+.+..++..+...|... |++++|.+.|+++.+ .+...+..+...+...|++++|.+.|+++.+.+. .+..++.
T Consensus 462 ~~~~~~~~~l~~~~~~~---~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~ 537 (899)
T TIGR02917 462 PDNASLHNLLGAIYLGK---GDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDP-KNLRAIL 537 (899)
T ss_pred CCCcHHHHHHHHHHHhC---CCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CcHHHHH
Confidence 45566777777777777 788888887776543 3445566677777778888888888887776532 2556666
Q ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCC---CCcchHHHHHHHHHHC
Q 036003 127 SLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE---PCVVSYNAIITAYARS 203 (558)
Q Consensus 127 ~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 203 (558)
.+...+... |+.++|...++++.+.+ +.+...+..++..|.+.|++++|..+++.+.+ .+...|..+..+|.+.
T Consensus 538 ~l~~~~~~~--~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 614 (899)
T TIGR02917 538 ALAGLYLRT--GNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAA 614 (899)
T ss_pred HHHHHHHHc--CCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHc
Confidence 777777776 78888888888877664 44566677778888888888888888887764 4556788888888888
Q ss_pred CCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 036003 204 SRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVF 283 (558)
Q Consensus 204 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 283 (558)
|++++|...|+++.+.. +.+...+..+..++.+.|++++|..+++++.+.. +.+...+..++..+...|++++|.+++
T Consensus 615 ~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 692 (899)
T TIGR02917 615 GDLNKAVSSFKKLLALQ-PDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIA 692 (899)
T ss_pred CCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888888887653 3456677778888888888888888888887754 445677778888888888888888888
Q ss_pred hccCCC---CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCC
Q 036003 284 DNMSGK---DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVP 360 (558)
Q Consensus 284 ~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 360 (558)
+.+.+. +...+..+...+...|++++|...|+++... .|+..++..+..++.+.|++++|.+.++.+.+ ..+.
T Consensus 693 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~--~~~~ 768 (899)
T TIGR02917 693 KSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALKR--APSSQNAIKLHRALLASGNTAEAVKTLEAWLK--THPN 768 (899)
T ss_pred HHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCC
Confidence 887643 5667788888888999999999999988885 35557777788888999999999999988886 4456
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHH
Q 036003 361 GIKHYGCMVDLLGRAGRLDEAYRFIDEL--PIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLC 438 (558)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 438 (558)
+...+..+...|...|++++|.++|+++ ..++++.+++.+...+...|+ .+|+..++++++..|.++..+..++.+|
T Consensus 769 ~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 847 (899)
T TIGR02917 769 DAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLL 847 (899)
T ss_pred CHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 7788888999999999999999999987 323467888889999999999 8899999999999999988999999999
Q ss_pred HhcCChHHHHHHHHHHHhCCCc
Q 036003 439 ARAGRWEDVDYLRKLMKDRGVL 460 (558)
Q Consensus 439 ~~~g~~~~A~~~~~~m~~~g~~ 460 (558)
...|++++|.++++++.+.+..
T Consensus 848 ~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 848 VEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HHcCCHHHHHHHHHHHHhhCCC
Confidence 9999999999999999886643
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.96 E-value=7.7e-26 Score=249.97 Aligned_cols=423 Identities=11% Similarity=0.032 Sum_probs=362.0
Q ss_pred CHHHHHHHHHhccCCchH---HHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCC---CCcccHHHH
Q 036003 20 NTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE---PDIVLFNTM 93 (558)
Q Consensus 20 ~~~~~~~ll~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~l 93 (558)
+...+..+...+...++. ...+..+.+.. +.+...+..+...+... |++++|.+.|+++.. .+..++..+
T Consensus 464 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~~l 539 (899)
T TIGR02917 464 NASLHNLLGAIYLGKGDLAKAREAFEKALSIE-PDFFPAAANLARIDIQE---GNPDDAIQRFEKVLTIDPKNLRAILAL 539 (899)
T ss_pred CcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHhCcCcHHHHHHH
Confidence 345566666666666665 55555554432 34566778888999999 999999999998754 466788999
Q ss_pred HHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC
Q 036003 94 ARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECS 173 (558)
Q Consensus 94 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g 173 (558)
...+.+.|++++|..+|+++.+.+ +.+...+..+...+... |++++|..+++.+.+.. +.+...|..+..+|.+.|
T Consensus 540 ~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~ 615 (899)
T TIGR02917 540 AGLYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGK--GQLKKALAILNEAADAA-PDSPEAWLMLGRAQLAAG 615 (899)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHC--CCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcC
Confidence 999999999999999999998764 33566777888888888 99999999999998754 667889999999999999
Q ss_pred ChHHHHHHHhccCC---CCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHH
Q 036003 174 DVEAARRIFENISE---PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEY 250 (558)
Q Consensus 174 ~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~ 250 (558)
++++|...|+++.+ .+...+..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|++++|..+++.
T Consensus 616 ~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 694 (899)
T TIGR02917 616 DLNKAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKS 694 (899)
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 99999999998865 456678899999999999999999999998763 45678899999999999999999999999
Q ss_pred HHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--CCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHH
Q 036003 251 IKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSG--KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEIT 328 (558)
Q Consensus 251 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 328 (558)
+.+.. +.+...+..+...+.+.|++++|.+.|+.+.. ++..++..++.++.+.|++++|...++++.+.. +.+...
T Consensus 695 ~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~ 772 (899)
T TIGR02917 695 LQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVL 772 (899)
T ss_pred HHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHH
Confidence 98876 55677788899999999999999999998863 455778889999999999999999999999863 446788
Q ss_pred HHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 036003 329 FLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSS 406 (558)
Q Consensus 329 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~ 406 (558)
+..+...|...|++++|.++|+++.+ ..+.+...+..+...+...|+ .+|+.+++++ ...| ++.++..+...+..
T Consensus 773 ~~~la~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 849 (899)
T TIGR02917 773 RTALAELYLAQKDYDKAIKHYRTVVK--KAPDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVE 849 (899)
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 88999999999999999999999987 345678899999999999999 8899999987 3333 56778889999999
Q ss_pred cCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 407 HNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 407 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
.|++++|.+.++++++.+|.++.++..++.+|.+.|++++|.+++++|.+
T Consensus 850 ~g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 899 (899)
T TIGR02917 850 KGEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLLN 899 (899)
T ss_pred cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHhC
Confidence 99999999999999999999999999999999999999999999999863
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.91 E-value=2.3e-21 Score=183.53 Aligned_cols=383 Identities=14% Similarity=0.132 Sum_probs=303.5
Q ss_pred HHHHhhcCCCCCCHHHHHHHHccCCC---CCcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhc
Q 036003 59 LINFCTQNPTTSSMEHAHLLFDRIPE---PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACV 135 (558)
Q Consensus 59 li~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 135 (558)
+-..+.+. .+++....--....+ .-..+|..+...+-..|+++.|+.+|+.+.+...+ ....|..+..++...
T Consensus 88 l~ai~~q~---~r~d~s~a~~~~a~r~~~q~ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~-fida~inla~al~~~ 163 (966)
T KOG4626|consen 88 LSAIFFQG---SRLDKSSAGSLLAIRKNPQGAEAYSNLANILKERGQLQDALALYRAAIELKPK-FIDAYINLAAALVTQ 163 (966)
T ss_pred ehhhhhcc---cchhhhhhhhhhhhhccchHHHHHHHHHHHHHHhchHHHHHHHHHHHHhcCch-hhHHHhhHHHHHHhc
Confidence 33455555 555554333222222 34568888999999999999999999999885322 456777888888877
Q ss_pred CcccHHHHHHHHHHHHHhCCCChHH-HHHHHHHHHHhCCChHHHHHHHhccCC--CC-cchHHHHHHHHHHCCCccHHHH
Q 036003 136 GAEALEEGKQLHCFAIKLGLNSNLY-VCTTLINLYAECSDVEAARRIFENISE--PC-VVSYNAIITAYARSSRPNEALS 211 (558)
Q Consensus 136 ~~~~~~~a~~~~~~~~~~g~~~~~~-~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~ 211 (558)
|+.+.|.+.|.+.++. .|+.. ..+.+.......|++.+|...+.+..+ |. .+.|+.|...+..+|+...|++
T Consensus 164 --~~~~~a~~~~~~alql--nP~l~ca~s~lgnLlka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq 239 (966)
T KOG4626|consen 164 --GDLELAVQCFFEALQL--NPDLYCARSDLGNLLKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQ 239 (966)
T ss_pred --CCCcccHHHHHHHHhc--CcchhhhhcchhHHHHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHH
Confidence 8999999999888875 45544 334455666678999999888877765 43 4578889999999999999999
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-
Q 036003 212 LFRELQERNLKPT-DVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK- 289 (558)
Q Consensus 212 ~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 289 (558)
.|++..+. .|+ ...|..|...|...+.++.|...+.+..... +....++..+...|-..|.+|.|+..|++..+.
T Consensus 240 ~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lr-pn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~ 316 (966)
T KOG4626|consen 240 HYEEAVKL--DPNFLDAYINLGNVYKEARIFDRAVSCYLRALNLR-PNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ 316 (966)
T ss_pred HHHHhhcC--CCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhcC-CcchhhccceEEEEeccccHHHHHHHHHHHHhcC
Confidence 99988764 454 4578889999999999999999988887653 334666777888889999999999999987644
Q ss_pred --CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCC-hhHH
Q 036003 290 --DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDE-ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPG-IKHY 365 (558)
Q Consensus 290 --~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~ 365 (558)
=..+|+.|..++...|+..+|...|.+... ..|+. ...+.|...+...|.+++|..+|....+ +.|. ...+
T Consensus 317 P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~---v~p~~aaa~ 391 (966)
T KOG4626|consen 317 PNFPDAYNNLANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGNIYREQGKIEEATRLYLKALE---VFPEFAAAH 391 (966)
T ss_pred CCchHHHhHHHHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh---hChhhhhhh
Confidence 356799999999999999999999999887 45554 6788889999999999999999988874 3443 5678
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCC
Q 036003 366 GCMVDLLGRAGRLDEAYRFIDEL-PIKST-PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGR 443 (558)
Q Consensus 366 ~~li~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 443 (558)
+.|...|-++|++++|+..+++. .++|+ ...++.+...|-..|+.+.|.+.+.+++..+|.-..++..|+.+|-.+|+
T Consensus 392 nNLa~i~kqqgnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGn 471 (966)
T KOG4626|consen 392 NNLASIYKQQGNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGN 471 (966)
T ss_pred hhHHHHHHhcccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCC
Confidence 88999999999999999999887 77776 46888899999999999999999999999999888899999999999999
Q ss_pred hHHHHHHHHHHHhC
Q 036003 444 WEDVDYLRKLMKDR 457 (558)
Q Consensus 444 ~~~A~~~~~~m~~~ 457 (558)
+.+|..-++...+.
T Consensus 472 i~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 472 IPEAIQSYRTALKL 485 (966)
T ss_pred cHHHHHHHHHHHcc
Confidence 99999999887764
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.4e-20 Score=178.33 Aligned_cols=387 Identities=18% Similarity=0.163 Sum_probs=329.1
Q ss_pred hhHHHHHHHHhhcCCCCCCHHHHHHHHccCCC--C-CcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHH
Q 036003 53 LNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE--P-DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLL 129 (558)
Q Consensus 53 ~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 129 (558)
..+|..+.+++... |++++|..+++.+.+ | .+..|..+..++...|+.+.|.+.|.+..+ +.|+.....+-+
T Consensus 116 ae~ysn~aN~~ker---g~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~l 190 (966)
T KOG4626|consen 116 AEAYSNLANILKER---GQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDL 190 (966)
T ss_pred HHHHHHHHHHHHHh---chHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcch
Confidence 46888899999999 999999999998876 3 467899999999999999999999999887 467766655555
Q ss_pred HHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCCCC---cchHHHHHHHHHHCCCc
Q 036003 130 KACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPC---VVSYNAIITAYARSSRP 206 (558)
Q Consensus 130 ~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~ 206 (558)
..+.+.. |++++|..-+.+.++.. +-=...|+.|...+-..|++..|+..|++...-| ..+|-.|...|-..+.+
T Consensus 191 gnLlka~-Grl~ea~~cYlkAi~~q-p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~ 268 (966)
T KOG4626|consen 191 GNLLKAE-GRLEEAKACYLKAIETQ-PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIF 268 (966)
T ss_pred hHHHHhh-cccchhHHHHHHHHhhC-CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcc
Confidence 5444433 99999999999888753 2235678899999999999999999999998733 35788899999999999
Q ss_pred cHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 036003 207 NEALSLFRELQERNLKPT-DVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDN 285 (558)
Q Consensus 207 ~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 285 (558)
++|+..|.+.... .|+ ...+..+...|-..|.+|.|...+++..+.. +.-...|+.|..++-..|++.+|.+.|++
T Consensus 269 d~Avs~Y~rAl~l--rpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~-P~F~~Ay~NlanALkd~G~V~ea~~cYnk 345 (966)
T KOG4626|consen 269 DRAVSCYLRALNL--RPNHAVAHGNLACIYYEQGLLDLAIDTYKRALELQ-PNFPDAYNNLANALKDKGSVTEAVDCYNK 345 (966)
T ss_pred hHHHHHHHHHHhc--CCcchhhccceEEEEeccccHHHHHHHHHHHHhcC-CCchHHHhHHHHHHHhccchHHHHHHHHH
Confidence 9999999888764 454 5577778888999999999999999998864 23367899999999999999999999998
Q ss_pred cCC---CCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCC
Q 036003 286 MSG---KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDE-ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPG 361 (558)
Q Consensus 286 ~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 361 (558)
... ....+.+.|...|...|.+++|..+|....+ +.|.- ..++.|...|-+.|++++|...|++.. .+.|+
T Consensus 346 aL~l~p~hadam~NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~ 420 (966)
T KOG4626|consen 346 ALRLCPNHADAMNNLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPT 420 (966)
T ss_pred HHHhCCccHHHHHHHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCch
Confidence 763 3677889999999999999999999999988 66664 678999999999999999999999998 56776
Q ss_pred -hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHH
Q 036003 362 -IKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKST-PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLC 438 (558)
Q Consensus 362 -~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 438 (558)
...|+.+...|-..|+.+.|.+.+.+. .+.|. ...++.|...|...|++.+|++.++.++++.|+-+.+|..++.++
T Consensus 421 fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~l 500 (966)
T KOG4626|consen 421 FADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCL 500 (966)
T ss_pred HHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHH
Confidence 678999999999999999999999987 66665 467889999999999999999999999999999999999999888
Q ss_pred HhcCChHHHHHHHHHH
Q 036003 439 ARAGRWEDVDYLRKLM 454 (558)
Q Consensus 439 ~~~g~~~~A~~~~~~m 454 (558)
.-..+|.+-.+-++++
T Consensus 501 q~vcdw~D~d~~~~kl 516 (966)
T KOG4626|consen 501 QIVCDWTDYDKRMKKL 516 (966)
T ss_pred HHHhcccchHHHHHHH
Confidence 7777776654444444
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.89 E-value=1.8e-20 Score=185.97 Aligned_cols=290 Identities=11% Similarity=0.066 Sum_probs=178.9
Q ss_pred hCCChHHHHHHHhccCC--C-CcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCC---HHHHHHHHHHHhccCChHHH
Q 036003 171 ECSDVEAARRIFENISE--P-CVVSYNAIITAYARSSRPNEALSLFRELQERNLKPT---DVTMLSALSSCALLGSLDLG 244 (558)
Q Consensus 171 ~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~---~~~~~~ll~~~~~~~~~~~a 244 (558)
..|++++|...|+++.+ | +..++..+...+.+.|++++|..+++.+...+..++ ...+..+...+.+.|++++|
T Consensus 47 ~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A 126 (389)
T PRK11788 47 LNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRA 126 (389)
T ss_pred hcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 33444444444444432 1 122344444444444444444444444443211111 12333444444444444444
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCC--------HHhHHHHHHHHHHCCChHHHHHHHHH
Q 036003 245 KWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKD--------TQAWSAMIVAYATHGQGHKSILMFEE 316 (558)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~li~~~~~~~~~~~a~~~~~~ 316 (558)
..+|+++.+.. +.+..+++.++.++.+.|++++|.+.++.+.+.+ ...|..+...+.+.|++++|...|++
T Consensus 127 ~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 205 (389)
T PRK11788 127 EELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKK 205 (389)
T ss_pred HHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 44444444331 2233444445555555555555555554443211 11345566677778888888888888
Q ss_pred HHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH
Q 036003 317 MMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKSTPI 395 (558)
Q Consensus 317 m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~~ 395 (558)
+.+.. +.+...+..+...+.+.|++++|.++|+++... .......++..++.+|.+.|++++|.+.++++ ...|+..
T Consensus 206 al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~-~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~ 283 (389)
T PRK11788 206 ALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQ-DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGAD 283 (389)
T ss_pred HHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCch
Confidence 87643 223456777778888888888888888888753 22222456778888889999999999988887 4467766
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHh---cCChHHHHHHHHHHHhCCCccCCc
Q 036003 396 LWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCAR---AGRWEDVDYLRKLMKDRGVLKVPG 464 (558)
Q Consensus 396 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~---~g~~~~A~~~~~~m~~~g~~~~~~ 464 (558)
.+..++..+.+.|++++|..+++++++..|++. .+..++..+.. .|+.+++..++++|.++++.|+|.
T Consensus 284 ~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~ 354 (389)
T PRK11788 284 LLLALAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCC
Confidence 678888899999999999999999998888764 55556655553 458999999999999999988886
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.88 E-value=8.1e-19 Score=183.33 Aligned_cols=389 Identities=13% Similarity=0.045 Sum_probs=278.5
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHccCCC--CCcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCC-CcccHHHHHHHH
Q 036003 56 LTKLINFCTQNPTTSSMEHAHLLFDRIPE--PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLP-DDYSFPSLLKAC 132 (558)
Q Consensus 56 ~~~li~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~ 132 (558)
+......|.+. |++++|.+.|++... |+...|..+..+|.+.|++++|+..++...+. .| +...|..+-.++
T Consensus 130 ~k~~G~~~~~~---~~~~~Ai~~y~~al~~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l--~p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 130 LKEKGNKAYRN---KDFNKAIKLYSKAIECKPDPVYYSNRAACHNALGDWEKVVEDTTAALEL--DPDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHc---CCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 33455567777 888888888887654 66677778888888888888888888887764 33 344666677777
Q ss_pred HhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCC-------------------------
Q 036003 133 ACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE------------------------- 187 (558)
Q Consensus 133 ~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~------------------------- 187 (558)
... |++++|...|..+...+-..+.. ...++..+........+...++.-..
T Consensus 205 ~~l--g~~~eA~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (615)
T TIGR00990 205 DGL--GKYADALLDLTASCIIDGFRNEQ-SAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLE 281 (615)
T ss_pred HHc--CCHHHHHHHHHHHHHhCCCccHH-HHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhh
Confidence 777 88888877776554432111111 11111111110011112222111110
Q ss_pred ----CCc---chHHHHHHHH---HHCCCccHHHHHHHHHHHCC-CCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHhC
Q 036003 188 ----PCV---VSYNAIITAY---ARSSRPNEALSLFRELQERN-LKP-TDVTMLSALSSCALLGSLDLGKWIHEYIKKYG 255 (558)
Q Consensus 188 ----~~~---~~~~~li~~~---~~~g~~~~A~~~~~~m~~~~-~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 255 (558)
.+. ..+..+...+ ...+++++|.+.|++..+.+ ..| ....+..+...+...|++++|...+++..+..
T Consensus 282 ~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~ 361 (615)
T TIGR00990 282 DSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELD 361 (615)
T ss_pred cccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 000 0111111111 12367899999999988764 234 34567778888889999999999999998864
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCC-CHHHHHH
Q 036003 256 LDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSG---KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP-DEITFLG 331 (558)
Q Consensus 256 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ 331 (558)
+.+...|..+..++...|++++|...|+...+ .+...|..+...+...|++++|+..|++..+. .| +...+..
T Consensus 362 -P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l--~P~~~~~~~~ 438 (615)
T TIGR00990 362 -PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDL--DPDFIFSHIQ 438 (615)
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CccCHHHHHH
Confidence 33456778889999999999999999998753 36788999999999999999999999999985 44 4567778
Q ss_pred HHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH--------HHHHHHHH
Q 036003 332 LLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKSTP--------ILWRTLLS 402 (558)
Q Consensus 332 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~--------~~~~~l~~ 402 (558)
+...+.+.|++++|...|++... ..+.+...+..+...+...|++++|++.|++. ...|+. ..++..+.
T Consensus 439 la~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~ 516 (615)
T TIGR00990 439 LGVTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALA 516 (615)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHH
Confidence 88899999999999999999986 34556788999999999999999999999986 333321 11222233
Q ss_pred HHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhC
Q 036003 403 SCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 403 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
.+...|++++|.++++++++++|.+..++..++.+|.+.|++++|.+.|++..+.
T Consensus 517 ~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l 571 (615)
T TIGR00990 517 LFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAEL 571 (615)
T ss_pred HHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3445799999999999999999999889999999999999999999999998764
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=5.4e-18 Score=188.70 Aligned_cols=259 Identities=10% Similarity=-0.006 Sum_probs=194.0
Q ss_pred HHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 036003 195 AIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCG 274 (558)
Q Consensus 195 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 274 (558)
.+...+...|++++|++.|++..+.. +-+...+..+...+.+.|++++|...++++.+.. +.+...+..+...+...|
T Consensus 466 ~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~ 543 (1157)
T PRK11447 466 QQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSD 543 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCC
Confidence 34455667788888888888877652 2245566677778888888888888888877654 233444444555567778
Q ss_pred CHHHHHHHHhccCCC----CH---------HhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 036003 275 RLDDAVSVFDNMSGK----DT---------QAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGL 341 (558)
Q Consensus 275 ~~~~A~~~~~~~~~~----~~---------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 341 (558)
+.++|...++.+... +. ..+..+...+...|+.++|..+++. .+.+...+..+...+.+.|+
T Consensus 544 ~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~ 618 (1157)
T PRK11447 544 RDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGD 618 (1157)
T ss_pred CHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCC
Confidence 888888888877532 11 1123445677888999999988872 23455667788889999999
Q ss_pred hHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036003 342 VDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIER 419 (558)
Q Consensus 342 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~ 419 (558)
+++|...|+++.+ .-+.+...+..++..|...|++++|++.++.. ...| +...+..+..++...|++++|.+++++
T Consensus 619 ~~~A~~~y~~al~--~~P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~ 696 (1157)
T PRK11447 619 YAAARAAYQRVLT--REPGNADARLGLIEVDIAQGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNR 696 (1157)
T ss_pred HHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 9999999999987 33456788999999999999999999999987 3344 456677788899999999999999999
Q ss_pred HHccCCCCc------ccHHhHHHHHHhcCChHHHHHHHHHHH-hCCCccC
Q 036003 420 IFELDDSHG------GDYVILSNLCARAGRWEDVDYLRKLMK-DRGVLKV 462 (558)
Q Consensus 420 ~~~~~~~~~------~~~~~l~~~~~~~g~~~~A~~~~~~m~-~~g~~~~ 462 (558)
+++..|+++ ..+..++..+...|++++|...|++.. ..|+.|.
T Consensus 697 al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al~~~~~~~~ 746 (1157)
T PRK11447 697 LIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAMVASGITPT 746 (1157)
T ss_pred HhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcCCCCC
Confidence 998775543 256667889999999999999998875 3455443
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.2e-18 Score=190.45 Aligned_cols=386 Identities=13% Similarity=0.097 Sum_probs=302.1
Q ss_pred HHHHhhcCCCCCCHHHHHHHHccCCC--C-CcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCC-cccHHHH------
Q 036003 59 LINFCTQNPTTSSMEHAHLLFDRIPE--P-DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPD-DYSFPSL------ 128 (558)
Q Consensus 59 li~~~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~l------ 128 (558)
....+... |++++|+..|++..+ | +...+..+...+.+.|++++|+..|++..+...... ...+..+
T Consensus 275 ~G~~~~~~---g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~ 351 (1157)
T PRK11447 275 QGLAAVDS---GQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRY 351 (1157)
T ss_pred HHHHHHHC---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhH
Confidence 34566777 999999999998754 3 667889999999999999999999999987532211 1112111
Q ss_pred ------HHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCC--C-CcchHHHHHHH
Q 036003 129 ------LKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE--P-CVVSYNAIITA 199 (558)
Q Consensus 129 ------l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~ 199 (558)
...+... |++++|...|+++++.. +.+...+..+..++...|++++|++.|+++.+ | +...+..+...
T Consensus 352 ~~~~~~g~~~~~~--g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l 428 (1157)
T PRK11447 352 WLLIQQGDAALKA--NNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANL 428 (1157)
T ss_pred HHHHHHHHHHHHC--CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 2344566 99999999999999875 45667788899999999999999999999875 3 34566667777
Q ss_pred HHHCCCccHHHHHHHHHHHCCCC--------CCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 036003 200 YARSSRPNEALSLFRELQERNLK--------PTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHA 271 (558)
Q Consensus 200 ~~~~g~~~~A~~~~~~m~~~~~~--------p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 271 (558)
|. .++.++|+.+++.+...... .....+..+...+...|++++|...+++..+.. +.+...+..+...|.
T Consensus 429 ~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~LA~~~~ 506 (1157)
T PRK11447 429 YR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALD-PGSVWLTYRLAQDLR 506 (1157)
T ss_pred HH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 64 46789999998776432100 011234556677888999999999999999875 335667777999999
Q ss_pred hcCCHHHHHHHHhccCC--C-CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHH---------HHHHHHHHHHcc
Q 036003 272 KCGRLDDAVSVFDNMSG--K-DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEI---------TFLGLLYACSHT 339 (558)
Q Consensus 272 ~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---------~~~~ll~~~~~~ 339 (558)
+.|++++|...|+++.+ + +...+..+...+...++.++|+..++.+......++.. .+..+...+...
T Consensus 507 ~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~ 586 (1157)
T PRK11447 507 QAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDS 586 (1157)
T ss_pred HcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHC
Confidence 99999999999998753 2 56666666667788999999999998865433222221 223456678889
Q ss_pred CChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 036003 340 GLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVI 417 (558)
Q Consensus 340 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~ 417 (558)
|+.++|.++++. .+.+...+..+...+.+.|++++|++.|++. ...| +...+..++..+...|++++|++.+
T Consensus 587 G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~eA~~~l 660 (1157)
T PRK11447 587 GKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLAAARAQL 660 (1157)
T ss_pred CCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 999999999872 2345667788999999999999999999988 3344 5788999999999999999999999
Q ss_pred HHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhCC
Q 036003 418 ERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRG 458 (558)
Q Consensus 418 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 458 (558)
+++.+..|+++..+..++.++...|++++|.++++++....
T Consensus 661 ~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~ 701 (1157)
T PRK11447 661 AKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhC
Confidence 99999999998999999999999999999999999998654
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=2.7e-19 Score=177.60 Aligned_cols=282 Identities=15% Similarity=0.144 Sum_probs=196.9
Q ss_pred ccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCC-CC------cchHHHHHHHHHHCCCccHHH
Q 036003 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE-PC------VVSYNAIITAYARSSRPNEAL 210 (558)
Q Consensus 138 ~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-~~------~~~~~~li~~~~~~g~~~~A~ 210 (558)
|++++|...|+++.+.+ +.+..++..+...+.+.|++++|..+++.+.. ++ ...+..++..|.+.|++++|.
T Consensus 49 ~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~~~~A~ 127 (389)
T PRK11788 49 EQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGLLDRAE 127 (389)
T ss_pred CChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 55555666665555543 22344555555556666666666666555543 11 123555666666666666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCc----hhHHHHHHHHHHhcCCHHHHHHHHhcc
Q 036003 211 SLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKY----VKVNTALIDMHAKCGRLDDAVSVFDNM 286 (558)
Q Consensus 211 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~ 286 (558)
.+|+++.+.. +.+..++..++..+.+.|++++|...++.+.+.+..+. ...+..+...+.+.|++++|...|+++
T Consensus 128 ~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 206 (389)
T PRK11788 128 ELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKA 206 (389)
T ss_pred HHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHH
Confidence 6666666542 33455666666666667777777777666665543221 123445667777888888888888876
Q ss_pred CCC---CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChh
Q 036003 287 SGK---DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIK 363 (558)
Q Consensus 287 ~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 363 (558)
.+. +...+..+...+.+.|++++|.++|+++.+.+......++..++.+|...|++++|...++++.+. .|+..
T Consensus 207 l~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~ 283 (389)
T PRK11788 207 LAADPQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEE---YPGAD 283 (389)
T ss_pred HhHCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCch
Confidence 532 456777888899999999999999999987532222456788899999999999999999998853 46667
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHHHHccC
Q 036003 364 HYGCMVDLLGRAGRLDEAYRFIDEL-PIKSTPILWRTLLSSCSS---HNNLGLAKQVIERIFELD 424 (558)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~ 424 (558)
.+..++..+.+.|++++|..+++++ ...|+...++.++..+.. .|+.+++..+++++++..
T Consensus 284 ~~~~la~~~~~~g~~~~A~~~l~~~l~~~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~ 348 (389)
T PRK11788 284 LLLALAQLLEEQEGPEAAQALLREQLRRHPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQ 348 (389)
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhCcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHH
Confidence 7788999999999999999999876 557898889888887764 568899999999888644
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.87 E-value=3.7e-18 Score=177.77 Aligned_cols=349 Identities=11% Similarity=0.010 Sum_probs=275.9
Q ss_pred CCHHHHHHHHccCCC------CCcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHH
Q 036003 70 SSMEHAHLLFDRIPE------PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEG 143 (558)
Q Consensus 70 ~~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a 143 (558)
.+++...-.|...++ .+..-...++..+.+.|++++|+.+++........+ ...+..+..+.... |++++|
T Consensus 19 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~-~~~l~~l~~~~l~~--g~~~~A 95 (656)
T PRK15174 19 EDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRKDETDVGLTLLSDRVLTAKNG-RDLLRRWVISPLAS--SQPDAV 95 (656)
T ss_pred hchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhcCCcchhHHHhHHHHHhCCCc-hhHHHHHhhhHhhc--CCHHHH
Confidence 566666666655543 233345566788889999999999999998864443 33444455555566 999999
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCC---CCcchHHHHHHHHHHCCCccHHHHHHHHHHHCC
Q 036003 144 KQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE---PCVVSYNAIITAYARSSRPNEALSLFRELQERN 220 (558)
Q Consensus 144 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 220 (558)
...++++.+.. +.+...+..+...+.+.|++++|...|++..+ .+...+..+...+...|++++|...++.+....
T Consensus 96 ~~~l~~~l~~~-P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~ 174 (656)
T PRK15174 96 LQVVNKLLAVN-VCQPEDVLLVASVLLKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEV 174 (656)
T ss_pred HHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhC
Confidence 99999999875 55677888899999999999999999999876 345678889999999999999999999887653
Q ss_pred CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC---CHHhHHHH
Q 036003 221 LKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK---DTQAWSAM 297 (558)
Q Consensus 221 ~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~l 297 (558)
. .+...+.. +..+...|++++|...++.+.+....++...+..+..++.+.|++++|+..|+..... +...+..+
T Consensus 175 P-~~~~a~~~-~~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~L 252 (656)
T PRK15174 175 P-PRGDMIAT-CLSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSL 252 (656)
T ss_pred C-CCHHHHHH-HHHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 2 23333333 3447889999999999999887654444555566678899999999999999987643 67788889
Q ss_pred HHHHHHCCChHH----HHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHH
Q 036003 298 IVAYATHGQGHK----SILMFEEMMKAQVSP-DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLL 372 (558)
Q Consensus 298 i~~~~~~~~~~~----a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 372 (558)
...+...|++++ |...|++..+. .| +...+..+...+...|++++|...+++.... -+.+...+..+..+|
T Consensus 253 g~~l~~~G~~~eA~~~A~~~~~~Al~l--~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l--~P~~~~a~~~La~~l 328 (656)
T PRK15174 253 GLAYYQSGRSREAKLQAAEHWRHALQF--NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT--HPDLPYVRAMYARAL 328 (656)
T ss_pred HHHHHHcCCchhhHHHHHHHHHHHHhh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 999999999986 89999999884 45 4578888999999999999999999999863 334566778889999
Q ss_pred hhcCCHHHHHHHHHhC-CCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHccCCCCc
Q 036003 373 GRAGRLDEAYRFIDEL-PIKSTPIL-WRTLLSSCSSHNNLGLAKQVIERIFELDDSHG 428 (558)
Q Consensus 373 ~~~g~~~~A~~~~~~~-~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 428 (558)
.+.|++++|...|+++ ...|+... +..+..++...|+.++|...|+++++..|.+.
T Consensus 329 ~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 329 RQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred HHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 9999999999999987 44565433 44457788999999999999999999998763
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=3.5e-17 Score=174.15 Aligned_cols=394 Identities=12% Similarity=0.045 Sum_probs=252.8
Q ss_pred ChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCC---CCcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCC-cccHHH
Q 036003 52 DLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE---PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPD-DYSFPS 127 (558)
Q Consensus 52 ~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ 127 (558)
+.....-.+.+.... |+.++|++++.+... .+...+..+...+.+.|++++|+.+|++..+. .|+ ...+..
T Consensus 14 ~~~~~~d~~~ia~~~---g~~~~A~~~~~~~~~~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~ 88 (765)
T PRK10049 14 SNNQIADWLQIALWA---GQDAEVITVYNRYRVHMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSL--EPQNDDYQRG 88 (765)
T ss_pred CHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 333444445555666 777777777777653 23334777777777778888888888777664 333 344555
Q ss_pred HHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCC--C-CcchHHHHHHHHHHCC
Q 036003 128 LLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE--P-CVVSYNAIITAYARSS 204 (558)
Q Consensus 128 ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g 204 (558)
+...+... |+.++|...++++++.. +.+.. +..+..++...|+.++|+..++++.+ | +...+..+...+...+
T Consensus 89 la~~l~~~--g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~ 164 (765)
T PRK10049 89 LILTLADA--GQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNR 164 (765)
T ss_pred HHHHHHHC--CCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCC
Confidence 55566666 77888888887777663 33445 66777777777888888877777765 3 3344555666677777
Q ss_pred CccHHHHHHHHHHHCCCCCCH------HHHHHHHHHHh-----ccCCh---HHHHHHHHHHHHh-CCCCchh-HH----H
Q 036003 205 RPNEALSLFRELQERNLKPTD------VTMLSALSSCA-----LLGSL---DLGKWIHEYIKKY-GLDKYVK-VN----T 264 (558)
Q Consensus 205 ~~~~A~~~~~~m~~~~~~p~~------~~~~~ll~~~~-----~~~~~---~~a~~~~~~~~~~-~~~~~~~-~~----~ 264 (558)
..++|++.++.... .|+. .....++.... ..+++ ++|...++.+.+. ...|+.. .+ .
T Consensus 165 ~~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~ 241 (765)
T PRK10049 165 LSAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARI 241 (765)
T ss_pred ChHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHH
Confidence 77777777765543 2221 01111222221 11223 5667777777654 1222211 11 1
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCCCC---H-HhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHH
Q 036003 265 ALIDMHAKCGRLDDAVSVFDNMSGKD---T-QAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP---DEITFLGLLYACS 337 (558)
Q Consensus 265 ~l~~~~~~~g~~~~A~~~~~~~~~~~---~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~ll~~~~ 337 (558)
..+.++...|++++|+..|+.+.+.+ + ..-..+..+|...|++++|+..|+++.+..... .......+..++.
T Consensus 242 d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~ 321 (765)
T PRK10049 242 DRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLL 321 (765)
T ss_pred HHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHH
Confidence 11234456688888888888876542 1 112224667888888888888888877643111 1234555666778
Q ss_pred ccCChHHHHHHHHHchhhcC----------CCCC---hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHH
Q 036003 338 HTGLVDEGWNYFYSMRDKYG----------IVPG---IKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLS 402 (558)
Q Consensus 338 ~~g~~~~a~~~~~~~~~~~~----------~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~ 402 (558)
..|++++|.++++.+..... -.|+ ...+..+...+...|++++|+++++++ ...| +...+..+..
T Consensus 322 ~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~ 401 (765)
T PRK10049 322 ESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYAS 401 (765)
T ss_pred hcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 88888888888888775310 0122 234456677788888888888888886 2233 5677788888
Q ss_pred HHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhC
Q 036003 403 SCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 403 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
.+...|++++|++.++++++..|++...+..++..+.+.|++++|..+++++.+.
T Consensus 402 l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 402 VLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred HHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 8888888888888888888888888888888888888888888888888888763
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.84 E-value=2.2e-17 Score=171.96 Aligned_cols=353 Identities=8% Similarity=-0.024 Sum_probs=277.3
Q ss_pred HhcCCCchHHHHHHHHhHHCC--CCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC
Q 036003 97 YSRSKTPIRAIFLFVELLNSG--LLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSD 174 (558)
Q Consensus 97 ~~~~g~~~~A~~~~~~m~~~g--~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 174 (558)
+.++.+|+.-.-.|....+.- -.-+..-...++..+... |+.++|..+++..+..... +......++.++...|+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~A~~l~~~~l~~~p~-~~~~l~~l~~~~l~~g~ 91 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVRDSAGNEQNIILFAIACLRK--DETDVGLTLLSDRVLTAKN-GRDLLRRWVISPLASSQ 91 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhhhhcccccCHHHHHHHHHhc--CCcchhHHHhHHHHHhCCC-chhHHHHHhhhHhhcCC
Confidence 345666665555554443220 011233445566667777 9999999999999987543 44555556677778999
Q ss_pred hHHHHHHHhccCC---CCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 036003 175 VEAARRIFENISE---PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251 (558)
Q Consensus 175 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 251 (558)
+++|...|+++.. .+...|..+...+.+.|++++|...|++..+.. +.+...+..+..++...|++++|...++.+
T Consensus 92 ~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~eA~~~~~~~ 170 (656)
T PRK15174 92 PDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQAISLARTQ 170 (656)
T ss_pred HHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHHHHHHHHHH
Confidence 9999999999976 345678888999999999999999999998752 335667888899999999999999999988
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC----CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHH
Q 036003 252 KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK----DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEI 327 (558)
Q Consensus 252 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 327 (558)
......+ ...+..+ ..+...|++++|...++.+.+. +...+..+..++.+.|++++|+..++++.+.. +.+..
T Consensus 171 ~~~~P~~-~~a~~~~-~~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~-p~~~~ 247 (656)
T PRK15174 171 AQEVPPR-GDMIATC-LSFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARG-LDGAA 247 (656)
T ss_pred HHhCCCC-HHHHHHH-HHHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHH
Confidence 7765333 3333333 3478899999999999987643 23344556778899999999999999999854 22467
Q ss_pred HHHHHHHHHHccCChHH----HHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 036003 328 TFLGLLYACSHTGLVDE----GWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLL 401 (558)
Q Consensus 328 ~~~~ll~~~~~~g~~~~----a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~ 401 (558)
.+..+...+...|++++ |...|+++.. -.+.+...+..+...+.+.|++++|...+++. ...| +...+..+.
T Consensus 248 ~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La 325 (656)
T PRK15174 248 LRRSLGLAYYQSGRSREAKLQAAEHWRHALQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYA 325 (656)
T ss_pred HHHHHHHHHHHcCCchhhHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 77788899999999986 8999999986 33446778999999999999999999999987 3345 456778889
Q ss_pred HHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhCC
Q 036003 402 SSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRG 458 (558)
Q Consensus 402 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 458 (558)
.++...|++++|...++++.+.+|.+...+..++.++...|++++|.+.|++..+..
T Consensus 326 ~~l~~~G~~~eA~~~l~~al~~~P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 326 RALRQVGQYTAASDEFVQLAREKGVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999887667777889999999999999999987653
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.83 E-value=5.5e-16 Score=165.12 Aligned_cols=398 Identities=8% Similarity=-0.044 Sum_probs=299.3
Q ss_pred HHHHHHHHHhccCCchHHHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCC---CCcccHHHHHHHH
Q 036003 21 TPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE---PDIVLFNTMARGY 97 (558)
Q Consensus 21 ~~~~~~ll~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~ 97 (558)
...|..+....++......++...... -+.+...+..+..++.+. |++++|..+|++..+ .+...+..+...+
T Consensus 18 ~~d~~~ia~~~g~~~~A~~~~~~~~~~-~~~~a~~~~~lA~~~~~~---g~~~~A~~~~~~al~~~P~~~~a~~~la~~l 93 (765)
T PRK10049 18 IADWLQIALWAGQDAEVITVYNRYRVH-MQLPARGYAAVAVAYRNL---KQWQNSLTLWQKALSLEPQNDDYQRGLILTL 93 (765)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh-CCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 455777777777766667777666552 244555788999999999 999999999999543 3566778888999
Q ss_pred hcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHH
Q 036003 98 SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEA 177 (558)
Q Consensus 98 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~ 177 (558)
...|++++|+..+++..+. .|+...+..+..++... |+.++|...++++.+.. +.+...+..+..++.+.|..+.
T Consensus 94 ~~~g~~~eA~~~l~~~l~~--~P~~~~~~~la~~l~~~--g~~~~Al~~l~~al~~~-P~~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 94 ADAGQYDEALVKAKQLVSG--APDKANLLALAYVYKRA--GRHWDELRAMTQALPRA-PQTQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHC--CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCChHH
Confidence 9999999999999999876 34333377777777777 99999999999999975 4456666778888999999999
Q ss_pred HHHHHhccCC-CCc------chHHHHHHHHHH-----CCCc---cHHHHHHHHHHHC-CCCCCHH-HHH----HHHHHHh
Q 036003 178 ARRIFENISE-PCV------VSYNAIITAYAR-----SSRP---NEALSLFRELQER-NLKPTDV-TML----SALSSCA 236 (558)
Q Consensus 178 A~~~~~~~~~-~~~------~~~~~li~~~~~-----~g~~---~~A~~~~~~m~~~-~~~p~~~-~~~----~ll~~~~ 236 (558)
|.+.++.... |+. .....++..... .+++ ++|++.++.+.+. ...|+.. .+. ..+.++.
T Consensus 169 Al~~l~~~~~~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~~~~~a~~d~l~~Ll 248 (765)
T PRK10049 169 ALGAIDDANLTPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATADYQRARIDRLGALL 248 (765)
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHHHH
Confidence 9999998776 221 012222332221 2233 6788888888754 2233321 111 1134456
Q ss_pred ccCChHHHHHHHHHHHHhCCC-CchhHHHHHHHHHHhcCCHHHHHHHHhccCCCC-------HHhHHHHHHHHHHCCChH
Q 036003 237 LLGSLDLGKWIHEYIKKYGLD-KYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKD-------TQAWSAMIVAYATHGQGH 308 (558)
Q Consensus 237 ~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~~~~~ 308 (558)
..|++++|...|+.+.+.+.+ |+. ....+..+|...|++++|+.+|+++...+ ...+..+..++.+.|+++
T Consensus 249 ~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~ 327 (765)
T PRK10049 249 ARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYP 327 (765)
T ss_pred HhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHH
Confidence 779999999999999887632 322 22225778999999999999999876432 234566777889999999
Q ss_pred HHHHHHHHHHHCC-----------CCCCH---HHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhh
Q 036003 309 KSILMFEEMMKAQ-----------VSPDE---ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR 374 (558)
Q Consensus 309 ~a~~~~~~m~~~g-----------~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 374 (558)
+|..+++++.... -.|+. ..+..+...+...|++++|+++++++.. ..+.+...+..+...+..
T Consensus 328 eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~--~~P~n~~l~~~lA~l~~~ 405 (765)
T PRK10049 328 GALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY--NAPGNQGLRIDYASVLQA 405 (765)
T ss_pred HHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHh
Confidence 9999999998752 12332 3455677788899999999999999986 456678889999999999
Q ss_pred cCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCccc
Q 036003 375 AGRLDEAYRFIDEL-PIKST-PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGD 430 (558)
Q Consensus 375 ~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 430 (558)
.|++++|++.+++. ...|+ ...+..++..+...|++++|+.+++++++..|+++.+
T Consensus 406 ~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~ 463 (765)
T PRK10049 406 RGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGV 463 (765)
T ss_pred cCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHH
Confidence 99999999999997 44565 5677777788999999999999999999999998744
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.81 E-value=1.8e-16 Score=165.77 Aligned_cols=357 Identities=13% Similarity=0.004 Sum_probs=263.5
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 036003 90 FNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLY 169 (558)
Q Consensus 90 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~ 169 (558)
+......+.+.|++++|+..|++..+ +.|+...|..+..++... |++++|...++..++.. +.+...+..+..+|
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l--~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~ 204 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNAL--GDWEKVVEDTTAALELD-PDYSKALNRRANAY 204 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHh--CCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHH
Confidence 44567788899999999999999887 467888888898899999 99999999999999865 44677888899999
Q ss_pred HhCCChHHHHHHHhccCCC---CcchHHHHHHHHHHCCCccHHHHHHHHHHHCC--------------------------
Q 036003 170 AECSDVEAARRIFENISEP---CVVSYNAIITAYARSSRPNEALSLFRELQERN-------------------------- 220 (558)
Q Consensus 170 ~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-------------------------- 220 (558)
...|++++|+..|...... +......++..+.. ..+........+..
T Consensus 205 ~~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (615)
T TIGR00990 205 DGLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGL 280 (615)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhh
Confidence 9999999999887655321 11111111111111 01111111111100
Q ss_pred -----CCCCH-HHHHHHHHH---HhccCChHHHHHHHHHHHHhC-C-CCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC
Q 036003 221 -----LKPTD-VTMLSALSS---CALLGSLDLGKWIHEYIKKYG-L-DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK 289 (558)
Q Consensus 221 -----~~p~~-~~~~~ll~~---~~~~~~~~~a~~~~~~~~~~~-~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 289 (558)
..++. ..+..+... ....+++++|...|+...+.+ . +.....++.+...+...|++++|+..|++..+.
T Consensus 281 ~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l 360 (615)
T TIGR00990 281 EDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL 360 (615)
T ss_pred hcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 00000 000111100 123467899999999998765 2 334567888889999999999999999987643
Q ss_pred ---CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHH
Q 036003 290 ---DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYG 366 (558)
Q Consensus 290 ---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 366 (558)
+...|..+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...|++... ..+.+...+.
T Consensus 361 ~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~~~~ 437 (615)
T TIGR00990 361 DPRVTQSYIKRASMNLELGDPDKAEEDFDKALKLN-SEDPDIYYHRAQLHFIKGEFAQAGKDYQKSID--LDPDFIFSHI 437 (615)
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCccCHHHHH
Confidence 46678889999999999999999999998853 22467888899999999999999999999986 3344577788
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHh-------HHHH
Q 036003 367 CMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVI-------LSNL 437 (558)
Q Consensus 367 ~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-------l~~~ 437 (558)
.+...+.+.|++++|+..|++. ...| +...++.+...+...|++++|...|++++++.|.+...+.. .+..
T Consensus 438 ~la~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~ 517 (615)
T TIGR00990 438 QLGVTQYKEGSIASSMATFRRCKKNFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALAL 517 (615)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHH
Confidence 8999999999999999999987 3344 57788999999999999999999999999998865443322 1223
Q ss_pred HHhcCChHHHHHHHHHHHhCC
Q 036003 438 CARAGRWEDVDYLRKLMKDRG 458 (558)
Q Consensus 438 ~~~~g~~~~A~~~~~~m~~~g 458 (558)
+...|++++|.+++++....+
T Consensus 518 ~~~~~~~~eA~~~~~kAl~l~ 538 (615)
T TIGR00990 518 FQWKQDFIEAENLCEKALIID 538 (615)
T ss_pred HHHhhhHHHHHHHHHHHHhcC
Confidence 445699999999999987653
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.79 E-value=1e-14 Score=152.53 Aligned_cols=391 Identities=12% Similarity=0.065 Sum_probs=241.1
Q ss_pred HHHHHhhcCCCCCCHHHHHHHHccCCCCCcccHHHH---HHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHh
Q 036003 58 KLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTM---ARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134 (558)
Q Consensus 58 ~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l---i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 134 (558)
.++..+... |+.++|+..+++...|+...+..+ ...+...|++++|+++|+++.+.... +...+..++..+..
T Consensus 73 dll~l~~~~---G~~~~A~~~~eka~~p~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~-n~~~l~gLa~~y~~ 148 (822)
T PRK14574 73 DWLQIAGWA---GRDQEVIDVYERYQSSMNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPT-NPDLISGMIMTQAD 148 (822)
T ss_pred HHHHHHHHc---CCcHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CHHHHHHHHHHHhh
Confidence 555555555 566666666655554433332222 23444456666666666665554221 23334444444444
Q ss_pred cCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCC--C-CcchHHHHHHHHHHCCCccHHHH
Q 036003 135 VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE--P-CVVSYNAIITAYARSSRPNEALS 211 (558)
Q Consensus 135 ~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~ 211 (558)
. ++.++|++.++.+... .|+...+..++..+...++..+|++.++++.+ | +...+..+..++.+.|-...|.+
T Consensus 149 ~--~q~~eAl~~l~~l~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~ 224 (822)
T PRK14574 149 A--GRGGVVLKQATELAER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALR 224 (822)
T ss_pred c--CCHHHHHHHHHHhccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHH
Confidence 4 5555566555555543 33333333333333334444445555555543 2 33344555555555555555555
Q ss_pred HHHHHHHCCCCCCHHH------HHHHHHHH-----hccCCh---HHHHHHHHHHHHh-CC-CCchh----HHHHHHHHHH
Q 036003 212 LFRELQERNLKPTDVT------MLSALSSC-----ALLGSL---DLGKWIHEYIKKY-GL-DKYVK----VNTALIDMHA 271 (558)
Q Consensus 212 ~~~~m~~~~~~p~~~~------~~~ll~~~-----~~~~~~---~~a~~~~~~~~~~-~~-~~~~~----~~~~l~~~~~ 271 (558)
+..+-... +.+...- ....++.- ....++ +.|..-++.+... +. ++... ...-.+-++.
T Consensus 225 l~~~~p~~-f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~ 303 (822)
T PRK14574 225 LAKENPNL-VSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALL 303 (822)
T ss_pred HHHhCccc-cCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHH
Confidence 54432211 1111100 00111000 011122 2333333343331 11 22212 2223456778
Q ss_pred hcCCHHHHHHHHhccCCC----CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCC-----CCCCHHHHHHHHHHHHccCCh
Q 036003 272 KCGRLDDAVSVFDNMSGK----DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ-----VSPDEITFLGLLYACSHTGLV 342 (558)
Q Consensus 272 ~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-----~~p~~~~~~~ll~~~~~~g~~ 342 (558)
+.|+..++++.|+.+... ...+--.+..+|...+++++|+.+|+++.... ..++......|.-++...+++
T Consensus 304 ~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~ 383 (822)
T PRK14574 304 VRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQL 383 (822)
T ss_pred HhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccH
Confidence 889999999999999844 34456778899999999999999999997643 122334457889999999999
Q ss_pred HHHHHHHHHchhhcC----------CCCC---hhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhc
Q 036003 343 DEGWNYFYSMRDKYG----------IVPG---IKHYGCMVDLLGRAGRLDEAYRFIDEL--PIKSTPILWRTLLSSCSSH 407 (558)
Q Consensus 343 ~~a~~~~~~~~~~~~----------~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~ 407 (558)
++|..+++.+.+... -.|+ ...+..++..+...|++.+|++.++++ ..+.|......+...+...
T Consensus 384 ~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~n~~l~~~~A~v~~~R 463 (822)
T PRK14574 384 DKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPANQNLRIALASIYLAR 463 (822)
T ss_pred HHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhc
Confidence 999999999987311 0122 234456678889999999999999998 3334788889999999999
Q ss_pred CCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhC
Q 036003 408 NNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 408 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
|.+.+|++.++.+..++|.+..+...++..+...|+|++|..+.+.+.+.
T Consensus 464 g~p~~A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~ 513 (822)
T PRK14574 464 DLPRKAEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISR 513 (822)
T ss_pred CCHHHHHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh
Confidence 99999999999999999999999999999999999999999999887654
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=8.8e-15 Score=156.18 Aligned_cols=225 Identities=9% Similarity=0.013 Sum_probs=131.2
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--CCHHhHHHHHHHH
Q 036003 224 TDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSG--KDTQAWSAMIVAY 301 (558)
Q Consensus 224 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~ 301 (558)
+...|..+..++.. ++.++|...+.+..... |+......+...+...|++++|...|+++.. ++...+..+..++
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~--Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~al 552 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ--PDAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTA 552 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC--CchHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHH
Confidence 34455555555544 56666666555555443 3333222334444566777777766665542 2333445555666
Q ss_pred HHCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHH
Q 036003 302 ATHGQGHKSILMFEEMMKAQVSPDE-ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDE 380 (558)
Q Consensus 302 ~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 380 (558)
.+.|++++|...+++..+.. |+. ..+..+.......|++++|...+++..+ ..|+...+..+...+.+.|++++
T Consensus 553 l~~Gd~~eA~~~l~qAL~l~--P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~---l~P~~~a~~~LA~~l~~lG~~de 627 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQRG--LGDNALYWWLHAQRYIPGQPELALNDLTRSLN---IAPSANAYVARATIYRQRHNVPA 627 (987)
T ss_pred HHCCCHHHHHHHHHHHHhcC--CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHH---hCCCHHHHHHHHHHHHHCCCHHH
Confidence 66667777777766666543 322 2222233333445667777766666653 23456666666666667777777
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 381 AYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 381 A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
|+..+++. ...| +...++.+..++...|++++|+..++++++..|.++..+..++.+|...|++++|...+++..+
T Consensus 628 A~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~ 705 (987)
T PRK09782 628 AVSDLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVID 705 (987)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 76666665 3333 3455566666666666777777777777666666666666677777777777776666666654
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.78 E-value=2.3e-14 Score=153.08 Aligned_cols=194 Identities=9% Similarity=0.025 Sum_probs=156.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHHhHHHH--HHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036003 259 YVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAM--IVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336 (558)
Q Consensus 259 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l--i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 336 (558)
+...|..+..++.. |+.++|...|.+.....+..++.+ ...+...|++++|...|+++... .|+...+..+...+
T Consensus 476 ~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~Pd~~~~L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~al 552 (987)
T PRK09782 476 DAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQPDAWQHRAVAYQAYQVEDYATALAAWQKISLH--DMSNEDLLAAANTA 552 (987)
T ss_pred CHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhCCchHHHHHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHH
Confidence 56777878888877 888899997777654333344444 44446899999999999998663 45555566777788
Q ss_pred HccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 036003 337 SHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKSTPILWRTLLSSCSSHNNLGLAKQ 415 (558)
Q Consensus 337 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~ 415 (558)
.+.|++++|...++...+. . +.+...+..+.....+.|++++|...+++. ...|+...+..+..++.+.|++++|+.
T Consensus 553 l~~Gd~~eA~~~l~qAL~l-~-P~~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l~P~~~a~~~LA~~l~~lG~~deA~~ 630 (987)
T PRK09782 553 QAAGNGAARDRWLQQAEQR-G-LGDNALYWWLHAQRYIPGQPELALNDLTRSLNIAPSANAYVARATIYRQRHNVPAAVS 630 (987)
T ss_pred HHCCCHHHHHHHHHHHHhc-C-CccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999999863 2 333344444444555669999999999987 567788889999999999999999999
Q ss_pred HHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhC
Q 036003 416 VIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
.++++++.+|+++..+..++.++...|++++|...+++..+.
T Consensus 631 ~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~l 672 (987)
T PRK09782 631 DLRAALELEPNNSNYQAALGYALWDSGDIAQSREMLERAHKG 672 (987)
T ss_pred HHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999988774
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.76 E-value=4.2e-14 Score=129.23 Aligned_cols=409 Identities=18% Similarity=0.209 Sum_probs=273.5
Q ss_pred CCCCCCCCCCCCCCCCCHHHHHHHHHhc--cCCchHHHHHHHHHHhCCCCChhHHHHHHH---HhhcCCC----------
Q 036003 4 TPSPPITQSPPPKLCTNTPNALSLLPRC--TSFRGLKQIHAVTIKTHLQNDLNVLTKLIN---FCTQNPT---------- 68 (558)
Q Consensus 4 ~ps~~~~~~~~~~~~p~~~~~~~ll~~~--~~~~~~~~~~~~~~~~g~~~~~~~~~~li~---~~~~~~~---------- 68 (558)
+|.-|.-.|+.....-...+-+.+++-- +...+.--+++.|.+.|.+.+..+--.|.. .|....+
T Consensus 99 QP~l~~F~P~~l~~~~~V~~E~nL~kmIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~ 178 (625)
T KOG4422|consen 99 QPQLPVFRPRHLADPLQVETENNLLKMISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVG 178 (625)
T ss_pred CccccccCchhcCCchhhcchhHHHHHHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhh
Confidence 4444444433332222334555555432 333444778899999999888877666655 3333311
Q ss_pred -------------CCCHHHHHHHHccCCCCCcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhc
Q 036003 69 -------------TSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACV 135 (558)
Q Consensus 69 -------------~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 135 (558)
.|++ |.-+|+.. .....+|..||.++++-...+.|.++|++......+.+..+||.+|.+..-.
T Consensus 179 ~~~~~E~S~~sWK~G~v--AdL~~E~~-PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~ 255 (625)
T KOG4422|consen 179 MRNFGEDSTSSWKSGAV--ADLLFETL-PKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYS 255 (625)
T ss_pred ccccccccccccccccH--HHHHHhhc-CCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhh
Confidence 1111 22223222 2466789999999999999999999999998888888999999999886544
Q ss_pred CcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHH----HHhccCC----CCcchHHHHHHHHHHCCCcc
Q 036003 136 GAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARR----IFENISE----PCVVSYNAIITAYARSSRPN 207 (558)
Q Consensus 136 ~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~----~~~~~~~----~~~~~~~~li~~~~~~g~~~ 207 (558)
...+++.+|....+.||..|+|+++.+..+.|+++.|.. ++.+|++ |...+|..+|..+.+.+++.
T Consensus 256 ------~~K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~ 329 (625)
T KOG4422|consen 256 ------VGKKLVAEMISQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQ 329 (625)
T ss_pred ------ccHHHHHHHHHhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCch
Confidence 338899999999999999999999999999998877654 4455543 88999999999999988876
Q ss_pred H-HHHHHHHHHHC----CC---CC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHhC----CCCc---hhHHHHHHHHHH
Q 036003 208 E-ALSLFRELQER----NL---KP-TDVTMLSALSSCALLGSLDLGKWIHEYIKKYG----LDKY---VKVNTALIDMHA 271 (558)
Q Consensus 208 ~-A~~~~~~m~~~----~~---~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~----~~~~---~~~~~~l~~~~~ 271 (558)
+ |..++.+.... .. .| |...|...+..|.+..+.+.|.++...+.... +.++ ...|..+..+.|
T Consensus 330 k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~lic 409 (625)
T KOG4422|consen 330 KVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLIC 409 (625)
T ss_pred hhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHH
Confidence 5 44444444332 22 23 45678888999999999999998877665321 2333 345667788888
Q ss_pred hcCCHHHHHHHHhccCCC----CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-Ch----
Q 036003 272 KCGRLDDAVSVFDNMSGK----DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTG-LV---- 342 (558)
Q Consensus 272 ~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-~~---- 342 (558)
.....+.-..+|+.|... +..+...++++..-.|+++-.-++|.+++..|-.-+.....-++..+++.. ..
T Consensus 410 q~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~ 489 (625)
T KOG4422|consen 410 QMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPE 489 (625)
T ss_pred HHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChH
Confidence 888889999999988753 667777888888888888888888888888764444433333333333332 10
Q ss_pred ----HH-----HHHHH-------HHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCCHHHHHH
Q 036003 343 ----DE-----GWNYF-------YSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-------PIKSTPILWRT 399 (558)
Q Consensus 343 ----~~-----a~~~~-------~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~~~~~~~~~ 399 (558)
.. |..++ .+++ .........+.+...+.+.|+.++|.++|.-+ +..|.....--
T Consensus 490 r~Ql~~~~ak~aad~~e~~e~~~~R~r---~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~E 566 (625)
T KOG4422|consen 490 REQLQVAFAKCAADIKEAYESQPIRQR---AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAE 566 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhHHHHH---hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHH
Confidence 00 11111 1111 22334456667777778888888888777655 22333333345
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHccC
Q 036003 400 LLSSCSSHNNLGLAKQVIERIFELD 424 (558)
Q Consensus 400 l~~~~~~~g~~~~a~~~~~~~~~~~ 424 (558)
++....+.++...|..+++-+...+
T Consensus 567 l~d~a~~~~spsqA~~~lQ~a~~~n 591 (625)
T KOG4422|consen 567 LMDSAKVSNSPSQAIEVLQLASAFN 591 (625)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcC
Confidence 5566666777777777777776554
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.71 E-value=4.8e-13 Score=140.12 Aligned_cols=387 Identities=10% Similarity=0.023 Sum_probs=283.3
Q ss_pred CCchHHHHHHHHHHhCCCC-ChhHHHHH--HHHhhcCCCCCCHHHHHHHHccCCC--C-CcccHHHHHHHHhcCCCchHH
Q 036003 33 SFRGLKQIHAVTIKTHLQN-DLNVLTKL--INFCTQNPTTSSMEHAHLLFDRIPE--P-DIVLFNTMARGYSRSKTPIRA 106 (558)
Q Consensus 33 ~~~~~~~~~~~~~~~g~~~-~~~~~~~l--i~~~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A 106 (558)
..+...+......+.- .| +...+..+ ...|... |++++|.++|+++.+ | +...+..++..+...++.++|
T Consensus 80 ~~G~~~~A~~~~eka~-~p~n~~~~~llalA~ly~~~---gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eA 155 (822)
T PRK14574 80 WAGRDQEVIDVYERYQ-SSMNISSRGLASAARAYRNE---KRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVV 155 (822)
T ss_pred HcCCcHHHHHHHHHhc-cCCCCCHHHHHHHHHHHHHc---CCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHH
Confidence 3344433333333333 33 33333333 5688888 999999999999876 3 456677788899999999999
Q ss_pred HHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccC
Q 036003 107 IFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENIS 186 (558)
Q Consensus 107 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 186 (558)
++.++++... .|+...+..++..+... ++..+|++.++++.+.. +.+...+..+...+.+.|-...|.++..+-+
T Consensus 156 l~~l~~l~~~--dp~~~~~l~layL~~~~--~~~~~AL~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p 230 (822)
T PRK14574 156 LKQATELAER--DPTVQNYMTLSYLNRAT--DRNYDALQASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENP 230 (822)
T ss_pred HHHHHHhccc--CcchHHHHHHHHHHHhc--chHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCc
Confidence 9999999875 56656664443333333 66666999999999985 5578888889999999999999999988765
Q ss_pred C-CCcchHH----HHHHHHHH---------CCC---ccHHHHHHHHHHHC-CCCCC-HHH----HHHHHHHHhccCChHH
Q 036003 187 E-PCVVSYN----AIITAYAR---------SSR---PNEALSLFRELQER-NLKPT-DVT----MLSALSSCALLGSLDL 243 (558)
Q Consensus 187 ~-~~~~~~~----~li~~~~~---------~g~---~~~A~~~~~~m~~~-~~~p~-~~~----~~~ll~~~~~~~~~~~ 243 (558)
. -+...+. ..+.-.++ ..+ .+.|+.-++.+... +-.|. ... ..-.+.++...|+..+
T Consensus 231 ~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~ 310 (822)
T PRK14574 231 NLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTAD 310 (822)
T ss_pred cccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHH
Confidence 3 1111100 01111111 122 23455555555542 22232 222 2234567888999999
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC---------CHHhHHHHHHHHHHCCChHHHHHHH
Q 036003 244 GKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK---------DTQAWSAMIVAYATHGQGHKSILMF 314 (558)
Q Consensus 244 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~~~~~~a~~~~ 314 (558)
+.+.++.+...+.+....+-..+.++|...++.++|+.+|+.+... +......|.-+|...+++++|..++
T Consensus 311 vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l 390 (822)
T PRK14574 311 LIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFA 390 (822)
T ss_pred HHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHH
Confidence 9999999999887766678888999999999999999999987532 2333577889999999999999999
Q ss_pred HHHHHCCC-----------CCCH---HHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHH
Q 036003 315 EEMMKAQV-----------SPDE---ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDE 380 (558)
Q Consensus 315 ~~m~~~g~-----------~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 380 (558)
+++.+.-. .||. ..+..++..+...|++.+|++.++++.. .-+-|......+.+.+...|.+.+
T Consensus 391 ~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~--~aP~n~~l~~~~A~v~~~Rg~p~~ 468 (822)
T PRK14574 391 VNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS--TAPANQNLRIALASIYLARDLPRK 468 (822)
T ss_pred HHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCCHHH
Confidence 99987311 2332 3344566778899999999999999986 566788999999999999999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCccc
Q 036003 381 AYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGD 430 (558)
Q Consensus 381 A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 430 (558)
|++.++.. ...| +..+....+.++...+++++|..+.+.+.+..|.++.+
T Consensus 469 A~~~~k~a~~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~ 520 (822)
T PRK14574 469 AEQELKAVESLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPS 520 (822)
T ss_pred HHHHHHHHhhhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhH
Confidence 99999876 4455 45677788888999999999999999999999998744
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.7e-13 Score=126.16 Aligned_cols=202 Identities=12% Similarity=0.120 Sum_probs=163.0
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHHhHHHHHHHHHHCCChHHHHHHH
Q 036003 238 LGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS---GKDTQAWSAMIVAYATHGQGHKSILMF 314 (558)
Q Consensus 238 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~ 314 (558)
.|++++|...+++.....-.-....|| +.-.+-..|++++|++.|-++. ..++...-.+...|-...+..+|++++
T Consensus 503 ngd~dka~~~ykeal~ndasc~ealfn-iglt~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~ 581 (840)
T KOG2003|consen 503 NGDLDKAAEFYKEALNNDASCTEALFN-IGLTAEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELL 581 (840)
T ss_pred cCcHHHHHHHHHHHHcCchHHHHHHHH-hcccHHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHH
Confidence 478888888888887665444444454 4445677888999988887764 346777777888888888999999988
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC
Q 036003 315 EEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKST 393 (558)
Q Consensus 315 ~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~ 393 (558)
.+.... ++.|...++.|...|-+.|+-.+|.+++-.-.. -++-+..+..-|..-|....-+++|+.+|++. -+.|+
T Consensus 582 ~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~ 658 (840)
T KOG2003|consen 582 MQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPN 658 (840)
T ss_pred HHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCcc
Confidence 777653 444678888999999999999999988766543 45668888888999999999999999999998 67899
Q ss_pred HHHHHHHHHHH-HhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCC
Q 036003 394 PILWRTLLSSC-SSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGR 443 (558)
Q Consensus 394 ~~~~~~l~~~~-~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 443 (558)
..-|..++..| .+.|++.+|..+++.....-|.+...+..|++.+...|.
T Consensus 659 ~~kwqlmiasc~rrsgnyqka~d~yk~~hrkfpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 659 QSKWQLMIASCFRRSGNYQKAFDLYKDIHRKFPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCccchHHHHHHHHHhccccc
Confidence 99999888665 568999999999999999999999999999999888774
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.67 E-value=1.8e-13 Score=137.41 Aligned_cols=397 Identities=14% Similarity=0.116 Sum_probs=268.6
Q ss_pred CCChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCCC------CcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcc
Q 036003 50 QNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEP------DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDY 123 (558)
Q Consensus 50 ~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 123 (558)
.-++.+.+.|.+.|--. |+++.++.+...+... -..+|..+.++|-..|++++|...|.+..+. .||.+
T Consensus 267 ~~nP~~l~~LAn~fyfK---~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~--~~d~~ 341 (1018)
T KOG2002|consen 267 NENPVALNHLANHFYFK---KDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA--DNDNF 341 (1018)
T ss_pred CCCcHHHHHHHHHHhhc---ccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc--CCCCc
Confidence 45678889999988777 9999999988877542 2345788889999999999999999777654 45544
Q ss_pred cHH--HHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCC----ChHHHHHHHhccCC---CCcchHH
Q 036003 124 SFP--SLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECS----DVEAARRIFENISE---PCVVSYN 194 (558)
Q Consensus 124 ~~~--~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g----~~~~A~~~~~~~~~---~~~~~~~ 194 (558)
++. -+...+... |+++.+...|+.+.+.. +.+..+...|...|...+ ..+.|..++.+..+ .|...|-
T Consensus 342 ~l~~~GlgQm~i~~--~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l 418 (1018)
T KOG2002|consen 342 VLPLVGLGQMYIKR--GDLEESKFCFEKVLKQL-PNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVDSEAWL 418 (1018)
T ss_pred cccccchhHHHHHh--chHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcccccHHHHH
Confidence 443 455566777 99999999999998864 556777778888887775 45677777766665 3455566
Q ss_pred HHHHHHHHCCCccHHHHHHHHH----HHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh---CCCCch-------
Q 036003 195 AIITAYARSSRPNEALSLFREL----QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY---GLDKYV------- 260 (558)
Q Consensus 195 ~li~~~~~~g~~~~A~~~~~~m----~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~------- 260 (558)
.+...+-... +..++.+|... ...+-.+.....|.+.......|+++.|...|...... ...++.
T Consensus 419 ~laql~e~~d-~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt 497 (1018)
T KOG2002|consen 419 ELAQLLEQTD-PWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLT 497 (1018)
T ss_pred HHHHHHHhcC-hHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhH
Confidence 5555555443 33335555433 34444566677777777777777777777777776654 112222
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhccCC-------------------------------------CCHHhHHHHHHHHHH
Q 036003 261 KVNTALIDMHAKCGRLDDAVSVFDNMSG-------------------------------------KDTQAWSAMIVAYAT 303 (558)
Q Consensus 261 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-------------------------------------~~~~~~~~li~~~~~ 303 (558)
.-|| +..++-..++.+.|.+.|..+.+ .++..|+.+...|..
T Consensus 498 ~~YN-larl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~ 576 (1018)
T KOG2002|consen 498 LKYN-LARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLK 576 (1018)
T ss_pred HHHH-HHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHh
Confidence 1233 34444444455555555554432 244455555555555
Q ss_pred CCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHc------------cCChHHHHHHHHHchhhcCCCCChhHHHHHHH
Q 036003 304 HGQGHKSILMFEEMMKAQ-VSPDEITFLGLLYACSH------------TGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVD 370 (558)
Q Consensus 304 ~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 370 (558)
...+..|.+-|+...+.- ..+|..+...|.+.|.+ .+..++|+++|.++.. .-+.|...-+-+.-
T Consensus 577 k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~--~dpkN~yAANGIgi 654 (1018)
T KOG2002|consen 577 KSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLR--NDPKNMYAANGIGI 654 (1018)
T ss_pred hhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHh--cCcchhhhccchhh
Confidence 555555555554444321 22455555555554432 2346778888888875 45567777788888
Q ss_pred HHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccC--CCCcccHHhHHHHHHhcCChHH
Q 036003 371 LLGRAGRLDEAYRFIDELP--IKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD--DSHGGDYVILSNLCARAGRWED 446 (558)
Q Consensus 371 ~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~ 446 (558)
.++..|++.+|..+|.+.. ......+|-.+.++|...|++..|++.|+..++.. .+++.....|+.++.+.|++.+
T Consensus 655 VLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~e 734 (1018)
T KOG2002|consen 655 VLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQE 734 (1018)
T ss_pred hhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHH
Confidence 8899999999999998872 22345688889999999999999999999987754 4556778889999999999999
Q ss_pred HHHHHHHHHhCC
Q 036003 447 VDYLRKLMKDRG 458 (558)
Q Consensus 447 A~~~~~~m~~~g 458 (558)
|.+.+.......
T Consensus 735 ak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 735 AKEALLKARHLA 746 (1018)
T ss_pred HHHHHHHHHHhC
Confidence 988887766543
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.64 E-value=1e-11 Score=113.93 Aligned_cols=397 Identities=12% Similarity=0.103 Sum_probs=275.2
Q ss_pred hhHHHHHHHHhhcCCCCCCHHHHHHHHccCCCCCccc----HHH---HHHHHhcCCCchHHHHHHHHhHHCC--------
Q 036003 53 LNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVL----FNT---MARGYSRSKTPIRAIFLFVELLNSG-------- 117 (558)
Q Consensus 53 ~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~---li~~~~~~g~~~~A~~~~~~m~~~g-------- 117 (558)
+.+-|.|+.+-.. |.+.++.-+++.|.+.++.. --. |+..|-.+.-+-.-++.|-.|.+.|
T Consensus 116 V~~E~nL~kmIS~----~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK 191 (625)
T KOG4422|consen 116 VETENNLLKMISS----REVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWK 191 (625)
T ss_pred hcchhHHHHHHhh----cccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccc
Confidence 4577888887665 78999999999997633221 111 2222211221212223333332221
Q ss_pred -----------CCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccC
Q 036003 118 -----------LLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENIS 186 (558)
Q Consensus 118 -----------~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 186 (558)
.+-...||.++|.++++. -..+.|.+++++......+.+..++|.+|.+-.-..+ .+++.+|.
T Consensus 192 ~G~vAdL~~E~~PKT~et~s~mI~Gl~K~--~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMi 265 (625)
T KOG4422|consen 192 SGAVADLLFETLPKTDETVSIMIAGLCKF--SSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMI 265 (625)
T ss_pred cccHHHHHHhhcCCCchhHHHHHHHHHHH--HhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHH
Confidence 223668999999999999 8999999999999888779999999999976544333 55566665
Q ss_pred ----CCCcchHHHHHHHHHHCCCccH----HHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHH-HHHHHHHHHHh---
Q 036003 187 ----EPCVVSYNAIITAYARSSRPNE----ALSLFRELQERNLKPTDVTMLSALSSCALLGSLDL-GKWIHEYIKKY--- 254 (558)
Q Consensus 187 ----~~~~~~~~~li~~~~~~g~~~~----A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~-a~~~~~~~~~~--- 254 (558)
.||..|+|+++.+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++..+ +..++..+...
T Consensus 266 sqkm~Pnl~TfNalL~c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltG 345 (625)
T KOG4422|consen 266 SQKMTPNLFTFNALLSCAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTG 345 (625)
T ss_pred HhhcCCchHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhcc
Confidence 3999999999999999998875 56788899999999999999999999999888755 44444444432
Q ss_pred -CC----CCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-----------CHHhHHHHHHHHHHCCChHHHHHHHHHHH
Q 036003 255 -GL----DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK-----------DTQAWSAMIVAYATHGQGHKSILMFEEMM 318 (558)
Q Consensus 255 -~~----~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 318 (558)
.+ +.+...|..-+..|.+..+.+-|.++-.-+... ...-|..+....|+....+.-+.+|+.|.
T Consensus 346 K~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lV 425 (625)
T KOG4422|consen 346 KTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLV 425 (625)
T ss_pred CcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 22 234556667778888888988888877665532 12235667788888889999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcC-C--------HHH-----HHHH
Q 036003 319 KAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAG-R--------LDE-----AYRF 384 (558)
Q Consensus 319 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~--------~~~-----A~~~ 384 (558)
-.-+-|+..+...++++....|.++-.-++|..+.. +|...+......+...+++.. + +.. |..+
T Consensus 426 P~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~-~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~ 504 (625)
T KOG4422|consen 426 PSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKE-YGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADI 504 (625)
T ss_pred cceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHH-hhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHH
Confidence 887889999999999999999999988888888876 354444444444444444433 1 111 1112
Q ss_pred HHh-------C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccC---CCCcc--cHHhHHHHHHhcCChHHHHHHH
Q 036003 385 IDE-------L-PIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD---DSHGG--DYVILSNLCARAGRWEDVDYLR 451 (558)
Q Consensus 385 ~~~-------~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~--~~~~l~~~~~~~g~~~~A~~~~ 451 (558)
++. + ..+-.....+.+...+.+.|..++|-++|....+.+ |..+. +..-+.+.-.+.+....|...+
T Consensus 505 ~e~~e~~~~R~r~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~l 584 (625)
T KOG4422|consen 505 KEAYESQPIRQRAQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVL 584 (625)
T ss_pred HHHHHhhHHHHHhccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHH
Confidence 211 1 122344566777777889999999999999997654 33322 2234555556667788899999
Q ss_pred HHHHhCCCc
Q 036003 452 KLMKDRGVL 460 (558)
Q Consensus 452 ~~m~~~g~~ 460 (558)
+-|...+..
T Consensus 585 Q~a~~~n~~ 593 (625)
T KOG4422|consen 585 QLASAFNLP 593 (625)
T ss_pred HHHHHcCch
Confidence 988776554
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.6e-13 Score=132.31 Aligned_cols=406 Identities=12% Similarity=0.079 Sum_probs=248.4
Q ss_pred HHHHHHHHhccCCchHHHHHHHHHH---hCC--CCChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCC--CC--cccHHH
Q 036003 22 PNALSLLPRCTSFRGLKQIHAVTIK---THL--QNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE--PD--IVLFNT 92 (558)
Q Consensus 22 ~~~~~ll~~~~~~~~~~~~~~~~~~---~g~--~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~--~~--~~~~~~ 92 (558)
+..+.|-..+.--++-..+++.+.. .-. ..-...|-.+..+|-.. |++++|.+.|-.... +| +..+--
T Consensus 271 ~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~---Gd~ekA~~yY~~s~k~~~d~~~l~~~G 347 (1018)
T KOG2002|consen 271 VALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQ---GDFEKAFKYYMESLKADNDNFVLPLVG 347 (1018)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhh---ccHHHHHHHHHHHHccCCCCccccccc
Confidence 3444444444444444444443322 111 11123466677788888 999999988876654 33 334555
Q ss_pred HHHHHhcCCCchHHHHHHHHhHHCCCCCC-cccHHHHHHHHHhcC--cccHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 036003 93 MARGYSRSKTPIRAIFLFVELLNSGLLPD-DYSFPSLLKACACVG--AEALEEGKQLHCFAIKLGLNSNLYVCTTLINLY 169 (558)
Q Consensus 93 li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~--~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~ 169 (558)
+.+.+.+.|+.+.+...|+...+. .|| ..+...|-..|+..+ ....+.|..++....+.. +.|...|-.+..+|
T Consensus 348 lgQm~i~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~ 424 (1018)
T KOG2002|consen 348 LGQMYIKRGDLEESKFCFEKVLKQ--LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLL 424 (1018)
T ss_pred hhHHHHHhchHHHHHHHHHHHHHh--CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHH
Confidence 778888889999988888888774 343 334444444444330 013455555555554432 33444554444444
Q ss_pred HhCCChHHHHHHHhccC--------CCCcchHHHHHHHHHHCCCccHHHHHHHHHHHC---CCC----------------
Q 036003 170 AECSDVEAARRIFENIS--------EPCVVSYNAIITAYARSSRPNEALSLFRELQER---NLK---------------- 222 (558)
Q Consensus 170 ~~~g~~~~A~~~~~~~~--------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~---~~~---------------- 222 (558)
-...-+.. +..|.... ..-....|.+...+...|++.+|...|...... ...
T Consensus 425 e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNla 503 (1018)
T KOG2002|consen 425 EQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLA 503 (1018)
T ss_pred HhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHH
Confidence 33322211 22222211 133344555555555555555555555544332 111
Q ss_pred -----------------------CCH-HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 036003 223 -----------------------PTD-VTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDD 278 (558)
Q Consensus 223 -----------------------p~~-~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 278 (558)
|.- ..|..++......+...+|...+..+.... ..++..++.+.+.|.+...+..
T Consensus 504 rl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~ 582 (1018)
T KOG2002|consen 504 RLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKP 582 (1018)
T ss_pred HHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcc
Confidence 211 122222211122344555555555554432 3444555556667777777777
Q ss_pred HHHHHhccCC-----CCHHhHHHHHHHHHH------------CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 036003 279 AVSVFDNMSG-----KDTQAWSAMIVAYAT------------HGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGL 341 (558)
Q Consensus 279 A~~~~~~~~~-----~~~~~~~~li~~~~~------------~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 341 (558)
|.+-|+.+.+ +|..+.-+|...|.+ .+..++|+++|.+..+.. +-|...-+.+.-.++..|+
T Consensus 583 a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~ 661 (1018)
T KOG2002|consen 583 AKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGR 661 (1018)
T ss_pred cccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccC
Confidence 7775554432 255555556665543 345788999999988853 3367788888888999999
Q ss_pred hHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 036003 342 VDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL----PIKSTPILWRTLLSSCSSHNNLGLAKQVI 417 (558)
Q Consensus 342 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 417 (558)
+..|..+|..+++. ......+|-.+..+|..+|++..|++.|+.. ..+.+..+...|..++.+.|++.+|.+.+
T Consensus 662 ~~~A~dIFsqVrEa--~~~~~dv~lNlah~~~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~l 739 (1018)
T KOG2002|consen 662 FSEARDIFSQVREA--TSDFEDVWLNLAHCYVEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEAL 739 (1018)
T ss_pred chHHHHHHHHHHHH--HhhCCceeeeHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 99999999999984 3345668889999999999999999999876 33457888999999999999999999999
Q ss_pred HHHHccCCCCcccHHhHHHHH
Q 036003 418 ERIFELDDSHGGDYVILSNLC 438 (558)
Q Consensus 418 ~~~~~~~~~~~~~~~~l~~~~ 438 (558)
..+....|.++..-..++.+.
T Consensus 740 l~a~~~~p~~~~v~FN~a~v~ 760 (1018)
T KOG2002|consen 740 LKARHLAPSNTSVKFNLALVL 760 (1018)
T ss_pred HHHHHhCCccchHHhHHHHHH
Confidence 999999999877655554443
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.63 E-value=9.9e-16 Score=144.00 Aligned_cols=256 Identities=15% Similarity=0.140 Sum_probs=111.2
Q ss_pred HHHHHHHCCCccHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 036003 196 IITAYARSSRPNEALSLFRELQERNLKPTDVT-MLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCG 274 (558)
Q Consensus 196 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 274 (558)
+...+.+.|++++|++++.+......+|+... +..+...+...++.+.|...++++...+.. +...+..++.. ...+
T Consensus 14 ~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~ 91 (280)
T PF13429_consen 14 LARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDG 91 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-cccc
Confidence 45566677777777777755443322343333 333444555677777888877777765432 45555666666 6778
Q ss_pred CHHHHHHHHhccCC--CCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 036003 275 RLDDAVSVFDNMSG--KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ-VSPDEITFLGLLYACSHTGLVDEGWNYFYS 351 (558)
Q Consensus 275 ~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 351 (558)
++++|.+++...-+ ++...+..++..+.+.++++++..+++++.... ...+...|..+...+.+.|+.++|.+.+++
T Consensus 92 ~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~ 171 (280)
T PF13429_consen 92 DPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRK 171 (280)
T ss_dssp --------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred cccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888888776543 356667788888889999999999999877543 345667788888889999999999999999
Q ss_pred chhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcc
Q 036003 352 MRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL--PIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGG 429 (558)
Q Consensus 352 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 429 (558)
..+. .+.|......++..+...|+.+++.+++... ....|+..|..+..++...|+.++|...|++..+..|.++.
T Consensus 172 al~~--~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~ 249 (280)
T PF13429_consen 172 ALEL--DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPL 249 (280)
T ss_dssp HHHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HH
T ss_pred HHHc--CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhccccccccccccccccccccccccc
Confidence 9863 3335778889999999999999988888776 11345567888999999999999999999999999999999
Q ss_pred cHHhHHHHHHhcCChHHHHHHHHHHH
Q 036003 430 DYVILSNLCARAGRWEDVDYLRKLMK 455 (558)
Q Consensus 430 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 455 (558)
....+++++...|+.++|.++.++..
T Consensus 250 ~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 250 WLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHT----------------
T ss_pred cccccccccccccccccccccccccc
Confidence 99999999999999999999987654
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.61 E-value=1.8e-12 Score=129.53 Aligned_cols=314 Identities=13% Similarity=0.109 Sum_probs=240.2
Q ss_pred ccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccC---CCCcchHHHHHHHHHHCCCccHHHHHHH
Q 036003 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENIS---EPCVVSYNAIITAYARSSRPNEALSLFR 214 (558)
Q Consensus 138 ~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~~ 214 (558)
|+.++|.+++.++++.. +-+...|-.|...|-..|+.+++...+-... ..|..-|..+.....+.|+++.|.-.|.
T Consensus 153 g~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~ 231 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYS 231 (895)
T ss_pred CCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHH
Confidence 88999999999888875 5577788888899999999888877765443 3566778888888888899999999998
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHH----HHHHHHHhcCCHHHHHHHHhccCCC-
Q 036003 215 ELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNT----ALIDMHAKCGRLDDAVSVFDNMSGK- 289 (558)
Q Consensus 215 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~- 289 (558)
+.++.. +++...+---...|-+.|+...|...|.++.....+.+..-+. ..+..+...++-+.|.+.++.....
T Consensus 232 rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~ 310 (895)
T KOG2076|consen 232 RAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKE 310 (895)
T ss_pred HHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhc
Confidence 888764 4555555566777888899999988888888775433333222 2455666777778888887776542
Q ss_pred ----CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCC---------------------------CCHHHHHHHHHHHHc
Q 036003 290 ----DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVS---------------------------PDEITFLGLLYACSH 338 (558)
Q Consensus 290 ----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~---------------------------p~~~~~~~ll~~~~~ 338 (558)
+...++.++..|.+...++.|.....++...... ++... -.+.-++.+
T Consensus 311 ~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~ 389 (895)
T KOG2076|consen 311 KDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVH 389 (895)
T ss_pred cccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhhc
Confidence 4556788888888888888888888777662222 22222 123334455
Q ss_pred cCChHHHHHHHHHchhhcCC--CCChhHHHHHHHHHhhcCCHHHHHHHHHhCC---CCCCHHHHHHHHHHHHhcCCHHHH
Q 036003 339 TGLVDEGWNYFYSMRDKYGI--VPGIKHYGCMVDLLGRAGRLDEAYRFIDELP---IKSTPILWRTLLSSCSSHNNLGLA 413 (558)
Q Consensus 339 ~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~a 413 (558)
....+....+....... .. .-+...|.-+.++|...|++.+|+.+|..+. ...+...|.-+..+|...|.+++|
T Consensus 390 L~~~e~~e~ll~~l~~~-n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 390 LKERELLEALLHFLVED-NVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred ccccchHHHHHHHHHHh-cCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence 55555555555555554 53 3457889999999999999999999999982 223567999999999999999999
Q ss_pred HHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHH
Q 036003 414 KQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMK 455 (558)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 455 (558)
.+.+++++...|.+..+-.+|...|.+.|+.++|.+.+..+.
T Consensus 469 ~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 469 IEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred HHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 999999999999999999999999999999999999999876
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.61 E-value=4.4e-12 Score=124.81 Aligned_cols=245 Identities=12% Similarity=-0.034 Sum_probs=103.6
Q ss_pred HhCCChHHHHHHHhccCC--CCcchHH--HHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHH
Q 036003 170 AECSDVEAARRIFENISE--PCVVSYN--AIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGK 245 (558)
Q Consensus 170 ~~~g~~~~A~~~~~~~~~--~~~~~~~--~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 245 (558)
.+.|+++.|...|.++.+ |+...+. .....+...|++++|.+.++++.+.. +-+...+..+...|.+.|++++|.
T Consensus 129 ~~~g~~~~A~~~l~~A~~~~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~ 207 (398)
T PRK10747 129 QQRGDEARANQHLERAAELADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLL 207 (398)
T ss_pred HHCCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHH
Confidence 445555555555555443 2221111 12334445555555555555554432 223334444445555555555555
Q ss_pred HHHHHHHHhCCCCch-------hHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHHhHHHHHHHHHHCCChHHHHHHHH
Q 036003 246 WIHEYIKKYGLDKYV-------KVNTALIDMHAKCGRLDDAVSVFDNMSG---KDTQAWSAMIVAYATHGQGHKSILMFE 315 (558)
Q Consensus 246 ~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~ 315 (558)
.++..+.+.+..++. ..|..++.......+.+...++++.+.+ .++.....+..++...|+.++|.++++
T Consensus 208 ~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~ 287 (398)
T PRK10747 208 DILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIIL 287 (398)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 555555544322111 1111122222222233333344443321 234444444445555555555555554
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH
Q 036003 316 EMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKSTP 394 (558)
Q Consensus 316 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~ 394 (558)
+..+. .|+... .++.+....++.+++.+..+...+ ..+-|...+.++...+.+.|++++|.+.|+.. ...|+.
T Consensus 288 ~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~~lk--~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~ 361 (398)
T PRK10747 288 DGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQQIK--QHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDA 361 (398)
T ss_pred HHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCH
Confidence 44442 222211 111222233444445444444443 22233334444444444555555555555444 334444
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036003 395 ILWRTLLSSCSSHNNLGLAKQVIERIF 421 (558)
Q Consensus 395 ~~~~~l~~~~~~~g~~~~a~~~~~~~~ 421 (558)
..+..+...+.+.|+.++|.+++++.+
T Consensus 362 ~~~~~La~~~~~~g~~~~A~~~~~~~l 388 (398)
T PRK10747 362 YDYAWLADALDRLHKPEEAAAMRRDGL 388 (398)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444444444444555555544444443
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.59 E-value=1.3e-10 Score=112.18 Aligned_cols=369 Identities=12% Similarity=0.050 Sum_probs=273.9
Q ss_pred ccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHH
Q 036003 88 VLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLIN 167 (558)
Q Consensus 88 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~ 167 (558)
.+|+.-...|.+.+.++-|..+|...++. ..-+...|..+...--.. |..+....+|++++..- +-....|-....
T Consensus 517 ~tw~~da~~~~k~~~~~carAVya~alqv-fp~k~slWlra~~~ek~h--gt~Esl~Allqkav~~~-pkae~lwlM~ak 592 (913)
T KOG0495|consen 517 STWLDDAQSCEKRPAIECARAVYAHALQV-FPCKKSLWLRAAMFEKSH--GTRESLEALLQKAVEQC-PKAEILWLMYAK 592 (913)
T ss_pred hHHhhhHHHHHhcchHHHHHHHHHHHHhh-ccchhHHHHHHHHHHHhc--CcHHHHHHHHHHHHHhC-CcchhHHHHHHH
Confidence 45666666777777777777777777663 222344454444433333 77888888888887752 444555666666
Q ss_pred HHHhCCChHHHHHHHhccCC---CCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHH
Q 036003 168 LYAECSDVEAARRIFENISE---PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLG 244 (558)
Q Consensus 168 ~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 244 (558)
.+...||+..|..++...-+ .+...|-+-+.....+.+++.|..+|.+.... .|+...|.--++.---.++.++|
T Consensus 593 e~w~agdv~~ar~il~~af~~~pnseeiwlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~er~ld~~eeA 670 (913)
T KOG0495|consen 593 EKWKAGDVPAARVILDQAFEANPNSEEIWLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANLERYLDNVEEA 670 (913)
T ss_pred HHHhcCCcHHHHHHHHHHHHhCCCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHHHHHhhhHHHH
Confidence 77777888888888877654 34556777777778888888888888877653 56666666555555667788888
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC---CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCC
Q 036003 245 KWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK---DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321 (558)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 321 (558)
.+++++..+. ++.-...|-.+...+-+.++++.|.+.|..-.+. .+..|-.+...=-+.|..-+|..++++..-.+
T Consensus 671 ~rllEe~lk~-fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN 749 (913)
T KOG0495|consen 671 LRLLEEALKS-FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN 749 (913)
T ss_pred HHHHHHHHHh-CCchHHHHHHHhHHHHHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC
Confidence 8888877775 3444667777888888888888888888765543 45567777777777788888888888887764
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHH
Q 036003 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLL 401 (558)
Q Consensus 322 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~ 401 (558)
. -+...|...|+.-.+.|+.+.|..+..+..+ .++.+...|..-|.+..+.++-.+..+.+++.. .|+.+.-++.
T Consensus 750 P-k~~~lwle~Ir~ElR~gn~~~a~~lmakALQ--ecp~sg~LWaEaI~le~~~~rkTks~DALkkce--~dphVllaia 824 (913)
T KOG0495|consen 750 P-KNALLWLESIRMELRAGNKEQAELLMAKALQ--ECPSSGLLWAEAIWLEPRPQRKTKSIDALKKCE--HDPHVLLAIA 824 (913)
T ss_pred C-CcchhHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCccchhHHHHHHhccCcccchHHHHHHHhcc--CCchhHHHHH
Confidence 3 3667888888888889999999888888886 667777888888888888888777777777764 4566667777
Q ss_pred HHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhCCCccCCcccEEEE
Q 036003 402 SSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEV 470 (558)
Q Consensus 402 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~ 470 (558)
..+....+++.|...|.+++..+|++..+|.-+...+.+.|.-++-.+++.+... ..|.-|-.|..+
T Consensus 825 ~lfw~e~k~~kar~Wf~Ravk~d~d~GD~wa~fykfel~hG~eed~kev~~~c~~--~EP~hG~~W~av 891 (913)
T KOG0495|consen 825 KLFWSEKKIEKAREWFERAVKKDPDNGDAWAWFYKFELRHGTEEDQKEVLKKCET--AEPTHGELWQAV 891 (913)
T ss_pred HHHHHHHHHHHHHHHHHHHHccCCccchHHHHHHHHHHHhCCHHHHHHHHHHHhc--cCCCCCcHHHHH
Confidence 8888899999999999999999999999999999999999999888899888765 345555555543
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.5e-11 Score=121.71 Aligned_cols=289 Identities=10% Similarity=-0.041 Sum_probs=163.1
Q ss_pred HHHHHHhcCcccHHHHHHHHHHHHHhCCCChH-HHHHHHHHHHHhCCChHHHHHHHhccCC--CCcc--hHHHHHHHHHH
Q 036003 128 LLKACACVGAEALEEGKQLHCFAIKLGLNSNL-YVCTTLINLYAECSDVEAARRIFENISE--PCVV--SYNAIITAYAR 202 (558)
Q Consensus 128 ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~~~--~~~~li~~~~~ 202 (558)
+..+......|+++.|.+.+....+.. |+. ..+-....++.+.|+.+.|.+.|++..+ |+.. ..-+....+.+
T Consensus 88 ~~~glla~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~ 165 (409)
T TIGR00540 88 TEEALLKLAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLA 165 (409)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHH
Confidence 344443333477888887777665543 332 2233445666777888888777777543 3332 23334666777
Q ss_pred CCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH---H----hcCC
Q 036003 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMH---A----KCGR 275 (558)
Q Consensus 203 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~---~----~~g~ 275 (558)
.|+++.|.+.++.+.+.. +-+...+..+...+.+.|++++|.+++..+.+.+..........-..++ . ....
T Consensus 166 ~~~~~~Al~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~~~~~ 244 (409)
T TIGR00540 166 QNELHAARHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAMADEG 244 (409)
T ss_pred CCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 788888888888777763 3355566677777778888888888888777775433222211111111 1 1122
Q ss_pred HHHHHHHHhccCC---CCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHH--H-HHHHHHHHccCChHHHHHHH
Q 036003 276 LDDAVSVFDNMSG---KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEIT--F-LGLLYACSHTGLVDEGWNYF 349 (558)
Q Consensus 276 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~-~~ll~~~~~~g~~~~a~~~~ 349 (558)
.+...+.++...+ .+...+..+...+...|+.++|.+++++..+. .||... + ..........++.+.+.+.+
T Consensus 245 ~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~ 322 (409)
T TIGR00540 245 IDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--LGDDRAISLPLCLPIPRLKPEDNEKLEKLI 322 (409)
T ss_pred HHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh--CCCcccchhHHHHHhhhcCCCChHHHHHHH
Confidence 2333444444432 26666667777777777777777777777764 233321 1 11111122345566666666
Q ss_pred HHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHh--C-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036003 350 YSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDE--L-PIKSTPILWRTLLSSCSSHNNLGLAKQVIERIF 421 (558)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~--~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 421 (558)
+...+...-.|+.....++...+.+.|++++|.+.|+. . ...|+...+..+...+.+.|+.++|.+++++.+
T Consensus 323 e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~l 397 (409)
T TIGR00540 323 EKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDSL 397 (409)
T ss_pred HHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66554211112114455666666666666666666662 2 445666666666666666666666666666654
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.57 E-value=1.1e-11 Score=115.67 Aligned_cols=214 Identities=14% Similarity=0.147 Sum_probs=175.6
Q ss_pred hccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHHhHHHHHHHHHHCCChHHHHH
Q 036003 236 ALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSG---KDTQAWSAMIVAYATHGQGHKSIL 312 (558)
Q Consensus 236 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~ 312 (558)
.-.|+.-.|..-|+..++....++. .|--+..+|....+-++.+..|+...+ .|+.+|..-.+.+.-.+++++|..
T Consensus 337 fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ldp~n~dvYyHRgQm~flL~q~e~A~a 415 (606)
T KOG0547|consen 337 FLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLDPENPDVYYHRGQMRFLLQQYEEAIA 415 (606)
T ss_pred hhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcCCCCCchhHhHHHHHHHHHHHHHHHH
Confidence 3457888888888888887644433 366677889999999999999998764 377788888888888899999999
Q ss_pred HHHHHHHCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 036003 313 MFEEMMKAQVSPD-EITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PI 390 (558)
Q Consensus 313 ~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 390 (558)
-|++.+. +.|+ ...|..+.-+..+.+++++++..|++..+ .++..+.+|+-....+..++++++|.+.|+.. ..
T Consensus 416 DF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kk--kFP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~L 491 (606)
T KOG0547|consen 416 DFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKK--KFPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIEL 491 (606)
T ss_pred HHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHH--hCCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhh
Confidence 9999988 4554 46777777777889999999999999987 67778899999999999999999999999986 33
Q ss_pred CCC---------HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHH
Q 036003 391 KST---------PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMK 455 (558)
Q Consensus 391 ~~~---------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 455 (558)
.|+ +.+-..++..-. .+++..|.++++++++++|....+|..|+..-.+.|+.++|.++|++-.
T Consensus 492 E~~~~~~~v~~~plV~Ka~l~~qw-k~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 492 EPREHLIIVNAAPLVHKALLVLQW-KEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred ccccccccccchhhhhhhHhhhch-hhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 333 223333333333 3899999999999999999999999999999999999999999998764
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.56 E-value=7.2e-11 Score=113.93 Aligned_cols=387 Identities=11% Similarity=0.068 Sum_probs=286.1
Q ss_pred HhhcCCCCCCHHHHHHHHccCCC---CCcccHHHHHHHHhcCCCchHHHHHHHHh----HHCCCCCCcccHHHHHHHHHh
Q 036003 62 FCTQNPTTSSMEHAHLLFDRIPE---PDIVLFNTMARGYSRSKTPIRAIFLFVEL----LNSGLLPDDYSFPSLLKACAC 134 (558)
Q Consensus 62 ~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m----~~~g~~p~~~~~~~ll~~~~~ 134 (558)
+|++. ..++.|.+++.+..+ .+...|.+-...=-.+|..+...+++.+- ...|+..+..-|..=...|-.
T Consensus 415 AlarL---etYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~ 491 (913)
T KOG0495|consen 415 ALARL---ETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACED 491 (913)
T ss_pred HHHHH---HHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhh
Confidence 44455 556666666665443 35556655555555667776666665543 345777777777766677776
Q ss_pred cCcccHHHHHHHHHHHHHhCCCC--hHHHHHHHHHHHHhCCChHHHHHHHhccCC---CCcchHHHHHHHHHHCCCccHH
Q 036003 135 VGAEALEEGKQLHCFAIKLGLNS--NLYVCTTLINLYAECSDVEAARRIFENISE---PCVVSYNAIITAYARSSRPNEA 209 (558)
Q Consensus 135 ~~~~~~~~a~~~~~~~~~~g~~~--~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A 209 (558)
. |.+-.+..+....+..|+.. ...||+.-...|.+.+.++-|..+|....+ .+...|...+..--..|..+.-
T Consensus 492 a--gsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl 569 (913)
T KOG0495|consen 492 A--GSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESL 569 (913)
T ss_pred c--CChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHH
Confidence 6 77777777777777776543 345777777888888888888888888776 3455677776666677888888
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC-
Q 036003 210 LSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSG- 288 (558)
Q Consensus 210 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 288 (558)
..+|++.... ++-....|.....-+-..|+...|..++..+.+.. +.+...|-+-+...+....++.|..+|.+...
T Consensus 570 ~Allqkav~~-~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~-pnseeiwlaavKle~en~e~eraR~llakar~~ 647 (913)
T KOG0495|consen 570 EALLQKAVEQ-CPKAEILWLMYAKEKWKAGDVPAARVILDQAFEAN-PNSEEIWLAAVKLEFENDELERARDLLAKARSI 647 (913)
T ss_pred HHHHHHHHHh-CCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhC-CCcHHHHHHHHHHhhccccHHHHHHHHHHHhcc
Confidence 8888888775 33344455555566667799999999999988875 33677888888889999999999999988764
Q ss_pred -CCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHH
Q 036003 289 -KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDE-ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYG 366 (558)
Q Consensus 289 -~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 366 (558)
+....|.--+..---.+..++|++++++..+ .-|+- ..|..+.+.+-+.++++.|...|..-.+ .++.....|-
T Consensus 648 sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k--~cP~~ipLWl 723 (913)
T KOG0495|consen 648 SGTERVWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK--KCPNSIPLWL 723 (913)
T ss_pred CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc--cCCCCchHHH
Confidence 4666776666666777889999999998887 35554 5677788888889999999988877664 4555677888
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC-----------------
Q 036003 367 CMVDLLGRAGRLDEAYRFIDEL--PIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH----------------- 427 (558)
Q Consensus 367 ~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----------------- 427 (558)
.|...-.+.|++-+|..++++. +.+.+...|-..|..-.+.|+.+.|..+..++++.-|.+
T Consensus 724 lLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~~~~rk 803 (913)
T KOG0495|consen 724 LLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEPRPQRK 803 (913)
T ss_pred HHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhccCcccc
Confidence 8888888999999999999987 433467889999999999999999999998888765554
Q ss_pred -------------cccHHhHHHHHHhcCChHHHHHHHHHHHhCCC
Q 036003 428 -------------GGDYVILSNLCARAGRWEDVDYLRKLMKDRGV 459 (558)
Q Consensus 428 -------------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 459 (558)
+.........+....+++.|.+-|.+.++.+.
T Consensus 804 Tks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~ 848 (913)
T KOG0495|consen 804 TKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDP 848 (913)
T ss_pred hHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence 33444566667777788888888888776543
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.55 E-value=7.6e-12 Score=123.15 Aligned_cols=276 Identities=13% Similarity=0.059 Sum_probs=160.8
Q ss_pred CCCchHHHHHHHHhHHCCCCCCcccHHHHHHHH--HhcCcccHHHHHHHHHHHHHhCCCChHHHHH--HHHHHHHhCCCh
Q 036003 100 SKTPIRAIFLFVELLNSGLLPDDYSFPSLLKAC--ACVGAEALEEGKQLHCFAIKLGLNSNLYVCT--TLINLYAECSDV 175 (558)
Q Consensus 100 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~--~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~--~ll~~~~~~g~~ 175 (558)
.|++++|.+.+....+.+- + ...+.++.+. ... |+.+.+...+.++.+. .|+..... .....+...|++
T Consensus 97 eGd~~~A~k~l~~~~~~~~--~-p~l~~llaA~aA~~~--g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~ 169 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAE--Q-PVVNYLLAAEAAQQR--GDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNEN 169 (398)
T ss_pred CCCHHHHHHHHHHHHhccc--c-hHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCH
Confidence 4677777666655444311 1 1222222222 333 6777777777776653 33332222 234566667777
Q ss_pred HHHHHHHhccCC---CCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHhccCChHHHH
Q 036003 176 EAARRIFENISE---PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDV-------TMLSALSSCALLGSLDLGK 245 (558)
Q Consensus 176 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-------~~~~ll~~~~~~~~~~~a~ 245 (558)
+.|...++++.+ .+...+..+...|.+.|++++|.+++..+.+.+..++.. +|..++.......+.+...
T Consensus 170 ~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~ 249 (398)
T PRK10747 170 HAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLK 249 (398)
T ss_pred HHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHH
Confidence 777777766654 234456666677777777777777777776665432221 2222233333333444445
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCC-
Q 036003 246 WIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP- 324 (558)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p- 324 (558)
++++.+.+. .+.+......+...+...|+.++|.+++++..+.....--.++.+....++.+++++..++..+. .|
T Consensus 250 ~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~~~~~~l~~l~~~l~~~~~~~al~~~e~~lk~--~P~ 326 (398)
T PRK10747 250 RWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKRQYDERLVLLIPRLKTNNPEQLEKVLRQQIKQ--HGD 326 (398)
T ss_pred HHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHHHHHHHhhccCCChHHHHHHHHHHHhh--CCC
Confidence 555544332 23455566667777777777777777776665432222222334444557777777777777764 34
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 036003 325 DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL 388 (558)
Q Consensus 325 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 388 (558)
|...+..+...|.+.+++++|.+.|+...+ ..|+...+..+...+.+.|+.++|.+++++.
T Consensus 327 ~~~l~l~lgrl~~~~~~~~~A~~~le~al~---~~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 327 TPLLWSTLGQLLMKHGEWQEASLAFRAALK---QRPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 344566677777777778888777777763 4577777777777777777777777777654
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.54 E-value=8.1e-11 Score=109.27 Aligned_cols=241 Identities=15% Similarity=0.158 Sum_probs=141.4
Q ss_pred ccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCC------CCcchHHHHHHHHHHCCCccHHHH
Q 036003 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE------PCVVSYNAIITAYARSSRPNEALS 211 (558)
Q Consensus 138 ~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~ 211 (558)
...+++.+-.......|++-+...-+-...+.....|+++|+.+|+++.+ .|..+|+.++. .++.+.. +.
T Consensus 241 ~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LY--v~~~~sk--Ls 316 (559)
T KOG1155|consen 241 HQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLY--VKNDKSK--LS 316 (559)
T ss_pred HHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHH--HHhhhHH--HH
Confidence 45555666666666666655555555555555566677777777777665 24445554442 2222211 11
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---
Q 036003 212 LFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSG--- 288 (558)
Q Consensus 212 ~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--- 288 (558)
.+..-...--+--+.|.-.+.+-|+-.++.++|..+|++..+.+ +.....|+.+..-|....+...|.+-|+...+
T Consensus 317 ~LA~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN-p~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p 395 (559)
T KOG1155|consen 317 YLAQNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKLN-PKYLSAWTLMGHEYVEMKNTHAAIESYRRAVDINP 395 (559)
T ss_pred HHHHHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhcC-cchhHHHHHhhHHHHHhcccHHHHHHHHHHHhcCc
Confidence 11111110011223355555666666667777777777776654 33455666666777777777777777766543
Q ss_pred CCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHH
Q 036003 289 KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP-DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGC 367 (558)
Q Consensus 289 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 367 (558)
.|-..|--|.++|.-.+.+.-|+-.|++..+ ++| |...+..|..+|.+.+++++|...|..... .-..+...+..
T Consensus 396 ~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~--~~dte~~~l~~ 471 (559)
T KOG1155|consen 396 RDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYEKLNRLEEAIKCYKRAIL--LGDTEGSALVR 471 (559)
T ss_pred hhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHh--ccccchHHHHH
Confidence 3556666777777777777777777777666 344 446666777777777777777777776665 22334466666
Q ss_pred HHHHHhhcCCHHHHHHHHHh
Q 036003 368 MVDLLGRAGRLDEAYRFIDE 387 (558)
Q Consensus 368 li~~~~~~g~~~~A~~~~~~ 387 (558)
|.+.|.+.++..+|...|++
T Consensus 472 LakLye~l~d~~eAa~~yek 491 (559)
T KOG1155|consen 472 LAKLYEELKDLNEAAQYYEK 491 (559)
T ss_pred HHHHHHHHHhHHHHHHHHHH
Confidence 77777777777777666654
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.53 E-value=5.4e-14 Score=132.20 Aligned_cols=258 Identities=19% Similarity=0.138 Sum_probs=86.6
Q ss_pred HHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 036003 92 TMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAE 171 (558)
Q Consensus 92 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 171 (558)
.+...+.+.|++++|++++++.......|+...|-.++..++... ++.+.|...++++...+. -+...+..++.. ..
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~-~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~ 89 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSL-GDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQ 89 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccc-cccccccccccc-cc
Confidence 345666677777777777755443322344444444333333322 777777777777776652 255556666666 57
Q ss_pred CCChHHHHHHHhccCC--CCcchHHHHHHHHHHCCCccHHHHHHHHHHHCC-CCCCHHHHHHHHHHHhccCChHHHHHHH
Q 036003 172 CSDVEAARRIFENISE--PCVVSYNAIITAYARSSRPNEALSLFRELQERN-LKPTDVTMLSALSSCALLGSLDLGKWIH 248 (558)
Q Consensus 172 ~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 248 (558)
.+++++|.++++..-+ ++...+..++..+.+.++++++.++++...... .+.+...|..+...+.+.|+.++|...+
T Consensus 90 ~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 90 DGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred cccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7777777777765533 455566667777777777777777777765432 2345566666777777777777777777
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCC
Q 036003 249 EYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS---GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPD 325 (558)
Q Consensus 249 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 325 (558)
++..+.. |.+..+.+.++..+...|+.+++.++++... ..|...|..+..+|...|+.++|+.+|++..+.. +.|
T Consensus 170 ~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~-p~d 247 (280)
T PF13429_consen 170 RKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALKLN-PDD 247 (280)
T ss_dssp HHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHS-TT-
T ss_pred HHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccccc-ccc
Confidence 7777764 3345566667777777777777666655543 2355566677777777777777777777766632 225
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHchh
Q 036003 326 EITFLGLLYACSHTGLVDEGWNYFYSMRD 354 (558)
Q Consensus 326 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 354 (558)
......+..++...|+.++|.++.+++..
T Consensus 248 ~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 248 PLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp HHHHHHHHHHHT-----------------
T ss_pred ccccccccccccccccccccccccccccc
Confidence 56666677777777777777777665543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.52 E-value=6.6e-11 Score=109.85 Aligned_cols=325 Identities=12% Similarity=0.076 Sum_probs=235.0
Q ss_pred cHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCCCCc-chHHHHHHHHHH
Q 036003 124 SFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCV-VSYNAIITAYAR 202 (558)
Q Consensus 124 ~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~li~~~~~ 202 (558)
.|..-|.+......|....|...|...+..- +-.-..|..|... ..+.+.+..+.......+. ..---+..++..
T Consensus 164 ~fllYL~Gvv~k~~~~~s~A~~sfv~~v~~~-P~~W~AWleL~~l---it~~e~~~~l~~~l~~~~h~M~~~F~~~a~~e 239 (559)
T KOG1155|consen 164 EFLLYLYGVVLKELGLLSLAIDSFVEVVNRY-PWFWSAWLELSEL---ITDIEILSILVVGLPSDMHWMKKFFLKKAYQE 239 (559)
T ss_pred hHHHHHHHHHHHhhchHHHHHHHHHHHHhcC-CcchHHHHHHHHh---hchHHHHHHHHhcCcccchHHHHHHHHHHHHH
Confidence 4444444433333378888888887776542 3343444444333 3444444444433332211 111223456666
Q ss_pred CCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCC--CCchhHHHHHHHHHHhcCCHHHHH
Q 036003 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL--DKYVKVNTALIDMHAKCGRLDDAV 280 (558)
Q Consensus 203 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~ 280 (558)
..+.+++.+-.......|.+-+...-+....+.-...++|+|+.+|+++.+... --|..+|+.++-.--.+.++.---
T Consensus 240 l~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA 319 (559)
T KOG1155|consen 240 LHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLA 319 (559)
T ss_pred HHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHH
Confidence 678888888888888888766666656666666788899999999999998742 125667766653332222222111
Q ss_pred HHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHchhhcCCC
Q 036003 281 SVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDE-ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIV 359 (558)
Q Consensus 281 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 359 (558)
...-.+.+--+.|...+..-|+-.++.++|...|++..+. .|.. ..|+.+..-|....+...|.+.++...+ -.+
T Consensus 320 ~~v~~idKyR~ETCCiIaNYYSlr~eHEKAv~YFkRALkL--Np~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd--i~p 395 (559)
T KOG1155|consen 320 QNVSNIDKYRPETCCIIANYYSLRSEHEKAVMYFKRALKL--NPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD--INP 395 (559)
T ss_pred HHHHHhccCCccceeeehhHHHHHHhHHHHHHHHHHHHhc--CcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh--cCc
Confidence 2222233335667777888888899999999999999984 4554 5677777789999999999999999986 455
Q ss_pred CChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHH
Q 036003 360 PGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNL 437 (558)
Q Consensus 360 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 437 (558)
.|-..|-.|.++|.-.+...-|+-+|++. ..+| |...|.+|..+|.+.++.++|++.|.+++..+..+...|..|+..
T Consensus 396 ~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakL 475 (559)
T KOG1155|consen 396 RDYRAWYGLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKL 475 (559)
T ss_pred hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHH
Confidence 68889999999999999999999999998 4455 789999999999999999999999999999998888999999999
Q ss_pred HHhcCChHHHHHHHHHHHh
Q 036003 438 CARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 438 ~~~~g~~~~A~~~~~~m~~ 456 (558)
|.+.++.++|...+++-.+
T Consensus 476 ye~l~d~~eAa~~yek~v~ 494 (559)
T KOG1155|consen 476 YEELKDLNEAAQYYEKYVE 494 (559)
T ss_pred HHHHHhHHHHHHHHHHHHH
Confidence 9999999999999988765
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.5e-12 Score=126.23 Aligned_cols=276 Identities=14% Similarity=0.045 Sum_probs=195.3
Q ss_pred ChHHHHHHHhccCC--CCc-chHHHHHHHHHHCCCccHHHHHHHHHHHCC--CCCCHHHHHHHHHHHhccCChHHHHHHH
Q 036003 174 DVEAARRIFENISE--PCV-VSYNAIITAYARSSRPNEALSLFRELQERN--LKPTDVTMLSALSSCALLGSLDLGKWIH 248 (558)
Q Consensus 174 ~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 248 (558)
+..+|...|.++++ +|. .....+..+|...+++++|.++|+.+.+.. ..-+..+|.+.+--+-+. -+...+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHHH
Confidence 45778888887654 333 344556778888888888888888887642 112556777666543221 122222
Q ss_pred H-HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC---CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCC
Q 036003 249 E-YIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK---DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP 324 (558)
Q Consensus 249 ~-~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 324 (558)
. .+.+. -+..+.+|.++.++|.-+++.+.|++.|++...- ...+|+.+..-+.....+|+|...|+..+. +.|
T Consensus 410 aq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~~ 486 (638)
T KOG1126|consen 410 AQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VDP 486 (638)
T ss_pred HHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CCc
Confidence 2 22222 2455778888888888888888888888887644 456778888888888888888888888765 334
Q ss_pred CH-HHHHHHHHHHHccCChHHHHHHHHHchhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHH
Q 036003 325 DE-ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVP-GIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTL 400 (558)
Q Consensus 325 ~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l 400 (558)
.. ..|..|...|.+.++++.|+-.|+++.+ +.| +......+...+.+.|+.++|++++++. ...| |+..-.-.
T Consensus 487 rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~---INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~~ 563 (638)
T KOG1126|consen 487 RHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE---INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYHR 563 (638)
T ss_pred hhhHHHHhhhhheeccchhhHHHHHHHhhhc---CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHHH
Confidence 33 4566677778888888888888888874 444 4556666777788888888888888887 2233 44444445
Q ss_pred HHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhCCC
Q 036003 401 LSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGV 459 (558)
Q Consensus 401 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 459 (558)
+..+...+++++|++.++++.+.-|++...|..++..|.+.|+.+.|..-|--+.+...
T Consensus 564 ~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldp 622 (638)
T KOG1126|consen 564 ASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDP 622 (638)
T ss_pred HHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCC
Confidence 66677788888888888888888888888888888888888888888888777766443
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.9e-10 Score=105.24 Aligned_cols=285 Identities=13% Similarity=0.034 Sum_probs=174.2
Q ss_pred HHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCC----CCcchHHHHHHHHHHCC
Q 036003 129 LKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE----PCVVSYNAIITAYARSS 204 (558)
Q Consensus 129 l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g 204 (558)
..+..+..+|++.+|++...+..+.+-.| ...|..-..+--+.||.+.+-..+.+..+ ++...+-+........|
T Consensus 89 ~egl~~l~eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~ 167 (400)
T COG3071 89 NEGLLKLFEGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRR 167 (400)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCC
Confidence 33444444477777777777766655332 33344445566667777777777776655 23334555566677777
Q ss_pred CccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCch-------hHHHHHHHHHHhcCCHH
Q 036003 205 RPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYV-------KVNTALIDMHAKCGRLD 277 (558)
Q Consensus 205 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~ 277 (558)
+++.|..-++++.+.+ +-..........+|.+.|++.....++..+.+.+.-.+. .+|+.+++-....+..+
T Consensus 168 d~~aA~~~v~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~ 246 (400)
T COG3071 168 DYPAARENVDQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSE 246 (400)
T ss_pred CchhHHHHHHHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccch
Confidence 7777777777776653 334556666677777777777777777777776644332 34444554444444444
Q ss_pred HHHHHHhccCC---CCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchh
Q 036003 278 DAVSVFDNMSG---KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRD 354 (558)
Q Consensus 278 ~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 354 (558)
.-...++..+. .++..-.+++.-+.+.|+.++|.++.++..+++..|+ -...-.+.+.++...-.+..+.-.+
T Consensus 247 gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~----L~~~~~~l~~~d~~~l~k~~e~~l~ 322 (400)
T COG3071 247 GLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPR----LCRLIPRLRPGDPEPLIKAAEKWLK 322 (400)
T ss_pred HHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChh----HHHHHhhcCCCCchHHHHHHHHHHH
Confidence 44455555542 2555666666667777777777777777776665555 1222234555666665665555555
Q ss_pred hcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036003 355 KYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKSTPILWRTLLSSCSSHNNLGLAKQVIERIF 421 (558)
Q Consensus 355 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 421 (558)
.++..| ..+.+|...|.+.+.+.+|.+.|+.. +..|+..+|+-+.+++.+.|+..+|.++.++.+
T Consensus 323 ~h~~~p--~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 323 QHPEDP--LLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred hCCCCh--hHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 333333 56666777777777777777777655 556677777777777777777777777766665
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.51 E-value=6.8e-10 Score=103.43 Aligned_cols=400 Identities=13% Similarity=0.134 Sum_probs=294.1
Q ss_pred CChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCC---CCcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHH
Q 036003 51 NDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE---PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPS 127 (558)
Q Consensus 51 ~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ 127 (558)
.+...|-.....=... +++..|..+|++... .+...|-..+..=.++..+..|..+++.....=...|..-|.
T Consensus 71 ~~~~~WikYaqwEesq---~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyK- 146 (677)
T KOG1915|consen 71 LNMQVWIKYAQWEESQ---KEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYK- 146 (677)
T ss_pred HHHHHHHHHHHHHHhH---HHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHH-
Confidence 4445555555555555 889999999999875 566778888888899999999999999988753333332222
Q ss_pred HHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccC--CCCcchHHHHHHHHHHCCC
Q 036003 128 LLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENIS--EPCVVSYNAIITAYARSSR 205 (558)
Q Consensus 128 ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~ 205 (558)
-+..=-.. |++..|.++|+.-.+ ..|+...|++.|+.=.+-..++.|..++++.. .|++.+|--....-.+.|+
T Consensus 147 Y~ymEE~L--gNi~gaRqiferW~~--w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~ 222 (677)
T KOG1915|consen 147 YIYMEEML--GNIAGARQIFERWME--WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGN 222 (677)
T ss_pred HHHHHHHh--cccHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCc
Confidence 22222234 999999999998876 58999999999999999999999999999976 4999999999999999999
Q ss_pred ccHHHHHHHHHHHCCCCCCHHHHHHHHHHH----hccCChHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCCHHHH
Q 036003 206 PNEALSLFRELQERNLKPTDVTMLSALSSC----ALLGSLDLGKWIHEYIKKYGLDKY--VKVNTALIDMHAKCGRLDDA 279 (558)
Q Consensus 206 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~----~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A 279 (558)
...|..+|....+. -.|...-..+..++ .+...++.|.-+|+...++= +.+ ...|..+...--+-|+....
T Consensus 223 ~~~aR~VyerAie~--~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~-pk~raeeL~k~~~~fEKqfGd~~gI 299 (677)
T KOG1915|consen 223 VALARSVYERAIEF--LGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHI-PKGRAEELYKKYTAFEKQFGDKEGI 299 (677)
T ss_pred HHHHHHHHHHHHHH--hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-CcccHHHHHHHHHHHHHHhcchhhh
Confidence 99999999987664 22333333344444 45667888998998888763 322 44555555444455655444
Q ss_pred HHHH--------hccCCC---CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCH--H-----HHHHHHHHH---Hc
Q 036003 280 VSVF--------DNMSGK---DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDE--I-----TFLGLLYAC---SH 338 (558)
Q Consensus 280 ~~~~--------~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~-----~~~~ll~~~---~~ 338 (558)
.+.. +.+.+. |-.+|--.+..--..|+.+...++|++.+.. ++|-. . .|.-+=-+| ..
T Consensus 300 Ed~Iv~KRk~qYE~~v~~np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle 378 (677)
T KOG1915|consen 300 EDAIVGKRKFQYEKEVSKNPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELE 378 (677)
T ss_pred HHHHhhhhhhHHHHHHHhCCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHH
Confidence 3322 222222 5667777777777889999999999999875 55532 1 122221122 35
Q ss_pred cCChHHHHHHHHHchhhcCCCCChhHHHHHHHHH----hhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHH
Q 036003 339 TGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLL----GRAGRLDEAYRFIDEL-PIKSTPILWRTLLSSCSSHNNLGLA 413 (558)
Q Consensus 339 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~----~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a 413 (558)
..+.+.+.++|+...+ -++....|+.-+--+| .++.++..|.+++... +.-|...+|...|..-.+.++++..
T Consensus 379 ~ed~ertr~vyq~~l~--lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRc 456 (677)
T KOG1915|consen 379 AEDVERTRQVYQACLD--LIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRC 456 (677)
T ss_pred hhhHHHHHHHHHHHHh--hcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHH
Confidence 6789999999999885 4555556665544444 4788999999999876 7788889999999999999999999
Q ss_pred HHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhCCCccCCc
Q 036003 414 KQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPG 464 (558)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 464 (558)
..++++.++-+|.+..+|.-.+..-...|+++.|..+|+-.......-.|.
T Consensus 457 RkLYEkfle~~Pe~c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpe 507 (677)
T KOG1915|consen 457 RKLYEKFLEFSPENCYAWSKYAELETSLGDTDRARAIFELAISQPALDMPE 507 (677)
T ss_pred HHHHHHHHhcChHhhHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHH
Confidence 999999999999999999988888889999999999999888765543343
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.50 E-value=6.3e-12 Score=121.89 Aligned_cols=280 Identities=15% Similarity=0.110 Sum_probs=223.0
Q ss_pred ccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCC------CCcchHHHHHHHHHHCCCccHHHH
Q 036003 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE------PCVVSYNAIITAYARSSRPNEALS 211 (558)
Q Consensus 138 ~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~ 211 (558)
-+.++|...|..+... +.-+..+...+..+|...+++++|+++|+.+.+ .+...|.+.+.-+-+. -++.
T Consensus 333 y~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls 407 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALS 407 (638)
T ss_pred HHHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHH
Confidence 4567888888885444 333447778889999999999999999999875 5677888877644332 1222
Q ss_pred HH-HHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCC
Q 036003 212 LF-RELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKD 290 (558)
Q Consensus 212 ~~-~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 290 (558)
.+ +.+.+. -+-.+.+|-.+.++|.-.++.+.|.+.|++....+ +-...+|+.+..-+.....+|.|...|+.....|
T Consensus 408 ~Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQld-p~faYayTLlGhE~~~~ee~d~a~~~fr~Al~~~ 485 (638)
T KOG1126|consen 408 YLAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLD-PRFAYAYTLLGHESIATEEFDKAMKSFRKALGVD 485 (638)
T ss_pred HHHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccC-CccchhhhhcCChhhhhHHHHhHHHHHHhhhcCC
Confidence 22 233332 24567899999999999999999999999998864 3367889989999999999999999999998877
Q ss_pred HHhHHH---HHHHHHHCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHH
Q 036003 291 TQAWSA---MIVAYATHGQGHKSILMFEEMMKAQVSP-DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYG 366 (558)
Q Consensus 291 ~~~~~~---li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 366 (558)
+..||+ +...|.+.++++.|+-.|++..+ +.| +.+....+...+.+.|+.++|+++++++.. --+.|+..--
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~--INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~--ld~kn~l~~~ 561 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVE--INPSNSVILCHIGRIQHQLKRKDKALQLYEKAIH--LDPKNPLCKY 561 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhhc--CCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHh--cCCCCchhHH
Confidence 766655 56789999999999999999998 555 457777888888999999999999999985 2233455545
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCc
Q 036003 367 CMVDLLGRAGRLDEAYRFIDEL-PIKST-PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHG 428 (558)
Q Consensus 367 ~li~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 428 (558)
.-+..+...+++++|+..++++ ...|+ ...+..+...|.+.|+.+.|+.-|--+.+++|.-.
T Consensus 562 ~~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpkg~ 625 (638)
T KOG1126|consen 562 HRASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPKGA 625 (638)
T ss_pred HHHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCccc
Confidence 5667788899999999999999 44565 56788889999999999999999999999998743
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.50 E-value=1.6e-10 Score=115.92 Aligned_cols=313 Identities=11% Similarity=0.084 Sum_probs=208.4
Q ss_pred CCHHHHHHHHccCCC---CCcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHH
Q 036003 70 SSMEHAHLLFDRIPE---PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQL 146 (558)
Q Consensus 70 ~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~ 146 (558)
|++++|.+++.++.. .+...|..|...|-..|+.++++..+-..-... +-|...|..+-.-..+. |++++|.-.
T Consensus 153 g~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~--~~i~qA~~c 229 (895)
T KOG2076|consen 153 GDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQL--GNINQARYC 229 (895)
T ss_pred CCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhc--ccHHHHHHH
Confidence 889999998888765 355678888888988998888888765544332 22556677777777777 889999999
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCCCCc--------chHHHHHHHHHHCCCccHHHHHHHHHHH
Q 036003 147 HCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCV--------VSYNAIITAYARSSRPNEALSLFRELQE 218 (558)
Q Consensus 147 ~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~li~~~~~~g~~~~A~~~~~~m~~ 218 (558)
|.++++.. +++...+---...|-+.|+...|.+-|.++.+.+. ..--..+..+...++-+.|.+.++....
T Consensus 230 y~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 230 YSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 98888875 45555555567788888998888888887765222 1122334556666767888888877655
Q ss_pred C-CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhC---------------------------CCCchhH-HHHHHHH
Q 036003 219 R-NLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYG---------------------------LDKYVKV-NTALIDM 269 (558)
Q Consensus 219 ~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~---------------------------~~~~~~~-~~~l~~~ 269 (558)
. +-..+...++.++..+.+...++.+........... +.++..+ ...+.-.
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~ 388 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLV 388 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhh
Confidence 2 223345567777777888888888877776665511 2233333 1111122
Q ss_pred HHhcCCHHHHHHHHhccC----CCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHH
Q 036003 270 HAKCGRLDDAVSVFDNMS----GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG 345 (558)
Q Consensus 270 ~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 345 (558)
..+.+...+++..|-... ..++..|.-+..+|.+.|++.+|+.+|..+......-+...|..+..+|...|.+++|
T Consensus 389 ~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred cccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence 223334444433332222 1245567777788888888888888888887754444566777778888888888888
Q ss_pred HHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 036003 346 WNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL 388 (558)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 388 (558)
.+.|+.+.. --+.+...--.|...+.+.|+.++|.+.+..+
T Consensus 469 ~e~y~kvl~--~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~ 509 (895)
T KOG2076|consen 469 IEFYEKVLI--LAPDNLDARITLASLYQQLGNHEKALETLEQI 509 (895)
T ss_pred HHHHHHHHh--cCCCchhhhhhHHHHHHhcCCHHHHHHHHhcc
Confidence 888888775 33334555566777788888888888888776
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.49 E-value=3.3e-11 Score=119.38 Aligned_cols=292 Identities=15% Similarity=0.017 Sum_probs=195.4
Q ss_pred HHHHHHHHh--cCCCchHHHHHHHHhHHCCCCCCcccHHHH-HHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHH
Q 036003 90 FNTMARGYS--RSKTPIRAIFLFVELLNSGLLPDDYSFPSL-LKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLI 166 (558)
Q Consensus 90 ~~~li~~~~--~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll 166 (558)
+..+.+++. ..|+++.|.+.+.+..+. .|+...+-.+ ..+.... |+.+.+.+.+.++.+....+...+.-...
T Consensus 85 ~~~~~~glla~~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~--g~~~~A~~~l~~a~~~~p~~~l~~~~~~a 160 (409)
T TIGR00540 85 QKQTEEALLKLAEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQR--GDEARANQHLEEAAELAGNDNILVEIART 160 (409)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHhCCcCchHHHHHHH
Confidence 333444443 468888998888877664 3443333222 3344445 88999999998887653222223444457
Q ss_pred HHHHhCCChHHHHHHHhccCC--C-CcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHH---hccCC
Q 036003 167 NLYAECSDVEAARRIFENISE--P-CVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSC---ALLGS 240 (558)
Q Consensus 167 ~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~---~~~~~ 240 (558)
..+...|+++.|...++.+.+ | +...+..+...+.+.|++++|.+.+..+.+.++.+.......-..++ ...+.
T Consensus 161 ~l~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~~l~~~~ 240 (409)
T TIGR00540 161 RILLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDDEEFADLEQKAEIGLLDEAM 240 (409)
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 778888999999988888875 3 55567788888899999999999999988876543322211111111 22222
Q ss_pred hHHHHHHHHHHHHhCC---CCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CHHh---HHHHHHHHHHCCChHHHHH
Q 036003 241 LDLGKWIHEYIKKYGL---DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK--DTQA---WSAMIVAYATHGQGHKSIL 312 (558)
Q Consensus 241 ~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~---~~~li~~~~~~~~~~~a~~ 312 (558)
.+++...+..+.+... +.+...+..+...+...|+.++|.+++++..+. |... ...........++.+.+.+
T Consensus 241 ~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~pd~~~~~~~~l~~~~~l~~~~~~~~~~ 320 (409)
T TIGR00540 241 ADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKLGDDRAISLPLCLPIPRLKPEDNEKLEK 320 (409)
T ss_pred HhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhCCCcccchhHHHHHhhhcCCCChHHHHH
Confidence 2333334444444321 236778888888999999999999999888653 2221 1222223344577888888
Q ss_pred HHHHHHHCCCCCCH---HHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 036003 313 MFEEMMKAQVSPDE---ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL 388 (558)
Q Consensus 313 ~~~~m~~~g~~p~~---~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 388 (558)
.++...+. .|+. ....++...+.+.|++++|.+.|+..... ...|+...+..+...+.+.|+.++|.+++++.
T Consensus 321 ~~e~~lk~--~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~-~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 321 LIEKQAKN--VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAAC-KEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHh--CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHh-hcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 88887774 4444 45567788889999999999999964432 56788888889999999999999999999874
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.49 E-value=8.3e-11 Score=108.69 Aligned_cols=393 Identities=12% Similarity=0.074 Sum_probs=216.3
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHccCCC----CCccc-HHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHH
Q 036003 55 VLTKLINFCTQNPTTSSMEHAHLLFDRIPE----PDIVL-FNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLL 129 (558)
Q Consensus 55 ~~~~li~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~-~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 129 (558)
+...|..-|... ....+|+..++-+.+ |+... --.+...+.+.+.+.+|++.|+-.+.+-...+..+-..++
T Consensus 203 vl~nlaqqy~~n---dm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil 279 (840)
T KOG2003|consen 203 VLFNLAQQYEAN---DMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKIL 279 (840)
T ss_pred HHHHHHHHhhhh---HHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHH
Confidence 344444555555 566666666665543 33222 2234455666667777777776655542222222222222
Q ss_pred ----HHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCC----------------CC
Q 036003 130 ----KACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE----------------PC 189 (558)
Q Consensus 130 ----~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----------------~~ 189 (558)
-.+.+. |.++.|+..|+...+. .|+..+--.|+-++..-|+.++..+.|.+|.. |+
T Consensus 280 ~nigvtfiq~--gqy~dainsfdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~ 355 (840)
T KOG2003|consen 280 NNIGVTFIQA--GQYDDAINSFDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPD 355 (840)
T ss_pred hhcCeeEEec--ccchhhHhhHHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcc
Confidence 234455 7777777777777664 46655555555566666777777777766642 22
Q ss_pred cchHHHHH-----HHHHHCC--CccHHHHHHHHHHHCCCCCCHHH-H------------HH--------HHHHHhccCCh
Q 036003 190 VVSYNAII-----TAYARSS--RPNEALSLFRELQERNLKPTDVT-M------------LS--------ALSSCALLGSL 241 (558)
Q Consensus 190 ~~~~~~li-----~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~~-~------------~~--------ll~~~~~~~~~ 241 (558)
....|.-| .-+-+.+ +.++++-.-.++..--+.|+-.. + .- -..-+.+.|++
T Consensus 356 ~~ll~eai~nd~lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~ 435 (840)
T KOG2003|consen 356 DNLLNEAIKNDHLKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDI 435 (840)
T ss_pred hHHHHHHHhhHHHHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCH
Confidence 22222211 1111111 11111111111221112222110 0 00 01124556777
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHH------------------------------------HHHhcCCHHHHHHHHhc
Q 036003 242 DLGKWIHEYIKKYGLDKYVKVNTALID------------------------------------MHAKCGRLDDAVSVFDN 285 (558)
Q Consensus 242 ~~a~~~~~~~~~~~~~~~~~~~~~l~~------------------------------------~~~~~g~~~~A~~~~~~ 285 (558)
+.|.++++-..+..-..-...-+.|-. .....|++++|.+.|++
T Consensus 436 ~~aieilkv~~~kdnk~~saaa~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~yke 515 (840)
T KOG2003|consen 436 EGAIEILKVFEKKDNKTASAAANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKE 515 (840)
T ss_pred HHHHHHHHHHHhccchhhHHHhhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHH
Confidence 777776665554322111111111111 11123667777777777
Q ss_pred cCCCCHHhHHHH---HHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCCh
Q 036003 286 MSGKDTQAWSAM---IVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGI 362 (558)
Q Consensus 286 ~~~~~~~~~~~l---i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 362 (558)
....|...-.+| .-.+-..|+.++|+..|-++..- +..+...+..+...|....+..+|.+++..... -++.|+
T Consensus 516 al~ndasc~ealfniglt~e~~~~ldeald~f~klh~i-l~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp 592 (840)
T KOG2003|consen 516 ALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHAI-LLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDP 592 (840)
T ss_pred HHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHHH-HHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCH
Confidence 666554433333 23355667777777777666542 233555666667777777777777777776653 455567
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHh
Q 036003 363 KHYGCMVDLLGRAGRLDEAYRFIDEL-PI-KSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCAR 440 (558)
Q Consensus 363 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 440 (558)
....-|.+.|-+.|+-..|.+..-+- .. +-+..+..-|...|....=+++++.+|+++.-+.|.....-..+..++.+
T Consensus 593 ~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rr 672 (840)
T KOG2003|consen 593 AILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRR 672 (840)
T ss_pred HHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHh
Confidence 77778888888888888887765443 22 23555666666667777778889999999887777654444445566778
Q ss_pred cCChHHHHHHHHHHHhC
Q 036003 441 AGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 441 ~g~~~~A~~~~~~m~~~ 457 (558)
.|+++.|+++++....+
T Consensus 673 sgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 673 SGNYQKAFDLYKDIHRK 689 (840)
T ss_pred cccHHHHHHHHHHHHHh
Confidence 89999999999988653
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.47 E-value=1.5e-10 Score=102.70 Aligned_cols=261 Identities=16% Similarity=0.162 Sum_probs=128.0
Q ss_pred ccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCC-CCcc------hHHHHHHHHHHCCCccHHH
Q 036003 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE-PCVV------SYNAIITAYARSSRPNEAL 210 (558)
Q Consensus 138 ~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-~~~~------~~~~li~~~~~~g~~~~A~ 210 (558)
++.++|...|-+|.+.. +.+..+.-+|.+.|.+.|..|.|+++-..+.+ ||.. +...|..-|...|-++.|.
T Consensus 49 ~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE 127 (389)
T COG2956 49 NQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAE 127 (389)
T ss_pred cCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHH
Confidence 45556666666665532 22334445555666666666666666555544 3332 2233445566666666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCch----hHHHHHHHHHHhcCCHHHHHHHHhcc
Q 036003 211 SLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYV----KVNTALIDMHAKCGRLDDAVSVFDNM 286 (558)
Q Consensus 211 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~A~~~~~~~ 286 (558)
.+|..+.+.+ .--......|+..|-...+|++|..+-+++.+.+..+.. ..|.-|...+....+++.|..++.+.
T Consensus 128 ~~f~~L~de~-efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~kA 206 (389)
T COG2956 128 DIFNQLVDEG-EFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLKKA 206 (389)
T ss_pred HHHHHHhcch-hhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHH
Confidence 6666665533 122334455566666666666666666655555433321 12233333334444555555555544
Q ss_pred CCC---CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChh
Q 036003 287 SGK---DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIK 363 (558)
Q Consensus 287 ~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 363 (558)
.+. .+.+--.+...+...|++++|++.|+...+.+..--......|..+|.+.|+.++....+.++.+. .++..
T Consensus 207 lqa~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~---~~g~~ 283 (389)
T COG2956 207 LQADKKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMET---NTGAD 283 (389)
T ss_pred HhhCccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHc---cCCcc
Confidence 322 222333344555555666666666666555432222344555555666666666666666555542 22223
Q ss_pred HHHHHHHHHhhcCCHHHHHHHH-HhCCCCCCHHHHHHHHHH
Q 036003 364 HYGCMVDLLGRAGRLDEAYRFI-DELPIKSTPILWRTLLSS 403 (558)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~l~~~ 403 (558)
.-..+...-....-.+.|..++ +.+..+|+...+..++..
T Consensus 284 ~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~~gf~rl~~~ 324 (389)
T COG2956 284 AELMLADLIELQEGIDAAQAYLTRQLRRKPTMRGFHRLMDY 324 (389)
T ss_pred HHHHHHHHHHHhhChHHHHHHHHHHHhhCCcHHHHHHHHHh
Confidence 3333333333333333333333 233445555555554443
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.43 E-value=4.5e-09 Score=98.08 Aligned_cols=404 Identities=11% Similarity=0.134 Sum_probs=305.6
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCC--CCc-ccHHHHHHHHhcCCCchHHHHHHHHhH
Q 036003 38 KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE--PDI-VLFNTMARGYSRSKTPIRAIFLFVELL 114 (558)
Q Consensus 38 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~ 114 (558)
+.|++...... ..+...|-..+.+=.++ ..+..|..++++... |-+ ..|...+-.=-..|++..|.++|++-.
T Consensus 93 RSv~ERALdvd-~r~itLWlkYae~Emkn---k~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~ 168 (677)
T KOG1915|consen 93 RSVFERALDVD-YRNITLWLKYAEFEMKN---KQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWM 168 (677)
T ss_pred HHHHHHHHhcc-cccchHHHHHHHHHHhh---hhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 66776665544 56677888888888899 999999999998764 332 235555555556789999999999988
Q ss_pred HCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCC------C
Q 036003 115 NSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE------P 188 (558)
Q Consensus 115 ~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~------~ 188 (558)
+ ..|+...|.+.++-=.+. +.++.|..+++..+- +.|+..+|--....=.++|....|..+|+...+ .
T Consensus 169 ~--w~P~eqaW~sfI~fElRy--keieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~ 242 (677)
T KOG1915|consen 169 E--WEPDEQAWLSFIKFELRY--KEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEE 242 (677)
T ss_pred c--CCCcHHHHHHHHHHHHHh--hHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHH
Confidence 7 589999999999998888 999999999999885 468999999888888999999999999998775 2
Q ss_pred CcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCChHHHHHH--------HHHHHHhCCCC
Q 036003 189 CVVSYNAIITAYARSSRPNEALSLFRELQERNLKPT--DVTMLSALSSCALLGSLDLGKWI--------HEYIKKYGLDK 258 (558)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~--------~~~~~~~~~~~ 258 (558)
+...+.+....-.++..++.|.-+|.-.++. ++.+ ...|......=-+-|+....... ++.+.+.+ +.
T Consensus 243 ~e~lfvaFA~fEe~qkE~ERar~iykyAld~-~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n-p~ 320 (677)
T KOG1915|consen 243 AEILFVAFAEFEERQKEYERARFIYKYALDH-IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN-PY 320 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-CC
Confidence 3344555555556678889999999887765 3333 33455444444455665443332 23333333 56
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccCCC-----CHHhHHHH--------HHHHHHCCChHHHHHHHHHHHHCCCCCC
Q 036003 259 YVKVNTALIDMHAKCGRLDDAVSVFDNMSGK-----DTQAWSAM--------IVAYATHGQGHKSILMFEEMMKAQVSPD 325 (558)
Q Consensus 259 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~l--------i~~~~~~~~~~~a~~~~~~m~~~g~~p~ 325 (558)
|-.+|-..+..-...|+.+...++|++.... .-..|..- +-.=....+.+.+.++|+..++. ++-.
T Consensus 321 nYDsWfdylrL~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~l-IPHk 399 (677)
T KOG1915|consen 321 NYDSWFDYLRLEESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDL-IPHK 399 (677)
T ss_pred CchHHHHHHHHHHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh-cCcc
Confidence 7778888888888999999999999987632 11112211 12223568899999999999883 3334
Q ss_pred HHHHHHHHHHH----HccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHH
Q 036003 326 EITFLGLLYAC----SHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRT 399 (558)
Q Consensus 326 ~~~~~~ll~~~----~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~ 399 (558)
.+||.-+=-.| .++.++..|.+++.... |.-|-..++...|..-.+.+.++...+++++. ...| +..+|..
T Consensus 400 kFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI---G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe~c~~W~k 476 (677)
T KOG1915|consen 400 KFTFAKIWLMYAQFEIRQLNLTGARKILGNAI---GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPENCYAWSK 476 (677)
T ss_pred cchHHHHHHHHHHHHHHHcccHHHHHHHHHHh---ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChHhhHHHHH
Confidence 57776554433 46789999999999887 88899999999999999999999999999997 4455 6688988
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHccCCCC--cccHHhHHHHHHhcCChHHHHHHHHHHHhC
Q 036003 400 LLSSCSSHNNLGLAKQVIERIFELDDSH--GGDYVILSNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 400 l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
....-...|+.+.|..+|+-+++....+ ...+-..|+.-...|.++.|..+++++.++
T Consensus 477 yaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~r 536 (677)
T KOG1915|consen 477 YAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDR 536 (677)
T ss_pred HHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHh
Confidence 8888889999999999999998765222 235667777778899999999999999875
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.41 E-value=1.2e-10 Score=114.16 Aligned_cols=231 Identities=15% Similarity=0.146 Sum_probs=174.2
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHh-----C-CCCc-hhHHHHHHHHHHhcCCHHHHHHHHhccCCC--------
Q 036003 225 DVTMLSALSSCALLGSLDLGKWIHEYIKKY-----G-LDKY-VKVNTALIDMHAKCGRLDDAVSVFDNMSGK-------- 289 (558)
Q Consensus 225 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~-~~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-------- 289 (558)
..+...+...|...|+++.|..+++...+. | ..|. ....+.+...|...+++++|..+|+++...
T Consensus 199 ~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~ 278 (508)
T KOG1840|consen 199 LRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGED 278 (508)
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCC
Confidence 346666888899999999999988887654 2 1222 223345677888999999999988887521
Q ss_pred ---CHHhHHHHHHHHHHCCChHHHHHHHHHHHH-----CCC-CCCH-HHHHHHHHHHHccCChHHHHHHHHHchhhcC--
Q 036003 290 ---DTQAWSAMIVAYATHGQGHKSILMFEEMMK-----AQV-SPDE-ITFLGLLYACSHTGLVDEGWNYFYSMRDKYG-- 357 (558)
Q Consensus 290 ---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~-~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-- 357 (558)
-..+++.|..+|.+.|++++|...+++..+ .|. .|.. .-++.+...|+..+++++|..+++...+.+.
T Consensus 279 h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~ 358 (508)
T KOG1840|consen 279 HPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDA 358 (508)
T ss_pred CHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhh
Confidence 234678888899999999988888877654 122 2232 3566777788999999999999987776433
Q ss_pred CCC----ChhHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 036003 358 IVP----GIKHYGCMVDLLGRAGRLDEAYRFIDEL---------PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFEL 423 (558)
Q Consensus 358 ~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 423 (558)
+.+ -..+++.|...|...|++.+|.+++++. +..+ ....++.|...|.+.+++.+|.++|.+...+
T Consensus 359 ~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i 438 (508)
T KOG1840|consen 359 PGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDI 438 (508)
T ss_pred ccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHH
Confidence 222 2467899999999999999999999886 1112 2356788899999999999999999997643
Q ss_pred ----CCCC---cccHHhHHHHHHhcCChHHHHHHHHHHH
Q 036003 424 ----DDSH---GGDYVILSNLCARAGRWEDVDYLRKLMK 455 (558)
Q Consensus 424 ----~~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 455 (558)
+|.+ ..+|..|+..|.+.|++++|.++.+...
T Consensus 439 ~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 439 MKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred HHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 4444 4568899999999999999999998875
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.4e-10 Score=101.85 Aligned_cols=281 Identities=14% Similarity=0.124 Sum_probs=218.4
Q ss_pred CCChHHHHHHHhccCC---CCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 036003 172 CSDVEAARRIFENISE---PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIH 248 (558)
Q Consensus 172 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 248 (558)
.|++.+|+++..+-.+ .....|..-+.+-.+.|+.+.+-.++.+..+.--.++...+.+........|+.+.|..-.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~~v 176 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARENV 176 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHHHH
Confidence 6999999999988665 2334565666777888999999999999887533455566777778888999999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-----------CHHhHHHHHHHHHHCCChHHHHHHHHHH
Q 036003 249 EYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK-----------DTQAWSAMIVAYATHGQGHKSILMFEEM 317 (558)
Q Consensus 249 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~~~~~~a~~~~~~m 317 (558)
..+.+.+ +.+..+......+|.+.|++.....++..+.+. ...+|+.+++-....+..+.-...|++.
T Consensus 177 ~~ll~~~-pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~~~ 255 (400)
T COG3071 177 DQLLEMT-PRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWKNQ 255 (400)
T ss_pred HHHHHhC-cCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHHhc
Confidence 9998876 556778888999999999999999999999865 2336777777777777777766777776
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHH
Q 036003 318 MKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL--PIKSTPI 395 (558)
Q Consensus 318 ~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~ 395 (558)
... .+-+...-..++.-+.+.|+.++|.++..+..++ +..|.. ...-...+-++...-++..+.. ....++.
T Consensus 256 pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~-~~D~~L----~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~ 329 (400)
T COG3071 256 PRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKR-QWDPRL----CRLIPRLRPGDPEPLIKAAEKWLKQHPEDPL 329 (400)
T ss_pred cHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHh-ccChhH----HHHHhhcCCCCchHHHHHHHHHHHhCCCChh
Confidence 554 4445666677888899999999999999999886 666651 1122344556666555555544 2223457
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 036003 396 LWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVL 460 (558)
Q Consensus 396 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 460 (558)
.+.+|...|.+++.+.+|...|+.+++..|. ..+|..+..+|.+.|+..+|.+..++....-..
T Consensus 330 L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L~~~~~ 393 (400)
T COG3071 330 LLSTLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREALLLTRQ 393 (400)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHHHHhcC
Confidence 8899999999999999999999999988875 588999999999999999999999887644333
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.41 E-value=6e-10 Score=98.95 Aligned_cols=265 Identities=14% Similarity=0.160 Sum_probs=191.9
Q ss_pred CCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhC-CCC--hHHHHHHHHHHHHhCCChH
Q 036003 100 SKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLG-LNS--NLYVCTTLINLYAECSDVE 176 (558)
Q Consensus 100 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g-~~~--~~~~~~~ll~~~~~~g~~~ 176 (558)
+.++++|.++|-+|.+... -+..+-.+|-+.+.+. |.++.|+++++.+.+.. ++- .....-.|..-|.+.|-+|
T Consensus 48 s~Q~dKAvdlF~e~l~~d~-~t~e~~ltLGnLfRsR--GEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~D 124 (389)
T COG2956 48 SNQPDKAVDLFLEMLQEDP-ETFEAHLTLGNLFRSR--GEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLD 124 (389)
T ss_pred hcCcchHHHHHHHHHhcCc-hhhHHHHHHHHHHHhc--chHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhh
Confidence 4578999999999987421 1233344555666666 99999999999888742 111 1234455677899999999
Q ss_pred HHHHHHhccCCCC---cchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhccCChHHHHHHHH
Q 036003 177 AARRIFENISEPC---VVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDV----TMLSALSSCALLGSLDLGKWIHE 249 (558)
Q Consensus 177 ~A~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~ 249 (558)
.|+.+|..+.+.. ..+...|+..|....+|++|+++-+++.+.+-++... .|--+...+....+++.|..++.
T Consensus 125 RAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~~d~A~~~l~ 204 (389)
T COG2956 125 RAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSDVDRARELLK 204 (389)
T ss_pred HHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhhHHHHHHHHH
Confidence 9999999988733 3456778999999999999999999988876444332 23344555566788999999999
Q ss_pred HHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHH----hHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCC
Q 036003 250 YIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQ----AWSAMIVAYATHGQGHKSILMFEEMMKAQVSPD 325 (558)
Q Consensus 250 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 325 (558)
+..+.+ +..+..--.+.+.+...|+++.|.+.++.+.+.|+. +...|..+|.+.|+.++....+.++.+....++
T Consensus 205 kAlqa~-~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL~~~~~~~~g~~ 283 (389)
T COG2956 205 KALQAD-KKCVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFLRRAMETNTGAD 283 (389)
T ss_pred HHHhhC-ccceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHccCCcc
Confidence 988765 334445556788999999999999999999877654 567788999999999999999999988543333
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHh
Q 036003 326 EITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLG 373 (558)
Q Consensus 326 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 373 (558)
.-..+-..-....-.+.|..++.+-.. -.|+...+..|++.-.
T Consensus 284 --~~l~l~~lie~~~G~~~Aq~~l~~Ql~---r~Pt~~gf~rl~~~~l 326 (389)
T COG2956 284 --AELMLADLIELQEGIDAAQAYLTRQLR---RKPTMRGFHRLMDYHL 326 (389)
T ss_pred --HHHHHHHHHHHhhChHHHHHHHHHHHh---hCCcHHHHHHHHHhhh
Confidence 333333333344455666666555543 3699999999988754
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.41 E-value=6.1e-10 Score=111.29 Aligned_cols=99 Identities=19% Similarity=0.146 Sum_probs=78.7
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccC---CCCcccHHhH
Q 036003 363 KHYGCMVDLLGRAGRLDEAYRFIDELP-----IKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD---DSHGGDYVIL 434 (558)
Q Consensus 363 ~~~~~li~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~~l 434 (558)
..|..||+.+......+.|..+.++.. ..-|..-+..+.+...+.+....+..+++++.+.- |....+...+
T Consensus 492 g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~ 571 (1088)
T KOG4318|consen 492 GLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPL 571 (1088)
T ss_pred hHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHH
Confidence 578889999999999999999998883 12244567778888999999999999999987743 3334456677
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCCcc
Q 036003 435 SNLCARAGRWEDVDYLRKLMKDRGVLK 461 (558)
Q Consensus 435 ~~~~~~~g~~~~A~~~~~~m~~~g~~~ 461 (558)
.+.-...|+.+...++++-+...|+.-
T Consensus 572 lns~a~agqqe~Lkkl~d~lvslgl~e 598 (1088)
T KOG4318|consen 572 LNSGAPAGQQEKLKKLADILVSLGLSE 598 (1088)
T ss_pred HhhhhhccCHHHHHHHHHHHHHhhhhh
Confidence 777888999999999999998888765
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.38 E-value=6.2e-09 Score=99.45 Aligned_cols=399 Identities=12% Similarity=0.008 Sum_probs=276.4
Q ss_pred HHHHHhCCCCChhHHHHHHHHhhcCCCCCCHHHHHHHHcc--CCCCCcccHHHHHHHHhcCCCchHHHHHHH----HhHH
Q 036003 42 AVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDR--IPEPDIVLFNTMARGYSRSKTPIRAIFLFV----ELLN 115 (558)
Q Consensus 42 ~~~~~~g~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~--~~~~~~~~~~~li~~~~~~g~~~~A~~~~~----~m~~ 115 (558)
+.....+..|+..- -+..+|.-. ++++.|..+... +...|..+.......+.+..++++|+.++. .+..
T Consensus 40 dkV~~l~~dp~d~~--~~aq~l~~~---~~y~ra~~lit~~~le~~d~~cryL~~~~l~~lk~~~~al~vl~~~~~~~~~ 114 (611)
T KOG1173|consen 40 DKVAGLTNDPADIY--WLAQVLYLG---RQYERAAHLITTYKLEKRDIACRYLAAKCLVKLKEWDQALLVLGRGHVETNP 114 (611)
T ss_pred HHHHhccCChHHHH--HHHHHHHhh---hHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchhhcc
Confidence 33444444444443 456666666 788888887754 456788888888899999999999999988 2211
Q ss_pred C---------CCCCCccc----HHH-----HHH--HHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHH---HHHHh-
Q 036003 116 S---------GLLPDDYS----FPS-----LLK--ACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLI---NLYAE- 171 (558)
Q Consensus 116 ~---------g~~p~~~~----~~~-----ll~--~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll---~~~~~- 171 (558)
- -+.+|..- -+. .++ .+... .+.++|...|.+.+... ...+..+. ....-
T Consensus 115 f~yy~~~~~~~l~~n~~~~~~~~~~essic~lRgk~y~al--~n~~~ar~~Y~~Al~~D----~~c~Ea~~~lvs~~mlt 188 (611)
T KOG1173|consen 115 FSYYEKDAANTLELNSAGEDLMINLESSICYLRGKVYVAL--DNREEARDKYKEALLAD----AKCFEAFEKLVSAHMLT 188 (611)
T ss_pred hhhcchhhhceeccCcccccccccchhceeeeeeehhhhh--ccHHHHHHHHHHHHhcc----hhhHHHHHHHHHHHhcc
Confidence 0 01111111 011 111 12222 56777777777666543 22222221 11100
Q ss_pred ----------------C-CChHHHHHHHhcc----CC----------------CCcchHHHHHHHHHHCCCccHHHHHHH
Q 036003 172 ----------------C-SDVEAARRIFENI----SE----------------PCVVSYNAIITAYARSSRPNEALSLFR 214 (558)
Q Consensus 172 ----------------~-g~~~~A~~~~~~~----~~----------------~~~~~~~~li~~~~~~g~~~~A~~~~~ 214 (558)
. .+.+.-+.+|+.. .. .++...-....-+...+++.+..++++
T Consensus 189 ~~Ee~~ll~~l~~a~~~~ed~e~l~~lyel~~~k~~n~~~~~r~~~~sl~~l~~~~dll~~~ad~~y~~c~f~~c~kit~ 268 (611)
T KOG1173|consen 189 AQEEFELLESLDLAMLTKEDVERLEILYELKLCKNRNEESLTRNEDESLIGLAENLDLLAEKADRLYYGCRFKECLKITE 268 (611)
T ss_pred hhHHHHHHhcccHHhhhhhHHHHHHHHHHhhhhhhccccccccCchhhhhhhhhcHHHHHHHHHHHHHcChHHHHHHHhH
Confidence 0 1112222223211 00 222333344455677889999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCC---H
Q 036003 215 ELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKD---T 291 (558)
Q Consensus 215 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~ 291 (558)
...+.. ++....+..-|.++...|+..+-..+-..+.+. .|....+|-++.--|.-.|+..+|++.|.+...-| .
T Consensus 269 ~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fg 346 (611)
T KOG1173|consen 269 ELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFG 346 (611)
T ss_pred HHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCcccc
Confidence 987763 556666666677888888887777777777765 35667788888888888999999999999876443 4
Q ss_pred HhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHH
Q 036003 292 QAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDL 371 (558)
Q Consensus 292 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 371 (558)
..|-.+...|+-.|..++|+..+...-+. ++-....+--+.--|.+.++.+.|.++|.+... -.+.|+...+-+.-.
T Consensus 347 paWl~fghsfa~e~EhdQAmaaY~tAarl-~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~a--i~P~Dplv~~Elgvv 423 (611)
T KOG1173|consen 347 PAWLAFGHSFAGEGEHDQAMAAYFTAARL-MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQALA--IAPSDPLVLHELGVV 423 (611)
T ss_pred HHHHHHhHHhhhcchHHHHHHHHHHHHHh-ccCCcchHHHHHHHHHHhccHHHHHHHHHHHHh--cCCCcchhhhhhhhe
Confidence 57999999999999999999999887763 121222334455567889999999999999874 334467778888877
Q ss_pred HhhcCCHHHHHHHHHhCC--------CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcC
Q 036003 372 LGRAGRLDEAYRFIDELP--------IKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAG 442 (558)
Q Consensus 372 ~~~~g~~~~A~~~~~~~~--------~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 442 (558)
....+.+.+|..+|+... ..+ -..+++.|..+|.+.+.+++|+..+++++.+.|.++.+|.+++-+|...|
T Consensus 424 ay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llg 503 (611)
T KOG1173|consen 424 AYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLG 503 (611)
T ss_pred eehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhc
Confidence 788899999999998751 111 23578899999999999999999999999999999999999999999999
Q ss_pred ChHHHHHHHHHHHh
Q 036003 443 RWEDVDYLRKLMKD 456 (558)
Q Consensus 443 ~~~~A~~~~~~m~~ 456 (558)
+++.|.+.|.+...
T Consensus 504 nld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 504 NLDKAIDHFHKALA 517 (611)
T ss_pred ChHHHHHHHHHHHh
Confidence 99999999988754
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.37 E-value=1.9e-10 Score=105.25 Aligned_cols=196 Identities=13% Similarity=0.077 Sum_probs=148.4
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036003 260 VKVNTALIDMHAKCGRLDDAVSVFDNMSG---KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336 (558)
Q Consensus 260 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 336 (558)
...+..+...|...|++++|.+.+++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...+
T Consensus 31 ~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~ 109 (234)
T TIGR02521 31 AKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTFL 109 (234)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHH
Confidence 44555566777777777777777776542 245667777778888888888888888887753 22456667777788
Q ss_pred HccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 036003 337 SHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAK 414 (558)
Q Consensus 337 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~ 414 (558)
...|++++|.+.+++.............+..+...+...|++++|.+.+++. ...| +...+..+...+...|++++|.
T Consensus 110 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 189 (234)
T TIGR02521 110 CQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDAR 189 (234)
T ss_pred HHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHHH
Confidence 8888888888888888763222234456777788888999999999998886 3233 4567888888899999999999
Q ss_pred HHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 415 QVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
..++++.+..|.++..+..++..+...|+.++|..+.+.+..
T Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 190 AYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 999999888777777888888889999999999998887754
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.36 E-value=3.1e-11 Score=120.26 Aligned_cols=264 Identities=12% Similarity=0.154 Sum_probs=195.2
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCC
Q 036003 211 SLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKD 290 (558)
Q Consensus 211 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 290 (558)
.++..+...|+.|+.+||..+|.-||..|+.+.|- +|..|.-...+.+..+++.++......++.+.+. ++.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 46778888999999999999999999999999999 9999998888999999999999999999877665 678
Q ss_pred HHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHH
Q 036003 291 TQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVD 370 (558)
Q Consensus 291 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 370 (558)
..+|..|..+|..+||... ++..++ -.-.+...++..|....-..++..+.-..+..||.. ..+.
T Consensus 83 aDtyt~Ll~ayr~hGDli~-fe~veq-----------dLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~---n~il 147 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLIL-FEVVEQ-----------DLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAE---NAIL 147 (1088)
T ss_pred hhHHHHHHHHHHhccchHH-HHHHHH-----------HHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHH---HHHH
Confidence 8899999999999999766 222222 233455566777776666677766543334555544 3556
Q ss_pred HHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc-CCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHH
Q 036003 371 LLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSH-NNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDY 449 (558)
Q Consensus 371 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 449 (558)
...-.|-++.+++++..+|...-...+...++-+... ..+++-....+...+ .+++.+|..++.+-..+|+.+-|..
T Consensus 148 llv~eglwaqllkll~~~Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e--~~~s~~l~a~l~~alaag~~d~Ak~ 225 (1088)
T KOG4318|consen 148 LLVLEGLWAQLLKLLAKVPVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVE--APTSETLHAVLKRALAAGDVDGAKN 225 (1088)
T ss_pred HHHHHHHHHHHHHHHhhCCcccccchHHHHHHHhccCCchHHHHHHHHHHhhc--CCChHHHHHHHHHHHhcCchhhHHH
Confidence 6667788899999998885332111111123333322 223333333333333 4667899999999999999999999
Q ss_pred HHHHHHhCCCccCCcccEEEECCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHcCcccCCCCcc
Q 036003 450 LRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVH 514 (558)
Q Consensus 450 ~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~pd~~~~~ 514 (558)
++..|+++|+.-++...|.++-+ . +....++.+.+-|++.|+.|+.++.-
T Consensus 226 ll~emke~gfpir~HyFwpLl~g--------~-------~~~q~~e~vlrgmqe~gv~p~seT~a 275 (1088)
T KOG4318|consen 226 LLYEMKEKGFPIRAHYFWPLLLG--------I-------NAAQVFEFVLRGMQEKGVQPGSETQA 275 (1088)
T ss_pred HHHHHHHcCCCcccccchhhhhc--------C-------ccchHHHHHHHHHHHhcCCCCcchhH
Confidence 99999999999999988986543 1 22345667889999999999987654
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.36 E-value=7.5e-09 Score=102.46 Aligned_cols=397 Identities=16% Similarity=0.067 Sum_probs=269.0
Q ss_pred hCCCCChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCC---CCcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcc
Q 036003 47 THLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE---PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDY 123 (558)
Q Consensus 47 ~g~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 123 (558)
..+..+...|..|.-+..++ |+++.+.+.|++... .....|+.+...|...|.-..|+.+++.-....-.|+..
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~---g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~ 393 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRC---GQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDI 393 (799)
T ss_pred hhhcchHHHHHHHHHHHHHH---HHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcc
Confidence 34668899999999999999 999999999998764 345679999999999999999999998876543335444
Q ss_pred c-HHHHHHHHHhcCcccHHHHHHHHHHHHHh--CC--CChHHHHHHHHHHHHhC-----------CChHHHHHHHhccCC
Q 036003 124 S-FPSLLKACACVGAEALEEGKQLHCFAIKL--GL--NSNLYVCTTLINLYAEC-----------SDVEAARRIFENISE 187 (558)
Q Consensus 124 ~-~~~ll~~~~~~~~~~~~~a~~~~~~~~~~--g~--~~~~~~~~~ll~~~~~~-----------g~~~~A~~~~~~~~~ 187 (558)
+ +-..-+.|.... +.+++++.+..+++.. +. ......|..+.-+|... ....++.+.+++..+
T Consensus 394 s~~Lmasklc~e~l-~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~ 472 (799)
T KOG4162|consen 394 SVLLMASKLCIERL-KLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQ 472 (799)
T ss_pred hHHHHHHHHHHhch-hhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHh
Confidence 4 444444455443 7888888888887773 21 12234454455444332 123566777777754
Q ss_pred ---CCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh-CCCCchhHH
Q 036003 188 ---PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY-GLDKYVKVN 263 (558)
Q Consensus 188 ---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~ 263 (558)
.|......+.--|+..++.+.|++...+..+.+-.-+...|..+.-.+...+++.+|+.+.+..... |.... ..
T Consensus 473 ~d~~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~--l~ 550 (799)
T KOG4162|consen 473 FDPTDPLVIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHV--LM 550 (799)
T ss_pred cCCCCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhh--hc
Confidence 2333323344457778899999999999998866778888988888899999999999988876542 21110 00
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccC------------------------------CC-C-HHhHHHHHHHHHHCC---ChH
Q 036003 264 TALIDMHAKCGRLDDAVSVFDNMS------------------------------GK-D-TQAWSAMIVAYATHG---QGH 308 (558)
Q Consensus 264 ~~l~~~~~~~g~~~~A~~~~~~~~------------------------------~~-~-~~~~~~li~~~~~~~---~~~ 308 (558)
..-+..-..-++.++|......+. ++ + ..++..+..-....+ ..+
T Consensus 551 ~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se 630 (799)
T KOG4162|consen 551 DGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSE 630 (799)
T ss_pred hhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccc
Confidence 011111222344444443332221 00 1 111211111111100 001
Q ss_pred HHHHHHHHHHHCCCC--CCH------HHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHH
Q 036003 309 KSILMFEEMMKAQVS--PDE------ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDE 380 (558)
Q Consensus 309 ~a~~~~~~m~~~g~~--p~~------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 380 (558)
.. |...-+. |+. ..+......+.+.+..++|...+.+... ..+.....|......+...|..++
T Consensus 631 ~~------Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~E 702 (799)
T KOG4162|consen 631 LK------LPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEE 702 (799)
T ss_pred cc------cCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHH
Confidence 00 1111112 221 2344555677888999999999998875 445567788888889999999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHH--HHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 381 AYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQ--VIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 381 A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~--~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
|.+.|... ...| ++.+..++...+.+.|+..-|.. ++..+++.+|.++.+|..++.++.+.|+.++|.+.|+...+
T Consensus 703 A~~af~~Al~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~q 782 (799)
T KOG4162|consen 703 AKEAFLVALALDPDHVPSMTALAELLLELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQ 782 (799)
T ss_pred HHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHh
Confidence 99999886 5556 46788999999999999888888 99999999999999999999999999999999999998765
Q ss_pred C
Q 036003 457 R 457 (558)
Q Consensus 457 ~ 457 (558)
.
T Consensus 783 L 783 (799)
T KOG4162|consen 783 L 783 (799)
T ss_pred h
Confidence 3
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.33 E-value=4e-09 Score=98.87 Aligned_cols=218 Identities=11% Similarity=0.017 Sum_probs=174.0
Q ss_pred HHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 036003 200 YARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDA 279 (558)
Q Consensus 200 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 279 (558)
+.-.|+...|.+.|+..++....++ ..|..+...|....+.++..+.|....+.+ +.+..+|..-..++.-.+++++|
T Consensus 336 ~fL~g~~~~a~~d~~~~I~l~~~~~-~lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A 413 (606)
T KOG0547|consen 336 HFLKGDSLGAQEDFDAAIKLDPAFN-SLYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEA 413 (606)
T ss_pred hhhcCCchhhhhhHHHHHhcCcccc-hHHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHH
Confidence 4456899999999999988643333 238888888999999999999999999876 45667777788888888999999
Q ss_pred HHHHhccCCC---CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhc
Q 036003 280 VSVFDNMSGK---DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKY 356 (558)
Q Consensus 280 ~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 356 (558)
..-|++..+- ++..|-.+..+..+.+++++++..|++.+++ ++--...|+.....+...++++.|.+.|+...+
T Consensus 414 ~aDF~Kai~L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~-- 490 (606)
T KOG0547|consen 414 IADFQKAISLDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIE-- 490 (606)
T ss_pred HHHHHHHhhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHh--
Confidence 9999988754 5566777777888899999999999999886 554567899999999999999999999998874
Q ss_pred CCCCC---------hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHccC
Q 036003 357 GIVPG---------IKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKST-PILWRTLLSSCSSHNNLGLAKQVIERIFELD 424 (558)
Q Consensus 357 ~~~~~---------~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 424 (558)
+.|. +.+.-+++..- -.+++..|..++.+. .+.|. ...|.+|...-.+.|+.++|+++|++...+-
T Consensus 491 -LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~~tlaq~~lQ~~~i~eAielFEksa~lA 567 (606)
T KOG0547|consen 491 -LEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAYETLAQFELQRGKIDEAIELFEKSAQLA 567 (606)
T ss_pred -hccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHH
Confidence 2333 12222233222 348999999999997 55553 5788999999999999999999999987654
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.7e-08 Score=92.73 Aligned_cols=303 Identities=10% Similarity=-0.021 Sum_probs=187.2
Q ss_pred CCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHh-CCCChHHHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHH---H
Q 036003 120 PDDYSFPSLLKACACVGAEALEEGKQLHCFAIKL-GLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYN---A 195 (558)
Q Consensus 120 p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~-g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~---~ 195 (558)
|...+...-+.+++..-.++-..+.+.+-.+... -++-|......+.+++...|+.++|+..|++....|..+.. .
T Consensus 192 ~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~ 271 (564)
T KOG1174|consen 192 DHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDL 271 (564)
T ss_pred CCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHH
Confidence 3333444444444332113334444444333332 24556677777888888888888888888877654433322 2
Q ss_pred HHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 036003 196 IITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGR 275 (558)
Q Consensus 196 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 275 (558)
....+.+.|+.+....+...+.... .-+...|..-+...-..++++.|..+-++.++.+ +.+...+-.-..++...|+
T Consensus 272 Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~~~~R 349 (564)
T KOG1174|consen 272 YAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLIALER 349 (564)
T ss_pred HHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHHhccc
Confidence 2334556777777777776665431 1222233333333345567777777777666654 3344455445566777788
Q ss_pred HHHHHHHHhccC--C-CCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHH-HHHH-ccCChHHHHHHHH
Q 036003 276 LDDAVSVFDNMS--G-KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLL-YACS-HTGLVDEGWNYFY 350 (558)
Q Consensus 276 ~~~A~~~~~~~~--~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll-~~~~-~~g~~~~a~~~~~ 350 (558)
.++|.-.|+... . -+..+|.-|+.+|...|++.+|..+-+...+. +.-+..+...+. ..|. ...--++|..+++
T Consensus 350 ~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~e 428 (564)
T KOG1174|consen 350 HTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAKKFAE 428 (564)
T ss_pred hHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHHHHHH
Confidence 888877777654 3 26777888888888888888887777665543 333455554442 2222 2233466777777
Q ss_pred HchhhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCc
Q 036003 351 SMRDKYGIVPG-IKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHG 428 (558)
Q Consensus 351 ~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 428 (558)
+-. .+.|+ ....+.+...+...|+.++++.++++. ...||....+.|.+.+...+.+++|...|..++.++|.+.
T Consensus 429 k~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~dP~~~ 505 (564)
T KOG1174|consen 429 KSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQDPKSK 505 (564)
T ss_pred hhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCccch
Confidence 665 34454 445566677777888888888888776 5567888888888888888888888888888888888763
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.29 E-value=4.5e-12 Score=83.66 Aligned_cols=50 Identities=32% Similarity=0.628 Sum_probs=43.5
Q ss_pred CCcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHh
Q 036003 85 PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134 (558)
Q Consensus 85 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 134 (558)
||+.+||.+|++|++.|++++|+++|++|.+.|++||..||+++|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68888888888888888888888888888888888888888888888863
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=2.6e-10 Score=101.24 Aligned_cols=227 Identities=15% Similarity=0.143 Sum_probs=157.6
Q ss_pred HHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 036003 194 NAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKC 273 (558)
Q Consensus 194 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 273 (558)
+.+..+|.+.|.+.+|.+.|+.-.+. .|-..||..|-.+|.+..+.+.|..++.+-.+. ++-++.....+.+.+-..
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~-fP~~VT~l~g~ARi~eam 303 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS-FPFDVTYLLGQARIHEAM 303 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc-CCchhhhhhhhHHHHHHH
Confidence 56778888888888888888877765 567778888888888888888888888877664 244444444455556666
Q ss_pred CCHHHHHHHHhccCCC---CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 036003 274 GRLDDAVSVFDNMSGK---DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFY 350 (558)
Q Consensus 274 g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 350 (558)
++.++|.++|+...+. ++.+...+...|.-.++++-|+..|+++.+.|+. +...|+.+.-+|.-.+++|-++..|+
T Consensus 304 ~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~ 382 (478)
T KOG1129|consen 304 EQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQ 382 (478)
T ss_pred HhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHH
Confidence 6666666666655432 4444444555555555566666666666555544 44455555555555555555555444
Q ss_pred HchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCc
Q 036003 351 SMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKST--PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHG 428 (558)
Q Consensus 351 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 428 (558)
+.... ...|+ ..+|..+.......|++..|.+.|+-++..++++.
T Consensus 383 RAlst---------------------------------at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~h~ 429 (478)
T KOG1129|consen 383 RALST---------------------------------ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQHG 429 (478)
T ss_pred HHHhh---------------------------------ccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcchH
Confidence 44331 11232 35677777778888999999999999999999999
Q ss_pred ccHHhHHHHHHhcCChHHHHHHHHHHHhC
Q 036003 429 GDYVILSNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 429 ~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
.+++.|...-.+.|++++|..+++.....
T Consensus 430 ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 430 EALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 99999999999999999999999987664
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.28 E-value=3.5e-09 Score=109.11 Aligned_cols=262 Identities=11% Similarity=0.027 Sum_probs=183.2
Q ss_pred CcchHHHHHHHHHH--C---CCccHHHHHHHHHHHCCCCCC-HHHHHHHHHHHh---------ccCChHHHHHHHHHHHH
Q 036003 189 CVVSYNAIITAYAR--S---SRPNEALSLFRELQERNLKPT-DVTMLSALSSCA---------LLGSLDLGKWIHEYIKK 253 (558)
Q Consensus 189 ~~~~~~~li~~~~~--~---g~~~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~---------~~~~~~~a~~~~~~~~~ 253 (558)
+...|...+.+... . +..++|.+.|++..+. .|+ ...|..+..++. ..+++++|...++++.+
T Consensus 255 ~~da~~~~lrg~~~~~~~~~~~~~~A~~~~~~Al~l--dP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ 332 (553)
T PRK12370 255 SIDSTMVYLRGKHELNQYTPYSLQQALKLLTQCVNM--SPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATE 332 (553)
T ss_pred ChHHHHHHHHhHHHHHccCHHHHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHh
Confidence 44455555555322 1 3457899999988875 454 344554444433 23457899999999988
Q ss_pred hCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC---CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCH-HHH
Q 036003 254 YGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK---DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDE-ITF 329 (558)
Q Consensus 254 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~ 329 (558)
.+ +.+...+..+..++...|++++|...|++..+. +...|..+...+...|++++|+..+++..+. .|+. ..+
T Consensus 333 ld-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l--~P~~~~~~ 409 (553)
T PRK12370 333 LD-HNNPQALGLLGLINTIHSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLKL--DPTRAAAG 409 (553)
T ss_pred cC-CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCChhhH
Confidence 75 446777888888999999999999999987633 5667888999999999999999999999985 4543 233
Q ss_pred HHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhc
Q 036003 330 LGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKSTP-ILWRTLLSSCSSH 407 (558)
Q Consensus 330 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~-~~~~~l~~~~~~~ 407 (558)
..++..+...|++++|...++++... ..+.+...+..+..++...|++++|...+.++ +..|+. ...+.+...|...
T Consensus 410 ~~~~~~~~~~g~~eeA~~~~~~~l~~-~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 488 (553)
T PRK12370 410 ITKLWITYYHTGIDDAIRLGDELRSQ-HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQN 488 (553)
T ss_pred HHHHHHHHhccCHHHHHHHHHHHHHh-ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhcc
Confidence 34444566789999999999998763 22224556778888999999999999999987 444543 4455566667777
Q ss_pred CCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhCCC
Q 036003 408 NNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGV 459 (558)
Q Consensus 408 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 459 (558)
| ++|...++++.+.....+..+..+...|.-.|+-+.+... +++.+.|-
T Consensus 489 g--~~a~~~l~~ll~~~~~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 489 S--ERALPTIREFLESEQRIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred H--HHHHHHHHHHHHHhhHhhcCchHHHHHHHHHhhhHHHHHH-HHhhccch
Confidence 7 4788888887664422222222355566667776666665 87776543
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.26 E-value=1.3e-11 Score=81.42 Aligned_cols=50 Identities=34% Similarity=0.629 Sum_probs=44.8
Q ss_pred CCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc
Q 036003 188 PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCAL 237 (558)
Q Consensus 188 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 237 (558)
||+.+||++|.+|++.|++++|.++|++|.+.|++||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 68889999999999999999999999999999999999999999988874
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.25 E-value=3.4e-09 Score=96.83 Aligned_cols=198 Identities=10% Similarity=0.070 Sum_probs=103.7
Q ss_pred chHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 036003 191 VSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMH 270 (558)
Q Consensus 191 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 270 (558)
..+..+...+...|++++|.+.+++..+.. +.+...+..+...+...|++++|...+++..+.. +.
T Consensus 32 ~~~~~la~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~------------ 97 (234)
T TIGR02521 32 KIRVQLALGYLEQGDLEVAKENLDKALEHD-PDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PN------------ 97 (234)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CC------------
Confidence 345555555566666666666665555432 2233444444455555555555555555554432 11
Q ss_pred HhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHH
Q 036003 271 AKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP-DEITFLGLLYACSHTGLVDEGWNYF 349 (558)
Q Consensus 271 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~ 349 (558)
+...+..+...+...|++++|...+++.......+ ....+..+..++...|++++|...+
T Consensus 98 -------------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (234)
T TIGR02521 98 -------------------NGDVLNNYGTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYL 158 (234)
T ss_pred -------------------CHHHHHHHHHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 23334444455555555555555555555422111 2234444555566666666666666
Q ss_pred HHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 036003 350 YSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PI-KSTPILWRTLLSSCSSHNNLGLAKQVIERIFEL 423 (558)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 423 (558)
.+.... .+.+...+..+...+...|++++|...+++. .. ..+...+..+...+...|+.++|..+.+.+...
T Consensus 159 ~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 232 (234)
T TIGR02521 159 TRALQI--DPQRPESLLELAELYYLRGQYKDARAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQKL 232 (234)
T ss_pred HHHHHh--CcCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 666542 2223445556666666666666666666654 11 223445555556666666777766666655443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.22 E-value=1.3e-08 Score=97.22 Aligned_cols=276 Identities=11% Similarity=0.056 Sum_probs=214.4
Q ss_pred CChHHHHHHHHHHHHhCCChHHHHHHHhccCC---CCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036003 156 NSNLYVCTTLINLYAECSDVEAARRIFENISE---PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSAL 232 (558)
Q Consensus 156 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 232 (558)
..+........+-+...+++.+..++++.+.+ .....+..-|.++...|+..+-..+=.+|.+. .+-...+|-++.
T Consensus 241 ~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~-yP~~a~sW~aVg 319 (611)
T KOG1173|consen 241 AENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL-YPSKALSWFAVG 319 (611)
T ss_pred hhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh-CCCCCcchhhHH
Confidence 44555666666778889999999999999877 44556667778899999998888888888876 355677898998
Q ss_pred HHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC---CHHhHHHHHHHHHHCCChHH
Q 036003 233 SSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK---DTQAWSAMIVAYATHGQGHK 309 (558)
Q Consensus 233 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~ 309 (558)
--|...|+.++|+++|.+....+ +.-...|-.+...|.-.|..|+|...|....+- ....+--+.--|.+.+....
T Consensus 320 ~YYl~i~k~seARry~SKat~lD-~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LYlgmey~~t~n~kL 398 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLD-PTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLYLGMEYMRTNNLKL 398 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcC-ccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHHHHHHHHHhccHHH
Confidence 88889999999999999887654 223566778899999999999999888765422 22233445667888999999
Q ss_pred HHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHchhhc-CCC----CChhHHHHHHHHHhhcCCHHHHHH
Q 036003 310 SILMFEEMMKAQVSP-DEITFLGLLYACSHTGLVDEGWNYFYSMRDKY-GIV----PGIKHYGCMVDLLGRAGRLDEAYR 383 (558)
Q Consensus 310 a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~----~~~~~~~~li~~~~~~g~~~~A~~ 383 (558)
|.+.|.+... +-| |+..++-+.-.....+.+.+|..+|+.....- .+. ....+++.|..+|.+.+.+++|+.
T Consensus 399 Ae~Ff~~A~a--i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~ 476 (611)
T KOG1173|consen 399 AEKFFKQALA--IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAID 476 (611)
T ss_pred HHHHHHHHHh--cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHH
Confidence 9999999887 555 44566666655666889999999998877310 111 134568889999999999999999
Q ss_pred HHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHH
Q 036003 384 FIDEL--PIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILS 435 (558)
Q Consensus 384 ~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 435 (558)
.+++. ..+.+..++.++.-.|...|+++.|...|.+++.+.|++..+-..|.
T Consensus 477 ~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~ 530 (611)
T KOG1173|consen 477 YYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLK 530 (611)
T ss_pred HHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 99987 33457889999999999999999999999999999999865544444
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=99.22 E-value=5.7e-08 Score=87.24 Aligned_cols=295 Identities=12% Similarity=0.080 Sum_probs=209.3
Q ss_pred hHHHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHH---HHHHHCCCccHHHHHHHHHHHCCCCCCHHHHH-HHHH
Q 036003 158 NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAII---TAYARSSRPNEALSLFRELQERNLKPTDVTML-SALS 233 (558)
Q Consensus 158 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li---~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~-~ll~ 233 (558)
+..-.--|.+.+...|++..|+.-|....+-|+..|.++. ..|...|+...|+.-+.+.++. +||-..-. .-..
T Consensus 37 dvekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~ 114 (504)
T KOG0624|consen 37 DVEKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGV 114 (504)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhch
Confidence 3344445667777788999999999998887777777665 4688889999999888888874 67754322 2234
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCc--hhHH------------HHHHHHHHhcCCHHHHHHHHhccCCC---CHHhHHH
Q 036003 234 SCALLGSLDLGKWIHEYIKKYGLDKY--VKVN------------TALIDMHAKCGRLDDAVSVFDNMSGK---DTQAWSA 296 (558)
Q Consensus 234 ~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~------------~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ 296 (558)
.+.+.|.+++|..=|+.+.++....+ ...+ ...+..+...|+...|++....+.+. |...|..
T Consensus 115 vllK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~ 194 (504)
T KOG0624|consen 115 VLLKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQPWDASLRQA 194 (504)
T ss_pred hhhhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcCcchhHHHHH
Confidence 56788999999999988887653111 1111 12244456678888888888877643 7788888
Q ss_pred HHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhH----HHHH----
Q 036003 297 MIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKH----YGCM---- 368 (558)
Q Consensus 297 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~----~~~l---- 368 (558)
-..+|...|++..|+.-++...+..- -+..++--+-..+...|+.+.++...++.. .+.||... |-.|
T Consensus 195 Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~~sL~~iRECL---KldpdHK~Cf~~YKklkKv~ 270 (504)
T KOG0624|consen 195 RAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAENSLKEIRECL---KLDPDHKLCFPFYKKLKKVV 270 (504)
T ss_pred HHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHHHHHHHHHHHH---ccCcchhhHHHHHHHHHHHH
Confidence 88999999999999888887766432 234455555666777888888877777665 45565432 2111
Q ss_pred -----HHHHhhcCCHHHHHHHHHhC-CCCCCH-----HHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHH
Q 036003 369 -----VDLLGRAGRLDEAYRFIDEL-PIKSTP-----ILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNL 437 (558)
Q Consensus 369 -----i~~~~~~g~~~~A~~~~~~~-~~~~~~-----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 437 (558)
+....+.+++.++.+-.+.. ...|.. ..+..+-.++...+++.+|++...++++.+|++..++.--..+
T Consensus 271 K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~dRAeA 350 (504)
T KOG0624|consen 271 KSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLCDRAEA 350 (504)
T ss_pred HHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHHHHHHH
Confidence 11234556777776666654 444542 2445566777888999999999999999999999999999999
Q ss_pred HHhcCChHHHHHHHHHHHhCC
Q 036003 438 CARAGRWEDVDYLRKLMKDRG 458 (558)
Q Consensus 438 ~~~~g~~~~A~~~~~~m~~~g 458 (558)
|.-...|++|+.-|++..+.+
T Consensus 351 ~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 351 YLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred HhhhHHHHHHHHHHHHHHhcC
Confidence 998889999999998887643
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.21 E-value=2.9e-09 Score=109.66 Aligned_cols=241 Identities=11% Similarity=0.030 Sum_probs=146.7
Q ss_pred ChHHHHHHHhccCC--CC-cchHHHHHHHHH---------HCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh
Q 036003 174 DVEAARRIFENISE--PC-VVSYNAIITAYA---------RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSL 241 (558)
Q Consensus 174 ~~~~A~~~~~~~~~--~~-~~~~~~li~~~~---------~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 241 (558)
++++|...|++..+ |+ ...|..+..+|. ..+++++|...+++..+.+ +-+...+..+...+...|++
T Consensus 276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCH
Confidence 34566666666655 22 233444443333 2234677888887777653 33555666666777777888
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC---CHHhHHHHHHHHHHCCChHHHHHHHHHHH
Q 036003 242 DLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK---DTQAWSAMIVAYATHGQGHKSILMFEEMM 318 (558)
Q Consensus 242 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 318 (558)
++|...++++.+.+ +.+...+..+..++...|++++|...+++..+. +...+..++..+...|++++|...+++..
T Consensus 355 ~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l 433 (553)
T PRK12370 355 IVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELR 433 (553)
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHH
Confidence 88888888877765 334556666777788888888888888876543 22233344445666788888888888877
Q ss_pred HCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC
Q 036003 319 KAQVSP-DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL----PIKST 393 (558)
Q Consensus 319 ~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~ 393 (558)
+.. .| +...+..+..++...|++++|...+.++.. ..+.+....+.+...|...| ++|...++.+ ...+.
T Consensus 434 ~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~ 508 (553)
T PRK12370 434 SQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEIST--QEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDN 508 (553)
T ss_pred Hhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhh--ccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhc
Confidence 643 23 334456666777788888888888887654 22223344455556666666 4666655554 22222
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHccC
Q 036003 394 PILWRTLLSSCSSHNNLGLAKQVIERIFELD 424 (558)
Q Consensus 394 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 424 (558)
...+ +-..+.-.|+-+.+..+ +++.+.+
T Consensus 509 ~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~ 536 (553)
T PRK12370 509 NPGL--LPLVLVAHGEAIAEKMW-NKFKNED 536 (553)
T ss_pred CchH--HHHHHHHHhhhHHHHHH-HHhhccc
Confidence 2223 33334455666666555 6666554
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.16 E-value=7.4e-09 Score=101.80 Aligned_cols=231 Identities=13% Similarity=0.109 Sum_probs=166.4
Q ss_pred hHHHHHHHHHHCCCccHHHHHHHHHHHC-----C-CCCCHHH-HHHHHHHHhccCChHHHHHHHHHHHHh-----C--CC
Q 036003 192 SYNAIITAYARSSRPNEALSLFRELQER-----N-LKPTDVT-MLSALSSCALLGSLDLGKWIHEYIKKY-----G--LD 257 (558)
Q Consensus 192 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-----~-~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~-----~--~~ 257 (558)
+...+...|...|++++|..+++...+. | ..|...+ .+.+...|...+++++|..+|+++... | .+
T Consensus 201 ~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~ 280 (508)
T KOG1840|consen 201 TLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHP 280 (508)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCH
Confidence 3344777788888888888777766543 1 1233333 333666778888888888888887643 2 11
Q ss_pred CchhHHHHHHHHHHhcCCHHHHHHHHhccCC----------CCH-HhHHHHHHHHHHCCChHHHHHHHHHHHHC---CCC
Q 036003 258 KYVKVNTALIDMHAKCGRLDDAVSVFDNMSG----------KDT-QAWSAMIVAYATHGQGHKSILMFEEMMKA---QVS 323 (558)
Q Consensus 258 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~ 323 (558)
.-..+++.|..+|.+.|++++|...+++..+ +.+ ..++.++..++..+++++|..+++...+. -+.
T Consensus 281 ~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g 360 (508)
T KOG1840|consen 281 AVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPG 360 (508)
T ss_pred HHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhcc
Confidence 2245566677788889998888877776531 122 23677888899999999999999876542 122
Q ss_pred CC----HHHHHHHHHHHHccCChHHHHHHHHHchhhc----C-CCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-----
Q 036003 324 PD----EITFLGLLYACSHTGLVDEGWNYFYSMRDKY----G-IVP-GIKHYGCMVDLLGRAGRLDEAYRFIDEL----- 388 (558)
Q Consensus 324 p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~-~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~----- 388 (558)
++ ..+++.|...|...|++++|.++++++.... + ..+ ....++.|...|.+.+++.+|.++|.+.
T Consensus 361 ~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~ 440 (508)
T KOG1840|consen 361 EDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMK 440 (508)
T ss_pred ccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHH
Confidence 22 2678899999999999999999999888653 1 112 2456788899999999999999998875
Q ss_pred ---CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 036003 389 ---PIKSTP-ILWRTLLSSCSSHNNLGLAKQVIERIFE 422 (558)
Q Consensus 389 ---~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 422 (558)
+..|+. .+|..|...|...|+++.|+++.+.+..
T Consensus 441 ~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 441 LCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 334544 6899999999999999999999998863
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.14 E-value=2.1e-09 Score=95.58 Aligned_cols=229 Identities=12% Similarity=0.098 Sum_probs=187.1
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHhccCC--CCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHH-HHHHHHHh
Q 036003 160 YVCTTLINLYAECSDVEAARRIFENISE--PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTM-LSALSSCA 236 (558)
Q Consensus 160 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~-~~ll~~~~ 236 (558)
.--+-+.++|.+.|.+.+|++.|+...+ +-+.||-.|...|.+..++..|+.+|.+-.+. -|-.+|| ..+.+.+.
T Consensus 224 wWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ARi~e 301 (478)
T KOG1129|consen 224 WWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQARIHE 301 (478)
T ss_pred HHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhhHHHHH
Confidence 3346788999999999999999988764 78889999999999999999999999988774 5655555 45667888
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHHhHHHHHHHHHHCCChHHHHHH
Q 036003 237 LLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSG---KDTQAWSAMIVAYATHGQGHKSILM 313 (558)
Q Consensus 237 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~ 313 (558)
..++.+.|.++++.+.+.. +.++.....+...|.-.++.+.|+++|+++.+ .++..|+.+.-+|.-.+++|-++..
T Consensus 302 am~~~~~a~~lYk~vlk~~-~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~speLf~NigLCC~yaqQ~D~~L~s 380 (478)
T KOG1129|consen 302 AMEQQEDALQLYKLVLKLH-PINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQSPELFCNIGLCCLYAQQIDLVLPS 380 (478)
T ss_pred HHHhHHHHHHHHHHHHhcC-CccceeeeeeeeccccCCChHHHHHHHHHHHHhcCCChHHHhhHHHHHHhhcchhhhHHH
Confidence 8999999999999998864 45666667778888999999999999998875 4788899999999999999999999
Q ss_pred HHHHHHCCCCCCH--HHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 036003 314 FEEMMKAQVSPDE--ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PI 390 (558)
Q Consensus 314 ~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 390 (558)
|++....--.|+. ..|..|-......|++..|.+.|+.... .-..+...++.|.-.-.+.|+++.|..+++.. ..
T Consensus 381 f~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~--~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 381 FQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT--SDAQHGEALNNLAVLAARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc--cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhh
Confidence 9998875444554 4566666667788999999999998875 44456778888888888999999999988877 33
Q ss_pred CCC
Q 036003 391 KST 393 (558)
Q Consensus 391 ~~~ 393 (558)
.|+
T Consensus 459 ~P~ 461 (478)
T KOG1129|consen 459 MPD 461 (478)
T ss_pred Ccc
Confidence 444
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.13 E-value=6.6e-07 Score=82.57 Aligned_cols=262 Identities=8% Similarity=-0.026 Sum_probs=192.7
Q ss_pred CCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHH-HHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 036003 188 PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVT-MLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTAL 266 (558)
Q Consensus 188 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 266 (558)
.|+.....+...+...|+.++|+..|++.... .|+..+ ...-.-.+.+.|+.+....+...+.... ......|-.-
T Consensus 230 ~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~--dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf~~~-~~ta~~wfV~ 306 (564)
T KOG1174|consen 230 CNEHLMMALGKCLYYNGDYFQAEDIFSSTLCA--NPDNVEAMDLYAVLLGQEGGCEQDSALMDYLFAKV-KYTASHWFVH 306 (564)
T ss_pred ccHHHHHHHhhhhhhhcCchHHHHHHHHHhhC--ChhhhhhHHHHHHHHHhccCHhhHHHHHHHHHhhh-hcchhhhhhh
Confidence 56777888999999999999999999987653 343322 2222223456788887777776665442 1122223233
Q ss_pred HHHHHhcCCHHHHHHHHhccCC---CCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCCh
Q 036003 267 IDMHAKCGRLDDAVSVFDNMSG---KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP-DEITFLGLLYACSHTGLV 342 (558)
Q Consensus 267 ~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~ 342 (558)
+......++++.|+.+-++... +++..|-.-...+.+.+++++|.-.|+..+. +.| +-..|..|+.+|...|++
T Consensus 307 ~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~--Lap~rL~~Y~GL~hsYLA~~~~ 384 (564)
T KOG1174|consen 307 AQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQM--LAPYRLEIYRGLFHSYLAQKRF 384 (564)
T ss_pred hhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHh--cchhhHHHHHHHHHHHHhhchH
Confidence 4445566788888888877653 4666676667788899999999999999887 454 568999999999999999
Q ss_pred HHHHHHHHHchhhcCCCCChhHHHHHH-HH-HhhcCCHHHHHHHHHhC-CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHH
Q 036003 343 DEGWNYFYSMRDKYGIVPGIKHYGCMV-DL-LGRAGRLDEAYRFIDEL-PIKSTP-ILWRTLLSSCSSHNNLGLAKQVIE 418 (558)
Q Consensus 343 ~~a~~~~~~~~~~~~~~~~~~~~~~li-~~-~~~~g~~~~A~~~~~~~-~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~ 418 (558)
.+|.-.-+...+ .++-+..+...+. .. +.....-++|.+++++. ..+|+- ...+.+...+...|.++.++.+++
T Consensus 385 kEA~~~An~~~~--~~~~sA~~LtL~g~~V~~~dp~~rEKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe 462 (564)
T KOG1174|consen 385 KEANALANWTIR--LFQNSARSLTLFGTLVLFPDPRMREKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLE 462 (564)
T ss_pred HHHHHHHHHHHH--HhhcchhhhhhhcceeeccCchhHHHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHH
Confidence 999887777665 4445555554442 22 22333448899999886 677764 566777888899999999999999
Q ss_pred HHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhC
Q 036003 419 RIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 419 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
+.+...|+. ..++.|++.+...+.+++|.+.|......
T Consensus 463 ~~L~~~~D~-~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 463 KHLIIFPDV-NLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHhhcccc-HHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 999888764 78899999999999999999999987663
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.7e-07 Score=91.00 Aligned_cols=381 Identities=14% Similarity=0.117 Sum_probs=213.8
Q ss_pred CCHHHHHHHHccCCC-----CCcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHH
Q 036003 70 SSMEHAHLLFDRIPE-----PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGK 144 (558)
Q Consensus 70 ~~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~ 144 (558)
|++...+..|++... .....|...+......|-++.++.+|++.++- .| ..-+.-+.-++.. +++++|.
T Consensus 116 ~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~--~P--~~~eeyie~L~~~--d~~~eaa 189 (835)
T KOG2047|consen 116 GLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV--AP--EAREEYIEYLAKS--DRLDEAA 189 (835)
T ss_pred chHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc--CH--HHHHHHHHHHHhc--cchHHHH
Confidence 677777777765433 24456777777777777788888888887763 33 3355566666677 7888888
Q ss_pred HHHHHHHHhC------CCChHHHHHHHHHHHHhCCCh---HHHHHHHhccCC--CCc--chHHHHHHHHHHCCCccHHHH
Q 036003 145 QLHCFAIKLG------LNSNLYVCTTLINLYAECSDV---EAARRIFENISE--PCV--VSYNAIITAYARSSRPNEALS 211 (558)
Q Consensus 145 ~~~~~~~~~g------~~~~~~~~~~ll~~~~~~g~~---~~A~~~~~~~~~--~~~--~~~~~li~~~~~~g~~~~A~~ 211 (558)
+.+...+... .+.+...|..+-+..++.-+. -....+++.+.. +|. ..|++|..-|.+.|.+++|..
T Consensus 190 ~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarD 269 (835)
T KOG2047|consen 190 QRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARD 269 (835)
T ss_pred HHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHH
Confidence 8777766431 244555666666666655432 233445555544 332 468888889999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHhcc----------------C------ChHHHHHHHHHHHHhCC-----------CC
Q 036003 212 LFRELQERNLKPTDVTMLSALSSCALL----------------G------SLDLGKWIHEYIKKYGL-----------DK 258 (558)
Q Consensus 212 ~~~~m~~~~~~p~~~~~~~ll~~~~~~----------------~------~~~~a~~~~~~~~~~~~-----------~~ 258 (558)
+|++....- .+..-|..+.++|++- + +++-....|+.+...+. +.
T Consensus 270 vyeeai~~v--~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~ 347 (835)
T KOG2047|consen 270 VYEEAIQTV--MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPH 347 (835)
T ss_pred HHHHHHHhh--eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCc
Confidence 988876642 2333344444433321 1 12223333333333220 11
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccCCC---------CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCC---H
Q 036003 259 YVKVNTALIDMHAKCGRLDDAVSVFDNMSGK---------DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPD---E 326 (558)
Q Consensus 259 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~---~ 326 (558)
++..|..-+. +..|+..+-...|.+.... -...|..+...|-.+|+.+.|..+|++..+...+-- .
T Consensus 348 nV~eW~kRV~--l~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa 425 (835)
T KOG2047|consen 348 NVEEWHKRVK--LYEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLA 425 (835)
T ss_pred cHHHHHhhhh--hhcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHH
Confidence 2222222222 1234445555555444311 223477777788888888888888888776432211 1
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHchhhc---------CCCC-------ChhHHHHHHHHHhhcCCHHHHHHHHHhC-C
Q 036003 327 ITFLGLLYACSHTGLVDEGWNYFYSMRDKY---------GIVP-------GIKHYGCMVDLLGRAGRLDEAYRFIDEL-P 389 (558)
Q Consensus 327 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---------~~~~-------~~~~~~~li~~~~~~g~~~~A~~~~~~~-~ 389 (558)
..|..-...-.+..+++.|+.+.+...... +..| +...|..+++.....|-++....+++++ .
T Consensus 426 ~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriid 505 (835)
T KOG2047|consen 426 EVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIID 505 (835)
T ss_pred HHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 233333444455667777777776655310 0001 2345566666666777777777777776 1
Q ss_pred CC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCC--CCcccHHhHHHHHHh-c--CChHHHHHHHHHHHhCCCcc
Q 036003 390 IK-STPILWRTLLSSCSSHNNLGLAKQVIERIFELDD--SHGGDYVILSNLCAR-A--GRWEDVDYLRKLMKDRGVLK 461 (558)
Q Consensus 390 ~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~l~~~~~~-~--g~~~~A~~~~~~m~~~g~~~ 461 (558)
.+ .++...-.....+..+.-++++.+++++-+.+-+ .-...|+..+.-+.+ - ...+.|..+|++..+ |.+|
T Consensus 506 LriaTPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp 582 (835)
T KOG2047|consen 506 LRIATPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPP 582 (835)
T ss_pred HhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCH
Confidence 11 1232222233334556667778888888777663 222344444433322 2 246778888888877 5544
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.11 E-value=9.8e-06 Score=78.56 Aligned_cols=176 Identities=15% Similarity=0.126 Sum_probs=114.8
Q ss_pred CCHHHHHHHHhccCCCC-HHhHHHHHHHHH--HCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 036003 274 GRLDDAVSVFDNMSGKD-TQAWSAMIVAYA--THGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFY 350 (558)
Q Consensus 274 g~~~~A~~~~~~~~~~~-~~~~~~li~~~~--~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 350 (558)
+..+.+.++...+...- ...+..++.... +...+.++.+++...-+....-.....-..+......|+++.|.+++.
T Consensus 321 nk~~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~ 400 (652)
T KOG2376|consen 321 NKMDQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILS 400 (652)
T ss_pred hhHHHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 34455555555444332 233344443322 222466777777777664222223445556667788999999999999
Q ss_pred --------HchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--------CCCCC-HHHHHHHHHHHHhcCCHHHH
Q 036003 351 --------SMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL--------PIKST-PILWRTLLSSCSSHNNLGLA 413 (558)
Q Consensus 351 --------~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~~~-~~~~~~l~~~~~~~g~~~~a 413 (558)
.+.+ +...+.+..+++..+.+.++.+.|..++++. ...+. ..++.-+...-.++|+.++|
T Consensus 401 ~~~~~~~ss~~~---~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea 477 (652)
T KOG2376|consen 401 LFLESWKSSILE---AKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEA 477 (652)
T ss_pred HHhhhhhhhhhh---hccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHH
Confidence 4432 2334456667888888888877777776654 11221 23444445555678999999
Q ss_pred HHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHH
Q 036003 414 KQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKL 453 (558)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 453 (558)
..+++++++..|++..+...++.+|++. +.+.|..+-+.
T Consensus 478 ~s~leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~ 516 (652)
T KOG2376|consen 478 SSLLEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKK 516 (652)
T ss_pred HHHHHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhc
Confidence 9999999999999999999999999887 67777776543
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=8.8e-09 Score=97.11 Aligned_cols=147 Identities=12% Similarity=-0.002 Sum_probs=76.0
Q ss_pred CCccHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH
Q 036003 204 SRPNEALSLFRELQERN-LKPT--DVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAV 280 (558)
Q Consensus 204 g~~~~A~~~~~~m~~~~-~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 280 (558)
+..+.++.-+.++.... ..|+ ...|..+...+...|+.++|...|++..+.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45555666666655431 1121 2334455555666666666666666665543 234555566666666666666666
Q ss_pred HHHhccCC--C-CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHch
Q 036003 281 SVFDNMSG--K-DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMR 353 (558)
Q Consensus 281 ~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 353 (558)
+.|++..+ | +..+|..+..++...|++++|++.|++..+. .|+..........+...++.++|...|.+..
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~--~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~ 192 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQD--DPNDPYRALWLYLAESKLDPKQAKENLKQRY 192 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 66665532 1 3445555555666666666666666666553 3332211111112233455666666664443
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.3e-07 Score=90.03 Aligned_cols=44 Identities=16% Similarity=0.126 Sum_probs=35.5
Q ss_pred HHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHH
Q 036003 410 LGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKL 453 (558)
Q Consensus 410 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 453 (558)
.++|.++++-+.+..|++..+|..-..+|.+.|++--|.+.+.+
T Consensus 473 Le~A~kfl~pL~~~a~~~~et~~laFeVy~Rk~K~LLaLqaL~k 516 (517)
T PF12569_consen 473 LEEAMKFLKPLLELAPDNIETHLLAFEVYLRKGKYLLALQALKK 516 (517)
T ss_pred HHHHHHHHHHHHHhCccchhhHHHHhHHHHhcCcHHHHHHHHHh
Confidence 57788888888888888888888888888888888877776653
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=99.11 E-value=5.4e-08 Score=91.77 Aligned_cols=146 Identities=8% Similarity=-0.111 Sum_probs=88.9
Q ss_pred CCChHHHHHHHhccCC-----C--CcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHH
Q 036003 172 CSDVEAARRIFENISE-----P--CVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLG 244 (558)
Q Consensus 172 ~g~~~~A~~~~~~~~~-----~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 244 (558)
.+..+.++.-+.++.. + ....|..+...|...|++++|...|++..+.. +.+...|+.+...+...|++++|
T Consensus 39 ~~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A 117 (296)
T PRK11189 39 TLQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAA 117 (296)
T ss_pred chHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHH
Confidence 3455556666555543 1 12346666667777777777777777776653 33456777777777777777777
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCH--HhHHHHHHHHHHCCChHHHHHHHHHHHH
Q 036003 245 KWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDT--QAWSAMIVAYATHGQGHKSILMFEEMMK 319 (558)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--~~~~~li~~~~~~~~~~~a~~~~~~m~~ 319 (558)
...|++..+.. +.+...+..+..++...|++++|.+.|+...+.++ .........+...+++++|...|++...
T Consensus 118 ~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~ 193 (296)
T PRK11189 118 YEAFDSVLELD-PTYNYAYLNRGIALYYGGRYELAQDDLLAFYQDDPNDPYRALWLYLAESKLDPKQAKENLKQRYE 193 (296)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHh
Confidence 77777777654 22345556677777777777777777776653321 1111111223345667777777765543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.2e-08 Score=86.88 Aligned_cols=163 Identities=15% Similarity=0.129 Sum_probs=140.3
Q ss_pred hHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHH
Q 036003 293 AWSAMIVAYATHGQGHKSILMFEEMMKAQVSPD-EITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDL 371 (558)
Q Consensus 293 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 371 (558)
+...|.-+|.+.|+...|..-+++.++. .|+ ..++..+...|.+.|..+.|.+-|+...+ --+-+..+.|.....
T Consensus 37 arlqLal~YL~~gd~~~A~~nlekAL~~--DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~F 112 (250)
T COG3063 37 ARLQLALGYLQQGDYAQAKKNLEKALEH--DPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHH
Confidence 3556778899999999999999999984 454 47888888899999999999999999885 334467888999999
Q ss_pred HhhcCCHHHHHHHHHhCCCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHH
Q 036003 372 LGRAGRLDEAYRFIDELPIKST----PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDV 447 (558)
Q Consensus 372 ~~~~g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 447 (558)
+|..|++++|...|++.-..|+ ..+|..+.-+..+.|+.+.|...|++.++.+|..+.+...+.....+.|++-.|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 9999999999999999733332 468888888889999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCC
Q 036003 448 DYLRKLMKDRGV 459 (558)
Q Consensus 448 ~~~~~~m~~~g~ 459 (558)
..++++....+.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 999999887665
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.06 E-value=1.1e-06 Score=85.79 Aligned_cols=101 Identities=17% Similarity=0.153 Sum_probs=76.7
Q ss_pred CCChhHH--HHHHHHHhhcCCHHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhH
Q 036003 359 VPGIKHY--GCMVDLLGRAGRLDEAYRFIDEL-PIKSTPI-LWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVIL 434 (558)
Q Consensus 359 ~~~~~~~--~~li~~~~~~g~~~~A~~~~~~~-~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 434 (558)
+|....| -.++..|-+.|+++.|..+++.. ...|+.+ .|..=.+.+...|++++|...++++.+++.+|...-.--
T Consensus 366 ~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdHTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~INsKc 445 (700)
T KOG1156|consen 366 PPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDHTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRAINSKC 445 (700)
T ss_pred CchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHHHHHHH
Confidence 4444444 45677888999999999999987 5566643 444555778888999999999999999997764444455
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCCC
Q 036003 435 SNLCARAGRWEDVDYLRKLMKDRGV 459 (558)
Q Consensus 435 ~~~~~~~g~~~~A~~~~~~m~~~g~ 459 (558)
+.-..++.+.++|.++..+..+.|.
T Consensus 446 AKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 446 AKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHccccHHHHHHHHHhhhccc
Confidence 6667788999999999988877664
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=99.05 E-value=1.4e-06 Score=85.03 Aligned_cols=342 Identities=15% Similarity=0.100 Sum_probs=205.3
Q ss_pred CCHHHHHHHHccCCC---CCcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHH
Q 036003 70 SSMEHAHLLFDRIPE---PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQL 146 (558)
Q Consensus 70 ~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~ 146 (558)
|+-++|........+ .+.+.|..+.-.+-...++++|++.|+...+.+.. |...+.-+--.-++. |+++.....
T Consensus 55 g~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d-N~qilrDlslLQ~Qm--Rd~~~~~~t 131 (700)
T KOG1156|consen 55 GKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD-NLQILRDLSLLQIQM--RDYEGYLET 131 (700)
T ss_pred cchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC-cHHHHHHHHHHHHHH--HhhhhHHHH
Confidence 788888887776665 34556777777777778888888888888775322 344455444444555 777777777
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCC-----CCcchHHHH------HHHHHHCCCccHHHHHHHH
Q 036003 147 HCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE-----PCVVSYNAI------ITAYARSSRPNEALSLFRE 215 (558)
Q Consensus 147 ~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l------i~~~~~~g~~~~A~~~~~~ 215 (558)
...+.+.. +.....|..+..++.-.|+...|..+.+...+ ++...|.-. .......|..++|++.+..
T Consensus 132 r~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~ 210 (700)
T KOG1156|consen 132 RNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLD 210 (700)
T ss_pred HHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHh
Confidence 76666643 33556677777777778888888777766543 333333222 1334566777777777655
Q ss_pred HHHCCCCCCHHHH-HHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH-HHHhccCCC----
Q 036003 216 LQERNLKPTDVTM-LSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAV-SVFDNMSGK---- 289 (558)
Q Consensus 216 m~~~~~~p~~~~~-~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~~---- 289 (558)
-... ..|...+ ..-...+.+.+++++|..++..+.... +.+...|-.+..++.+-.+.-++. .+|....+.
T Consensus 211 ~e~~--i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~Ll~rn-Pdn~~Yy~~l~~~lgk~~d~~~~lk~ly~~ls~~y~r~ 287 (700)
T KOG1156|consen 211 NEKQ--IVDKLAFEETKADLLMKLGQLEEAVKVYRRLLERN-PDNLDYYEGLEKALGKIKDMLEALKALYAILSEKYPRH 287 (700)
T ss_pred hhhH--HHHHHHHhhhHHHHHHHHhhHHhHHHHHHHHHhhC-chhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhhcCccc
Confidence 4332 1222222 233455667788888888888877764 333444444455554222222222 445444211
Q ss_pred -----------C--------------------HHhHHHHHHHHHHCCChHHHHHHHHHHHH--------CCC--------
Q 036003 290 -----------D--------------------TQAWSAMIVAYATHGQGHKSILMFEEMMK--------AQV-------- 322 (558)
Q Consensus 290 -----------~--------------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~--------~g~-------- 322 (558)
+ +.++..+...|-. +.++- +++++.. .|.
T Consensus 288 e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~---p~k~~-~le~Lvt~y~~~L~~~~~f~~~D~~~ 363 (700)
T KOG1156|consen 288 ECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKD---PEKVA-FLEKLVTSYQHSLSGTGMFNFLDDGK 363 (700)
T ss_pred ccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhc---hhHhH-HHHHHHHHHHhhcccccCCCcccccc
Confidence 0 1112222222221 11111 3333221 111
Q ss_pred --CCCH--HHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHH
Q 036003 323 --SPDE--ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPG-IKHYGCMVDLLGRAGRLDEAYRFIDELP--IKSTPI 395 (558)
Q Consensus 323 --~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~ 395 (558)
+|.. .++..++..+-+.|+++.|..+++.... ..|+ ++.|..-.+.+...|.+++|..++++.. ..+|..
T Consensus 364 ~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AId---HTPTliEly~~KaRI~kH~G~l~eAa~~l~ea~elD~aDR~ 440 (700)
T KOG1156|consen 364 QEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAID---HTPTLIELYLVKARIFKHAGLLDEAAAWLDEAQELDTADRA 440 (700)
T ss_pred cCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhc---cCchHHHHHHHHHHHHHhcCChHHHHHHHHHHHhccchhHH
Confidence 3444 4556677788889999999999988874 3444 5666677788899999999999998872 234444
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHccCC
Q 036003 396 LWRTLLSSCSSHNNLGLAKQVIERIFELDD 425 (558)
Q Consensus 396 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 425 (558)
.-.--..-..+.++.++|.++....-+.+.
T Consensus 441 INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 441 INSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 433555666788899999999888877665
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.04 E-value=4.1e-07 Score=90.82 Aligned_cols=121 Identities=11% Similarity=0.041 Sum_probs=60.9
Q ss_pred HHHHHHhcCCHHHHHHHHhccCCC---CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh
Q 036003 266 LIDMHAKCGRLDDAVSVFDNMSGK---DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLV 342 (558)
Q Consensus 266 l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 342 (558)
+...|-..|++++|+++++...+. .+..|..-...+-..|++.+|.+.++........ |...=+.....+.+.|++
T Consensus 200 lAqhyd~~g~~~~Al~~Id~aI~htPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~ 278 (517)
T PF12569_consen 200 LAQHYDYLGDYEKALEYIDKAIEHTPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRI 278 (517)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCH
Confidence 344455556666666666554432 2334555555566666666666666665553221 333444444555566666
Q ss_pred HHHHHHHHHchhhcCCCCChhH--------HHHHHHHHhhcCCHHHHHHHHHhC
Q 036003 343 DEGWNYFYSMRDKYGIVPGIKH--------YGCMVDLLGRAGRLDEAYRFIDEL 388 (558)
Q Consensus 343 ~~a~~~~~~~~~~~~~~~~~~~--------~~~li~~~~~~g~~~~A~~~~~~~ 388 (558)
++|.+++...... +..|.... ......+|.+.|++..|++.|..+
T Consensus 279 e~A~~~~~~Ftr~-~~~~~~~L~~mQc~Wf~~e~a~a~~r~~~~~~ALk~~~~v 331 (517)
T PF12569_consen 279 EEAEKTASLFTRE-DVDPLSNLNDMQCMWFETECAEAYLRQGDYGLALKRFHAV 331 (517)
T ss_pred HHHHHHHHhhcCC-CCCcccCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 6666666655543 32221111 122344555666666665554443
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.03 E-value=1.6e-07 Score=82.86 Aligned_cols=393 Identities=11% Similarity=0.018 Sum_probs=241.8
Q ss_pred CCCCChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCCC---CcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCccc
Q 036003 48 HLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEP---DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYS 124 (558)
Q Consensus 48 g~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 124 (558)
|+.....-+++.+..+.+. .++++|++++..-.++ +....+.|..+|-...++..|.+.|+++-.. -|...-
T Consensus 5 g~~i~EGeftaviy~lI~d---~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~q 79 (459)
T KOG4340|consen 5 GAQIPEGEFTAVVYRLIRD---ARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQ 79 (459)
T ss_pred cccCCCCchHHHHHHHHHH---hhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHH
Confidence 3333344466677777787 8999999988776553 4556777888888999999999999998764 444444
Q ss_pred HHHH-HHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHH--HHHHhCCChHHHHHHHhccCC-CCcchHHHHHHHH
Q 036003 125 FPSL-LKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLI--NLYAECSDVEAARRIFENISE-PCVVSYNAIITAY 200 (558)
Q Consensus 125 ~~~l-l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll--~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~ 200 (558)
|..- ...+-+. +.+..|+++...|... ++...-..-+ ......+|+..+..+.++... .+..+.+......
T Consensus 80 YrlY~AQSLY~A--~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en~Ad~~in~gCll 154 (459)
T KOG4340|consen 80 YRLYQAQSLYKA--CIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSENEADGQINLGCLL 154 (459)
T ss_pred HHHHHHHHHHHh--cccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCCccchhccchhee
Confidence 4322 1223344 7788888888777542 2222211112 223467899999999999984 6666777777777
Q ss_pred HHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCC-------------chh------
Q 036003 201 ARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDK-------------YVK------ 261 (558)
Q Consensus 201 ~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-------------~~~------ 261 (558)
.+.|+++.|++-|+...+-+---....|+..+ +..+.++.+.|.+...++.++|+.. |+.
T Consensus 155 ykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~ 233 (459)
T KOG4340|consen 155 YKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTL 233 (459)
T ss_pred eccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhcccchH
Confidence 88999999999999887654333445666554 4557789999999999998877521 111
Q ss_pred ---------HHHHHHHHHHhcCCHHHHHHHHhccCCC-----CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHH
Q 036003 262 ---------VNTALIDMHAKCGRLDDAVSVFDNMSGK-----DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEI 327 (558)
Q Consensus 262 ---------~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 327 (558)
.+|.-...+.+.|+++.|.+.+..|+.+ |++|...+.-. -..+++.+..+-+.-+.+... -...
T Consensus 234 ~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~~nP-fP~E 311 (459)
T KOG4340|consen 234 VLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQQNP-FPPE 311 (459)
T ss_pred HHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHhcCC-CChH
Confidence 1222233456789999999999999855 66665444322 123556666666666666432 3457
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHchhhcCCC-CChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHH-H
Q 036003 328 TFLGLLYACSHTGLVDEGWNYFYSMRDKYGIV-PGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSC-S 405 (558)
Q Consensus 328 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~-~ 405 (558)
||..++-.||+..-++.|-.++.+-... ... .+...|+.|=......-..++|.+-++.+...-....-...+..- .
T Consensus 312 TFANlLllyCKNeyf~lAADvLAEn~~l-Tyk~L~~Yly~LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~ 390 (459)
T KOG4340|consen 312 TFANLLLLYCKNEYFDLAADVLAENAHL-TYKFLTPYLYDLLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEA 390 (459)
T ss_pred HHHHHHHHHhhhHHHhHHHHHHhhCcch-hHHHhhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8889999999999888888887654331 111 233344433333334455666666555441000000001111111 1
Q ss_pred hcCCH----HHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhC
Q 036003 406 SHNNL----GLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 406 ~~g~~----~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
+..+- ..+.+-+++.+++-- .+...-...|.+..++..+.++|+.-.+.
T Consensus 391 r~~~dd~a~R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~Svef 443 (459)
T KOG4340|consen 391 RHNRDDEAIRKAVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVEF 443 (459)
T ss_pred HhcccHHHHHHHHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHhh
Confidence 11111 222333333333321 13455667788889999999999877653
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.03 E-value=2.3e-05 Score=76.69 Aligned_cols=411 Identities=13% Similarity=0.151 Sum_probs=271.0
Q ss_pred HHHHHHHHccCCCCCcccHHHHHHHHhcCCCchHHHHHHHHhHHC-CCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHH
Q 036003 72 MEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNS-GLLPDDYSFPSLLKACACVGAEALEEGKQLHCFA 150 (558)
Q Consensus 72 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~ 150 (558)
++.+..++.+|++ .|-..+..+.++|++......|+..+.. -+......|...+.-.... +-++.+..+++..
T Consensus 91 ~er~lv~mHkmpR----Iwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~--~lPets~rvyrRY 164 (835)
T KOG2047|consen 91 FERCLVFMHKMPR----IWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESH--GLPETSIRVYRRY 164 (835)
T ss_pred HHHHHHHHhcCCH----HHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhC--CChHHHHHHHHHH
Confidence 4445556666654 6888888999999999999999988764 4444556788888877777 8889999999998
Q ss_pred HHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCC----------CCcchHHHHHHHHHHCCC---ccHHHHHHHHHH
Q 036003 151 IKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE----------PCVVSYNAIITAYARSSR---PNEALSLFRELQ 217 (558)
Q Consensus 151 ~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----------~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~ 217 (558)
++. ++..-+--+..+++.+++++|.+.+..... .+...|+.+.....+.-+ --...++++.+.
T Consensus 165 Lk~----~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi 240 (835)
T KOG2047|consen 165 LKV----APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGI 240 (835)
T ss_pred Hhc----CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhc
Confidence 874 333467788899999999999999988764 334457666666555432 333445555554
Q ss_pred HCCCCCCH--HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc----------------C-----
Q 036003 218 ERNLKPTD--VTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKC----------------G----- 274 (558)
Q Consensus 218 ~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----------------g----- 274 (558)
.. -+|. ..|.+|..-|.+.|.+++|..+|++....-. ...-|+.+.++|+.- |
T Consensus 241 ~r--ftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v~--tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~ 316 (835)
T KOG2047|consen 241 RR--FTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQTVM--TVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDD 316 (835)
T ss_pred cc--CcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhe--ehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhh
Confidence 43 3454 3678899999999999999999998876532 222233333333321 1
Q ss_pred -CHHHHHHHHhccCCC---------------CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCH------HHHHHH
Q 036003 275 -RLDDAVSVFDNMSGK---------------DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDE------ITFLGL 332 (558)
Q Consensus 275 -~~~~A~~~~~~~~~~---------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~------~~~~~l 332 (558)
+++-....|+.+..+ ++..|..-+. ...|+..+-...|.+..+. +.|.. ..|..+
T Consensus 317 ~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~f 393 (835)
T KOG2047|consen 317 VDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEF 393 (835)
T ss_pred hhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHH
Confidence 122233333333221 2333433322 2356778888888888775 44432 467788
Q ss_pred HHHHHccCChHHHHHHHHHchhhcCCCCC---hhHHHHHHHHHhhcCCHHHHHHHHHhC---CCCC--------------
Q 036003 333 LYACSHTGLVDEGWNYFYSMRDKYGIVPG---IKHYGCMVDLLGRAGRLDEAYRFIDEL---PIKS-------------- 392 (558)
Q Consensus 333 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~~~~~~g~~~~A~~~~~~~---~~~~-------------- 392 (558)
...|-..|+++.|..+|++..+. ..+-- ..+|..-..+-.+..+++.|++++++. |..|
T Consensus 394 aklYe~~~~l~~aRvifeka~~V-~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~r 472 (835)
T KOG2047|consen 394 AKLYENNGDLDDARVIFEKATKV-PYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQAR 472 (835)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcC-CccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHH
Confidence 88899999999999999998863 33322 456666677777889999999999987 2221
Q ss_pred ---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhCCCccCCcccEEE
Q 036003 393 ---TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIE 469 (558)
Q Consensus 393 ---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~ 469 (558)
+...|..+++..-..|-++....++++++++.-..|......+..+....-++++.+++++=.. +.+-|..+- +
T Consensus 473 lhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~YErgI~--LFk~p~v~d-i 549 (835)
T KOG2047|consen 473 LHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAYERGIS--LFKWPNVYD-I 549 (835)
T ss_pred HHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHHHcCCc--cCCCccHHH-H
Confidence 1235666666667788999999999999998866666666666666677778999999875332 233333221 1
Q ss_pred ECCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHcCcccC
Q 036003 470 VNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPD 509 (558)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~pd 509 (558)
|+..+..|+..++.. . .+.++.||++-.+ |+.|+
T Consensus 550 W~tYLtkfi~rygg~-k----lEraRdLFEqaL~-~Cpp~ 583 (835)
T KOG2047|consen 550 WNTYLTKFIKRYGGT-K----LERARDLFEQALD-GCPPE 583 (835)
T ss_pred HHHHHHHHHHHhcCC-C----HHHHHHHHHHHHh-cCCHH
Confidence 222233333332211 1 2334456666655 88887
|
|
| >PF14432 DYW_deaminase: DYW family of nucleic acid deaminases | Back alignment and domain information |
|---|
Probab=99.02 E-value=5.5e-10 Score=87.38 Aligned_cols=76 Identities=66% Similarity=1.000 Sum_probs=61.6
Q ss_pred cccEEEECCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHcCcccCCCCcccCCCChHHH--------HHHhhhchHHHH
Q 036003 464 GCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPDTSLVHHGDMEDEEK--------EIALRYHSEKLA 535 (558)
Q Consensus 464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~pd~~~~~~~~~~~~~~--------~~~l~~~~~~~~ 535 (558)
+++|+.+ +.|+.++..||.. ++..++...|+.|++..+. .+++++++ +..+..|+||+|
T Consensus 2 ~~~w~~~----h~F~sgd~shp~~--------~~~~~~~~~~~~~~~~~~~-~~~~~e~~~~~d~~~~~~~~~~HSEKlA 68 (116)
T PF14432_consen 2 GCSWIEV----HSFVSGDRSHPQS--------ELINKMKEEGYVPDTKEVG-HDVDEEEKHDYDEEEKEESLCYHSEKLA 68 (116)
T ss_pred CCCccce----EEEEeCCCcCccH--------HHHHHHHHcCCcchhhhhC-CCchhhhhhhcccccchhhhhccHHHHH
Confidence 4567655 7899999999976 4667888889999988877 34544433 568899999999
Q ss_pred HHHhhcCCCCCCcEEEeccc-cCC
Q 036003 536 ITFGLLNTPPGTTIRVVKNL-RVC 558 (558)
Q Consensus 536 ~~~~~~~~~~~~~~~~~~~~-~~~ 558 (558)
++|+++.+ ++++|+ |||
T Consensus 69 iafgli~~------~vvkn~~RvC 86 (116)
T PF14432_consen 69 IAFGLINT------RVVKNLKRVC 86 (116)
T ss_pred HHhcccce------eEEecCCccc
Confidence 99999988 888888 999
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.98 E-value=5.1e-07 Score=86.31 Aligned_cols=367 Identities=13% Similarity=0.087 Sum_probs=236.2
Q ss_pred CCHHHHHHHHccCCC---CCcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCc-ccHHHHHHHHHhcCcccHHHHHH
Q 036003 70 SSMEHAHLLFDRIPE---PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDD-YSFPSLLKACACVGAEALEEGKQ 145 (558)
Q Consensus 70 ~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~~~~~a~~ 145 (558)
|+++.|...|..... +|-..|+.-..+|+..|++++|++=-.+-++ +.|+- ..|.-.-.++... |++++|..
T Consensus 16 ~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~--l~p~w~kgy~r~Gaa~~~l--g~~~eA~~ 91 (539)
T KOG0548|consen 16 GDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRR--LNPDWAKGYSRKGAALFGL--GDYEEAIL 91 (539)
T ss_pred ccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHh--cCCchhhHHHHhHHHHHhc--ccHHHHHH
Confidence 999999999987653 5677789999999999999999887766665 45553 4577777777777 99999999
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhc------cCC-------CCcchHHHHHHHHHHC---------
Q 036003 146 LHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFEN------ISE-------PCVVSYNAIITAYARS--------- 203 (558)
Q Consensus 146 ~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~------~~~-------~~~~~~~~li~~~~~~--------- 203 (558)
-|.+-++.. +.+...++.|..++.- +. .+.+.|.. +.. .....|..++..+-+.
T Consensus 92 ay~~GL~~d-~~n~~L~~gl~~a~~~--~~-~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~ 167 (539)
T KOG0548|consen 92 AYSEGLEKD-PSNKQLKTGLAQAYLE--DY-AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLN 167 (539)
T ss_pred HHHHHhhcC-CchHHHHHhHHHhhhH--HH-HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccc
Confidence 999888764 5567777888777711 11 11222211 110 0111233333222211
Q ss_pred -CCccHHHHHHHH-----HHHCC-------CCC------------C----------HHHHHHHHHHHhccCChHHHHHHH
Q 036003 204 -SRPNEALSLFRE-----LQERN-------LKP------------T----------DVTMLSALSSCALLGSLDLGKWIH 248 (558)
Q Consensus 204 -g~~~~A~~~~~~-----m~~~~-------~~p------------~----------~~~~~~ll~~~~~~~~~~~a~~~~ 248 (558)
.+...|...+.. +...| ..| | ..-...+.++..+..+++.+.+-+
T Consensus 168 d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y 247 (539)
T KOG0548|consen 168 DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHY 247 (539)
T ss_pred cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHH
Confidence 111111111110 00000 111 0 012344566666777788888888
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHH---hHH-------HHHHHHHHCCChHHHHHHHHHHH
Q 036003 249 EYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQ---AWS-------AMIVAYATHGQGHKSILMFEEMM 318 (558)
Q Consensus 249 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~-------~li~~~~~~~~~~~a~~~~~~m~ 318 (558)
....+.. -++..++....+|...|.+.++...-+...+.... -|+ .+..+|.+.++++.++..|++..
T Consensus 248 ~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaL 325 (539)
T KOG0548|consen 248 AKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKAL 325 (539)
T ss_pred HHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHh
Confidence 8777765 56666677778888888887777666554433111 122 23445666777888888888866
Q ss_pred HCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCCh-hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHH
Q 036003 319 KAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGI-KHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPI 395 (558)
Q Consensus 319 ~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~ 395 (558)
.....|+.. .+....+++........ -+.|.. .-...-...+.+.|++..|.+.+.++ ...| |..
T Consensus 326 te~Rt~~~l---------s~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~Da~ 393 (539)
T KOG0548|consen 326 TEHRTPDLL---------SKLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPEDAR 393 (539)
T ss_pred hhhcCHHHH---------HHHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCchhH
Confidence 544444322 22233344444333332 233332 11223366788899999999999997 3344 678
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhCC
Q 036003 396 LWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRG 458 (558)
Q Consensus 396 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 458 (558)
.|....-+|.+.|.+..|+.-.+..++++|+....|..-+.++....+|++|.+.|++-.+.+
T Consensus 394 lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 394 LYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 888899999999999999999999999999999999999999999999999999999887754
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.96 E-value=3.9e-07 Score=77.78 Aligned_cols=87 Identities=15% Similarity=0.102 Sum_probs=34.1
Q ss_pred HHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 036003 196 IITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGR 275 (558)
Q Consensus 196 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 275 (558)
|.-+|.+.|+...|..-+++.++.. +.+..++..+...|.+.|+.+.|.+.|++..+.. +-+..+.|.....+|..|+
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~-p~~GdVLNNYG~FLC~qg~ 118 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLA-PNNGDVLNNYGAFLCAQGR 118 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcC-CCccchhhhhhHHHHhCCC
Confidence 3334444444444444444444331 1222334444444444444444444444443332 2223333333333344444
Q ss_pred HHHHHHHHh
Q 036003 276 LDDAVSVFD 284 (558)
Q Consensus 276 ~~~A~~~~~ 284 (558)
+++|...|+
T Consensus 119 ~~eA~q~F~ 127 (250)
T COG3063 119 PEEAMQQFE 127 (250)
T ss_pred hHHHHHHHH
Confidence 444443333
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.96 E-value=1e-06 Score=88.05 Aligned_cols=356 Identities=16% Similarity=0.131 Sum_probs=230.6
Q ss_pred CChhHHHHHHH--HhhcCCCCCCHHHHHHHHccCCCCCcccHHHHHHHHhcCCCchHHHHHHHHhHHC-CC--------C
Q 036003 51 NDLNVLTKLIN--FCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNS-GL--------L 119 (558)
Q Consensus 51 ~~~~~~~~li~--~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~--------~ 119 (558)
-|..+-.++++ +|..- |+.+.|.+-.+.+. +...|..|.+.+.+.++.+-|.-.+-.|... |. .
T Consensus 724 Cd~~TRkaml~FSfyvti---G~MD~AfksI~~Ik--S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~ 798 (1416)
T KOG3617|consen 724 CDESTRKAMLDFSFYVTI---GSMDAAFKSIQFIK--SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQN 798 (1416)
T ss_pred cCHHHHHhhhceeEEEEe---ccHHHHHHHHHHHh--hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhC
Confidence 45667777776 67777 99999998887765 5678999999999999998888877776542 21 1
Q ss_pred CCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCC-CCcchHHHHHH
Q 036003 120 PDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE-PCVVSYNAIIT 198 (558)
Q Consensus 120 p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~li~ 198 (558)
|+ .+=.-+.-..... |.+++|+.+|++..+.+ .|=..|-..|.+++|.++-+.-.. .=..||.....
T Consensus 799 ~~-e~eakvAvLAieL--gMlEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~ 866 (1416)
T KOG3617|consen 799 GE-EDEAKVAVLAIEL--GMLEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAK 866 (1416)
T ss_pred Cc-chhhHHHHHHHHH--hhHHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHH
Confidence 22 2222222223345 99999999999887643 444677788999999998765433 12235666666
Q ss_pred HHHHCCCccHHHHHHHHH----------HHCC---------CCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCc
Q 036003 199 AYARSSRPNEALSLFREL----------QERN---------LKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKY 259 (558)
Q Consensus 199 ~~~~~g~~~~A~~~~~~m----------~~~~---------~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 259 (558)
-+-..++.+.|++.|++. .... -..|...|..-.......|+.|.|+.+|...++.
T Consensus 867 ~Lear~Di~~AleyyEK~~~hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D~----- 941 (1416)
T KOG3617|consen 867 YLEARRDIEAALEYYEKAGVHAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKDY----- 941 (1416)
T ss_pred HHHhhccHHHHHHHHHhcCChHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhhh-----
Confidence 666778888888887763 2211 1123333444445555677888888887776653
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 036003 260 VKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHT 339 (558)
Q Consensus 260 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 339 (558)
-.+++..|-.|+.++|-++-++- .|..+...+...|-..|++.+|...|.+... |...|+.|-..
T Consensus 942 ----fs~VrI~C~qGk~~kAa~iA~es--gd~AAcYhlaR~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEn 1006 (1416)
T KOG3617|consen 942 ----FSMVRIKCIQGKTDKAARIAEES--GDKAACYHLARMYENDGDVVKAVKFFTRAQA---------FSNAIRLCKEN 1006 (1416)
T ss_pred ----hhheeeEeeccCchHHHHHHHhc--ccHHHHHHHHHHhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhc
Confidence 45677777788888888776653 3666677788899999999999999887643 33444333222
Q ss_pred ---------------CChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHh-------------CCCC
Q 036003 340 ---------------GLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDE-------------LPIK 391 (558)
Q Consensus 340 ---------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~-------------~~~~ 391 (558)
.+.-.|-.+|++.- . -..--+..|-++|.+.+|+++--+ +...
T Consensus 1007 d~~d~L~nlal~s~~~d~v~aArYyEe~g----~-----~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~ 1077 (1416)
T KOG3617|consen 1007 DMKDRLANLALMSGGSDLVSAARYYEELG----G-----YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAG 1077 (1416)
T ss_pred CHHHHHHHHHhhcCchhHHHHHHHHHHcc----h-----hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCC
Confidence 22333334444332 1 112234567788888888765311 1223
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHc---------------------cC-CC------C---cccHHhHHHHHHh
Q 036003 392 STPILWRTLLSSCSSHNNLGLAKQVIERIFE---------------------LD-DS------H---GGDYVILSNLCAR 440 (558)
Q Consensus 392 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---------------------~~-~~------~---~~~~~~l~~~~~~ 440 (558)
.|+...+.-...+..+.++++|..++-.+.+ +- |. . ......++..|.+
T Consensus 1078 sDp~ll~RcadFF~~~~qyekAV~lL~~ar~~~~AlqlC~~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~q 1157 (1416)
T KOG3617|consen 1078 SDPKLLRRCADFFENNQQYEKAVNLLCLAREFSGALQLCKNRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQ 1157 (1416)
T ss_pred CCHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHhcCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHh
Confidence 4666777777777777888888777654432 10 11 0 1246678899999
Q ss_pred cCChHHHHHHHH
Q 036003 441 AGRWEDVDYLRK 452 (558)
Q Consensus 441 ~g~~~~A~~~~~ 452 (558)
+|.|..|.+-|.
T Consensus 1158 QG~Yh~AtKKfT 1169 (1416)
T KOG3617|consen 1158 QGAYHAATKKFT 1169 (1416)
T ss_pred ccchHHHHHHHh
Confidence 999888877654
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.94 E-value=6.6e-08 Score=89.83 Aligned_cols=246 Identities=9% Similarity=0.025 Sum_probs=131.4
Q ss_pred HhCCChHHHHHHHhccCC----CCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHH
Q 036003 170 AECSDVEAARRIFENISE----PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGK 245 (558)
Q Consensus 170 ~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 245 (558)
.-.|.+..++.-.+ ... .+......+.+++...|+++.++ .+..... .|.......+...+...++-+.+.
T Consensus 12 fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e~~l 86 (290)
T PF04733_consen 12 FYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKESAL 86 (290)
T ss_dssp HCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHHCHH
T ss_pred HHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchHHHH
Confidence 34556666554443 111 11223344556666666655433 3332222 444444444444333323333333
Q ss_pred HHHHHHHHhCCC-CchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCC
Q 036003 246 WIHEYIKKYGLD-KYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP 324 (558)
Q Consensus 246 ~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 324 (558)
.-++........ .+..+......++...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+. ..
T Consensus 87 ~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~--~e 162 (290)
T PF04733_consen 87 EELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI--DE 162 (290)
T ss_dssp HHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC--SC
T ss_pred HHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CC
Confidence 333222222212 22222223334566678888887777665 45566666777788888888888888887763 33
Q ss_pred CHHHHHHHHHHHHc----cCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 036003 325 DEITFLGLLYACSH----TGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWR 398 (558)
Q Consensus 325 ~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~ 398 (558)
| .+...+..++.. .+.+.+|..+|+++.+ ...+++.+.+.+..++...|++++|.+++.+. ...| ++.+..
T Consensus 163 D-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~--~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~La 239 (290)
T PF04733_consen 163 D-SILTQLAEAWVNLATGGEKYQDAFYIFEELSD--KFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLA 239 (290)
T ss_dssp C-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHC--CS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHH
T ss_pred c-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHh--ccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHH
Confidence 3 334444444322 3357778888888765 44566677777777777777777777777765 2223 455666
Q ss_pred HHHHHHHhcCCH-HHHHHHHHHHHccCCCC
Q 036003 399 TLLSSCSSHNNL-GLAKQVIERIFELDDSH 427 (558)
Q Consensus 399 ~l~~~~~~~g~~-~~a~~~~~~~~~~~~~~ 427 (558)
.++.+....|+. +.+.+++.++....|.+
T Consensus 240 Nliv~~~~~gk~~~~~~~~l~qL~~~~p~h 269 (290)
T PF04733_consen 240 NLIVCSLHLGKPTEAAERYLSQLKQSNPNH 269 (290)
T ss_dssp HHHHHHHHTT-TCHHHHHHHHHCHHHTTTS
T ss_pred HHHHHHHHhCCChhHHHHHHHHHHHhCCCC
Confidence 666666666666 55667777777666664
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.91 E-value=5.6e-08 Score=93.49 Aligned_cols=216 Identities=14% Similarity=0.132 Sum_probs=171.2
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC---CHHhHHHHHHHHHHCCChHHHH
Q 036003 235 CALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK---DTQAWSAMIVAYATHGQGHKSI 311 (558)
Q Consensus 235 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~ 311 (558)
+.+.|++.+|.-.|+..++.. +-+...|..|.......++-..|+..+++..+- |..+.-.|...|...|.-..|+
T Consensus 295 lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 295 LMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 356788888888888888765 556788888888888888888888888877643 6667778888899999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHH-----------HHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHH
Q 036003 312 LMFEEMMKAQVSPDEITFLGLL-----------YACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDE 380 (558)
Q Consensus 312 ~~~~~m~~~g~~p~~~~~~~ll-----------~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 380 (558)
+.++.-+....+ |..+. ..+.....+....++|-++....+..+|..++..|.-.|--.|.+++
T Consensus 374 ~~L~~Wi~~~p~-----y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdr 448 (579)
T KOG1125|consen 374 KMLDKWIRNKPK-----YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDR 448 (579)
T ss_pred HHHHHHHHhCcc-----chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHH
Confidence 999887663211 11111 11222233445566666666544656888899999999999999999
Q ss_pred HHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 381 AYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 381 A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
|.+.|+.. .++| |...||-|...+....+.++|+..|.+++++.|.-..+...|+..|...|.|++|.+.|=....
T Consensus 449 aiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL~ 526 (579)
T KOG1125|consen 449 AVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEALS 526 (579)
T ss_pred HHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHHH
Confidence 99999987 5566 5689999999999999999999999999999999999999999999999999999998866554
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.90 E-value=3.5e-06 Score=82.51 Aligned_cols=195 Identities=13% Similarity=0.014 Sum_probs=101.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCCC---CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCC-CCCH--HHHHHHHHHHH
Q 036003 264 TALIDMHAKCGRLDDAVSVFDNMSGK---DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV-SPDE--ITFLGLLYACS 337 (558)
Q Consensus 264 ~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~--~~~~~ll~~~~ 337 (558)
..+...+...|++++|.+.+++..+. +...+..+...+...|++++|...+++...... .|+. ..|..+...+.
T Consensus 118 ~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~ 197 (355)
T cd05804 118 GMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYL 197 (355)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHH
Confidence 34445556666666666666655422 344556666666666666666666666655321 1222 23345556666
Q ss_pred ccCChHHHHHHHHHchhhcCCCCChhHH-H--HHHHHHhhcCCHHHHHHH---HHhC----CCCCCHHHHHHHHHHHHhc
Q 036003 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHY-G--CMVDLLGRAGRLDEAYRF---IDEL----PIKSTPILWRTLLSSCSSH 407 (558)
Q Consensus 338 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~-~--~li~~~~~~g~~~~A~~~---~~~~----~~~~~~~~~~~l~~~~~~~ 407 (558)
..|++++|..++++........+..... + .++..+...|....+.++ .... +.............++...
T Consensus 198 ~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 277 (355)
T cd05804 198 ERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGA 277 (355)
T ss_pred HCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcC
Confidence 6777777777776654221111111111 1 222222233322222221 1111 1001111222455566777
Q ss_pred CCHHHHHHHHHHHHccCCC---------CcccHHhHHHHHHhcCChHHHHHHHHHHHhCC
Q 036003 408 NNLGLAKQVIERIFELDDS---------HGGDYVILSNLCARAGRWEDVDYLRKLMKDRG 458 (558)
Q Consensus 408 g~~~~a~~~~~~~~~~~~~---------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 458 (558)
|+.+.|..+++.+...... ..........++...|++++|.+.+......+
T Consensus 278 ~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 278 GDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFAEGNYATALELLGPVRDDL 337 (355)
T ss_pred CCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 8888888888877653311 12234455666789999999999998877643
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.89 E-value=3.1e-08 Score=92.04 Aligned_cols=244 Identities=12% Similarity=0.053 Sum_probs=163.9
Q ss_pred HHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 036003 198 TAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277 (558)
Q Consensus 198 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 277 (558)
+-+.-.|++..++.-.+ .....-..+......+.+++...|+.+.+. .++.... .|.......+...+...++-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 34455788888886655 222211223345556778888888876543 3333333 666666655554444335555
Q ss_pred HHHHHHhccC-CC----CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHc
Q 036003 278 DAVSVFDNMS-GK----DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSM 352 (558)
Q Consensus 278 ~A~~~~~~~~-~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 352 (558)
.+..-++... +. +....-.....+...|++++|++++.+- .+.......+..+.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 6665554433 32 2222222234566779999999988752 35677778889999999999999999999
Q ss_pred hhhcCCCCChhHHHHHHHHHh----hcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 036003 353 RDKYGIVPGIKHYGCMVDLLG----RAGRLDEAYRFIDEL--PIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS 426 (558)
Q Consensus 353 ~~~~~~~~~~~~~~~li~~~~----~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 426 (558)
.+ +..|. +...|..++. -.+.+.+|..+|+++ ...+++.+.+.+..+....|++++|.++++++++.+|.
T Consensus 158 ~~---~~eD~-~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~ 233 (290)
T PF04733_consen 158 QQ---IDEDS-ILTQLAEAWVNLATGGEKYQDAFYIFEELSDKFGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPN 233 (290)
T ss_dssp HC---CSCCH-HHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCCS--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CC
T ss_pred Hh---cCCcH-HHHHHHHHHHHHHhCchhHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccC
Confidence 74 34443 3334444433 345799999999999 44578889999999999999999999999999999999
Q ss_pred CcccHHhHHHHHHhcCCh-HHHHHHHHHHHh
Q 036003 427 HGGDYVILSNLCARAGRW-EDVDYLRKLMKD 456 (558)
Q Consensus 427 ~~~~~~~l~~~~~~~g~~-~~A~~~~~~m~~ 456 (558)
++.+...++.+....|+. +.+.+++.+++.
T Consensus 234 ~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 234 DPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred CHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 999999999999999988 667888888776
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.89 E-value=7.4e-06 Score=90.89 Aligned_cols=328 Identities=12% Similarity=-0.026 Sum_probs=173.3
Q ss_pred HHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCC------CC--hHHHHHHHHH
Q 036003 96 GYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGL------NS--NLYVCTTLIN 167 (558)
Q Consensus 96 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~------~~--~~~~~~~ll~ 167 (558)
.+...|+++.+..+++.+.......+..........+... ++++++...+......-- .+ .......+..
T Consensus 383 ~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~--g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~ 460 (903)
T PRK04841 383 SLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQ--HRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQ 460 (903)
T ss_pred HHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHC--CCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHH
Confidence 3445566666666665542211111222222222333344 777887777776654310 11 1122222334
Q ss_pred HHHhCCChHHHHHHHhccCC----CCc----chHHHHHHHHHHCCCccHHHHHHHHHHHCCC---CC--CHHHHHHHHHH
Q 036003 168 LYAECSDVEAARRIFENISE----PCV----VSYNAIITAYARSSRPNEALSLFRELQERNL---KP--TDVTMLSALSS 234 (558)
Q Consensus 168 ~~~~~g~~~~A~~~~~~~~~----~~~----~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~---~p--~~~~~~~ll~~ 234 (558)
.+...|++++|...+++... .+. ...+.+...+...|++++|...+.+.....- .+ ....+..+...
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 55667888888777766432 111 2334555566677888888777776653210 11 11234445556
Q ss_pred HhccCChHHHHHHHHHHHHh----CCC--C-chhHHHHHHHHHHhcCCHHHHHHHHhccCCC--------CHHhHHHHHH
Q 036003 235 CALLGSLDLGKWIHEYIKKY----GLD--K-YVKVNTALIDMHAKCGRLDDAVSVFDNMSGK--------DTQAWSAMIV 299 (558)
Q Consensus 235 ~~~~~~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~ 299 (558)
+...|+++.|...+++.... +.. + ....+..+...+...|++++|...+++.... ....+..+..
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 67778888887777665442 211 1 1223444555666678888877777655321 1223444556
Q ss_pred HHHHCCChHHHHHHHHHHHHCC--CCCCHH--HH--HHHHHHHHccCChHHHHHHHHHchhhcCCCCC---hhHHHHHHH
Q 036003 300 AYATHGQGHKSILMFEEMMKAQ--VSPDEI--TF--LGLLYACSHTGLVDEGWNYFYSMRDKYGIVPG---IKHYGCMVD 370 (558)
Q Consensus 300 ~~~~~~~~~~a~~~~~~m~~~g--~~p~~~--~~--~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~li~ 370 (558)
.+...|++++|...+++..... ...... .. ...+..+...|+.+.|...+...... ..... ...+..+..
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~-~~~~~~~~~~~~~~~a~ 699 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKP-EFANNHFLQGQWRNIAR 699 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCC-CCccchhHHHHHHHHHH
Confidence 6677788888877777764421 110000 00 11123334467777777776665431 11111 011334556
Q ss_pred HHhhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 036003 371 LLGRAGRLDEAYRFIDEL-------PIKST-PILWRTLLSSCSSHNNLGLAKQVIERIFELDDS 426 (558)
Q Consensus 371 ~~~~~g~~~~A~~~~~~~-------~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 426 (558)
++...|+.++|..++++. +...+ ..+...+..++...|+.++|...+.++++....
T Consensus 700 ~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la~~ 763 (903)
T PRK04841 700 AQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLANR 763 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCc
Confidence 677777777777777665 11111 234555566677778888888888887776533
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.89 E-value=3e-06 Score=76.76 Aligned_cols=385 Identities=12% Similarity=0.046 Sum_probs=227.1
Q ss_pred HHHHHHH-HhhcCCCCCCHHHHHHHHccCCC---CCcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHH
Q 036003 55 VLTKLIN-FCTQNPTTSSMEHAHLLFDRIPE---PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLK 130 (558)
Q Consensus 55 ~~~~li~-~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 130 (558)
..+..|. .|-+. |++++|...+..+.+ ++...+-.|.-.+.-.|.+.+|..+-....+ ++..-..++.
T Consensus 58 ~~~lWia~C~fhL---gdY~~Al~~Y~~~~~~~~~~~el~vnLAcc~FyLg~Y~eA~~~~~ka~k-----~pL~~RLlfh 129 (557)
T KOG3785|consen 58 SLQLWIAHCYFHL---GDYEEALNVYTFLMNKDDAPAELGVNLACCKFYLGQYIEAKSIAEKAPK-----TPLCIRLLFH 129 (557)
T ss_pred HHHHHHHHHHHhh---ccHHHHHHHHHHHhccCCCCcccchhHHHHHHHHHHHHHHHHHHhhCCC-----ChHHHHHHHH
Confidence 4444455 33445 899999888877654 5556666666666667778888776654422 2223333444
Q ss_pred HHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCC--CCcchHHH-HHHHHHHCCCcc
Q 036003 131 ACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE--PCVVSYNA-IITAYARSSRPN 207 (558)
Q Consensus 131 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~-li~~~~~~g~~~ 207 (558)
...+. ++-++...++..+.. ...-.-+|.........+++|++++.++.. |+-...|. +.-+|.+..-++
T Consensus 130 lahkl--ndEk~~~~fh~~LqD-----~~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn~ey~alNVy~ALCyyKlDYyd 202 (557)
T KOG3785|consen 130 LAHKL--NDEKRILTFHSSLQD-----TLEDQLSLASVHYMRMHYQEAIDVYKRVLQDNPEYIALNVYMALCYYKLDYYD 202 (557)
T ss_pred HHHHh--CcHHHHHHHHHHHhh-----hHHHHHhHHHHHHHHHHHHHHHHHHHHHHhcChhhhhhHHHHHHHHHhcchhh
Confidence 44455 677777666665543 223334455555555678999999999876 44444444 344677778888
Q ss_pred HHHHHHHHHHHCCCCCCHH-HHHHHHHHHhc--cCChHHHH------------HHHHHHHHhCC------------CCc-
Q 036003 208 EALSLFRELQERNLKPTDV-TMLSALSSCAL--LGSLDLGK------------WIHEYIKKYGL------------DKY- 259 (558)
Q Consensus 208 ~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~--~~~~~~a~------------~~~~~~~~~~~------------~~~- 259 (558)
-+.+++.--.+. -||+. ..+.......+ .|+..+.+ ...+.+.++++ -|.
T Consensus 203 vsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L 280 (557)
T KOG3785|consen 203 VSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSL 280 (557)
T ss_pred hHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHH
Confidence 888888776654 34433 23322221111 11111110 11222222211 000
Q ss_pred ----hhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCC-------hHHHHHHHHHHHHCCCCCCH-H
Q 036003 260 ----VKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQ-------GHKSILMFEEMMKAQVSPDE-I 327 (558)
Q Consensus 260 ----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~-------~~~a~~~~~~m~~~g~~p~~-~ 327 (558)
+..--.|+--|.+.+++++|..+.+++....+.-|-.-...++..|+ ..-|...|+-.-..+..-|. .
T Consensus 281 ~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIp 360 (557)
T KOG3785|consen 281 MKHIPEARLNLIIYYLNQNDVQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIP 360 (557)
T ss_pred HhhChHhhhhheeeecccccHHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhccccccccccc
Confidence 11112355568899999999999999877666655444444444443 33444445444344433222 1
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHH-HHHHH
Q 036003 328 TFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELP--IKSTPILWRT-LLSSC 404 (558)
Q Consensus 328 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~-l~~~~ 404 (558)
.-.++..++.-..++++.+.+++.+.. +-...|... -.+..+++..|.+.+|+++|-++. .-.|..+|.+ |.++|
T Consensus 361 GRQsmAs~fFL~~qFddVl~YlnSi~s-YF~NdD~Fn-~N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCy 438 (557)
T KOG3785|consen 361 GRQSMASYFFLSFQFDDVLTYLNSIES-YFTNDDDFN-LNLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCY 438 (557)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHH-HhcCcchhh-hHHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHH
Confidence 223344445555678888888888876 233334433 357899999999999999998882 1135566655 55677
Q ss_pred HhcCCHHHHHHHHHHHHccC-CCCc-ccHHhHHHHHHhcCChHHHHHHHHHHHhCCCcc
Q 036003 405 SSHNNLGLAKQVIERIFELD-DSHG-GDYVILSNLCARAGRWEDVDYLRKLMKDRGVLK 461 (558)
Q Consensus 405 ~~~g~~~~a~~~~~~~~~~~-~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 461 (558)
.+.++.+.|..++ ++.+ |... .....+..-|.+++.+--|.+.|+.+...+..|
T Consensus 439 i~nkkP~lAW~~~---lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~p 494 (557)
T KOG3785|consen 439 IRNKKPQLAWDMM---LKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPTP 494 (557)
T ss_pred HhcCCchHHHHHH---HhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCCc
Confidence 8889998886654 4444 2222 234455677889999988888888887654433
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.88 E-value=6.6e-06 Score=80.58 Aligned_cols=193 Identities=10% Similarity=-0.048 Sum_probs=97.6
Q ss_pred cHHHHHHHHhcCCCchHHHHHHHHhHHCCC-CCCcccHHHHHHH--HHhcCcccHHHHHHHHHHHHHhCCCChHHHHHH-
Q 036003 89 LFNTMARGYSRSKTPIRAIFLFVELLNSGL-LPDDYSFPSLLKA--CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTT- 164 (558)
Q Consensus 89 ~~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~--~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~- 164 (558)
.|..+...+...|+.+.+...+....+... .++..... .+.+ +... |++++|.+.+++..+.. +.+...+..
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~-~~~a~~~~~~--g~~~~A~~~~~~~l~~~-P~~~~a~~~~ 83 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERA-HVEALSAWIA--GDLPKALALLEQLLDDY-PRDLLALKLH 83 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHH-HHHHHHHHHc--CCHHHHHHHHHHHHHHC-CCcHHHHHHh
Confidence 455555666666777776666665544311 11211111 1222 2233 78888888888777653 333333331
Q ss_pred --HHHHHHhCCChHHHHHHHhccCC--CC-cchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 036003 165 --LINLYAECSDVEAARRIFENISE--PC-VVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLG 239 (558)
Q Consensus 165 --ll~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 239 (558)
+.......+..+.+.+.++.... |+ ......+...+...|++++|.+.+++..+.. +.+...+..+..++...|
T Consensus 84 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g 162 (355)
T cd05804 84 LGAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQG 162 (355)
T ss_pred HHHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcC
Confidence 11111223444555555544222 11 1223344456666777777777777766643 333445555666666666
Q ss_pred ChHHHHHHHHHHHHhCCC-Cch--hHHHHHHHHHHhcCCHHHHHHHHhcc
Q 036003 240 SLDLGKWIHEYIKKYGLD-KYV--KVNTALIDMHAKCGRLDDAVSVFDNM 286 (558)
Q Consensus 240 ~~~~a~~~~~~~~~~~~~-~~~--~~~~~l~~~~~~~g~~~~A~~~~~~~ 286 (558)
++++|..++++..+.... ++. ..|..+...+...|++++|.++|++.
T Consensus 163 ~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~ 212 (355)
T cd05804 163 RFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTH 212 (355)
T ss_pred CHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 666666666666554211 111 12334455555555555555555554
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.85 E-value=2.5e-05 Score=80.19 Aligned_cols=350 Identities=13% Similarity=0.092 Sum_probs=207.1
Q ss_pred HHHHHHHHHhCCC--CChhHHHHHHHHhhcCCCCCCHHHHHHHHccCC-CCCccc-----HHHHHHHHhcCCCchHHHHH
Q 036003 38 KQIHAVTIKTHLQ--NDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIP-EPDIVL-----FNTMARGYSRSKTPIRAIFL 109 (558)
Q Consensus 38 ~~~~~~~~~~g~~--~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~-~~~~~~-----~~~li~~~~~~g~~~~A~~~ 109 (558)
+++.+..++.+++ .|+.-.+.-+.++... +-..+..++++++. ++++.+ -|.||-.-.+. +..+..+.
T Consensus 967 RqLiDqVv~tal~E~~dPe~vS~tVkAfMta---dLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~Y 1042 (1666)
T KOG0985|consen 967 RQLIDQVVQTALPETQDPEEVSVTVKAFMTA---DLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEY 1042 (1666)
T ss_pred HHHHHHHHHhcCCccCChHHHHHHHHHHHhc---CCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHH
Confidence 4444555554442 3344444445555555 55666666666653 232222 23333333332 33444444
Q ss_pred HHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCCCC
Q 036003 110 FVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPC 189 (558)
Q Consensus 110 ~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~ 189 (558)
.+++-... .| .+...+... +-+++|..+|+.. ..+....+.|+.- -+.++.|.+.-++..+|
T Consensus 1043 I~rLdnyD-a~------~ia~iai~~--~LyEEAF~ifkkf-----~~n~~A~~VLie~---i~~ldRA~efAe~~n~p- 1104 (1666)
T KOG0985|consen 1043 INRLDNYD-AP------DIAEIAIEN--QLYEEAFAIFKKF-----DMNVSAIQVLIEN---IGSLDRAYEFAERCNEP- 1104 (1666)
T ss_pred HHHhccCC-ch------hHHHHHhhh--hHHHHHHHHHHHh-----cccHHHHHHHHHH---hhhHHHHHHHHHhhCCh-
Confidence 44443221 11 122223333 5566677666553 3344444444442 35667777777766544
Q ss_pred cchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 036003 190 VVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDM 269 (558)
Q Consensus 190 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 269 (558)
..|..+..+-.+.|...+|++-|-+. -|+..|..++..+.+.|.+++-.+++...++..-+|.+. +.|+-+
T Consensus 1105 -~vWsqlakAQL~~~~v~dAieSyika------dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~A 1175 (1666)
T KOG0985|consen 1105 -AVWSQLAKAQLQGGLVKDAIESYIKA------DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFA 1175 (1666)
T ss_pred -HHHHHHHHHHHhcCchHHHHHHHHhc------CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHH
Confidence 46899999999999999998877543 367789999999999999999999999888877777665 568999
Q ss_pred HHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 036003 270 HAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYF 349 (558)
Q Consensus 270 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 349 (558)
|++.+++.+.++++. .+|......+..-|...|.++.|.-+|.. ...|..|...+...|++..|...-
T Consensus 1176 yAkt~rl~elE~fi~---gpN~A~i~~vGdrcf~~~~y~aAkl~y~~---------vSN~a~La~TLV~LgeyQ~AVD~a 1243 (1666)
T KOG0985|consen 1176 YAKTNRLTELEEFIA---GPNVANIQQVGDRCFEEKMYEAAKLLYSN---------VSNFAKLASTLVYLGEYQGAVDAA 1243 (1666)
T ss_pred HHHhchHHHHHHHhc---CCCchhHHHHhHHHhhhhhhHHHHHHHHH---------hhhHHHHHHHHHHHHHHHHHHHHh
Confidence 999999988777643 45565666667777777777777666653 234556666666666666665544
Q ss_pred HHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC
Q 036003 350 YSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPI--KSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH 427 (558)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 427 (558)
++.. +..+|..+-.+|...+.+.-|.- .+. --...-..-++..|...|-+++.+.+++..+.+...+
T Consensus 1244 RKAn-------s~ktWK~VcfaCvd~~EFrlAQi----CGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAH 1312 (1666)
T KOG0985|consen 1244 RKAN-------STKTWKEVCFACVDKEEFRLAQI----CGLNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAH 1312 (1666)
T ss_pred hhcc-------chhHHHHHHHHHhchhhhhHHHh----cCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHH
Confidence 3332 44556555555555444433211 111 1122334445566666666666666666666665555
Q ss_pred cccHHhHHHHHHhc
Q 036003 428 GGDYVILSNLCARA 441 (558)
Q Consensus 428 ~~~~~~l~~~~~~~ 441 (558)
...|.-|+..|++-
T Consensus 1313 MgmfTELaiLYsky 1326 (1666)
T KOG0985|consen 1313 MGMFTELAILYSKY 1326 (1666)
T ss_pred HHHHHHHHHHHHhc
Confidence 55555555555544
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.83 E-value=4.7e-06 Score=92.50 Aligned_cols=321 Identities=10% Similarity=-0.028 Sum_probs=204.6
Q ss_pred ccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCC----CC---c-----chHHHHHHHHHHCCC
Q 036003 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE----PC---V-----VSYNAIITAYARSSR 205 (558)
Q Consensus 138 ~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----~~---~-----~~~~~li~~~~~~g~ 205 (558)
|+.+.+...++.+.......+..........+...|++++|...++.... .+ . .....+...+...|+
T Consensus 388 g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~ 467 (903)
T PRK04841 388 GELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAINDGD 467 (903)
T ss_pred CChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhCCC
Confidence 55555555554432111111222334455666788999999888876532 11 1 112223345667899
Q ss_pred ccHHHHHHHHHHHCCCCCCH----HHHHHHHHHHhccCChHHHHHHHHHHHHhCC---CC--chhHHHHHHHHHHhcCCH
Q 036003 206 PNEALSLFRELQERNLKPTD----VTMLSALSSCALLGSLDLGKWIHEYIKKYGL---DK--YVKVNTALIDMHAKCGRL 276 (558)
Q Consensus 206 ~~~A~~~~~~m~~~~~~p~~----~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~~~~~~g~~ 276 (558)
+++|...+++..+.--..+. .....+...+...|++++|...+++...... .+ ....+..+...+...|++
T Consensus 468 ~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G~~ 547 (903)
T PRK04841 468 PEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQGFL 547 (903)
T ss_pred HHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCCCH
Confidence 99999999987663111121 2344556667789999999999988764321 11 123445567788899999
Q ss_pred HHHHHHHhccCCC-----------CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCC--CCCC--HHHHHHHHHHHHccCC
Q 036003 277 DDAVSVFDNMSGK-----------DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ--VSPD--EITFLGLLYACSHTGL 341 (558)
Q Consensus 277 ~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g--~~p~--~~~~~~ll~~~~~~g~ 341 (558)
++|...+++.... ....+..+...+...|++++|...+++..... ..+. ...+..+...+...|+
T Consensus 548 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~G~ 627 (903)
T PRK04841 548 QAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAKISLARGD 627 (903)
T ss_pred HHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHHHHHHcCC
Confidence 9999988765421 12234455667778899999999998876531 1122 2344455667788999
Q ss_pred hHHHHHHHHHchhhcCCCCChhHH-----HHHHHHHhhcCCHHHHHHHHHhCCCC--CCH----HHHHHHHHHHHhcCCH
Q 036003 342 VDEGWNYFYSMRDKYGIVPGIKHY-----GCMVDLLGRAGRLDEAYRFIDELPIK--STP----ILWRTLLSSCSSHNNL 410 (558)
Q Consensus 342 ~~~a~~~~~~~~~~~~~~~~~~~~-----~~li~~~~~~g~~~~A~~~~~~~~~~--~~~----~~~~~l~~~~~~~g~~ 410 (558)
++.|.+.+...............+ ...+..+...|+.+.|..++...... ... ..+..+..++...|++
T Consensus 628 ~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~~~g~~ 707 (903)
T PRK04841 628 LDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARAQILLGQF 707 (903)
T ss_pred HHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHHHHHcCCH
Confidence 999999988875421111111111 11224455689999999998776211 111 1234567778899999
Q ss_pred HHHHHHHHHHHccCCC------CcccHHhHHHHHHhcCChHHHHHHHHHHHhCC
Q 036003 411 GLAKQVIERIFELDDS------HGGDYVILSNLCARAGRWEDVDYLRKLMKDRG 458 (558)
Q Consensus 411 ~~a~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 458 (558)
++|...+++++..... ...++..+..+|.+.|+.++|...+.+..+..
T Consensus 708 ~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~la 761 (903)
T PRK04841 708 DEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKLA 761 (903)
T ss_pred HHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh
Confidence 9999999998875311 22356678888999999999999999887643
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.80 E-value=1.8e-06 Score=85.31 Aligned_cols=164 Identities=16% Similarity=0.228 Sum_probs=86.2
Q ss_pred HHHHhcCCHHHHHHHHhccCCCCHHh--HHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHH
Q 036003 268 DMHAKCGRLDDAVSVFDNMSGKDTQA--WSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG 345 (558)
Q Consensus 268 ~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 345 (558)
.+......|.+|+.+++.+..+++.+ |..+...|+..|+++.|.++|-+.- .++-.|..|.+.|++..|
T Consensus 740 eaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~da 810 (1636)
T KOG3616|consen 740 EAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWEDA 810 (1636)
T ss_pred HHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHHH
Confidence 33444555666666666555543332 5555556666666666666654421 233445556666666666
Q ss_pred HHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC---------------------------HHHHH
Q 036003 346 WNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKST---------------------------PILWR 398 (558)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~---------------------------~~~~~ 398 (558)
.++-.+.. |.......|-+-..-+-+.|++.+|.+++-.++ .|+ ..|..
T Consensus 811 ~kla~e~~---~~e~t~~~yiakaedldehgkf~eaeqlyiti~-~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~ 886 (1636)
T KOG3616|consen 811 FKLAEECH---GPEATISLYIAKAEDLDEHGKFAEAEQLYITIG-EPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHK 886 (1636)
T ss_pred HHHHHHhc---CchhHHHHHHHhHHhHHhhcchhhhhheeEEcc-CchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHH
Confidence 55544442 333344444444444455555555555544433 222 12333
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHH
Q 036003 399 TLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRK 452 (558)
Q Consensus 399 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 452 (558)
.+..-+-..|+...|+..|-++- -|..-+++|...+.|++|.++-+
T Consensus 887 ~f~~e~e~~g~lkaae~~flea~--------d~kaavnmyk~s~lw~dayriak 932 (1636)
T KOG3616|consen 887 HFAKELEAEGDLKAAEEHFLEAG--------DFKAAVNMYKASELWEDAYRIAK 932 (1636)
T ss_pred HHHHHHHhccChhHHHHHHHhhh--------hHHHHHHHhhhhhhHHHHHHHHh
Confidence 34444455555555555544332 35566677878888888877765
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.79 E-value=2.9e-06 Score=76.84 Aligned_cols=371 Identities=12% Similarity=0.070 Sum_probs=223.4
Q ss_pred CCHHHHHHHHccCCCCC---cccHHH-HHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHH
Q 036003 70 SSMEHAHLLFDRIPEPD---IVLFNT-MARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQ 145 (558)
Q Consensus 70 ~~~~~A~~~~~~~~~~~---~~~~~~-li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~ 145 (558)
.++..|+.+++--..-+ ....+. +..++.+.|++++|+..|.-+.+. -.|+...+..|.-+..-. |.+.+|.+
T Consensus 36 rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~-~~~~~el~vnLAcc~FyL--g~Y~eA~~ 112 (557)
T KOG3785|consen 36 RDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNK-DDAPAELGVNLACCKFYL--GQYIEAKS 112 (557)
T ss_pred ccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhcc-CCCCcccchhHHHHHHHH--HHHHHHHH
Confidence 58888988887544311 112222 345667889999999999888764 355666666666665666 88888888
Q ss_pred HHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCH
Q 036003 146 LHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTD 225 (558)
Q Consensus 146 ~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~ 225 (558)
+-... +.++.....|...-.+.++-++-..+-+.+.... .---+|....-..-.+++|+++|.+.... .|+-
T Consensus 113 ~~~ka-----~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~d--n~ey 184 (557)
T KOG3785|consen 113 IAEKA-----PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQD--NPEY 184 (557)
T ss_pred HHhhC-----CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhc--Chhh
Confidence 76543 2334444455566667777776666655554321 11222333333344789999999998875 3554
Q ss_pred HHHHH-HHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh--cCCHHHH--HHHHhccC-------------
Q 036003 226 VTMLS-ALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAK--CGRLDDA--VSVFDNMS------------- 287 (558)
Q Consensus 226 ~~~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--~g~~~~A--~~~~~~~~------------- 287 (558)
...+. +.-+|.+..-++-+.++++-..+.- +.+....|....-..+ .|+..++ .++-+...
T Consensus 185 ~alNVy~ALCyyKlDYydvsqevl~vYL~q~-pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~~f~~~l~rHN 263 (557)
T KOG3785|consen 185 IALNVYMALCYYKLDYYDVSQEVLKVYLRQF-PDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEYPFIEYLCRHN 263 (557)
T ss_pred hhhHHHHHHHHHhcchhhhHHHHHHHHHHhC-CCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccchhHHHHHHcC
Confidence 44444 3445667777888888877766542 2333333333322222 1222111 11111111
Q ss_pred ------------------CCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-----HHccCChHH
Q 036003 288 ------------------GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYA-----CSHTGLVDE 344 (558)
Q Consensus 288 ------------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-----~~~~g~~~~ 344 (558)
+.=+.+--.|+--|.+.++..+|..+.+++.- ..|-......+..+ ......++-
T Consensus 264 LVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP~EyilKgvv~aalGQe~gSreHlKi 341 (557)
T KOG3785|consen 264 LVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTPYEYILKGVVFAALGQETGSREHLKI 341 (557)
T ss_pred eEEEeCCccHHHhchHHHhhChHhhhhheeeecccccHHHHHHHHhhcCC--CChHHHHHHHHHHHHhhhhcCcHHHHHH
Confidence 11112223345557788999999998877532 23333333333222 122233566
Q ss_pred HHHHHHHchhhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCC--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036003 345 GWNYFYSMRDKYGIVPG-IKHYGCMVDLLGRAGRLDEAYRFIDELP--IKSTPILWRTLLSSCSSHNNLGLAKQVIERIF 421 (558)
Q Consensus 345 a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 421 (558)
|.+.|+..-.. +..-| ...-.++...+.-..++++.+.+++.+. ...|...-..+..+.+..|++.+|+++|-++.
T Consensus 342 AqqffqlVG~S-a~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~N~AQAk~atgny~eaEelf~~is 420 (557)
T KOG3785|consen 342 AQQFFQLVGES-ALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNLNLAQAKLATGNYVEAEELFIRIS 420 (557)
T ss_pred HHHHHHHhccc-ccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhHHHHHHHHhcChHHHHHHHhhhc
Confidence 77777776554 43333 3344566667777778899988888772 22333333457889999999999999999988
Q ss_pred ccCCCCcccHH-hHHHHHHhcCChHHHHHHHHHHH
Q 036003 422 ELDDSHGGDYV-ILSNLCARAGRWEDVDYLRKLMK 455 (558)
Q Consensus 422 ~~~~~~~~~~~-~l~~~~~~~g~~~~A~~~~~~m~ 455 (558)
..+-.+..+|. .|..+|.+.|..+-|+.++-++.
T Consensus 421 ~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~ 455 (557)
T KOG3785|consen 421 GPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTN 455 (557)
T ss_pred ChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcC
Confidence 77755556665 46788999999999988876553
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.77 E-value=3e-05 Score=75.35 Aligned_cols=385 Identities=13% Similarity=0.039 Sum_probs=197.7
Q ss_pred CCChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCCCCcccHHHHHHHH--hcCCCchHHHHHHHHhHHCCCCCCcc-cHH
Q 036003 50 QNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGY--SRSKTPIRAIFLFVELLNSGLLPDDY-SFP 126 (558)
Q Consensus 50 ~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~ 126 (558)
+.+...+..=+-+..+. +.+++|.++.+.-...++...-.+=.+| -+.+..++|+..++ |..++.. +..
T Consensus 43 pdd~~a~~cKvValIq~---~ky~~ALk~ikk~~~~~~~~~~~fEKAYc~Yrlnk~Dealk~~~-----~~~~~~~~ll~ 114 (652)
T KOG2376|consen 43 PDDEDAIRCKVVALIQL---DKYEDALKLIKKNGALLVINSFFFEKAYCEYRLNKLDEALKTLK-----GLDRLDDKLLE 114 (652)
T ss_pred CCcHhhHhhhHhhhhhh---hHHHHHHHHHHhcchhhhcchhhHHHHHHHHHcccHHHHHHHHh-----cccccchHHHH
Confidence 33344444445555666 7777777666554321111111022333 35677777777776 2333332 333
Q ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHhCCCC-hHHHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHHH---HHHHHHH
Q 036003 127 SLLKACACVGAEALEEGKQLHCFAIKLGLNS-NLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNA---IITAYAR 202 (558)
Q Consensus 127 ~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~-~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~---li~~~~~ 202 (558)
.-...|-+. +++++|..+|+.+.+.+.+. +...-..++.+-. .-.+. +.+........+|.. ....++.
T Consensus 115 L~AQvlYrl--~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~~-~~q~v~~v~e~syel~yN~Ac~~i~ 187 (652)
T KOG2376|consen 115 LRAQVLYRL--ERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQVQ-LLQSVPEVPEDSYELLYNTACILIE 187 (652)
T ss_pred HHHHHHHHH--hhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhHH-HHHhccCCCcchHHHHHHHHHHHHh
Confidence 334445555 77777777777777665321 1111111211111 11111 333333322334433 3445677
Q ss_pred CCCccHHHHHHHHHHHCC-------CCC------CHH-HHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchh----HHH
Q 036003 203 SSRPNEALSLFRELQERN-------LKP------TDV-TMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK----VNT 264 (558)
Q Consensus 203 ~g~~~~A~~~~~~m~~~~-------~~p------~~~-~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~ 264 (558)
.|++.+|+++++.....+ -.- +.. .-..+..++-..|+.++|..++..+.+... +|.. ..|
T Consensus 188 ~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~~-~D~~~~Av~~N 266 (652)
T KOG2376|consen 188 NGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDIIKRNP-ADEPSLAVAVN 266 (652)
T ss_pred cccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhcC-CCchHHHHHhc
Confidence 888888888888772211 011 111 112344456678888888888888887753 3322 223
Q ss_pred HHHHHHHhcCCHH-HHHHHHhccCCCCHH--------------hH-HHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHH
Q 036003 265 ALIDMHAKCGRLD-DAVSVFDNMSGKDTQ--------------AW-SAMIVAYATHGQGHKSILMFEEMMKAQVSPDEIT 328 (558)
Q Consensus 265 ~l~~~~~~~g~~~-~A~~~~~~~~~~~~~--------------~~-~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 328 (558)
.|+.+-....-++ .++..++........ .. +.++..|.. ..+.+.++..... +..|. ..
T Consensus 267 NLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tn--k~~q~r~~~a~lp--~~~p~-~~ 341 (652)
T KOG2376|consen 267 NLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTN--KMDQVRELSASLP--GMSPE-SL 341 (652)
T ss_pred chhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhh--hHHHHHHHHHhCC--ccCch-HH
Confidence 2332211111111 222223222211111 11 122222222 2223333222211 12333 34
Q ss_pred HHHHHHHHHc--cCChHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHH--------hC-CCCCCHHH
Q 036003 329 FLGLLYACSH--TGLVDEGWNYFYSMRDKYGIVPG-IKHYGCMVDLLGRAGRLDEAYRFID--------EL-PIKSTPIL 396 (558)
Q Consensus 329 ~~~ll~~~~~--~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~--------~~-~~~~~~~~ 396 (558)
+..++..+.+ ...+..+..++....+ +.+-+ ..+.-..+......|+++.|.+++. .+ ...-.+.+
T Consensus 342 ~~~ll~~~t~~~~~~~~ka~e~L~~~~~--~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~ 419 (652)
T KOG2376|consen 342 FPILLQEATKVREKKHKKAIELLLQFAD--GHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGT 419 (652)
T ss_pred HHHHHHHHHHHHHHHHhhhHHHHHHHhc--cCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhH
Confidence 5555554432 2357778888887765 33333 4566677788889999999999998 33 22334456
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHccC----CCC---cccHHhHHHHHHhcCChHHHHHHHHHHHhC
Q 036003 397 WRTLLSSCSSHNNLGLAKQVIERIFELD----DSH---GGDYVILSNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 397 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~---~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
..++...+.+.++.+.|..++..++.-- +.. ..++..++..-.+.|+-++|..+++++.+.
T Consensus 420 V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~ 487 (652)
T KOG2376|consen 420 VGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF 487 (652)
T ss_pred HHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh
Confidence 6667777788888888888888776421 111 123334444556779999999999998773
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.77 E-value=7.5e-05 Score=74.93 Aligned_cols=369 Identities=13% Similarity=0.058 Sum_probs=228.5
Q ss_pred CChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCC----CCccc-HHHHHHHHhc-CCCchHHHHHHHHhHHC--CCC--C
Q 036003 51 NDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE----PDIVL-FNTMARGYSR-SKTPIRAIFLFVELLNS--GLL--P 120 (558)
Q Consensus 51 ~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~-~~~li~~~~~-~g~~~~A~~~~~~m~~~--g~~--p 120 (558)
.....|+.+...|..+ |.-..|..+++.-.. |+..+ +-..-..|.+ -|..+++++.-.+.... +.. .
T Consensus 355 ~~~e~w~~~als~saa---g~~s~Av~ll~~~~~~~~~ps~~s~~Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l 431 (799)
T KOG4162|consen 355 GEHERWYQLALSYSAA---GSDSKAVNLLRESLKKSEQPSDISVLLMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHL 431 (799)
T ss_pred hhHHHHHHHHHHHHHh---ccchHHHHHHHhhcccccCCCcchHHHHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhh
Confidence 4457888888899999 998899999886543 33233 3333334443 46677777777666652 111 1
Q ss_pred CcccHHHHHHHHHhcC---------cccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCC----
Q 036003 121 DDYSFPSLLKACACVG---------AEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE---- 187 (558)
Q Consensus 121 ~~~~~~~ll~~~~~~~---------~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---- 187 (558)
....|..+--+|.... .....++.+.+++.++.+. .|+.+.-.+.--|+..++++.|.+..++..+
T Consensus 432 ~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~-~dp~~if~lalq~A~~R~l~sAl~~~~eaL~l~~~ 510 (799)
T KOG4162|consen 432 KPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDP-TDPLVIFYLALQYAEQRQLTSALDYAREALALNRG 510 (799)
T ss_pred hhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHHHhHHHHHHHHHHHHHhcCC
Confidence 2233333333332111 1234456777888877653 2333333344457778899999888877654
Q ss_pred CCcchHHHHHHHHHHCCCccHHHHHHHHHHHC-CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHH-------------
Q 036003 188 PCVVSYNAIITAYARSSRPNEALSLFRELQER-NLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKK------------- 253 (558)
Q Consensus 188 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~------------- 253 (558)
.+...|..|.-.+...+++.+|+.+.+..... |. |......-+..-...++.+++......+..
T Consensus 511 ~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~--N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~we~~~~~q~~~~ 588 (799)
T KOG4162|consen 511 DSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGD--NHVLMDGKIHIELTFNDREEALDTCIHKLALWEAEYGVQQTLD 588 (799)
T ss_pred ccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhh--hhhhchhhhhhhhhcccHHHHHHHHHHHHHHHHhhhhHhhhhh
Confidence 57788999999999999999999999876543 21 111111111222223444444433322221
Q ss_pred --------hCC-------CCchhHHHHHHHHHHhcC---CHHHHHHHHhccCCCC------HHhHHHHHHHHHHCCChHH
Q 036003 254 --------YGL-------DKYVKVNTALIDMHAKCG---RLDDAVSVFDNMSGKD------TQAWSAMIVAYATHGQGHK 309 (558)
Q Consensus 254 --------~~~-------~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~~~~~~ 309 (558)
.|+ .-.+.++.-+.......+ ..+..+..+.....++ ...|......+.+.+..++
T Consensus 589 ~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~~~~ 668 (799)
T KOG4162|consen 589 EGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGNDDE 668 (799)
T ss_pred hhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCCchH
Confidence 010 011222222221111111 1111111111222222 2346667778888999999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHH--HHH
Q 036003 310 SILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVP-GIKHYGCMVDLLGRAGRLDEAYR--FID 386 (558)
Q Consensus 310 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~--~~~ 386 (558)
|...+.+.... ..-....|......+...|...+|.+.|.... .+.| ++....++..++.+.|+..-|.+ ++.
T Consensus 669 a~~CL~Ea~~~-~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~~~L~ 744 (799)
T KOG4162|consen 669 ARSCLLEASKI-DPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKRSLLS 744 (799)
T ss_pred HHHHHHHHHhc-chhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHHHHHH
Confidence 99888887764 23345667777778888999999999998887 4455 46788899999999998887777 777
Q ss_pred hC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcc
Q 036003 387 EL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGG 429 (558)
Q Consensus 387 ~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 429 (558)
++ ...| +...|..+...+.+.|+.+.|.+.|.-+.++++.+|.
T Consensus 745 dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 745 DALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 76 5555 6789999999999999999999999999999876654
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.77 E-value=9.1e-07 Score=93.31 Aligned_cols=201 Identities=12% Similarity=0.107 Sum_probs=168.4
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--------CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHH
Q 036003 257 DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK--------DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEIT 328 (558)
Q Consensus 257 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 328 (558)
|-....|-..|......+++++|++++++.... -...|.+++..-...|.-+...++|+++.+. .-....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 344667777888888999999999999887532 3446888888877888888899999999884 222356
Q ss_pred HHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHH
Q 036003 329 FLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL----PIKSTPILWRTLLSSC 404 (558)
Q Consensus 329 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~l~~~~ 404 (558)
|..|...|.+.+.+++|.++|+.|.++++ -....|..++..+.+..+-+.|..++.+. +.+.......-.+..-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88899999999999999999999999766 56778999999999999999999999886 3333455566666777
Q ss_pred HhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhCCCcc
Q 036003 405 SSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLK 461 (558)
Q Consensus 405 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 461 (558)
.+.|+.+++..+|+..+...|.....|+.+++.-.+.|+.+.++.+|++....++.+
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~ 1667 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSI 1667 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCCh
Confidence 889999999999999999999999999999999999999999999999999887764
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.69 E-value=1.1e-06 Score=87.03 Aligned_cols=226 Identities=15% Similarity=0.132 Sum_probs=178.1
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036003 256 LDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYA 335 (558)
Q Consensus 256 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 335 (558)
++|-...-..+...+.+.|-...|..+|+++ ..|.-.|.+|+..|+..+|..+..+..+ -+|+...|..+.+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 4555566677889999999999999999975 5688889999999999999999998887 47899999999998
Q ss_pred HHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 036003 336 CSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLA 413 (558)
Q Consensus 336 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a 413 (558)
.....-+++|.++.+....+ .-..+.....+.++++++.+.|+.- ...| ...+|..+..+..+.++++.|
T Consensus 467 ~~d~s~yEkawElsn~~sar--------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISAR--------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred ccChHHHHHHHHHhhhhhHH--------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 88888899999998877653 2223333344578999999999875 4445 467899999999999999999
Q ss_pred HHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhCCCccCCcccEEEECCEEEEEeeCCCCCCChHHHHHH
Q 036003 414 KQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKA 493 (558)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 493 (558)
.+.|.+...++|++...|+.+..+|.+.|+-.+|...+++..+-+.. .|-.+.+.+.-.+ +-+..+++.++
T Consensus 539 v~aF~rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~-----~w~iWENymlvsv----dvge~eda~~A 609 (777)
T KOG1128|consen 539 VKAFHRCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQ-----HWQIWENYMLVSV----DVGEFEDAIKA 609 (777)
T ss_pred HHHHHHHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCC-----CCeeeechhhhhh----hcccHHHHHHH
Confidence 99999999999999999999999999999999999999999887655 3666666543322 33556677766
Q ss_pred HHHHHHHHHHcCc
Q 036003 494 LDELVKELKMVGY 506 (558)
Q Consensus 494 ~~~l~~~m~~~g~ 506 (558)
..++ ..|+..+-
T Consensus 610 ~~rl-l~~~~~~~ 621 (777)
T KOG1128|consen 610 YHRL-LDLRKKYK 621 (777)
T ss_pred HHHH-HHhhhhcc
Confidence 6554 34444444
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.8e-05 Score=75.03 Aligned_cols=259 Identities=17% Similarity=0.193 Sum_probs=167.1
Q ss_pred HHHHHhCCChHHHHHHHhccCCCCcc--hHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHH
Q 036003 166 INLYAECSDVEAARRIFENISEPCVV--SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDL 243 (558)
Q Consensus 166 l~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 243 (558)
+.+..+...|.+|+.+++.+...++. -|..+..-|...|+++.|.++|.+.- .++-.|..|.+.|+|+.
T Consensus 739 ieaai~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~~---------~~~dai~my~k~~kw~d 809 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEAD---------LFKDAIDMYGKAGKWED 809 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhcc---------hhHHHHHHHhccccHHH
Confidence 34455667778888888877764433 36667778888888888888886532 24556677888888888
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCC
Q 036003 244 GKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVS 323 (558)
Q Consensus 244 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 323 (558)
|.++-++. .|.+.....|-+-..-+-+.|++.+|+++|-.+..|+. .|..|-+.|..+..+++.++-.
T Consensus 810 a~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h----- 877 (1636)
T KOG3616|consen 810 AFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHH----- 877 (1636)
T ss_pred HHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhC-----
Confidence 87765543 33444555666556666778888888888888777754 4667778888888887776643
Q ss_pred CCH--HHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCH-----HH
Q 036003 324 PDE--ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTP-----IL 396 (558)
Q Consensus 324 p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~-----~~ 396 (558)
|+. .|...+..-+-..|++..|...|-+.. -|.+-+++|-..+.+++|.++-+.-+- .+. ..
T Consensus 878 ~d~l~dt~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriaktegg-~n~~k~v~fl 946 (1636)
T KOG3616|consen 878 GDHLHDTHKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKTEGG-ANAEKHVAFL 946 (1636)
T ss_pred hhhhhHHHHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhcccc-ccHHHHHHHH
Confidence 332 456666777778888888887776554 255667777777778887777655421 111 11
Q ss_pred H-------------------HHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhC
Q 036003 397 W-------------------RTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 397 ~-------------------~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
| ..-+...+..+.++-|..+-+-..+.. .+..+..+..-+...|++++|-+-+-+..+.
T Consensus 947 waksiggdaavkllnk~gll~~~id~a~d~~afd~afdlari~~k~k--~~~vhlk~a~~ledegk~edaskhyveaikl 1024 (1636)
T KOG3616|consen 947 WAKSIGGDAAVKLLNKHGLLEAAIDFAADNCAFDFAFDLARIAAKDK--MGEVHLKLAMFLEDEGKFEDASKHYVEAIKL 1024 (1636)
T ss_pred HHHhhCcHHHHHHHHhhhhHHHHhhhhhcccchhhHHHHHHHhhhcc--CccchhHHhhhhhhccchhhhhHhhHHHhhc
Confidence 1 111222233444555555444433322 2345667777788999999998877766654
Q ss_pred C
Q 036003 458 G 458 (558)
Q Consensus 458 g 458 (558)
+
T Consensus 1025 n 1025 (1636)
T KOG3616|consen 1025 N 1025 (1636)
T ss_pred c
Confidence 3
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.68 E-value=5.6e-05 Score=72.77 Aligned_cols=403 Identities=12% Similarity=0.023 Sum_probs=242.5
Q ss_pred cCCchH-HHHHHHHHHhCCCC-ChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCC--CC-cccHHHHHHHHhcCCCchHH
Q 036003 32 TSFRGL-KQIHAVTIKTHLQN-DLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE--PD-IVLFNTMARGYSRSKTPIRA 106 (558)
Q Consensus 32 ~~~~~~-~~~~~~~~~~g~~~-~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A 106 (558)
...+++ ..|.......+++| |...|+.-..+|++. |++++|.+--.+..+ |+ ...|+-...++.-.|++++|
T Consensus 13 ~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~---~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA 89 (539)
T KOG0548|consen 13 FSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASL---GSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEA 89 (539)
T ss_pred cccccHHHHHHHHHHHHccCCCccchhcchHHHHHHH---hhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHH
Confidence 344566 66666666666654 567888889999999 999999887766554 43 35689999999999999999
Q ss_pred HHHHHHhHHCCCCCC-cccHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhC---CCChHHHHHHHHHHHHh----------
Q 036003 107 IFLFVELLNSGLLPD-DYSFPSLLKACACVGA-EALEEGKQLHCFAIKLG---LNSNLYVCTTLINLYAE---------- 171 (558)
Q Consensus 107 ~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~-~~~~~a~~~~~~~~~~g---~~~~~~~~~~ll~~~~~---------- 171 (558)
+..|.+-++. .|+ ...+.-+..+...... ++.-..-.++..+...- .......|..++..+-+
T Consensus 90 ~~ay~~GL~~--d~~n~~L~~gl~~a~~~~~~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~ 167 (539)
T KOG0548|consen 90 ILAYSEGLEK--DPSNKQLKTGLAQAYLEDYAADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLN 167 (539)
T ss_pred HHHHHHHhhc--CCchHHHHHhHHHhhhHHHHhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccc
Confidence 9999998775 343 3444444444411100 00000000111110000 00011122222222211
Q ss_pred CCChHHHHHHHhccC----------------CC---------C-------------cchHHHHHHHHHHCCCccHHHHHH
Q 036003 172 CSDVEAARRIFENIS----------------EP---------C-------------VVSYNAIITAYARSSRPNEALSLF 213 (558)
Q Consensus 172 ~g~~~~A~~~~~~~~----------------~~---------~-------------~~~~~~li~~~~~~g~~~~A~~~~ 213 (558)
-.++..|...+.... .| . ..-+..+.+...+..++..|++-+
T Consensus 168 d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y 247 (539)
T KOG0548|consen 168 DPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHY 247 (539)
T ss_pred cHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHH
Confidence 111222222221110 01 0 012445667777888999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCc------hhHHHHHHHHHHhcCCHHHHHHHHhccC
Q 036003 214 RELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKY------VKVNTALIDMHAKCGRLDDAVSVFDNMS 287 (558)
Q Consensus 214 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 287 (558)
....+.. -+..-++....++...|.+...........+.|...- ...+..+..+|.+.++++.|+..|.+..
T Consensus 248 ~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~~ai~~~~kaL 325 (539)
T KOG0548|consen 248 AKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYEGAIKYYQKAL 325 (539)
T ss_pred HHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHHHHHHHHHHHh
Confidence 8887753 4445556666778888888777766666655542211 1122234557888889999999998854
Q ss_pred CC--CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhH
Q 036003 288 GK--DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDE-ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKH 364 (558)
Q Consensus 288 ~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 364 (558)
.. +.. ...+....++++...+...- +.|.. .-...-...+.+.|++..|...|.++... -+.|...
T Consensus 326 te~Rt~~-------~ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr--~P~Da~l 394 (539)
T KOG0548|consen 326 TEHRTPD-------LLSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKR--DPEDARL 394 (539)
T ss_pred hhhcCHH-------HHHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhc--CCchhHH
Confidence 32 211 12233345555555555444 33443 22223356678899999999999998873 4667889
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcC
Q 036003 365 YGCMVDLLGRAGRLDEAYRFIDEL-PIKST-PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAG 442 (558)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 442 (558)
|..-.-+|.+.|.+..|++=.+.. ...|+ ...|.-=..++....+++.|.+.|.+.++.+|.+......+.+++....
T Consensus 395 YsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~dp~~~e~~~~~~rc~~a~~ 474 (539)
T KOG0548|consen 395 YSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELDPSNAEAIDGYRRCVEAQR 474 (539)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHhh
Confidence 999999999999999998876665 33443 3344444556666779999999999999999988766666666555433
Q ss_pred ChHHHHHHHH
Q 036003 443 RWEDVDYLRK 452 (558)
Q Consensus 443 ~~~~A~~~~~ 452 (558)
....-.++.+
T Consensus 475 ~~~~~ee~~~ 484 (539)
T KOG0548|consen 475 GDETPEETKR 484 (539)
T ss_pred cCCCHHHHHH
Confidence 3333344443
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.67 E-value=1.5e-06 Score=79.39 Aligned_cols=182 Identities=10% Similarity=0.031 Sum_probs=110.7
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccCCC---CH---HhHHHHHHHHHHCCChHHHHHHHHHHHHCCCC-CCH-HHHH
Q 036003 259 YVKVNTALIDMHAKCGRLDDAVSVFDNMSGK---DT---QAWSAMIVAYATHGQGHKSILMFEEMMKAQVS-PDE-ITFL 330 (558)
Q Consensus 259 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~-~~~~ 330 (558)
....+-.++..+.+.|++++|...|+++... +. .++..+..++.+.|++++|+..++++.+.... |.. .++.
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 111 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAYY 111 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHHH
Confidence 3444555666677777777777777765432 11 34566667777777777777777777663211 111 1333
Q ss_pred HHHHHHHcc--------CChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHH
Q 036003 331 GLLYACSHT--------GLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLS 402 (558)
Q Consensus 331 ~ll~~~~~~--------g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~ 402 (558)
.+..++... |+.++|.+.|+.+... .+-+...+..+..... ..... ......+..
T Consensus 112 ~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~~~----~~~~~-----------~~~~~~~a~ 174 (235)
T TIGR03302 112 LRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRMDY----LRNRL-----------AGKELYVAR 174 (235)
T ss_pred HHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHHHH----HHHHH-----------HHHHHHHHH
Confidence 344444433 5566666666666642 1112222222111100 00000 001124566
Q ss_pred HHHhcCCHHHHHHHHHHHHccCCCCc---ccHHhHHHHHHhcCChHHHHHHHHHHHhC
Q 036003 403 SCSSHNNLGLAKQVIERIFELDDSHG---GDYVILSNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 403 ~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
.+...|++++|...++++++..|+++ ..+..++.+|.+.|++++|..+++.+...
T Consensus 175 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 175 FYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 78899999999999999999876653 67889999999999999999999988754
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.65 E-value=4e-06 Score=74.24 Aligned_cols=312 Identities=13% Similarity=0.085 Sum_probs=163.1
Q ss_pred CCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCC--CCcchH
Q 036003 116 SGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE--PCVVSY 193 (558)
Q Consensus 116 ~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~~~~~ 193 (558)
.|+.....-+.+++..+.+. .+++.+++++..-.+.. +.+....+.|..+|.+..++..|-..++++.. |...-|
T Consensus 4 ~g~~i~EGeftaviy~lI~d--~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qY 80 (459)
T KOG4340|consen 4 SGAQIPEGEFTAVVYRLIRD--ARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQY 80 (459)
T ss_pred ccccCCCCchHHHHHHHHHH--hhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHH
Confidence 34444445567777777776 77777777776665543 23556666677777777777777777777654 333333
Q ss_pred HH-HHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHH--HHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 036003 194 NA-IITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALS--SCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMH 270 (558)
Q Consensus 194 ~~-li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 270 (558)
.. -...+-+.+.+..|+++...|... |+...-..-+. ..-..+++..+..+.++.... -+..+.+......
T Consensus 81 rlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e---n~Ad~~in~gCll 154 (459)
T KOG4340|consen 81 RLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE---NEADGQINLGCLL 154 (459)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC---Cccchhccchhee
Confidence 21 234455667777777777666532 22111111111 112334444444444433221 1222223333334
Q ss_pred HhcCCHHHHHHHHhccCCC----CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHH
Q 036003 271 AKCGRLDDAVSVFDNMSGK----DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGW 346 (558)
Q Consensus 271 ~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 346 (558)
.+.|+++.|.+-|+...+- ....||..+ +..+.|+++.|++...+++++|++--+. ++ .|...+..
T Consensus 155 ykegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPE-lg--------IGm~tegi 224 (459)
T KOG4340|consen 155 YKEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPE-LG--------IGMTTEGI 224 (459)
T ss_pred eccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCc-cC--------ccceeccC
Confidence 4455555555555444321 223333322 2233344555555555555544431110 00 00000000
Q ss_pred HHHHHchhhcCCCCC-------hhHHHHHHHHHhhcCCHHHHHHHHHhCC----CCCCHHHHHHHHHHHHhcCCHHHHHH
Q 036003 347 NYFYSMRDKYGIVPG-------IKHYGCMVDLLGRAGRLDEAYRFIDELP----IKSTPILWRTLLSSCSSHNNLGLAKQ 415 (558)
Q Consensus 347 ~~~~~~~~~~~~~~~-------~~~~~~li~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~l~~~~~~~g~~~~a~~ 415 (558)
. .+.+ | .|- +..+|.-...+.+.|+++.|.+.+.+|| ...|++|...+.-.- ..+++.+..+
T Consensus 225 D-vrsv----g-Nt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~ 297 (459)
T KOG4340|consen 225 D-VRSV----G-NTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFE 297 (459)
T ss_pred c-hhcc----c-chHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHH
Confidence 0 0000 0 000 1122333334567899999999999994 234677776553221 2355666777
Q ss_pred HHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHH
Q 036003 416 VIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKL 453 (558)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 453 (558)
-+.-++++.|-.+.++..++-.|++..-++-|.+++-+
T Consensus 298 KLqFLL~~nPfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 298 KLQFLLQQNPFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred HHHHHHhcCCCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 77777888887788999999999998888888887754
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.64 E-value=3e-06 Score=74.33 Aligned_cols=148 Identities=8% Similarity=0.075 Sum_probs=109.7
Q ss_pred HHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCC
Q 036003 298 IVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGR 377 (558)
Q Consensus 298 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 377 (558)
+..|...|+++.+....+.+.. |. ..+...++.+++...++...+ .-+.+...|..|...|...|+
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~ 88 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRND 88 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCC
Confidence 3456777777665444322211 11 012235667777777777765 445678889999999999999
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHH-HhcCC--HHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHH
Q 036003 378 LDEAYRFIDEL-PIKS-TPILWRTLLSSC-SSHNN--LGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRK 452 (558)
Q Consensus 378 ~~~A~~~~~~~-~~~~-~~~~~~~l~~~~-~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 452 (558)
+++|...|++. ...| +...+..+..++ ...|+ .++|.++++++++.+|.++.++..++..+.+.|++++|...|+
T Consensus 89 ~~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~ 168 (198)
T PRK10370 89 YDNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQ 168 (198)
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHH
Confidence 99999999887 4444 567777777764 66676 5899999999999999999999999999999999999999999
Q ss_pred HHHhCCC
Q 036003 453 LMKDRGV 459 (558)
Q Consensus 453 ~m~~~g~ 459 (558)
++.+...
T Consensus 169 ~aL~l~~ 175 (198)
T PRK10370 169 KVLDLNS 175 (198)
T ss_pred HHHhhCC
Confidence 9877533
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.8e-05 Score=81.25 Aligned_cols=176 Identities=16% Similarity=0.106 Sum_probs=121.1
Q ss_pred HHHHHHHHHhCCCCCh-hHHHHHHHHhhcCCCCCCHHHHHHHHccCCC---CCcccHHHHHHHHhcCCCchHHHHHHHHh
Q 036003 38 KQIHAVTIKTHLQNDL-NVLTKLINFCTQNPTTSSMEHAHLLFDRIPE---PDIVLFNTMARGYSRSKTPIRAIFLFVEL 113 (558)
Q Consensus 38 ~~~~~~~~~~g~~~~~-~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m 113 (558)
..++..+....+.++. ..|..|-..|+.. .+...|.+-|++..+ .|..++......|++..+++.|..+.-..
T Consensus 476 ~al~ali~alrld~~~apaf~~LG~iYrd~---~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 476 LALHALIRALRLDVSLAPAFAFLGQIYRDS---DDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHhcccchhHHHHHHHHHHHHH---HHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 4455555555566664 5777788888888 788889999988766 46677888899999999999998873322
Q ss_pred HHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCCCCcch-
Q 036003 114 LNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVS- 192 (558)
Q Consensus 114 ~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~- 192 (558)
-+.. +.-...++.+-.+.....+++...+..-|+..++.. +-|...|..|+.+|.++|++..|.++|.+...-++..
T Consensus 553 ~qka-~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~ 630 (1238)
T KOG1127|consen 553 AQKA-PAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSK 630 (1238)
T ss_pred hhhc-hHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhH
Confidence 2211 111222333333333333388888888888888765 4578889999999999999999999998887633332
Q ss_pred HHHH--HHHHHHCCCccHHHHHHHHHHH
Q 036003 193 YNAI--ITAYARSSRPNEALSLFRELQE 218 (558)
Q Consensus 193 ~~~l--i~~~~~~g~~~~A~~~~~~m~~ 218 (558)
|... ...-+..|.+.+|+..+.....
T Consensus 631 y~~fk~A~~ecd~GkYkeald~l~~ii~ 658 (1238)
T KOG1127|consen 631 YGRFKEAVMECDNGKYKEALDALGLIIY 658 (1238)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3222 2334567889998888877654
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.61 E-value=6.7e-08 Score=57.06 Aligned_cols=33 Identities=24% Similarity=0.500 Sum_probs=26.1
Q ss_pred CCCChHHHHHHHHHHHHhCCChHHHHHHHhccC
Q 036003 154 GLNSNLYVCTTLINLYAECSDVEAARRIFENIS 186 (558)
Q Consensus 154 g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~ 186 (558)
|+.||..+||+||++|++.|++++|.++|++|+
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 677888888888888888888888888887774
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.57 E-value=0.00014 Score=66.05 Aligned_cols=331 Identities=13% Similarity=0.087 Sum_probs=203.5
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHH---HHHhcCcccHHHHHHHHHHHHHhCCCChHHHH-HHH
Q 036003 90 FNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLK---ACACVGAEALEEGKQLHCFAIKLGLNSNLYVC-TTL 165 (558)
Q Consensus 90 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~---~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~l 165 (558)
.--+...+...|++..|+.-|....+- |+..|.++.+ .|... |+-..|+.-+...++. .||-..- ---
T Consensus 41 hlElGk~lla~~Q~sDALt~yHaAve~----dp~~Y~aifrRaT~yLAm--Gksk~al~Dl~rVlel--KpDF~~ARiQR 112 (504)
T KOG0624|consen 41 HLELGKELLARGQLSDALTHYHAAVEG----DPNNYQAIFRRATVYLAM--GKSKAALQDLSRVLEL--KPDFMAARIQR 112 (504)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHcC----CchhHHHHHHHHHHHhhh--cCCccchhhHHHHHhc--CccHHHHHHHh
Confidence 344667777788888888888777652 4455555543 45555 6666677777777664 4553221 122
Q ss_pred HHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHH
Q 036003 166 INLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGK 245 (558)
Q Consensus 166 l~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~ 245 (558)
...+.+.|.++.|..-|+.+.+.+.. .|...+|..-+....+ .......+..+...|+...|+
T Consensus 113 g~vllK~Gele~A~~DF~~vl~~~~s-----------~~~~~eaqskl~~~~e------~~~l~~ql~s~~~~GD~~~ai 175 (504)
T KOG0624|consen 113 GVVLLKQGELEQAEADFDQVLQHEPS-----------NGLVLEAQSKLALIQE------HWVLVQQLKSASGSGDCQNAI 175 (504)
T ss_pred chhhhhcccHHHHHHHHHHHHhcCCC-----------cchhHHHHHHHHhHHH------HHHHHHHHHHHhcCCchhhHH
Confidence 34566778888888777776652221 0111111111100000 011222334445567777777
Q ss_pred HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhcc---CCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCC
Q 036003 246 WIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNM---SGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322 (558)
Q Consensus 246 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 322 (558)
.....+.+.. +-+...|..-..+|...|++..|+.-++.. ...+...+--+-..+...|+.+.++...++-.+ +
T Consensus 176 ~~i~~llEi~-~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--l 252 (504)
T KOG0624|consen 176 EMITHLLEIQ-PWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--L 252 (504)
T ss_pred HHHHHHHhcC-cchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--c
Confidence 7777776643 335566666677778888887777655544 344666666667777777888888777777776 5
Q ss_pred CCCHHH----HHHH---------HHHHHccCChHHHHHHHHHchhhcCCC-C--ChhHHHHHHHHHhhcCCHHHHHHHHH
Q 036003 323 SPDEIT----FLGL---------LYACSHTGLVDEGWNYFYSMRDKYGIV-P--GIKHYGCMVDLLGRAGRLDEAYRFID 386 (558)
Q Consensus 323 ~p~~~~----~~~l---------l~~~~~~g~~~~a~~~~~~~~~~~~~~-~--~~~~~~~li~~~~~~g~~~~A~~~~~ 386 (558)
.||... |..| +......+++.++.+..+...+. ... + ....+..+-.++...|++.+|++...
T Consensus 253 dpdHK~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~-ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~ 331 (504)
T KOG0624|consen 253 DPDHKLCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKN-EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCK 331 (504)
T ss_pred CcchhhHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhc-CCcccceeeeeeheeeecccccCCHHHHHHHHH
Confidence 566532 2111 11234567777788777777753 211 1 12345566778888999999999988
Q ss_pred hC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhCCC
Q 036003 387 EL-PIKST-PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGV 459 (558)
Q Consensus 387 ~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 459 (558)
+. ...|+ +.++..-..+|.-...++.|+.-|+++.+.++++..+- .| .+.|.++.+...+++.
T Consensus 332 evL~~d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~~r---------eG-le~Akrlkkqs~kRDY 396 (504)
T KOG0624|consen 332 EVLDIDPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELNESNTRAR---------EG-LERAKRLKKQSGKRDY 396 (504)
T ss_pred HHHhcCchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcccHHHH---------HH-HHHHHHHHHHhccchH
Confidence 86 55565 67888888899999999999999999999998874332 22 3555555555544433
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.55 E-value=2.5e-06 Score=70.75 Aligned_cols=108 Identities=11% Similarity=-0.029 Sum_probs=67.8
Q ss_pred HHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 036003 329 FLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSS 406 (558)
Q Consensus 329 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~ 406 (558)
+..+...+...|++++|...|+.... --+.+...|..+..++.+.|++++|...|++. ...| +...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVM--AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHH
Confidence 33445556666777777777766654 22335566666666677777777777777665 2233 45666666667777
Q ss_pred cCCHHHHHHHHHHHHccCCCCcccHHhHHHHH
Q 036003 407 HNNLGLAKQVIERIFELDDSHGGDYVILSNLC 438 (558)
Q Consensus 407 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 438 (558)
.|++++|...|+++++..|.++..+.....+.
T Consensus 105 ~g~~~eAi~~~~~Al~~~p~~~~~~~~~~~~~ 136 (144)
T PRK15359 105 MGEPGLAREAFQTAIKMSYADASWSEIRQNAQ 136 (144)
T ss_pred cCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 77777777777777777777666665544443
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.55 E-value=1.3e-05 Score=79.65 Aligned_cols=217 Identities=12% Similarity=0.096 Sum_probs=176.3
Q ss_pred CCCChHHHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036003 154 GLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALS 233 (558)
Q Consensus 154 g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 233 (558)
+++|--..-..+...+...|-...|..+|+++ ..|.-.|.+|...|+..+|..+..+-.+. +||...|-.+..
T Consensus 393 ~lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~lek--~~d~~lyc~LGD 465 (777)
T KOG1128|consen 393 HLPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELEK--DPDPRLYCLLGD 465 (777)
T ss_pred CCCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhcC--CCcchhHHHhhh
Confidence 34666666777888999999999999999986 46777899999999999999999888773 789999988888
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC---CHHhHHHHHHHHHHCCChHHH
Q 036003 234 SCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK---DTQAWSAMIVAYATHGQGHKS 310 (558)
Q Consensus 234 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a 310 (558)
......-+++|.++.+..-.. .-..+.....+.++++++.+.|+.-.+. -..+|-....+..+.+++..|
T Consensus 466 v~~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~a 538 (777)
T KOG1128|consen 466 VLHDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAA 538 (777)
T ss_pred hccChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHH
Confidence 877777788888887765432 1122333344578999999999875543 567888888899999999999
Q ss_pred HHHHHHHHHCCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 036003 311 ILMFEEMMKAQVSPDE-ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL 388 (558)
Q Consensus 311 ~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 388 (558)
.+.|..-.. ..||. ..|+.+-.+|.+.++..+|...+.+..+- + .-+...|...+....+.|.+++|.+.+.++
T Consensus 539 v~aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n-~~~w~iWENymlvsvdvge~eda~~A~~rl 613 (777)
T KOG1128|consen 539 VKAFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-N-YQHWQIWENYMLVSVDVGEFEDAIKAYHRL 613 (777)
T ss_pred HHHHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-C-CCCCeeeechhhhhhhcccHHHHHHHHHHH
Confidence 999998887 56765 68999999999999999999999999873 5 556677888888889999999999999887
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.52 E-value=1.7e-07 Score=55.30 Aligned_cols=32 Identities=38% Similarity=0.758 Sum_probs=17.5
Q ss_pred CCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 036003 357 GIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL 388 (558)
Q Consensus 357 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 388 (558)
|+.||..+|++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555554
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.51 E-value=3e-05 Score=82.39 Aligned_cols=224 Identities=11% Similarity=0.167 Sum_probs=161.0
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHh-CCC---CchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-C-HHhHHHH
Q 036003 224 TDVTMLSALSSCALLGSLDLGKWIHEYIKKY-GLD---KYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK-D-TQAWSAM 297 (558)
Q Consensus 224 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~l 297 (558)
....|..-|....+.++.++|+++.+++... ++. .-..+|.++++.-..-|.-+...++|+++.+- | ...|..|
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqycd~~~V~~~L 1536 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYCDAYTVHLKL 1536 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhcchHHHHHHH
Confidence 4456667777777888888888888887653 221 12346677777777777778888888888754 3 3457888
Q ss_pred HHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCC--ChhHHHHHHHHHhhc
Q 036003 298 IVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVP--GIKHYGCMVDLLGRA 375 (558)
Q Consensus 298 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~~~li~~~~~~ 375 (558)
...|.+.+.+++|.++|+.|.+. +.-....|...+..+.+..+-+.|..++.+..+ .++. ......-.+..-.+.
T Consensus 1537 ~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~--~lPk~eHv~~IskfAqLEFk~ 1613 (1710)
T KOG1070|consen 1537 LGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALK--SLPKQEHVEFISKFAQLEFKY 1613 (1710)
T ss_pred HHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHh--hcchhhhHHHHHHHHHHHhhc
Confidence 88899999999999999999875 334556788888888888888899999988886 3332 345555666777788
Q ss_pred CCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccC--CCCcc-cHHhHHHHHHhcCChHHHHHH
Q 036003 376 GRLDEAYRFIDEL--PIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD--DSHGG-DYVILSNLCARAGRWEDVDYL 450 (558)
Q Consensus 376 g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~-~~~~l~~~~~~~g~~~~A~~~ 450 (558)
|+.+++..+|+.. ..+.....|+.+++.-.++|+.+.+..+|++++.+. |.... .|.-++..-...|+-+.+..+
T Consensus 1614 GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1614 GDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred CCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHHHHHHHhcCchhhHHHH
Confidence 9999999999887 222355789999999999999999999999998877 22222 344555544455554444433
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.51 E-value=2.7e-05 Score=75.51 Aligned_cols=245 Identities=15% Similarity=0.137 Sum_probs=168.7
Q ss_pred HHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCC---CCcchHHHHHHHHHHCCCcc
Q 036003 131 ACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE---PCVVSYNAIITAYARSSRPN 207 (558)
Q Consensus 131 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~ 207 (558)
+|....+|++.+|.-.|+..++.. +-+...|..|.......++-..|+..+.+..+ .|....-+|.-.|...|.-.
T Consensus 292 G~~lm~nG~L~~A~LafEAAVkqd-P~haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~ 370 (579)
T KOG1125|consen 292 GCNLMKNGDLSEAALAFEAAVKQD-PQHAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQN 370 (579)
T ss_pred HHHHHhcCCchHHHHHHHHHHhhC-hHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHH
Confidence 333333488999999999888875 55788898888888888888888888888876 35556677777888889888
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHH-----------HHHhccCChHHHHHHHHHH-HHhCCCCchhHHHHHHHHHHhcCC
Q 036003 208 EALSLFRELQERNLKPTDVTMLSAL-----------SSCALLGSLDLGKWIHEYI-KKYGLDKYVKVNTALIDMHAKCGR 275 (558)
Q Consensus 208 ~A~~~~~~m~~~~~~p~~~~~~~ll-----------~~~~~~~~~~~a~~~~~~~-~~~~~~~~~~~~~~l~~~~~~~g~ 275 (558)
.|+..|+..+... |. |..+. ..+.....+....++|-.+ ...+..+|..++..|.-.|--.|+
T Consensus 371 ~Al~~L~~Wi~~~--p~---y~~l~~a~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~e 445 (579)
T KOG1125|consen 371 QALKMLDKWIRNK--PK---YVHLVSAGENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGE 445 (579)
T ss_pred HHHHHHHHHHHhC--cc---chhccccCccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchH
Confidence 9999888875542 11 00000 1111122233444444444 445555788888889888999999
Q ss_pred HHHHHHHHhccCC--C-CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCChHHHHHHHHH
Q 036003 276 LDDAVSVFDNMSG--K-DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDE-ITFLGLLYACSHTGLVDEGWNYFYS 351 (558)
Q Consensus 276 ~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~ 351 (558)
+++|...|+.... | |...||.|...++...+..+|+..|++.++ ++|+- .....|.-+|...|.+++|...|-.
T Consensus 446 fdraiDcf~~AL~v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALq--LqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~ 523 (579)
T KOG1125|consen 446 FDRAVDCFEAALQVKPNDYLLWNRLGATLANGNRSEEAISAYNRALQ--LQPGYVRVRYNLGISCMNLGAYKEAVKHLLE 523 (579)
T ss_pred HHHHHHHHHHHHhcCCchHHHHHHhhHHhcCCcccHHHHHHHHHHHh--cCCCeeeeehhhhhhhhhhhhHHHHHHHHHH
Confidence 9999999988753 3 778899999999999999999999999988 67775 3344555578889999998888766
Q ss_pred chhhcC--------CCCChhHHHHHHHHHhhcCCHHHHHH
Q 036003 352 MRDKYG--------IVPGIKHYGCMVDLLGRAGRLDEAYR 383 (558)
Q Consensus 352 ~~~~~~--------~~~~~~~~~~li~~~~~~g~~~~A~~ 383 (558)
...-.. ..++...|..|=.++.-.++.|-+.+
T Consensus 524 AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~ 563 (579)
T KOG1125|consen 524 ALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQE 563 (579)
T ss_pred HHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHH
Confidence 553210 11123456555555555555554433
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=98.50 E-value=2.7e-06 Score=70.60 Aligned_cols=107 Identities=10% Similarity=-0.097 Sum_probs=91.5
Q ss_pred HHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccC
Q 036003 347 NYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELD 424 (558)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 424 (558)
.++++..+ +.|+ .+..+...+...|++++|...|+.. ...| +...|..+..++...|++++|...|+++++.+
T Consensus 14 ~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 44555543 3344 4556788899999999999999987 4444 67889999999999999999999999999999
Q ss_pred CCCcccHHhHHHHHHhcCChHHHHHHHHHHHhCC
Q 036003 425 DSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRG 458 (558)
Q Consensus 425 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 458 (558)
|.++.++..++.++...|++++|...|++..+..
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~ 122 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMS 122 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999987744
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.50 E-value=0.00085 Score=69.49 Aligned_cols=340 Identities=11% Similarity=0.057 Sum_probs=233.8
Q ss_pred HHhccCCchHHHHHHHHHHhCCCCCh-----hHHHHHHHHhhcCCCCCCHHHHHHHHccCCCCCcccHHHHHHHHhcCCC
Q 036003 28 LPRCTSFRGLKQIHAVTIKTHLQNDL-----NVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKT 102 (558)
Q Consensus 28 l~~~~~~~~~~~~~~~~~~~g~~~~~-----~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~ 102 (558)
.+++...+-.-++.+.+.+.-+.|++ ...|.||-.-.+. +.....+..+++..-|.. .+......++-
T Consensus 991 VkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika----d~trVm~YI~rLdnyDa~---~ia~iai~~~L 1063 (1666)
T KOG0985|consen 991 VKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA----DRTRVMEYINRLDNYDAP---DIAEIAIENQL 1063 (1666)
T ss_pred HHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc----ChHHHHHHHHHhccCCch---hHHHHHhhhhH
Confidence 44443333334555555554455554 4555566555554 444555555555443322 23455566777
Q ss_pred chHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHH
Q 036003 103 PIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIF 182 (558)
Q Consensus 103 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~ 182 (558)
+++|..+|++.- .+....+.|+.-. ++++.|.++-++.. .+.+|..+..+-.+.|.+.+|.+-|
T Consensus 1064 yEEAF~ifkkf~-----~n~~A~~VLie~i-----~~ldRA~efAe~~n------~p~vWsqlakAQL~~~~v~dAieSy 1127 (1666)
T KOG0985|consen 1064 YEEAFAIFKKFD-----MNVSAIQVLIENI-----GSLDRAYEFAERCN------EPAVWSQLAKAQLQGGLVKDAIESY 1127 (1666)
T ss_pred HHHHHHHHHHhc-----ccHHHHHHHHHHh-----hhHHHHHHHHHhhC------ChHHHHHHHHHHHhcCchHHHHHHH
Confidence 899999998753 3555666666655 77888887766542 4678999999999999999999888
Q ss_pred hccCCCCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhH
Q 036003 183 ENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262 (558)
Q Consensus 183 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 262 (558)
=+. .|+..|...+....+.|.+++-.+.+....+..-.|... ..++-+|++.+++.+-+.++ ..||...
T Consensus 1128 ika--dDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id--~eLi~AyAkt~rl~elE~fi-------~gpN~A~ 1196 (1666)
T KOG0985|consen 1128 IKA--DDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID--SELIFAYAKTNRLTELEEFI-------AGPNVAN 1196 (1666)
T ss_pred Hhc--CCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch--HHHHHHHHHhchHHHHHHHh-------cCCCchh
Confidence 554 577789999999999999999999998777776666554 46788999999987766654 3577777
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh
Q 036003 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLV 342 (558)
Q Consensus 263 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 342 (558)
...+.+-+...|.++.|.-+|.. +..|..|...+...|++..|...-++. .+..||..+-.+|...+.+
T Consensus 1197 i~~vGdrcf~~~~y~aAkl~y~~-----vSN~a~La~TLV~LgeyQ~AVD~aRKA------ns~ktWK~VcfaCvd~~EF 1265 (1666)
T KOG0985|consen 1197 IQQVGDRCFEEKMYEAAKLLYSN-----VSNFAKLASTLVYLGEYQGAVDAARKA------NSTKTWKEVCFACVDKEEF 1265 (1666)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHH-----hhhHHHHHHHHHHHHHHHHHHHHhhhc------cchhHHHHHHHHHhchhhh
Confidence 78889999999999999888774 456888888899999999888776653 2567888888888887776
Q ss_pred HHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036003 343 DEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIK-STPILWRTLLSSCSSHNNLGLAKQVIER 419 (558)
Q Consensus 343 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 419 (558)
.-|. |.. .++.....-..-|+..|...|.+++-+.+++.. +.. .....|+-|.-.|++- ++++..+.++-
T Consensus 1266 rlAQ-----iCG-L~iivhadeLeeli~~Yq~rGyFeElIsl~Ea~LGLERAHMgmfTELaiLYsky-kp~km~EHl~L 1337 (1666)
T KOG0985|consen 1266 RLAQ-----ICG-LNIIVHADELEELIEYYQDRGYFEELISLLEAGLGLERAHMGMFTELAILYSKY-KPEKMMEHLKL 1337 (1666)
T ss_pred hHHH-----hcC-ceEEEehHhHHHHHHHHHhcCcHHHHHHHHHhhhchhHHHHHHHHHHHHHHHhc-CHHHHHHHHHH
Confidence 5443 221 123345556777888888899999888888875 322 2344555555555443 33333333333
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.50 E-value=3.7e-05 Score=72.58 Aligned_cols=144 Identities=10% Similarity=0.072 Sum_probs=75.3
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhc---CC----HHHH
Q 036003 309 KSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRA---GR----LDEA 381 (558)
Q Consensus 309 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~----~~~A 381 (558)
+++.+++++.+... -|...|....-++...|+++++++.+.++.+. -+.+...|+.....+.+. |. .+++
T Consensus 126 ~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~--d~~N~sAW~~R~~vl~~~~~l~~~~~~~e~e 202 (320)
T PLN02789 126 KELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEE--DVRNNSAWNQRYFVITRSPLLGGLEAMRDSE 202 (320)
T ss_pred HHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHH--CCCchhHHHHHHHHHHhccccccccccHHHH
Confidence 34444444444221 13344444444444445555555555555432 122233333333322222 11 2344
Q ss_pred HHHHHhC-CCCC-CHHHHHHHHHHHHhc----CCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcC-------------
Q 036003 382 YRFIDEL-PIKS-TPILWRTLLSSCSSH----NNLGLAKQVIERIFELDDSHGGDYVILSNLCARAG------------- 442 (558)
Q Consensus 382 ~~~~~~~-~~~~-~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g------------- 442 (558)
.++..++ ...| |...|+.+...+... ++..+|.+.+.++.+.+|.++.++..|++.|+...
T Consensus 203 l~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~ 282 (320)
T PLN02789 203 LKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTL 282 (320)
T ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhcc
Confidence 4444333 3333 456676666666552 34566778888877777887788888888887632
Q ss_pred -----ChHHHHHHHHHHH
Q 036003 443 -----RWEDVDYLRKLMK 455 (558)
Q Consensus 443 -----~~~~A~~~~~~m~ 455 (558)
..++|.++++.+.
T Consensus 283 ~~~~~~~~~a~~~~~~l~ 300 (320)
T PLN02789 283 AEELSDSTLAQAVCSELE 300 (320)
T ss_pred ccccccHHHHHHHHHHHH
Confidence 2366888888773
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.46 E-value=2.2e-05 Score=68.90 Aligned_cols=155 Identities=9% Similarity=0.099 Sum_probs=114.6
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHH
Q 036003 267 IDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGW 346 (558)
Q Consensus 267 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 346 (558)
+..|...|+++.+....+.+..+. ..|...++.++++..+++..+.. +.|...|..+...|...|++++|.
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~--------~~~~~~~~~~~~i~~l~~~L~~~-P~~~~~w~~Lg~~~~~~g~~~~A~ 93 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPL--------HQFASQQTPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWRNDYDNAL 93 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCcc--------ccccCchhHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 456777788777655543332221 01223566778888888877743 346778888889999999999999
Q ss_pred HHHHHchhhcCCCCChhHHHHHHHHH-hhcCC--HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036003 347 NYFYSMRDKYGIVPGIKHYGCMVDLL-GRAGR--LDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIF 421 (558)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~li~~~-~~~g~--~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 421 (558)
..|++..+ -.+.+...+..+..++ ...|+ .++|.+++++. ...| +...+..+...+...|++++|...|++++
T Consensus 94 ~a~~~Al~--l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL 171 (198)
T PRK10370 94 LAYRQALQ--LRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVL 171 (198)
T ss_pred HHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 99998886 3344677888888864 67777 58999999987 4344 66788889999999999999999999999
Q ss_pred ccCCCCcccHH
Q 036003 422 ELDDSHGGDYV 432 (558)
Q Consensus 422 ~~~~~~~~~~~ 432 (558)
+..|++..-+.
T Consensus 172 ~l~~~~~~r~~ 182 (198)
T PRK10370 172 DLNSPRVNRTQ 182 (198)
T ss_pred hhCCCCccHHH
Confidence 99988765443
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.46 E-value=0.00018 Score=63.24 Aligned_cols=154 Identities=12% Similarity=0.086 Sum_probs=75.9
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCCh
Q 036003 267 IDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSH----TGLV 342 (558)
Q Consensus 267 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~ 342 (558)
...|+..|++++|++.......-+... .=+..+.+..+++-|.+.+++|.+- -+..|.+.|..++.+ .+.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~~lE~~A--l~VqI~lk~~r~d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~ 189 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGENLEAAA--LNVQILLKMHRFDLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKI 189 (299)
T ss_pred hHHhhcCCChHHHHHHHhccchHHHHH--HHHHHHHHHHHHHHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhh
Confidence 344666666666666665522222222 2233344555566666666666552 144555555544432 2345
Q ss_pred HHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCH-HHHHHHHHH
Q 036003 343 DEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL--PIKSTPILWRTLLSSCSSHNNL-GLAKQVIER 419 (558)
Q Consensus 343 ~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~ 419 (558)
.+|.-+|+++.+ ..+|+..+.+-...++...|++++|..++++. +...++.+...++..-...|.. +-..+.+.+
T Consensus 190 qdAfyifeE~s~--k~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~Q 267 (299)
T KOG3081|consen 190 QDAFYIFEELSE--KTPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQ 267 (299)
T ss_pred hhHHHHHHHHhc--ccCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 556666666654 34455555555555555556666666555554 2223444444444444444433 223344444
Q ss_pred HHccCCCC
Q 036003 420 IFELDDSH 427 (558)
Q Consensus 420 ~~~~~~~~ 427 (558)
.....|.+
T Consensus 268 Lk~~~p~h 275 (299)
T KOG3081|consen 268 LKLSHPEH 275 (299)
T ss_pred HHhcCCcc
Confidence 44444443
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.44 E-value=5.3e-05 Score=79.75 Aligned_cols=233 Identities=11% Similarity=0.050 Sum_probs=112.6
Q ss_pred hHHHHHHHHHHHHhCCChHHHHHHHhccCC--CCc-chHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036003 158 NLYVCTTLINLYAECSDVEAARRIFENISE--PCV-VSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSS 234 (558)
Q Consensus 158 ~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~~-~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~ 234 (558)
+...+..|+..|...+++++|.++.+...+ |+. ..|..+...+.+.++..++..+ . ++..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv--~---------------~l~~ 92 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL--N---------------LIDS 92 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh--h---------------hhhh
Confidence 345556666666666666666666664443 322 2233333345555554443333 1 1222
Q ss_pred HhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC---CHHhHHHHHHHHHHCCChHHHH
Q 036003 235 CALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK---DTQAWSAMIVAYATHGQGHKSI 311 (558)
Q Consensus 235 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~ 311 (558)
.....++.....+...+.+.+ .+...+..+..+|-+.|+.++|.++++++.+- |+.+.|.+...|+.. +.++|+
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D~~n~~aLNn~AY~~ae~-dL~KA~ 169 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKADRDNPEIVKKLATSYEEE-DKEKAI 169 (906)
T ss_pred cccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHh-hHHHHH
Confidence 222223323333333333321 22224444556666666666666666655432 455556666666655 666666
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCC
Q 036003 312 LMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIK 391 (558)
Q Consensus 312 ~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~ 391 (558)
.++.+.... +...+++..+.++|.++.. ..+.+...+..+.+..... .+..
T Consensus 170 ~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~--~~~~d~d~f~~i~~ki~~~------------~~~~ 220 (906)
T PRK14720 170 TYLKKAIYR---------------FIKKKQYVGIEEIWSKLVH--YNSDDFDFFLRIERKVLGH------------REFT 220 (906)
T ss_pred HHHHHHHHH---------------HHhhhcchHHHHHHHHHHh--cCcccchHHHHHHHHHHhh------------hccc
Confidence 666555442 3344455566666666654 2222222222222221111 0111
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHH
Q 036003 392 STPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCA 439 (558)
Q Consensus 392 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 439 (558)
.-..++..+-..|...++++++..+++.+++.+|.|..+..-++.+|.
T Consensus 221 ~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 221 RLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 223344445555666666666666666666666666666666666554
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.0021 Score=62.27 Aligned_cols=158 Identities=10% Similarity=0.092 Sum_probs=101.9
Q ss_pred HhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHH
Q 036003 292 QAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP-DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVD 370 (558)
Q Consensus 292 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 370 (558)
.+|-..+..-.+..-...|..+|.+..+.+..+ .+..+++++.-+| .++...|.++|+.-.+++| .+..--...++
T Consensus 367 Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c-skD~~~AfrIFeLGLkkf~--d~p~yv~~Yld 443 (656)
T KOG1914|consen 367 LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC-SKDKETAFRIFELGLKKFG--DSPEYVLKYLD 443 (656)
T ss_pred eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh-cCChhHHHHHHHHHHHhcC--CChHHHHHHHH
Confidence 356666666667777777888888888777666 5566666666555 4667778888877776433 33344456677
Q ss_pred HHhhcCCHHHHHHHHHhC-C--CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC----cccHHhHHHHHHhc
Q 036003 371 LLGRAGRLDEAYRFIDEL-P--IKST--PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH----GGDYVILSNLCARA 441 (558)
Q Consensus 371 ~~~~~g~~~~A~~~~~~~-~--~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~l~~~~~~~ 441 (558)
-+...++-..|..+|++. + ..++ ...|..++.--...|+...+.++-++....-|.+ ...-..+++-|.-.
T Consensus 444 fL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~~~qe~~~~~~~~~v~RY~~~ 523 (656)
T KOG1914|consen 444 FLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFPADQEYEGNETALFVDRYGIL 523 (656)
T ss_pred HHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcchhhcCCCChHHHHHHHHhhc
Confidence 777777777788888776 2 2333 3678888887788888888887777766544411 12344556666666
Q ss_pred CChHHHHHHHH
Q 036003 442 GRWEDVDYLRK 452 (558)
Q Consensus 442 g~~~~A~~~~~ 452 (558)
+.+..-..-++
T Consensus 524 d~~~c~~~elk 534 (656)
T KOG1914|consen 524 DLYPCSLDELK 534 (656)
T ss_pred ccccccHHHHH
Confidence 65544433333
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.42 E-value=3.5e-05 Score=67.54 Aligned_cols=155 Identities=14% Similarity=0.108 Sum_probs=112.0
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhh
Q 036003 295 SAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR 374 (558)
Q Consensus 295 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~ 374 (558)
..+-..+...|+-+....+....... ..-|.......+....+.|++..|...+++... .-++|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 44555666667777766666664432 112334444577777788888888888888875 667778888888888888
Q ss_pred cCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHH
Q 036003 375 AGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRK 452 (558)
Q Consensus 375 ~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 452 (558)
.|+++.|..-|.+. ...| ++...+.+.-.+.-.|+.+.|..++.......+.+..+-..|..+....|++++|.++..
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 88888887777765 3333 456777777788888888888888888888777777777888888888888888877754
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.41 E-value=7.5e-05 Score=75.23 Aligned_cols=76 Identities=8% Similarity=0.090 Sum_probs=48.6
Q ss_pred HHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcC
Q 036003 297 MIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAG 376 (558)
Q Consensus 297 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 376 (558)
...-+-..|+.+.|+.+|....+ |-++++..|-.|+.++|-++-++-. |....-.|.+.|...|
T Consensus 918 WgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~esg-------d~AAcYhlaR~YEn~g 981 (1416)
T KOG3617|consen 918 WGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEESG-------DKAACYHLARMYENDG 981 (1416)
T ss_pred HHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhcc-------cHHHHHHHHHHhhhhH
Confidence 34444456667777776665543 4455556666777777776654432 4445556777888888
Q ss_pred CHHHHHHHHHhC
Q 036003 377 RLDEAYRFIDEL 388 (558)
Q Consensus 377 ~~~~A~~~~~~~ 388 (558)
++.+|..+|.+.
T Consensus 982 ~v~~Av~FfTrA 993 (1416)
T KOG3617|consen 982 DVVKAVKFFTRA 993 (1416)
T ss_pred HHHHHHHHHHHH
Confidence 888888887765
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.41 E-value=2.6e-05 Score=71.30 Aligned_cols=182 Identities=10% Similarity=-0.008 Sum_probs=127.7
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCC-C-chhHHHHHHHHHHhcCCHHHHHHHHhccCCC---CH---HhH
Q 036003 223 PTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLD-K-YVKVNTALIDMHAKCGRLDDAVSVFDNMSGK---DT---QAW 294 (558)
Q Consensus 223 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~---~~~ 294 (558)
.....+..+...+...|+++.|...++++...... + ....+..+..+|.+.|++++|...|+.+.+. +. .++
T Consensus 31 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 110 (235)
T TIGR03302 31 WPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYAY 110 (235)
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHHH
Confidence 35567778888899999999999999999876422 1 1245677889999999999999999998643 22 245
Q ss_pred HHHHHHHHHC--------CChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHH
Q 036003 295 SAMIVAYATH--------GQGHKSILMFEEMMKAQVSPDEI-TFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHY 365 (558)
Q Consensus 295 ~~li~~~~~~--------~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 365 (558)
..+..++.+. |++++|.+.|+++.+. .|+.. ....+... .. .. .... ...
T Consensus 111 ~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~a~~~~-~~---~~------~~~~---------~~~ 169 (235)
T TIGR03302 111 YLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR--YPNSEYAPDAKKRM-DY---LR------NRLA---------GKE 169 (235)
T ss_pred HHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH--CCCChhHHHHHHHH-HH---HH------HHHH---------HHH
Confidence 6666666655 7789999999999874 45432 22221111 00 00 0000 112
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCC
Q 036003 366 GCMVDLLGRAGRLDEAYRFIDEL----PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDD 425 (558)
Q Consensus 366 ~~li~~~~~~g~~~~A~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 425 (558)
..+...|.+.|++++|...+++. +..| ....+..+..++...|++++|..+++.+....|
T Consensus 170 ~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 170 LYVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 25667788999999999998887 2223 346788899999999999999998888776554
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.39 E-value=6.8e-05 Score=78.15 Aligned_cols=126 Identities=12% Similarity=0.047 Sum_probs=57.5
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccCC--C-CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 036003 259 YVKVNTALIDMHAKCGRLDDAVSVFDNMSG--K-DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPD-EITFLGLLY 334 (558)
Q Consensus 259 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~ 334 (558)
+...+-.|..+..+.|++++|+.+++...+ | +...+..++..+.+.+++++|+..+++.... .|+ ......+..
T Consensus 85 ~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~--~p~~~~~~~~~a~ 162 (694)
T PRK15179 85 TELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG--GSSSAREILLEAK 162 (694)
T ss_pred cHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc--CCCCHHHHHHHHH
Confidence 344444444555555555555555554432 1 3334444444555555555555555554442 222 233333444
Q ss_pred HHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 036003 335 ACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL 388 (558)
Q Consensus 335 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 388 (558)
++.+.|++++|..+|+++.. ..+-+...+..+..++-+.|+.++|...|++.
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~--~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a 214 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSR--QHPEFENGYVGWAQSLTRRGALWRARDVLQAG 214 (694)
T ss_pred HHHHhcchHHHHHHHHHHHh--cCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44445555555555555543 11222344444444455555555555555444
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.39 E-value=0.00032 Score=66.33 Aligned_cols=202 Identities=14% Similarity=0.108 Sum_probs=121.1
Q ss_pred HHHHCCCccHHHHHHHHHHHCCCCCCH-HHHHHHHHHHhccC-ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 036003 199 AYARSSRPNEALSLFRELQERNLKPTD-VTMLSALSSCALLG-SLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRL 276 (558)
Q Consensus 199 ~~~~~g~~~~A~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 276 (558)
.+...++.++|+.++.++++. .|+. ..|+..-.++...| ++++++..++++.+.. +.+..+|+....++.+.|+.
T Consensus 46 ~l~~~e~serAL~lt~~aI~l--nP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 46 VYASDERSPRALDLTADVIRL--NPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHcCCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHHHcCch
Confidence 345566777777777777664 3433 34444444444555 4677777777777654 33344555444444555542
Q ss_pred --HHHHHHHhccCC---CCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc---CCh----HH
Q 036003 277 --DDAVSVFDNMSG---KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHT---GLV----DE 344 (558)
Q Consensus 277 --~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~---g~~----~~ 344 (558)
+++..+++.+.+ +|..+|+...-++...|+++++++.++++++.+.. |...|+.....+.+. |.. ++
T Consensus 123 ~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~~~~e~ 201 (320)
T PLN02789 123 AANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLEAMRDS 201 (320)
T ss_pred hhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhccccccccccHHH
Confidence 556666666543 36777887777777888888888888888876543 444555444444333 222 35
Q ss_pred HHHHHHHchhhcCCCCChhHHHHHHHHHhhc----CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 036003 345 GWNYFYSMRDKYGIVPGIKHYGCMVDLLGRA----GRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSS 406 (558)
Q Consensus 345 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~ 406 (558)
..++..++.. ..+-|...|+.+...+... ++..+|.+++.+. ...| +......|+..|+.
T Consensus 202 el~y~~~aI~--~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~~s~~al~~l~d~~~~ 267 (320)
T PLN02789 202 ELKYTIDAIL--ANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDSNHVFALSDLLDLLCE 267 (320)
T ss_pred HHHHHHHHHH--hCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccCCcHHHHHHHHHHHHh
Confidence 5666655554 3344667777777777662 3445677777765 3233 45666777777765
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=4e-05 Score=79.85 Aligned_cols=212 Identities=9% Similarity=0.015 Sum_probs=149.6
Q ss_pred CHHHHHHHHHHHhccCChHHH-HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHHhHHHHHH
Q 036003 224 TDVTMLSALSSCALLGSLDLG-KWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS---GKDTQAWSAMIV 299 (558)
Q Consensus 224 ~~~~~~~ll~~~~~~~~~~~a-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~ 299 (558)
++.....+=.+.+..|.-++| .+++.++.+ ++....+.....+++.-..... ..++..+-.|..
T Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~La~ 94 (694)
T PRK15179 27 GPTILDLLEAALAEPGESEEAGRELLQQARQ------------VLERHAAVHKPAAALPELLDYVRRYPHTELFQVLVAR 94 (694)
T ss_pred CcHHHhHHHHHhcCcccchhHHHHHHHHHHH------------HHHHhhhhcchHhhHHHHHHHHHhccccHHHHHHHHH
Confidence 334444444556667776666 445554433 3333333322222222222211 125788889999
Q ss_pred HHHHCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCH
Q 036003 300 AYATHGQGHKSILMFEEMMKAQVSPDE-ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRL 378 (558)
Q Consensus 300 ~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 378 (558)
...+.|++++|..+++...+ +.|+. .....+...+.+.+++++|....++... .-+.+......+..++.+.|++
T Consensus 95 i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~--~~p~~~~~~~~~a~~l~~~g~~ 170 (694)
T PRK15179 95 ALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFS--GGSSSAREILLEAKSWDEIGQS 170 (694)
T ss_pred HHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhh--cCCCCHHHHHHHHHHHHHhcch
Confidence 99999999999999999998 56765 5667778889999999999999999986 4455677788888999999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 379 DEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 379 ~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
++|..+|+++ ...| +..++..+..++...|+.++|...|+++++...+....|+.++ ++...-..+++++.-
T Consensus 171 ~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~ 244 (694)
T PRK15179 171 EQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTRRL------VDLNADLAALRRLGV 244 (694)
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHHHH------HHHHHHHHHHHHcCc
Confidence 9999999998 2234 4688999999999999999999999999988755545555443 234444556666643
Q ss_pred C
Q 036003 457 R 457 (558)
Q Consensus 457 ~ 457 (558)
.
T Consensus 245 ~ 245 (694)
T PRK15179 245 E 245 (694)
T ss_pred c
Confidence 3
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.34 E-value=0.00024 Score=67.88 Aligned_cols=117 Identities=15% Similarity=0.122 Sum_probs=76.9
Q ss_pred HHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHH
Q 036003 336 CSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKST-PILWRTLLSSCSSHNNLGLA 413 (558)
Q Consensus 336 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a 413 (558)
+...|.++.|+..+..+.. ..+.|+..+....+.+.+.++..+|.+.++++ ...|+ ...+-.+..++.+.|++.+|
T Consensus 316 ~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~ea 393 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQEA 393 (484)
T ss_pred HHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHHH
Confidence 3455677777777777665 44455555666667777777777777777766 34454 45556666777777777777
Q ss_pred HHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHH
Q 036003 414 KQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLM 454 (558)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 454 (558)
++++++....+|.++..|..|..+|...|+..+|.....++
T Consensus 394 i~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~ 434 (484)
T COG4783 394 IRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEG 434 (484)
T ss_pred HHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHH
Confidence 77777777777777777777777777666665555544433
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=98.33 E-value=1.3e-05 Score=65.41 Aligned_cols=96 Identities=11% Similarity=-0.011 Sum_probs=84.7
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHH
Q 036003 361 GIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLC 438 (558)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 438 (558)
+....-.+...+...|++++|.++|+-+ ...| +..-|..|..++...|++++|+..|.++..++|+++.++..++.+|
T Consensus 34 ~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~ 113 (157)
T PRK15363 34 PLNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECY 113 (157)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 3445556677788999999999999987 4444 5678889999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHh
Q 036003 439 ARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 439 ~~~g~~~~A~~~~~~m~~ 456 (558)
...|+.+.|.+.|+....
T Consensus 114 L~lG~~~~A~~aF~~Ai~ 131 (157)
T PRK15363 114 LACDNVCYAIKALKAVVR 131 (157)
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 999999999999998876
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.0038 Score=60.61 Aligned_cols=397 Identities=15% Similarity=0.146 Sum_probs=225.8
Q ss_pred CCCChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCC--C-CcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccH
Q 036003 49 LQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE--P-DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSF 125 (558)
Q Consensus 49 ~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~ 125 (558)
-+-|+.+|+.||.-+.. ..+++++..++.+.. | ....|..-|+.-.+.++++....+|.+.+..-. +...|
T Consensus 16 nP~di~sw~~lire~qt----~~~~~~R~~YEq~~~~FP~s~r~W~~yi~~El~skdfe~VEkLF~RCLvkvL--nlDLW 89 (656)
T KOG1914|consen 16 NPYDIDSWSQLIREAQT----QPIDKVRETYEQLVNVFPSSPRAWKLYIERELASKDFESVEKLFSRCLVKVL--NLDLW 89 (656)
T ss_pred CCccHHHHHHHHHHHcc----CCHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHh--hHhHH
Confidence 35678899999987765 478999999998865 3 556788899999999999999999999876533 45566
Q ss_pred HHHHHHHHhcCcccHHH----HHHHHHHHH-HhCCCC-hHHHHHHHHHH---------HHhCCChHHHHHHHhccCC-C-
Q 036003 126 PSLLKACACVGAEALEE----GKQLHCFAI-KLGLNS-NLYVCTTLINL---------YAECSDVEAARRIFENISE-P- 188 (558)
Q Consensus 126 ~~ll~~~~~~~~~~~~~----a~~~~~~~~-~~g~~~-~~~~~~~ll~~---------~~~~g~~~~A~~~~~~~~~-~- 188 (558)
..-|.-..+.. +.... ..+.|+-.+ +.|+.+ +-..|+..+.. |....+++..++++.++.. |
T Consensus 90 ~lYl~YVR~~~-~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm 168 (656)
T KOG1914|consen 90 KLYLSYVRETK-GKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPM 168 (656)
T ss_pred HHHHHHHHHHc-cCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCcc
Confidence 66665444332 33333 233333332 335433 22345544433 2333456667777777765 2
Q ss_pred -Cc-chHHHHHHH-------------HHHCCCccHHHHHHHHHHH--CCCCCCHHH---------------HHHHHHHHh
Q 036003 189 -CV-VSYNAIITA-------------YARSSRPNEALSLFRELQE--RNLKPTDVT---------------MLSALSSCA 236 (558)
Q Consensus 189 -~~-~~~~~li~~-------------~~~~g~~~~A~~~~~~m~~--~~~~p~~~~---------------~~~ll~~~~ 236 (558)
+. ..|+-.... --+...+..|.++++++.. .|+.-...+ |..+|.- .
T Consensus 169 ~nlEkLW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~w-E 247 (656)
T KOG1914|consen 169 HNLEKLWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKW-E 247 (656)
T ss_pred ccHHHHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHH-H
Confidence 21 123322110 0112334455555555432 232222111 1111111 1
Q ss_pred ccCChH---------HHHHHHHHH-HHhCCCCchhHHH-----HHHHHHHhcCCH-------HHHHHHHhccCCC----C
Q 036003 237 LLGSLD---------LGKWIHEYI-KKYGLDKYVKVNT-----ALIDMHAKCGRL-------DDAVSVFDNMSGK----D 290 (558)
Q Consensus 237 ~~~~~~---------~a~~~~~~~-~~~~~~~~~~~~~-----~l~~~~~~~g~~-------~~A~~~~~~~~~~----~ 290 (558)
+.+-+. ...-++++. .-.+..|++.... ..-+.+...|+. +++..+++..... +
T Consensus 248 ksNpL~t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~ 327 (656)
T KOG1914|consen 248 KSNPLRTLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKEN 327 (656)
T ss_pred hcCCcccccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHH
Confidence 111110 001111111 1122233221111 111223333333 3334444433211 2
Q ss_pred HHhHHHHHHHH---HHCCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCC-ChhHH
Q 036003 291 TQAWSAMIVAY---ATHGQGHKSILMFEEMMKAQ-VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVP-GIKHY 365 (558)
Q Consensus 291 ~~~~~~li~~~---~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~ 365 (558)
...|..+..-- ...+..+.....++++...- ..|+ .+|..+++.-.+..-++.|..+|.++.+. +..+ ++.++
T Consensus 328 ~~Ly~~~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~-~r~~hhVfVa 405 (656)
T KOG1914|consen 328 KLLYFALADYEESRYDDNKEKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKARED-KRTRHHVFVA 405 (656)
T ss_pred HHHHHHHHhhHHHhcccchhhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhc-cCCcchhhHH
Confidence 22222222111 11123556666777766532 3333 56778888888888899999999999886 5555 77788
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccC-C--CCcccHHhHHHHHHh
Q 036003 366 GCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELD-D--SHGGDYVILSNLCAR 440 (558)
Q Consensus 366 ~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~--~~~~~~~~l~~~~~~ 440 (558)
++++.-|| .++..-|.++|+-- ..-+ ++..-...+.-+...++-..+..+|++++... + .....|..++.--+.
T Consensus 406 ~A~mEy~c-skD~~~AfrIFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~ 484 (656)
T KOG1914|consen 406 AALMEYYC-SKDKETAFRIFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESN 484 (656)
T ss_pred HHHHHHHh-cCChhHHHHHHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHh
Confidence 88888776 56788999999875 3233 44455677888888899999999999998773 2 123579999998899
Q ss_pred cCChHHHHHHHHHHHh
Q 036003 441 AGRWEDVDYLRKLMKD 456 (558)
Q Consensus 441 ~g~~~~A~~~~~~m~~ 456 (558)
-|+...+.++-+++..
T Consensus 485 vGdL~si~~lekR~~~ 500 (656)
T KOG1914|consen 485 VGDLNSILKLEKRRFT 500 (656)
T ss_pred cccHHHHHHHHHHHHH
Confidence 9999999998887754
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.00018 Score=68.68 Aligned_cols=145 Identities=16% Similarity=0.093 Sum_probs=116.2
Q ss_pred HhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCC-hhHHHHHH
Q 036003 292 QAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDE-ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPG-IKHYGCMV 369 (558)
Q Consensus 292 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li 369 (558)
..+--....+...|++++|+..++.+... .|+. .........+...++.++|.+.++++.. ..|+ ....-.+.
T Consensus 307 aa~YG~A~~~~~~~~~d~A~~~l~~L~~~--~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~---l~P~~~~l~~~~a 381 (484)
T COG4783 307 AAQYGRALQTYLAGQYDEALKLLQPLIAA--QPDNPYYLELAGDILLEANKAKEAIERLKKALA---LDPNSPLLQLNLA 381 (484)
T ss_pred HHHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHh---cCCCccHHHHHHH
Confidence 33334445566789999999999999884 4554 5555566788999999999999999985 3455 66777889
Q ss_pred HHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHH
Q 036003 370 DLLGRAGRLDEAYRFIDEL--PIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDV 447 (558)
Q Consensus 370 ~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 447 (558)
.+|.+.|++.+|+.++++. ..+.|+..|..|..+|...|+..++... ....|...|+|++|
T Consensus 382 ~all~~g~~~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A 444 (484)
T COG4783 382 QALLKGGKPQEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQA 444 (484)
T ss_pred HHHHhcCChHHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHH
Confidence 9999999999999999987 4345788999999999999999888664 34567888999999
Q ss_pred HHHHHHHHhCC
Q 036003 448 DYLRKLMKDRG 458 (558)
Q Consensus 448 ~~~~~~m~~~g 458 (558)
...+....+..
T Consensus 445 ~~~l~~A~~~~ 455 (484)
T COG4783 445 IIFLMRASQQV 455 (484)
T ss_pred HHHHHHHHHhc
Confidence 99998887653
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.29 E-value=3.2e-05 Score=67.79 Aligned_cols=135 Identities=14% Similarity=0.058 Sum_probs=114.5
Q ss_pred CCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHH
Q 036003 323 SPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL--PIKSTPILWRTL 400 (558)
Q Consensus 323 ~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l 400 (558)
.|+......+-..+...|+-+....+...... ..+.|......++....+.|++..|...|.+. ..++|...|+.+
T Consensus 63 ~p~d~~i~~~a~a~~~~G~a~~~l~~~~~~~~--~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~l 140 (257)
T COG5010 63 NPEDLSIAKLATALYLRGDADSSLAVLQKSAI--AYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLL 140 (257)
T ss_pred CcchHHHHHHHHHHHhcccccchHHHHhhhhc--cCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHH
Confidence 45443335666677788888888888777654 44556667777999999999999999999998 445688999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhCCC
Q 036003 401 LSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGV 459 (558)
Q Consensus 401 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 459 (558)
.-+|.+.|+.++|...|.+++++.|.++..++.|+..|.-.|+.+.|..++......+.
T Consensus 141 gaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ 199 (257)
T COG5010 141 GAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPA 199 (257)
T ss_pred HHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCC
Confidence 99999999999999999999999999999999999999999999999999998876544
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.29 E-value=0.00044 Score=71.49 Aligned_cols=376 Identities=14% Similarity=0.016 Sum_probs=207.8
Q ss_pred CCHHHHHHHHccCCCCCc---ccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHH
Q 036003 70 SSMEHAHLLFDRIPEPDI---VLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQL 146 (558)
Q Consensus 70 ~~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~ 146 (558)
.+...|...|-+..+.|+ ..|..|...|...-+...|...|+...+..-. |..........++.. .+++.|..+
T Consensus 472 K~~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLDat-daeaaaa~adtyae~--~~we~a~~I 548 (1238)
T KOG1127|consen 472 KNSALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELDAT-DAEAAAASADTYAEE--STWEEAFEI 548 (1238)
T ss_pred hhHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCch-hhhhHHHHHHHhhcc--ccHHHHHHH
Confidence 356666666666555443 46888888888888888999999988765322 566677788888888 889999888
Q ss_pred HHHHHHhCC-CChHHHHHHHHHHHHhCCChHHHHHHHhccCC---CCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCC
Q 036003 147 HCFAIKLGL-NSNLYVCTTLINLYAECSDVEAARRIFENISE---PCVVSYNAIITAYARSSRPNEALSLFRELQERNLK 222 (558)
Q Consensus 147 ~~~~~~~g~-~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~ 222 (558)
.-..-+... ..-...|..+.-.|-+.++...|..-|+.... .|...|..+..+|.+.|++..|+++|.+... +.
T Consensus 549 ~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~dPkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~--Lr 626 (1238)
T KOG1127|consen 549 CLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTDPKDYNLWLGLGEAYPESGRYSHALKVFTKASL--LR 626 (1238)
T ss_pred HHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCCchhHHHHHHHHHHHHhcCceehHHHhhhhhHh--cC
Confidence 332222110 11122233344557778889999998888776 5677888999999999999999999988876 35
Q ss_pred CCHHHHH-HHHHHHhccCChHHHHHHHHHHHHhC------CCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC-------
Q 036003 223 PTDVTML-SALSSCALLGSLDLGKWIHEYIKKYG------LDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSG------- 288 (558)
Q Consensus 223 p~~~~~~-~ll~~~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------- 288 (558)
|+...-. .....-+..|.+.++...+..+.... ..--..++-.+...+.-.|-..+|..+|+.-.+
T Consensus 627 P~s~y~~fk~A~~ecd~GkYkeald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~ 706 (1238)
T KOG1127|consen 627 PLSKYGRFKEAVMECDNGKYKEALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLI 706 (1238)
T ss_pred cHhHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHH
Confidence 5543211 12223456788999988888775431 011112222222222233333334443333211
Q ss_pred ----CCHHhHHHHHHHHH---HCC--ChH-HHHHH-HHHHHHCCCCCC--------------------HHHHHHHHHHHH
Q 036003 289 ----KDTQAWSAMIVAYA---THG--QGH-KSILM-FEEMMKAQVSPD--------------------EITFLGLLYACS 337 (558)
Q Consensus 289 ----~~~~~~~~li~~~~---~~~--~~~-~a~~~-~~~m~~~g~~p~--------------------~~~~~~ll~~~~ 337 (558)
.+...|-.+..++. +.. -+. -...+ +.+....+.-|+ ..+|..|+..|.
T Consensus 707 h~~~~~~~~Wi~asdac~~f~q~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinyl 786 (1238)
T KOG1127|consen 707 HSLQSDRLQWIVASDACYIFSQEEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYL 786 (1238)
T ss_pred HhhhhhHHHHHHHhHHHHHHHHhcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHH
Confidence 12223333222211 111 000 00111 111222222111 122222222222
Q ss_pred c----cC----ChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhc
Q 036003 338 H----TG----LVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL--PIKSTPILWRTLLSSCSSH 407 (558)
Q Consensus 338 ~----~g----~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~ 407 (558)
+ .| +...|...+....+ -...+..+|++|.-. ...|.+.-|..-|-+- ..+....+|..+...+...
T Consensus 787 r~f~~l~et~~~~~~Ai~c~KkaV~--L~ann~~~WnaLGVl-sg~gnva~aQHCfIks~~sep~~~~~W~NlgvL~l~n 863 (1238)
T KOG1127|consen 787 RYFLLLGETMKDACTAIRCCKKAVS--LCANNEGLWNALGVL-SGIGNVACAQHCFIKSRFSEPTCHCQWLNLGVLVLEN 863 (1238)
T ss_pred HHHHHcCCcchhHHHHHHHHHHHHH--HhhccHHHHHHHHHh-hccchhhhhhhhhhhhhhccccchhheeccceeEEec
Confidence 1 11 12234444444432 122234444444433 4445555555544433 2222445666666666677
Q ss_pred CCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHH
Q 036003 408 NNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKL 453 (558)
Q Consensus 408 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 453 (558)
.+++.|...|.+...++|.+...|.....+-...|+.-++..+|.-
T Consensus 864 ~d~E~A~~af~~~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 864 QDFEHAEPAFSSVQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred ccHHHhhHHHHhhhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 7777788888877777777777777777666777777777776654
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.27 E-value=1.2e-05 Score=66.28 Aligned_cols=96 Identities=18% Similarity=0.174 Sum_probs=74.3
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHH
Q 036003 362 IKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCA 439 (558)
Q Consensus 362 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 439 (558)
......+...+...|++++|.+.|+.. ...| +...|..+...+...|++++|...++++++.+|.++..+..++.+|.
T Consensus 17 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~ 96 (135)
T TIGR02552 17 LEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLL 96 (135)
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHH
Confidence 345556667777888888888888776 3233 56777778888888888888888888888888888888888888888
Q ss_pred hcCChHHHHHHHHHHHhC
Q 036003 440 RAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 440 ~~g~~~~A~~~~~~m~~~ 457 (558)
..|++++|...|++..+.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (135)
T TIGR02552 97 ALGEPESALKALDLAIEI 114 (135)
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 888888888888877764
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.26 E-value=0.00052 Score=60.40 Aligned_cols=240 Identities=12% Similarity=0.081 Sum_probs=149.4
Q ss_pred ccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHHCCCccHHH-HHHHHH
Q 036003 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEAL-SLFREL 216 (558)
Q Consensus 138 ~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~-~~~~~m 216 (558)
|++..++..-....... .+...---+-++|...|.+.....-...-..+.....-.+......-++-++-+ ++.+.+
T Consensus 22 Gnyq~~ine~~~~~~~~--~~~e~d~y~~raylAlg~~~~~~~eI~~~~~~~lqAvr~~a~~~~~e~~~~~~~~~l~E~~ 99 (299)
T KOG3081|consen 22 GNYQQCINEAEKFSSSK--TDVELDVYMYRAYLALGQYQIVISEIKEGKATPLQAVRLLAEYLELESNKKSILASLYELV 99 (299)
T ss_pred hHHHHHHHHHHhhcccc--chhHHHHHHHHHHHHcccccccccccccccCChHHHHHHHHHHhhCcchhHHHHHHHHHHH
Confidence 67776666554443321 222222233455666666544333222222223233332222222233433333 344555
Q ss_pred HHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-CHHhHH
Q 036003 217 QERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK-DTQAWS 295 (558)
Q Consensus 217 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~ 295 (558)
.......+......-...|...+++++|.+...... +......=+..+.+..+++-|.+.+++|.+- +..+.+
T Consensus 100 a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ided~tLt 173 (299)
T KOG3081|consen 100 ADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQIDEDATLT 173 (299)
T ss_pred HhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHH
Confidence 554444454455555667889999999998877622 2222333355677888999999999999976 455666
Q ss_pred HHHHHHHH----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHH
Q 036003 296 AMIVAYAT----HGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDL 371 (558)
Q Consensus 296 ~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 371 (558)
.|..++.+ .+...+|.-+|++|-++ ..|+..+.+....++...|++++|..++++...+ -..+..+...+|.+
T Consensus 174 QLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~k--d~~dpetL~Nliv~ 250 (299)
T KOG3081|consen 174 QLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDK--DAKDPETLANLIVL 250 (299)
T ss_pred HHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhc--cCCCHHHHHHHHHH
Confidence 67666654 45688999999999875 6789999999999999999999999999999974 34456666666666
Q ss_pred HhhcCCHHHH-HHHHHhC
Q 036003 372 LGRAGRLDEA-YRFIDEL 388 (558)
Q Consensus 372 ~~~~g~~~~A-~~~~~~~ 388 (558)
-...|...++ .+.+.++
T Consensus 251 a~~~Gkd~~~~~r~l~QL 268 (299)
T KOG3081|consen 251 ALHLGKDAEVTERNLSQL 268 (299)
T ss_pred HHHhCCChHHHHHHHHHH
Confidence 6666655443 4445554
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.009 Score=61.63 Aligned_cols=68 Identities=15% Similarity=0.100 Sum_probs=54.9
Q ss_pred HHHHHHHHHHhcCCH---HHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhCCCccCC
Q 036003 396 LWRTLLSSCSSHNNL---GLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVP 463 (558)
Q Consensus 396 ~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~ 463 (558)
+.+.|++.|.+.++. -+|+-+++..+...|.|..+-..|+.+|.-.|-+..|.++++.+.-+.|..+.
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK~IQ~DT 508 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLTKSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIKNIQTDT 508 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhhcCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchHHhhhcc
Confidence 446677888887764 56777888888888999888889999999999999999999988766665543
|
|
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.21 E-value=2.3e-06 Score=51.37 Aligned_cols=35 Identities=34% Similarity=0.553 Sum_probs=31.1
Q ss_pred ccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCc
Q 036003 88 VLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDD 122 (558)
Q Consensus 88 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 122 (558)
.+||++|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 37899999999999999999999999999998874
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.20 E-value=3.1e-05 Score=74.55 Aligned_cols=124 Identities=18% Similarity=0.106 Sum_probs=101.2
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 036003 327 ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSC 404 (558)
Q Consensus 327 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~ 404 (558)
.....|+..+...++++.|.++|+++.+. .|+ ....++..+...++-.+|.+++++. ...| +...+..-...+
T Consensus 170 yLv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fL 244 (395)
T PF09295_consen 170 YLVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFL 244 (395)
T ss_pred HHHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 34456666777788899999999998864 244 4456788888888888999988887 3233 566666667778
Q ss_pred HhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHH
Q 036003 405 SSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMK 455 (558)
Q Consensus 405 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 455 (558)
...++++.|+++.+++.+..|.+..+|..|+.+|.+.|++++|+..++.+.
T Consensus 245 l~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 245 LSKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred HhcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 899999999999999999999999999999999999999999999998775
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.0016 Score=69.00 Aligned_cols=235 Identities=9% Similarity=0.014 Sum_probs=116.5
Q ss_pred CcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHH-HHhcCcccHHHHHHHHHHHHHhCCCChHHHHHH
Q 036003 86 DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA-CACVGAEALEEGKQLHCFAIKLGLNSNLYVCTT 164 (558)
Q Consensus 86 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 164 (558)
+...|..|+..+...+++++|.++.+...+. .|+...+-.+... +.+. ++...+..+ .
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~--~P~~i~~yy~~G~l~~q~--~~~~~~~lv-----------------~ 88 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKE--HKKSISALYISGILSLSR--RPLNDSNLL-----------------N 88 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCcceehHHHHHHHHHhh--cchhhhhhh-----------------h
Confidence 4455667777777777777777777755553 4554443333322 2222 333333333 1
Q ss_pred HHHHHHhCCChHHHHHHHhccCC--CCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChH
Q 036003 165 LINLYAECSDVEAARRIFENISE--PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLD 242 (558)
Q Consensus 165 ll~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 242 (558)
++.......++.....+...+.. .+..++-.+..+|-+.|+.++|.++++++.+.. +-|....+.+...++.. +++
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL~ 166 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILLYGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DKE 166 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHhhhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hHH
Confidence 22222222223222222222222 222345556666666666666666666666654 33555666666666666 666
Q ss_pred HHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHC-C
Q 036003 243 LGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKA-Q 321 (558)
Q Consensus 243 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g 321 (558)
+|.+++.++... |...+++.++.+++.++..-++.- ++.-..+.+.+... |
T Consensus 167 KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~~~d-------------~d~f~~i~~ki~~~~~ 218 (906)
T PRK14720 167 KAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYNSDD-------------FDFFLRIERKVLGHRE 218 (906)
T ss_pred HHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcCccc-------------chHHHHHHHHHHhhhc
Confidence 666666555442 444445555555555554332221 12222222222222 2
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHh
Q 036003 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLG 373 (558)
Q Consensus 322 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 373 (558)
..--..++-.+-..|-..++++++..+++.+.+ --+.|.....-++.+|.
T Consensus 219 ~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~--~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 219 FTRLVGLLEDLYEPYKALEDWDEVIYILKKILE--HDNKNNKAREELIRFYK 268 (906)
T ss_pred cchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHh--cCCcchhhHHHHHHHHH
Confidence 222233444555566666777777777777765 22234444445555554
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.14 E-value=0.0008 Score=58.79 Aligned_cols=164 Identities=16% Similarity=0.218 Sum_probs=105.1
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCCC---CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC
Q 036003 264 TALIDMHAKCGRLDDAVSVFDNMSGK---DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTG 340 (558)
Q Consensus 264 ~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g 340 (558)
..++-+....|+.+.|...++.+..+ +...-..-..-+-..|++++|+++++.+.+.. +.|..++..-+...-..|
T Consensus 56 EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KRKlAilka~G 134 (289)
T KOG3060|consen 56 EQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKRKLAILKAQG 134 (289)
T ss_pred HHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHHHHHHHHHcC
Confidence 33444445555666666555554422 11111111112334577778888888877754 334566666565666677
Q ss_pred ChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCHHHHHH
Q 036003 341 LVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSH---NNLGLAKQ 415 (558)
Q Consensus 341 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~---g~~~~a~~ 415 (558)
+.-+|++-+....+ .+..|...|..+...|...|++++|.-.++++ -..| ++..+..+...+-.. .+...+.+
T Consensus 135 K~l~aIk~ln~YL~--~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ark 212 (289)
T KOG3060|consen 135 KNLEAIKELNEYLD--KFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLELARK 212 (289)
T ss_pred CcHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 77788888888776 56778889999999999999999998888887 3345 445555555554433 36778889
Q ss_pred HHHHHHccCCCCccc
Q 036003 416 VIERIFELDDSHGGD 430 (558)
Q Consensus 416 ~~~~~~~~~~~~~~~ 430 (558)
+|.+++++.|.+...
T Consensus 213 yy~~alkl~~~~~ra 227 (289)
T KOG3060|consen 213 YYERALKLNPKNLRA 227 (289)
T ss_pred HHHHHHHhChHhHHH
Confidence 999999888855433
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.14 E-value=3.7e-06 Score=50.07 Aligned_cols=34 Identities=26% Similarity=0.516 Sum_probs=28.5
Q ss_pred cccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCC
Q 036003 87 IVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLP 120 (558)
Q Consensus 87 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p 120 (558)
+.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 1 v~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 1 VHTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred CcHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 3578888888888888888888888888888877
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=98.14 E-value=9.5e-05 Score=71.28 Aligned_cols=128 Identities=10% Similarity=0.121 Sum_probs=98.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 036003 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGL 341 (558)
Q Consensus 262 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 341 (558)
....|+..+...++++.|+.+|+++.+.++.....++..+...++..+|++++++..+.. +-+...+..-...|.+.++
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~k~~ 249 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLSKKK 249 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 334566677777888888888888888777777778888888888888999888888642 2255566666667888889
Q ss_pred hHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 036003 342 VDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKS 392 (558)
Q Consensus 342 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 392 (558)
++.|..+.+++.. -.+.+-.+|..|..+|.+.|+++.|+..++.+|..+
T Consensus 250 ~~lAL~iAk~av~--lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 250 YELALEIAKKAVE--LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred HHHHHHHHHHHHH--hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 9999999988875 334456688999999999999999999888886443
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.10 E-value=0.00037 Score=65.03 Aligned_cols=264 Identities=13% Similarity=0.020 Sum_probs=157.9
Q ss_pred HHHHHhCCChHHHHHHHhccCC--C-CcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCC-CHHHHHHHHHHHhccCCh
Q 036003 166 INLYAECSDVEAARRIFENISE--P-CVVSYNAIITAYARSSRPNEALSLFRELQERNLKP-TDVTMLSALSSCALLGSL 241 (558)
Q Consensus 166 l~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p-~~~~~~~ll~~~~~~~~~ 241 (558)
.+.+.+..++.+|+..+....+ | +..-|..-...+...|++++|.--.+.-.+. +| ......-.-.++...++.
T Consensus 56 gn~~yk~k~Y~nal~~yt~Ai~~~pd~a~yy~nRAa~~m~~~~~~~a~~dar~~~r~--kd~~~k~~~r~~~c~~a~~~~ 133 (486)
T KOG0550|consen 56 GNAFYKQKTYGNALKNYTFAIDMCPDNASYYSNRAATLMMLGRFEEALGDARQSVRL--KDGFSKGQLREGQCHLALSDL 133 (486)
T ss_pred cchHHHHhhHHHHHHHHHHHHHhCccchhhhchhHHHHHHHHhHhhcccchhhheec--CCCccccccchhhhhhhhHHH
Confidence 3455566666667666666554 3 3334555555566666666665555443332 22 122333344444444444
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC-----CCHHhHHHH-HHHHHHCCChHHHHHHHH
Q 036003 242 DLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSG-----KDTQAWSAM-IVAYATHGQGHKSILMFE 315 (558)
Q Consensus 242 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~l-i~~~~~~~~~~~a~~~~~ 315 (558)
.+|...++ +...+ ....|+..++.+.. |....|..+ ..++...|++++|...--
T Consensus 134 i~A~~~~~---------~~~~~-----------~~anal~~~~~~~~s~s~~pac~~a~~lka~cl~~~~~~~~a~~ea~ 193 (486)
T KOG0550|consen 134 IEAEEKLK---------SKQAY-----------KAANALPTLEKLAPSHSREPACFKAKLLKAECLAFLGDYDEAQSEAI 193 (486)
T ss_pred HHHHHHhh---------hhhhh-----------HHhhhhhhhhcccccccCCchhhHHHHhhhhhhhhcccchhHHHHHH
Confidence 44444443 00000 11122222222221 112233322 245667788888887777
Q ss_pred HHHHCCCCCCHHHHHHHHH--HHHccCChHHHHHHHHHchhhcCCCCChhHH-------------HHHHHHHhhcCCHHH
Q 036003 316 EMMKAQVSPDEITFLGLLY--ACSHTGLVDEGWNYFYSMRDKYGIVPGIKHY-------------GCMVDLLGRAGRLDE 380 (558)
Q Consensus 316 ~m~~~g~~p~~~~~~~ll~--~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~-------------~~li~~~~~~g~~~~ 380 (558)
...+.. ++ ..+...++ ++...++.+.|...|++.. .+.|+...- ..=.+-..+.|++.+
T Consensus 194 ~ilkld--~~-n~~al~vrg~~~yy~~~~~ka~~hf~qal---~ldpdh~~sk~~~~~~k~le~~k~~gN~~fk~G~y~~ 267 (486)
T KOG0550|consen 194 DILKLD--AT-NAEALYVRGLCLYYNDNADKAINHFQQAL---RLDPDHQKSKSASMMPKKLEVKKERGNDAFKNGNYRK 267 (486)
T ss_pred HHHhcc--cc-hhHHHHhcccccccccchHHHHHHHhhhh---ccChhhhhHHhHhhhHHHHHHHHhhhhhHhhccchhH
Confidence 666632 21 22233333 3445677888888888776 445543221 111233567899999
Q ss_pred HHHHHHhC-CCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHH
Q 036003 381 AYRFIDEL-PIKS-----TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLM 454 (558)
Q Consensus 381 A~~~~~~~-~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 454 (558)
|.+.+.+. .+.| +...|.....+..+.|+.++|+.--++++++++.-...|..-+.++...++|++|.+-+++.
T Consensus 268 A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l~le~~e~AV~d~~~a 347 (486)
T KOG0550|consen 268 AYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHLALEKWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999887 4344 45667777778889999999999999999999988888999999999999999999999887
Q ss_pred HhC
Q 036003 455 KDR 457 (558)
Q Consensus 455 ~~~ 457 (558)
.+.
T Consensus 348 ~q~ 350 (486)
T KOG0550|consen 348 MQL 350 (486)
T ss_pred Hhh
Confidence 653
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00012 Score=60.31 Aligned_cols=113 Identities=10% Similarity=0.077 Sum_probs=86.5
Q ss_pred HHHHHHHCCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC
Q 036003 313 MFEEMMKAQVSPDE-ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PI 390 (558)
Q Consensus 313 ~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~ 390 (558)
.+++... ..|+. .....+...+...|++++|.+.|+.+.. ..+.+...+..+...+.+.|++++|..++++. ..
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~--~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAA--YDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 3444444 34433 4455666777888999999999988876 33456778888888999999999999988887 33
Q ss_pred CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcc
Q 036003 391 KS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGG 429 (558)
Q Consensus 391 ~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 429 (558)
.| +...+..+...+...|++++|...|+++++.+|.+..
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 120 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPE 120 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccch
Confidence 34 5677788888899999999999999999999987654
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=98.08 E-value=6.1e-06 Score=49.46 Aligned_cols=34 Identities=41% Similarity=0.803 Sum_probs=29.4
Q ss_pred chHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCC
Q 036003 191 VSYNAIITAYARSSRPNEALSLFRELQERNLKPT 224 (558)
Q Consensus 191 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 224 (558)
.+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 3688888889999999999999988888888887
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=98.00 E-value=1.1e-05 Score=48.00 Aligned_cols=33 Identities=42% Similarity=0.810 Sum_probs=25.5
Q ss_pred chHHHHHHHHHHCCCccHHHHHHHHHHHCCCCC
Q 036003 191 VSYNAIITAYARSSRPNEALSLFRELQERNLKP 223 (558)
Q Consensus 191 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 223 (558)
.+|+.++.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 467777788888888888888888877777766
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.99 E-value=0.00097 Score=58.28 Aligned_cols=164 Identities=13% Similarity=0.116 Sum_probs=128.7
Q ss_pred hHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHH
Q 036003 293 AWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGL-LYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDL 371 (558)
Q Consensus 293 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l-l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 371 (558)
.|..++-+....|+.+.|...++++... + |...-...+ ..-+-..|.+++|.++++.+.++ -+.|..++---+-.
T Consensus 54 l~EqV~IAAld~~~~~lAq~C~~~L~~~-f-p~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~d--dpt~~v~~KRKlAi 129 (289)
T KOG3060|consen 54 LYEQVFIAALDTGRDDLAQKCINQLRDR-F-PGSKRVGKLKAMLLEATGNYKEAIEYYESLLED--DPTDTVIRKRKLAI 129 (289)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHh-C-CCChhHHHHHHHHHHHhhchhhHHHHHHHHhcc--CcchhHHHHHHHHH
Confidence 3556666777889999999999999876 3 443222222 22245678999999999999974 35677777777777
Q ss_pred HhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcC---ChHH
Q 036003 372 LGRAGRLDEAYRFIDEL--PIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAG---RWED 446 (558)
Q Consensus 372 ~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~ 446 (558)
.-..|+.-+|++.+.+. .+..|...|.-+...|...|+++.|.-++++++=..|-++..+..+.+.+.-.| +.+-
T Consensus 130 lka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~ 209 (289)
T KOG3060|consen 130 LKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQGGAENLEL 209 (289)
T ss_pred HHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHH
Confidence 77788888888877776 455799999999999999999999999999999999999999999988876555 4667
Q ss_pred HHHHHHHHHhCCCc
Q 036003 447 VDYLRKLMKDRGVL 460 (558)
Q Consensus 447 A~~~~~~m~~~g~~ 460 (558)
|.+++.+..+....
T Consensus 210 arkyy~~alkl~~~ 223 (289)
T KOG3060|consen 210 ARKYYERALKLNPK 223 (289)
T ss_pred HHHHHHHHHHhChH
Confidence 89999988875543
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.99 E-value=9.3e-06 Score=60.36 Aligned_cols=78 Identities=14% Similarity=0.255 Sum_probs=52.9
Q ss_pred cCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHH
Q 036003 375 AGRLDEAYRFIDEL-PIKS---TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYL 450 (558)
Q Consensus 375 ~g~~~~A~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 450 (558)
.|+++.|+.+++++ ...| +...+..+..++.+.|++++|..++++ .+.++.+......++.+|.+.|++++|.+.
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 46677777777776 1122 344555577777888888888888877 666666656666667888888888888887
Q ss_pred HHH
Q 036003 451 RKL 453 (558)
Q Consensus 451 ~~~ 453 (558)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 765
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.96 E-value=0.00028 Score=58.70 Aligned_cols=52 Identities=10% Similarity=0.105 Sum_probs=22.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHH
Q 036003 400 LLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRK 452 (558)
Q Consensus 400 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 452 (558)
|...+...|++++|+..++.. ...+..+..+..++++|.+.|++++|...|+
T Consensus 91 LA~~~~~~~~~d~Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~ 142 (145)
T PF09976_consen 91 LARILLQQGQYDEALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQ 142 (145)
T ss_pred HHHHHHHcCCHHHHHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 334444444444444444331 1112222334444555555555555555544
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.95 E-value=9e-05 Score=56.23 Aligned_cols=92 Identities=16% Similarity=0.190 Sum_probs=72.3
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcC
Q 036003 365 YGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAG 442 (558)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 442 (558)
+..+...+...|++++|...+++. ...| +...+..+...+...+++++|.+.+++..+..|.+...+..++.++...|
T Consensus 3 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 3 LLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 455667777788888888888876 3333 34667777888888888889999888888888887778888888888888
Q ss_pred ChHHHHHHHHHHHh
Q 036003 443 RWEDVDYLRKLMKD 456 (558)
Q Consensus 443 ~~~~A~~~~~~m~~ 456 (558)
++++|...+++..+
T Consensus 83 ~~~~a~~~~~~~~~ 96 (100)
T cd00189 83 KYEEALEAYEKALE 96 (100)
T ss_pred hHHHHHHHHHHHHc
Confidence 88888888887754
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00071 Score=56.30 Aligned_cols=125 Identities=17% Similarity=0.128 Sum_probs=82.7
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCC--hhHHHHHH
Q 036003 294 WSAMIVAYATHGQGHKSILMFEEMMKAQVSPD--EITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPG--IKHYGCMV 369 (558)
Q Consensus 294 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~li 369 (558)
|..++..+ ..++...+...++.+.+....-. ....-.+...+...|++++|...|+.+... ...+. ......|.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHHHHH
Confidence 44455555 47777788778888877532211 123334556677788888888888888874 32222 12344567
Q ss_pred HHHhhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036003 370 DLLGRAGRLDEAYRFIDELPI-KSTPILWRTLLSSCSSHNNLGLAKQVIERI 420 (558)
Q Consensus 370 ~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 420 (558)
..+...|++++|+..++..+. ......+......+...|+.++|...|+++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 778888888888888877632 224456667778888888888888888775
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00027 Score=56.49 Aligned_cols=100 Identities=11% Similarity=0.036 Sum_probs=48.3
Q ss_pred HHHHHHHHccCChHHHHHHHHHchhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHH
Q 036003 330 LGLLYACSHTGLVDEGWNYFYSMRDKYGIVP-GIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKST----PILWRTLLSS 403 (558)
Q Consensus 330 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~ 403 (558)
..+...+.+.|++++|.+.|..+...+.-.+ ....+..+...+.+.|++++|.+.|+.+ ...|+ ...+..+..+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 3344444555555555555555544211000 1223444555555555555555555554 11121 2344455555
Q ss_pred HHhcCCHHHHHHHHHHHHccCCCCcc
Q 036003 404 CSSHNNLGLAKQVIERIFELDDSHGG 429 (558)
Q Consensus 404 ~~~~g~~~~a~~~~~~~~~~~~~~~~ 429 (558)
+...|+.++|.+.++++++..|++..
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~~p~~~~ 111 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKRYPGSSA 111 (119)
T ss_pred HHHhCChHHHHHHHHHHHHHCcCChh
Confidence 55566666666666666665555443
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00018 Score=54.47 Aligned_cols=82 Identities=13% Similarity=0.017 Sum_probs=69.9
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHhHHCCC-CCCcccHHHHHHHHHhcCc------ccHHHHHHHHHHHHHhCCCChHHHH
Q 036003 90 FNTMARGYSRSKTPIRAIFLFVELLNSGL-LPDDYSFPSLLKACACVGA------EALEEGKQLHCFAIKLGLNSNLYVC 162 (558)
Q Consensus 90 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~~~------~~~~~a~~~~~~~~~~g~~~~~~~~ 162 (558)
....|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++..- +.+-+.+.+++.|+..++.|+..+|
T Consensus 28 ~i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etY 107 (120)
T PF08579_consen 28 QIDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETY 107 (120)
T ss_pred HHHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHH
Confidence 34556667777999999999999999999 8999999999999887642 2456788899999999999999999
Q ss_pred HHHHHHHHh
Q 036003 163 TTLINLYAE 171 (558)
Q Consensus 163 ~~ll~~~~~ 171 (558)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999988765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.85 E-value=0.00023 Score=56.91 Aligned_cols=96 Identities=13% Similarity=0.023 Sum_probs=81.0
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC---cccHHhH
Q 036003 363 KHYGCMVDLLGRAGRLDEAYRFIDEL-PIKST----PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH---GGDYVIL 434 (558)
Q Consensus 363 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l 434 (558)
.++..++..+.+.|++++|.+.|+.+ ...|+ ...+..+..++...|+++.|...++++....|.+ +..+..+
T Consensus 3 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~ 82 (119)
T TIGR02795 3 EAYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKL 82 (119)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHH
Confidence 45667888899999999999999988 22333 3466778999999999999999999999988775 4568888
Q ss_pred HHHHHhcCChHHHHHHHHHHHhCC
Q 036003 435 SNLCARAGRWEDVDYLRKLMKDRG 458 (558)
Q Consensus 435 ~~~~~~~g~~~~A~~~~~~m~~~g 458 (558)
+.++.+.|++++|.+.++++.+..
T Consensus 83 ~~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 83 GMSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHHhCChHHHHHHHHHHHHHC
Confidence 999999999999999999998764
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.83 E-value=0.0055 Score=60.65 Aligned_cols=198 Identities=19% Similarity=0.174 Sum_probs=107.8
Q ss_pred cHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHHC
Q 036003 124 SFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARS 203 (558)
Q Consensus 124 ~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~ 203 (558)
.+++.=++|.+.....+-+...-++++.++|-.|+... +...++-.|.+.+|.++|.+ .
T Consensus 600 ~f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~------------------~ 658 (1081)
T KOG1538|consen 600 DFETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKR------------------S 658 (1081)
T ss_pred hhHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHH------------------c
Confidence 34444455555422233344445667777787777654 34556677888888888765 4
Q ss_pred CCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh--CC-CCchhHHHHHHHHHHhcCCHHHHH
Q 036003 204 SRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY--GL-DKYVKVNTALIDMHAKCGRLDDAV 280 (558)
Q Consensus 204 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~-~~~~~~~~~l~~~~~~~g~~~~A~ 280 (558)
|.-..|+++|..|.-- -...-+...|..++-..+.++-.+. ++ +| .+-..++...|+.++|.
T Consensus 659 G~enRAlEmyTDlRMF----------D~aQE~~~~g~~~eKKmL~RKRA~WAr~~keP-----kaAAEmLiSaGe~~KAi 723 (1081)
T KOG1538|consen 659 GHENRALEMYTDLRMF----------DYAQEFLGSGDPKEKKMLIRKRADWARNIKEP-----KAAAEMLISAGEHVKAI 723 (1081)
T ss_pred CchhhHHHHHHHHHHH----------HHHHHHhhcCChHHHHHHHHHHHHHhhhcCCc-----HHHHHHhhcccchhhhh
Confidence 5666666666655321 1122233344443333333222111 11 12 22345566677777766
Q ss_pred HHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCC
Q 036003 281 SVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVP 360 (558)
Q Consensus 281 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 360 (558)
.+. ..+|..+-+.++-+++-. .+..+...+...+.+...+..|-++|.+|-.
T Consensus 724 ~i~------------------~d~gW~d~lidI~rkld~----~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD------ 775 (1081)
T KOG1538|consen 724 EIC------------------GDHGWVDMLIDIARKLDK----AEREPLLLCATYLKKLDSPGLAAEIFLKMGD------ 775 (1081)
T ss_pred hhh------------------hcccHHHHHHHHHhhcch----hhhhHHHHHHHHHhhccccchHHHHHHHhcc------
Confidence 542 234444555555444432 1334444555555566667777777777743
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 036003 361 GIKHYGCMVDLLGRAGRLDEAYRFIDELP 389 (558)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 389 (558)
...+++.....+++.+|..+-++.|
T Consensus 776 ----~ksiVqlHve~~~W~eAFalAe~hP 800 (1081)
T KOG1538|consen 776 ----LKSLVQLHVETQRWDEAFALAEKHP 800 (1081)
T ss_pred ----HHHHhhheeecccchHhHhhhhhCc
Confidence 2356777777888888888777773
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.83 E-value=5.1e-05 Score=53.88 Aligned_cols=64 Identities=17% Similarity=0.162 Sum_probs=58.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcC-ChHHHHHHHHHHHh
Q 036003 393 TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAG-RWEDVDYLRKLMKD 456 (558)
Q Consensus 393 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~m~~ 456 (558)
+..+|..+...+...|++++|+..|+++++.+|.++.+|..++.+|...| ++++|.+.+++..+
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 46788889999999999999999999999999999999999999999999 79999999988765
|
... |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.80 E-value=0.00044 Score=66.95 Aligned_cols=85 Identities=12% Similarity=0.085 Sum_probs=41.0
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHH
Q 036003 372 LGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDY 449 (558)
Q Consensus 372 ~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 449 (558)
+...|++++|+++|++. ...| +...|..+..+|...|++++|+..++++++++|.++..|..++.+|...|++++|..
T Consensus 12 a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 12 AFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 33444455555544444 2122 334444444445555555555555555555555555555555555555555555555
Q ss_pred HHHHHHh
Q 036003 450 LRKLMKD 456 (558)
Q Consensus 450 ~~~~m~~ 456 (558)
.|++..+
T Consensus 92 ~~~~al~ 98 (356)
T PLN03088 92 ALEKGAS 98 (356)
T ss_pred HHHHHHH
Confidence 5554443
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.78 E-value=3e-05 Score=44.86 Aligned_cols=31 Identities=26% Similarity=0.478 Sum_probs=24.9
Q ss_pred ccHHHHHHHHhcCCCchHHHHHHHHhHHCCC
Q 036003 88 VLFNTMARGYSRSKTPIRAIFLFVELLNSGL 118 (558)
Q Consensus 88 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~ 118 (558)
++||.+|++|++.|++++|.++|++|.+.|+
T Consensus 1 v~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 1 VTYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred CcHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 3688888888888888888888888887664
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.72 E-value=9.9e-05 Score=51.65 Aligned_cols=58 Identities=12% Similarity=0.187 Sum_probs=45.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhC
Q 036003 400 LLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 400 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
+...+...|++++|...|+++++..|.++..+..++.++...|++++|...|+++.+.
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4556777888888888888888888888888888888888888888888888877653
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.68 E-value=0.003 Score=59.26 Aligned_cols=20 Identities=5% Similarity=0.109 Sum_probs=9.8
Q ss_pred HHHHHHCCCccHHHHHHHHH
Q 036003 197 ITAYARSSRPNEALSLFREL 216 (558)
Q Consensus 197 i~~~~~~g~~~~A~~~~~~m 216 (558)
...|-..|++++|.+.|.+.
T Consensus 42 a~~fk~~~~~~~A~~ay~kA 61 (282)
T PF14938_consen 42 ANCFKLAKDWEKAAEAYEKA 61 (282)
T ss_dssp HHHHHHTT-CHHHHHHHHHH
T ss_pred HHHHHHHhccchhHHHHHHH
Confidence 44455555555555555443
|
|
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.66 E-value=5.2e-05 Score=43.84 Aligned_cols=29 Identities=38% Similarity=0.769 Sum_probs=20.1
Q ss_pred hHHHHHHHHHHCCCccHHHHHHHHHHHCC
Q 036003 192 SYNAIITAYARSSRPNEALSLFRELQERN 220 (558)
Q Consensus 192 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~ 220 (558)
+|++++++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 56777777777777777777777776655
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.0002 Score=64.23 Aligned_cols=91 Identities=11% Similarity=0.059 Sum_probs=60.9
Q ss_pred HHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHH
Q 036003 336 CSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKST-PILWRTLLSSCSSHNNLGLA 413 (558)
Q Consensus 336 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a 413 (558)
+.+.+++.+|+..|.+..+ -.+-|...|..=..+|.+.|.++.|++-.+.. .+.|. ..+|..|..+|...|++++|
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~A 168 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEEA 168 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHHH
Confidence 4566777777777777764 22335566666677777777777777666655 44443 35677777777777777777
Q ss_pred HHHHHHHHccCCCCc
Q 036003 414 KQVIERIFELDDSHG 428 (558)
Q Consensus 414 ~~~~~~~~~~~~~~~ 428 (558)
++.|+++++++|.+.
T Consensus 169 ~~aykKaLeldP~Ne 183 (304)
T KOG0553|consen 169 IEAYKKALELDPDNE 183 (304)
T ss_pred HHHHHhhhccCCCcH
Confidence 777777777777764
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.061 Score=51.47 Aligned_cols=379 Identities=11% Similarity=0.086 Sum_probs=197.7
Q ss_pred hhcCCCCCCHHHHHHHHccCCCC---Cccc------HHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHH
Q 036003 63 CTQNPTTSSMEHAHLLFDRIPEP---DIVL------FNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACA 133 (558)
Q Consensus 63 ~~~~~~~~~~~~A~~~~~~~~~~---~~~~------~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~ 133 (558)
+.+. +++.+|.++|.++-.. +... -+.++++|... +.+.....+....+. .| ...|..+..++.
T Consensus 16 Lqkq---~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~ 88 (549)
T PF07079_consen 16 LQKQ---KKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALV 88 (549)
T ss_pred HHHH---hhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHH
Confidence 3455 8999999999988642 2222 33466666543 344444445455443 33 456667776655
Q ss_pred hcCcccHHHHHHHHHHHHHh--CCC------------ChHHHHHHHHHHHHhCCChHHHHHHHhccCC--------CCcc
Q 036003 134 CVGAEALEEGKQLHCFAIKL--GLN------------SNLYVCTTLINLYAECSDVEAARRIFENISE--------PCVV 191 (558)
Q Consensus 134 ~~~~~~~~~a~~~~~~~~~~--g~~------------~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--------~~~~ 191 (558)
.-..+.+.+|.+.+..-... +.. +|-..-+..+..+...|++.+++.+++++.. -+..
T Consensus 89 ~Y~~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d 168 (549)
T PF07079_consen 89 AYKQKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSD 168 (549)
T ss_pred HHHhhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHH
Confidence 44448899998888776654 222 2333446777888999999999999988864 5777
Q ss_pred hHHHHHHHHHHC--------CCcc-------HHHHHHHHHHHC------CCCCCHHHHHHHHHHHhcc--CChHHHHHHH
Q 036003 192 SYNAIITAYARS--------SRPN-------EALSLFRELQER------NLKPTDVTMLSALSSCALL--GSLDLGKWIH 248 (558)
Q Consensus 192 ~~~~li~~~~~~--------g~~~-------~A~~~~~~m~~~------~~~p~~~~~~~ll~~~~~~--~~~~~a~~~~ 248 (558)
+|+.++-.+.++ ...+ -+.-...+|... .+.|....+..++.-..-. ....--.+++
T Consensus 169 ~yd~~vlmlsrSYfLEl~e~~s~dl~pdyYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l 248 (549)
T PF07079_consen 169 MYDRAVLMLSRSYFLELKESMSSDLYPDYYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQIL 248 (549)
T ss_pred HHHHHHHHHhHHHHHHHHHhcccccChHHHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHH
Confidence 888755544432 1111 122222222211 1233333333333322211 1122223333
Q ss_pred HHHHHhCCCCchh-HHHHHHHHHHhcCCHHHHHHHHhccC--------CCCHHhHHHHHHHHHHCCChHHHHHHHHHHHH
Q 036003 249 EYIKKYGLDKYVK-VNTALIDMHAKCGRLDDAVSVFDNMS--------GKDTQAWSAMIVAYATHGQGHKSILMFEEMMK 319 (558)
Q Consensus 249 ~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 319 (558)
+.-.+.-+.|+-. +...|..-+.+ +.+++..+-+.+. +.=+.++..++....+.++..+|-..+.-+..
T Consensus 249 ~~We~~yv~p~~~LVi~~L~~~f~~--~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ 326 (549)
T PF07079_consen 249 ENWENFYVHPNYDLVIEPLKQQFMS--DPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKI 326 (549)
T ss_pred HHHHhhccCCchhHHHHHHHHHHhc--ChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHh
Confidence 3334444444422 22233333333 2333333222221 11233455555555666666666555554433
Q ss_pred CCCCCCHH---------------------------------------------HHHHHHHH---HHccCC-hHHHHHHHH
Q 036003 320 AQVSPDEI---------------------------------------------TFLGLLYA---CSHTGL-VDEGWNYFY 350 (558)
Q Consensus 320 ~g~~p~~~---------------------------------------------~~~~ll~~---~~~~g~-~~~a~~~~~ 350 (558)
+.|+.. ....|+.+ +-+.|. -++|.++++
T Consensus 327 --ldp~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk 404 (549)
T PF07079_consen 327 --LDPRISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLK 404 (549)
T ss_pred --cCCcchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHH
Confidence 122211 11111111 112232 456666666
Q ss_pred HchhhcCCCCChhHHHHHH----HHHhhc---CCHH---HHHHHHHhCCCCC----CHHHHHHHHHH--HHhcCCHHHHH
Q 036003 351 SMRDKYGIVPGIKHYGCMV----DLLGRA---GRLD---EAYRFIDELPIKS----TPILWRTLLSS--CSSHNNLGLAK 414 (558)
Q Consensus 351 ~~~~~~~~~~~~~~~~~li----~~~~~~---g~~~---~A~~~~~~~~~~~----~~~~~~~l~~~--~~~~g~~~~a~ 414 (558)
.+.+ --+-|..+-+.+. ..|.++ ..+. +-..++++.++.| +...-|.|.+| +..+|++.++.
T Consensus 405 ~il~--ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~ 482 (549)
T PF07079_consen 405 LILQ--FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCY 482 (549)
T ss_pred HHHH--hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHH
Confidence 6653 1122332222221 112211 1111 1222333444444 23445555554 45789999998
Q ss_pred HHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHH
Q 036003 415 QVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMK 455 (558)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 455 (558)
-.-.-..+..| ++.+|..++-++....++++|..++..+.
T Consensus 483 ~ys~WL~~iaP-S~~~~RLlGl~l~e~k~Y~eA~~~l~~LP 522 (549)
T PF07079_consen 483 LYSSWLTKIAP-SPQAYRLLGLCLMENKRYQEAWEYLQKLP 522 (549)
T ss_pred HHHHHHHHhCC-cHHHHHHHHHHHHHHhhHHHHHHHHHhCC
Confidence 88888888888 78999999999999999999999998653
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.65 E-value=0.00057 Score=58.82 Aligned_cols=94 Identities=12% Similarity=0.062 Sum_probs=61.6
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHH
Q 036003 363 KHYGCMVDLLGRAGRLDEAYRFIDEL-PIKST----PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNL 437 (558)
Q Consensus 363 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 437 (558)
..+..+...+...|++++|...|++. ...|+ ...+..+...+...|++++|...++++++..|.+...+..++.+
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 115 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVI 115 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHH
Confidence 34555566666666666666666655 21121 34666777777777888888888888887777777777777777
Q ss_pred HHhcCC--------------hHHHHHHHHHHHh
Q 036003 438 CARAGR--------------WEDVDYLRKLMKD 456 (558)
Q Consensus 438 ~~~~g~--------------~~~A~~~~~~m~~ 456 (558)
|...|+ +++|.+++++...
T Consensus 116 ~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~ 148 (172)
T PRK02603 116 YHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIR 148 (172)
T ss_pred HHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHh
Confidence 776665 4556666665554
|
|
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.64 E-value=0.00072 Score=51.07 Aligned_cols=90 Identities=16% Similarity=0.145 Sum_probs=42.3
Q ss_pred HHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHH
Q 036003 334 YACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLG 411 (558)
Q Consensus 334 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~ 411 (558)
..+...|++++|...++.+.+. .+.+...+..+...+...|++++|.+.+++. ...| +..++..+...+...|+++
T Consensus 8 ~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (100)
T cd00189 8 NLYYKLGDYDEALEYYEKALEL--DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYE 85 (100)
T ss_pred HHHHHHhcHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHH
Confidence 3344444555555555444431 1122234444444555555555555555443 1112 2234555555555556666
Q ss_pred HHHHHHHHHHccCC
Q 036003 412 LAKQVIERIFELDD 425 (558)
Q Consensus 412 ~a~~~~~~~~~~~~ 425 (558)
.|...+++..+..|
T Consensus 86 ~a~~~~~~~~~~~~ 99 (100)
T cd00189 86 EALEAYEKALELDP 99 (100)
T ss_pred HHHHHHHHHHccCC
Confidence 66666655555443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.62 E-value=0.016 Score=54.29 Aligned_cols=210 Identities=16% Similarity=0.161 Sum_probs=109.3
Q ss_pred ccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHHCCCccHHHHHHHHHH
Q 036003 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217 (558)
Q Consensus 138 ~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 217 (558)
.++++|..+|++. .+.|...|++++|.+.|.+. ...+.+.++...|-..|.++.
T Consensus 29 ~~~e~Aa~~y~~A---------------a~~fk~~~~~~~A~~ay~kA-----------a~~~~~~~~~~~Aa~~~~~Aa 82 (282)
T PF14938_consen 29 PDYEEAADLYEKA---------------ANCFKLAKDWEKAAEAYEKA-----------ADCYEKLGDKFEAAKAYEEAA 82 (282)
T ss_dssp HHHHHHHHHHHHH---------------HHHHHHTT-CHHHHHHHHHH-----------HHHHHHTT-HHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH---------------HHHHHHHhccchhHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHH
Confidence 4677777776654 44566677777777777653 333333333333333332221
Q ss_pred H---CCCCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc-CCHHHHHHHHhccCCC--
Q 036003 218 E---RNLKPT--DVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKC-GRLDDAVSVFDNMSGK-- 289 (558)
Q Consensus 218 ~---~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~-- 289 (558)
. .+ .|+ ...|...+..|...|++..|-..+.. +...|... |++++|.+.|++..+-
T Consensus 83 ~~~k~~-~~~~Ai~~~~~A~~~y~~~G~~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~ 146 (282)
T PF14938_consen 83 NCYKKG-DPDEAIECYEKAIEIYREAGRFSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAAELYE 146 (282)
T ss_dssp HHHHHT-THHHHHHHHHHHHHHHHHCT-HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHHHHHH
T ss_pred HHHHhh-CHHHHHHHHHHHHHHHHhcCcHHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 1 00 111 11223333445556666555544433 44445555 6677777666655311
Q ss_pred -------CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCC-----CCHH-HHHHHHHHHHccCChHHHHHHHHHchhhc
Q 036003 290 -------DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVS-----PDEI-TFLGLLYACSHTGLVDEGWNYFYSMRDKY 356 (558)
Q Consensus 290 -------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-----p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 356 (558)
-...+..+...+.+.|++++|.++|++....... .+.. .|...+-++...|++..|.+.+++.....
T Consensus 147 ~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~ 226 (282)
T PF14938_consen 147 QEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQD 226 (282)
T ss_dssp HTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTS
T ss_pred HCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 1234566677788888888888888887764322 1221 23333445666788888888888876431
Q ss_pred -CCCCC--hhHHHHHHHHHhh--cCCHHHHHHHHHhCC
Q 036003 357 -GIVPG--IKHYGCMVDLLGR--AGRLDEAYRFIDELP 389 (558)
Q Consensus 357 -~~~~~--~~~~~~li~~~~~--~g~~~~A~~~~~~~~ 389 (558)
++..+ ......|+.++-. ...+.+|..-|+.+.
T Consensus 227 ~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 227 PSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp TTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred CCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 22222 3445566666643 345667777777664
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0011 Score=64.24 Aligned_cols=101 Identities=10% Similarity=0.009 Sum_probs=62.0
Q ss_pred HHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 036003 335 ACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGL 412 (558)
Q Consensus 335 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~ 412 (558)
.+...|++++|...|.++.. .-+.+...|..+..+|.+.|++++|+..++++ ...| +...|..+..+|...|++++
T Consensus 11 ~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~e 88 (356)
T PLN03088 11 EAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQT 88 (356)
T ss_pred HHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHH
Confidence 34455666666666666664 22334555666666666666666666666665 3333 45566666667777777777
Q ss_pred HHHHHHHHHccCCCCcccHHhHHHH
Q 036003 413 AKQVIERIFELDDSHGGDYVILSNL 437 (558)
Q Consensus 413 a~~~~~~~~~~~~~~~~~~~~l~~~ 437 (558)
|...|+++++++|.++.....+..+
T Consensus 89 A~~~~~~al~l~P~~~~~~~~l~~~ 113 (356)
T PLN03088 89 AKAALEKGASLAPGDSRFTKLIKEC 113 (356)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 7777777777777766555544444
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.59 E-value=0.0033 Score=63.71 Aligned_cols=138 Identities=16% Similarity=0.076 Sum_probs=68.5
Q ss_pred CCHHhHHHHHHHHHHC--C---ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHcc--------CChHHHHHHHHHchh
Q 036003 289 KDTQAWSAMIVAYATH--G---QGHKSILMFEEMMKAQVSPDE-ITFLGLLYACSHT--------GLVDEGWNYFYSMRD 354 (558)
Q Consensus 289 ~~~~~~~~li~~~~~~--~---~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~--------g~~~~a~~~~~~~~~ 354 (558)
.+..+|...+.+.... + ...+|..+|++..+ ..|+. ..+..+..++... +++..+.+...+...
T Consensus 335 ~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~a 412 (517)
T PRK10153 335 HQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIVA 412 (517)
T ss_pred CCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhhh
Confidence 4667777777764432 2 26678888888887 45654 3333333222111 011222222222221
Q ss_pred hcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCc
Q 036003 355 KYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHG 428 (558)
Q Consensus 355 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 428 (558)
......+...|.++.-.....|++++|...+++. ...|+...|..+...+...|+.++|.+.++++..++|.++
T Consensus 413 l~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~p 487 (517)
T PRK10153 413 LPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGEN 487 (517)
T ss_pred cccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCc
Confidence 1012223344554544444455555555555554 3344555555555555555555555555555555555544
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.00073 Score=57.93 Aligned_cols=94 Identities=12% Similarity=-0.029 Sum_probs=74.3
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHH
Q 036003 361 GIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKST----PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILS 435 (558)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 435 (558)
....|..+...+...|++++|...|++. ...|+ ..+|..+...+...|++++|...++++++..|.....+..++
T Consensus 34 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la 113 (168)
T CHL00033 34 EAFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHH
Confidence 3556677777888889999999988886 22222 357888889999999999999999999999988888888888
Q ss_pred HHHH-------hcCChHHHHHHHHHH
Q 036003 436 NLCA-------RAGRWEDVDYLRKLM 454 (558)
Q Consensus 436 ~~~~-------~~g~~~~A~~~~~~m 454 (558)
.+|. ..|++++|...+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 8887 788888776666544
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.14 Score=53.41 Aligned_cols=221 Identities=12% Similarity=0.074 Sum_probs=128.6
Q ss_pred HHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCh
Q 036003 96 GYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDV 175 (558)
Q Consensus 96 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~ 175 (558)
.....+++.+|+....++.+. .|+ ..|..+++++.....|..++|..+++.....+.. |..|...+-.+|.+.++.
T Consensus 18 d~ld~~qfkkal~~~~kllkk--~Pn-~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~ 93 (932)
T KOG2053|consen 18 DLLDSSQFKKALAKLGKLLKK--HPN-ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKL 93 (932)
T ss_pred HHhhhHHHHHHHHHHHHHHHH--CCC-cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhh
Confidence 334556777777777777654 333 3455566665544337777777777666555433 677777777777777777
Q ss_pred HHHHHHHhccCC--CCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----------ChHH
Q 036003 176 EAARRIFENISE--PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLG----------SLDL 243 (558)
Q Consensus 176 ~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----------~~~~ 243 (558)
++|..+|++..+ |+......+..+|.+.+.+.+-.+.--+|-+. .+-+...|-++++...+.- -..-
T Consensus 94 d~~~~~Ye~~~~~~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~L 172 (932)
T KOG2053|consen 94 DEAVHLYERANQKYPSEELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLAL 172 (932)
T ss_pred hHHHHHHHHHHhhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHH
Confidence 777777777765 55444555566677766665544443333332 3334455555555443321 1223
Q ss_pred HHHHHHHHHHhC-CCCchhHHHHHHHHHHhcCCHHHHHHHHhc-c----CCCCHHhHHHHHHHHHHCCChHHHHHHHHHH
Q 036003 244 GKWIHEYIKKYG-LDKYVKVNTALIDMHAKCGRLDDAVSVFDN-M----SGKDTQAWSAMIVAYATHGQGHKSILMFEEM 317 (558)
Q Consensus 244 a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~-~----~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 317 (558)
|.+.++.+.+.+ .-.+..-.-.....+...|++++|++++.. . ..-+...-+.-+..+...+++.+..++-.++
T Consensus 173 A~~m~~~~l~~~gk~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~L 252 (932)
T KOG2053|consen 173 AEKMVQKLLEKKGKIESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRL 252 (932)
T ss_pred HHHHHHHHhccCCccchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHH
Confidence 455555554443 111111122233445567788888887732 2 2224444556667777788888888888888
Q ss_pred HHCC
Q 036003 318 MKAQ 321 (558)
Q Consensus 318 ~~~g 321 (558)
...|
T Consensus 253 l~k~ 256 (932)
T KOG2053|consen 253 LEKG 256 (932)
T ss_pred HHhC
Confidence 8765
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.58 E-value=0.0015 Score=63.44 Aligned_cols=120 Identities=11% Similarity=0.077 Sum_probs=92.0
Q ss_pred CCCCChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCC-C-----CcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCC
Q 036003 48 HLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE-P-----DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPD 121 (558)
Q Consensus 48 g~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 121 (558)
+...+......+++.+... .+++.+..++-+... | -..+..++|+.|.+.|..++++.++..=...|+-||
T Consensus 61 ~~~vS~~dld~fvn~~~~~---~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D 137 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESK---DDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPD 137 (429)
T ss_pred CCCCcHHHHHHHHhhcCCH---hHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCC
Confidence 4456666777778877777 778888887766543 1 234556888888888888888888888888888888
Q ss_pred cccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC
Q 036003 122 DYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAEC 172 (558)
Q Consensus 122 ~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 172 (558)
..+++.||..+.+. |++..|.++...|...+...+..|+..-+.+|.+.
T Consensus 138 ~~s~n~Lmd~fl~~--~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 138 NFSFNLLMDHFLKK--GNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hhhHHHHHHHHhhc--ccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888 88888888888888777666777776666666665
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.01 Score=49.42 Aligned_cols=133 Identities=11% Similarity=0.061 Sum_probs=105.2
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC---CHHHH
Q 036003 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS---TPILW 397 (558)
Q Consensus 322 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~---~~~~~ 397 (558)
..|+...-..|..+....|+..+|...|++.... -+..|....-.+.++....+++..|...++++ ...| .+.+.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 5678877888999999999999999999999873 45667888888899999999999999999987 2222 23445
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 398 RTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 398 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
-.+...+...|++..|+..|+.++..-|. +..-......+.++|+.++|..-+..+.+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 56778899999999999999999987765 34555566778899988887766655543
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.57 E-value=0.071 Score=50.02 Aligned_cols=289 Identities=14% Similarity=0.096 Sum_probs=179.8
Q ss_pred cHHHHHHHHhc--CCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHH--HHH
Q 036003 89 LFNTMARGYSR--SKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYV--CTT 164 (558)
Q Consensus 89 ~~~~li~~~~~--~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~--~~~ 164 (558)
-|.+|-.++.. .|+-..|.++-.+-.+. +.-|...+..++.+-...-.|+.+.|.+-|+.|.. .|.... ...
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~---dPEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD---DPETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc---ChHHHHHhHHH
Confidence 46666666654 46777777776665433 45577777888877666555899999999998875 232222 222
Q ss_pred HHHHHHhCCChHHHHHHHhccCC--CC-cchHHHHHHHHHHCCCccHHHHHHHHHHHCC-CCCCHH--HHHHHHHHHh--
Q 036003 165 LINLYAECSDVEAARRIFENISE--PC-VVSYNAIITAYARSSRPNEALSLFRELQERN-LKPTDV--TMLSALSSCA-- 236 (558)
Q Consensus 165 ll~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~-~~p~~~--~~~~ll~~~~-- 236 (558)
|.-.--+.|+.+.|...-+..-. |. ...+.+.+...+..|+|+.|+++++.-++.. +.++.. .-..|+.+-.
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 33333567888888877776654 22 3467788888999999999999998765542 333332 1122332221
Q ss_pred -ccCChHHHHHHHHHHHHhCCCCchhHH-HHHHHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHH
Q 036003 237 -LLGSLDLGKWIHEYIKKYGLDKYVKVN-TALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMF 314 (558)
Q Consensus 237 -~~~~~~~a~~~~~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~ 314 (558)
-..+...|...-.+..+ +.|+..-- -.-..++++.|++.++-.+++.+-+..++.--..+-.+.+.|+ .++.-+
T Consensus 240 ~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~lY~~ar~gd--ta~dRl 315 (531)
T COG3898 240 LLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIALLYVRARSGD--TALDRL 315 (531)
T ss_pred HhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHHHHHHhcCCC--cHHHHH
Confidence 12244455555444444 34443221 2235678899999999999998875433332223333344444 444444
Q ss_pred HHHHH-CCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhh-cCCHHHHHHHHHhC
Q 036003 315 EEMMK-AQVSPDE-ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR-AGRLDEAYRFIDEL 388 (558)
Q Consensus 315 ~~m~~-~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~ 388 (558)
++..+ ..++||. .+...+..+-...|++..|..--+... ...|....|..|.+.-.. .|+-.++...+-+.
T Consensus 316 kRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa~---r~~pres~~lLlAdIeeAetGDqg~vR~wlAqa 389 (531)
T COG3898 316 KRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAAA---REAPRESAYLLLADIEEAETGDQGKVRQWLAQA 389 (531)
T ss_pred HHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHHh---hhCchhhHHHHHHHHHhhccCchHHHHHHHHHH
Confidence 44433 1255554 566677777888899888877666554 557888888888876554 49999999998876
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.56 E-value=0.079 Score=50.15 Aligned_cols=111 Identities=13% Similarity=0.157 Sum_probs=87.6
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 036003 327 ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSS 406 (558)
Q Consensus 327 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~ 406 (558)
.+.+..|.-|...|....|.++-.+. .+ |+...|...+.+|+..++|++-.++... +..+.-|..++.+|..
T Consensus 178 ~Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~ 249 (319)
T PF04840_consen 178 LSLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLK 249 (319)
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHH
Confidence 45566677777889888888776555 33 7889999999999999999988887654 3355778889999999
Q ss_pred cCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHH
Q 036003 407 HNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLM 454 (558)
Q Consensus 407 ~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 454 (558)
.|+..+|..+..+ ..+..-+..|.+.|+|.+|.+.--+.
T Consensus 250 ~~~~~eA~~yI~k---------~~~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 250 YGNKKEASKYIPK---------IPDEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred CCCHHHHHHHHHh---------CChHHHHHHHHHCCCHHHHHHHHHHc
Confidence 9999999999887 22467788899999999998765444
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=97.53 E-value=0.0027 Score=54.56 Aligned_cols=131 Identities=14% Similarity=0.172 Sum_probs=82.6
Q ss_pred CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHH
Q 036003 290 DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPD--EITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGC 367 (558)
Q Consensus 290 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~ 367 (558)
....+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+.... .+.+...+..
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~ 111 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL--NPKQPSALNN 111 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHH
Confidence 445567777777778888888888887776433222 346666777777778888888777777652 2234455556
Q ss_pred HHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCC
Q 036003 368 MVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGR 443 (558)
Q Consensus 368 li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 443 (558)
+...+...|+...+..-++.. ...+++|.+++++++..+|++ |..++..+...|+
T Consensus 112 lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 112 IAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 666666666655544322221 113677888888888888876 5555555555543
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.52 E-value=0.00087 Score=60.26 Aligned_cols=97 Identities=14% Similarity=0.154 Sum_probs=80.3
Q ss_pred HHHHHHCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCC-ChhHHHHHHHHHhhc
Q 036003 298 IVAYATHGQGHKSILMFEEMMKAQVSP-DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVP-GIKHYGCMVDLLGRA 375 (558)
Q Consensus 298 i~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~ 375 (558)
..-+.+.+++.+|+..|.+.++ +.| |.+-|..-..+|++.|.++.|++-.+.... +.| ....|..|..+|...
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~--l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~---iDp~yskay~RLG~A~~~~ 162 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIE--LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALS---IDPHYSKAYGRLGLAYLAL 162 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHh--cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHh---cChHHHHHHHHHHHHHHcc
Confidence 4457788999999999999999 455 567788888999999999999988887764 344 367899999999999
Q ss_pred CCHHHHHHHHHhC-CCCCCHHHHHH
Q 036003 376 GRLDEAYRFIDEL-PIKSTPILWRT 399 (558)
Q Consensus 376 g~~~~A~~~~~~~-~~~~~~~~~~~ 399 (558)
|++++|++.|++. .+.|+-.+|..
T Consensus 163 gk~~~A~~aykKaLeldP~Ne~~K~ 187 (304)
T KOG0553|consen 163 GKYEEAIEAYKKALELDPDNESYKS 187 (304)
T ss_pred CcHHHHHHHHHhhhccCCCcHHHHH
Confidence 9999999999987 77787666654
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=97.51 E-value=0.0055 Score=55.57 Aligned_cols=104 Identities=11% Similarity=0.088 Sum_probs=86.7
Q ss_pred CCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHccCCCCcccHH
Q 036003 358 IVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIK-STPILWRTLLSSCSSH---NNLGLAKQVIERIFELDDSHGGDYV 432 (558)
Q Consensus 358 ~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~~~~~~~~~ 432 (558)
-+-|...|-.|...|...|+++.|..-|.+. ... +++..+..+..++..+ ....++..+|++++..+|.+..+..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~ 231 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALS 231 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHH
Confidence 3557899999999999999999999999887 333 3566666666665433 3568899999999999999999999
Q ss_pred hHHHHHHhcCChHHHHHHHHHHHhCCCcc
Q 036003 433 ILSNLCARAGRWEDVDYLRKLMKDRGVLK 461 (558)
Q Consensus 433 ~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 461 (558)
.|...+...|++.+|...|+.|.+.....
T Consensus 232 lLA~~afe~g~~~~A~~~Wq~lL~~lp~~ 260 (287)
T COG4235 232 LLAFAAFEQGDYAEAAAAWQMLLDLLPAD 260 (287)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcCCCC
Confidence 99999999999999999999999865543
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.00033 Score=48.93 Aligned_cols=61 Identities=23% Similarity=0.259 Sum_probs=49.6
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCc
Q 036003 368 MVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHG 428 (558)
Q Consensus 368 li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 428 (558)
+...+.+.|++++|.+.|+++ ...| +...+..+..++...|++++|...|+++++..|+++
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 456788899999999999987 4445 567888889999999999999999999999988764
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.49 E-value=0.0017 Score=49.30 Aligned_cols=79 Identities=8% Similarity=0.098 Sum_probs=66.1
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHccC--------ChHHHHHHHHHchhhcCCCCChhHH
Q 036003 295 SAMIVAYATHGQGHKSILMFEEMMKAQV-SPDEITFLGLLYACSHTG--------LVDEGWNYFYSMRDKYGIVPGIKHY 365 (558)
Q Consensus 295 ~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~~~~~~ll~~~~~~g--------~~~~a~~~~~~~~~~~~~~~~~~~~ 365 (558)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++.+.++.. ++...+.+|+.|... +++|+..+|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~-~lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSN-KLKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHh-ccCCcHHHH
Confidence 4456666777999999999999999999 899999999999877542 355678899999886 899999999
Q ss_pred HHHHHHHhh
Q 036003 366 GCMVDLLGR 374 (558)
Q Consensus 366 ~~li~~~~~ 374 (558)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 999988765
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=97.46 E-value=0.00035 Score=51.84 Aligned_cols=79 Identities=15% Similarity=0.261 Sum_probs=35.5
Q ss_pred CCChHHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCC-ChhHHHHHHHHHhhcCCHHHH
Q 036003 304 HGQGHKSILMFEEMMKAQVS-PDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVP-GIKHYGCMVDLLGRAGRLDEA 381 (558)
Q Consensus 304 ~~~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A 381 (558)
.|+++.|+.+++++.+.... |+...+..+..++.+.|++++|..+++. . ...+ +....-.+..++.+.|++++|
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~---~~~~~~~~~~~l~a~~~~~l~~y~eA 77 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-L---KLDPSNPDIHYLLARCLLKLGKYEEA 77 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-H---THHHCHHHHHHHHHHHHHHTT-HHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-h---CCCCCCHHHHHHHHHHHHHhCCHHHH
Confidence 35555555555555553221 1223333345555555555555555555 1 1111 122333334555555555555
Q ss_pred HHHHH
Q 036003 382 YRFID 386 (558)
Q Consensus 382 ~~~~~ 386 (558)
+++|+
T Consensus 78 i~~l~ 82 (84)
T PF12895_consen 78 IKALE 82 (84)
T ss_dssp HHHHH
T ss_pred HHHHh
Confidence 55554
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.45 E-value=0.0039 Score=58.24 Aligned_cols=133 Identities=11% Similarity=0.091 Sum_probs=97.5
Q ss_pred HhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHccCChHHHHHHHHHchhhcCCCCChhHHHHHHH
Q 036003 292 QAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYA-CSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVD 370 (558)
Q Consensus 292 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 370 (558)
.+|..++...-+.+..+.|..+|.+..+.+ ..+...|...... +...++.+.|..+|+...+ .+..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk--~f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLK--KFPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHH--HHTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHH
Confidence 467778888888888888999999888543 2223333333333 3335777789999999997 45567788899999
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC
Q 036003 371 LLGRAGRLDEAYRFIDEL-PIKST----PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH 427 (558)
Q Consensus 371 ~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 427 (558)
.+.+.|+.+.|..+|++. ..-+. ...|...+..-.+.|+.+.+..+.+++.+.-|.+
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~ 140 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPED 140 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhh
Confidence 999999999999999987 22233 3589999999999999999999999998877663
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0017 Score=63.03 Aligned_cols=119 Identities=8% Similarity=0.051 Sum_probs=80.3
Q ss_pred CCChHHHHHHHHHHHHhCCChHHHHHHHhccCC-C-----CcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHH
Q 036003 155 LNSNLYVCTTLINLYAECSDVEAARRIFENISE-P-----CVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTM 228 (558)
Q Consensus 155 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~ 228 (558)
.+.+......+++.+....+++.+..++.+... + -..|.+++++.|.+.|..++++.++..=..-|+-||..++
T Consensus 62 ~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~ 141 (429)
T PF10037_consen 62 KPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSF 141 (429)
T ss_pred CCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhH
Confidence 344555666667777667777777777666553 1 1234567777778877777887777777777777888888
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 036003 229 LSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKC 273 (558)
Q Consensus 229 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 273 (558)
+.||..+.+.|++..|.++...|...+...+..++..-+.++.+.
T Consensus 142 n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 142 NLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 888888888888887777777776666555555554444444443
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00017 Score=51.05 Aligned_cols=52 Identities=10% Similarity=0.263 Sum_probs=41.1
Q ss_pred HhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 405 SSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 405 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
...|++++|++.|+++++..|.+...+..++.+|.+.|++++|..+++++..
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4567888888888888888888888888888888888888888888877665
|
... |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=97.41 E-value=0.00053 Score=49.20 Aligned_cols=59 Identities=17% Similarity=0.120 Sum_probs=51.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhCCC
Q 036003 401 LSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGV 459 (558)
Q Consensus 401 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 459 (558)
...|.+.+++++|.++++++++.+|.++..+...+.+|.+.|++++|.+.+++..+.+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 35678889999999999999999999999999999999999999999999998886443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.39 E-value=0.0011 Score=61.85 Aligned_cols=129 Identities=11% Similarity=0.002 Sum_probs=80.8
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHch---hhcCCC-CChhHHHHHHHHHhhcCCHHHHHHHHHhC-------CCC-CCH
Q 036003 327 ITFLGLLYACSHTGLVDEGWNYFYSMR---DKYGIV-PGIKHYGCMVDLLGRAGRLDEAYRFIDEL-------PIK-STP 394 (558)
Q Consensus 327 ~~~~~ll~~~~~~g~~~~a~~~~~~~~---~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~-~~~ 394 (558)
..|..|...|.-.|+++.|+...+.-. +.+|-. .....+..|.+++.-.|+++.|.+.|+.- +.+ ...
T Consensus 196 Ra~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEA 275 (639)
T KOG1130|consen 196 RAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEA 275 (639)
T ss_pred chhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHH
Confidence 345556666666777887776554322 112221 12345667777777788888887777653 211 133
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHccC------CCCcccHHhHHHHHHhcCChHHHHHHHHHHH
Q 036003 395 ILWRTLLSSCSSHNNLGLAKQVIERIFELD------DSHGGDYVILSNLCARAGRWEDVDYLRKLMK 455 (558)
Q Consensus 395 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 455 (558)
.+..+|.++|.-..++++|+.++.+-+.+- .....++.+|+.+|...|..++|..+.+.-.
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 456677777877778888888877754432 2223567788888888888888877765543
|
|
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.32 E-value=0.0025 Score=59.48 Aligned_cols=129 Identities=13% Similarity=0.123 Sum_probs=99.4
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhh-cCCHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 036003 327 ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR-AGRLDEAYRFIDEL--PIKSTPILWRTLLSS 403 (558)
Q Consensus 327 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~ 403 (558)
..|..++...-+.+..+.|..+|.+.++. -..+..+|......-.+ .++.+.|.++|+.. ....+...|...++.
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 35777888888888899999999999853 23345566666555334 56677799999997 344577889999999
Q ss_pred HHhcCCHHHHHHHHHHHHccCCCCc---ccHHhHHHHHHhcCChHHHHHHHHHHHhC
Q 036003 404 CSSHNNLGLAKQVIERIFELDDSHG---GDYVILSNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 404 ~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
+...++.+.|..+|++++..-+... ..|...+..-.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999998765543 47888999889999999999999888763
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=97.27 E-value=0.0072 Score=51.76 Aligned_cols=63 Identities=10% Similarity=0.221 Sum_probs=32.3
Q ss_pred HhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHccCChHHHHHHHHHchh
Q 036003 292 QAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPD--EITFLGLLYACSHTGLVDEGWNYFYSMRD 354 (558)
Q Consensus 292 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 354 (558)
..|..+...+...|++++|+..|++.......|. ..++..+...+...|++++|...++....
T Consensus 36 ~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~ 100 (168)
T CHL00033 36 FTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALE 100 (168)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3445555555555666666666665554321111 13444555555555555555555555543
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.26 E-value=0.059 Score=49.06 Aligned_cols=52 Identities=12% Similarity=0.029 Sum_probs=23.5
Q ss_pred HHHHHCCChHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 036003 299 VAYATHGQGHKSILMFEEMMKA--QVSPDEITFLGLLYACSHTGLVDEGWNYFY 350 (558)
Q Consensus 299 ~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 350 (558)
.-|.+.|.+..|..-++.+.+. +.+........++.+|...|..++|.+...
T Consensus 183 ~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~ 236 (243)
T PRK10866 183 EYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAK 236 (243)
T ss_pred HHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 3444555555555555555442 111122334444455555555555544443
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.25 E-value=0.0017 Score=55.88 Aligned_cols=105 Identities=11% Similarity=0.146 Sum_probs=65.3
Q ss_pred CCCChhHHHHHHHHhhcC--CCCCCHHHHHHHHccCCC----CCcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCc
Q 036003 49 LQNDLNVLTKLINFCTQN--PTTSSMEHAHLLFDRIPE----PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDD 122 (558)
Q Consensus 49 ~~~~~~~~~~li~~~~~~--~~~~~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 122 (558)
-..+..++..+|..|.+. +..|.++-....+..|.+ .|..+|+.|++.+=+ |.+- -..+|+.+-
T Consensus 43 ~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-p~n~fQ~~F-------- 112 (228)
T PF06239_consen 43 QAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-PRNFFQAEF-------- 112 (228)
T ss_pred ccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-cccHHHHHh--------
Confidence 346667777777766654 223555555555555543 566677777766654 2221 111111111
Q ss_pred ccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC
Q 036003 123 YSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSD 174 (558)
Q Consensus 123 ~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 174 (558)
-.. ..+.+-|++++++|...|+-||..++..|++.+++.+.
T Consensus 113 ----------~hy-p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 113 ----------MHY-PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred ----------ccC-cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 111 15678899999999999999999999999999876655
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.29 Score=49.55 Aligned_cols=134 Identities=15% Similarity=0.067 Sum_probs=64.6
Q ss_pred ccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCCC-----CcchHHHHHHHHHHCCCccHHHHH
Q 036003 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEP-----CVVSYNAIITAYARSSRPNEALSL 212 (558)
Q Consensus 138 ~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~ 212 (558)
|.+++|++++-++-++. ..+..+.+.||+-...++++.-... -..+|+.+...+.....|++|.+.
T Consensus 748 g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~y 818 (1189)
T KOG2041|consen 748 GEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKY 818 (1189)
T ss_pred cchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66777777776665443 2345555566666665555543220 112344444444444444444444
Q ss_pred HHHHHH---------------------CCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 036003 213 FRELQE---------------------RNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHA 271 (558)
Q Consensus 213 ~~~m~~---------------------~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 271 (558)
|..-.. ..++-+....-.+...+...|.-++|.+.+-+- +.+ .+-+..+.
T Consensus 819 Y~~~~~~e~~~ecly~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~---s~p------kaAv~tCv 889 (1189)
T KOG2041|consen 819 YSYCGDTENQIECLYRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRR---SLP------KAAVHTCV 889 (1189)
T ss_pred HHhccchHhHHHHHHHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhc---cCc------HHHHHHHH
Confidence 332210 112334444455555666666666655544321 111 12344555
Q ss_pred hcCCHHHHHHHHhccCCC
Q 036003 272 KCGRLDDAVSVFDNMSGK 289 (558)
Q Consensus 272 ~~g~~~~A~~~~~~~~~~ 289 (558)
..++|.+|.++-++..-|
T Consensus 890 ~LnQW~~avelaq~~~l~ 907 (1189)
T KOG2041|consen 890 ELNQWGEAVELAQRFQLP 907 (1189)
T ss_pred HHHHHHHHHHHHHhccch
Confidence 556666666665555444
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=97.20 E-value=0.001 Score=47.08 Aligned_cols=65 Identities=12% Similarity=0.180 Sum_probs=54.2
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-CHHHHHHHHHHHHccCC
Q 036003 361 GIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHN-NLGLAKQVIERIFELDD 425 (558)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~ 425 (558)
+...|..+...+...|++++|+..|++. ...| +...|..+..++...| ++++|++.++++++++|
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4567888888899999999999999887 3344 5678888999999999 79999999999998876
|
... |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=97.19 E-value=0.0047 Score=50.96 Aligned_cols=89 Identities=17% Similarity=0.081 Sum_probs=76.8
Q ss_pred HHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChH
Q 036003 368 MVDLLGRAGRLDEAYRFIDEL-PI-KSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWE 445 (558)
Q Consensus 368 li~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 445 (558)
..--+-..|++++|..+|.-+ -. .-+..-|..|..++...+++++|...|..+..++++++..+...+.+|...|+.+
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~agqC~l~l~~~~ 122 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFFTGQCQLLMRKAA 122 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccchHHHHHHHhCCHH
Confidence 344456789999999999887 21 2356678888899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 036003 446 DVDYLRKLMKD 456 (558)
Q Consensus 446 ~A~~~~~~m~~ 456 (558)
.|...|+...+
T Consensus 123 ~A~~~f~~a~~ 133 (165)
T PRK15331 123 KARQCFELVNE 133 (165)
T ss_pred HHHHHHHHHHh
Confidence 99999998876
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=97.18 E-value=0.013 Score=48.22 Aligned_cols=89 Identities=6% Similarity=-0.031 Sum_probs=54.8
Q ss_pred HHHHHHhcCCHHHHHHHHhccCCC---CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCCh
Q 036003 266 LIDMHAKCGRLDDAVSVFDNMSGK---DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLV 342 (558)
Q Consensus 266 l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~ 342 (558)
+...+...|++++|..+|+.+..- +..-|-.|..++...|++++|+..|........ -|...+-.+..++...|+.
T Consensus 41 ~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~-ddp~~~~~ag~c~L~lG~~ 119 (157)
T PRK15363 41 YAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKI-DAPQAPWAAAECYLACDNV 119 (157)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCC-CCchHHHHHHHHHHHcCCH
Confidence 444455666666666666655422 444566666666666777777777776666432 2445666666666777777
Q ss_pred HHHHHHHHHchhh
Q 036003 343 DEGWNYFYSMRDK 355 (558)
Q Consensus 343 ~~a~~~~~~~~~~ 355 (558)
+.|.+.|+.....
T Consensus 120 ~~A~~aF~~Ai~~ 132 (157)
T PRK15363 120 CYAIKALKAVVRI 132 (157)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777666654
|
|
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=97.17 E-value=0.016 Score=58.94 Aligned_cols=135 Identities=10% Similarity=0.018 Sum_probs=97.7
Q ss_pred CCCCCHHHHHHHHHHHHcc-----CChHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHhhc--------CCHHHHHHHHH
Q 036003 321 QVSPDEITFLGLLYACSHT-----GLVDEGWNYFYSMRDKYGIVPG-IKHYGCMVDLLGRA--------GRLDEAYRFID 386 (558)
Q Consensus 321 g~~p~~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~--------g~~~~A~~~~~ 386 (558)
+.+.+...|...+++.... +....|..+|++..+ ..|+ ...|..+..++... ++...+.+..+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~---ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK---SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH---hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 3556778888888875443 337789999999985 3554 44555544444322 22344555555
Q ss_pred hC----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhCCC
Q 036003 387 EL----PIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGV 459 (558)
Q Consensus 387 ~~----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 459 (558)
+. ....++..|..+.-.....|++++|...++++++++| +...|..++.+|...|+.++|.+.+++....+.
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 43 1233557788777777778999999999999999998 578999999999999999999999998876543
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.19 Score=45.72 Aligned_cols=66 Identities=12% Similarity=0.062 Sum_probs=42.6
Q ss_pred CcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHH-HH---HHHHHHHhccCChHHHHHHHHHHHHhCC
Q 036003 189 CVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDV-TM---LSALSSCALLGSLDLGKWIHEYIKKYGL 256 (558)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~---~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 256 (558)
+...+-.....+.+.|++++|.+.|+++... -|+.. .. ..+..++.+.+++++|...+++..+...
T Consensus 31 ~~~~~Y~~A~~~~~~g~y~~Ai~~f~~l~~~--yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~~P 100 (243)
T PRK10866 31 PPSEIYATAQQKLQDGNWKQAITQLEALDNR--YPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNP 100 (243)
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCc
Confidence 3333434555567778888888888888775 33332 21 3455667778888888888887776643
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.14 E-value=0.09 Score=52.98 Aligned_cols=189 Identities=13% Similarity=0.083 Sum_probs=97.5
Q ss_pred cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-----CHHhHHHHHHHHHHCCChHHHHH
Q 036003 238 LGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK-----DTQAWSAMIVAYATHGQGHKSIL 312 (558)
Q Consensus 238 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~~~~~~~~~a~~ 312 (558)
-|.+++|++++-.+-+++ .-+..+.+.|+|-...++++.-... -..+|+.+...++....+++|.+
T Consensus 747 ~g~feeaek~yld~drrD---------LAielr~klgDwfrV~qL~r~g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~ 817 (1189)
T KOG2041|consen 747 YGEFEEAEKLYLDADRRD---------LAIELRKKLGDWFRVYQLIRNGGSDDDDEGKEDAFRNIGETFAEMMEWEEAAK 817 (1189)
T ss_pred hcchhHhhhhhhccchhh---------hhHHHHHhhhhHHHHHHHHHccCCCcchHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 366666666666655443 2345566666666666666543322 13456666666666666666666
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 036003 313 MFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKS 392 (558)
Q Consensus 313 ~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 392 (558)
.|..-.. ....+.++.+...+++-+.+-..+ +-+....-.+.+++.+.|.-++|.+.+-+-. .|
T Consensus 818 yY~~~~~---------~e~~~ecly~le~f~~LE~la~~L------pe~s~llp~~a~mf~svGMC~qAV~a~Lr~s-~p 881 (1189)
T KOG2041|consen 818 YYSYCGD---------TENQIECLYRLELFGELEVLARTL------PEDSELLPVMADMFTSVGMCDQAVEAYLRRS-LP 881 (1189)
T ss_pred HHHhccc---------hHhHHHHHHHHHhhhhHHHHHHhc------CcccchHHHHHHHHHhhchHHHHHHHHHhcc-Cc
Confidence 6654321 113445555555555444433333 2344455556666666666666666665543 12
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC-----------CcccHHhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 393 TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS-----------HGGDYVILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 393 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
. ..+.+|...+++.+|.++.++..-.... ...-..--+..+.++|++-+|.+++.+|.+
T Consensus 882 k-----aAv~tCv~LnQW~~avelaq~~~l~qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae 951 (1189)
T KOG2041|consen 882 K-----AAVHTCVELNQWGEAVELAQRFQLPQVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAE 951 (1189)
T ss_pred H-----HHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhH
Confidence 1 2344455555555555554442100000 000122334556666776666666666643
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.00063 Score=48.01 Aligned_cols=49 Identities=16% Similarity=0.166 Sum_probs=23.9
Q ss_pred ccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 036003 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL 388 (558)
Q Consensus 338 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 388 (558)
..|++++|.++|+.+... .+-+...+..++.+|.+.|++++|.++++++
T Consensus 3 ~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~ 51 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQR--NPDNPEARLLLAQCYLKQGQYDEAEELLERL 51 (68)
T ss_dssp HTTHHHHHHHHHHHHHHH--TTTSHHHHHHHHHHHHHTT-HHHHHHHHHCC
T ss_pred hccCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 345555555555555442 2224444445555555555555555555555
|
... |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0043 Score=56.84 Aligned_cols=95 Identities=9% Similarity=0.033 Sum_probs=65.9
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCc---ccHHhH
Q 036003 363 KHYGCMVDLLGRAGRLDEAYRFIDEL-PIKST----PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHG---GDYVIL 434 (558)
Q Consensus 363 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l 434 (558)
..|..-+..+.+.|++++|...|+.+ ...|+ +..+.-+..+|...|++++|...|+++++..|.++ .++..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 34555555555667888888777776 22333 24566677788888888888888888887776654 345556
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC
Q 036003 435 SNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 435 ~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
+.+|...|++++|.++++++.+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 77777888888888888877653
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.023 Score=50.14 Aligned_cols=140 Identities=7% Similarity=0.024 Sum_probs=102.9
Q ss_pred chHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHH-----H
Q 036003 191 VSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNT-----A 265 (558)
Q Consensus 191 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~-----~ 265 (558)
...+.++..+.-.|.+.-.+..+++.++...+.++.....+.+.-.+.||.+.|..+|+.+.+..-..+....+ .
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 34566777777788888899999999887666678888888999999999999999999887654334433333 3
Q ss_pred HHHHHHhcCCHHHHHHHHhccCCC---CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 036003 266 LIDMHAKCGRLDDAVSVFDNMSGK---DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGL 332 (558)
Q Consensus 266 l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 332 (558)
....|.-.+++..|...|+++... |+..-|.-.-+..-.|+..+|++.++.|.+. .|...+-+++
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhH
Confidence 344566778888888888887644 5666666666666678889999999999884 4555444433
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.11 E-value=0.0048 Score=53.16 Aligned_cols=96 Identities=7% Similarity=0.099 Sum_probs=64.6
Q ss_pred HHHhcc--CCCCcchHHHHHHHHHH-----CCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc--------------
Q 036003 180 RIFENI--SEPCVVSYNAIITAYAR-----SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALL-------------- 238 (558)
Q Consensus 180 ~~~~~~--~~~~~~~~~~li~~~~~-----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-------------- 238 (558)
..|+.. ...+..+|..++..|.+ .|..+=....+..|.+-|+.-|..+|+.|++.+=+.
T Consensus 35 ~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~h 114 (228)
T PF06239_consen 35 ELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMH 114 (228)
T ss_pred HHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhcc
Confidence 344444 23555566666666554 355666666677777777777777887777766442
Q ss_pred --CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 036003 239 --GSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGR 275 (558)
Q Consensus 239 --~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 275 (558)
.+-+-|.+++++|...|+-||..++..+++.+++.+.
T Consensus 115 yp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 115 YPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred CcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 1345677888888888888888888888888866553
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=97.05 E-value=0.025 Score=44.69 Aligned_cols=106 Identities=18% Similarity=0.117 Sum_probs=62.1
Q ss_pred HHHHHHHCCCccHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCC--CchhHHHHHHHHHH
Q 036003 196 IITAYARSSRPNEALSLFRELQERNLKPT--DVTMLSALSSCALLGSLDLGKWIHEYIKKYGLD--KYVKVNTALIDMHA 271 (558)
Q Consensus 196 li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~ 271 (558)
+..++-..|+.++|+.+|++....|...+ ...+..+...+...|++++|..+++........ .+......+.-++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 44556677888888888888877775544 234556667777778888888887777654211 12222222334556
Q ss_pred hcCCHHHHHHHHhccCCCCHHhHHHHHHHH
Q 036003 272 KCGRLDDAVSVFDNMSGKDTQAWSAMIVAY 301 (558)
Q Consensus 272 ~~g~~~~A~~~~~~~~~~~~~~~~~li~~~ 301 (558)
..|+.++|.+.+-....++...|..-|..|
T Consensus 87 ~~gr~~eAl~~~l~~la~~~~~y~ra~~~y 116 (120)
T PF12688_consen 87 NLGRPKEALEWLLEALAETLPRYRRAIRFY 116 (120)
T ss_pred HCCCHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 667777776665544433333444333333
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=97.04 E-value=0.0025 Score=59.60 Aligned_cols=257 Identities=12% Similarity=0.073 Sum_probs=153.7
Q ss_pred HHHhcCCCchHHHHHHHHhHHCCCCCCcc----cHHHHHHHHHhcCcccHHHHHHHHHHHHH--h--CC-CChHHHHHHH
Q 036003 95 RGYSRSKTPIRAIFLFVELLNSGLLPDDY----SFPSLLKACACVGAEALEEGKQLHCFAIK--L--GL-NSNLYVCTTL 165 (558)
Q Consensus 95 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~~~~~~~~a~~~~~~~~~--~--g~-~~~~~~~~~l 165 (558)
.-+++.|+.+..+.+|+...+.|-. |.. .|..|-++|... +++++|.+++..=+. . |- .-.......|
T Consensus 25 ERLck~gdcraGv~ff~aA~qvGTe-Dl~tLSAIYsQLGNAyfyL--~DY~kAl~yH~hDltlar~lgdklGEAKssgNL 101 (639)
T KOG1130|consen 25 ERLCKMGDCRAGVDFFKAALQVGTE-DLSTLSAIYSQLGNAYFYL--KDYEKALKYHTHDLTLARLLGDKLGEAKSSGNL 101 (639)
T ss_pred HHHHhccchhhhHHHHHHHHHhcch-HHHHHHHHHHHhcchhhhH--hhHHHHHhhhhhhHHHHHHhcchhccccccccc
Confidence 4578889999999999988887644 433 345555666666 788888887643221 1 10 0122233445
Q ss_pred HHHHHhCCChHHHHHHHhccCC---------CCcchHHHHHHHHHHCCCc--------------------cHHHHHHHHH
Q 036003 166 INLYAECSDVEAARRIFENISE---------PCVVSYNAIITAYARSSRP--------------------NEALSLFREL 216 (558)
Q Consensus 166 l~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~g~~--------------------~~A~~~~~~m 216 (558)
.+.+--.|.+++|.....+-.. ....++..+...|...|+. +.|.++|.+=
T Consensus 102 GNtlKv~G~fdeA~~cc~rhLd~areLgDrv~e~RAlYNlgnvYhakGk~~g~~~pee~g~f~~ev~~al~~Av~fy~eN 181 (639)
T KOG1130|consen 102 GNTLKVKGAFDEALTCCFRHLDFARELGDRVLESRALYNLGNVYHAKGKCTGLEAPEEKGAFNAEVTSALENAVKFYMEN 181 (639)
T ss_pred cchhhhhcccchHHHHHHHHhHHHHHHhHHHhhhHHHhhhhhhhhhcccccCCCChhhcccccHHHHHHHHHHHHHHHHH
Confidence 5555666777776544332211 1223444466666655432 2344444331
Q ss_pred ----HHCCCC-CCHHHHHHHHHHHhccCChHHHHHHHHHHH----HhCCC-CchhHHHHHHHHHHhcCCHHHHHHHHhcc
Q 036003 217 ----QERNLK-PTDVTMLSALSSCALLGSLDLGKWIHEYIK----KYGLD-KYVKVNTALIDMHAKCGRLDDAVSVFDNM 286 (558)
Q Consensus 217 ----~~~~~~-p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~----~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 286 (558)
.+.|-. .--..|..|.+.|.-.|+++.|....+.-. +.|-. ..-..+..|.+++.-.|+++.|.+.|+..
T Consensus 182 L~l~~~lgDr~aqGRa~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~t 261 (639)
T KOG1130|consen 182 LELSEKLGDRLAQGRAYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLT 261 (639)
T ss_pred HHHHHHhhhHHhhcchhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHH
Confidence 111100 011234455555566788999887766433 22321 12345677888999999999999988764
Q ss_pred C-------CC--CHHhHHHHHHHHHHCCChHHHHHHHHHHHH----CC-CCCCHHHHHHHHHHHHccCChHHHHHHHHHc
Q 036003 287 S-------GK--DTQAWSAMIVAYATHGQGHKSILMFEEMMK----AQ-VSPDEITFLGLLYACSHTGLVDEGWNYFYSM 352 (558)
Q Consensus 287 ~-------~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 352 (558)
. .+ ...+..+|...|.-..++++|+.++.+-.. .+ ..-....+.+|..++...|..++|+.+.+.-
T Consensus 262 l~LAielg~r~vEAQscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~h 341 (639)
T KOG1130|consen 262 LNLAIELGNRTVEAQSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELH 341 (639)
T ss_pred HHHHHHhcchhHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHH
Confidence 2 23 344566778888888889999888876443 11 1224567888999999999999988776654
Q ss_pred hh
Q 036003 353 RD 354 (558)
Q Consensus 353 ~~ 354 (558)
.+
T Consensus 342 l~ 343 (639)
T KOG1130|consen 342 LR 343 (639)
T ss_pred HH
Confidence 43
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.99 E-value=0.026 Score=44.59 Aligned_cols=92 Identities=16% Similarity=0.168 Sum_probs=58.3
Q ss_pred HHHHHHHCCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCChHHHHHHHHHchhhcCCCC-ChhHHHHHHHHHh
Q 036003 297 MIVAYATHGQGHKSILMFEEMMKAQVSPDE--ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVP-GIKHYGCMVDLLG 373 (558)
Q Consensus 297 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~ 373 (558)
+..++-..|+.++|+.+|++....|..... ..+-.+...+...|++++|..+|+.....+.-.+ +......+..++.
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~ 86 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALY 86 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHH
Confidence 445666778888888888888887765442 3555666777778888888888887776421100 2222223344566
Q ss_pred hcCCHHHHHHHHHhC
Q 036003 374 RAGRLDEAYRFIDEL 388 (558)
Q Consensus 374 ~~g~~~~A~~~~~~~ 388 (558)
..|+.++|.+.+-..
T Consensus 87 ~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 87 NLGRPKEALEWLLEA 101 (120)
T ss_pred HCCCHHHHHHHHHHH
Confidence 777777777766543
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.35 Score=45.81 Aligned_cols=105 Identities=17% Similarity=0.145 Sum_probs=57.1
Q ss_pred HHHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHH
Q 036003 266 LIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEG 345 (558)
Q Consensus 266 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a 345 (558)
.+.-+...|+...|.++-.+..-+|-.-|...+.+++..++|++-..+... +-++..|..++.+|.+.|...+|
T Consensus 183 Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~~~eA 256 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGNKKEA 256 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCCHHHH
Confidence 344445556666666666666556666666666666666666655543321 11224455566666666666666
Q ss_pred HHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHh
Q 036003 346 WNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDE 387 (558)
Q Consensus 346 ~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~ 387 (558)
..+..++. +..-+..|.++|++.+|.+.--+
T Consensus 257 ~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A~~ 287 (319)
T PF04840_consen 257 SKYIPKIP-----------DEERVEMYLKCGDYKEAAQEAFK 287 (319)
T ss_pred HHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHHHH
Confidence 65555421 13345555666666666554433
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.95 E-value=0.14 Score=43.05 Aligned_cols=113 Identities=21% Similarity=0.236 Sum_probs=51.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCC----CCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCC---CCCCHHHHHHHHHHH
Q 036003 264 TALIDMHAKCGRLDDAVSVFDNMSG----KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ---VSPDEITFLGLLYAC 336 (558)
Q Consensus 264 ~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g---~~p~~~~~~~ll~~~ 336 (558)
-.|..++.+.|+..+|...|++... .|....-.+.++....+++..|...++++.+.. -.|| +...+.+.+
T Consensus 93 ~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~~Ll~aR~l 170 (251)
T COG4700 93 YRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--GHLLFARTL 170 (251)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--chHHHHHHH
Confidence 3344444455555555554444332 244444444444445555555555555554421 1222 222344445
Q ss_pred HccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHH
Q 036003 337 SHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381 (558)
Q Consensus 337 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 381 (558)
...|++.+|+..|+.... .-|+...-......+.++|+.++|
T Consensus 171 aa~g~~a~Aesafe~a~~---~ypg~~ar~~Y~e~La~qgr~~ea 212 (251)
T COG4700 171 AAQGKYADAESAFEVAIS---YYPGPQARIYYAEMLAKQGRLREA 212 (251)
T ss_pred HhcCCchhHHHHHHHHHH---hCCCHHHHHHHHHHHHHhcchhHH
Confidence 555555555555555543 233333333334444555544444
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.92 E-value=0.097 Score=52.30 Aligned_cols=84 Identities=15% Similarity=0.262 Sum_probs=41.9
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHHh-------------
Q 036003 227 TMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQA------------- 293 (558)
Q Consensus 227 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~------------- 293 (558)
+...+...+.+...+..|-++|..|-+. ..++......++|++|.++-+..++--...
T Consensus 749 ~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE~Dr 819 (1081)
T KOG1538|consen 749 PLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAENDR 819 (1081)
T ss_pred HHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccccccccchHHHHhhhhhh
Confidence 3333333344444555555555554332 235555556666666666655554321111
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHH
Q 036003 294 WSAMIVAYATHGQGHKSILMFEEMMK 319 (558)
Q Consensus 294 ~~~li~~~~~~~~~~~a~~~~~~m~~ 319 (558)
+...-.+|.+.|+-.+|..+++++..
T Consensus 820 FeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 820 FEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred HHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 11122345566666777777766654
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.097 Score=46.42 Aligned_cols=133 Identities=14% Similarity=0.032 Sum_probs=74.2
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChh-----HHHHH
Q 036003 294 WSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIK-----HYGCM 368 (558)
Q Consensus 294 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-----~~~~l 368 (558)
.+.++..+.-.|.+.-.+.++.+.++...+-+....+.|.+.-.+.|+.+.|...|+...+. .-..+.. +....
T Consensus 180 my~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~n~ 258 (366)
T KOG2796|consen 180 MYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLMNS 258 (366)
T ss_pred HHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHhhh
Confidence 44555555566667677777777776554445666666666667777777777777765543 2222222 22222
Q ss_pred HHHHhhcCCHHHHHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC
Q 036003 369 VDLLGRAGRLDEAYRFIDELPI--KSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH 427 (558)
Q Consensus 369 i~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 427 (558)
...|.-++++..|...++++.. ..++...|.-.-+..-.|+...|.+.++.+++..|..
T Consensus 259 a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 259 AFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 3345555666666666666521 1233333333333334566666666666666666553
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.66 Score=47.62 Aligned_cols=117 Identities=15% Similarity=0.145 Sum_probs=90.3
Q ss_pred CCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHH
Q 036003 321 QVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTL 400 (558)
Q Consensus 321 g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l 400 (558)
|..-...+.+--+.-+...|+-.+|.++-.+.+ .||...|-.-+.+++..+++++-+++-+..+ .+.-|.-.
T Consensus 679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kweeLekfAkskk---sPIGy~PF 750 (829)
T KOG2280|consen 679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWEELEKFAKSKK---SPIGYLPF 750 (829)
T ss_pred ccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC---CCCCchhH
Confidence 334444566666777788899999988877665 4788899999999999999999888887764 24566678
Q ss_pred HHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHH
Q 036003 401 LSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKL 453 (558)
Q Consensus 401 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 453 (558)
..+|.+.|+.++|.+++-+.-. +.-...+|.+.|++.+|.++--+
T Consensus 751 Ve~c~~~~n~~EA~KYiprv~~--------l~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 751 VEACLKQGNKDEAKKYIPRVGG--------LQEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHHhcccHHHHhhhhhccCC--------hHHHHHHHHHhccHHHHHHHHHH
Confidence 8899999999999998876532 22577889999999998886543
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.0027 Score=52.88 Aligned_cols=68 Identities=18% Similarity=0.236 Sum_probs=54.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHH-----hCCCccCC
Q 036003 396 LWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMK-----DRGVLKVP 463 (558)
Q Consensus 396 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~g~~~~~ 463 (558)
....++..+...|++++|.+++++++..+|-+...|..++.+|...|+..+|.+.|+++. +.|+.|++
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 455677788899999999999999999999999999999999999999999999998874 46888755
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.86 E-value=0.42 Score=45.08 Aligned_cols=273 Identities=14% Similarity=0.110 Sum_probs=160.7
Q ss_pred CCChHHHHHHHhccCC---CCcchHHHHHHH--HHHCCCccHHHHHHHHHHHCCCCCCHH--HHHHHHHHHhccCChHHH
Q 036003 172 CSDVEAARRIFENISE---PCVVSYNAIITA--YARSSRPNEALSLFRELQERNLKPTDV--TMLSALSSCALLGSLDLG 244 (558)
Q Consensus 172 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~--~~~~g~~~~A~~~~~~m~~~~~~p~~~--~~~~ll~~~~~~~~~~~a 244 (558)
.||-..|.+.-.+..+ .|....-.++.+ -.-.|+++.|.+-|+.|... |... -+..|.-...+.|+.+.|
T Consensus 97 AGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaA 173 (531)
T COG3898 97 AGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAA 173 (531)
T ss_pred cCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHH
Confidence 3555555555444331 333333333322 23357777777777777652 2222 223333444566777777
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC-----CCCHHh--HHHHHHHHH---HCCChHHHHHHH
Q 036003 245 KWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS-----GKDTQA--WSAMIVAYA---THGQGHKSILMF 314 (558)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~--~~~li~~~~---~~~~~~~a~~~~ 314 (558)
.++-+..-..-.. -...+...+...+..|+|+.|+++++.-. ++++.- -..|+.+-+ -..+...|...-
T Consensus 174 r~yAe~Aa~~Ap~-l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A 252 (531)
T COG3898 174 RHYAERAAEKAPQ-LPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDA 252 (531)
T ss_pred HHHHHHHHhhccC-CchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 7777766554322 23445667777788888888888877543 223221 122222211 123455555555
Q ss_pred HHHHHCCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHH----HHHHHhCC
Q 036003 315 EEMMKAQVSPDEI-TFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA----YRFIDELP 389 (558)
Q Consensus 315 ~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A----~~~~~~~~ 389 (558)
.+..+ +.||.. .-.....++.+.|+..++-.+++.+-+. .|....+...+ +.+.|+.... .+-++.|+
T Consensus 253 ~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY~--~ar~gdta~dRlkRa~~L~slk 325 (531)
T COG3898 253 LEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLYV--RARSGDTALDRLKRAKKLESLK 325 (531)
T ss_pred HHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHHH--HhcCCCcHHHHHHHHHHHHhcC
Confidence 55544 566653 2334456788999999999999988753 55555543333 3455543222 12233343
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhc-CChHHHHHHHHHHHhC
Q 036003 390 IKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARA-GRWEDVDYLRKLMKDR 457 (558)
Q Consensus 390 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~~ 457 (558)
+.+..+.-.+..+....|++..|..--+.+....|.. ..|..|.++-... |+-.++...+-+..+.
T Consensus 326 -~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pre-s~~lLlAdIeeAetGDqg~vR~wlAqav~A 392 (531)
T COG3898 326 -PNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPRE-SAYLLLADIEEAETGDQGKVRQWLAQAVKA 392 (531)
T ss_pred -ccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCchh-hHHHHHHHHHhhccCchHHHHHHHHHHhcC
Confidence 3355666777788888999999988888888877763 6788888776554 8988888888776654
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.85 E-value=0.0049 Score=59.47 Aligned_cols=63 Identities=14% Similarity=-0.085 Sum_probs=34.2
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcc---cHHhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 394 PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGG---DYVILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 394 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
...|+.+..+|...|++++|+..|+++++++|++.. +|+.++.+|...|+.++|...+++..+
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALe 140 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALR 140 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345555555555555555555555555555555543 255555555555555555555555544
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.44 Score=45.34 Aligned_cols=85 Identities=12% Similarity=0.019 Sum_probs=45.9
Q ss_pred HHHCCChHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHhhcC
Q 036003 301 YATHGQGHKSILMFEEMMKA---QVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPG-IKHYGCMVDLLGRAG 376 (558)
Q Consensus 301 ~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g 376 (558)
..+.|.+.+|.+.|.+.+.. ...|+...|........+.|+.++|+.--++..+ +.+. ...|..-..++...+
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~---iD~syikall~ra~c~l~le 335 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK---IDSSYIKALLRRANCHLALE 335 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh---cCHHHHHHHHHHHHHHHHHH
Confidence 44566677777777766652 2334445555555566667777777666555542 2211 112222233444556
Q ss_pred CHHHHHHHHHhC
Q 036003 377 RLDEAYRFIDEL 388 (558)
Q Consensus 377 ~~~~A~~~~~~~ 388 (558)
++++|.+-|++.
T Consensus 336 ~~e~AV~d~~~a 347 (486)
T KOG0550|consen 336 KWEEAVEDYEKA 347 (486)
T ss_pred HHHHHHHHHHHH
Confidence 666666666654
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.062 Score=47.54 Aligned_cols=161 Identities=14% Similarity=0.145 Sum_probs=82.3
Q ss_pred HHHhcCCHHHHHHHHhccCCC------CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHcc-
Q 036003 269 MHAKCGRLDDAVSVFDNMSGK------DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDE--ITFLGLLYACSHT- 339 (558)
Q Consensus 269 ~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~- 339 (558)
.+...|++++|.+.|+.+... -..+.-.++.++.+.|+++.|...++++.+. -|+. ..+...+.+.+..
T Consensus 14 ~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~--yP~~~~~~~A~Y~~g~~~~~ 91 (203)
T PF13525_consen 14 EALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL--YPNSPKADYALYMLGLSYYK 91 (203)
T ss_dssp HHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH---TT-TTHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCcchhhHHHHHHHHHHH
Confidence 344555555565555555421 1223445566666667777777777766653 2222 1222222222111
Q ss_pred ------------CChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc
Q 036003 340 ------------GLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSH 407 (558)
Q Consensus 340 ------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~ 407 (558)
+...+|...| ..++.-|=......+|...+..+... -...--.+...|.+.
T Consensus 92 ~~~~~~~~~~D~~~~~~A~~~~----------------~~li~~yP~S~y~~~A~~~l~~l~~~-la~~e~~ia~~Y~~~ 154 (203)
T PF13525_consen 92 QIPGILRSDRDQTSTRKAIEEF----------------EELIKRYPNSEYAEEAKKRLAELRNR-LAEHELYIARFYYKR 154 (203)
T ss_dssp HHHHHH-TT---HHHHHHHHHH----------------HHHHHH-TTSTTHHHHHHHHHHHHHH-HHHHHHHHHHHHHCT
T ss_pred hCccchhcccChHHHHHHHHHH----------------HHHHHHCcCchHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHc
Confidence 1112233333 33334444444445554444443100 001112256678889
Q ss_pred CCHHHHHHHHHHHHccCCCCcc---cHHhHHHHHHhcCChHHHH
Q 036003 408 NNLGLAKQVIERIFELDDSHGG---DYVILSNLCARAGRWEDVD 448 (558)
Q Consensus 408 g~~~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~ 448 (558)
|.+..|..-++.+++.-|+++. +...++.+|.+.|..+.|.
T Consensus 155 ~~y~aA~~r~~~v~~~yp~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 155 GKYKAAIIRFQYVIENYPDTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp T-HHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhCChHHHH
Confidence 9999999999999998887654 4667888899998877544
|
|
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.00081 Score=39.54 Aligned_cols=33 Identities=24% Similarity=0.416 Sum_probs=30.5
Q ss_pred HHHHHHccCCCCcccHHhHHHHHHhcCChHHHH
Q 036003 416 VIERIFELDDSHGGDYVILSNLCARAGRWEDVD 448 (558)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 448 (558)
+|+++++++|+++.+|..|+.+|...|++++|.
T Consensus 1 ~y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 1 CYKKAIELNPNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred ChHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhc
Confidence 368899999999999999999999999999986
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.75 E-value=0.18 Score=48.28 Aligned_cols=72 Identities=13% Similarity=0.114 Sum_probs=42.4
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCCC-------CHHhHHHHHHHHHH---CCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036003 265 ALIDMHAKCGRLDDAVSVFDNMSGK-------DTQAWSAMIVAYAT---HGQGHKSILMFEEMMKAQVSPDEITFLGLLY 334 (558)
Q Consensus 265 ~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 334 (558)
.++-.|....+++...++++.+... ....-....-++-+ .|+.++|+.++..+....-.++..+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 3444566777777777777776643 11112223334445 6777777777777555555666667766665
Q ss_pred HH
Q 036003 335 AC 336 (558)
Q Consensus 335 ~~ 336 (558)
.|
T Consensus 226 Iy 227 (374)
T PF13281_consen 226 IY 227 (374)
T ss_pred HH
Confidence 54
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.69 E-value=0.0029 Score=46.02 Aligned_cols=62 Identities=15% Similarity=0.154 Sum_probs=45.5
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHccC----CC---CcccHHhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 395 ILWRTLLSSCSSHNNLGLAKQVIERIFELD----DS---HGGDYVILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 395 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
.+++.+...|...|++++|+..|+++++.. +. ...++..++.+|...|++++|.+.+++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 467777888888888888888888877542 22 234677888888888888888888887643
|
... |
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.68 E-value=0.0025 Score=40.20 Aligned_cols=42 Identities=17% Similarity=0.294 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHH
Q 036003 395 ILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSN 436 (558)
Q Consensus 395 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 436 (558)
.+|..+..+|...|++++|+++|+++++..|+++..+..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 367788899999999999999999999999999888776653
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.64 E-value=0.029 Score=53.04 Aligned_cols=63 Identities=10% Similarity=-0.027 Sum_probs=56.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhC
Q 036003 395 ILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 395 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
.++..+..++.+.+++.+|++.-.++++.+|+|..+...-+.+|...|+++.|+..|+++.+.
T Consensus 258 ~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~ 320 (397)
T KOG0543|consen 258 ACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL 320 (397)
T ss_pred HHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 466778888899999999999999999999999999999999999999999999999999873
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=96.61 E-value=0.043 Score=50.36 Aligned_cols=102 Identities=11% Similarity=0.038 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHchhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC----CHHHHHHH
Q 036003 327 ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVP-GIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS----TPILWRTL 400 (558)
Q Consensus 327 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~----~~~~~~~l 400 (558)
..|...+....+.|++++|...|+.+.+.+.-.+ ....+-.+...|...|++++|...|+.+ ...| ....+..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 3455544444556778888877877776421111 1245566777778888888888887776 1122 23455556
Q ss_pred HHHHHhcCCHHHHHHHHHHHHccCCCCc
Q 036003 401 LSSCSSHNNLGLAKQVIERIFELDDSHG 428 (558)
Q Consensus 401 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 428 (558)
+..+...|+.++|...|+++++..|.+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 6777788888888888888888888754
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.59 E-value=0.35 Score=42.59 Aligned_cols=200 Identities=11% Similarity=0.033 Sum_probs=111.9
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCC--HHhHHHHHHHHHHC
Q 036003 227 TMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKD--TQAWSAMIVAYATH 304 (558)
Q Consensus 227 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~li~~~~~~ 304 (558)
.|.....+|....++++|...+.+..+. .+.+...|. ....++.|.-+.+++.+-+ +..|+--...|..+
T Consensus 33 ~yekAAvafRnAk~feKakdcLlkA~~~-yEnnrslfh-------AAKayEqaamLake~~klsEvvdl~eKAs~lY~E~ 104 (308)
T KOG1585|consen 33 LYEKAAVAFRNAKKFEKAKDCLLKASKG-YENNRSLFH-------AAKAYEQAAMLAKELSKLSEVVDLYEKASELYVEC 104 (308)
T ss_pred HHHHHHHHHHhhccHHHHHHHHHHHHHH-HHhcccHHH-------HHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHh
Confidence 3444555667777777777766655432 111211111 1123344444445444332 23355566777778
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCC----CCChhHHHHHHHHHhhcCCHHH
Q 036003 305 GQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGI----VPGIKHYGCMVDLLGRAGRLDE 380 (558)
Q Consensus 305 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~ 380 (558)
|.++.|-..+++.-+. ....++++|+++|++...-... ..-...+..+.+.+.+..++++
T Consensus 105 GspdtAAmaleKAak~----------------lenv~Pd~AlqlYqralavve~~dr~~ma~el~gk~sr~lVrl~kf~E 168 (308)
T KOG1585|consen 105 GSPDTAAMALEKAAKA----------------LENVKPDDALQLYQRALAVVEEDDRDQMAFELYGKCSRVLVRLEKFTE 168 (308)
T ss_pred CCcchHHHHHHHHHHH----------------hhcCCHHHHHHHHHHHHHHHhccchHHHHHHHHHHhhhHhhhhHHhhH
Confidence 8777776666654431 1233444444544444331110 0112344455566777788888
Q ss_pred HHHHHHhCC-------CCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHccC----CCCcccHHhHHHHHHhcCChHHHH
Q 036003 381 AYRFIDELP-------IKSTP-ILWRTLLSSCSSHNNLGLAKQVIERIFELD----DSHGGDYVILSNLCARAGRWEDVD 448 (558)
Q Consensus 381 A~~~~~~~~-------~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~l~~~~~~~g~~~~A~ 448 (558)
|-..|.+-. .-++. ..|...|-.+....++..|++.++...+.+ +.+..+...|+.+| ..|+.+++.
T Consensus 169 aa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ay-d~gD~E~~~ 247 (308)
T KOG1585|consen 169 AATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAY-DEGDIEEIK 247 (308)
T ss_pred HHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHh-ccCCHHHHH
Confidence 766665541 12232 234555556666779999999999977654 55667788888887 567888777
Q ss_pred HHH
Q 036003 449 YLR 451 (558)
Q Consensus 449 ~~~ 451 (558)
+++
T Consensus 248 kvl 250 (308)
T KOG1585|consen 248 KVL 250 (308)
T ss_pred HHH
Confidence 654
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=96.57 E-value=0.0076 Score=43.08 Aligned_cols=63 Identities=16% Similarity=0.211 Sum_probs=48.8
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccH
Q 036003 369 VDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDY 431 (558)
Q Consensus 369 i~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 431 (558)
-..|.+.+++++|.++++.+ ...| ++..|......+...|++++|.+.|+++++..|.++...
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~ 66 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDAR 66 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHH
Confidence 35677888888888888887 3344 556777788888889999999999999998888765443
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.55 E-value=0.81 Score=44.13 Aligned_cols=409 Identities=13% Similarity=0.080 Sum_probs=214.7
Q ss_pred HHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCCCCc---ccHHHHHHHHhcCCCchHHHHHHHHhH
Q 036003 38 KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDI---VLFNTMARGYSRSKTPIRAIFLFVELL 114 (558)
Q Consensus 38 ~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~m~ 114 (558)
-++.+.+.+ -+.|+.+|-.||..|... +.+++.+++++.|..|-+ .+|..-|++-....+++....+|.+.+
T Consensus 29 lrLRerIkd--NPtnI~S~fqLiq~~~tq---~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL 103 (660)
T COG5107 29 LRLRERIKD--NPTNILSYFQLIQYLETQ---ESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCL 103 (660)
T ss_pred HHHHHHhhc--CchhHHHHHHHHHHHhhh---hhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHH
Confidence 344444433 467789999999999999 999999999999998654 468888888888889999999999988
Q ss_pred HCCCCCCcccHHHHHHHHHhcC---cc-cHHHHHHHHHHHHH-hCCCCh-HHHHHHHHHHH---HhCC------ChHHHH
Q 036003 115 NSGLLPDDYSFPSLLKACACVG---AE-ALEEGKQLHCFAIK-LGLNSN-LYVCTTLINLY---AECS------DVEAAR 179 (558)
Q Consensus 115 ~~g~~p~~~~~~~ll~~~~~~~---~~-~~~~a~~~~~~~~~-~g~~~~-~~~~~~ll~~~---~~~g------~~~~A~ 179 (558)
..... ...|..-+.-..+.. .| .-....+.|+-.+. .++.|- ...|+..+..+ -..| ++|...
T Consensus 104 ~k~l~--ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR 181 (660)
T COG5107 104 KKSLN--LDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIR 181 (660)
T ss_pred hhhcc--HhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHH
Confidence 76444 445555554433321 11 11112233333332 234442 23344433322 2223 344555
Q ss_pred HHHhccCC-C---------CcchHHHHHHHHHH---CC----CccHHHHHHHHHHH--CCCCC----CHHHHHHHHH---
Q 036003 180 RIFENISE-P---------CVVSYNAIITAYAR---SS----RPNEALSLFRELQE--RNLKP----TDVTMLSALS--- 233 (558)
Q Consensus 180 ~~~~~~~~-~---------~~~~~~~li~~~~~---~g----~~~~A~~~~~~m~~--~~~~p----~~~~~~~ll~--- 233 (558)
..+.++.. | |-..|..=+..... .| -+-.|.+.+++... .|+.. +..+++.+-+
T Consensus 182 ~~Y~ral~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~ 261 (660)
T COG5107 182 NGYMRALQTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSD 261 (660)
T ss_pred HHHHHHHcCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhcccccccc
Confidence 66666654 1 11111111111100 01 12234444444432 12211 2222222111
Q ss_pred --------HHhcc-----CC-hHH-HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--C------
Q 036003 234 --------SCALL-----GS-LDL-GKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK--D------ 290 (558)
Q Consensus 234 --------~~~~~-----~~-~~~-a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~------ 290 (558)
--... |+ ..+ .--++++.... +.....+|--.-.-+...++-+.|+...+.-.+. .
T Consensus 262 S~WlNwIkwE~en~l~L~~~~~~qRi~y~~~q~~~y-~~~~~evw~dys~Y~~~isd~q~al~tv~rg~~~spsL~~~ls 340 (660)
T COG5107 262 SNWLNWIKWEMENGLKLGGRPHEQRIHYIHNQILDY-FYYAEEVWFDYSEYLIGISDKQKALKTVERGIEMSPSLTMFLS 340 (660)
T ss_pred chhhhHhhHhhcCCcccCCCcHHHHHHHHHHHHHHH-hhhhHHHHHHHHHHHhhccHHHHHHHHHHhcccCCCchheeHH
Confidence 00000 00 000 01111111111 1112222222222334455666666655543221 1
Q ss_pred ---------HH---hHHHHHHHHHH---CCChHHHHHH------HHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 036003 291 ---------TQ---AWSAMIVAYAT---HGQGHKSILM------FEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYF 349 (558)
Q Consensus 291 ---------~~---~~~~li~~~~~---~~~~~~a~~~------~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 349 (558)
.. +|..++..+.+ .++.+.+... ..++.-....--...|...+++..+..-++.|..+|
T Consensus 341 e~yel~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F 420 (660)
T COG5107 341 EYYELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLF 420 (660)
T ss_pred HHHhhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHH
Confidence 01 12222222221 1111111110 111110001112345667777778888899999999
Q ss_pred HHchhhcC-CCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHH-HHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 036003 350 YSMRDKYG-IVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKSTPIL-WRTLLSSCSSHNNLGLAKQVIERIFELDDS 426 (558)
Q Consensus 350 ~~~~~~~~-~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~~~-~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 426 (558)
-++.+. + +.+++..+++++.-++ .|+...|..+|+-- ..-||... -+-.+..+...++-..|..+|+..++.-..
T Consensus 421 ~k~rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi~inde~naraLFetsv~r~~~ 498 (660)
T COG5107 421 IKLRKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLIRINDEENARALFETSVERLEK 498 (660)
T ss_pred HHHhcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHHHhCcHHHHHHHHHHhHHHHHH
Confidence 999886 5 6678888899988776 57788899999864 33455544 355677778889999999999976654322
Q ss_pred C--cccHHhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 427 H--GGDYVILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 427 ~--~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
+ ...|..++..-..-|+...+..+=++|..
T Consensus 499 ~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e 530 (660)
T COG5107 499 TQLKRIYDKMIEYESMVGSLNNVYSLEERFRE 530 (660)
T ss_pred hhhhHHHHHHHHHHHhhcchHHHHhHHHHHHH
Confidence 2 35688888887888888777666555543
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=96.47 E-value=0.043 Score=43.82 Aligned_cols=50 Identities=10% Similarity=0.150 Sum_probs=37.9
Q ss_pred CCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHH
Q 036003 322 VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDL 371 (558)
Q Consensus 322 ~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 371 (558)
..|+..+..+++.+|+..|++..|.++++.+.+.++++.+..+|..|+.-
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 56777777777888877788888888888877777777777777777654
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=96.43 E-value=0.0054 Score=44.58 Aligned_cols=61 Identities=13% Similarity=0.195 Sum_probs=40.3
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC-------C-CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 036003 363 KHYGCMVDLLGRAGRLDEAYRFIDEL-------P-IKST-PILWRTLLSSCSSHNNLGLAKQVIERIFEL 423 (558)
Q Consensus 363 ~~~~~li~~~~~~g~~~~A~~~~~~~-------~-~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 423 (558)
.+|+.+...|...|++++|++.|++. + ..|+ ..++..+..++...|++++|++.+++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 45566666677777777776666654 1 1122 356777888888888888888888887653
|
... |
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.32 E-value=1.1 Score=43.28 Aligned_cols=117 Identities=14% Similarity=0.115 Sum_probs=73.0
Q ss_pred HHHCCC-hHHHHHHHHHHHHCCCCCC-HHHHHHH----HHHHHc---cCChHHHHHHHHHchhhcCCCCC----hhHHHH
Q 036003 301 YATHGQ-GHKSILMFEEMMKAQVSPD-EITFLGL----LYACSH---TGLVDEGWNYFYSMRDKYGIVPG----IKHYGC 367 (558)
Q Consensus 301 ~~~~~~-~~~a~~~~~~m~~~g~~p~-~~~~~~l----l~~~~~---~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~ 367 (558)
+.+.|. -++|+++++...+ +.|. ...-+.+ =.+|.+ ...+.+-..+-+-+.+ .|++|- ...-|.
T Consensus 389 lW~~g~~dekalnLLk~il~--ft~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e-~gl~~i~i~e~eian~ 465 (549)
T PF07079_consen 389 LWEIGQCDEKALNLLKLILQ--FTNYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITE-VGLTPITISEEEIANF 465 (549)
T ss_pred HHhcCCccHHHHHHHHHHHH--hccccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh-cCCCcccccHHHHHHH
Confidence 344555 7788888888877 3333 2222222 223322 2234444444444444 377763 344555
Q ss_pred HHHH--HhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036003 368 MVDL--LGRAGRLDEAYRFIDEL-PIKSTPILWRTLLSSCSSHNNLGLAKQVIERI 420 (558)
Q Consensus 368 li~~--~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 420 (558)
|.++ +...|++.++.-.-.-+ .+.|++.+|+.++-+.....++++|..++..+
T Consensus 466 LaDAEyLysqgey~kc~~ys~WL~~iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~L 521 (549)
T PF07079_consen 466 LADAEYLYSQGEYHKCYLYSSWLTKIAPSPQAYRLLGLCLMENKRYQEAWEYLQKL 521 (549)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHhhHHHHHHHHHhC
Confidence 5544 45678888886554443 66789999999999999999999999988765
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.7 Score=40.83 Aligned_cols=59 Identities=17% Similarity=0.063 Sum_probs=31.3
Q ss_pred HHHHHHHCCCccHHHHHHHHHHHCCCC--CCHHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 036003 196 IITAYARSSRPNEALSLFRELQERNLK--PTDVTMLSALSSCALLGSLDLGKWIHEYIKKY 254 (558)
Q Consensus 196 li~~~~~~g~~~~A~~~~~~m~~~~~~--p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 254 (558)
....+.+.|++.+|.+.|+.+...-.. --......++.++.+.|+++.|...++...+.
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 344455666677777777666654111 11223344555666666666666666666554
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.28 E-value=0.18 Score=45.97 Aligned_cols=102 Identities=9% Similarity=-0.042 Sum_probs=76.8
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhc---CCHHHHHHHHHhC-CCCC-CHHHHHH
Q 036003 325 DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRA---GRLDEAYRFIDEL-PIKS-TPILWRT 399 (558)
Q Consensus 325 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~---g~~~~A~~~~~~~-~~~~-~~~~~~~ 399 (558)
|...|..|...|...|+++.|..-|....+ -..++...+..+..++..+ ....++..+|+++ ...| |+.+...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~r--L~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALR--LAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 667888888888888888888888888875 3344566666666665433 2456788888887 4444 5566677
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHccCCCCc
Q 036003 400 LLSSCSSHNNLGLAKQVIERIFELDDSHG 428 (558)
Q Consensus 400 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 428 (558)
|...+...|++.+|...|+.|++..|++.
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~ 261 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADD 261 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCC
Confidence 77888999999999999999999887763
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.24 E-value=1.8 Score=44.68 Aligned_cols=303 Identities=13% Similarity=0.040 Sum_probs=158.7
Q ss_pred HHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC---hHHHHHHHhccCC--CCcchHHHHHHHHHH
Q 036003 128 LLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSD---VEAARRIFENISE--PCVVSYNAIITAYAR 202 (558)
Q Consensus 128 ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~---~~~A~~~~~~~~~--~~~~~~~~li~~~~~ 202 (558)
++.-+... +.+..|.++-..+...-.. ...+|.....-+.+..+ -+-+..+-+++.. ....+|..+..-.-.
T Consensus 443 vi~Rl~~r--~~Y~vaIQva~~l~~p~~~-~~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~~~~~iSy~~iA~~Ay~ 519 (829)
T KOG2280|consen 443 VIDRLVDR--HLYSVAIQVAKLLNLPESQ-GDRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAKLTPGISYAAIARRAYQ 519 (829)
T ss_pred hhHHHHhc--chhHHHHHHHHHhCCcccc-ccHHHHHHHHHHHhccCccchHHHHHHHHHhcccCCCceeHHHHHHHHHh
Confidence 44455555 6677777766554321111 14555555555555532 2333444444444 445567777777777
Q ss_pred CCCccHHHHHHHHHHHCCCC----CCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 036003 203 SSRPNEALSLFRELQERNLK----PTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDD 278 (558)
Q Consensus 203 ~g~~~~A~~~~~~m~~~~~~----p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 278 (558)
.|+.+.|..+++.=...+.. .+..-+...+.-+.+.|+.+....++-++...- +.. .......+.-.
T Consensus 520 ~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~~---~~s------~l~~~l~~~p~ 590 (829)
T KOG2280|consen 520 EGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNKL---NRS------SLFMTLRNQPL 590 (829)
T ss_pred cCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHHH---HHH------HHHHHHHhchh
Confidence 77777777766542221100 011123333444455555555555544443321 000 00111122233
Q ss_pred HHHHHhccCCC-CHHhHHHHHHHHHHCCChHHHHHHHH--HHH----HCCCCCCHHHHHHHHHHHHccCC----------
Q 036003 279 AVSVFDNMSGK-DTQAWSAMIVAYATHGQGHKSILMFE--EMM----KAQVSPDEITFLGLLYACSHTGL---------- 341 (558)
Q Consensus 279 A~~~~~~~~~~-~~~~~~~li~~~~~~~~~~~a~~~~~--~m~----~~g~~p~~~~~~~ll~~~~~~g~---------- 341 (558)
|..+|....+. |..+ +..+.+.++-.++..-|. ... ..|..|+. .....+|.+...
T Consensus 591 a~~lY~~~~r~~~~~~----l~d~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~l---k~~a~~~a~sk~~s~e~ka~ed 663 (829)
T KOG2280|consen 591 ALSLYRQFMRHQDRAT----LYDFYNQDDNHQALASFHLQASYAAETIEGRIPAL---KTAANAFAKSKEKSFEAKALED 663 (829)
T ss_pred hhHHHHHHHHhhchhh----hhhhhhcccchhhhhhhhhhhhhhhhhhcccchhH---HHHHHHHhhhhhhhhHHHHHHH
Confidence 33333332221 1110 111122222222222221 100 11233333 233334443332
Q ss_pred hHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036003 342 VDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIF 421 (558)
Q Consensus 342 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 421 (558)
...-+++.+.+..+++..-.--+.+--+.-+...|+..+|.++-.+.+ -||-..|--=+.++...+++++-+++-+...
T Consensus 664 ~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-ipdKr~~wLk~~aLa~~~kweeLekfAkskk 742 (829)
T KOG2280|consen 664 QMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-IPDKRLWWLKLTALADIKKWEELEKFAKSKK 742 (829)
T ss_pred HHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-CcchhhHHHHHHHHHhhhhHHHHHHHHhccC
Confidence 222334445555555554444556666777888899999999999997 4687788778889999999988776654332
Q ss_pred ccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHH
Q 036003 422 ELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMK 455 (558)
Q Consensus 422 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 455 (558)
+|.-|.-...+|.+.|+.+||.+++-+..
T Consensus 743 -----sPIGy~PFVe~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 743 -----SPIGYLPFVEACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred -----CCCCchhHHHHHHhcccHHHHhhhhhccC
Confidence 25778999999999999999999987654
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=96.20 E-value=0.73 Score=44.26 Aligned_cols=73 Identities=16% Similarity=0.124 Sum_probs=50.4
Q ss_pred HHHHHHHHhCCChHHHHHHHhccCCC-C------cchHHHHHHHHHH---CCCccHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036003 163 TTLINLYAECSDVEAARRIFENISEP-C------VVSYNAIITAYAR---SSRPNEALSLFRELQERNLKPTDVTMLSAL 232 (558)
Q Consensus 163 ~~ll~~~~~~g~~~~A~~~~~~~~~~-~------~~~~~~li~~~~~---~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 232 (558)
..++-.|....+++...++++.+... + ...-.....++.+ .|+.++|++++..+....-.+++.+|..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 34555688888899999999888762 1 1112234445566 788889999988866555677888887777
Q ss_pred HHH
Q 036003 233 SSC 235 (558)
Q Consensus 233 ~~~ 235 (558)
..|
T Consensus 225 RIy 227 (374)
T PF13281_consen 225 RIY 227 (374)
T ss_pred HHH
Confidence 665
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.11 E-value=0.076 Score=50.32 Aligned_cols=138 Identities=9% Similarity=-0.021 Sum_probs=98.1
Q ss_pred HHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcC
Q 036003 297 MIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAG 376 (558)
Q Consensus 297 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 376 (558)
-...|.+.|++..|...|++.... -. +.+.-+.++... ...+ -..++..|.-+|.+.+
T Consensus 214 ~Gn~~fK~gk~~~A~~~Yerav~~--l~-----------~~~~~~~ee~~~-~~~~--------k~~~~lNlA~c~lKl~ 271 (397)
T KOG0543|consen 214 RGNVLFKEGKFKLAKKRYERAVSF--LE-----------YRRSFDEEEQKK-AEAL--------KLACHLNLAACYLKLK 271 (397)
T ss_pred hhhHHHhhchHHHHHHHHHHHHHH--hh-----------ccccCCHHHHHH-HHHH--------HHHHhhHHHHHHHhhh
Confidence 355677777777777777776541 00 011111122211 1111 2236778888999999
Q ss_pred CHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHH-HHHHHH
Q 036003 377 RLDEAYRFIDEL-P-IKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDV-DYLRKL 453 (558)
Q Consensus 377 ~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A-~~~~~~ 453 (558)
++.+|++..+.. . .++|+-....=..++...|+++.|...|++++++.|.|-.+-.-|+.+-.+..++.+. .++|..
T Consensus 272 ~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~k~~~~~~kekk~y~~ 351 (397)
T KOG0543|consen 272 EYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQKIREYEEKEKKMYAN 351 (397)
T ss_pred hHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998886 2 2457777777789999999999999999999999999988888888887777776654 788888
Q ss_pred HHh
Q 036003 454 MKD 456 (558)
Q Consensus 454 m~~ 456 (558)
|-.
T Consensus 352 mF~ 354 (397)
T KOG0543|consen 352 MFA 354 (397)
T ss_pred Hhh
Confidence 854
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=96.07 E-value=1.9 Score=43.58 Aligned_cols=162 Identities=16% Similarity=0.049 Sum_probs=107.1
Q ss_pred cHHHHHHHHhcCCCchHHHHHHHHhHHC-CCCCC-----cccHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCCChHH
Q 036003 89 LFNTMARGYSRSKTPIRAIFLFVELLNS-GLLPD-----DYSFPSLLKACACV--GAEALEEGKQLHCFAIKLGLNSNLY 160 (558)
Q Consensus 89 ~~~~li~~~~~~g~~~~A~~~~~~m~~~-g~~p~-----~~~~~~ll~~~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~ 160 (558)
....+++...-.||-+.+++++.+..+. |+.-. .-.|..++..++.. .....+.+.++++.+.+. -|+..
T Consensus 190 ~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~--yP~s~ 267 (468)
T PF10300_consen 190 KVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR--YPNSA 267 (468)
T ss_pred HHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh--CCCcH
Confidence 4555677777889999999988877553 23211 12444445444443 337888899999998876 35554
Q ss_pred HHHH-HHHHHHhCCChHHHHHHHhccCC-------CCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036003 161 VCTT-LINLYAECSDVEAARRIFENISE-------PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSAL 232 (558)
Q Consensus 161 ~~~~-ll~~~~~~g~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll 232 (558)
.|.. -.+.+...|++++|.+.|++... -....+--+.-.+.-..+|++|.+.|..+.+.. ..+..+|..+.
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s-~WSka~Y~Y~~ 346 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKES-KWSKAFYAYLA 346 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcc-ccHHHHHHHHH
Confidence 4433 33567778999999999987553 222344556667778889999999999998764 34555666555
Q ss_pred HHH-hccCCh-------HHHHHHHHHHHH
Q 036003 233 SSC-ALLGSL-------DLGKWIHEYIKK 253 (558)
Q Consensus 233 ~~~-~~~~~~-------~~a~~~~~~~~~ 253 (558)
.+| ...++. ++|..++.++..
T Consensus 347 a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 347 AACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 444 355666 777777777653
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=96.02 E-value=0.046 Score=53.00 Aligned_cols=64 Identities=9% Similarity=0.026 Sum_probs=47.5
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHccC
Q 036003 361 GIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKSTP----ILWRTLLSSCSSHNNLGLAKQVIERIFELD 424 (558)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 424 (558)
+...++.+..+|.+.|++++|+..|++. ...|+. .+|..+..+|...|+.++|+..++++++..
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALels 142 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRDY 142 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhc
Confidence 4567777777888888888888888774 555653 347778888888888888888888887763
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.21 Score=40.41 Aligned_cols=61 Identities=16% Similarity=0.189 Sum_probs=43.3
Q ss_pred HHHhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCccc
Q 036003 370 DLLGRAGRLDEAYRFIDEL----PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGD 430 (558)
Q Consensus 370 ~~~~~~g~~~~A~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 430 (558)
....+.|++++|.+.|+.+ +..+ ....--.++.+|.+.+++++|...+++.+++.|.++.+
T Consensus 18 ~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~v 83 (142)
T PF13512_consen 18 QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNV 83 (142)
T ss_pred HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCc
Confidence 3345677888888888777 2222 23455567788888888888888888888888877653
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=95.92 E-value=0.04 Score=49.22 Aligned_cols=117 Identities=11% Similarity=0.053 Sum_probs=83.2
Q ss_pred CCHHHHHHHHccCC--CCCcccHHHHHHHHhcC-----CCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcC------
Q 036003 70 SSMEHAHLLFDRIP--EPDIVLFNTMARGYSRS-----KTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG------ 136 (558)
Q Consensus 70 ~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~------ 136 (558)
..+-..+..|...+ .+|-.+|-..+..+... +.++=....++.|.+.|+.-|..+|+.||+.+=+..
T Consensus 48 K~Lv~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nv 127 (406)
T KOG3941|consen 48 KSLVHVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNV 127 (406)
T ss_pred ccccchhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHH
Confidence 34445566777766 57888888888877643 445556667888999999999999999998764432
Q ss_pred --------cccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCh-HHHHHHHhccC
Q 036003 137 --------AEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDV-EAARRIFENIS 186 (558)
Q Consensus 137 --------~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~-~~A~~~~~~~~ 186 (558)
..+-+-+..++++|...|+-||..+-..|++++.+.+-. .+..++.-.|+
T Consensus 128 fQ~~F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmP 186 (406)
T KOG3941|consen 128 FQKVFLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMP 186 (406)
T ss_pred HHHHHhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhh
Confidence 134456788888888888888888888888888776653 33344443343
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.66 Score=36.67 Aligned_cols=140 Identities=9% Similarity=0.082 Sum_probs=81.6
Q ss_pred HHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHH
Q 036003 302 ATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381 (558)
Q Consensus 302 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 381 (558)
.-.|..++..++..+.... .+..-++.+|--....-+-+-..+.++.+-+-+.+.+- .....++.+|.+.|
T Consensus 13 ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~C-~NlKrVi~C~~~~n----- 83 (161)
T PF09205_consen 13 ILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISKC-GNLKRVIECYAKRN----- 83 (161)
T ss_dssp HHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG--S-THHHHHHHHHTT-----
T ss_pred HHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchhh-cchHHHHHHHHHhc-----
Confidence 3456777777777777653 24555666665555555556666666666543222221 11123344444433
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 036003 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVL 460 (558)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 460 (558)
.+.......+......|+-+.-.+++..+.+.+..++....-+..+|.+.|+..++.+++++.-+.|++
T Consensus 84 ----------~~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 84 ----------KLSEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp -------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred ----------chHHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 233445566777888888888888888888766777788888999999999999999999988888874
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=95.84 E-value=2.3 Score=46.35 Aligned_cols=81 Identities=15% Similarity=0.037 Sum_probs=38.0
Q ss_pred HHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHH
Q 036003 333 LYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGL 412 (558)
Q Consensus 333 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 412 (558)
+.+|...|++.+|..+..++.. +-.--..+-..|+.-+...++.-+|-++..+....|.. .+..+++...+++
T Consensus 972 l~a~~~~~dWr~~l~~a~ql~~--~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~~~-----av~ll~ka~~~~e 1044 (1265)
T KOG1920|consen 972 LKAYKECGDWREALSLAAQLSE--GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDPEE-----AVALLCKAKEWEE 1044 (1265)
T ss_pred HHHHHHhccHHHHHHHHHhhcC--CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCHHH-----HHHHHhhHhHHHH
Confidence 4445555555555555444432 11111122245555566666666666666655322221 2233444445666
Q ss_pred HHHHHHHH
Q 036003 413 AKQVIERI 420 (558)
Q Consensus 413 a~~~~~~~ 420 (558)
|.++....
T Consensus 1045 Alrva~~~ 1052 (1265)
T KOG1920|consen 1045 ALRVASKA 1052 (1265)
T ss_pred HHHHHHhc
Confidence 65555444
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.73 E-value=0.96 Score=41.32 Aligned_cols=147 Identities=12% Similarity=0.023 Sum_probs=87.6
Q ss_pred HHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCH
Q 036003 299 VAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRL 378 (558)
Q Consensus 299 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 378 (558)
......|++.+|..+|.......-. +...-..+..+|...|+.+.|..++..+-.. --........+-|..+.+....
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhcC
Confidence 3455667777777777777664222 2344556677777888888888887776542 1111112222334455555555
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccC--CCCcccHHhHHHHHHhcCChHHH
Q 036003 379 DEAYRFIDELPIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELD--DSHGGDYVILSNLCARAGRWEDV 447 (558)
Q Consensus 379 ~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A 447 (558)
.+...+-.+....| |...-..+...+...|+.++|.+.+-.++..+ -.+...-..|+..+.-.|.-+.+
T Consensus 220 ~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~ 291 (304)
T COG3118 220 PEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPL 291 (304)
T ss_pred CCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHH
Confidence 55555555553345 55555667777777888888877777776654 34445666677777666654443
|
|
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.70 E-value=1.3 Score=39.80 Aligned_cols=166 Identities=14% Similarity=0.178 Sum_probs=91.0
Q ss_pred HHhcCCHHHHHHHHhccCCC------CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHc---c
Q 036003 270 HAKCGRLDDAVSVFDNMSGK------DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ-VSPDEITFLGLLYACSH---T 339 (558)
Q Consensus 270 ~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~ll~~~~~---~ 339 (558)
-.+.|++++|.+.|+.+... ...+--.++-++.+.++++.|+..+++....- -.||. -|..-|.+++. .
T Consensus 44 ~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~-dY~~YlkgLs~~~~i 122 (254)
T COG4105 44 ELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNA-DYAYYLKGLSYFFQI 122 (254)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCCh-hHHHHHHHHHHhccC
Confidence 34557777777777776643 22334455666677777777777777766632 23332 23333333331 1
Q ss_pred ----CCh---HHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHH--HHHHHHHHHHhcCCH
Q 036003 340 ----GLV---DEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPI--LWRTLLSSCSSHNNL 410 (558)
Q Consensus 340 ----g~~---~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~--~~~~l~~~~~~~g~~ 410 (558)
.+. ..|..-|+.+..++ || ..-..+|..-+..+. |.. .=..+.+-|.+.|.+
T Consensus 123 ~~~~rDq~~~~~A~~~f~~~i~ry---Pn-------------S~Ya~dA~~~i~~~~---d~LA~~Em~IaryY~kr~~~ 183 (254)
T COG4105 123 DDVTRDQSAARAAFAAFKELVQRY---PN-------------SRYAPDAKARIVKLN---DALAGHEMAIARYYLKRGAY 183 (254)
T ss_pred CccccCHHHHHHHHHHHHHHHHHC---CC-------------CcchhhHHHHHHHHH---HHHHHHHHHHHHHHHHhcCh
Confidence 111 12222333333221 11 111111111111110 000 112356678899999
Q ss_pred HHHHHHHHHHHccCCCCcc---cHHhHHHHHHhcCChHHHHHHHHHHH
Q 036003 411 GLAKQVIERIFELDDSHGG---DYVILSNLCARAGRWEDVDYLRKLMK 455 (558)
Q Consensus 411 ~~a~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~A~~~~~~m~ 455 (558)
-.|..-++++++.-|.... .+..+..+|...|..++|.+.-+-+.
T Consensus 184 ~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 184 VAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 9999999999988666544 46667788999999999988765554
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.69 E-value=0.32 Score=40.37 Aligned_cols=71 Identities=18% Similarity=0.247 Sum_probs=45.9
Q ss_pred hHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchh----hcCCCCChhH
Q 036003 293 AWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRD----KYGIVPGIKH 364 (558)
Q Consensus 293 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~ 364 (558)
+...++..+...|++++|..+.+.+.... +.+...+..+|.++...|+...|.++|+.+.. ..|+.|+..+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~d-P~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALD-PYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHS-TT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 34556667777888888888888887742 23567888888888888888888888876653 2367776654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.64 E-value=0.62 Score=47.11 Aligned_cols=160 Identities=12% Similarity=0.067 Sum_probs=104.8
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHCC-CCCCH-----HHHHHHHHHHHc----cCChHHHHHHHHHchhhcCCCCChh
Q 036003 294 WSAMIVAYATHGQGHKSILMFEEMMKAQ-VSPDE-----ITFLGLLYACSH----TGLVDEGWNYFYSMRDKYGIVPGIK 363 (558)
Q Consensus 294 ~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~-----~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~ 363 (558)
...++....-.|+-+.+++.+.+..+.+ +.-.. ..|...+..++. ....+.|.+++..+.++ -|+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcH
Confidence 3444555555666677777666655432 22111 123333333332 45678899999999864 35555
Q ss_pred HHH-HHHHHHhhcCCHHHHHHHHHhCCC-C-----CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhH-H
Q 036003 364 HYG-CMVDLLGRAGRLDEAYRFIDELPI-K-----STPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVIL-S 435 (558)
Q Consensus 364 ~~~-~li~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l-~ 435 (558)
.|. .-.+.+...|++++|++.|++.-. + -....+--+...+....++++|.+.|.++.+....+...|..+ +
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 544 334667788999999999997521 1 1224455567778889999999999999999887766666554 4
Q ss_pred HHHHhcCCh-------HHHHHHHHHHHh
Q 036003 436 NLCARAGRW-------EDVDYLRKLMKD 456 (558)
Q Consensus 436 ~~~~~~g~~-------~~A~~~~~~m~~ 456 (558)
.+|...|+. ++|.++|++...
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 456677888 888888887754
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=95.58 E-value=0.2 Score=48.89 Aligned_cols=200 Identities=14% Similarity=0.076 Sum_probs=101.0
Q ss_pred HHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCC
Q 036003 298 IVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGR 377 (558)
Q Consensus 298 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 377 (558)
+.---+..+...-+++-++..+ +.||-.+.-+++ +--....+.++.++|++..+. + ...+..-- .....|.
T Consensus 175 Mq~AWRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA-g----E~~lg~s~-~~~~~g~ 245 (539)
T PF04184_consen 175 MQKAWRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA-G----EASLGKSQ-FLQHHGH 245 (539)
T ss_pred HHHHHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH-H----HHhhchhh-hhhcccc
Confidence 3333445555566666666655 455543332332 222345577788888777653 1 00100000 0001111
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC--CcccHHhHHHHHHhcCChHHHHHHHHHHH
Q 036003 378 LDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS--HGGDYVILSNLCARAGRWEDVDYLRKLMK 455 (558)
Q Consensus 378 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 455 (558)
..+.+..-..++-..+=..+..++.+.|+.++|.+.++++++..|. +......|+.++...+.+.++..++.+..
T Consensus 246 ---~~e~~~~Rdt~~~~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYd 322 (539)
T PF04184_consen 246 ---FWEAWHRRDTNVLVYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYD 322 (539)
T ss_pred ---hhhhhhccccchhhhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhc
Confidence 1111111111222333345677777888888888888888876654 34567788888888888888888888876
Q ss_pred hCCCccCCcccEEE--EC--CEEEEEeeCC-CCCCChHHHHHHHHHHHHHHHHcCcccC
Q 036003 456 DRGVLKVPGCSSIE--VN--NVVREFFSGD-GVHSYSTDLQKALDELVKELKMVGYVPD 509 (558)
Q Consensus 456 ~~g~~~~~~~~~~~--~~--~~~~~~~~~~-~~~~~~~~~~~~~~~l~~~m~~~g~~pd 509 (558)
+....++..+.+.. +. .....+.... ...|.......+++-+-+.++-+..+|+
T Consensus 323 Di~lpkSAti~YTaALLkaRav~d~fs~e~a~rRGls~ae~~aveAi~RAvefNPHVp~ 381 (539)
T PF04184_consen 323 DISLPKSATICYTAALLKARAVGDKFSPEAASRRGLSPAEMNAVEAIHRAVEFNPHVPK 381 (539)
T ss_pred cccCCchHHHHHHHHHHHHHhhccccCchhhhhcCCChhHHHHHHHHHHHHHhCCCCch
Confidence 55444443332211 00 0001111110 1222222333445555666777788876
|
The molecular function of this protein is uncertain. |
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.53 E-value=0.14 Score=40.22 Aligned_cols=91 Identities=14% Similarity=0.091 Sum_probs=68.7
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCc----ccHHhHHHHHHhcCC
Q 036003 370 DLLGRAGRLDEAYRFIDEL-PIK-STPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHG----GDYVILSNLCARAGR 443 (558)
Q Consensus 370 ~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~ 443 (558)
-++...|+++.|++.|.+. ..- .....||.-..++.-+|+.++|+.-+++++++.-+.. ..|..-+..|...|+
T Consensus 51 valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 51 IALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3567788888888888876 222 3667888888888889999999999998888753322 246666777888889
Q ss_pred hHHHHHHHHHHHhCCCc
Q 036003 444 WEDVDYLRKLMKDRGVL 460 (558)
Q Consensus 444 ~~~A~~~~~~m~~~g~~ 460 (558)
-+.|..-|+...+.|-+
T Consensus 131 dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGSK 147 (175)
T ss_pred hHHHHHhHHHHHHhCCH
Confidence 88898888888776653
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.51 E-value=0.18 Score=40.37 Aligned_cols=47 Identities=26% Similarity=0.438 Sum_probs=26.6
Q ss_pred CCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHH
Q 036003 357 GIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL----PIKSTPILWRTLLSS 403 (558)
Q Consensus 357 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~l~~~ 403 (558)
...|+..+..+++.+|+..|++..|.++++.. +++-+..+|..|+.-
T Consensus 47 pl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 47 PLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 44456666666666666666666666665554 333345555555543
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.51 E-value=1.7 Score=38.76 Aligned_cols=194 Identities=16% Similarity=0.146 Sum_probs=105.5
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhccCC-----CCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-
Q 036003 261 KVNTALIDMHAKCGRLDDAVSVFDNMSG-----KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLY- 334 (558)
Q Consensus 261 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~- 334 (558)
..+......+...+++..+...+..... .....+......+...+.+..+...+.........+. ........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHH
Confidence 3444455555555666555555554431 2334445555555555666666666666655332221 11111222
Q ss_pred HHHccCChHHHHHHHHHchhhcCC--CCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC--HHHHHHHHHHHHhcCC
Q 036003 335 ACSHTGLVDEGWNYFYSMRDKYGI--VPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKST--PILWRTLLSSCSSHNN 409 (558)
Q Consensus 335 ~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~--~~~~~~l~~~~~~~g~ 409 (558)
.+...|+++.+...+.+.... .. ......+......+...++.+.|...+.+. ...++ ...+..+...+...++
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (291)
T COG0457 139 ALYELGDYEEALELYEKALEL-DPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGK 217 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHhc-CCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHccc
Confidence 556666777777666666321 11 112233333334455666777777776665 22222 4556666666677777
Q ss_pred HHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 410 LGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 410 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
++.+...+.......|.....+..+...+...|.++++...+++...
T Consensus 218 ~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 218 YEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred HHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 77777777777777666444455555555555667777766666654
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.1 Score=46.87 Aligned_cols=92 Identities=15% Similarity=0.119 Sum_probs=54.2
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC---cccHHhHH
Q 036003 364 HYGCMVDLLGRAGRLDEAYRFIDEL-PIKST----PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH---GGDYVILS 435 (558)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~ 435 (558)
.|+.-+.. .+.|++..|...|... ..-|+ +..+.-|..++...|++++|...|..+.+..|.+ +..+.-|+
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 34444433 3445566666666654 11111 1233336667777777777777777776655444 34566667
Q ss_pred HHHHhcCChHHHHHHHHHHHh
Q 036003 436 NLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 436 ~~~~~~g~~~~A~~~~~~m~~ 456 (558)
.+..+.|+.++|..+|+++.+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k 243 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIK 243 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHH
Confidence 777777777777777777665
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=95.31 E-value=0.96 Score=45.09 Aligned_cols=159 Identities=16% Similarity=0.138 Sum_probs=94.9
Q ss_pred HHHHHCCCccHHHHHHH--HHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 036003 198 TAYARSSRPNEALSLFR--ELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGR 275 (558)
Q Consensus 198 ~~~~~~g~~~~A~~~~~--~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 275 (558)
....-.++++++.+... ++.. .+ +......++..+.+.|..+.|.++...-. .-.....+.|+
T Consensus 269 k~av~~~d~~~v~~~i~~~~ll~-~i--~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~ 333 (443)
T PF04053_consen 269 KTAVLRGDFEEVLRMIAASNLLP-NI--PKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGN 333 (443)
T ss_dssp HHHHHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-
T ss_pred HHHHHcCChhhhhhhhhhhhhcc-cC--ChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCC
Confidence 33455677777666664 2221 12 24456677777777888888777643321 23455678888
Q ss_pred HHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhh
Q 036003 276 LDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDK 355 (558)
Q Consensus 276 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 355 (558)
++.|.++.+... +...|..|.....+.|+++-|.+.|++..+ |..|+-.|...|+.+.-.++.+....+
T Consensus 334 L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~ 402 (443)
T PF04053_consen 334 LDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEER 402 (443)
T ss_dssp HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHc
Confidence 888888877665 566888888888888888888888887543 556666677778776666666555442
Q ss_pred cCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 036003 356 YGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELP 389 (558)
Q Consensus 356 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 389 (558)
| -++....++.-.|+.++..+++.+-+
T Consensus 403 -~------~~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 403 -G------DINIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp -T-------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred -c------CHHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 2 24445555556677777777776654
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=95.20 E-value=0.5 Score=45.45 Aligned_cols=128 Identities=23% Similarity=0.273 Sum_probs=69.0
Q ss_pred ccHHHHHHHHHhcCcccHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCChHHHHHHHhccCC--CCcchH-HHHHH
Q 036003 123 YSFPSLLKACACVGAEALEEGKQLHCFAIKLG-LNSNLYVCTTLINLYAECSDVEAARRIFENISE--PCVVSY-NAIIT 198 (558)
Q Consensus 123 ~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g-~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~~~~~-~~li~ 198 (558)
..|...|+...+. .-++.|..+|-++.+.| +.++..++++++..++ .|+...|..+|+.-.. +|...| +..+.
T Consensus 398 ~v~C~~~N~v~r~--~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~ 474 (660)
T COG5107 398 FVFCVHLNYVLRK--RGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLL 474 (660)
T ss_pred hHHHHHHHHHHHH--hhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHH
Confidence 4455555555555 55666666666666655 4555666666665544 3555556666654332 444433 33444
Q ss_pred HHHHCCCccHHHHHHHHHHHCCCCCC--HHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 036003 199 AYARSSRPNEALSLFRELQERNLKPT--DVTMLSALSSCALLGSLDLGKWIHEYIKKY 254 (558)
Q Consensus 199 ~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 254 (558)
.+..-++-+.|..+|+..... +..+ ...|..+|.--...|++..+..+-+++...
T Consensus 475 fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~ 531 (660)
T COG5107 475 FLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFREL 531 (660)
T ss_pred HHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHH
Confidence 455556666666666643322 1222 345666666666666666666655555543
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.01 E-value=2.4 Score=37.69 Aligned_cols=197 Identities=14% Similarity=0.108 Sum_probs=119.3
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHh-CCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC---CHHhHHHHHH-H
Q 036003 226 VTMLSALSSCALLGSLDLGKWIHEYIKKY-GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK---DTQAWSAMIV-A 300 (558)
Q Consensus 226 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~-~ 300 (558)
..+......+...+++..+...+...... ........+..+...+...+++..+.+.+...... +......... .
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 139 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLAEALLALGA 139 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchHHHHHHHHH
Confidence 33344444444445555544444444331 22233334444445555555556666655555431 1122222223 6
Q ss_pred HHHCCChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCC-ChhHHHHHHHHHhhc
Q 036003 301 YATHGQGHKSILMFEEMMKAQVSP----DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVP-GIKHYGCMVDLLGRA 375 (558)
Q Consensus 301 ~~~~~~~~~a~~~~~~m~~~g~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~ 375 (558)
+...|+++.|...+.+... ..| ....+......+...++.+.+...+..... .... ....+..+...+...
T Consensus 140 ~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 140 LYELGDYEEALELYEKALE--LDPELNELAEALLALGALLEALGRYEEALELLEKALK--LNPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHcCCHHHHHHHHHHHHh--cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHh--hCcccchHHHHHhhHHHHHc
Confidence 7778888888888888755 233 233444444446677888888888888875 3333 467777888888888
Q ss_pred CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 036003 376 GRLDEAYRFIDEL-PIKST-PILWRTLLSSCSSHNNLGLAKQVIERIFELDDS 426 (558)
Q Consensus 376 g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 426 (558)
++++.|...+... ...|+ ...+..+...+...+..+.+...+.+.....|.
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 268 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALELDPD 268 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHHhCcc
Confidence 8899998888877 33444 445555555555777899999999999888876
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.99 E-value=3.5 Score=45.01 Aligned_cols=111 Identities=16% Similarity=0.141 Sum_probs=72.9
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHH--HHHHHHHHHHcc
Q 036003 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEI--TFLGLLYACSHT 339 (558)
Q Consensus 262 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~ 339 (558)
.|.+..+-+...+.+++|.-.|+..-+ ..--+.+|...|++.+|+.+..++... -+.. +-..|..-+...
T Consensus 941 i~~~ya~hL~~~~~~~~Aal~Ye~~Gk-----lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~~~a~~L~s~L~e~ 1012 (1265)
T KOG1920|consen 941 IYEAYADHLREELMSDEAALMYERCGK-----LEKALKAYKECGDWREALSLAAQLSEG---KDELVILAEELVSRLVEQ 1012 (1265)
T ss_pred HHHHHHHHHHHhccccHHHHHHHHhcc-----HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHHHHHHHHHHHHHHc
Confidence 334444445556777777666665432 233566777788888888887776431 1221 224677778888
Q ss_pred CChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 036003 340 GLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELP 389 (558)
Q Consensus 340 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 389 (558)
+++-+|-++..+...+ ....+..|++...+++|..+....+
T Consensus 1013 ~kh~eAa~il~e~~sd---------~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1013 RKHYEAAKILLEYLSD---------PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred ccchhHHHHHHHHhcC---------HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 9999998888877652 2345667888888999998887764
|
|
| >PRK11619 lytic murein transglycosylase; Provisional | Back alignment and domain information |
|---|
Probab=94.85 E-value=6.3 Score=41.63 Aligned_cols=115 Identities=11% Similarity=0.094 Sum_probs=58.7
Q ss_pred CCChHHHHHHHHHHHHCC-CCCCH--HHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHH
Q 036003 304 HGQGHKSILMFEEMMKAQ-VSPDE--ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDE 380 (558)
Q Consensus 304 ~~~~~~a~~~~~~m~~~g-~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 380 (558)
..+.+.|..++....... ..+.. .....+.......+..+++...+...... ..+......-+..-.+.++++.
T Consensus 254 r~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~ 330 (644)
T PRK11619 254 RQDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRG 330 (644)
T ss_pred HhCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHH
Confidence 345577777777664432 22222 22333332223322245555555554321 1233444444555557777777
Q ss_pred HHHHHHhCCC--CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036003 381 AYRFIDELPI--KSTPILWRTLLSSCSSHNNLGLAKQVIERIF 421 (558)
Q Consensus 381 A~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 421 (558)
+...+..|+. .-...-..=+..++...|+.++|...|+++.
T Consensus 331 ~~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~a 373 (644)
T PRK11619 331 LNTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQLM 373 (644)
T ss_pred HHHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 7777777731 1122222234555566777777777777764
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=94.82 E-value=5.1 Score=40.46 Aligned_cols=382 Identities=14% Similarity=0.100 Sum_probs=226.2
Q ss_pred ChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCC--CCcc-cHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHH
Q 036003 52 DLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE--PDIV-LFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSL 128 (558)
Q Consensus 52 ~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~--~~~~-~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~l 128 (558)
+...++.||.--... ...+.+..+++.+.. |-.. -|......=.+.|..+.+..+|++-.. |+..+...|...
T Consensus 44 ~f~~wt~li~~~~~~---~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y 119 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSI---EDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSY 119 (577)
T ss_pred cccchHHHHhccCch---hHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHH
Confidence 344555556544444 566777777777664 4333 355555556677888999999998876 466677777777
Q ss_pred HHHHHhcCcccHHHHHHHHHHHHHh-CCC-ChHHHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHH---C
Q 036003 129 LKACACVGAEALEEGKQLHCFAIKL-GLN-SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYAR---S 203 (558)
Q Consensus 129 l~~~~~~~~~~~~~a~~~~~~~~~~-g~~-~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~---~ 203 (558)
+.-+.... |+.+.....|+.+... |.. -+...|...|.--..++++.....+++++.+-....|+..-.-|.+ .
T Consensus 120 ~~f~~n~~-~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRileiP~~~~~~~f~~f~~~l~~ 198 (577)
T KOG1258|consen 120 LAFLKNNN-GDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEIPLHQLNRHFDRFKQLLNQ 198 (577)
T ss_pred HHHHhccC-CCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhhhhhHhHHHHHHHHHHHhc
Confidence 77666543 8888888888888764 322 2445677777777888899999999999887444444444443332 2
Q ss_pred ------CCccHHHHHHHHHHHC----CCCCCHHHHHHHHHHHh-ccCChHH------------------------HHHHH
Q 036003 204 ------SRPNEALSLFRELQER----NLKPTDVTMLSALSSCA-LLGSLDL------------------------GKWIH 248 (558)
Q Consensus 204 ------g~~~~A~~~~~~m~~~----~~~p~~~~~~~ll~~~~-~~~~~~~------------------------a~~~~ 248 (558)
...+++.++-...... -..+.......-+.--. ..+..+. ....+
T Consensus 199 ~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~f 278 (577)
T KOG1258|consen 199 NEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWGF 278 (577)
T ss_pred CChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHhh
Confidence 2234444443333211 00011111111111110 0111111 11222
Q ss_pred HHHHHhC-------CCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC---CHHhHHHHHHHHHHCCChHHHHHHHHHHH
Q 036003 249 EYIKKYG-------LDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK---DTQAWSAMIVAYATHGQGHKSILMFEEMM 318 (558)
Q Consensus 249 ~~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 318 (558)
+.-.+.- .+++..+|...+..-.+.|+.+.+.-+|++..-+ =...|-..+.-.-..|+.+-|..++....
T Consensus 279 E~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~ 358 (577)
T KOG1258|consen 279 EEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARAC 358 (577)
T ss_pred hhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhh
Confidence 2221110 1234567777777778888888888888887654 22334444444444588888887777665
Q ss_pred HCCCC--CCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHhhcCCHHHHH---HHHHhC-CCC
Q 036003 319 KAQVS--PDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPG-IKHYGCMVDLLGRAGRLDEAY---RFIDEL-PIK 391 (558)
Q Consensus 319 ~~g~~--p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~---~~~~~~-~~~ 391 (558)
+--.+ |....+.+.+ +-..|+++.|..+++.+.+. . |+ ...-..-+....+.|..+.+. .++... +..
T Consensus 359 ~i~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~ 433 (577)
T KOG1258|consen 359 KIHVKKTPIIHLLEARF--EESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGK 433 (577)
T ss_pred hhcCCCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccc
Confidence 54322 2333333332 34568999999999999874 3 44 333334456667888888887 444443 212
Q ss_pred CCHHHHHHHHH-----HHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCC
Q 036003 392 STPILWRTLLS-----SCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGR 443 (558)
Q Consensus 392 ~~~~~~~~l~~-----~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 443 (558)
-+..+...+.- .+.-.++.+.|..++.++.+..|++-..|..+++.....+.
T Consensus 434 ~~~~i~~~l~~~~~r~~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~~ 490 (577)
T KOG1258|consen 434 ENNGILEKLYVKFARLRYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQPS 490 (577)
T ss_pred cCcchhHHHHHHHHHHHHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCCc
Confidence 22222222222 23446899999999999999999998889988888766653
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.78 E-value=1.1 Score=36.40 Aligned_cols=19 Identities=11% Similarity=-0.041 Sum_probs=13.4
Q ss_pred HHHHHHHHHHHHccCCCCc
Q 036003 410 LGLAKQVIERIFELDDSHG 428 (558)
Q Consensus 410 ~~~a~~~~~~~~~~~~~~~ 428 (558)
...|..-|+++++.-|++.
T Consensus 115 ~~~A~~~f~~lv~~yP~S~ 133 (142)
T PF13512_consen 115 ARQAFRDFEQLVRRYPNSE 133 (142)
T ss_pred HHHHHHHHHHHHHHCcCCh
Confidence 5567777777777777754
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=94.77 E-value=0.37 Score=44.95 Aligned_cols=46 Identities=13% Similarity=0.137 Sum_probs=22.4
Q ss_pred HHCCCccHHHHHHHHHHHC--CCCCCHHHHHHHHHHHhccCChHHHHH
Q 036003 201 ARSSRPNEALSLFRELQER--NLKPTDVTMLSALSSCALLGSLDLGKW 246 (558)
Q Consensus 201 ~~~g~~~~A~~~~~~m~~~--~~~p~~~~~~~ll~~~~~~~~~~~a~~ 246 (558)
..+.+.++|+..+.+-... +..---.+|..+..+.++.|.++++..
T Consensus 17 y~s~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~ 64 (518)
T KOG1941|consen 17 YQSNQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLK 64 (518)
T ss_pred hcCchHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHH
Confidence 3455666666666555432 001112244455555555555555543
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.74 E-value=0.27 Score=44.22 Aligned_cols=100 Identities=9% Similarity=0.059 Sum_probs=75.5
Q ss_pred HHHHHHhccC--CCCcchHHHHHHHHHHC-----CCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC----------
Q 036003 177 AARRIFENIS--EPCVVSYNAIITAYARS-----SRPNEALSLFRELQERNLKPTDVTMLSALSSCALLG---------- 239 (558)
Q Consensus 177 ~A~~~~~~~~--~~~~~~~~~li~~~~~~-----g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~---------- 239 (558)
..+..|.... ++|-.+|-+.+..+... +..+-....++.|.+-|+.-|..+|..|++.+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 3455666666 47777787777776543 556666777888999999999999999998875543
Q ss_pred ------ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 036003 240 ------SLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRL 276 (558)
Q Consensus 240 ------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 276 (558)
+-+=+..++++|..+|+.||..+-..|++++.+.|..
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 2234678899999999999999888899998877653
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.73 E-value=1.4 Score=34.90 Aligned_cols=62 Identities=10% Similarity=0.153 Sum_probs=39.9
Q ss_pred HHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCC
Q 036003 194 NAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL 256 (558)
Q Consensus 194 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 256 (558)
..-+.....+|+-+.-.+++.++.+. -.+++.....+..+|.+.|+..++..++.++.+.|+
T Consensus 90 D~ALd~lv~~~kkDqLdki~~~l~kn-~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~ 151 (161)
T PF09205_consen 90 DLALDILVKQGKKDQLDKIYNELKKN-EEINPEFLVKIANAYKKLGNTREANELLKEACEKGL 151 (161)
T ss_dssp HHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHHHHHhccHHHHHHHHHHHhhc-cCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhch
Confidence 34556677777777777777777653 367777777788888888888888887777777764
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.66 E-value=0.098 Score=30.43 Aligned_cols=33 Identities=24% Similarity=0.275 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC
Q 036003 395 ILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH 427 (558)
Q Consensus 395 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 427 (558)
..|..+...+...|++++|++.|+++++++|.+
T Consensus 2 ~~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 2 EAWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 356677778888888888888888888887764
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.63 E-value=0.69 Score=45.24 Aligned_cols=62 Identities=5% Similarity=-0.085 Sum_probs=33.3
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHH
Q 036003 393 TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLM 454 (558)
Q Consensus 393 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 454 (558)
|+.....+..+....++++.|...|+++..++|+.+.+|...+..+.-.|+.++|.+.+++.
T Consensus 337 Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~a 398 (458)
T PRK11906 337 DGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKS 398 (458)
T ss_pred CHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 44444444444444455555555555555555555555555555555555555555555543
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=94.62 E-value=0.075 Score=31.02 Aligned_cols=32 Identities=19% Similarity=0.152 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 036003 395 ILWRTLLSSCSSHNNLGLAKQVIERIFELDDS 426 (558)
Q Consensus 395 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 426 (558)
.+|..+..++...|++++|+..|+++++++|.
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 46777888888888888888888888888775
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.53 E-value=1.1 Score=44.72 Aligned_cols=154 Identities=10% Similarity=0.016 Sum_probs=80.7
Q ss_pred hcCCCchHHHHHHH--HhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCh
Q 036003 98 SRSKTPIRAIFLFV--ELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDV 175 (558)
Q Consensus 98 ~~~g~~~~A~~~~~--~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~ 175 (558)
.-.|+++++.+..+ ++.. .++ ..-.+.+++-+-+. |..+.|+++...-. .-.....++|++
T Consensus 272 v~~~d~~~v~~~i~~~~ll~-~i~--~~~~~~i~~fL~~~--G~~e~AL~~~~D~~------------~rFeLAl~lg~L 334 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLP-NIP--KDQGQSIARFLEKK--GYPELALQFVTDPD------------HRFELALQLGNL 334 (443)
T ss_dssp HHTT-HHH-----HHHHTGG-G----HHHHHHHHHHHHHT--T-HHHHHHHSS-HH------------HHHHHHHHCT-H
T ss_pred HHcCChhhhhhhhhhhhhcc-cCC--hhHHHHHHHHHHHC--CCHHHHHhhcCChH------------HHhHHHHhcCCH
Confidence 44566666655554 1111 111 23355555555555 77777766643321 224455677777
Q ss_pred HHHHHHHhccCCCCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhC
Q 036003 176 EAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYG 255 (558)
Q Consensus 176 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 255 (558)
+.|.++.++.. +...|..|.....++|+++-|.+.|.+... +..|+-.|.-.|+.+.-.++.+.....|
T Consensus 335 ~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 335 DIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 77777766654 555777777777777777777777776542 4455555666677666666666555544
Q ss_pred CCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 036003 256 LDKYVKVNTALIDMHAKCGRLDDAVSVFDN 285 (558)
Q Consensus 256 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 285 (558)
- ++....++.-.|+.++..+++.+
T Consensus 404 ~------~n~af~~~~~lgd~~~cv~lL~~ 427 (443)
T PF04053_consen 404 D------INIAFQAALLLGDVEECVDLLIE 427 (443)
T ss_dssp -------HHHHHHHHHHHT-HHHHHHHHHH
T ss_pred C------HHHHHHHHHHcCCHHHHHHHHHH
Confidence 1 23334444455666665555443
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=94.53 E-value=1.1 Score=37.32 Aligned_cols=49 Identities=10% Similarity=0.152 Sum_probs=19.2
Q ss_pred HCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHc
Q 036003 303 THGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSM 352 (558)
Q Consensus 303 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 352 (558)
+.|++++|..+|+-+...+.. +..-+..|..++...+++++|...|...
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~-n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A 97 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFY-NPDYTMGLAAVCQLKKQFQKACDLYAVA 97 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 344444444444444332211 2222333333334444444444444433
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.49 E-value=2.2 Score=34.90 Aligned_cols=42 Identities=19% Similarity=0.038 Sum_probs=20.4
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 036003 231 ALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKC 273 (558)
Q Consensus 231 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 273 (558)
++..+.+.+.......+++.+...+ ..+...++.++..|++.
T Consensus 13 vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 13 VVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 3444444445555555555555444 23444555555555543
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=94.48 E-value=0.4 Score=43.24 Aligned_cols=101 Identities=16% Similarity=0.103 Sum_probs=60.4
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHchhhcCCC-CChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCC-CHHHHHHHH
Q 036003 328 TFLGLLYACSHTGLVDEGWNYFYSMRDKYGIV-PGIKHYGCMVDLLGRAGRLDEAYRFIDEL----PIKS-TPILWRTLL 401 (558)
Q Consensus 328 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~-~~~~~~~l~ 401 (558)
.|+..+. +.+.|++..|.+.|....+++.-. -....+--|...+...|++++|..+|..+ +..| -+..+--|.
T Consensus 144 ~Y~~A~~-~~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALD-LYKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 4544443 344566777777777776632110 11233444667777777777777777665 2222 235556666
Q ss_pred HHHHhcCCHHHHHHHHHHHHccCCCCcc
Q 036003 402 SSCSSHNNLGLAKQVIERIFELDDSHGG 429 (558)
Q Consensus 402 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 429 (558)
.+..+.|+.++|...|+++.+.-|..+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 6777777778888777777777776544
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=94.30 E-value=5.3 Score=39.50 Aligned_cols=52 Identities=13% Similarity=0.069 Sum_probs=24.0
Q ss_pred HHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 036003 200 YARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY 254 (558)
Q Consensus 200 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 254 (558)
.-+..++..-++.-++..+ +.||..+.-.++ +-.......++++++++..+.
T Consensus 178 AWRERnp~aRIkaA~eALe--i~pdCAdAYILL-AEEeA~Ti~Eae~l~rqAvkA 229 (539)
T PF04184_consen 178 AWRERNPQARIKAAKEALE--INPDCADAYILL-AEEEASTIVEAEELLRQAVKA 229 (539)
T ss_pred HHhcCCHHHHHHHHHHHHH--hhhhhhHHHhhc-ccccccCHHHHHHHHHHHHHH
Confidence 3344445554455444444 245443322222 222334456666666666554
|
The molecular function of this protein is uncertain. |
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=94.09 E-value=2.4 Score=41.64 Aligned_cols=144 Identities=8% Similarity=0.023 Sum_probs=96.4
Q ss_pred hHHHHHHHHHHHH-CCCCCCH-HHHHHHHHHHHc---------cCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhc
Q 036003 307 GHKSILMFEEMMK-AQVSPDE-ITFLGLLYACSH---------TGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRA 375 (558)
Q Consensus 307 ~~~a~~~~~~m~~-~g~~p~~-~~~~~ll~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 375 (558)
.+.|+.+|.+... ..+.|+. ..|..+..++.. ..+..+|.++-++..+ --+.|......+..++.-.
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAve--ld~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSD--ITTVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHhh
Confidence 4577888888872 2256654 444444433321 2234556666666654 2234667777777777888
Q ss_pred CCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCccc--HHhHHHHHHhcCChHHHHHHH
Q 036003 376 GRLDEAYRFIDEL-PIKST-PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGD--YVILSNLCARAGRWEDVDYLR 451 (558)
Q Consensus 376 g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~ 451 (558)
++++.|..+|++. ...|| ..+|......+.-.|+.++|.+.++++++++|....+ ....++.|+.. ..++|.+++
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 430 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLY 430 (458)
T ss_pred cchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHHH
Confidence 8899999999998 55665 4566666667778899999999999999999886543 33344456554 467777776
Q ss_pred HH
Q 036003 452 KL 453 (558)
Q Consensus 452 ~~ 453 (558)
-+
T Consensus 431 ~~ 432 (458)
T PRK11906 431 YK 432 (458)
T ss_pred hh
Confidence 54
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=94.06 E-value=1.9 Score=40.01 Aligned_cols=155 Identities=12% Similarity=0.020 Sum_probs=89.7
Q ss_pred hcCCHHHHHHHHhccCCC---CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHccCChHH
Q 036003 272 KCGRLDDAVSVFDNMSGK---DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFL----GLLYACSHTGLVDE 344 (558)
Q Consensus 272 ~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~----~ll~~~~~~g~~~~ 344 (558)
-.|+..+|...++++.+. |..+++..-.+|...|+.+.-...+++.... ..|+...|. .+.-++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 346666666666666543 6667777777777778777777777776653 233432222 22334456777777
Q ss_pred HHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCH------HHHHHHHHHHHhcCCHHHHHHHHH
Q 036003 345 GWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTP------ILWRTLLSSCSSHNNLGLAKQVIE 418 (558)
Q Consensus 345 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~------~~~~~l~~~~~~~g~~~~a~~~~~ 418 (558)
|++.-++..+ --+.|.-.-.++...+...|+..++.+++.+-...-+. .-|--..-.+...+.++.|+++|+
T Consensus 194 AEk~A~ralq--iN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 194 AEKQADRALQ--INRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred HHHHHHhhcc--CCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 7777666654 22234555566677777777777877777665211110 011111223345577777877776
Q ss_pred HHH--ccCCCCcc
Q 036003 419 RIF--ELDDSHGG 429 (558)
Q Consensus 419 ~~~--~~~~~~~~ 429 (558)
+-+ ++..++..
T Consensus 272 ~ei~k~l~k~Da~ 284 (491)
T KOG2610|consen 272 REIWKRLEKDDAV 284 (491)
T ss_pred HHHHHHhhccchh
Confidence 633 34455553
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.00 E-value=4.2 Score=36.13 Aligned_cols=104 Identities=20% Similarity=0.282 Sum_probs=59.8
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Q 036003 90 FNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLY 169 (558)
Q Consensus 90 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~ 169 (558)
|.....+|-...++++|-..+.+..+ +..-+...|. + . ...+.|.-+.+++.+. +.-...|+--..+|
T Consensus 34 yekAAvafRnAk~feKakdcLlkA~~-~yEnnrslfh----A---A--KayEqaamLake~~kl--sEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 34 YEKAAVAFRNAKKFEKAKDCLLKASK-GYENNRSLFH----A---A--KAYEQAAMLAKELSKL--SEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHH-HHHhcccHHH----H---H--HHHHHHHHHHHHHHHh--HHHHHHHHHHHHHH
Confidence 44455677777788888777766653 1222222221 1 1 4456666666666543 23344566667778
Q ss_pred HhCCChHHHHHHHhccCCCCcchHHHHHHHHHHCCCccHHHHHHHHHH
Q 036003 170 AECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217 (558)
Q Consensus 170 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 217 (558)
..+|..+.|-..+++.-+ ...+.++++|+++|++..
T Consensus 102 ~E~GspdtAAmaleKAak------------~lenv~Pd~AlqlYqral 137 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAK------------ALENVKPDDALQLYQRAL 137 (308)
T ss_pred HHhCCcchHHHHHHHHHH------------HhhcCCHHHHHHHHHHHH
Confidence 888887777666665321 234456777777776643
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=93.69 E-value=7.3 Score=37.82 Aligned_cols=149 Identities=9% Similarity=0.005 Sum_probs=79.6
Q ss_pred CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCC--hhH
Q 036003 290 DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP---DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPG--IKH 364 (558)
Q Consensus 290 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~ 364 (558)
...+|..++..+.+.|.++.|...+.++...+... .......-+...-..|+..+|...++..... .+..+ ...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~~ 223 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSIS 223 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhcccccc
Confidence 45568888888888888888888888877643211 2222333344455667888888888777762 11111 111
Q ss_pred HHHHHHHHhhcCCHHHHHHH-HHhCCCCCCHHHHHHHHHHHHhc------CCHHHHHHHHHHHHccCCCCcccHHhHHHH
Q 036003 365 YGCMVDLLGRAGRLDEAYRF-IDELPIKSTPILWRTLLSSCSSH------NNLGLAKQVIERIFELDDSHGGDYVILSNL 437 (558)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~l~~~~~~~------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 437 (558)
...+...+.. ..+..... ........-...+..+...+... ++.+++...|+++.+..|.....|..++..
T Consensus 224 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~~ 301 (352)
T PF02259_consen 224 NAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWALF 301 (352)
T ss_pred HHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHHH
Confidence 1111111100 00000000 00000000112333333333344 788999999999999998887777777766
Q ss_pred HHhc
Q 036003 438 CARA 441 (558)
Q Consensus 438 ~~~~ 441 (558)
+.+.
T Consensus 302 ~~~~ 305 (352)
T PF02259_consen 302 NDKL 305 (352)
T ss_pred HHHH
Confidence 6443
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=93.59 E-value=3.2 Score=39.04 Aligned_cols=193 Identities=13% Similarity=0.059 Sum_probs=105.1
Q ss_pred HHHHHHHHHHhCCChHHHHHHHh-------ccCC--CCcchHHHHHHHHHHCCCccHHHHHHHHHHHC-CCCC---CHHH
Q 036003 161 VCTTLINLYAECSDVEAARRIFE-------NISE--PCVVSYNAIITAYARSSRPNEALSLFRELQER-NLKP---TDVT 227 (558)
Q Consensus 161 ~~~~ll~~~~~~g~~~~A~~~~~-------~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p---~~~~ 227 (558)
++..+..+.++.|.+++++..-- +..+ .-..+|-.+.+++-+.-++.+++.+-..-... |..| --..
T Consensus 45 ~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~~~ds~~~~ea~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~ 124 (518)
T KOG1941|consen 45 VLGCLVTAHSEMGRYKEMLKFAVSQIDTARELEDSDFLLEAYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQV 124 (518)
T ss_pred HhccchhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchh
Confidence 44455555566666555543221 1111 11223444555555555555555554433221 2222 1122
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhC-----CCCchhHHHHHHHHHHhcCCHHHHHHHHhccC-------CCCHH---
Q 036003 228 MLSALSSCALLGSLDLGKWIHEYIKKYG-----LDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS-------GKDTQ--- 292 (558)
Q Consensus 228 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~--- 292 (558)
..++..++...+.++++.+.|+...+.. .-....++-.|...|.+..++++|.-+..+.. -.|..
T Consensus 125 ~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~ky 204 (518)
T KOG1941|consen 125 SLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKY 204 (518)
T ss_pred hhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHH
Confidence 3345666667777888888777765432 22235667778888888888887765544332 12222
Q ss_pred ---hHHHHHHHHHHCCChHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHch
Q 036003 293 ---AWSAMIVAYATHGQGHKSILMFEEMMK----AQVSPD-EITFLGLLYACSHTGLVDEGWNYFYSMR 353 (558)
Q Consensus 293 ---~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 353 (558)
+.-.|..++...|+...|.+.-++..+ .|-+|. ......+.+.|...|+.+.|+.-|+...
T Consensus 205 r~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 205 RAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 223345567777777777777666543 443332 2345566677778888888877776654
|
|
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=93.48 E-value=3.6 Score=33.66 Aligned_cols=45 Identities=9% Similarity=-0.001 Sum_probs=24.5
Q ss_pred HHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhc
Q 036003 90 FNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACV 135 (558)
Q Consensus 90 ~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 135 (558)
-..++..+...+.+......++.+...+. .+....+.++..+++.
T Consensus 10 ~~~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~ 54 (140)
T smart00299 10 VSEVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHH
Confidence 34455555555556666666666555542 3445555555555543
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.16 E-value=0.42 Score=43.79 Aligned_cols=67 Identities=18% Similarity=0.156 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHh-----CCCcc
Q 036003 395 ILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKD-----RGVLK 461 (558)
Q Consensus 395 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~-----~g~~~ 461 (558)
.++..++..+...|+.+.+...+++.+..+|-+...|..++.+|.+.|+...|...++++.+ .|+.|
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P 225 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDP 225 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCc
Confidence 35566777788888889999999999999988888899999999999999999888887754 56655
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.85 E-value=2.7 Score=39.49 Aligned_cols=149 Identities=11% Similarity=0.041 Sum_probs=89.6
Q ss_pred CCCCHHHHHHHHHhccC-CchH----HHHHHHHHHhCCCCChhHHHHHHHHhhc--C-CCCCCHHHHHHHHccCCC----
Q 036003 17 LCTNTPNALSLLPRCTS-FRGL----KQIHAVTIKTHLQNDLNVLTKLINFCTQ--N-PTTSSMEHAHLLFDRIPE---- 84 (558)
Q Consensus 17 ~~p~~~~~~~ll~~~~~-~~~~----~~~~~~~~~~g~~~~~~~~~~li~~~~~--~-~~~~~~~~A~~~~~~~~~---- 84 (558)
......++++++..... .... ..+++.|.+.|+..+.+++-+-.-.... . ..+....+|..+++.|.+
T Consensus 56 r~~~~~~la~~l~~~~~~p~~~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~f 135 (297)
T PF13170_consen 56 RGNHRFILAALLDISFEDPEEAFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPF 135 (297)
T ss_pred cccHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCcc
Confidence 34456778888877776 2222 7888889999998888777664443333 1 111234567788888864
Q ss_pred ---CCcccHHHHHHHHhcCCCc----hHHHHHHHHhHHCCCCCCcc--cHHHHHHHHHhcCcccHHHHHHHHHHHHHhCC
Q 036003 85 ---PDIVLFNTMARGYSRSKTP----IRAIFLFVELLNSGLLPDDY--SFPSLLKACACVGAEALEEGKQLHCFAIKLGL 155 (558)
Q Consensus 85 ---~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~g~~p~~~--~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~ 155 (558)
++-.++..|+.. ..+++ +.+..+|+.+.+.|+..+.. ....++..+-........++.++++.+.+.|+
T Consensus 136 LTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~ 213 (297)
T PF13170_consen 136 LTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGV 213 (297)
T ss_pred ccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCC
Confidence 344556666554 33333 45667777777777765433 33334433322211224567778888888887
Q ss_pred CChHHHHHHHHH
Q 036003 156 NSNLYVCTTLIN 167 (558)
Q Consensus 156 ~~~~~~~~~ll~ 167 (558)
++....|..+.-
T Consensus 214 kik~~~yp~lGl 225 (297)
T PF13170_consen 214 KIKYMHYPTLGL 225 (297)
T ss_pred ccccccccHHHH
Confidence 777666665443
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=92.84 E-value=2.3 Score=39.94 Aligned_cols=130 Identities=14% Similarity=0.154 Sum_probs=67.4
Q ss_pred cHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh--CC----ChHHHHHHHhccCC-------CCcchHHHHHHHHHHCCC
Q 036003 139 ALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAE--CS----DVEAARRIFENISE-------PCVVSYNAIITAYARSSR 205 (558)
Q Consensus 139 ~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~--~g----~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~g~ 205 (558)
.+++...+++.+.+.|+.-+..+|-+..-.... .. ....|..+|+.|.+ ++-.++..++.. ..++
T Consensus 77 ~~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~ 154 (297)
T PF13170_consen 77 AFKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSED 154 (297)
T ss_pred HHHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--cccc
Confidence 344555566666666666555554442222222 11 23456666666654 333444444433 2222
Q ss_pred ----ccHHHHHHHHHHHCCCCCCHH-HHHHHHHHHhccC-C--hHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 036003 206 ----PNEALSLFRELQERNLKPTDV-TMLSALSSCALLG-S--LDLGKWIHEYIKKYGLDKYVKVNTALIDMH 270 (558)
Q Consensus 206 ----~~~A~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~-~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 270 (558)
.+.+..+|+.+.+.|...... .+.+-+-++.... . ..++..+++.+.+.|+++....|..+.-..
T Consensus 155 ~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 155 VEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHH
Confidence 244566677777766655332 2333333332222 1 346677888888888887777776554433
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.65 E-value=1.1 Score=41.49 Aligned_cols=160 Identities=11% Similarity=-0.010 Sum_probs=118.0
Q ss_pred HHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHH----HHHHHHhhcCC
Q 036003 302 ATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYG----CMVDLLGRAGR 377 (558)
Q Consensus 302 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~----~li~~~~~~g~ 377 (558)
.-.|++.+|-..++++.+. .+.|...+...=.+|...|+.+.-...++++.. ...++...|. .+.-++..+|-
T Consensus 114 ~~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip--~wn~dlp~~sYv~GmyaFgL~E~g~ 190 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIP--KWNADLPCYSYVHGMYAFGLEECGI 190 (491)
T ss_pred hccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhcc--ccCCCCcHHHHHHHHHHhhHHHhcc
Confidence 3578888999999999885 455667777778899999999999999999886 4456654444 34455668999
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC----cccHHhHHHHHHhcCChHHHHHHH
Q 036003 378 LDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH----GGDYVILSNLCARAGRWEDVDYLR 451 (558)
Q Consensus 378 ~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~A~~~~ 451 (558)
+++|++.-++. .+++ |.-.-.+....+.-.|+..++.++..+-...-..+ ...|-...-.+...+.++.|+++|
T Consensus 191 y~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIy 270 (491)
T KOG2610|consen 191 YDDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIY 270 (491)
T ss_pred chhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHH
Confidence 99999999987 4444 55566777888888999999999887765433221 223556666777889999999999
Q ss_pred HHHHhCCCccCCc
Q 036003 452 KLMKDRGVLKVPG 464 (558)
Q Consensus 452 ~~m~~~g~~~~~~ 464 (558)
+.=.-.....+.+
T Consensus 271 D~ei~k~l~k~Da 283 (491)
T KOG2610|consen 271 DREIWKRLEKDDA 283 (491)
T ss_pred HHHHHHHhhccch
Confidence 8665444444443
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.58 E-value=5.6 Score=41.83 Aligned_cols=178 Identities=13% Similarity=0.067 Sum_probs=113.1
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCCc--hhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCC
Q 036003 228 MLSALSSCALLGSLDLGKWIHEYIKKYGLDKY--VKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHG 305 (558)
Q Consensus 228 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~ 305 (558)
...-+....+...++-|..+-+ ..+..++ ........+-+.+.|++++|...|-+-..--. -..+|.-|....
T Consensus 337 le~kL~iL~kK~ly~~Ai~LAk---~~~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le--~s~Vi~kfLdaq 411 (933)
T KOG2114|consen 337 LETKLDILFKKNLYKVAINLAK---SQHLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLE--PSEVIKKFLDAQ 411 (933)
T ss_pred HHHHHHHHHHhhhHHHHHHHHH---hcCCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCC--hHHHHHHhcCHH
Confidence 4455666667777777766543 3333333 22333445556678999999877765432211 134566677777
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHH
Q 036003 306 QGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFI 385 (558)
Q Consensus 306 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 385 (558)
+...-..+++.+.+.|+. +...-..|+.+|.+.++.+.-.++.+...+. .+.-| ....+..+.+.+-.++|..+-
T Consensus 412 ~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g-~~~fd---~e~al~Ilr~snyl~~a~~LA 486 (933)
T KOG2114|consen 412 RIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKG-EWFFD---VETALEILRKSNYLDEAELLA 486 (933)
T ss_pred HHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCc-ceeee---HHHHHHHHHHhChHHHHHHHH
Confidence 777888888999998876 4444567889999999998877776655421 11112 344667777788888888777
Q ss_pred HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036003 386 DELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERI 420 (558)
Q Consensus 386 ~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 420 (558)
.+... +......+ +...+++++|+++++.+
T Consensus 487 ~k~~~--he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 487 TKFKK--HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHhcc--CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 77653 33333333 44568899999888754
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=92.49 E-value=5.7 Score=33.31 Aligned_cols=27 Identities=11% Similarity=0.064 Sum_probs=14.6
Q ss_pred cHHhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 430 DYVILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 430 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
.-..|.-+-.+.|++.+|.+.|+.+..
T Consensus 169 ArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 169 AREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 334455555556666666666655543
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.33 E-value=17 Score=38.46 Aligned_cols=176 Identities=14% Similarity=0.043 Sum_probs=109.8
Q ss_pred HHHHHHHHhhcCCCCCCHHHHHHHHccCCCCCccc----HHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHH
Q 036003 55 VLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVL----FNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLK 130 (558)
Q Consensus 55 ~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~----~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 130 (558)
....-+..+.+. .-++.|..+-+.-.. |... .....+.+-+.|++++|...|-+-... +.| ..++.
T Consensus 336 ~le~kL~iL~kK---~ly~~Ai~LAk~~~~-d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~-le~-----s~Vi~ 405 (933)
T KOG2114|consen 336 DLETKLDILFKK---NLYKVAINLAKSQHL-DEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGF-LEP-----SEVIK 405 (933)
T ss_pred cHHHHHHHHHHh---hhHHHHHHHHHhcCC-CHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHccc-CCh-----HHHHH
Confidence 444556666666 778888887766443 3322 223345556789999999988776532 233 34566
Q ss_pred HHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCCCCcc-hHHHHHHHHHHCCCccHH
Q 036003 131 ACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVV-SYNAIITAYARSSRPNEA 209 (558)
Q Consensus 131 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A 209 (558)
-+... ....+-..+++.+.+.|+. +...-..|+++|.+.++.++-.++.+...+.... -....+..+.+.+-.++|
T Consensus 406 kfLda--q~IknLt~YLe~L~~~gla-~~dhttlLLncYiKlkd~~kL~efI~~~~~g~~~fd~e~al~Ilr~snyl~~a 482 (933)
T KOG2114|consen 406 KFLDA--QRIKNLTSYLEALHKKGLA-NSDHTTLLLNCYIKLKDVEKLTEFISKCDKGEWFFDVETALEILRKSNYLDEA 482 (933)
T ss_pred HhcCH--HHHHHHHHHHHHHHHcccc-cchhHHHHHHHHHHhcchHHHHHHHhcCCCcceeeeHHHHHHHHHHhChHHHH
Confidence 66666 7788888888888888865 4455567899999999999888888776621111 134455666666666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 036003 210 LSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251 (558)
Q Consensus 210 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 251 (558)
..+-..... .......+ +-..+++++|.++++.+
T Consensus 483 ~~LA~k~~~-----he~vl~il---le~~~ny~eAl~yi~sl 516 (933)
T KOG2114|consen 483 ELLATKFKK-----HEWVLDIL---LEDLHNYEEALRYISSL 516 (933)
T ss_pred HHHHHHhcc-----CHHHHHHH---HHHhcCHHHHHHHHhcC
Confidence 555444322 22222222 23456777777766543
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.20 E-value=1.1 Score=35.37 Aligned_cols=89 Identities=13% Similarity=-0.002 Sum_probs=48.2
Q ss_pred HHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCC
Q 036003 336 CSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL----PIKST--PILWRTLLSSCSSHNN 409 (558)
Q Consensus 336 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~ 409 (558)
....|+.+.|++.|..... -.+-....||.-..++.-+|+.++|++-+++. +-+.. -..|..-...|...|+
T Consensus 53 laE~g~Ld~AlE~F~qal~--l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 53 LAEAGDLDGALELFGQALC--LAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHhccchHHHHHHHHHHHH--hcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCc
Confidence 3455566666666655553 23334555666566666666666665555543 10100 1223333445666777
Q ss_pred HHHHHHHHHHHHccCCC
Q 036003 410 LGLAKQVIERIFELDDS 426 (558)
Q Consensus 410 ~~~a~~~~~~~~~~~~~ 426 (558)
.+.|..-|+.+.+++.+
T Consensus 131 dd~AR~DFe~AA~LGS~ 147 (175)
T KOG4555|consen 131 DDAARADFEAAAQLGSK 147 (175)
T ss_pred hHHHHHhHHHHHHhCCH
Confidence 77777777777776643
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.17 E-value=17 Score=38.11 Aligned_cols=68 Identities=16% Similarity=0.304 Sum_probs=38.6
Q ss_pred HHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCH
Q 036003 331 GLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNL 410 (558)
Q Consensus 331 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 410 (558)
..+..|.+.|-+++-.-++.+|-. ++.+|.-.--+.+++++|+++.++ ..|...|..||..+...-.+
T Consensus 639 kA~eiC~q~~~~~E~VYlLgrmGn---------~k~AL~lII~el~die~AIefvKe---q~D~eLWe~LI~~~ldkPe~ 706 (846)
T KOG2066|consen 639 KALEICSQKNFYEELVYLLGRMGN---------AKEALKLIINELRDIEKAIEFVKE---QDDSELWEDLINYSLDKPEF 706 (846)
T ss_pred HHHHHHHhhCcHHHHHHHHHhhcc---------hHHHHHHHHHHhhCHHHHHHHHHh---cCCHHHHHHHHHHhhcCcHH
Confidence 444555555555555555555531 233333334455666677766665 45778888888776544333
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=92.01 E-value=0.3 Score=28.96 Aligned_cols=25 Identities=12% Similarity=0.064 Sum_probs=14.0
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 036003 397 WRTLLSSCSSHNNLGLAKQVIERIF 421 (558)
Q Consensus 397 ~~~l~~~~~~~g~~~~a~~~~~~~~ 421 (558)
|..|...|.+.|++++|++++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4555556666666666666666643
|
|
| >PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A | Back alignment and domain information |
|---|
Probab=91.95 E-value=0.32 Score=28.20 Aligned_cols=31 Identities=16% Similarity=0.169 Sum_probs=23.7
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 036003 396 LWRTLLSSCSSHNNLGLAKQVIERIFELDDS 426 (558)
Q Consensus 396 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 426 (558)
+|..+...|...|++++|...|++++++.|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 5666777778888888888888888877763
|
... |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=91.92 E-value=14 Score=36.67 Aligned_cols=174 Identities=10% Similarity=0.088 Sum_probs=108.7
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhccCC--CCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036003 257 DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSG--KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLY 334 (558)
Q Consensus 257 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 334 (558)
+.|....-+++..+..+-++.-.+.+..+|.. .+-..|-.++++|..+ ..++-..+|+++.+..+. |.+.-..|..
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa~ 140 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELAD 140 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHHH
Confidence 34445555667777776666666666666653 3566777888888887 567778888888875432 3333444444
Q ss_pred HHHccCChHHHHHHHHHchhhcCCCCC------hhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHH
Q 036003 335 ACSHTGLVDEGWNYFYSMRDKYGIVPG------IKHYGCMVDLLGRAGRLDEAYRFIDEL----PIKSTPILWRTLLSSC 404 (558)
Q Consensus 335 ~~~~~g~~~~a~~~~~~~~~~~~~~~~------~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~l~~~~ 404 (558)
.|-+ ++...+..+|.++.. .+.|- ...|.-|+..- ..+.+....+..++ +...-.+.+..+-.-|
T Consensus 141 ~yEk-ik~sk~a~~f~Ka~y--rfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 141 KYEK-IKKSKAAEFFGKALY--RFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHH-hchhhHHHHHHHHHH--HhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 4444 777888888888775 33331 23444444322 24555555555554 2223345566666778
Q ss_pred HhcCCHHHHHHHHHHHHccCCCCcccHHhHHHH
Q 036003 405 SSHNNLGLAKQVIERIFELDDSHGGDYVILSNL 437 (558)
Q Consensus 405 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 437 (558)
....++++|++++..+++.+..+.-+-..++.-
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~ 248 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEKDVWARKEIIEN 248 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcchhhhHHHHHHHH
Confidence 888899999999998888876665544444443
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=91.79 E-value=8.8 Score=37.21 Aligned_cols=65 Identities=15% Similarity=0.182 Sum_probs=52.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCC----CCcccHHhHHHHHHhcCChHHHHHHHHHHHhC
Q 036003 393 TPILWRTLLSSCSSHNNLGLAKQVIERIFELDD----SHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 393 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
...+|..+...+.+.|+++.|...+.++...++ ..+.....-+..+...|+..+|...++...+.
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 456788889999999999999999999887652 13456666788888999999999998888763
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=91.67 E-value=11 Score=34.77 Aligned_cols=119 Identities=8% Similarity=0.035 Sum_probs=69.3
Q ss_pred HHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCC-H---HhHHHHHHHHHHCCCh
Q 036003 232 LSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKD-T---QAWSAMIVAYATHGQG 307 (558)
Q Consensus 232 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~---~~~~~li~~~~~~~~~ 307 (558)
.......|++.+|..+|+........ +...--.+..+|...|+.+.|..++..+.... . .....-|..+.+....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~-~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPE-NSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcc-cchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 33456778888888888888776432 34455568888888999999999988887441 1 1112223333333333
Q ss_pred HHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHchh
Q 036003 308 HKSILMFEEMMKAQVSP-DEITFLGLLYACSHTGLVDEGWNYFYSMRD 354 (558)
Q Consensus 308 ~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 354 (558)
.+...+-++.-. .| |...-..+...+...|+.+.|.+.+-.+.+
T Consensus 220 ~~~~~l~~~~aa---dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~ 264 (304)
T COG3118 220 PEIQDLQRRLAA---DPDDVEAALALADQLHLVGRNEAALEHLLALLR 264 (304)
T ss_pred CCHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 333333333332 34 444444555666666777777665555444
|
|
| >KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=91.60 E-value=37 Score=40.73 Aligned_cols=305 Identities=10% Similarity=0.034 Sum_probs=160.8
Q ss_pred ccHHHHHHHHHHHHHhCC--CChHHHHHHHHHHHHhCCChHHHHHHHhc-cCCCCcchHHHHHHHHHHCCCccHHHHHHH
Q 036003 138 EALEEGKQLHCFAIKLGL--NSNLYVCTTLINLYAECSDVEAARRIFEN-ISEPCVVSYNAIITAYARSSRPNEALSLFR 214 (558)
Q Consensus 138 ~~~~~a~~~~~~~~~~g~--~~~~~~~~~ll~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~li~~~~~~g~~~~A~~~~~ 214 (558)
+.+.+|...++.-..... ......|-.+...|+.-++.|....+... ...++ ...-|......|++..|...|+
T Consensus 1397 ~~y~RalmylEs~~~~ek~~~~~e~l~fllq~lY~~i~dpDgV~Gv~~~r~a~~s---l~~qil~~e~~g~~~da~~Cye 1473 (2382)
T KOG0890|consen 1397 KAYARALMYLESHRSTEKEKETEEALYFLLQNLYGSIHDPDGVEGVSARRFADPS---LYQQILEHEASGNWADAAACYE 1473 (2382)
T ss_pred HHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHHhcCCcchhhhHHHHhhcCcc---HHHHHHHHHhhccHHHHHHHHH
Confidence 777788877776311110 11223344455588888888887777663 32232 2234445667788999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHH-HHHHHHhcCCHHHHHHHHhccCCCCHHh
Q 036003 215 ELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTA-LIDMHAKCGRLDDAVSVFDNMSGKDTQA 293 (558)
Q Consensus 215 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 293 (558)
.+.+.+ ++...+++.++......+.++...-..+-.... ..+....++. =+.+--+.++++....... ..+..+
T Consensus 1474 ~~~q~~-p~~~~~~~g~l~sml~~~~l~t~i~~~dg~~~~-~se~~~~~~s~~~eaaW~l~qwD~~e~~l~---~~n~e~ 1548 (2382)
T KOG0890|consen 1474 RLIQKD-PDKEKHHSGVLKSMLAIQHLSTEILHLDGLIIN-RSEEVDELNSLGVEAAWRLSQWDLLESYLS---DRNIEY 1548 (2382)
T ss_pred HhhcCC-CccccchhhHHHhhhcccchhHHHhhhcchhhc-cCHHHHHHHHHHHHHHhhhcchhhhhhhhh---cccccc
Confidence 888763 333667777777766777777666544433322 1222222222 2344456677777666655 445555
Q ss_pred HHHH--HHHHHHCCC--hHHHHHHHHHHHHCCCCC--------C-HHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCC
Q 036003 294 WSAM--IVAYATHGQ--GHKSILMFEEMMKAQVSP--------D-EITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVP 360 (558)
Q Consensus 294 ~~~l--i~~~~~~~~--~~~a~~~~~~m~~~g~~p--------~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 360 (558)
|... +..+.+... .-.-.+..+.+.+.-+.| + ...|..++....-.. .+.-.+.+. +..+
T Consensus 1549 w~~~~~g~~ll~~~~kD~~~~~~~i~~~r~~~i~~lsa~s~~~Sy~~~Y~~~~kLH~l~e-l~~~~~~l~------~~s~ 1621 (2382)
T KOG0890|consen 1549 WSVESIGKLLLRNKKKDEIATLDLIENSRELVIENLSACSIEGSYVRSYEILMKLHLLLE-LENSIEELK------KVSY 1621 (2382)
T ss_pred hhHHHHHHHHHhhcccchhhHHHHHHHHHHHhhhhHHHhhccchHHHHHHHHHHHHHHHH-HHHHHHHhh------ccCc
Confidence 5544 222222221 111112333332211111 0 122333333222111 111111111 2222
Q ss_pred C------hhHHHHHHHHHhhcCCHHHHHHHHHh----CCCCC-----CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCC
Q 036003 361 G------IKHYGCMVDLLGRAGRLDEAYRFIDE----LPIKS-----TPILWRTLLSSCSSHNNLGLAKQVIERIFELDD 425 (558)
Q Consensus 361 ~------~~~~~~li~~~~~~g~~~~A~~~~~~----~~~~~-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 425 (558)
+ ...|..-+..-....+..+-+--+++ ...+| -..+|-...+.....|.++.|...+-++.+..+
T Consensus 1622 ~~~s~~~sd~W~~Rl~~tq~s~~~~epILa~RRs~l~~~~~~~~~~~~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~ 1701 (2382)
T KOG0890|consen 1622 DEDSANNSDNWKNRLERTQPSFRIKEPILAFRRSMLDLRMRSNLKSRLGECWLQSARIARLAGHLQRAQNALLNAKESRL 1701 (2382)
T ss_pred cccccccchhHHHHHHHhchhHHHHhHHHHHHHHHHHHhccccccchhHHHHHHHHHHHHhcccHHHHHHHHHhhhhccc
Confidence 2 11222222111111112221111221 11122 236788888889999999999999988888874
Q ss_pred CCcccHHhHHHHHHhcCChHHHHHHHHHHHhCCC
Q 036003 426 SHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGV 459 (558)
Q Consensus 426 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 459 (558)
+ ..+.-.+..+...|+...|..++++..+...
T Consensus 1702 ~--~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~ 1733 (2382)
T KOG0890|consen 1702 P--EIVLERAKLLWQTGDELNALSVLQEILSKNF 1733 (2382)
T ss_pred c--hHHHHHHHHHHhhccHHHHHHHHHHHHHhhc
Confidence 4 6788889999999999999999998876544
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=91.50 E-value=12 Score=34.95 Aligned_cols=17 Identities=18% Similarity=-0.050 Sum_probs=9.7
Q ss_pred HHhcCCHHHHHHHHHHH
Q 036003 404 CSSHNNLGLAKQVIERI 420 (558)
Q Consensus 404 ~~~~g~~~~a~~~~~~~ 420 (558)
+.+.+++++|.+.|+-.
T Consensus 256 ~~~~k~y~~A~~w~~~a 272 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELA 272 (278)
T ss_pred HHhhcCHHHHHHHHHHH
Confidence 34556666666666543
|
It is also involved in sporulation []. |
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=91.46 E-value=0.33 Score=28.80 Aligned_cols=26 Identities=12% Similarity=0.073 Sum_probs=22.3
Q ss_pred cHHhHHHHHHhcCChHHHHHHHHHHH
Q 036003 430 DYVILSNLCARAGRWEDVDYLRKLMK 455 (558)
Q Consensus 430 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 455 (558)
+|..|+.+|.+.|+|++|.+++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46789999999999999999999854
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=91.29 E-value=0.7 Score=39.44 Aligned_cols=86 Identities=14% Similarity=0.080 Sum_probs=59.7
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCCh
Q 036003 372 LGRAGRLDEAYRFIDEL-PIKS------TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRW 444 (558)
Q Consensus 372 ~~~~g~~~~A~~~~~~~-~~~~------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 444 (558)
+.+.|++++|..-|.+. ..-| ..+.|..-..++.+.+.++.|+.-..++++++|....+...-+.+|.+...+
T Consensus 105 ~F~ngdyeeA~skY~~Ale~cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeayek~ek~ 184 (271)
T KOG4234|consen 105 LFKNGDYEEANSKYQEALESCPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYEKMEKY 184 (271)
T ss_pred hhhcccHHHHHHHHHHHHHhCccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHHhhhhH
Confidence 45566666666655554 1111 1234555556677788888888888888888887777777777888888888
Q ss_pred HHHHHHHHHHHhC
Q 036003 445 EDVDYLRKLMKDR 457 (558)
Q Consensus 445 ~~A~~~~~~m~~~ 457 (558)
++|+.-|+++.+.
T Consensus 185 eealeDyKki~E~ 197 (271)
T KOG4234|consen 185 EEALEDYKKILES 197 (271)
T ss_pred HHHHHHHHHHHHh
Confidence 8888888887764
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=91.20 E-value=5.1 Score=34.37 Aligned_cols=94 Identities=13% Similarity=0.047 Sum_probs=53.8
Q ss_pred hHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCH--HHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCCh------hH
Q 036003 293 AWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDE--ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGI------KH 364 (558)
Q Consensus 293 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~ 364 (558)
.+..+...|++.|+.+.|++.|.++.+....+.. ..+-.+|......+++..+.....+.........|. .+
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 3556666777777777777777777665544443 345566666666777777766666655421111111 12
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC
Q 036003 365 YGCMVDLLGRAGRLDEAYRFIDEL 388 (558)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~~~~~~ 388 (558)
|..| .+...+++.+|-+.|-+.
T Consensus 118 ~~gL--~~l~~r~f~~AA~~fl~~ 139 (177)
T PF10602_consen 118 YEGL--ANLAQRDFKEAAELFLDS 139 (177)
T ss_pred HHHH--HHHHhchHHHHHHHHHcc
Confidence 2222 233467777777777665
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=90.89 E-value=2 Score=39.48 Aligned_cols=76 Identities=20% Similarity=0.306 Sum_probs=55.0
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhccCCC---CHHhHHHHHHHHHHCCChHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 036003 260 VKVNTALIDMHAKCGRLDDAVSVFDNMSGK---DTQAWSAMIVAYATHGQGHKSILMFEEMMK-----AQVSPDEITFLG 331 (558)
Q Consensus 260 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~~~~ 331 (558)
..++..++..+...|+.+.+...++++... +...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 345566778888888888888888877643 667788888888888888888888887765 567776655544
Q ss_pred HHHH
Q 036003 332 LLYA 335 (558)
Q Consensus 332 ll~~ 335 (558)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4443
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.06 E-value=3.6 Score=34.46 Aligned_cols=137 Identities=10% Similarity=-0.011 Sum_probs=89.6
Q ss_pred CcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHH---H
Q 036003 86 DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYV---C 162 (558)
Q Consensus 86 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~---~ 162 (558)
+...|..-+. +++.+..++|+.-|.++.+.|..- -..+..+=.+-....+|+...|...|+++-.....|-..- -
T Consensus 58 sgd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~-YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~AR 135 (221)
T COG4649 58 SGDAFLAALK-LAQENKTDDALAAFTDLEKTGYGS-YPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLAR 135 (221)
T ss_pred chHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCc-chHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHH
Confidence 4445555554 467788999999999999886541 1112222222223333999999999999877544443321 1
Q ss_pred HHHHHHHHhCCChHHHHHHHhccCCC----CcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCC
Q 036003 163 TTLINLYAECSDVEAARRIFENISEP----CVVSYNAIITAYARSSRPNEALSLFRELQERNLKPT 224 (558)
Q Consensus 163 ~~ll~~~~~~g~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~ 224 (558)
-.-..++...|.+++.....+-+..+ -...-.+|.-+-.+.|++.+|.+.|..+......|.
T Consensus 136 lraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~Da~apr 201 (221)
T COG4649 136 LRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIANDAQAPR 201 (221)
T ss_pred HHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHccccCcH
Confidence 11223467889999998888877642 123445677777889999999999999877544443
|
|
| >COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=89.35 E-value=14 Score=32.33 Aligned_cols=163 Identities=11% Similarity=0.075 Sum_probs=87.6
Q ss_pred CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHH
Q 036003 290 DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMV 369 (558)
Q Consensus 290 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 369 (558)
-+..||-+.--+...|+++.|.+.|+...+....-+-...|.-| ++.-.|++.-|.+-+-..-+.-.-.|-...|--++
T Consensus 98 m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi-~~YY~gR~~LAq~d~~~fYQ~D~~DPfR~LWLYl~ 176 (297)
T COG4785 98 MPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGI-ALYYGGRYKLAQDDLLAFYQDDPNDPFRSLWLYLN 176 (297)
T ss_pred cHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccce-eeeecCchHhhHHHHHHHHhcCCCChHHHHHHHHH
Confidence 35667888888888888888888888887743222222222222 23445777777766655554212223223333222
Q ss_pred HHHhhcCCHHHHHHHH-HhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC-------cccHHhHHHHHHhc
Q 036003 370 DLLGRAGRLDEAYRFI-DELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH-------GGDYVILSNLCARA 441 (558)
Q Consensus 370 ~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~ 441 (558)
. ..-++.+|..-+ ++.. ..|..-|...+-.+.- |++. .+.+++++.+-..++ ..+|..|+.-|...
T Consensus 177 E---~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~n~~~Ae~LTEtyFYL~K~~l~~ 250 (297)
T COG4785 177 E---QKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYL-GKIS-EETLMERLKADATDNTSLAEHLTETYFYLGKYYLSL 250 (297)
T ss_pred H---hhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccchHHHHHHHHHHHHHHHHHHhcc
Confidence 2 233455554433 3332 2344444443333321 2211 122333333322222 35788888999999
Q ss_pred CChHHHHHHHHHHHhCCC
Q 036003 442 GRWEDVDYLRKLMKDRGV 459 (558)
Q Consensus 442 g~~~~A~~~~~~m~~~g~ 459 (558)
|+.++|..+|+-....++
T Consensus 251 G~~~~A~~LfKLaiannV 268 (297)
T COG4785 251 GDLDEATALFKLAVANNV 268 (297)
T ss_pred ccHHHHHHHHHHHHHHhH
Confidence 999999999987776544
|
|
| >PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A | Back alignment and domain information |
|---|
Probab=89.27 E-value=2.8 Score=27.48 Aligned_cols=50 Identities=10% Similarity=0.085 Sum_probs=35.2
Q ss_pred HHhHHHHHHhcCChHHHHHHHHHHHhCCCccCCcccEEEECCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHcCc
Q 036003 431 YVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGY 506 (558)
Q Consensus 431 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~ 506 (558)
...+..++.+.|++++|.+..+.+.+. .|...++..+-+.+.+.|..+|+
T Consensus 4 lY~lAig~ykl~~Y~~A~~~~~~lL~~--------------------------eP~N~Qa~~L~~~i~~~i~kdgl 53 (53)
T PF14853_consen 4 LYYLAIGHYKLGEYEKARRYCDALLEI--------------------------EPDNRQAQSLKELIEDKIQKDGL 53 (53)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHH--------------------------TTS-HHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhh--------------------------CCCcHHHHHHHHHHHHHHhccCC
Confidence 456778899999999999999999873 23334555555566677777774
|
|
| >KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=89.17 E-value=15 Score=32.52 Aligned_cols=53 Identities=6% Similarity=-0.071 Sum_probs=30.5
Q ss_pred HHhcCCHHHHHHHHHHHHccCCCCccc------HH-hHHHHHHhcCChHHHHHHHHHHHh
Q 036003 404 CSSHNNLGLAKQVIERIFELDDSHGGD------YV-ILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 404 ~~~~g~~~~a~~~~~~~~~~~~~~~~~------~~-~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
-...+++.+|+.+|++.....-+++-. |. .-+-++.-..+.-.+...+++..+
T Consensus 164 aa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~~~D~v~a~~ALeky~~ 223 (288)
T KOG1586|consen 164 AAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLCKADEVNAQRALEKYQE 223 (288)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHhcccHHHHHHHHHHHHh
Confidence 456789999999999987655444322 11 112222222455556666666655
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=89.14 E-value=33 Score=36.27 Aligned_cols=66 Identities=20% Similarity=0.048 Sum_probs=41.9
Q ss_pred CcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcc-----cHHHHHHHHHHHHHh
Q 036003 86 DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAE-----ALEEGKQLHCFAIKL 153 (558)
Q Consensus 86 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~-----~~~~a~~~~~~~~~~ 153 (558)
+...| ++|-.+.|.|++++|.++..+..+. .......|...+..+...+.+ .-++...-|++..+.
T Consensus 111 ~~p~W-a~Iyy~LR~G~~~~A~~~~~~~~~~-~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~ 181 (613)
T PF04097_consen 111 GDPIW-ALIYYCLRCGDYDEALEVANENRNQ-FQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRN 181 (613)
T ss_dssp TEEHH-HHHHHHHTTT-HHHHHHHHHHTGGG-S-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT
T ss_pred CCccH-HHHHHHHhcCCHHHHHHHHHHhhhh-hcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcC
Confidence 44455 5677889999999999999666543 555667788888888765311 223444555555444
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=88.79 E-value=3.9 Score=37.71 Aligned_cols=97 Identities=15% Similarity=0.195 Sum_probs=70.9
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC---------CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCC
Q 036003 255 GLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK---------DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPD 325 (558)
Q Consensus 255 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 325 (558)
|.+....+...++..-....+++.+...+-++... ..++|-.++ ..-++++++.++..=++-|+-||
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irll----lky~pq~~i~~l~npIqYGiF~d 134 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLL----LKYDPQKAIYTLVNPIQYGIFPD 134 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHH----HccChHHHHHHHhCcchhccccc
Confidence 44455555555666666667788888877766532 233333332 33467799999999999999999
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHchhh
Q 036003 326 EITFLGLLYACSHTGLVDEGWNYFYSMRDK 355 (558)
Q Consensus 326 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 355 (558)
.++++.+|+.+.+.+++.+|.++.-.|...
T Consensus 135 qf~~c~l~D~flk~~n~~~aa~vvt~~~~q 164 (418)
T KOG4570|consen 135 QFTFCLLMDSFLKKENYKDAASVVTEVMMQ 164 (418)
T ss_pred hhhHHHHHHHHHhcccHHHHHHHHHHHHHH
Confidence 999999999999999999998888777664
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=88.69 E-value=21 Score=33.37 Aligned_cols=181 Identities=10% Similarity=0.017 Sum_probs=77.2
Q ss_pred CChHHHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHHCCCc----cHHHHHHHHHHHCCCCCCHHHHHHH
Q 036003 156 NSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRP----NEALSLFRELQERNLKPTDVTMLSA 231 (558)
Q Consensus 156 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~----~~A~~~~~~m~~~~~~p~~~~~~~l 231 (558)
.+|..+....+..+...|..+-...+..-+..+|...-...+.++.+.|+. .++...+..+... .++...-...
T Consensus 34 d~d~~vR~~A~~aL~~~~~~~~~~~l~~ll~~~d~~vR~~A~~aLg~lg~~~~~~~~a~~~L~~l~~~--D~d~~VR~~A 111 (280)
T PRK09687 34 DHNSLKRISSIRVLQLRGGQDVFRLAIELCSSKNPIERDIGADILSQLGMAKRCQDNVFNILNNLALE--DKSACVRASA 111 (280)
T ss_pred CCCHHHHHHHHHHHHhcCcchHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHhc--CCCHHHHHHH
Confidence 345555555555555555433333333333345555555556666666653 3456666555332 3444444444
Q ss_pred HHHHhccCChHH--HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCC-ChH
Q 036003 232 LSSCALLGSLDL--GKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHG-QGH 308 (558)
Q Consensus 232 l~~~~~~~~~~~--a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~-~~~ 308 (558)
+.++...+.... .......+...-..++..+-...+.++.+.|+.+....+...+..+|...-...+.++.+.+ +..
T Consensus 112 ~~aLG~~~~~~~~~~~~a~~~l~~~~~D~~~~VR~~a~~aLg~~~~~~ai~~L~~~L~d~~~~VR~~A~~aLg~~~~~~~ 191 (280)
T PRK09687 112 INATGHRCKKNPLYSPKIVEQSQITAFDKSTNVRFAVAFALSVINDEAAIPLLINLLKDPNGDVRNWAAFALNSNKYDNP 191 (280)
T ss_pred HHHHhcccccccccchHHHHHHHHHhhCCCHHHHHHHHHHHhccCCHHHHHHHHHHhcCCCHHHHHHHHHHHhcCCCCCH
Confidence 444443321110 01111112111112233444445555555555333333333333444443333344444332 123
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 036003 309 KSILMFEEMMKAQVSPDEITFLGLLYACSHTGL 341 (558)
Q Consensus 309 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 341 (558)
.+...+..+.. .++...-...+.++.+.|+
T Consensus 192 ~~~~~L~~~L~---D~~~~VR~~A~~aLg~~~~ 221 (280)
T PRK09687 192 DIREAFVAMLQ---DKNEEIRIEAIIGLALRKD 221 (280)
T ss_pred HHHHHHHHHhc---CCChHHHHHHHHHHHccCC
Confidence 34444444442 2344444445555555555
|
|
| >PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=88.58 E-value=1.2 Score=25.68 Aligned_cols=27 Identities=15% Similarity=0.284 Sum_probs=17.9
Q ss_pred hHHHHHHHHHHCCChHHHHHHHHHHHH
Q 036003 293 AWSAMIVAYATHGQGHKSILMFEEMMK 319 (558)
Q Consensus 293 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 319 (558)
+|..+..+|...|++++|+..|++.++
T Consensus 3 ~~~~~g~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF00515_consen 3 AYYNLGNAYFQLGDYEEALEYYQRALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHH
Confidence 466666677777777777777777665
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A .... |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=88.47 E-value=0.84 Score=42.33 Aligned_cols=95 Identities=11% Similarity=-0.023 Sum_probs=67.8
Q ss_pred HHHHHHccCChHHHHHHHHHchhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcC
Q 036003 332 LLYACSHTGLVDEGWNYFYSMRDKYGIVP-GIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIK-STPILWRTLLSSCSSHN 408 (558)
Q Consensus 332 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g 408 (558)
-.+-|.+.|++++|+.+|..... +.| +..++..-..+|.+..++..|+.-.... ... .-...|..-+.+-...|
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia---~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg 179 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIA---VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLG 179 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhc---cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHh
Confidence 35568889999999999988774 344 7888888888999999988777655554 111 11233444444445567
Q ss_pred CHHHHHHHHHHHHccCCCCcc
Q 036003 409 NLGLAKQVIERIFELDDSHGG 429 (558)
Q Consensus 409 ~~~~a~~~~~~~~~~~~~~~~ 429 (558)
+..+|.+-++.++++.|.+..
T Consensus 180 ~~~EAKkD~E~vL~LEP~~~E 200 (536)
T KOG4648|consen 180 NNMEAKKDCETVLALEPKNIE 200 (536)
T ss_pred hHHHHHHhHHHHHhhCcccHH
Confidence 888888888999999998543
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=88.17 E-value=1.3 Score=27.60 Aligned_cols=26 Identities=23% Similarity=0.447 Sum_probs=12.3
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHH
Q 036003 294 WSAMIVAYATHGQGHKSILMFEEMMK 319 (558)
Q Consensus 294 ~~~li~~~~~~~~~~~a~~~~~~m~~ 319 (558)
|..+...|...|++++|.++|++..+
T Consensus 4 ~~~la~~~~~~G~~~~A~~~~~~~l~ 29 (44)
T PF13428_consen 4 WLALARAYRRLGQPDEAERLLRRALA 29 (44)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34444444444444444444444444
|
|
| >TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK | Back alignment and domain information |
|---|
Probab=88.09 E-value=3.5 Score=33.60 Aligned_cols=68 Identities=12% Similarity=0.132 Sum_probs=31.3
Q ss_pred hcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCC
Q 036003 374 RAGRLDEAYRFIDEL-PIKS---TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGR 443 (558)
Q Consensus 374 ~~g~~~~A~~~~~~~-~~~~---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 443 (558)
..++.+++..+++.+ -.+| ...++.. ..+...|++++|.++|++..+..+..+..-..+..++.-.|+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg--~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDG--WLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHH--HHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 355566666665555 1222 2222222 223455666666666666655554433333333333333333
|
This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia. |
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=87.93 E-value=8.2 Score=33.11 Aligned_cols=93 Identities=14% Similarity=0.046 Sum_probs=53.8
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCCC------CHHhHHHHHHHHHHCCChHHHHHHHHHHHHC---CCCCCHHHHHHH
Q 036003 262 VNTALIDMHAKCGRLDDAVSVFDNMSGK------DTQAWSAMIVAYATHGQGHKSILMFEEMMKA---QVSPDEITFLGL 332 (558)
Q Consensus 262 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~~~~~~~l 332 (558)
.+..+...|++.|+.+.|.+.|.++.+. -...+-.+|......+++..+...+.+.... |-.++...--..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 3455666777777777777777776644 1234556666777777777777776665542 222222111111
Q ss_pred HH--HHHccCChHHHHHHHHHchh
Q 036003 333 LY--ACSHTGLVDEGWNYFYSMRD 354 (558)
Q Consensus 333 l~--~~~~~g~~~~a~~~~~~~~~ 354 (558)
.. .+...+++..|-+.|-....
T Consensus 118 ~~gL~~l~~r~f~~AA~~fl~~~~ 141 (177)
T PF10602_consen 118 YEGLANLAQRDFKEAAELFLDSLS 141 (177)
T ss_pred HHHHHHHHhchHHHHHHHHHccCc
Confidence 11 23456788888888777654
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=87.91 E-value=15 Score=37.41 Aligned_cols=150 Identities=14% Similarity=0.053 Sum_probs=100.9
Q ss_pred HhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCChHHHHHHH
Q 036003 271 AKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDE-ITFLGLLYACSHTGLVDEGWNYF 349 (558)
Q Consensus 271 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~ 349 (558)
.-.|+++.|..++..+.++ .-+.++.-+-+.|..++|+++ .+|. .-|. ...+.|+++.|.++.
T Consensus 597 vmrrd~~~a~~vLp~I~k~---~rt~va~Fle~~g~~e~AL~~---------s~D~d~rFe----lal~lgrl~iA~~la 660 (794)
T KOG0276|consen 597 VLRRDLEVADGVLPTIPKE---IRTKVAHFLESQGMKEQALEL---------STDPDQRFE----LALKLGRLDIAFDLA 660 (794)
T ss_pred hhhccccccccccccCchh---hhhhHHhHhhhccchHhhhhc---------CCChhhhhh----hhhhcCcHHHHHHHH
Confidence 3457777777777666633 234455556666766666653 3333 2222 234678888888876
Q ss_pred HHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcc
Q 036003 350 YSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGG 429 (558)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 429 (558)
.+.. +..-|..|.++....|++..|.+.|.+.. -|..|+-.+...|+.+....+-....+.+..|
T Consensus 661 ~e~~-------s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~------d~~~LlLl~t~~g~~~~l~~la~~~~~~g~~N-- 725 (794)
T KOG0276|consen 661 VEAN-------SEVKWRQLGDAALSAGELPLASECFLRAR------DLGSLLLLYTSSGNAEGLAVLASLAKKQGKNN-- 725 (794)
T ss_pred Hhhc-------chHHHHHHHHHHhhcccchhHHHHHHhhc------chhhhhhhhhhcCChhHHHHHHHHHHhhcccc--
Confidence 6553 45678899999999999999999988763 24456666777787776666666666666554
Q ss_pred cHHhHHHHHHhcCChHHHHHHHHHH
Q 036003 430 DYVILSNLCARAGRWEDVDYLRKLM 454 (558)
Q Consensus 430 ~~~~l~~~~~~~g~~~~A~~~~~~m 454 (558)
.-..+|...|+++++.+++..-
T Consensus 726 ---~AF~~~~l~g~~~~C~~lLi~t 747 (794)
T KOG0276|consen 726 ---LAFLAYFLSGDYEECLELLIST 747 (794)
T ss_pred ---hHHHHHHHcCCHHHHHHHHHhc
Confidence 3344678889999999887643
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.65 E-value=27 Score=36.38 Aligned_cols=82 Identities=13% Similarity=0.086 Sum_probs=35.9
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHH----hcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHH
Q 036003 377 RLDEAYRFIDELPIKSTPILWRTLLSSCS----SHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRK 452 (558)
Q Consensus 377 ~~~~A~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 452 (558)
+...|.++|...........+..+...|. ...+...|..+++++.+.+.+....-...+..+.. ++++.+.-.+.
T Consensus 343 d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~~~A~~~~~~~~~~g~-~~~~~~~~~~~ 421 (552)
T KOG1550|consen 343 DYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGNPSAAYLLGAFYEYGV-GRYDTALALYL 421 (552)
T ss_pred cHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccChhhHHHHHHHHHHcc-ccccHHHHHHH
Confidence 44566666665532333333333322222 22355666666666666663221111122222222 55555555544
Q ss_pred HHHhCCC
Q 036003 453 LMKDRGV 459 (558)
Q Consensus 453 ~m~~~g~ 459 (558)
.+.+.|.
T Consensus 422 ~~a~~g~ 428 (552)
T KOG1550|consen 422 YLAELGY 428 (552)
T ss_pred HHHHhhh
Confidence 4444443
|
|
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=87.62 E-value=24 Score=32.92 Aligned_cols=60 Identities=13% Similarity=-0.026 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHCCChH---HHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHchh
Q 036003 293 AWSAMIVAYATHGQGH---KSILMFEEMMKAQVSPD-EITFLGLLYACSHTGLVDEGWNYFYSMRD 354 (558)
Q Consensus 293 ~~~~li~~~~~~~~~~---~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 354 (558)
++..++.+|...+..+ +|..+++.+.... |+ ...+..-+..+.+.++.+.+.+++.+|..
T Consensus 86 iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~--~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~ 149 (278)
T PF08631_consen 86 ILRLLANAYLEWDTYESVEKALNALRLLESEY--GNKPEVFLLKLEILLKSFDEEEYEEILMRMIR 149 (278)
T ss_pred HHHHHHHHHHcCCChHHHHHHHHHHHHHHHhC--CCCcHHHHHHHHHHhccCChhHHHHHHHHHHH
Confidence 3445555555555433 4444555554322 22 23343445555556677777777777765
|
It is also involved in sporulation []. |
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=87.54 E-value=39 Score=35.23 Aligned_cols=270 Identities=9% Similarity=0.033 Sum_probs=136.4
Q ss_pred hHHHHHHHhccCC-CCcchHHHHHHH-----HHHCCCccHHHHHHHHHHH-------CCCCCCHHHHHHHHHHHhccC--
Q 036003 175 VEAARRIFENISE-PCVVSYNAIITA-----YARSSRPNEALSLFRELQE-------RNLKPTDVTMLSALSSCALLG-- 239 (558)
Q Consensus 175 ~~~A~~~~~~~~~-~~~~~~~~li~~-----~~~~g~~~~A~~~~~~m~~-------~~~~p~~~~~~~ll~~~~~~~-- 239 (558)
...|...++...+ .+...-..+..+ +....+.+.|+..|....+ .| .......+..+|.+..
T Consensus 228 ~~~a~~~~~~~a~~g~~~a~~~~g~~y~~G~~g~~~d~e~a~~~l~~aa~~~~~~a~~~---~~~a~~~lg~~Y~~g~~~ 304 (552)
T KOG1550|consen 228 LSEAFKYYREAAKLGHSEAQYALGICYLAGTYGVTQDLESAIEYLKLAAESFKKAATKG---LPPAQYGLGRLYLQGLGV 304 (552)
T ss_pred hhHHHHHHHHHHhhcchHHHHHHHHHHhhccccccccHHHHHHHHHHHHHHHHHHHhhc---CCccccHHHHHHhcCCCC
Confidence 3456666666554 333333323222 3344677777777777655 33 2223444455554432
Q ss_pred ---ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc---CCHHHHHHHHhccCCC-CHHhHHHHHHHHHH----CCChH
Q 036003 240 ---SLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKC---GRLDDAVSVFDNMSGK-DTQAWSAMIVAYAT----HGQGH 308 (558)
Q Consensus 240 ---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~ 308 (558)
+.+.|..++...-+.|. |+.... +...|... .+...|.++|...... ...++-.+..+|.. ..+..
T Consensus 305 ~~~d~~~A~~~~~~aA~~g~-~~a~~~--lg~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~ 381 (552)
T KOG1550|consen 305 EKIDYEKALKLYTKAAELGN-PDAQYL--LGVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLE 381 (552)
T ss_pred ccccHHHHHHHHHHHHhcCC-chHHHH--HHHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHH
Confidence 55667777777777663 333322 22222222 3466777777766544 33333333333322 24577
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHH---hh----cCCHHHH
Q 036003 309 KSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLL---GR----AGRLDEA 381 (558)
Q Consensus 309 ~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~---~~----~g~~~~A 381 (558)
.|..++.+..+.| .|...--...+..+.. +.++.+...+..+..- +...-...-..+.... .. ..+...+
T Consensus 382 ~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~-g~~~~q~~a~~l~~~~~~~~~~~~~~~~~~~~ 458 (552)
T KOG1550|consen 382 LAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAEL-GYEVAQSNAAYLLDQSEEDLFSRGVISTLERA 458 (552)
T ss_pred HHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHh-hhhHHhhHHHHHHHhccccccccccccchhHH
Confidence 7888888887777 3343333333334444 6666665555555442 3221111111111111 11 2245566
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhc----CCHHHHHHHHHHHHccCCCCcccHHhHHHHHHh----cCChHHHHHHHHH
Q 036003 382 YRFIDELPIKSTPILWRTLLSSCSSH----NNLGLAKQVIERIFELDDSHGGDYVILSNLCAR----AGRWEDVDYLRKL 453 (558)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 453 (558)
..++.+.....+......+...|... .+++.|...+..+...+ ......+..++.. .. +..|.+++++
T Consensus 459 ~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~-~~~a~~~~~~ 534 (552)
T KOG1550|consen 459 FSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKV-LHLAKRYYDQ 534 (552)
T ss_pred HHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcch-hHHHHHHHHH
Confidence 66666664455555555565555433 35777777777776666 3444445544432 22 5677777776
Q ss_pred HHhC
Q 036003 454 MKDR 457 (558)
Q Consensus 454 m~~~ 457 (558)
....
T Consensus 535 ~~~~ 538 (552)
T KOG1550|consen 535 ASEE 538 (552)
T ss_pred HHhc
Confidence 6553
|
|
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=87.50 E-value=42 Score=35.51 Aligned_cols=43 Identities=19% Similarity=0.276 Sum_probs=28.7
Q ss_pred hHHHHHHHHhhcCCCCCCHHHHHHHHccCC---CCCcccHHHHHHHHhcC
Q 036003 54 NVLTKLINFCTQNPTTSSMEHAHLLFDRIP---EPDIVLFNTMARGYSRS 100 (558)
Q Consensus 54 ~~~~~li~~~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~ 100 (558)
.+|- +|-.|.|+ |.+++|.++..... +.....+-..+..|..+
T Consensus 113 p~Wa-~Iyy~LR~---G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s 158 (613)
T PF04097_consen 113 PIWA-LIYYCLRC---GDYDEALEVANENRNQFQKIERSFPTYLKAYASS 158 (613)
T ss_dssp EHHH-HHHHHHTT---T-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTT
T ss_pred ccHH-HHHHHHhc---CCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhC
Confidence 3444 67788899 99999999993332 24445666777777665
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=87.07 E-value=1.2 Score=25.30 Aligned_cols=27 Identities=11% Similarity=0.082 Sum_probs=14.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHccCCC
Q 036003 400 LLSSCSSHNNLGLAKQVIERIFELDDS 426 (558)
Q Consensus 400 l~~~~~~~g~~~~a~~~~~~~~~~~~~ 426 (558)
+..++.+.|++++|.+.|+++++..|+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 344445555555555555555555443
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=87.03 E-value=17 Score=30.36 Aligned_cols=86 Identities=17% Similarity=0.119 Sum_probs=45.9
Q ss_pred HccCChHHHHHHHHHchhhcCCCCChhHHH-HHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 036003 337 SHTGLVDEGWNYFYSMRDKYGIVPGIKHYG-CMVDLLGRAGRLDEAYRFIDEL-PIKSTPILWRTLLSSCSSHNNLGLAK 414 (558)
Q Consensus 337 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-~li~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~ 414 (558)
.+.++.+++..++..+. -+.|...... .-...+...|++.+|..+|+++ ...|....-..|+..|....+-..-.
T Consensus 21 l~~~~~~D~e~lL~ALr---vLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~Wr 97 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALR---VLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSWR 97 (160)
T ss_pred HccCChHHHHHHHHHHH---HhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHHH
Confidence 45567777777777765 3344432222 2233456677777777777777 22333344445555555444444444
Q ss_pred HHHHHHHccCC
Q 036003 415 QVIERIFELDD 425 (558)
Q Consensus 415 ~~~~~~~~~~~ 425 (558)
..-+++++.++
T Consensus 98 ~~A~evle~~~ 108 (160)
T PF09613_consen 98 RYADEVLESGA 108 (160)
T ss_pred HHHHHHHhcCC
Confidence 44445555443
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=86.92 E-value=3.4 Score=38.09 Aligned_cols=101 Identities=16% Similarity=0.317 Sum_probs=67.0
Q ss_pred hCCCCChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCC-C------CcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCC
Q 036003 47 THLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE-P------DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLL 119 (558)
Q Consensus 47 ~g~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~-~------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~ 119 (558)
.|...+..+...++..-... .+++.+...+-++.. | +... ...++.+.+ -++++++.++..=...|+-
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~---~~idd~~~~LyKlRhs~~a~~~~~~~~-~~~irlllk-y~pq~~i~~l~npIqYGiF 132 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSR---EEIDDAEYYLYKLRHSPNAWYLRNWTI-HTWIRLLLK-YDPQKAIYTLVNPIQYGIF 132 (418)
T ss_pred cCCCcceeehhhhhhccccc---cchhHHHHHHHHHhcCcchhhhccccH-HHHHHHHHc-cChHHHHHHHhCcchhccc
Confidence 45556666666666666655 778887777766543 2 1111 122333332 2677888888777778888
Q ss_pred CCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhC
Q 036003 120 PDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLG 154 (558)
Q Consensus 120 p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g 154 (558)
||.++++.+|..+.+. ++..+|.++.-.|+...
T Consensus 133 ~dqf~~c~l~D~flk~--~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 133 PDQFTFCLLMDSFLKK--ENYKDAASVVTEVMMQE 165 (418)
T ss_pred cchhhHHHHHHHHHhc--ccHHHHHHHHHHHHHHH
Confidence 8888888888888888 78888888777776654
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=86.57 E-value=5.5 Score=30.01 Aligned_cols=61 Identities=13% Similarity=0.171 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHH
Q 036003 308 HKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVD 370 (558)
Q Consensus 308 ~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 370 (558)
-+..+-++.+....+.|+.....+.+.+|.+.+++..|.++|+.++.+.+.. ...|..+++
T Consensus 27 we~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~--~~~Y~~~lq 87 (108)
T PF02284_consen 27 WELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNK--KEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT---TTHHHHHHH
T ss_pred HHHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCh--HHHHHHHHH
Confidence 3566777777778889999999999999999999999999999998865533 337777664
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF13431 TPR_17: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=86.15 E-value=1.4 Score=25.65 Aligned_cols=32 Identities=34% Similarity=0.292 Sum_probs=21.7
Q ss_pred HHHHHHhCCCChHHHHHHHHHHHHhCCChHHHH
Q 036003 147 HCFAIKLGLNSNLYVCTTLINLYAECSDVEAAR 179 (558)
Q Consensus 147 ~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~ 179 (558)
|++.++.. +-+...|+.+...|...|++++|+
T Consensus 2 y~kAie~~-P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 2 YKKAIELN-PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred hHHHHHHC-CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 34444443 456777888888888888887775
|
|
| >KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis] | Back alignment and domain information |
|---|
Probab=86.05 E-value=12 Score=30.06 Aligned_cols=62 Identities=6% Similarity=-0.060 Sum_probs=33.4
Q ss_pred HHHHHHHHHHHhcC---CHHHHHHHHHHHHccC-CCC-cccHHhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 395 ILWRTLLSSCSSHN---NLGLAKQVIERIFELD-DSH-GGDYVILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 395 ~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~-~~~-~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
.+--.+..++.+.. +..+.+.+++...+.. |.. -.....|.-++.+.|+|+.+.++.+.+.+
T Consensus 33 ~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~ 99 (149)
T KOG3364|consen 33 QSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLE 99 (149)
T ss_pred HHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHh
Confidence 33334444554443 3455666666666522 222 12344455566677777777777766655
|
|
| >PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional | Back alignment and domain information |
|---|
Probab=85.63 E-value=16 Score=35.97 Aligned_cols=125 Identities=12% Similarity=0.045 Sum_probs=64.1
Q ss_pred ccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 036003 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL--PIKSTPILWRTLLSSCSSHNNLGLAKQ 415 (558)
Q Consensus 338 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~ 415 (558)
..|++-.|-+-+......+.-.|+.... ....+...|+++.+...+... .+.....+..+++......|++++|..
T Consensus 301 ~~gd~~aas~~~~~~lr~~~~~p~~i~l--~~~i~~~lg~ye~~~~~~s~~~~~~~s~~~~~~~~~r~~~~l~r~~~a~s 378 (831)
T PRK15180 301 ADGDIIAASQQLFAALRNQQQDPVLIQL--RSVIFSHLGYYEQAYQDISDVEKIIGTTDSTLRCRLRSLHGLARWREALS 378 (831)
T ss_pred hccCHHHHHHHHHHHHHhCCCCchhhHH--HHHHHHHhhhHHHHHHHhhchhhhhcCCchHHHHHHHhhhchhhHHHHHH
Confidence 3455555444333333322333333222 223345566667666666555 122334556666666666777777777
Q ss_pred HHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhCCCccCCc
Q 036003 416 VIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPG 464 (558)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~ 464 (558)
..+-|+...-.++.....-...-...|-++++.-.|+++...+.+-+.|
T Consensus 379 ~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g 427 (831)
T PRK15180 379 TAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSG 427 (831)
T ss_pred HHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhccc
Confidence 7766666554444433333333344456677777777665544433333
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=85.62 E-value=0.65 Score=38.31 Aligned_cols=85 Identities=14% Similarity=0.119 Sum_probs=42.8
Q ss_pred HHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC
Q 036003 93 MARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAEC 172 (558)
Q Consensus 93 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 172 (558)
+++.+.+.+.+.....+++.+...+..-+....+.++..|++. +..+...++++. .+..-...++..|.+.
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~--~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~ 83 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKY--DPYEKLLEFLKT-------SNNYDLDKALRLCEKH 83 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCT--TTCCHHHHTTTS-------SSSS-CTHHHHHHHTT
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhc--CCchHHHHHccc-------ccccCHHHHHHHHHhc
Confidence 3455555566666666666666554444455556666666655 444444444431 1112223455555555
Q ss_pred CChHHHHHHHhccC
Q 036003 173 SDVEAARRIFENIS 186 (558)
Q Consensus 173 g~~~~A~~~~~~~~ 186 (558)
|.+++|.-++.++.
T Consensus 84 ~l~~~a~~Ly~~~~ 97 (143)
T PF00637_consen 84 GLYEEAVYLYSKLG 97 (143)
T ss_dssp TSHHHHHHHHHCCT
T ss_pred chHHHHHHHHHHcc
Confidence 55555555555543
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=85.44 E-value=6.9 Score=29.17 Aligned_cols=61 Identities=20% Similarity=0.186 Sum_probs=42.6
Q ss_pred ccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 036003 206 PNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALI 267 (558)
Q Consensus 206 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 267 (558)
.-++.+-++.+....+.|++....+.+++|.+.+++..|.++++-++... ..+...|..++
T Consensus 23 ~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~-~~~~~~y~~~l 83 (103)
T cd00923 23 GWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKC-GAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHc-cCchhhHHHHH
Confidence 33556666677777788888888888888888888888888888776432 11333454443
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ] | Back alignment and domain information |
|---|
Probab=85.37 E-value=2.3 Score=24.32 Aligned_cols=27 Identities=30% Similarity=0.464 Sum_probs=16.2
Q ss_pred hHHHHHHHHHHCCChHHHHHHHHHHHH
Q 036003 293 AWSAMIVAYATHGQGHKSILMFEEMMK 319 (558)
Q Consensus 293 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 319 (558)
.|..+...+...|++++|++.|++..+
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~ 29 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALE 29 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 345556666666666666666666655
|
It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A .... |
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=85.23 E-value=21 Score=29.80 Aligned_cols=48 Identities=15% Similarity=0.017 Sum_probs=22.6
Q ss_pred ccHHHHHHHHHHHHHhCCCChH-HHHHHHHHHHHhCCChHHHHHHHhccCC
Q 036003 138 EALEEGKQLHCFAIKLGLNSNL-YVCTTLINLYAECSDVEAARRIFENISE 187 (558)
Q Consensus 138 ~~~~~a~~~~~~~~~~g~~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~ 187 (558)
++.+.+..+++-+.-. .|.. ..-..-...+.+.|++.+|+.+|+.+..
T Consensus 24 ~~~~D~e~lL~ALrvL--RP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~ 72 (160)
T PF09613_consen 24 GDPDDAEALLDALRVL--RPEFPELDLFDGWLHIVRGDWDDALRLLRELEE 72 (160)
T ss_pred CChHHHHHHHHHHHHh--CCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhc
Confidence 4555555555555443 2221 1111222344555666666666666544
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=85.14 E-value=2 Score=26.05 Aligned_cols=28 Identities=14% Similarity=0.192 Sum_probs=16.4
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 036003 395 ILWRTLLSSCSSHNNLGLAKQVIERIFE 422 (558)
Q Consensus 395 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 422 (558)
.+++.|...|...|++++|..+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 3455566666666666666666666554
|
|
| >KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=84.92 E-value=30 Score=31.40 Aligned_cols=269 Identities=13% Similarity=0.177 Sum_probs=130.7
Q ss_pred CCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChH---HHHHHHHHHHHhCCChHHHHHHHhccCCCCcchH
Q 036003 117 GLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNL---YVCTTLINLYAECSDVEAARRIFENISEPCVVSY 193 (558)
Q Consensus 117 g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~ 193 (558)
+-.||...-|..-.+-.-. ...+++|+.-|++.++..-.... .....++..+.+.|++++....+.++..
T Consensus 21 ~sEpdVDlENQYYnsK~l~-e~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLT------ 93 (440)
T KOG1464|consen 21 NSEPDVDLENQYYNSKGLK-EDEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLT------ 93 (440)
T ss_pred CCCCCcchHhhhhcccccc-ccCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHH------
Confidence 4556665544433322211 15777888888887765322222 2334455666667777666666665431
Q ss_pred HHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHH----HHh-CCCCchhHHHHHHH
Q 036003 194 NAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI----KKY-GLDKYVKVNTALID 268 (558)
Q Consensus 194 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~----~~~-~~~~~~~~~~~l~~ 268 (558)
.|....-.+.. ....+.++...+.+.+.+.-..+++.- .+. +-...-.+-..|..
T Consensus 94 --YIkSAVTrNyS------------------EKsIN~IlDyiStS~~m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgk 153 (440)
T KOG1464|consen 94 --YIKSAVTRNYS------------------EKSINSILDYISTSKNMDLLQEFYETTLDALKDAKNERLWFKTNTKLGK 153 (440)
T ss_pred --HHHHHHhcccc------------------HHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHhhhcceeeeeccchHhh
Confidence 11111111111 122233333322233322222222211 110 11122223345667
Q ss_pred HHHhcCCHHHHHHHHhccCCC---------------CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCC-CCCCHHHHHHH
Q 036003 269 MHAKCGRLDDAVSVFDNMSGK---------------DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ-VSPDEITFLGL 332 (558)
Q Consensus 269 ~~~~~g~~~~A~~~~~~~~~~---------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~l 332 (558)
.|...|.+.+..++++++... -...|..-|+.|....+-.+...+|++...-. .-|-+.. ..+
T Consensus 154 l~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIPHPlI-mGv 232 (440)
T KOG1464|consen 154 LYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIPHPLI-MGV 232 (440)
T ss_pred hheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCCchHH-HhH
Confidence 777777777777777665311 12356667788888888777777888765422 2333333 344
Q ss_pred HHHH-----HccCChHHHHHHHHHchhhc---CCCCC--hhHHHHHHHHHhhcCCHHHHHHHHHh--C-CC--CCCHHHH
Q 036003 333 LYAC-----SHTGLVDEGWNYFYSMRDKY---GIVPG--IKHYGCMVDLLGRAGRLDEAYRFIDE--L-PI--KSTPILW 397 (558)
Q Consensus 333 l~~~-----~~~g~~~~a~~~~~~~~~~~---~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~--~-~~--~~~~~~~ 397 (558)
|+-| .+.|.+++|-.-|-+.-+.+ |-+.. .--|..|.+++.+.|-- =|+. . |. .|.....
T Consensus 233 IRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~iN-----PFDsQEAKPyKNdPEIlAM 307 (440)
T KOG1464|consen 233 IRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGIN-----PFDSQEAKPYKNDPEILAM 307 (440)
T ss_pred HHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCCC-----CCcccccCCCCCCHHHHHH
Confidence 4444 45678877754433333322 22221 12355566666665521 1111 1 22 3445667
Q ss_pred HHHHHHHHhcCCHHHHHHHHHH
Q 036003 398 RTLLSSCSSHNNLGLAKQVIER 419 (558)
Q Consensus 398 ~~l~~~~~~~g~~~~a~~~~~~ 419 (558)
..|+.+|.. ++..+.+++++.
T Consensus 308 Tnlv~aYQ~-NdI~eFE~Il~~ 328 (440)
T KOG1464|consen 308 TNLVAAYQN-NDIIEFERILKS 328 (440)
T ss_pred HHHHHHHhc-ccHHHHHHHHHh
Confidence 788888864 355555554443
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=84.90 E-value=57 Score=34.58 Aligned_cols=197 Identities=16% Similarity=0.109 Sum_probs=109.4
Q ss_pred CCCCChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCCCCcccHHHHHHHHh-cCCCchHHHHHHHHhHHCCCCCCcc---
Q 036003 48 HLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYS-RSKTPIRAIFLFVELLNSGLLPDDY--- 123 (558)
Q Consensus 48 g~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~A~~~~~~m~~~g~~p~~~--- 123 (558)
.-+.+...|..||..-.+| ++.+.+-+.--++.++.++-.+...+. ...+++.|...+++.....-+++..
T Consensus 25 ~~~~~l~~Y~kLI~~ai~C-----L~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k 99 (608)
T PF10345_consen 25 KSEEQLKQYYKLIATAIKC-----LEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLK 99 (608)
T ss_pred CChhhHHHHHHHHHHHHHH-----HHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHH
Confidence 3445567788888877777 333333111111234556666666666 5678888888888775543232221
Q ss_pred --cHHHHHHHHHhcCcccHHHHHHHHHHHHHhC----CCChHHHHHHH-HHHHHhCCChHHHHHHHhccCC-------CC
Q 036003 124 --SFPSLLKACACVGAEALEEGKQLHCFAIKLG----LNSNLYVCTTL-INLYAECSDVEAARRIFENISE-------PC 189 (558)
Q Consensus 124 --~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g----~~~~~~~~~~l-l~~~~~~g~~~~A~~~~~~~~~-------~~ 189 (558)
.-..++..+.+. + ...|...+++.++.- ..+-...+..+ +..+...+|...|.+.++.+.. +-
T Consensus 100 ~~~~~ll~~i~~~~--~-~~~a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~ 176 (608)
T PF10345_consen 100 FRCQFLLARIYFKT--N-PKAALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPA 176 (608)
T ss_pred HHHHHHHHHHHHhc--C-HHHHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHH
Confidence 112334445444 3 333888887766542 22333444444 3344344788888888877753 22
Q ss_pred cchHHHHHHHH--HHCCCccHHHHHHHHHHHCCC---------CCCHHHHHHHHHHHh--ccCChHHHHHHHHHHH
Q 036003 190 VVSYNAIITAY--ARSSRPNEALSLFRELQERNL---------KPTDVTMLSALSSCA--LLGSLDLGKWIHEYIK 252 (558)
Q Consensus 190 ~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~~~---------~p~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~ 252 (558)
...+-.++.+. .+.+..+++++.++++..... .|-..+|..++..++ ..|+++.+...++++.
T Consensus 177 ~~v~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 177 VFVLASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 22333344443 345667778888777643221 234456666666554 5677777776666554
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown] | Back alignment and domain information |
|---|
Probab=84.52 E-value=47 Score=33.31 Aligned_cols=175 Identities=9% Similarity=0.066 Sum_probs=109.0
Q ss_pred CCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 036003 188 PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALI 267 (558)
Q Consensus 188 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 267 (558)
-|....-+++..+.++-++.-...+..+|..-| .+...|..++.+|... .-++-..+++++.+..+. |...-..|.
T Consensus 64 l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn-Dvv~~ReLa 139 (711)
T COG1747 64 LDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN-DVVIGRELA 139 (711)
T ss_pred ccchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch-hHHHHHHHH
Confidence 355566778888888888888888888888854 5777888888888887 566777888888877543 233334455
Q ss_pred HHHHhcCCHHHHHHHHhccCCC------CH---HhHHHHHHHHHHCCChHHHHHHHHHHHH-CCCCCCHHHHHHHHHHHH
Q 036003 268 DMHAKCGRLDDAVSVFDNMSGK------DT---QAWSAMIVAYATHGQGHKSILMFEEMMK-AQVSPDEITFLGLLYACS 337 (558)
Q Consensus 268 ~~~~~~g~~~~A~~~~~~~~~~------~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~-~g~~p~~~~~~~ll~~~~ 337 (558)
..|-+ ++.+.+..+|.++..+ +. ..|..+...- ..+.+..+.+..+... .|..--...+.-+-.-|.
T Consensus 140 ~~yEk-ik~sk~a~~f~Ka~yrfI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Ys 216 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGKALYRFIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKYS 216 (711)
T ss_pred HHHHH-hchhhHHHHHHHHHHHhcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHhc
Confidence 55555 7888888887776422 11 1344444321 2345556666555554 233333445555556667
Q ss_pred ccCChHHHHHHHHHchhhcCCCCChhHHHHHHHH
Q 036003 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDL 371 (558)
Q Consensus 338 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 371 (558)
...++++|.+++..+.+ .-..|...-..++.-
T Consensus 217 ~~eN~~eai~Ilk~il~--~d~k~~~ar~~~i~~ 248 (711)
T COG1747 217 ENENWTEAIRILKHILE--HDEKDVWARKEIIEN 248 (711)
T ss_pred cccCHHHHHHHHHHHhh--hcchhhhHHHHHHHH
Confidence 77777777777777765 223344444444443
|
|
| >COG2909 MalT ATP-dependent transcriptional regulator [Transcription] | Back alignment and domain information |
|---|
Probab=84.26 E-value=65 Score=34.73 Aligned_cols=215 Identities=14% Similarity=-0.015 Sum_probs=119.5
Q ss_pred hccCChHHHHHHHHHHHHhCCCCchh-------HHHHH-HHHHHhcCCHHHHHHHHhccCC--------CCHHhHHHHHH
Q 036003 236 ALLGSLDLGKWIHEYIKKYGLDKYVK-------VNTAL-IDMHAKCGRLDDAVSVFDNMSG--------KDTQAWSAMIV 299 (558)
Q Consensus 236 ~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~l-~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~ 299 (558)
....++++|..++.++...-..|+.. .++.+ .......|++++|.++-+.... .....+..+..
T Consensus 426 ~s~~r~~ea~~li~~l~~~l~~~~~~~~~~l~ae~~aL~a~val~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~ 505 (894)
T COG2909 426 ASQHRLAEAETLIARLEHFLKAPMHSRQGDLLAEFQALRAQVALNRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGE 505 (894)
T ss_pred HHccChHHHHHHHHHHHHHhCcCcccchhhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhH
Confidence 35678999999988886553333221 22222 1223446888888887766542 25667888888
Q ss_pred HHHHCCChHHHHHHHHHHHHCCCCCCHHHHH---HH--HHHHHccCC--hHHHHHHHHHchhhcCCC-----CChhHHHH
Q 036003 300 AYATHGQGHKSILMFEEMMKAQVSPDEITFL---GL--LYACSHTGL--VDEGWNYFYSMRDKYGIV-----PGIKHYGC 367 (558)
Q Consensus 300 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~---~l--l~~~~~~g~--~~~a~~~~~~~~~~~~~~-----~~~~~~~~ 367 (558)
+..-.|++++|..+.++..+.--.-+...|. .+ ...+...|. ..+....|......+... +-..++..
T Consensus 506 a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ 585 (894)
T COG2909 506 AAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEAQGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQ 585 (894)
T ss_pred HHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHH
Confidence 8889999999999888766532222332222 22 123445663 333334444443321111 12234445
Q ss_pred HHHHHhhcCCHHHHHHHH----HhC-CCCCCH--HH--HHHHHHHHHhcCCHHHHHHHHHHHHccCCCC-cc-cHH----
Q 036003 368 MVDLLGRAGRLDEAYRFI----DEL-PIKSTP--IL--WRTLLSSCSSHNNLGLAKQVIERIFELDDSH-GG-DYV---- 432 (558)
Q Consensus 368 li~~~~~~g~~~~A~~~~----~~~-~~~~~~--~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~-~~~---- 432 (558)
+..++.+ ++.+..-. .-. ...|.. .. +..|+......|+.++|...+.++......+ +. -|.
T Consensus 586 ll~~~~r---~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~ 662 (894)
T COG2909 586 LLRAWLR---LDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEFLRGDLDKALAQLDELERLLLNGQYHVDYLAAAY 662 (894)
T ss_pred HHHHHHH---HhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHH
Confidence 5555555 33332222 221 112222 22 2356778888999999999999987654222 22 122
Q ss_pred -hHHHHHHhcCChHHHHHHHHH
Q 036003 433 -ILSNLCARAGRWEDVDYLRKL 453 (558)
Q Consensus 433 -~l~~~~~~~g~~~~A~~~~~~ 453 (558)
.-.......|+.+++...+.+
T Consensus 663 ~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 663 KVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred HhhHHHhcccCCHHHHHHHHHh
Confidence 223334567888887776665
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=84.15 E-value=53 Score=33.60 Aligned_cols=339 Identities=13% Similarity=0.064 Sum_probs=195.8
Q ss_pred CCcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHH-HHhcCcccHHHHHHHHHHHHHhCCCChHHHHH
Q 036003 85 PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKA-CACVGAEALEEGKQLHCFAIKLGLNSNLYVCT 163 (558)
Q Consensus 85 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~ 163 (558)
-+...|..+|..--...+.+.+..++..++.. .|-..-|=.-..- =.+. |..+.+.++|++.+. |++.+...|.
T Consensus 43 ~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~kl--g~~~~s~~Vfergv~-aip~SvdlW~ 117 (577)
T KOG1258|consen 43 LDFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKL--GNAENSVKVFERGVQ-AIPLSVDLWL 117 (577)
T ss_pred hcccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHh--hhHHHHHHHHHHHHH-hhhhHHHHHH
Confidence 35566777776655555666777777777653 4554433322222 2334 888899999998886 5677777777
Q ss_pred HHHHHHH-hCCChHHHHHHHhccCC------CCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 036003 164 TLINLYA-ECSDVEAARRIFENISE------PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCA 236 (558)
Q Consensus 164 ~ll~~~~-~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 236 (558)
..+..+. ..|+.+...+.|+.... .+...|...|.--..++++.....+|++.++. |. ..|+..-.-|.
T Consensus 118 ~Y~~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei---P~-~~~~~~f~~f~ 193 (577)
T KOG1258|consen 118 SYLAFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI---PL-HQLNRHFDRFK 193 (577)
T ss_pred HHHHHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh---hh-hHhHHHHHHHH
Confidence 6665444 45777778888887764 45667888888888888999999999998874 22 22222222221
Q ss_pred ---cc------CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-CHHHHHHHHhccCCC-CH--HhH-------HH
Q 036003 237 ---LL------GSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCG-RLDDAVSVFDNMSGK-DT--QAW-------SA 296 (558)
Q Consensus 237 ---~~------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~-~~--~~~-------~~ 296 (558)
+. ...+++.++-....... .....+ ..+.-....+....+ +. ..- +.
T Consensus 194 ~~l~~~~~~~l~~~d~~~~l~~~~~~~~-------------~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~ 260 (577)
T KOG1258|consen 194 QLLNQNEEKILLSIDELIQLRSDVAERS-------------KITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSI 260 (577)
T ss_pred HHHhcCChhhhcCHHHHHHHhhhHHhhh-------------hcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHH
Confidence 11 12333333322222110 000001 111111111222111 00 001 11
Q ss_pred HHHHHHHCCChHHHHHHHHHHHHC---CCCC----CHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHH
Q 036003 297 MIVAYATHGQGHKSILMFEEMMKA---QVSP----DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMV 369 (558)
Q Consensus 297 li~~~~~~~~~~~a~~~~~~m~~~---g~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 369 (558)
.-..+-...........|+.-++. .++| +..+|..-+.--...|+.+...-+|++..- .+..-...|--.+
T Consensus 261 ~~~~~~~s~~~~~kr~~fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli--~cA~Y~efWiky~ 338 (577)
T KOG1258|consen 261 HEKVYQKSEEEEEKRWGFEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLI--PCALYDEFWIKYA 338 (577)
T ss_pred HHHHHHhhHhHHHHHHhhhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHh--HHhhhHHHHHHHH
Confidence 111222222233333344443332 1223 346788888888889999999999888875 3444455666666
Q ss_pred HHHhhcCCHHHHHHHHHhC-----CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCCh
Q 036003 370 DLLGRAGRLDEAYRFIDEL-----PIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRW 444 (558)
Q Consensus 370 ~~~~~~g~~~~A~~~~~~~-----~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 444 (558)
.-....|+.+-|..++... +..|....+.+.+ .-..|+++.|..+++++.+.-|.....-..-+....+.|+.
T Consensus 339 ~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e~pg~v~~~l~~~~~e~r~~~~ 416 (577)
T KOG1258|consen 339 RWMESSGDVSLANNVLARACKIHVKKTPIIHLLEARF--EESNGNFDDAKVILQRIESEYPGLVEVVLRKINWERRKGNL 416 (577)
T ss_pred HHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhhCCchhhhHHHHHhHHHHhcch
Confidence 6666778888888777665 3334433333332 34568999999999999877666655555666677888888
Q ss_pred HHHHH
Q 036003 445 EDVDY 449 (558)
Q Consensus 445 ~~A~~ 449 (558)
+.+..
T Consensus 417 ~~~~~ 421 (577)
T KOG1258|consen 417 EDANY 421 (577)
T ss_pred hhhhH
Confidence 88874
|
|
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=83.75 E-value=15 Score=27.42 Aligned_cols=63 Identities=14% Similarity=0.225 Sum_probs=49.2
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHH
Q 036003 306 QGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVD 370 (558)
Q Consensus 306 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 370 (558)
+.-++.+-++.+....+.|+.....+.+++|-+.+++..|.++|+.++.+.+. +...|..++.
T Consensus 22 D~we~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~--~~~~y~~~lq 84 (103)
T cd00923 22 DGWELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGA--HKEIYPYILQ 84 (103)
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccC--chhhHHHHHH
Confidence 45567777788888888999999999999999999999999999988865333 4456666654
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PRK10941 hypothetical protein; Provisional | Back alignment and domain information |
|---|
Probab=83.48 E-value=15 Score=33.98 Aligned_cols=62 Identities=13% Similarity=0.030 Sum_probs=55.2
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhC
Q 036003 396 LWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 396 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
..+.+-.+|.+.++++.|+++.+.++...|+++.-+.--+-.|.+.|.+..|..-++...+.
T Consensus 183 ml~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~ 244 (269)
T PRK10941 183 LLDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQ 244 (269)
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHh
Confidence 44567778899999999999999999999999988888899999999999999988887764
|
|
| >PRK09687 putative lyase; Provisional | Back alignment and domain information |
|---|
Probab=83.20 E-value=40 Score=31.49 Aligned_cols=138 Identities=11% Similarity=-0.037 Sum_probs=65.5
Q ss_pred CCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-ChHHHHHHHHHHHHhCCCCchhHHHHH
Q 036003 188 PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLG-SLDLGKWIHEYIKKYGLDKYVKVNTAL 266 (558)
Q Consensus 188 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l 266 (558)
++..+-...+.++.+.++ .+++..+-.+.+. +|...-...+.++.+.+ +-..+...+..+.. .++..+-...
T Consensus 140 ~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~d---~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~---D~~~~VR~~A 212 (280)
T PRK09687 140 KSTNVRFAVAFALSVIND-EAAIPLLINLLKD---PNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ---DKNEEIRIEA 212 (280)
T ss_pred CCHHHHHHHHHHHhccCC-HHHHHHHHHHhcC---CCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc---CCChHHHHHH
Confidence 333344444445544443 3444444444432 33333333334444332 12233333333332 3344555555
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036003 267 IDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337 (558)
Q Consensus 267 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 337 (558)
+.++.+.|+....-.+.+.+..++ ..-..+.++...|.. +|+..+.++.+. .||...-...+.+|.
T Consensus 213 ~~aLg~~~~~~av~~Li~~L~~~~--~~~~a~~ALg~ig~~-~a~p~L~~l~~~--~~d~~v~~~a~~a~~ 278 (280)
T PRK09687 213 IIGLALRKDKRVLSVLIKELKKGT--VGDLIIEAAGELGDK-TLLPVLDTLLYK--FDDNEIITKAIDKLK 278 (280)
T ss_pred HHHHHccCChhHHHHHHHHHcCCc--hHHHHHHHHHhcCCH-hHHHHHHHHHhh--CCChhHHHHHHHHHh
Confidence 666666666433333333333333 233566677777774 577777777763 346555555555543
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=83.13 E-value=10 Score=28.70 Aligned_cols=59 Identities=20% Similarity=0.190 Sum_probs=39.1
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 036003 208 EALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALI 267 (558)
Q Consensus 208 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 267 (558)
+..+-++.+....+.|++....+.+.+|.+.+++..|.++++-++...- .....|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~-~~~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG-NKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT-T-TTHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc-ChHHHHHHHH
Confidence 4556666677777888888888999999999999999998888876532 2222555544
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models | Back alignment and domain information |
|---|
Probab=82.80 E-value=1.5 Score=23.60 Aligned_cols=22 Identities=14% Similarity=0.185 Sum_probs=13.8
Q ss_pred HHhHHHHHHhcCChHHHHHHHH
Q 036003 431 YVILSNLCARAGRWEDVDYLRK 452 (558)
Q Consensus 431 ~~~l~~~~~~~g~~~~A~~~~~ 452 (558)
...+...+...|++++|..+++
T Consensus 4 ~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 4 RLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHcCCHHHHHHHHh
Confidence 4456666666666666666654
|
The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding |
| >smart00028 TPR Tetratricopeptide repeats | Back alignment and domain information |
|---|
Probab=82.39 E-value=3.2 Score=22.70 Aligned_cols=30 Identities=20% Similarity=0.149 Sum_probs=17.3
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHccCC
Q 036003 396 LWRTLLSSCSSHNNLGLAKQVIERIFELDD 425 (558)
Q Consensus 396 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 425 (558)
.|..+...+...|+++.|...+++.++..|
T Consensus 3 ~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~ 32 (34)
T smart00028 3 ALYNLGNAYLKLGDYDEALEYYEKALELDP 32 (34)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHccCC
Confidence 344455555666666666666666655544
|
Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism. |
| >TIGR02508 type_III_yscG type III secretion protein, YscG family | Back alignment and domain information |
|---|
Probab=82.14 E-value=19 Score=27.10 Aligned_cols=88 Identities=14% Similarity=0.089 Sum_probs=59.8
Q ss_pred ccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHHCCCccHHHHHHHHHH
Q 036003 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217 (558)
Q Consensus 138 ~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 217 (558)
..-++|..+-+.+...+-. ...+--+-+..+...|++++|..+.+....||...|-+|.. .+.|..+++..-+.+|.
T Consensus 19 HcHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla 95 (115)
T TIGR02508 19 HCHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLA 95 (115)
T ss_pred hHHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHH
Confidence 4566777777776654422 33333344556778899999999999888899888877654 46677777777777777
Q ss_pred HCCCCCCHHHHH
Q 036003 218 ERNLKPTDVTML 229 (558)
Q Consensus 218 ~~~~~p~~~~~~ 229 (558)
..| .|....|.
T Consensus 96 ~sg-~p~lq~Fa 106 (115)
T TIGR02508 96 ASG-DPRLQTFV 106 (115)
T ss_pred hCC-CHHHHHHH
Confidence 776 45544443
|
YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc. |
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.55 E-value=6.6 Score=34.32 Aligned_cols=73 Identities=12% Similarity=-0.006 Sum_probs=49.2
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCc---ccHHhHHH
Q 036003 364 HYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHG---GDYVILSN 436 (558)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~ 436 (558)
+.+..++.+.+.+++++|+...++- +.+| |..+-..+++.++-.|++++|..-++-+-++.|... ..|..++.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 3445567777888888888777654 4455 445556677888888888888888887777776542 34444444
|
|
| >PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=81.43 E-value=0.72 Score=38.02 Aligned_cols=83 Identities=10% Similarity=0.114 Sum_probs=45.4
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHH
Q 036003 231 ALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKS 310 (558)
Q Consensus 231 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 310 (558)
++..+.+.+..+....+++.+...+...+....+.++..|++.++.++..++++.... .-...++..+.+.|.++++
T Consensus 13 vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~a 89 (143)
T PF00637_consen 13 VISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEEA 89 (143)
T ss_dssp CHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHHH
Confidence 3445555566666666666666655555566677777777777666666666663222 2223344444455555554
Q ss_pred HHHHHH
Q 036003 311 ILMFEE 316 (558)
Q Consensus 311 ~~~~~~ 316 (558)
.-++.+
T Consensus 90 ~~Ly~~ 95 (143)
T PF00637_consen 90 VYLYSK 95 (143)
T ss_dssp HHHHHC
T ss_pred HHHHHH
Confidence 444443
|
These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L. |
| >KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=81.37 E-value=4.7 Score=37.65 Aligned_cols=86 Identities=13% Similarity=0.084 Sum_probs=60.5
Q ss_pred HHHHHHHCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhc
Q 036003 297 MIVAYATHGQGHKSILMFEEMMKAQVSP-DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRA 375 (558)
Q Consensus 297 li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 375 (558)
-..-|.++|.+++|+..|..... +.| |.+++..-..+|.+...+..|+.-...... .-...+.+|.+.
T Consensus 103 ~GN~yFKQgKy~EAIDCYs~~ia--~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~Aia---------Ld~~Y~KAYSRR 171 (536)
T KOG4648|consen 103 RGNTYFKQGKYEEAIDCYSTAIA--VYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIA---------LDKLYVKAYSRR 171 (536)
T ss_pred hhhhhhhccchhHHHHHhhhhhc--cCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHH---------hhHHHHHHHHHH
Confidence 35679999999999999999877 566 889999999999999999888776655543 112345556555
Q ss_pred -------CCHHHHHHHHHhC-CCCCC
Q 036003 376 -------GRLDEAYRFIDEL-PIKST 393 (558)
Q Consensus 376 -------g~~~~A~~~~~~~-~~~~~ 393 (558)
|...+|.+-++.. ...|+
T Consensus 172 ~~AR~~Lg~~~EAKkD~E~vL~LEP~ 197 (536)
T KOG4648|consen 172 MQARESLGNNMEAKKDCETVLALEPK 197 (536)
T ss_pred HHHHHHHhhHHHHHHhHHHHHhhCcc
Confidence 4455554444443 44555
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=80.70 E-value=43 Score=30.98 Aligned_cols=53 Identities=13% Similarity=0.130 Sum_probs=26.7
Q ss_pred CChHHHHHHHHHHHHhCCChHHHHHHHhccCC-----CCcchHHHHHHHHHHCCCccH
Q 036003 156 NSNLYVCTTLINLYAECSDVEAARRIFENISE-----PCVVSYNAIITAYARSSRPNE 208 (558)
Q Consensus 156 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~g~~~~ 208 (558)
.++..+....+..+++.+++..-.++++.... .|...|..+|......|+..-
T Consensus 199 ~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~ 256 (292)
T PF13929_consen 199 SLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEV 256 (292)
T ss_pred CCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHH
Confidence 34444444555555555555555555544432 344455555555555555433
|
|
| >PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A | Back alignment and domain information |
|---|
Probab=80.65 E-value=4.6 Score=24.33 Aligned_cols=27 Identities=22% Similarity=0.441 Sum_probs=15.9
Q ss_pred hHHHHHHHHHHCCChHHHHHHHHHHHH
Q 036003 293 AWSAMIVAYATHGQGHKSILMFEEMMK 319 (558)
Q Consensus 293 ~~~~li~~~~~~~~~~~a~~~~~~m~~ 319 (558)
+++.+...|...|++++|..++++...
T Consensus 4 ~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 4 ALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 455666666666666666666665543
|
|
| >PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A | Back alignment and domain information |
|---|
Probab=80.41 E-value=2.1 Score=24.31 Aligned_cols=28 Identities=11% Similarity=0.125 Sum_probs=24.0
Q ss_pred cHHhHHHHHHhcCChHHHHHHHHHHHhC
Q 036003 430 DYVILSNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 430 ~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
++..++.+|.+.|++++|.+.|+++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 3567888999999999999999998763
|
|
| >COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=80.39 E-value=5.9 Score=36.24 Aligned_cols=60 Identities=17% Similarity=-0.016 Sum_probs=52.4
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHH
Q 036003 396 LWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMK 455 (558)
Q Consensus 396 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 455 (558)
+++.....|...|.+.+|.++.++++..+|-+...+-.|+..|...|+--+|.+-++++.
T Consensus 281 llgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 281 LLGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 344456788999999999999999999999999999999999999999888888777774
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=80.13 E-value=86 Score=33.27 Aligned_cols=125 Identities=14% Similarity=0.058 Sum_probs=66.4
Q ss_pred HHHHHHhhcCCCCCCHHHHHHHHccCCC----CCcccHH----HH-HHHHhcCCCchHHHHHHHHhHHCC---CCCCccc
Q 036003 57 TKLINFCTQNPTTSSMEHAHLLFDRIPE----PDIVLFN----TM-ARGYSRSKTPIRAIFLFVELLNSG---LLPDDYS 124 (558)
Q Consensus 57 ~~li~~~~~~~~~~~~~~A~~~~~~~~~----~~~~~~~----~l-i~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~~ 124 (558)
..++..|.+. +... |.+..++..+ .....|. -+ +..+...+++..|++.++.+.... ..|-...
T Consensus 104 ~ll~~i~~~~---~~~~-a~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v 179 (608)
T PF10345_consen 104 FLLARIYFKT---NPKA-ALKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFV 179 (608)
T ss_pred HHHHHHHHhc---CHHH-HHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHH
Confidence 3455666665 4443 7776666443 1111222 22 222223378888888887775532 2334455
Q ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHhCC---------CChHHHHHHHHHHH--HhCCChHHHHHHHhcc
Q 036003 125 FPSLLKACACVGAEALEEGKQLHCFAIKLGL---------NSNLYVCTTLINLY--AECSDVEAARRIFENI 185 (558)
Q Consensus 125 ~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~---------~~~~~~~~~ll~~~--~~~g~~~~A~~~~~~~ 185 (558)
+..++.+......+..+.+.+.++.+..... .|...++..+++.+ ...|+++.+...++++
T Consensus 180 ~~~l~~~~l~l~~~~~~d~~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~l 251 (608)
T PF10345_consen 180 LASLSEALLHLRRGSPDDVLELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQL 251 (608)
T ss_pred HHHHHHHHHHhcCCCchhHHHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555666555433556666666666644321 23555666666554 4566666666665554
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 59.8 bits (143), Expect = 2e-09
Identities = 28/231 (12%), Positives = 66/231 (28%), Gaps = 10/231 (4%)
Query: 207 NEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTAL 266
A L ++ P + + L SLD+ + + L + A
Sbjct: 74 QMAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAF 133
Query: 267 IDMHAKCGRLDDAVSVFDNMSGK-------DTQAWSAMIVAYATHGQGHKSILMFEEMMK 319
+L A + G+ ++A+++ +A G + + + +
Sbjct: 134 FKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKD 193
Query: 320 AQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLD 379
A ++PD +++ L + G+ ++ RA L
Sbjct: 194 AGLTPDLLSYAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLK 253
Query: 380 EAYRFIDEL---PIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH 427
++ P P+ LL + + ++ + L
Sbjct: 254 AVHKVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLF 304
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 52.1 bits (123), Expect = 5e-07
Identities = 23/176 (13%), Positives = 48/176 (27%), Gaps = 10/176 (5%)
Query: 120 PDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAAR 179
P + LL+ + +E+ + L+ + A
Sbjct: 90 PWEEQLARLLQEAPGKLSLDVEQAPSG--QHSQAQLSGQQQRLLAFFKCCLLTDQLPLAH 147
Query: 180 RIFE-------NISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSAL 232
+ + YNA++ +AR E + + +++ L P ++ +AL
Sbjct: 148 HLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAAL 207
Query: 233 SSCALLGSLDLGKW-IHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS 287
E + + GL L+ + L V S
Sbjct: 208 QCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFS 263
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 46.7 bits (109), Expect = 2e-05
Identities = 30/195 (15%), Positives = 60/195 (30%), Gaps = 11/195 (5%)
Query: 1 MATTPSPPITQSPPPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLI 60
MA Q+P L P S + + L L
Sbjct: 75 MAGCLEDCTRQAPESPWEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFF 134
Query: 61 NFCTQNPTTSSMEHAHLLFDRI-------PEPDIVLFNTMARGYSRSKTPIRAIFLFVEL 113
C T + AH L + ++N + G++R +++ +
Sbjct: 135 KCCLL---TDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMV 191
Query: 114 LNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECS 173
++GL PD S+ + L+ C + ++ + GL L++ +
Sbjct: 192 KDAGLTPDLLSYAAALQ-CMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRAT 250
Query: 174 DVEAARRIFENISEP 188
++A ++ S P
Sbjct: 251 VLKAVHKVKPTFSLP 265
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 57.6 bits (138), Expect = 8e-09
Identities = 71/488 (14%), Positives = 141/488 (28%), Gaps = 144/488 (29%)
Query: 46 KTHLQ----NDLNVLTKL------INFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMAR 95
KT + V K+ +N N + +E L +I + +
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN 222
Query: 96 GYSRS---KTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIK 152
R + +R + N L+ + A F +
Sbjct: 223 IKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNA-----------------FNLS 265
Query: 153 LGLNSNLYVCTTLI-NLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALS 211
C L+ + + +D +A + + ++ +T P+E S
Sbjct: 266 ---------CKILLTTRFKQVTDFLSA----ATTTHISLDHHSMTLT-------PDEVKS 305
Query: 212 LFR---ELQERNLKPTDVTMLSALSSCALLGSL---DLGKWIHEYIKKYGLDKYVKVNTA 265
L + + ++L P +V + +++ L W + K DK + +
Sbjct: 306 LLLKYLDCRPQDL-PREVLTTNPRR-LSIIAESIRDGLATW--DNWKHVNCDKLTTIIES 361
Query: 266 LIDMHAKCGRLD--------DAVSVFDNMSGKDTQ--------AWSAMIVAYATHGQGHK 309
+++ L+ D +SVF W +I +
Sbjct: 362 SLNV------LEPAEYRKMFDRLSVFP----PSAHIPTILLSLIWFDVIKS--------D 403
Query: 310 SILMFEEMMK---AQVSPDEITF----LGLLYACS-------HTGLVD--------EGW- 346
+++ ++ K + P E T + L H +VD +
Sbjct: 404 VMVVVNKLHKYSLVEKQPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDD 463
Query: 347 -------NYFYS-----MRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTP 394
YFYS ++ I+H + L R LD +RF+++ I+
Sbjct: 464 LIPPYLDQYFYSHIGHHLK-------NIEHPE-RMTLF-RMVFLD--FRFLEQ-KIRHDS 511
Query: 395 ILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYV-ILSNLCARAGRWEDVDYLR-K 452
W S ++ L K I + + L + + D LR
Sbjct: 512 TAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIA 571
Query: 453 LMKDRGVL 460
LM + +
Sbjct: 572 LMAEDEAI 579
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 52.5 bits (125), Expect = 3e-07
Identities = 45/283 (15%), Positives = 91/283 (32%), Gaps = 67/283 (23%)
Query: 14 PPKLCTNTPNALSLLPRCTSFRGLKQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSME 73
P ++ T P LS++ + T + + LT +I +
Sbjct: 319 PREVLTTNPRRLSIIAE------SIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYR 372
Query: 74 HAHLLFDRI---PE----PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLL---PDD- 122
+FDR+ P P I+L ++ + + +L L+ P +
Sbjct: 373 K---MFDRLSVFPPSAHIPTILL--SLIWFDVIKSDVMV---VVNKLHKYSLVEKQPKES 424
Query: 123 -YSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLY--AECSDVEAAR 179
S PS+ LE LH ++++ Y + D
Sbjct: 425 TISIPSIYLELKV----KLENEYALH---------------RSIVDHYNIPKTFD----- 460
Query: 180 RIFENISEPCVVSYNAIITAY-ARSSRPNEALSLFREL------QERNLKPTDVTMLSAL 232
+++ P + Y + ++ E ++LFR + E+ ++ ++
Sbjct: 461 --SDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASG 518
Query: 233 SSCALLGSLDL-GKWIHEYIKKYGLDKYVKVNTALIDMHAKCG 274
S L L +I + KY ++ V A++D K
Sbjct: 519 SILNTLQQLKFYKPYICDNDPKY--ERLVN---AILDFLPKIE 556
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 Length = 308 | Back alignment and structure |
|---|
Score = 40.8 bits (95), Expect = 7e-04
Identities = 23/149 (15%), Positives = 50/149 (33%), Gaps = 7/149 (4%)
Query: 141 EEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAY 200
+E ++ AI L N+ + + E I+ + + + Y
Sbjct: 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQY 140
Query: 201 ARSSRPNEALSLFRELQERNLKPTDVT----MLSALSSCALLGSLDLGKWIHE-YIKKYG 255
+ +R E + R + ++ + + +AL + I E +KKYG
Sbjct: 141 MKFARRAEGIKSGRMIFKKAREDARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG 200
Query: 256 LDKYVKVNTALIDMHAKCGRLDDAVSVFD 284
+ A ID + ++ +F+
Sbjct: 201 DI--PEYVLAYIDYLSHLNEDNNTRVLFE 227
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 558 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 100.0 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.97 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.93 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.91 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.91 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.9 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.87 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.87 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.86 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.84 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.83 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.82 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.82 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.81 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.81 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.8 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.79 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.77 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.77 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.76 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.75 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.75 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.74 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.73 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.73 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.72 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.71 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.7 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.68 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.67 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.66 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.64 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.63 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.62 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.62 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.6 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.58 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.57 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.57 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.55 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.55 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.54 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.54 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.54 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.54 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.54 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.53 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.53 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.53 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.53 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.52 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.52 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.51 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.5 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.49 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.48 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.48 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.46 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.44 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.43 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.4 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.4 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.39 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.39 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.39 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.36 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.36 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.34 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.34 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.34 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.32 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.32 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.3 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.29 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.28 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.25 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 99.24 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.2 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.18 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.13 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 99.13 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.1 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.09 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.09 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.08 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 99.04 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 99.04 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 99.02 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.99 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.98 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.95 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.95 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.93 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.91 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.87 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.86 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.86 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.85 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.84 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.83 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.83 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.81 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.81 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.79 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.78 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.78 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.77 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.77 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.77 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.75 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.75 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.74 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.73 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.72 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.72 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.7 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.68 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.67 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.66 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.65 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.64 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.63 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.63 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.63 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.61 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.59 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.57 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.55 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.53 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.52 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.51 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.51 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.48 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.47 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.46 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.46 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.45 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.44 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.44 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.44 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.43 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.42 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.4 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.39 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.39 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.38 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.38 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.37 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.37 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.36 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.35 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.35 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.35 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.35 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.35 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 98.33 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.27 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.27 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.26 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.25 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 98.24 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.22 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.22 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.21 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.2 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.2 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 98.2 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 98.19 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 98.19 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.17 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 98.16 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.15 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 98.14 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.14 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 98.12 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 98.11 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 98.1 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 98.1 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 98.06 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 98.04 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 98.04 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 98.03 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 98.0 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 98.0 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.98 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.88 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.87 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.87 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.84 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.84 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.81 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.81 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.76 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.62 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.56 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.54 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.54 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 97.53 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.49 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.45 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.43 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.34 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 97.32 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 97.3 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 97.27 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.26 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 97.11 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 97.04 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 97.01 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.9 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 96.89 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 96.75 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 96.65 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.64 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.62 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 96.6 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 96.38 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 96.28 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 96.23 | |
| 1qsa_A | 618 | Protein (soluble lytic transglycosylase SLT70); al | 96.15 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 96.13 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 95.96 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.93 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 95.79 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 95.6 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 95.33 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 95.23 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.16 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 94.62 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 94.28 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 94.26 | |
| 3lvg_A | 624 | Clathrin heavy chain 1; SELF assembly, coated PIT, | 93.81 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 93.73 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 92.92 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 92.43 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 92.4 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 91.87 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 91.8 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 90.93 | |
| 3esl_A | 202 | Checkpoint serine/threonine-protein kinase BUB1; m | 90.88 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 90.03 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 89.82 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 88.8 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 87.84 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 87.55 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 87.36 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 87.11 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 86.86 | |
| 2uwj_G | 115 | Type III export protein PSCG; virulence, chaperone | 86.61 | |
| 2p58_C | 116 | Putative type III secretion protein YSCG; type III | 86.25 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 86.07 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 86.05 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 84.69 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 84.26 | |
| 3ffl_A | 167 | Anaphase-promoting complex subunit 7; tetratricope | 83.85 | |
| 1y8m_A | 144 | FIS1; mitochondria, unknown function; NMR {Sacchar | 82.85 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 82.63 | |
| 3o48_A | 134 | Mitochondria fission 1 protein; tetratricopeptide | 82.31 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 81.34 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.1e-37 Score=326.62 Aligned_cols=426 Identities=10% Similarity=-0.033 Sum_probs=374.6
Q ss_pred CCHHHHHHHHHhccCCchH---HHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCCCHHHHHHHHccCC--CCCcccHHHH
Q 036003 19 TNTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIP--EPDIVLFNTM 93 (558)
Q Consensus 19 p~~~~~~~ll~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~l 93 (558)
++...|+.++..+.+.++. ..++..+.+ ..|+..++..++.+|.+. |++++|..+|+++. .++..+|+.+
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~l 156 (597)
T 2xpi_A 82 SREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCT---GDYARAKCLLTKEDLYNRSSACRYLA 156 (597)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHT---TCHHHHHHHHHHTCGGGTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHc---CcHHHHHHHHHHHhccccchhHHHHH
Confidence 4667788999988887777 556666664 457888999999999999 99999999999984 5789999999
Q ss_pred HHHHhcCCCchHHHHHHHHhHHC---------------CCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCCh
Q 036003 94 ARGYSRSKTPIRAIFLFVELLNS---------------GLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSN 158 (558)
Q Consensus 94 i~~~~~~g~~~~A~~~~~~m~~~---------------g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~ 158 (558)
+.+|.+.|++++|+++|+++... |..++..+|+.++.++.+. |++++|.++|+++.+.+.. +
T Consensus 157 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~~p~-~ 233 (597)
T 2xpi_A 157 AFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNL--SNFDRAKECYKEALMVDAK-C 233 (597)
T ss_dssp HHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHCTT-C
T ss_pred HHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhCch-h
Confidence 99999999999999999854221 2234578999999999999 9999999999999987632 2
Q ss_pred HHHH--------------------------------------HHHHHHHHhCCChHHHHHHHhccCC--CCcchHHHHHH
Q 036003 159 LYVC--------------------------------------TTLINLYAECSDVEAARRIFENISE--PCVVSYNAIIT 198 (558)
Q Consensus 159 ~~~~--------------------------------------~~ll~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~ 198 (558)
...+ +.++..|.+.|++++|.++|+++.+ ++..+|+.++.
T Consensus 234 ~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~ 313 (597)
T 2xpi_A 234 YEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGLEKSSDLLLCKAD 313 (597)
T ss_dssp HHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTGGGCHHHHHHHHH
T ss_pred hHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcCCchHHHHHHHHH
Confidence 3332 2335567788999999999999988 88999999999
Q ss_pred HHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 036003 199 AYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDD 278 (558)
Q Consensus 199 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 278 (558)
+|.+.|++++|.++|+++.+.+ +.+..++..++.++.+.|++++|..+++++.+.. +.+..+++.++.+|.+.|++++
T Consensus 314 ~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~ 391 (597)
T 2xpi_A 314 TLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISE 391 (597)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHH
Confidence 9999999999999999998765 4477789999999999999999999999998764 5678899999999999999999
Q ss_pred HHHHHhccC---CCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhh
Q 036003 279 AVSVFDNMS---GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDK 355 (558)
Q Consensus 279 A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 355 (558)
|.++|+++. ..+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..++..++.+|.+.|++++|.++|+++.+.
T Consensus 392 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 470 (597)
T 2xpi_A 392 ARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYAL 470 (597)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999875 3478899999999999999999999999999864 347789999999999999999999999999873
Q ss_pred cCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-------CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 036003 356 YGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-------PIKST--PILWRTLLSSCSSHNNLGLAKQVIERIFELDDS 426 (558)
Q Consensus 356 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-------~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 426 (558)
.+.+..+|..++..|.+.|++++|.++|+++ +..|+ ..+|..++.+|.+.|++++|.+.++++++.+|+
T Consensus 471 --~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~ 548 (597)
T 2xpi_A 471 --FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTN 548 (597)
T ss_dssp --CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSC
T ss_pred --CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCC
Confidence 3457889999999999999999999999987 44676 789999999999999999999999999999999
Q ss_pred CcccHHhHHHHHHhcCChHHHHHHHHHHHhC
Q 036003 427 HGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 427 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
++.+|..++.+|.+.|++++|.+.++++.+.
T Consensus 549 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 549 DANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 9999999999999999999999999999874
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=100.00 E-value=1.9e-34 Score=302.20 Aligned_cols=408 Identities=11% Similarity=-0.001 Sum_probs=352.4
Q ss_pred CCCHHHHHHHHHhccCCchH---HHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCCC---------
Q 036003 18 CTNTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEP--------- 85 (558)
Q Consensus 18 ~p~~~~~~~ll~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~--------- 85 (558)
.|+..++..+..++.+.++. ..+++.+. ..+++..+++.++.+|.+. |++++|.++|+++...
T Consensus 114 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~~ 188 (597)
T 2xpi_A 114 TGNPNDAFWLAQVYCCTGDYARAKCLLTKED--LYNRSSACRYLAAFCLVKL---YDWQGALNLLGETNPFRKDEKNANK 188 (597)
T ss_dssp HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTC--GGGTCHHHHHHHHHHHHHT---TCHHHHHHHHCSSCTTC--------
T ss_pred CCCchHHHHHHHHHHHcCcHHHHHHHHHHHh--ccccchhHHHHHHHHHHHH---hhHHHHHHHHhccCCcccccccccc
Confidence 46778888888888888877 33333332 3478899999999999999 9999999999965433
Q ss_pred ----------CcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCc-ccHHHH--------------------------
Q 036003 86 ----------DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDD-YSFPSL-------------------------- 128 (558)
Q Consensus 86 ----------~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~l-------------------------- 128 (558)
++.+|+.++.+|.+.|++++|+++|++|.+.+ |+. ..+..+
T Consensus 189 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~ 266 (597)
T 2xpi_A 189 LLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKE 266 (597)
T ss_dssp --CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGG
T ss_pred ccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccc
Confidence 37899999999999999999999999998853 432 222222
Q ss_pred ------------HHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCC---CCcchH
Q 036003 129 ------------LKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE---PCVVSY 193 (558)
Q Consensus 129 ------------l~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~ 193 (558)
+..|.+. |++++|.++|+++.+. +++..+++.++.+|.+.|++++|.++|+++.+ .+..+|
T Consensus 267 ~~~~~~~~~~~~~~~~~~~--g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~ 342 (597)
T 2xpi_A 267 DAAFLRSLYMLKLNKTSHE--DELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDPYNLDVY 342 (597)
T ss_dssp GHHHHHHHHHTTSCTTTTH--HHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCCTTH
T ss_pred hHHHHHHHHHHHHHHHcCc--chHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCcccHHHH
Confidence 3344456 8999999999998875 58899999999999999999999999999864 577889
Q ss_pred HHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 036003 194 NAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKC 273 (558)
Q Consensus 194 ~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 273 (558)
+.++.+|.+.|++++|.++++++.+.. +.+..++..++..|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.
T Consensus 343 ~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~ 420 (597)
T 2xpi_A 343 PLHLASLHESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD-PQFGPAWIGFAHSFAIE 420 (597)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 999999999999999999999998653 5678899999999999999999999999998864 45678999999999999
Q ss_pred CCHHHHHHHHhccCC---CCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 036003 274 GRLDDAVSVFDNMSG---KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFY 350 (558)
Q Consensus 274 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 350 (558)
|++++|.++|+++.+ .+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|..++..|.+.|++++|.++|+
T Consensus 421 g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 499 (597)
T 2xpi_A 421 GEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQ 499 (597)
T ss_dssp TCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 999999999998753 378899999999999999999999999999853 3478899999999999999999999999
Q ss_pred Hchhhc---CCCCC--hhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcc
Q 036003 351 SMRDKY---GIVPG--IKHYGCMVDLLGRAGRLDEAYRFIDEL-PI-KSTPILWRTLLSSCSSHNNLGLAKQVIERIFEL 423 (558)
Q Consensus 351 ~~~~~~---~~~~~--~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 423 (558)
++.+.. +..|+ ..+|..++.+|.+.|++++|.++|+++ .. +.+..+|..+..+|...|++++|.+.|+++++.
T Consensus 500 ~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~ 579 (597)
T 2xpi_A 500 NALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAI 579 (597)
T ss_dssp HHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc
Confidence 998642 45676 789999999999999999999999997 22 347899999999999999999999999999999
Q ss_pred CCCCcccHHhHHHHHH
Q 036003 424 DDSHGGDYVILSNLCA 439 (558)
Q Consensus 424 ~~~~~~~~~~l~~~~~ 439 (558)
+|.++.++..+..+|.
T Consensus 580 ~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 580 SPNEIMASDLLKRALE 595 (597)
T ss_dssp CTTCHHHHHHHHHTTC
T ss_pred CCCChHHHHHHHHHHh
Confidence 9999999998888774
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.97 E-value=5.8e-27 Score=231.52 Aligned_cols=370 Identities=12% Similarity=0.075 Sum_probs=249.4
Q ss_pred HHhhcCCCCCCHHHHHHHHccCCC--C-CcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCc
Q 036003 61 NFCTQNPTTSSMEHAHLLFDRIPE--P-DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGA 137 (558)
Q Consensus 61 ~~~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~ 137 (558)
..+.+. |++++|.+.++.+.+ | +...+..+...+.+.|++++|...++...+.. +.+..+|..+...+...
T Consensus 7 ~~~~~~---g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~-- 80 (388)
T 1w3b_A 7 HREYQA---GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKER-- 80 (388)
T ss_dssp HHHHHH---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHH--
T ss_pred HHHHHC---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHC--
Confidence 344445 777777777766532 3 33455556666677777777777777766542 23556677777777777
Q ss_pred ccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCC--CC-cchHHHHHHHHHHCCCccHHHHHHH
Q 036003 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE--PC-VVSYNAIITAYARSSRPNEALSLFR 214 (558)
Q Consensus 138 ~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~g~~~~A~~~~~ 214 (558)
|++++|...|+++.+.. +.+...|..+..++.+.|++++|...|+++.+ |+ ...+..+...+...|++++|.+.|+
T Consensus 81 g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 159 (388)
T 1w3b_A 81 GQLQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYL 159 (388)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHH
Confidence 77777777777777653 33455677777777777777777777776654 33 3445666666777777777777777
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCH
Q 036003 215 ELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS---GKDT 291 (558)
Q Consensus 215 ~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~ 291 (558)
++.+.. +.+..++..+...+...|++++|...|+++.+.+ +.+...+..+...+...|++++|...|++.. ..+.
T Consensus 160 ~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~ 237 (388)
T 1w3b_A 160 KAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHA 237 (388)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCH
T ss_pred HHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCH
Confidence 776642 3345667777777777777777777777777654 3345566667777777777777777776654 2256
Q ss_pred HhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHH
Q 036003 292 QAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDL 371 (558)
Q Consensus 292 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 371 (558)
.+|..+...|.+.|++++|+..|+++.+.+ +.+..++..+...+.+.|++++|...|+++.+. .+.+..++..+...
T Consensus 238 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~ 314 (388)
T 1w3b_A 238 VVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHH
Confidence 667777777777777777777777777642 123556777777777777777777777777652 34566677777777
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcC
Q 036003 372 LGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAG 442 (558)
Q Consensus 372 ~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 442 (558)
+.+.|++++|.+.++++ ...| +..++..+..++.+.|++++|...|+++++..|.++.+|..++..+...|
T Consensus 315 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTC
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHcc
Confidence 77777777777777776 3333 45667777777777777777777777777777777777777777666554
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.96 E-value=1.8e-26 Score=228.03 Aligned_cols=354 Identities=13% Similarity=0.073 Sum_probs=308.1
Q ss_pred HHHHHhcCCCchHHHHHHHHhHHCCCCCCcc-cHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 036003 93 MARGYSRSKTPIRAIFLFVELLNSGLLPDDY-SFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAE 171 (558)
Q Consensus 93 li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 171 (558)
+...+.+.|++++|++.++++.+. .|+.. .+..+...+... |++++|...++...+.. +.+..+|..+...|.+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~--~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~ 79 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQC--RRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKE 79 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHH
Confidence 345677899999999999999875 45554 444555556666 99999999999998875 6678899999999999
Q ss_pred CCChHHHHHHHhccCC--C-CcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 036003 172 CSDVEAARRIFENISE--P-CVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIH 248 (558)
Q Consensus 172 ~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 248 (558)
.|++++|...|+++.+ | +..+|..+..++.+.|++++|.+.|+++.+.. +.+...+..+...+...|++++|...|
T Consensus 80 ~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~ 158 (388)
T 1w3b_A 80 RGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHH
Confidence 9999999999999865 4 45579999999999999999999999998863 334556777888899999999999999
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCC-
Q 036003 249 EYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSG---KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP- 324 (558)
Q Consensus 249 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p- 324 (558)
+++.+.. +.+..+|..+...|.+.|++++|...|+++.+ .+...|..+...+...|++++|+..|++..+. .|
T Consensus 159 ~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~ 235 (388)
T 1w3b_A 159 LKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSL--SPN 235 (388)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHH--CTT
T ss_pred HHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcC
Confidence 9999875 44578889999999999999999999998863 36778999999999999999999999999884 45
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHH
Q 036003 325 DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL--PIKSTPILWRTLLS 402 (558)
Q Consensus 325 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~ 402 (558)
+..++..+..++...|++++|.+.|+++.+ ..+.+..+|..+...+.+.|++++|.+.|+++ ..+.+..++..+..
T Consensus 236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~ 313 (388)
T 1w3b_A 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLAN 313 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHH
Confidence 568899999999999999999999999986 33445788999999999999999999999998 22457889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhC
Q 036003 403 SCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 403 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
.+...|++++|.+.++++++..|++..++..++.+|.+.|++++|.+.++++.+.
T Consensus 314 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 314 IKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999999999999999863
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=2e-28 Score=246.46 Aligned_cols=197 Identities=12% Similarity=0.142 Sum_probs=99.9
Q ss_pred HHHHHHHHHHHhCCCChH-HHHHHHHHHHHhCCChHHHHHHHhccCC----CCcchHHHHHHHHHHCCC---------cc
Q 036003 142 EGKQLHCFAIKLGLNSNL-YVCTTLINLYAECSDVEAARRIFENISE----PCVVSYNAIITAYARSSR---------PN 207 (558)
Q Consensus 142 ~a~~~~~~~~~~g~~~~~-~~~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~---------~~ 207 (558)
.++.+.+.+.+.+....+ .+++.+|++|++.|++++|.++|++|.+ ||..+||+||.+|++.+. .+
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 344444555554443322 2355556666666666666666665543 555666666666555443 34
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC
Q 036003 208 EALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS 287 (558)
Q Consensus 208 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 287 (558)
+|.++|++|.+.|+.||..||+++|.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~ 167 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMV 167 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHH
Confidence 45556666665566666666666666666666666666666666555555555555555555555555555555555553
Q ss_pred ----CCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036003 288 ----GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSH 338 (558)
Q Consensus 288 ----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 338 (558)
.||..+|++||.+|++.|+.++|.++|++|.+.|..|+..||+.++..|+.
T Consensus 168 ~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 168 ESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred hcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 234555555555555555555555555555555555555555555554443
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=8e-29 Score=249.30 Aligned_cols=186 Identities=15% Similarity=0.147 Sum_probs=174.9
Q ss_pred ccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcC-------cccHHHHHHHHHHHHHhCCCChHH
Q 036003 88 VLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG-------AEALEEGKQLHCFAIKLGLNSNLY 160 (558)
Q Consensus 88 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~-------~~~~~~a~~~~~~~~~~g~~~~~~ 160 (558)
..++.+|.+|++.|++++|+++|++|.+.|++||..||++||.+|+..+ .+.+++|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 4588899999999999999999999999999999999999999998652 145899999999999999999999
Q ss_pred HHHHHHHHHHhCCChHHHHHHHhccCC----CCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHh
Q 036003 161 VCTTLINLYAECSDVEAARRIFENISE----PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCA 236 (558)
Q Consensus 161 ~~~~ll~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~ 236 (558)
+|++||.+|++.|++++|.++|++|.+ ||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+.||.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 999999999999999999999999974 8999999999999999999999999999999999999999999999999
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc
Q 036003 237 LLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKC 273 (558)
Q Consensus 237 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 273 (558)
+.|++++|.+++++|.+.+..|+..+|+.++..|+..
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999999999999999988764
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.93 E-value=1.7e-23 Score=214.50 Aligned_cols=394 Identities=9% Similarity=-0.031 Sum_probs=313.4
Q ss_pred hhHHHHHHHHhhcCCCCCCHHHHHHHHccCCC--CCcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHH
Q 036003 53 LNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE--PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLK 130 (558)
Q Consensus 53 ~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 130 (558)
...+..+...+.+. |++++|...|+++.. |+...|..+..++.+.|++++|+..|+++.+.+. .+...+..+..
T Consensus 6 a~~~~~~g~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~ 81 (514)
T 2gw1_A 6 ALALKDKGNQFFRN---KKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP-DYSKVLLRRAS 81 (514)
T ss_dssp HHHHHHHHHHHHHT---SCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS-CCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---ccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh-HHHHHHHHHHH
Confidence 34566677788888 999999999998764 7888899999999999999999999999987642 24567888888
Q ss_pred HHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHH----------------------------
Q 036003 131 ACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIF---------------------------- 182 (558)
Q Consensus 131 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~---------------------------- 182 (558)
++... |++++|...|+.+.+.+ +++......++..+.+......+.+.+
T Consensus 82 ~~~~~--g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (514)
T 2gw1_A 82 ANEGL--GKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENL 158 (514)
T ss_dssp HHHHT--TCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CC
T ss_pred HHHHH--hhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCC
Confidence 88888 99999999999998876 333333333444333322222221111
Q ss_pred ----------hccCC---------C-CcchHHHHHHHHHH---CCCccHHHHHHHHHHH-----CCCC--------CCHH
Q 036003 183 ----------ENISE---------P-CVVSYNAIITAYAR---SSRPNEALSLFRELQE-----RNLK--------PTDV 226 (558)
Q Consensus 183 ----------~~~~~---------~-~~~~~~~li~~~~~---~g~~~~A~~~~~~m~~-----~~~~--------p~~~ 226 (558)
..... | +...+......+.. .|++++|...|+++.+ ..-. .+..
T Consensus 159 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (514)
T 2gw1_A 159 PSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAI 238 (514)
T ss_dssp CCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHH
T ss_pred chhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHH
Confidence 11110 1 13334444444554 8999999999999987 3112 2345
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC---CHHhHHHHHHHHHH
Q 036003 227 TMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK---DTQAWSAMIVAYAT 303 (558)
Q Consensus 227 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~ 303 (558)
.+..+...+...|++++|..+++++.+.... ...+..+..+|...|++++|...|+.+.+. +...|..+...|..
T Consensus 239 ~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 316 (514)
T 2gw1_A 239 SLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSNNSSVYYHRGQMNFI 316 (514)
T ss_dssp HHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTTCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcCCHHHHHHHHHHHHH
Confidence 7778888999999999999999999988644 888888999999999999999999987643 67789999999999
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHH
Q 036003 304 HGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYR 383 (558)
Q Consensus 304 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 383 (558)
.|++++|...|++..+... .+...+..+...+...|++++|...++++.+. .+.+...+..+...|.+.|++++|.+
T Consensus 317 ~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~ 393 (514)
T 2gw1_A 317 LQNYDQAGKDFDKAKELDP-ENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEAPEVPNFFAEILTDKNDFDKALK 393 (514)
T ss_dssp TTCTTHHHHHHHHHHHTCS-SCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHTTCHHHHHH
T ss_pred hCCHHHHHHHHHHHHHhCh-hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccCHHHHHHHHHHHHHCCCHHHHHH
Confidence 9999999999999998532 25678888999999999999999999999873 34467889999999999999999999
Q ss_pred HHHhC----CCCCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHH
Q 036003 384 FIDEL----PIKST----PILWRTLLSSCSS---HNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRK 452 (558)
Q Consensus 384 ~~~~~----~~~~~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 452 (558)
.++++ +..++ ...+..+...+.. .|++++|...++++++..|.++.++..++.+|.+.|++++|...++
T Consensus 394 ~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 473 (514)
T 2gw1_A 394 QYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFE 473 (514)
T ss_dssp HHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 99887 22232 4488999999999 9999999999999999999999999999999999999999999999
Q ss_pred HHHhCC
Q 036003 453 LMKDRG 458 (558)
Q Consensus 453 ~m~~~g 458 (558)
+..+..
T Consensus 474 ~a~~~~ 479 (514)
T 2gw1_A 474 ESADLA 479 (514)
T ss_dssp HHHHHC
T ss_pred HHHHhc
Confidence 998743
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.91 E-value=1.3e-22 Score=207.89 Aligned_cols=394 Identities=11% Similarity=-0.033 Sum_probs=308.0
Q ss_pred HhccCCchH---HHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCC---CCcccHHHHHHHHhcCCC
Q 036003 29 PRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE---PDIVLFNTMARGYSRSKT 102 (558)
Q Consensus 29 ~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~ 102 (558)
..+...++. ...+..+.+.. |+...+..+..+|.+. |++++|...|+++.+ .+..+|..+...+.+.|+
T Consensus 14 ~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~ 88 (514)
T 2gw1_A 14 NQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSV---GDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGK 88 (514)
T ss_dssp HHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHH---hhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhh
Confidence 344444444 66667777665 7899999999999999 999999999998754 356789999999999999
Q ss_pred chHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhC--------------------C-------
Q 036003 103 PIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLG--------------------L------- 155 (558)
Q Consensus 103 ~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g--------------------~------- 155 (558)
+++|+..|+++.+.+. ++......++..+... .....+.+.+..+...+ .
T Consensus 89 ~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (514)
T 2gw1_A 89 FADAMFDLSVLSLNGD-FNDASIEPMLERNLNK--QAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165 (514)
T ss_dssp HHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHH--HHHHHHTTC---------------------------CCCCHHHHH
T ss_pred HHHHHHHHHHHHhcCC-CccchHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHH
Confidence 9999999999998753 4555555555555443 33333333332111110 0
Q ss_pred -----------------CChHHHHHHHHHHHHh---CCChHHHHHHHhccCC-----C------------CcchHHHHHH
Q 036003 156 -----------------NSNLYVCTTLINLYAE---CSDVEAARRIFENISE-----P------------CVVSYNAIIT 198 (558)
Q Consensus 156 -----------------~~~~~~~~~ll~~~~~---~g~~~~A~~~~~~~~~-----~------------~~~~~~~li~ 198 (558)
+.+...+..+...+.. .|++++|...|+++.+ . +..+|..+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (514)
T 2gw1_A 166 SFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGI 245 (514)
T ss_dssp HHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHH
Confidence 1124444444454554 8999999999988654 1 2456888899
Q ss_pred HHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 036003 199 AYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDD 278 (558)
Q Consensus 199 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 278 (558)
.+...|++++|...|+++.+.. |+...+..+..++...|++++|...++.+.+.. +.+..++..+..+|...|++++
T Consensus 246 ~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 246 FKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKALKLD-SNNSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC-TTCTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC-cCCHHHHHHHHHHHHHhCCHHH
Confidence 9999999999999999998864 447788899999999999999999999998764 4467788889999999999999
Q ss_pred HHHHHhccC---CCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhh
Q 036003 279 AVSVFDNMS---GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDK 355 (558)
Q Consensus 279 A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 355 (558)
|...|++.. ..+...|..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|...++++...
T Consensus 323 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~ 401 (514)
T 2gw1_A 323 AGKDFDKAKELDPENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIEL 401 (514)
T ss_dssp HHHHHHHHHHTCSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 999999875 3367789999999999999999999999998853 225678888999999999999999999998864
Q ss_pred cCCCCC----hhHHHHHHHHHhh---cCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 036003 356 YGIVPG----IKHYGCMVDLLGR---AGRLDEAYRFIDEL-PI-KSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS 426 (558)
Q Consensus 356 ~~~~~~----~~~~~~li~~~~~---~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 426 (558)
..-.++ ...+..+...+.. .|++++|.+.++++ .. +.+..++..+...+...|++++|...|+++++.+|.
T Consensus 402 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 481 (514)
T 2gw1_A 402 ENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLART 481 (514)
T ss_dssp HHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS
T ss_pred hhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccc
Confidence 222222 3488999999999 99999999999987 22 346788899999999999999999999999999998
Q ss_pred CcccHHhH
Q 036003 427 HGGDYVIL 434 (558)
Q Consensus 427 ~~~~~~~l 434 (558)
++..+..+
T Consensus 482 ~~~~~~~~ 489 (514)
T 2gw1_A 482 MEEKLQAI 489 (514)
T ss_dssp HHHHHHHH
T ss_pred cHHHHHHH
Confidence 87666554
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=5e-22 Score=200.13 Aligned_cols=319 Identities=12% Similarity=0.053 Sum_probs=232.7
Q ss_pred CcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHH
Q 036003 86 DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTL 165 (558)
Q Consensus 86 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 165 (558)
+...|..+...+.+.|++++|+.+|+++.+.. +.+...+..+..++... |++++|...++++++.+ +.+..++..+
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~-p~~~~~~~~l 100 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAM--GKSKAALPDLTKVIQLK-MDFTAARLQR 100 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHC--CCHHHHHHHHHHHHhcC-CCcHHHHHHH
Confidence 44567777777777777777777777776642 22456666666777777 77777777777777764 3345666666
Q ss_pred HHHHHhCCChHHHHHHHhccCC--CC-c---chHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 036003 166 INLYAECSDVEAARRIFENISE--PC-V---VSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLG 239 (558)
Q Consensus 166 l~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 239 (558)
..+|.+.|++++|...|+++.+ |+ . ..+..++..+... .+..+...+...|
T Consensus 101 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----------------------~~~~~a~~~~~~~ 157 (450)
T 2y4t_A 101 GHLLLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQ-----------------------RLRSQALNAFGSG 157 (450)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHcC
Confidence 7777777777777777766654 22 1 3344443331111 1222344466677
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHHhHHHHHHHHHHCCChHHHHHHHHH
Q 036003 240 SLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSG---KDTQAWSAMIVAYATHGQGHKSILMFEE 316 (558)
Q Consensus 240 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~ 316 (558)
++++|..+++++.+.. +.+..++..++.+|.+.|++++|.++|+++.+ .+..+|..++..|...|++++|+..|++
T Consensus 158 ~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 236 (450)
T 2y4t_A 158 DYTAAIAFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRE 236 (450)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 8888888888777654 44566777788888888888888888887753 4677888888888888889999988888
Q ss_pred HHHCCCCCC-HHHHHHH------------HHHHHccCChHHHHHHHHHchhhcCCCCC-----hhHHHHHHHHHhhcCCH
Q 036003 317 MMKAQVSPD-EITFLGL------------LYACSHTGLVDEGWNYFYSMRDKYGIVPG-----IKHYGCMVDLLGRAGRL 378 (558)
Q Consensus 317 m~~~g~~p~-~~~~~~l------------l~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~ 378 (558)
+.+. .|+ ...+..+ ...+.+.|++++|..+|+++.+. .|+ ...+..+..++.+.|++
T Consensus 237 ~~~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~ 311 (450)
T 2y4t_A 237 CLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT---EPSIAEYTVRSKERICHCFSKDEKP 311 (450)
T ss_dssp HHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCH
T ss_pred HHHh--CCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCcchHHHHHHHHHHHHHHHHCCCH
Confidence 8864 344 3334333 78889999999999999999864 333 45788899999999999
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHH
Q 036003 379 DEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNL 437 (558)
Q Consensus 379 ~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 437 (558)
++|...++++ ...| +...|..+..+|...|++++|...++++++..|.++.++..+..+
T Consensus 312 ~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 372 (450)
T 2y4t_A 312 VEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKA 372 (450)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHH
Confidence 9999999987 3334 688999999999999999999999999999999998888887744
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.91 E-value=6.8e-22 Score=199.12 Aligned_cols=346 Identities=10% Similarity=-0.001 Sum_probs=229.5
Q ss_pred CCChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCC---CCcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHH
Q 036003 50 QNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE---PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFP 126 (558)
Q Consensus 50 ~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 126 (558)
+.+...+..+...|.+. |++++|..+|+++.. .+..+|..+...+.+.|++++|+..|+++.+.+. .+...+.
T Consensus 23 p~~~~~~~~~~~~~~~~---g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~ 98 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAA---GQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKM-DFTAARL 98 (450)
T ss_dssp CHHHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred HHHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CcHHHHH
Confidence 45678899999999999 999999999998753 4678899999999999999999999999988643 2567888
Q ss_pred HHHHHHHhcCcccHHHHHHHHHHHHHhCCCChH---HHHHHHHHH------------HHhCCChHHHHHHHhccCC---C
Q 036003 127 SLLKACACVGAEALEEGKQLHCFAIKLGLNSNL---YVCTTLINL------------YAECSDVEAARRIFENISE---P 188 (558)
Q Consensus 127 ~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~---~~~~~ll~~------------~~~~g~~~~A~~~~~~~~~---~ 188 (558)
.+...+... |++++|...|+.+.+.. +.+. ..+..++.. +.+.|++++|...|+++.+ .
T Consensus 99 ~l~~~~~~~--g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~ 175 (450)
T 2y4t_A 99 QRGHLLLKQ--GKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCVW 175 (450)
T ss_dssp HHHHHHHHT--TCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHc--CCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 888999999 99999999999998764 3344 566666444 6666666666666666543 3
Q ss_pred CcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 036003 189 CVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALID 268 (558)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 268 (558)
+..++..++.+|.+.|++++|++.|+++.+.. +.+..++..+..++...|++++|...++++.+.. +.+...+..+..
T Consensus 176 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~~~ 253 (450)
T 2y4t_A 176 DAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDHKRCFAHYKQ 253 (450)
T ss_dssp CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CChHHHHHHHHH
Confidence 45556666666666666666666666665542 3345566666666666666666666666665543 112222222200
Q ss_pred HHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHccCChH
Q 036003 269 MHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPD-----EITFLGLLYACSHTGLVD 343 (558)
Q Consensus 269 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~ll~~~~~~g~~~ 343 (558)
. + ....+..++..+...|++++|+..|+++.+. .|+ ...+..+..++.+.|+++
T Consensus 254 ~----~---------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~ 312 (450)
T 2y4t_A 254 V----K---------------KLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPV 312 (450)
T ss_dssp H----H---------------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHH
T ss_pred H----H---------------HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHH
Confidence 0 0 0011222366666777777777777777663 343 335666667777777777
Q ss_pred HHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH------------HHhcC-
Q 036003 344 EGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKST-PILWRTLLSS------------CSSHN- 408 (558)
Q Consensus 344 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~------------~~~~g- 408 (558)
+|...++++... .+.+...|..+..+|...|++++|...|+++ ...|+ ...+..+..+ |...|
T Consensus 313 ~A~~~~~~a~~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~ 390 (450)
T 2y4t_A 313 EAIRVCSEVLQM--EPDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGV 390 (450)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCS
T ss_pred HHHHHHHHHHHh--CcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCC
Confidence 777777776642 2335667777777777777777777777766 33443 4444444422 33333
Q ss_pred ----CHHHHHHHHHH-HHccCCCC
Q 036003 409 ----NLGLAKQVIER-IFELDDSH 427 (558)
Q Consensus 409 ----~~~~a~~~~~~-~~~~~~~~ 427 (558)
+.+++.+.+++ .++..|++
T Consensus 391 ~~~~~~~~~~~~y~~~~l~~~pd~ 414 (450)
T 2y4t_A 391 KRNAKKQEIIKAYRKLALQWHPDN 414 (450)
T ss_dssp STTCCTTHHHHHHHHHHHHSCGGG
T ss_pred CccCCHHHHHHHHHHHHHHhCCCC
Confidence 56777888886 66666654
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.90 E-value=7.7e-21 Score=196.01 Aligned_cols=388 Identities=11% Similarity=0.031 Sum_probs=294.5
Q ss_pred hhHHHHHHHHhhcCCCCCCHHHHHHHHccCCC---CCcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHH
Q 036003 53 LNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE---PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLL 129 (558)
Q Consensus 53 ~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 129 (558)
...+..+...+.+. |++++|...|+++.. .+...|..+...|.+.|++++|++.|+++.+.+. .+...+..+.
T Consensus 25 a~~~~~~g~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la 100 (537)
T 3fp2_A 25 AVQLKNRGNHFFTA---KNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIKP-DHSKALLRRA 100 (537)
T ss_dssp HHHHHHHHHHHHHT---TCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHh---ccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHH
Confidence 45677778888888 999999999988754 4667888888999999999999999999887542 2556777777
Q ss_pred HHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCC----------------------
Q 036003 130 KACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE---------------------- 187 (558)
Q Consensus 130 ~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---------------------- 187 (558)
..+... |++++|...|+ .... .|+.. +..+..+...+....|...++.+..
T Consensus 101 ~~~~~~--g~~~~A~~~~~-~~~~--~~~~~--~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~ 173 (537)
T 3fp2_A 101 SANESL--GNFTDAMFDLS-VLSL--NGDFD--GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGI 173 (537)
T ss_dssp HHHHHH--TCHHHHHHHHH-HHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHT
T ss_pred HHHHHc--CCHHHHHHHHH-HHhc--CCCCC--hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHh
Confidence 888888 89999999886 3322 22211 1123333344444556665555532
Q ss_pred ---------------CCcc---hHHHHHHHHHH--------CCCccHHHHHHHHHHHCCCCCC--------HHHHHHHHH
Q 036003 188 ---------------PCVV---SYNAIITAYAR--------SSRPNEALSLFRELQERNLKPT--------DVTMLSALS 233 (558)
Q Consensus 188 ---------------~~~~---~~~~li~~~~~--------~g~~~~A~~~~~~m~~~~~~p~--------~~~~~~ll~ 233 (558)
.+.. ....+...+.. .|++++|..+|+++.+. .|+ ..++..+..
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~ 251 (537)
T 3fp2_A 174 FDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSA--NTVDDPLRENAALALCYTGI 251 (537)
T ss_dssp SCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHH
T ss_pred cChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHH--CCCcchhhHHHHHHHHHHHH
Confidence 1111 22222222221 24788999999998875 344 234666777
Q ss_pred HHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHHhHHHHHHHHHHCCChHHH
Q 036003 234 SCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS---GKDTQAWSAMIVAYATHGQGHKS 310 (558)
Q Consensus 234 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a 310 (558)
.+...|++++|...++.+.+.. |+...+..+...|...|++++|...|+++. ..+..+|..+...+...|++++|
T Consensus 252 ~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 329 (537)
T 3fp2_A 252 FHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNA 329 (537)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHH
Confidence 8889999999999999999875 447788889999999999999999999875 34678899999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--
Q 036003 311 ILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-- 388 (558)
Q Consensus 311 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-- 388 (558)
...|++..+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.|+++
T Consensus 330 ~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 406 (537)
T 3fp2_A 330 KEDFQKAQSLN-PENVYPYIQLACLLYKQGKFTESEAFFNETKLK--FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKR 406 (537)
T ss_dssp HHHHHHHHHHC-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 99999999853 224578888999999999999999999999874 3456778999999999999999999999986
Q ss_pred --CCC----CCHHHHHHHHHHHHhc----------CCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHH
Q 036003 389 --PIK----STPILWRTLLSSCSSH----------NNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRK 452 (558)
Q Consensus 389 --~~~----~~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 452 (558)
+.. .....+..+...+... |++++|...++++++..|.++.++..++.+|.+.|++++|.+.|+
T Consensus 407 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 486 (537)
T 3fp2_A 407 LEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFE 486 (537)
T ss_dssp HHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHH
Confidence 111 1223455556777777 999999999999999999999999999999999999999999999
Q ss_pred HHHhCC
Q 036003 453 LMKDRG 458 (558)
Q Consensus 453 ~m~~~g 458 (558)
+..+..
T Consensus 487 ~al~~~ 492 (537)
T 3fp2_A 487 DSAILA 492 (537)
T ss_dssp HHHHHC
T ss_pred HHHHhC
Confidence 998754
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.87 E-value=5.9e-20 Score=189.35 Aligned_cols=393 Identities=9% Similarity=-0.006 Sum_probs=295.7
Q ss_pred HHHHHHhccCCchH---HHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCC---CCcccHHHHHHHH
Q 036003 24 ALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE---PDIVLFNTMARGY 97 (558)
Q Consensus 24 ~~~ll~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~ 97 (558)
+..+-..+.+.++. ...+....+.. +.++..+..+..+|.+. |++++|.+.|+++.. .+...|..+...+
T Consensus 28 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~---g~~~~A~~~~~~al~~~p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 28 LKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYIST---GDLEKVIEFTTKALEIKPDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHH---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHc---CCHHHHHHHHHHHHhcCCchHHHHHHHHHHH
Confidence 33333444444444 77777777664 45678999999999999 999999999998754 4677889999999
Q ss_pred hcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhC------CCChHH-----------
Q 036003 98 SRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLG------LNSNLY----------- 160 (558)
Q Consensus 98 ~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g------~~~~~~----------- 160 (558)
...|++++|+..|+.+ .. .|+.. ...+..+... +...++...++.++... ..|+..
T Consensus 104 ~~~g~~~~A~~~~~~~-~~--~~~~~--~~~~~~~~~~--~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 176 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVL-SL--NGDFD--GASIEPMLER--NLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDS 176 (537)
T ss_dssp HHHTCHHHHHHHHHHH-C---------------CHHHH--HHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCH
T ss_pred HHcCCHHHHHHHHHHH-hc--CCCCC--hHHHHHHHHH--HHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcCh
Confidence 9999999999999743 22 23322 2223344444 66777888888775431 111111
Q ss_pred -------------------HHHHHHHHHHhC--------CChHHHHHHHhccCC--CC--------cchHHHHHHHHHHC
Q 036003 161 -------------------VCTTLINLYAEC--------SDVEAARRIFENISE--PC--------VVSYNAIITAYARS 203 (558)
Q Consensus 161 -------------------~~~~ll~~~~~~--------g~~~~A~~~~~~~~~--~~--------~~~~~~li~~~~~~ 203 (558)
....+...+... |++++|..+|+++.+ |+ ..+|..+...+...
T Consensus 177 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~ 256 (537)
T 3fp2_A 177 HLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLK 256 (537)
T ss_dssp HHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhc
Confidence 222333333222 478999999998876 33 22577777889999
Q ss_pred CCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHH
Q 036003 204 SRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVF 283 (558)
Q Consensus 204 g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 283 (558)
|++++|...|++..+. .|+...+..+...+...|++++|...++++.+.. +.+..++..+...|...|++++|...|
T Consensus 257 ~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~ 333 (537)
T 3fp2_A 257 NNLLDAQVLLQESINL--HPTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYKNAKEDF 333 (537)
T ss_dssp TCHHHHHHHHHHHHHH--CCCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 9999999999999885 5668889999999999999999999999999875 446778889999999999999999999
Q ss_pred hccCC---CCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCC
Q 036003 284 DNMSG---KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVP 360 (558)
Q Consensus 284 ~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~ 360 (558)
+++.+ .+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...|+++.+...-.+
T Consensus 334 ~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~ 412 (537)
T 3fp2_A 334 QKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQE 412 (537)
T ss_dssp HHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcch
Confidence 98753 367789999999999999999999999999853 33467888899999999999999999999876421111
Q ss_pred ----ChhHHHHHHHHHhhc----------CCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccC
Q 036003 361 ----GIKHYGCMVDLLGRA----------GRLDEAYRFIDEL-PI-KSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD 424 (558)
Q Consensus 361 ----~~~~~~~li~~~~~~----------g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 424 (558)
....+..+...+.+. |++++|...|++. .. +.+...+..+...+...|++++|.+.|+++++..
T Consensus 413 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 413 KIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp SCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred hhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 223345556777787 9999999999987 22 3467889999999999999999999999999999
Q ss_pred CCCcccH
Q 036003 425 DSHGGDY 431 (558)
Q Consensus 425 ~~~~~~~ 431 (558)
|.+....
T Consensus 493 ~~~~~~~ 499 (537)
T 3fp2_A 493 RTMDEKL 499 (537)
T ss_dssp --CHHHH
T ss_pred CCcHHHH
Confidence 8875543
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.87 E-value=4.9e-19 Score=172.11 Aligned_cols=303 Identities=9% Similarity=0.024 Sum_probs=192.1
Q ss_pred cHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCC---CCcchHHHHHHHH
Q 036003 124 SFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE---PCVVSYNAIITAY 200 (558)
Q Consensus 124 ~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~ 200 (558)
.+..+...+... |++++|...|+.+++.. +.+..++..+...+...|++++|...|+++.+ .+...|..+...+
T Consensus 5 ~~~~~~~~~~~~--g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 5 KHLELGKKLLAA--GQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHT--TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc--CCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 444455555555 66666666666666653 33455666666666666666666666666543 2344566666666
Q ss_pred HHCCCccHHHHHHHHHHHCCCCC----CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 036003 201 ARSSRPNEALSLFRELQERNLKP----TDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRL 276 (558)
Q Consensus 201 ~~~g~~~~A~~~~~~m~~~~~~p----~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 276 (558)
...|++++|...|++..+. .| +...+..+.... . ...+..+...+...|++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~-------~----------------~~~~~~~a~~~~~~~~~ 136 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKAD-------E----------------MQRLRSQALDAFDGADY 136 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHTTCH
T ss_pred HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHH-------H----------------HHHHHHHHHHHHHccCH
Confidence 6666666666666666553 23 122222221000 0 00111234566667777
Q ss_pred HHHHHHHhccC---CCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHch
Q 036003 277 DDAVSVFDNMS---GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMR 353 (558)
Q Consensus 277 ~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 353 (558)
++|.+.|+++. ..+...+..+...+...|++++|+..++++.+.. +.+...+..+...+...|++++|...+++..
T Consensus 137 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 137 TAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777776654 2355667777777777777777777777777642 2355667777777777777777777777776
Q ss_pred hhcCCCCChhHHH------------HHHHHHhhcCCHHHHHHHHHhC-CCCCC-H----HHHHHHHHHHHhcCCHHHHHH
Q 036003 354 DKYGIVPGIKHYG------------CMVDLLGRAGRLDEAYRFIDEL-PIKST-P----ILWRTLLSSCSSHNNLGLAKQ 415 (558)
Q Consensus 354 ~~~~~~~~~~~~~------------~li~~~~~~g~~~~A~~~~~~~-~~~~~-~----~~~~~l~~~~~~~g~~~~a~~ 415 (558)
+. .+.+...+. .+...+.+.|++++|.+.++++ ...|+ . ..+..+..++...|++++|..
T Consensus 216 ~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 216 KL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 53 122222222 2356678888888888888876 22233 2 234557778888889999999
Q ss_pred HHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhC
Q 036003 416 VIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
.++++++..|.++.++..++.+|.+.|++++|.+.+++..+.
T Consensus 294 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~ 335 (359)
T 3ieg_A 294 ICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEH 335 (359)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 999888888888888888888888899999999888888764
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.5e-19 Score=171.76 Aligned_cols=324 Identities=11% Similarity=0.006 Sum_probs=233.3
Q ss_pred CcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHH
Q 036003 86 DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTL 165 (558)
Q Consensus 86 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 165 (558)
|+..|..+...+.+.|++++|+..|+++.+... .+...+..+...+... |++++|...++.+.+.. +.+...+..+
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~--~~~~~A~~~~~~~~~~~-~~~~~~~~~l 77 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAM--GKSKAALPDLTKVIALK-MDFTAARLQR 77 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHc--cCHHHHHHHHHHHHHhC-CCcchHHHHH
Confidence 355678889999999999999999999988633 3567788888888888 99999999999999875 4467889999
Q ss_pred HHHHHhCCChHHHHHHHhccCCCCc------chHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 036003 166 INLYAECSDVEAARRIFENISEPCV------VSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLG 239 (558)
Q Consensus 166 l~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 239 (558)
...|...|++++|...|+++.+.+. ..+..+...+. ...+..+...+...|
T Consensus 78 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~-----------------------~~~~~~~a~~~~~~~ 134 (359)
T 3ieg_A 78 GHLLLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADE-----------------------MQRLRSQALDAFDGA 134 (359)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHTT
T ss_pred HHHHHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHcc
Confidence 9999999999999999999876332 22333311100 011223344455566
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHHhHHHHHHHHHHCCChHHHHHHHHH
Q 036003 240 SLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSG---KDTQAWSAMIVAYATHGQGHKSILMFEE 316 (558)
Q Consensus 240 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~ 316 (558)
++++|..+++.+.+.. +.+...+..+..++...|++++|...|+.+.+ .+..+|..+...+...|++++|...|++
T Consensus 135 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~ 213 (359)
T 3ieg_A 135 DYTAAITFLDKILEVC-VWDAELRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRE 213 (359)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 6666666666665543 33445555666666666666666666665542 2556666777777777777777777777
Q ss_pred HHHCCCCCC-HHHHH------------HHHHHHHccCChHHHHHHHHHchhhcCCCCCh----hHHHHHHHHHhhcCCHH
Q 036003 317 MMKAQVSPD-EITFL------------GLLYACSHTGLVDEGWNYFYSMRDKYGIVPGI----KHYGCMVDLLGRAGRLD 379 (558)
Q Consensus 317 m~~~g~~p~-~~~~~------------~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----~~~~~li~~~~~~g~~~ 379 (558)
..+. .|+ ...+. .+...+.+.|++++|...++++.+. . +.+. ..+..+...+.+.|+++
T Consensus 214 a~~~--~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~~~~~la~~~~~~~~~~ 289 (359)
T 3ieg_A 214 CLKL--DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT-E-PSVAEYTVRSKERICHCFSKDEKPV 289 (359)
T ss_dssp HHHH--CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-CSSHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHhh--CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc-C-CCchHHHHHHHHHHHHHHHHccCHH
Confidence 7663 232 22222 2356678889999999999998874 2 2222 33556788899999999
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhc
Q 036003 380 EAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARA 441 (558)
Q Consensus 380 ~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 441 (558)
+|.+.+++. ...| +..++..+...+...|++++|.+.|+++++.+|.+...+..+..++...
T Consensus 290 ~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~ 353 (359)
T 3ieg_A 290 EAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQRLL 353 (359)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHH
Confidence 999999987 3234 6789999999999999999999999999999999888877777665443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.84 E-value=2.3e-19 Score=172.19 Aligned_cols=289 Identities=14% Similarity=0.080 Sum_probs=142.4
Q ss_pred hcCCCCCCHHHHHHHHccCCCCCcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHH
Q 036003 64 TQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEG 143 (558)
Q Consensus 64 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a 143 (558)
.+. |++++|.++++++..| .+|..|+.++.+.|++++|++.|.+. +|..+|..++.++... |++++|
T Consensus 14 ~~~---~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~--g~~EeA 80 (449)
T 1b89_A 14 EHI---GNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTS--GNWEEL 80 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHc---cCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhC--CCHHHH
Confidence 356 8999999999999665 49999999999999999999999653 5788999999999998 999999
Q ss_pred HHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCC
Q 036003 144 KQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKP 223 (558)
Q Consensus 144 ~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p 223 (558)
..+++..++. .+++.+.+.|+.+|.+.|+++++.++++. |+..+|+.+...|...|++++|...|..+
T Consensus 81 i~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a------- 148 (449)
T 1b89_A 81 VKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV------- 148 (449)
T ss_dssp ------------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT-------
T ss_pred HHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh-------
Confidence 9988877774 45678899999999999999999988864 77789999999999999999999999987
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHH
Q 036003 224 TDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYAT 303 (558)
Q Consensus 224 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 303 (558)
..|..++.++.+.|++++|.+.+.++ .++.+|..++.+|...|+++.|......+. .++.-...++..|.+
T Consensus 149 --~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek 219 (449)
T 1b89_A 149 --SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQD 219 (449)
T ss_dssp --TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHH
T ss_pred --hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHH
Confidence 36899999999999999999999988 368899999999999999999988887765 455556679999999
Q ss_pred CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCC------ChhHHHHHHHHHhhcCC
Q 036003 304 HGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVP------GIKHYGCMVDLLGRAGR 377 (558)
Q Consensus 304 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~ 377 (558)
.|++++|+.+++...... +--...|+-|.-.+++- ++++..+.++...++-+++| +...|..++-.|...++
T Consensus 220 ~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e 297 (449)
T 1b89_A 220 RGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEE 297 (449)
T ss_dssp TTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred CCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhch
Confidence 999999999999988643 33455666666666654 34444444444444335555 57789999999999999
Q ss_pred HHHHHHHHHhC
Q 036003 378 LDEAYRFIDEL 388 (558)
Q Consensus 378 ~~~A~~~~~~~ 388 (558)
++.|...+-+-
T Consensus 298 ~d~A~~tm~~h 308 (449)
T 1b89_A 298 YDNAIITMMNH 308 (449)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHhC
Confidence 99998876665
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.83 E-value=1.9e-18 Score=165.93 Aligned_cols=285 Identities=11% Similarity=0.057 Sum_probs=185.4
Q ss_pred ChHHHHHHHHHHHHhCCChHHHHHHHhccCC---CCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036003 157 SNLYVCTTLINLYAECSDVEAARRIFENISE---PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALS 233 (558)
Q Consensus 157 ~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~ 233 (558)
.+...+..+...+...|++++|.++|+++.+ .+...+..++..+...|++++|..+++++.+.. +.+...+..+..
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 98 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVGC 98 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHH
Confidence 3444445555555555666666666655543 233444555555666666666666666665542 234455555666
Q ss_pred HHhccC-ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHHhHHHHHHHHHHCCChHH
Q 036003 234 SCALLG-SLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSG---KDTQAWSAMIVAYATHGQGHK 309 (558)
Q Consensus 234 ~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~ 309 (558)
.+...| ++++|...++++.+.. +.+...+..+..++...|++++|...|++..+ .+...+..+...|...|++++
T Consensus 99 ~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~ 177 (330)
T 3hym_B 99 YYLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKL 177 (330)
T ss_dssp HHHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHH
Confidence 666666 6666666666665543 23345566666666666666666666666542 234556667777777777777
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcC-------CCCChhHHHHHHHHHhhcCCHHHHH
Q 036003 310 SILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYG-------IVPGIKHYGCMVDLLGRAGRLDEAY 382 (558)
Q Consensus 310 a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~-------~~~~~~~~~~li~~~~~~g~~~~A~ 382 (558)
|...+++..+.. +.+...+..+...+...|++++|...++++.+... .+.....+..+...|.+.|++++|.
T Consensus 178 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~ 256 (330)
T 3hym_B 178 AERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEAL 256 (330)
T ss_dssp HHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHH
Confidence 777777777642 23456677777777777888888777777765311 1334567888888888888888888
Q ss_pred HHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHH-HhcCCh
Q 036003 383 RFIDEL-PI-KSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLC-ARAGRW 444 (558)
Q Consensus 383 ~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~~ 444 (558)
+.+++. .. +.+...+..+...+...|++++|.+.++++++..|.++..+..+..++ ...|+.
T Consensus 257 ~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 257 DYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCch
Confidence 888876 22 235677888888888888899999988888888888888888888877 344543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.82 E-value=4.1e-17 Score=165.91 Aligned_cols=367 Identities=12% Similarity=0.029 Sum_probs=299.2
Q ss_pred CCChhHHHHHHHHhhc----CCCCCCHHHHHHHHccCCC-CCcccHHHHHHHHhc----CCCchHHHHHHHHhHHCCCCC
Q 036003 50 QNDLNVLTKLINFCTQ----NPTTSSMEHAHLLFDRIPE-PDIVLFNTMARGYSR----SKTPIRAIFLFVELLNSGLLP 120 (558)
Q Consensus 50 ~~~~~~~~~li~~~~~----~~~~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p 120 (558)
..++..+..|-..|.. . +++++|...|++..+ .+...+..|...|.. .+++++|+.+|++..+.|
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~---~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--- 109 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETT---KDLTQAMDWFRRAAEQGYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--- 109 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSC---CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---
T ss_pred CCCHHHHHHHHHHHHcCCCCC---cCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---
Confidence 3466777777777776 6 899999999987654 567788888888988 899999999999998865
Q ss_pred CcccHHHHHHHHHh----cCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh----CCChHHHHHHHhccCC-CCcc
Q 036003 121 DDYSFPSLLKACAC----VGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAE----CSDVEAARRIFENISE-PCVV 191 (558)
Q Consensus 121 ~~~~~~~ll~~~~~----~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~-~~~~ 191 (558)
+...+..+-..+.. . +++++|...|++..+.| +...+..|...|.. .++.++|...|++..+ .+..
T Consensus 110 ~~~a~~~Lg~~y~~g~g~~--~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~~~~ 184 (490)
T 2xm6_A 110 LPQAQQNLGVMYHEGNGVK--VDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQGNVW 184 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSC--CCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHHHcCCCCC--CCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHH
Confidence 45666667777766 5 79999999999998876 56677788888887 7899999999988765 5777
Q ss_pred hHHHHHHHHHH----CCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHHhCCCCchhHH
Q 036003 192 SYNAIITAYAR----SSRPNEALSLFRELQERNLKPTDVTMLSALSSCAL----LGSLDLGKWIHEYIKKYGLDKYVKVN 263 (558)
Q Consensus 192 ~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~ 263 (558)
++..+...|.. .+++++|.+.|++..+.| +...+..+...+.. .++.++|..+|++..+.+ +...+
T Consensus 185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~ 258 (490)
T 2xm6_A 185 SCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---NSIAQ 258 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---CHHHH
T ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHH
Confidence 88888899988 899999999999988865 55667777777775 789999999999988765 34556
Q ss_pred HHHHHHHHh----cCCHHHHHHHHhccCCC-CHHhHHHHHHHHHHC-----CChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036003 264 TALIDMHAK----CGRLDDAVSVFDNMSGK-DTQAWSAMIVAYATH-----GQGHKSILMFEEMMKAQVSPDEITFLGLL 333 (558)
Q Consensus 264 ~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 333 (558)
..+..+|.. .++.++|..+|++..+. +...+..+...|... +++++|+..|++..+.| +...+..+.
T Consensus 259 ~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg 335 (490)
T 2xm6_A 259 FRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLG 335 (490)
T ss_dssp HHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHH
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHH
Confidence 667778887 89999999999988654 677888888888887 89999999999999875 456667777
Q ss_pred HHHHccC---ChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh
Q 036003 334 YACSHTG---LVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR----AGRLDEAYRFIDELPIKSTPILWRTLLSSCSS 406 (558)
Q Consensus 334 ~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~ 406 (558)
..|...| ++++|.+.|++..+. .+...+..|...|.. .+++++|.++|++.-...++..+..|...|..
T Consensus 336 ~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~~~~a~~~Lg~~y~~ 411 (490)
T 2xm6_A 336 AIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQGLSAAQVQLGEIYYY 411 (490)
T ss_dssp HHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHc
Confidence 7776656 789999999999874 367788889999988 89999999999987334577888889999988
Q ss_pred ----cCCHHHHHHHHHHHHccCCC---CcccHHhHHHHHHh
Q 036003 407 ----HNNLGLAKQVIERIFELDDS---HGGDYVILSNLCAR 440 (558)
Q Consensus 407 ----~g~~~~a~~~~~~~~~~~~~---~~~~~~~l~~~~~~ 440 (558)
.++.++|...|+++.+.+|. ++.....+..++..
T Consensus 412 g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~ 452 (490)
T 2xm6_A 412 GLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAK 452 (490)
T ss_dssp TSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHH
T ss_pred CCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHh
Confidence 89999999999999999844 66666666665543
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.82 E-value=1.8e-18 Score=169.10 Aligned_cols=280 Identities=10% Similarity=-0.042 Sum_probs=222.9
Q ss_pred HhCCChHHHHH-HHhccCC-----C--CcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCCh
Q 036003 170 AECSDVEAARR-IFENISE-----P--CVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSL 241 (558)
Q Consensus 170 ~~~g~~~~A~~-~~~~~~~-----~--~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 241 (558)
.-.|++++|.. .|++... | +...+..+...+.+.|++++|+..|+++.+.. +.+...+..+..++...|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 34578888888 8886654 1 35668888899999999999999999998863 45677888888999999999
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC---CHHhHHH---------------HHHHHHH
Q 036003 242 DLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK---DTQAWSA---------------MIVAYAT 303 (558)
Q Consensus 242 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~---------------li~~~~~ 303 (558)
++|...++++.+.. +.+..++..+..+|...|++++|.+.|+++... +...+.. .+..+..
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 193 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSLLS 193 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHHHH
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHHhh
Confidence 99999999998875 446778888999999999999999999887532 2222221 2333448
Q ss_pred CCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHH
Q 036003 304 HGQGHKSILMFEEMMKAQVSP-DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382 (558)
Q Consensus 304 ~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 382 (558)
.|++++|+..|+++.+..... +..++..+...+...|++++|...|+++... .+.+...+..+...+.+.|++++|.
T Consensus 194 ~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 194 DSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHcCCHHHHH
Confidence 899999999999999853221 4788999999999999999999999999863 3446789999999999999999999
Q ss_pred HHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC-----------cccHHhHHHHHHhcCChHHHHH
Q 036003 383 RFIDEL-PIK-STPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH-----------GGDYVILSNLCARAGRWEDVDY 449 (558)
Q Consensus 383 ~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~l~~~~~~~g~~~~A~~ 449 (558)
..|+++ ... .+...+..+..++...|++++|...|+++++..|.+ ..+|..++.+|...|++++|..
T Consensus 272 ~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 351 (368)
T 1fch_A 272 AAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGA 351 (368)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHH
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHH
Confidence 999987 323 467889999999999999999999999999988877 6789999999999999999999
Q ss_pred HHHH
Q 036003 450 LRKL 453 (558)
Q Consensus 450 ~~~~ 453 (558)
++++
T Consensus 352 ~~~~ 355 (368)
T 1fch_A 352 ADAR 355 (368)
T ss_dssp HHTT
T ss_pred hHHH
Confidence 8763
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.5e-17 Score=157.07 Aligned_cols=286 Identities=12% Similarity=-0.010 Sum_probs=164.9
Q ss_pred CcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHH
Q 036003 86 DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTL 165 (558)
Q Consensus 86 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 165 (558)
+...+..+...+...|++++|+.+|+++.+... .+...+..+...+... |++++|..+++++.+.. +.+...+..+
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~~~~~~~~--~~~~~A~~~~~~~~~~~-~~~~~~~~~l 96 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDP-FHASCLPVHIGTLVEL--NKANELFYLSHKLVDLY-PSNPVSWFAV 96 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCTTTHHHHHHHHHHH--TCHHHHHHHHHHHHHHC-TTSTHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CChhhHHHHHHHHHHh--hhHHHHHHHHHHHHHhC-cCCHHHHHHH
Confidence 444555556666666666666666666655421 1333444455555555 66666666666665543 2334445555
Q ss_pred HHHHHhCC-ChHHHHHHHhccCCCCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHH
Q 036003 166 INLYAECS-DVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLG 244 (558)
Q Consensus 166 l~~~~~~g-~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a 244 (558)
...+...| ++++|...|++. .+.. +.+...+..+...+...|++++|
T Consensus 97 ~~~~~~~~~~~~~A~~~~~~a-------------------------------~~~~-~~~~~~~~~l~~~~~~~~~~~~A 144 (330)
T 3hym_B 97 GCYYLMVGHKNEHARRYLSKA-------------------------------TTLE-KTYGPAWIAYGHSFAVESEHDQA 144 (330)
T ss_dssp HHHHHHSCSCHHHHHHHHHHH-------------------------------HTTC-TTCTHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHhhhhHHHHHHHHHHH-------------------------------HHhC-CccHHHHHHHHHHHHHccCHHHH
Confidence 55555555 555555555544 3321 12233444444444555555555
Q ss_pred HHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCC
Q 036003 245 KWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSG---KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321 (558)
Q Consensus 245 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 321 (558)
...++++.+.. +.+...+..+...|...|++++|...|++..+ .+...|..+...+...|++++|...+++..+..
T Consensus 145 ~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 223 (330)
T 3hym_B 145 MAAYFTAAQLM-KGCHLPMLYIGLEYGLTNNSKLAERFFSQALSIAPEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKI 223 (330)
T ss_dssp HHHHHHHHHHT-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHh
Confidence 55555544443 12233344455556666666666666655442 245566666677777777777777777666521
Q ss_pred --------CCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 036003 322 --------VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS 392 (558)
Q Consensus 322 --------~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~ 392 (558)
.+.....+..+..++...|++++|...+++..+. .+.+...+..+...|.+.|++++|.+.|++. ...|
T Consensus 224 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p 301 (330)
T 3hym_B 224 KAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVL--IPQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR 301 (330)
T ss_dssp TTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS
T ss_pred hhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhh--CccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC
Confidence 1223467777777888888888888888887763 2345677778888888888888888888877 4444
Q ss_pred -CHHHHHHHHHHH-HhcCCH
Q 036003 393 -TPILWRTLLSSC-SSHNNL 410 (558)
Q Consensus 393 -~~~~~~~l~~~~-~~~g~~ 410 (558)
+...+..+..++ ...|+.
T Consensus 302 ~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 302 DDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp CCHHHHHHHHHHHHTTTTC-
T ss_pred CchHHHHHHHHHHHHHhCch
Confidence 556666676666 344544
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.81 E-value=3.4e-16 Score=159.09 Aligned_cols=353 Identities=10% Similarity=-0.026 Sum_probs=297.7
Q ss_pred CCCcccHHHHHHHHhc----CCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHh----cCcccHHHHHHHHHHHHHhCC
Q 036003 84 EPDIVLFNTMARGYSR----SKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACAC----VGAEALEEGKQLHCFAIKLGL 155 (558)
Q Consensus 84 ~~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~~~~~~~~a~~~~~~~~~~g~ 155 (558)
..++.++..+...|.. .+++++|+..|++..+.| +...+..+-..+.. . ++.++|...|++..+.|
T Consensus 36 ~g~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~--~~~~~A~~~~~~a~~~~- 109 (490)
T 2xm6_A 36 SGEAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVP--QDYAQAVIWYKKAALKG- 109 (490)
T ss_dssp TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSC--CCHHHHHHHHHHHHHTT-
T ss_pred CCCHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCC--CCHHHHHHHHHHHHHCC-
Confidence 3577788888888887 899999999999998864 45667777777776 6 89999999999999876
Q ss_pred CChHHHHHHHHHHHHh----CCChHHHHHHHhccCC-CCcchHHHHHHHHHH----CCCccHHHHHHHHHHHCCCCCCHH
Q 036003 156 NSNLYVCTTLINLYAE----CSDVEAARRIFENISE-PCVVSYNAIITAYAR----SSRPNEALSLFRELQERNLKPTDV 226 (558)
Q Consensus 156 ~~~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~ 226 (558)
+...+..|...|.. .+++++|...|++..+ .+..++..|...|.. .+++++|++.|++..+.| +..
T Consensus 110 --~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~ 184 (490)
T 2xm6_A 110 --LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVW 184 (490)
T ss_dssp --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred --CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 56677778888888 8899999999998765 566778888888988 789999999999998865 667
Q ss_pred HHHHHHHHHhc----cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhccCCC-CHHhHHHH
Q 036003 227 TMLSALSSCAL----LGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAK----CGRLDDAVSVFDNMSGK-DTQAWSAM 297 (558)
Q Consensus 227 ~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~l 297 (558)
.+..+...+.. .++.++|..+|++..+.+ +...+..+...|.. .+++++|..+|++..+. +...+..+
T Consensus 185 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~l 261 (490)
T 2xm6_A 185 SCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGNSIAQFRL 261 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 77888888877 899999999999998875 45567778888886 78999999999987654 67788888
Q ss_pred HHHHHH----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc-----CChHHHHHHHHHchhhcCCCCChhHHHHH
Q 036003 298 IVAYAT----HGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHT-----GLVDEGWNYFYSMRDKYGIVPGIKHYGCM 368 (558)
Q Consensus 298 i~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 368 (558)
...|.. .+++++|+.+|++..+.| +...+..+...+... +++++|...|++..+. + +...+..|
T Consensus 262 g~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~-~---~~~a~~~l 334 (490)
T 2xm6_A 262 GYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ-G---DATAQANL 334 (490)
T ss_dssp HHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT-T---CHHHHHHH
T ss_pred HHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc-C---CHHHHHHH
Confidence 888888 899999999999998765 456677777777776 8999999999999874 3 55677888
Q ss_pred HHHHhhcC---CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHh-
Q 036003 369 VDLLGRAG---RLDEAYRFIDELPIKSTPILWRTLLSSCSS----HNNLGLAKQVIERIFELDDSHGGDYVILSNLCAR- 440 (558)
Q Consensus 369 i~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~- 440 (558)
...|...| ++++|.++|++.-...++..+..+...|.. .+++++|.+.|+++.+.+ ++.++..|+.+|..
T Consensus 335 g~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~--~~~a~~~Lg~~y~~g 412 (490)
T 2xm6_A 335 GAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG--LSAAQVQLGEIYYYG 412 (490)
T ss_dssp HHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHT
T ss_pred HHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC--CHHHHHHHHHHHHcC
Confidence 88888766 789999999988334678899999999998 899999999999999876 46788999999998
Q ss_pred ---cCChHHHHHHHHHHHhCCC
Q 036003 441 ---AGRWEDVDYLRKLMKDRGV 459 (558)
Q Consensus 441 ---~g~~~~A~~~~~~m~~~g~ 459 (558)
.+++++|...|++..+.+.
T Consensus 413 ~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 413 LGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp SSSCCCHHHHHHHHHHHHHHHC
T ss_pred CCCCCCHHHHHHHHHHHHHCCC
Confidence 8999999999999988764
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.80 E-value=2.7e-16 Score=161.59 Aligned_cols=394 Identities=13% Similarity=0.108 Sum_probs=284.9
Q ss_pred CCChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCC--C-CcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHH
Q 036003 50 QNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE--P-DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFP 126 (558)
Q Consensus 50 ~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~ 126 (558)
+-+...|..++.. .+. |++++|..+|+++.+ | +...|..++..+.+.|++++|..+|+++... .|+...|.
T Consensus 10 P~~~~~w~~l~~~-~~~---~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~ 83 (530)
T 2ooe_A 10 PYDLDAWSILIRE-AQN---QPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWK 83 (530)
T ss_dssp TTCHHHHHHHHHH-HHS---SCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHH
T ss_pred CCCHHHHHHHHHH-HHh---CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHH
Confidence 4467788888884 667 999999999998865 3 5567889999999999999999999999875 46766666
Q ss_pred HHHHHHH-hcCcccHHHHH----HHHHHHHHh-CCCC-hHHHHHHHHHHHHh---------CCChHHHHHHHhccCC-CC
Q 036003 127 SLLKACA-CVGAEALEEGK----QLHCFAIKL-GLNS-NLYVCTTLINLYAE---------CSDVEAARRIFENISE-PC 189 (558)
Q Consensus 127 ~ll~~~~-~~~~~~~~~a~----~~~~~~~~~-g~~~-~~~~~~~ll~~~~~---------~g~~~~A~~~~~~~~~-~~ 189 (558)
..+.... .. |+.+.|. ++|+..+.. |..| +...|...+....+ .|+++.|..+|++..+ |.
T Consensus 84 ~~~~~~~~~~--~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~ 161 (530)
T 2ooe_A 84 CYLSYVRETK--GKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPM 161 (530)
T ss_dssp HHHHHHHHHT--TTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCC
T ss_pred HHHHHHHHHc--cchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchh
Confidence 6664332 23 5555544 477776654 5443 45677777776655 6889999999998876 33
Q ss_pred c---chHHHHHHHH-------------HHCCCccHHHHHHHHHH------HCC---CCCCH--------HHHHHHHHHHh
Q 036003 190 V---VSYNAIITAY-------------ARSSRPNEALSLFRELQ------ERN---LKPTD--------VTMLSALSSCA 236 (558)
Q Consensus 190 ~---~~~~~li~~~-------------~~~g~~~~A~~~~~~m~------~~~---~~p~~--------~~~~~ll~~~~ 236 (558)
. ..|....... .+.+++..|..++.++. +.. ++|+. ..|...+....
T Consensus 162 ~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~ 241 (530)
T 2ooe_A 162 INIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEK 241 (530)
T ss_dssp TTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHH
Confidence 2 2333222211 12345677777776532 211 34442 34444443322
Q ss_pred c----cCCh----HHHHHHHHHHHHhCCCCchhHHHHHHHHHHh-------cCCHH-------HHHHHHhccCC---C-C
Q 036003 237 L----LGSL----DLGKWIHEYIKKYGLDKYVKVNTALIDMHAK-------CGRLD-------DAVSVFDNMSG---K-D 290 (558)
Q Consensus 237 ~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~~~~~~~~~---~-~ 290 (558)
. .++. ..+..+|+++.... +.+...|..++..+.+ .|+++ +|..+|++..+ | +
T Consensus 242 ~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~ 320 (530)
T 2ooe_A 242 SNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKN 320 (530)
T ss_dssp HCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSC
T ss_pred cCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCccc
Confidence 2 1233 36778898888763 4567788888888875 79987 89999998764 3 6
Q ss_pred HHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCC-H-HHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHH
Q 036003 291 TQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPD-E-ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCM 368 (558)
Q Consensus 291 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 368 (558)
...|..++..+.+.|++++|..+|+++.+ ..|+ . ..|..++..+.+.|++++|.++|++..+. .+.+...|...
T Consensus 321 ~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~--~~~~~~~~~~~ 396 (530)
T 2ooe_A 321 MLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTA 396 (530)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC--TTCCTHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--cCCchHHHHHH
Confidence 78899999999999999999999999998 4554 2 47888888888999999999999999863 22233444333
Q ss_pred HHH-HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcc----cHHhHHHHHHhc
Q 036003 369 VDL-LGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGG----DYVILSNLCARA 441 (558)
Q Consensus 369 i~~-~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~l~~~~~~~ 441 (558)
+.. +...|+.++|.++|++. ...| ++..|..++..+.+.|+.++|..+|++++...|.++. .|...+......
T Consensus 397 a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~ 476 (530)
T 2ooe_A 397 ALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNI 476 (530)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHc
Confidence 322 34689999999999987 2234 6789999999999999999999999999998766554 677778888889
Q ss_pred CChHHHHHHHHHHHh
Q 036003 442 GRWEDVDYLRKLMKD 456 (558)
Q Consensus 442 g~~~~A~~~~~~m~~ 456 (558)
|+.+.+..+++++.+
T Consensus 477 G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 477 GDLASILKVEKRRFT 491 (530)
T ss_dssp SCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998875
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.79 E-value=4.9e-18 Score=165.82 Aligned_cols=261 Identities=10% Similarity=-0.072 Sum_probs=212.9
Q ss_pred CcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 036003 189 CVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALID 268 (558)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 268 (558)
+...|..+...+.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|...|+++.+.. +.+...+..+..
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 141 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAV 141 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45568888899999999999999999988763 4567788899999999999999999999998875 445778888999
Q ss_pred HHHhcCCHHHHHHHHhccCCCC-------------HHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCC-CCHHHHHHHHH
Q 036003 269 MHAKCGRLDDAVSVFDNMSGKD-------------TQAWSAMIVAYATHGQGHKSILMFEEMMKAQVS-PDEITFLGLLY 334 (558)
Q Consensus 269 ~~~~~g~~~~A~~~~~~~~~~~-------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~~~~~~ll~ 334 (558)
+|...|++++|...|+++.+.+ ...+..+...+...|++++|+..|+++.+.... ++...+..+..
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 221 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGV 221 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHH
Confidence 9999999999999998876432 122344578899999999999999999985322 15788999999
Q ss_pred HHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 036003 335 ACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGL 412 (558)
Q Consensus 335 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~ 412 (558)
.+...|++++|...|+++.+. .+.+..+|..+..+|.+.|++++|.+.|+++ ...| +..++..+..+|...|++++
T Consensus 222 ~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 299 (365)
T 4eqf_A 222 LFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYRE 299 (365)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHH
T ss_pred HHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 999999999999999999873 3456889999999999999999999999987 3334 57889999999999999999
Q ss_pred HHHHHHHHHccCCC------------CcccHHhHHHHHHhcCChHHHHHHHHH
Q 036003 413 AKQVIERIFELDDS------------HGGDYVILSNLCARAGRWEDVDYLRKL 453 (558)
Q Consensus 413 a~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~ 453 (558)
|...|+++++..|. +...|..+..++...|+.+.+.++.++
T Consensus 300 A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 300 AVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred HHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 99999999998765 356789999999999999998887664
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.77 E-value=2.7e-17 Score=160.67 Aligned_cols=285 Identities=13% Similarity=-0.025 Sum_probs=148.3
Q ss_pred cCCCchHHHH-HHHHhHHCCC---CCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC
Q 036003 99 RSKTPIRAIF-LFVELLNSGL---LPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSD 174 (558)
Q Consensus 99 ~~g~~~~A~~-~~~~m~~~g~---~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 174 (558)
..|++++|+. .|++..+... ..+...+..+...+... |++++|...++++++.. +.+..++..+..+|.+.|+
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~--g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQE--GDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHT--TCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHC--CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcC
Confidence 3466777776 6665543211 11345566666667666 77777777777777654 4456667777777777777
Q ss_pred hHHHHHHHhccCC---CCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHH-HHHH---------------HHHHH
Q 036003 175 VEAARRIFENISE---PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDV-TMLS---------------ALSSC 235 (558)
Q Consensus 175 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~-~~~~---------------ll~~~ 235 (558)
+++|...|+++.+ .+..+|..+...|...|++++|.+.|+++.+.. |+.. .+.. .+..+
T Consensus 114 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 114 ELLAISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHH
T ss_pred HHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 7777777776653 355667777777777777777777777776643 2211 1110 11112
Q ss_pred hccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHH
Q 036003 236 ALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFE 315 (558)
Q Consensus 236 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 315 (558)
...|++++|..+++++.+..... .+..+|..+...|...|++++|+..|+
T Consensus 192 ~~~~~~~~A~~~~~~a~~~~p~~------------------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~ 241 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRLDPTS------------------------------IDPDVQCGLGVLFNLSGEYDKAVDCFT 241 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHHSTTS------------------------------CCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hhcccHHHHHHHHHHHHHhCcCc------------------------------ccHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 24445555555555544433111 023344444444555555555555555
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCC
Q 036003 316 EMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL----PIK 391 (558)
Q Consensus 316 ~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~ 391 (558)
++.+.. +.+...+..+...+...|++++|...|+++.+. .+.+...+..+...|.+.|++++|...|+++ +..
T Consensus 242 ~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~ 318 (368)
T 1fch_A 242 AALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALEL--QPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKS 318 (368)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC
T ss_pred HHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 544421 113344555555555555555555555555432 1223445555555555555555555555544 100
Q ss_pred ---------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036003 392 ---------STPILWRTLLSSCSSHNNLGLAKQVIERIF 421 (558)
Q Consensus 392 ---------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 421 (558)
....+|..+..++...|++++|..++++.+
T Consensus 319 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l 357 (368)
T 1fch_A 319 RGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARDL 357 (368)
T ss_dssp ------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTCH
T ss_pred CCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHHH
Confidence 014556666666666666666666655433
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.77 E-value=3.6e-16 Score=146.80 Aligned_cols=270 Identities=10% Similarity=0.008 Sum_probs=212.2
Q ss_pred HHHHhCCChHHHHHHHhccCCCC----cchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChH
Q 036003 167 NLYAECSDVEAARRIFENISEPC----VVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLD 242 (558)
Q Consensus 167 ~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 242 (558)
+-....|++..|+..+++....+ ......+..+|...|+++.|+..++.. -+|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~----~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS----SAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT----SCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc----CChhHHHHHHHHHHHcCCCcHH
Confidence 44556788889988888766532 234456778899999998888766442 3566778888888888999999
Q ss_pred HHHHHHHHHHHhCCCC-chhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCC
Q 036003 243 LGKWIHEYIKKYGLDK-YVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ 321 (558)
Q Consensus 243 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 321 (558)
+|.+.++++...+..| +...+..+..+|...|++++|++.|++ ..+...+..++..|.+.|++++|.+.|+++.+.
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~- 159 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ- 159 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-
Confidence 9999999988876434 566677778999999999999999998 567889999999999999999999999999985
Q ss_pred CCCCHHHH---HHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHH
Q 036003 322 VSPDEITF---LGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPIL 396 (558)
Q Consensus 322 ~~p~~~~~---~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~ 396 (558)
.|+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...|++. ...| ++.+
T Consensus 160 -~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~ 236 (291)
T 3mkr_A 160 -DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPET 236 (291)
T ss_dssp -CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred -CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHH
Confidence 4554311 22334445668999999999999974 5568889999999999999999999999997 3334 6788
Q ss_pred HHHHHHHHHhcCCHHH-HHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHH
Q 036003 397 WRTLLSSCSSHNNLGL-AKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYL 450 (558)
Q Consensus 397 ~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 450 (558)
+..++..+...|+.++ +.++++++++.+|.++.+. +...+.+.++++..-
T Consensus 237 l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~----d~~~~~~~fd~~~~~ 287 (291)
T 3mkr_A 237 LINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIK----EYRAKENDFDRLVLQ 287 (291)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHH----HHHHHHHHHHHHHHH
Confidence 9999999999999876 6799999999999986543 345555555555443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.76 E-value=2.5e-18 Score=165.02 Aligned_cols=279 Identities=10% Similarity=0.050 Sum_probs=125.7
Q ss_pred ccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHHCCCccHHHHHHHHHH
Q 036003 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217 (558)
Q Consensus 138 ~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 217 (558)
|++++|.++++++ +++.+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|+..++...
T Consensus 17 ~~ld~A~~fae~~------~~~~vWs~La~A~l~~g~~~eAIdsfika--~D~~~y~~V~~~ae~~g~~EeAi~yl~~ar 88 (449)
T 1b89_A 17 GNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMAR 88 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cCHHHHHHHHHhC------CChHHHHHHHHHHHHcCCHHHHHHHHHcC--CCHHHHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 7788888888776 23358888888888888888888888654 566688888888888888888888776665
Q ss_pred HCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHHhHHHH
Q 036003 218 ERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAM 297 (558)
Q Consensus 218 ~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 297 (558)
+. .++..+.+.++.+|.+.|+++++.++++ .|+..+|+.++..|...|++++|..+|..+ ..|..+
T Consensus 89 k~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a-----~n~~~L 154 (449)
T 1b89_A 89 KK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRL 154 (449)
T ss_dssp ----------------------CHHHHTTTTT-------CC----------------CTTTHHHHHHHT-----TCHHHH
T ss_pred Hh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh-----hhHHHH
Confidence 53 4556777888888888888888887774 366678888888888888888888888877 478888
Q ss_pred HHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCC
Q 036003 298 IVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGR 377 (558)
Q Consensus 298 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 377 (558)
+.++.+.|++++|.+.++++ .+..+|..++.+|...|+++.|...... +...+.....++..|.+.|+
T Consensus 155 A~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~------L~~~ad~l~~lv~~Yek~G~ 222 (449)
T 1b89_A 155 ASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDRGY 222 (449)
T ss_dssp HHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT------TTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH------HHhCHhhHHHHHHHHHHCCC
Confidence 88888888888888888887 2678888888888888888888554433 22344445568888888888
Q ss_pred HHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhc--CCHHHHHHHHHHHHccCC-----CCcccHHhHHHHHHhcCChHHHH
Q 036003 378 LDEAYRFIDEL-PI-KSTPILWRTLLSSCSSH--NNLGLAKQVIERIFELDD-----SHGGDYVILSNLCARAGRWEDVD 448 (558)
Q Consensus 378 ~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~ 448 (558)
+++|..+++.. +. +.....|+-|..+|++. ++..+.++.|..-+.+.| .+...|.-+...|...++|+.|.
T Consensus 223 ~eEai~lLe~aL~le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~ 302 (449)
T 1b89_A 223 FEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 302 (449)
T ss_dssp HHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHH
Confidence 88888888875 33 33566777777666654 455666666655444445 56778888888888888888877
Q ss_pred HH
Q 036003 449 YL 450 (558)
Q Consensus 449 ~~ 450 (558)
..
T Consensus 303 ~t 304 (449)
T 1b89_A 303 IT 304 (449)
T ss_dssp HH
T ss_pred HH
Confidence 64
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.75 E-value=7.9e-17 Score=154.37 Aligned_cols=259 Identities=12% Similarity=-0.012 Sum_probs=191.0
Q ss_pred chHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 036003 191 VSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMH 270 (558)
Q Consensus 191 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 270 (558)
..|..+...+...|++++|..+|+++.+.. +.+...+..+..++...|++++|...++++.+.. +.+..++..+...|
T Consensus 22 ~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 22 ENPMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 345555666666666666666666665542 2345556666666666666666666666666653 33455566666666
Q ss_pred HhcCCHHHHHHHHhccCCC---CHHhHHHH--------------HH-HHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHH
Q 036003 271 AKCGRLDDAVSVFDNMSGK---DTQAWSAM--------------IV-AYATHGQGHKSILMFEEMMKAQVSPDEITFLGL 332 (558)
Q Consensus 271 ~~~g~~~~A~~~~~~~~~~---~~~~~~~l--------------i~-~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 332 (558)
...|++++|.+.|+++.+. +...+..+ .. .+...|++++|...++++.+.. +.+...+..+
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 178 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASL 178 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 6667777776666665422 22222222 22 3667788999999999998853 2367888889
Q ss_pred HHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCH
Q 036003 333 LYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PI-KSTPILWRTLLSSCSSHNNL 410 (558)
Q Consensus 333 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~ 410 (558)
...+...|++++|...++++.+. .+.+...+..+...+...|++++|.+.|+++ .. +.+..++..+...+...|++
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~ 256 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVEL--RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQY 256 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhccH
Confidence 99999999999999999999863 3446788999999999999999999999987 22 34678899999999999999
Q ss_pred HHHHHHHHHHHccCCC------------CcccHHhHHHHHHhcCChHHHHHHHHHH
Q 036003 411 GLAKQVIERIFELDDS------------HGGDYVILSNLCARAGRWEDVDYLRKLM 454 (558)
Q Consensus 411 ~~a~~~~~~~~~~~~~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~m 454 (558)
++|.+.++++++..|. +...+..++.+|.+.|++++|..++++.
T Consensus 257 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 257 DLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 9999999999999988 6788999999999999999999998744
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2.3e-14 Score=153.05 Aligned_cols=350 Identities=13% Similarity=0.073 Sum_probs=273.5
Q ss_pred CChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCC-CC-----cccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCccc
Q 036003 51 NDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE-PD-----IVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYS 124 (558)
Q Consensus 51 ~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~-~~-----~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~ 124 (558)
.++.-....+.+|... |.+.+|.++++++.- ++ ...-+.++.+..+. +..+..+...+.... .
T Consensus 983 ~~PeeVs~~vKaf~~a---glp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~-------d 1051 (1630)
T 1xi4_A 983 QDPEEVSVTVKAFMTA---DLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY-------D 1051 (1630)
T ss_pred cCHHHhHHHHHHHHhC---CCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc-------c
Confidence 3344445667888888 999999999998763 22 24455677666666 556666666655421 1
Q ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHHCC
Q 036003 125 FPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSS 204 (558)
Q Consensus 125 ~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 204 (558)
...+...+... |.+++|..+|++.. -.....+.++. ..+++++|.++.++.. +..+|..+..++.+.|
T Consensus 1052 ~~eIA~Iai~l--glyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn--~p~vWsqLAKAql~~G 1119 (1630)
T 1xi4_A 1052 APDIANIAISN--ELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN--EPAVWSQLAKAQLQKG 1119 (1630)
T ss_pred HHHHHHHHHhC--CCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC--CHHHHHHHHHHHHhCC
Confidence 33455667777 99999999998852 12222333332 7789999999999874 4678999999999999
Q ss_pred CccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHh
Q 036003 205 RPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFD 284 (558)
Q Consensus 205 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 284 (558)
++++|++.|.+. -|...|..++.+|.+.|++++|.+++....+..-.+.+ .+.++.+|++.+++++...+.
T Consensus 1120 ~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~I--dt~LafaYAKl~rleele~fI- 1190 (1630)
T 1xi4_A 1120 MVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYV--ETELIFALAKTNRLAELEEFI- 1190 (1630)
T ss_pred CHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccc--cHHHHHHHHhhcCHHHHHHHH-
Confidence 999999999663 46778899999999999999999999988876533333 345999999999999755553
Q ss_pred ccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhH
Q 036003 285 NMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKH 364 (558)
Q Consensus 285 ~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 364 (558)
..++...|..+...|...|++++|..+|... ..|..+..++.+.|+++.|.+.+++.. +..+
T Consensus 1191 --~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~a 1252 (1630)
T 1xi4_A 1191 --NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRT 1252 (1630)
T ss_pred --hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHH
Confidence 4556777888999999999999999999985 479999999999999999999998773 5689
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhc--C
Q 036003 365 YGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARA--G 442 (558)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g 442 (558)
|..+..+|...|++..|......+ ..++..+..++..|.+.|.+++|+.+++..+.+++.+...|.-|...|++. +
T Consensus 1253 Wkev~~acve~~Ef~LA~~cgl~I--iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~pe 1330 (1630)
T 1xi4_A 1253 WKEVCFACVDGKEFRLAQMCGLHI--VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQ 1330 (1630)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHhh--hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHH
Confidence 999999999999999999987764 345566778999999999999999999999999999988898888888765 3
Q ss_pred ChHHHHHHHH
Q 036003 443 RWEDVDYLRK 452 (558)
Q Consensus 443 ~~~~A~~~~~ 452 (558)
+..++.++|.
T Consensus 1331 klmEhlk~f~ 1340 (1630)
T 1xi4_A 1331 KMREHLELFW 1340 (1630)
T ss_pred HHHHHHHHHH
Confidence 4555555554
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.74 E-value=5.5e-16 Score=156.87 Aligned_cols=381 Identities=10% Similarity=-0.076 Sum_probs=217.8
Q ss_pred CChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCC-----------C-CcccHHHHHHHHhcCCCchHHHHHHHHhHHC--
Q 036003 51 NDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE-----------P-DIVLFNTMARGYSRSKTPIRAIFLFVELLNS-- 116 (558)
Q Consensus 51 ~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~-----------~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-- 116 (558)
.....||.|...|... |++++|++.|++..+ | ...+|+.+...|...|++++|...|++..+.
T Consensus 49 ~~a~~yn~Lg~~~~~~---G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~ 125 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLK---GQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCE 125 (472)
T ss_dssp -CCHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhH
Confidence 3356778787788887 888888887765421 2 3456778888888888888888887776542
Q ss_pred ---C-CCC-CcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHH---HHhCCChHHHHHHHhccCC-
Q 036003 117 ---G-LLP-DDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINL---YAECSDVEAARRIFENISE- 187 (558)
Q Consensus 117 ---g-~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~---~~~~g~~~~A~~~~~~~~~- 187 (558)
+ ..+ ...++...-.++...+.+++++|...|++.++.. +-+...+..+..+ +...++.++|++.|++..+
T Consensus 126 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l 204 (472)
T 4g1t_A 126 KFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRL 204 (472)
T ss_dssp HSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHH
T ss_pred hcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhc
Confidence 1 011 1233444444444443357788888888877764 2234444444433 3345666667666665543
Q ss_pred --CCcchHHHHHHHHHH----CCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchh
Q 036003 188 --PCVVSYNAIITAYAR----SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVK 261 (558)
Q Consensus 188 --~~~~~~~~li~~~~~----~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 261 (558)
.+..++..+...+.. .|++++|.+.+++..... +.+...+..+...+...|++++|...++++.+.. +.+..
T Consensus 205 ~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~ 282 (472)
T 4g1t_A 205 NPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYI-PNNAY 282 (472)
T ss_dssp CSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHH
T ss_pred CCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC-CChHH
Confidence 234444444444433 356677777777766542 3455566677777777777777777777777654 33444
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 036003 262 VNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGL 341 (558)
Q Consensus 262 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 341 (558)
++..+..+|...+....+... ..........+.+++|...+++..+.. +.+...+..+...+...|+
T Consensus 283 ~~~~lg~~y~~~~~~~~~~~~------------~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~ 349 (472)
T 4g1t_A 283 LHCQIGCCYRAKVFQVMNLRE------------NGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQ 349 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHC------------------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHhhhHHH------------HHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhcc
Confidence 555555555332111110000 000001111223567788888777642 1234567778888888999
Q ss_pred hHHHHHHHHHchhhcCCCCCh--hHHHHHHH-HHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 036003 342 VDEGWNYFYSMRDKYGIVPGI--KHYGCMVD-LLGRAGRLDEAYRFIDEL-PIKSTPILWRTLLSSCSSHNNLGLAKQVI 417 (558)
Q Consensus 342 ~~~a~~~~~~~~~~~~~~~~~--~~~~~li~-~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 417 (558)
+++|...|++..+. ...+.. ..+..+.. .+...|++++|+..|++. .+.|+..... +....+.+++
T Consensus 350 ~~~A~~~~~kaL~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~---------~~~~~l~~~~ 419 (472)
T 4g1t_A 350 YEEAEYYFQKEFSK-ELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKE---------KMKDKLQKIA 419 (472)
T ss_dssp HHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHH---------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhc-CCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHH---------HHHHHHHHHH
Confidence 99999999888753 322211 12233332 234678899999988876 4455543222 2234566778
Q ss_pred HHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 036003 418 ERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVL 460 (558)
Q Consensus 418 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 460 (558)
++.++.+|.++.+|..|+.+|...|++++|.+.|++..+.|-.
T Consensus 420 ~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~ 462 (472)
T 4g1t_A 420 KMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSL 462 (472)
T ss_dssp HHHHHHCC-CTTHHHHHHHHHHHHHHCC---------------
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC
Confidence 8888899999999999999999999999999999998876543
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.73 E-value=8.1e-17 Score=157.14 Aligned_cols=259 Identities=13% Similarity=0.013 Sum_probs=154.5
Q ss_pred CcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCC---CCcchHHHHH
Q 036003 121 DDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE---PCVVSYNAII 197 (558)
Q Consensus 121 ~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li 197 (558)
+...+..+...+... |++++|...|+++++.. +.+..++..+...|.+.|++++|...|+++.+ .+..+|..+.
T Consensus 64 ~~~~~~~~~~~~~~~--g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~ 140 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKE--GDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQPNNLKALMALA 140 (365)
T ss_dssp TCTTHHHHHHHHHHH--TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred chhHHHHHHHHHHHC--CCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHH
Confidence 334466666666666 77777777777777664 44566777777777777777777777776653 3456677777
Q ss_pred HHHHHCCCccHHHHHHHHHHHCCCCCC-----------HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCC-chhHHHH
Q 036003 198 TAYARSSRPNEALSLFRELQERNLKPT-----------DVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDK-YVKVNTA 265 (558)
Q Consensus 198 ~~~~~~g~~~~A~~~~~~m~~~~~~p~-----------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~ 265 (558)
..|...|++++|+..|+++.+. .|+ ...+..+...+...|++++|..+++++.+..... +..++..
T Consensus 141 ~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 218 (365)
T 4eqf_A 141 VSYTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTG 218 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHH
T ss_pred HHHHccccHHHHHHHHHHHHHh--CccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHH
Confidence 7777777777777777777653 222 1222334566667777777777777776664221 4556666
Q ss_pred HHHHHHhcCCHHHHHHHHhccC---CCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCC
Q 036003 266 LIDMHAKCGRLDDAVSVFDNMS---GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP-DEITFLGLLYACSHTGL 341 (558)
Q Consensus 266 l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~ 341 (558)
+...|.+.|++++|.+.|++.. ..+..+|..+..+|...|++++|+..|+++.+. .| +..++..+..+|...|+
T Consensus 219 l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~ 296 (365)
T 4eqf_A 219 LGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRSEEAVEAYTRALEI--QPGFIRSRYNLGISCINLGA 296 (365)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCC
Confidence 6677777777777777666654 224556666666666777777777777666663 23 35566666666666666
Q ss_pred hHHHHHHHHHchhhcCCC----------CChhHHHHHHHHHhhcCCHHHHHHHHH
Q 036003 342 VDEGWNYFYSMRDKYGIV----------PGIKHYGCMVDLLGRAGRLDEAYRFID 386 (558)
Q Consensus 342 ~~~a~~~~~~~~~~~~~~----------~~~~~~~~li~~~~~~g~~~~A~~~~~ 386 (558)
+++|...|+++.+...-. .+...|..+..++...|+.+.+.++..
T Consensus 297 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 351 (365)
T 4eqf_A 297 YREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANL 351 (365)
T ss_dssp CHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 666666666665421000 013445555555555555555554443
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.73 E-value=3e-16 Score=147.31 Aligned_cols=246 Identities=11% Similarity=0.069 Sum_probs=203.6
Q ss_pred HHHHHHCCCccHHHHHHHHHHHCCCCCCH--HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 036003 197 ITAYARSSRPNEALSLFRELQERNLKPTD--VTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCG 274 (558)
Q Consensus 197 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~--~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 274 (558)
|+-....|++..|+..++..... .|+. .....+..++...|+++.|...++. .-+|+...+..+...+...|
T Consensus 6 ~~~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~ 79 (291)
T 3mkr_A 6 VKNAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHS 79 (291)
T ss_dssp HHHHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCST
T ss_pred HHHHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCC
Confidence 44566789999999999876543 3443 3556678899999999999986654 24667888888999999999
Q ss_pred CHHHHHHHHhccC----CC-CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 036003 275 RLDDAVSVFDNMS----GK-DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYF 349 (558)
Q Consensus 275 ~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 349 (558)
+.++|++.++++. .| +...+..+...+.+.|++++|+..+++ ..+...+..+...+.+.|++++|.+.|
T Consensus 80 ~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~~g~~~~A~~~l 153 (291)
T 3mkr_A 80 RRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLKLDRLDLARKEL 153 (291)
T ss_dssp THHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 9999999999864 23 667788888999999999999999997 457788999999999999999999999
Q ss_pred HHchhhcCCCCChhH---HHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccC
Q 036003 350 YSMRDKYGIVPGIKH---YGCMVDLLGRAGRLDEAYRFIDEL--PIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELD 424 (558)
Q Consensus 350 ~~~~~~~~~~~~~~~---~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 424 (558)
+++.+. .|+... ...++..+...|++++|..+|+++ ..+.+...++.+..++...|++++|+..|+++++.+
T Consensus 154 ~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~ 230 (291)
T 3mkr_A 154 KKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKCSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD 230 (291)
T ss_dssp HHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 999874 354321 123345555669999999999998 334578899999999999999999999999999999
Q ss_pred CCCcccHHhHHHHHHhcCChHH-HHHHHHHHHhC
Q 036003 425 DSHGGDYVILSNLCARAGRWED-VDYLRKLMKDR 457 (558)
Q Consensus 425 ~~~~~~~~~l~~~~~~~g~~~~-A~~~~~~m~~~ 457 (558)
|.++.++..++.++...|+.++ +.++++++.+.
T Consensus 231 p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 231 SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 9999999999999999999976 57899988764
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.72 E-value=3.5e-14 Score=145.80 Aligned_cols=396 Identities=10% Similarity=0.031 Sum_probs=283.0
Q ss_pred CHHHHHHHHHhccCCchH---HHHHHHHHHhCCCCChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCC--CCcccHHHHH
Q 036003 20 NTPNALSLLPRCTSFRGL---KQIHAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE--PDIVLFNTMA 94 (558)
Q Consensus 20 ~~~~~~~ll~~~~~~~~~---~~~~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li 94 (558)
+...|..++.. .+.++. +.+++.+.+. .+.+...|..++..+.+. |++++|..+|++... |++..|...+
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~---~~~~~a~~~~~ral~~~p~~~lw~~~~ 86 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKA---KNYDKVEKLFQRCLMKVLHIDLWKCYL 86 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHTTTCCCHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcCCChHHHHHHH
Confidence 45667777764 334444 6777777654 456678999999999999 999999999999875 7777777777
Q ss_pred HHH-hcCCCchHHHH----HHHHhHHC-CCCCC-cccHHHHHHHHHh---------cCcccHHHHHHHHHHHHHhCCCCh
Q 036003 95 RGY-SRSKTPIRAIF----LFVELLNS-GLLPD-DYSFPSLLKACAC---------VGAEALEEGKQLHCFAIKLGLNSN 158 (558)
Q Consensus 95 ~~~-~~~g~~~~A~~----~~~~m~~~-g~~p~-~~~~~~ll~~~~~---------~~~~~~~~a~~~~~~~~~~g~~~~ 158 (558)
... ...|+.++|.+ +|++.... |..|+ ...|...+..... . |+++.|..+|++.++......
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~--~~~~~a~~~y~~al~~P~~~~ 164 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAEN--QRITAVRRVYQRGCVNPMINI 164 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHH--HHHHHHHHHHHHHTTSCCTTH
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHH--hHHHHHHHHHHHHHhchhhhH
Confidence 533 35678877765 77776543 65554 4456666655443 4 889999999999987321112
Q ss_pred HHHHHHHHHHH-------------HhCCChHHHHHHHhc-------cCC------CC--------cchHHHHHHHHHHC-
Q 036003 159 LYVCTTLINLY-------------AECSDVEAARRIFEN-------ISE------PC--------VVSYNAIITAYARS- 203 (558)
Q Consensus 159 ~~~~~~ll~~~-------------~~~g~~~~A~~~~~~-------~~~------~~--------~~~~~~li~~~~~~- 203 (558)
...|....... .+.+++..|..++.. +.. |+ ...|...+......
T Consensus 165 ~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~ 244 (530)
T 2ooe_A 165 EQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNP 244 (530)
T ss_dssp HHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCC
Confidence 23443322211 134567777776654 111 22 23455555433332
Q ss_pred ---CCc----cHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc-------cCChH-------HHHHHHHHHHHhCCCCchhH
Q 036003 204 ---SRP----NEALSLFRELQERNLKPTDVTMLSALSSCAL-------LGSLD-------LGKWIHEYIKKYGLDKYVKV 262 (558)
Q Consensus 204 ---g~~----~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~-------~~~~~-------~a~~~~~~~~~~~~~~~~~~ 262 (558)
++. .+|..+|++.... .+-+...|......+.+ .|+++ +|..++++..+.-.+.+...
T Consensus 245 ~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l 323 (530)
T 2ooe_A 245 LRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLL 323 (530)
T ss_dssp SCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHH
T ss_pred ccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHH
Confidence 232 3778889988875 24466777777777765 79987 89999999886323556888
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCC--C-CH-HhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH-HHH
Q 036003 263 NTALIDMHAKCGRLDDAVSVFDNMSG--K-DT-QAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLY-ACS 337 (558)
Q Consensus 263 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~-~~~ 337 (558)
|..++..+.+.|++++|..+|+++.+ + +. ..|...+..+.+.|+.++|..+|++..+... .+...|..... .+.
T Consensus 324 ~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~-~~~~~~~~~a~~~~~ 402 (530)
T 2ooe_A 324 YFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYY 402 (530)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTT-CCTHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccC-CchHHHHHHHHHHHH
Confidence 99999999999999999999998763 3 33 5799999999999999999999999988521 12233332222 234
Q ss_pred ccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC--HHHHHHHHHHHHhcCCHH
Q 036003 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL----PIKST--PILWRTLLSSCSSHNNLG 411 (558)
Q Consensus 338 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~ 411 (558)
..|++++|..+|+...+. .+.+...|..++..+.+.|+.++|..+|++. +..|+ ...|...+......|+.+
T Consensus 403 ~~~~~~~A~~~~e~al~~--~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~ 480 (530)
T 2ooe_A 403 CSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLA 480 (530)
T ss_dssp HTCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHH
T ss_pred HcCChhHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHH
Confidence 689999999999999874 2446789999999999999999999999987 22332 458888888889999999
Q ss_pred HHHHHHHHHHccCCC
Q 036003 412 LAKQVIERIFELDDS 426 (558)
Q Consensus 412 ~a~~~~~~~~~~~~~ 426 (558)
.+..+++++.+..|.
T Consensus 481 ~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 481 SILKVEKRRFTAFRE 495 (530)
T ss_dssp HHHHHHHHHHHHTHH
T ss_pred HHHHHHHHHHHHCch
Confidence 999999999988774
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.71 E-value=7.4e-14 Score=149.26 Aligned_cols=374 Identities=10% Similarity=0.047 Sum_probs=281.8
Q ss_pred HHHHHhccCCchHHHHHHHHHHhCCCC-----ChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCCCCcccHHHHHHHHhc
Q 036003 25 LSLLPRCTSFRGLKQIHAVTIKTHLQN-----DLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSR 99 (558)
Q Consensus 25 ~~ll~~~~~~~~~~~~~~~~~~~g~~~-----~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~ 99 (558)
....+++...+....+.+.+.+.-+.| +....+.|+....+. +..+.....++...-+ ...+...+..
T Consensus 989 s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka----D~~Rv~eyI~kLd~~d---~~eIA~Iai~ 1061 (1630)
T 1xi4_A 989 SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA----DRTRVMEYINRLDNYD---APDIANIAIS 1061 (1630)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh----ChhhHHHHHHHhhhcc---HHHHHHHHHh
Confidence 344555555555533333333322333 346777777766665 3344444444443322 4557888899
Q ss_pred CCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHH
Q 036003 100 SKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAAR 179 (558)
Q Consensus 100 ~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~ 179 (558)
.|.+++|..+|++.. -.....+.++. .. +++++|.++.++. -+..+|..+..++.+.|++++|.
T Consensus 1062 lglyEEAf~IYkKa~-----~~~~A~~VLie---~i--~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~kEAI 1125 (1630)
T 1xi4_A 1062 NELFEEAFAIFRKFD-----VNTSAVQVLIE---HI--GNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMVKEAI 1125 (1630)
T ss_pred CCCHHHHHHHHHHcC-----CHHHHHHHHHH---HH--hhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCHHHHH
Confidence 999999999999862 12223344444 34 8999999998865 35788999999999999999999
Q ss_pred HHHhccCCCCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCc
Q 036003 180 RIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKY 259 (558)
Q Consensus 180 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 259 (558)
+.|.+. .|...|..++.++.+.|++++|.+.|....+.. ++....+.++.+|++.++++....+. + .++
T Consensus 1126 dsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~fI----~---~~n 1194 (1630)
T 1xi4_A 1126 DSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEEFI----N---GPN 1194 (1630)
T ss_pred HHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHHHH----h---CCC
Confidence 999775 677889999999999999999999999877653 44333445899999999988655443 2 345
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 036003 260 VKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHT 339 (558)
Q Consensus 260 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 339 (558)
...+..+...|...|++++|..+|... ..|..+..+|.+.|++++|.+.+++. .+..+|..+-.+|...
T Consensus 1195 ~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~acve~ 1263 (1630)
T 1xi4_A 1195 NAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDG 1263 (1630)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHHhhh
Confidence 566667999999999999999999985 58999999999999999999999986 3568899999999999
Q ss_pred CChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh--cCCHHHHHH
Q 036003 340 GLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSS--HNNLGLAKQ 415 (558)
Q Consensus 340 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~--~g~~~~a~~ 415 (558)
|++..|......+ ..+...+..++..|.+.|.+++|+.+++.. +..+ ....|.-+...+++ -++..++.+
T Consensus 1264 ~Ef~LA~~cgl~I------iv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmEhlk 1337 (1630)
T 1xi4_A 1264 KEFRLAQMCGLHI------VVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMREHLE 1337 (1630)
T ss_pred hHHHHHHHHHHhh------hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHHHHH
Confidence 9999998876543 346778889999999999999999999876 4333 44567666666665 457777778
Q ss_pred HHHHHHccCC-----CCcccHHhHHHHHHhcCChHHHHH
Q 036003 416 VIERIFELDD-----SHGGDYVILSNLCARAGRWEDVDY 449 (558)
Q Consensus 416 ~~~~~~~~~~-----~~~~~~~~l~~~~~~~g~~~~A~~ 449 (558)
+|..-....| .+...|.-++..|.+.|+|+.|..
T Consensus 1338 ~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1338 LFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 8777666554 556779999999999999999984
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.70 E-value=1.3e-15 Score=145.87 Aligned_cols=274 Identities=10% Similarity=-0.038 Sum_probs=168.0
Q ss_pred CcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHH
Q 036003 86 DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTL 165 (558)
Q Consensus 86 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~l 165 (558)
+...|..+...+...|++++|+.+|+++.+... .+...+..+...+... |++++|...++++.+.. +.+..++..+
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~--~~~~~A~~~~~~a~~~~-~~~~~~~~~l 95 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAP-EREEAWRSLGLTQAEN--EKDGLAIIALNHARMLD-PKDIAVHAAL 95 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHhcC-cCCHHHHHHH
Confidence 445566677777777788888888777766432 2455666666666666 77777777777777764 3455666666
Q ss_pred HHHHHhCCChHHHHHHHhccCC--C-CcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHH--HHhccCC
Q 036003 166 INLYAECSDVEAARRIFENISE--P-CVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALS--SCALLGS 240 (558)
Q Consensus 166 l~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~--~~~~~~~ 240 (558)
...|...|++++|...|+++.+ | +...+..+... .|+......+.. .+...|+
T Consensus 96 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~ 153 (327)
T 3cv0_A 96 AVSHTNEHNANAALASLRAWLLSQPQYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNE 153 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTSTTTTTC------------------------------------------CCTTSHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHccc
Confidence 7777777777777777666543 1 11112111000 011111111112 2555666
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHHhHHHHHHHHHHCCChHHHHHHHHHH
Q 036003 241 LDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS---GKDTQAWSAMIVAYATHGQGHKSILMFEEM 317 (558)
Q Consensus 241 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 317 (558)
+++|..+++++.+.. +.+...+..+...|.+.|++++|.+.|+++. ..+..+|..+...+...|++++|...|+++
T Consensus 154 ~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 232 (327)
T 3cv0_A 154 YRECRTLLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELRPDDAQLWNKLGATLANGNRPQEALDAYNRA 232 (327)
T ss_dssp HHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666666666666554 2345566666667777777777777776654 225566777777777777777777777777
Q ss_pred HHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCC-----------ChhHHHHHHHHHhhcCCHHHHHHHHH
Q 036003 318 MKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVP-----------GIKHYGCMVDLLGRAGRLDEAYRFID 386 (558)
Q Consensus 318 ~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-----------~~~~~~~li~~~~~~g~~~~A~~~~~ 386 (558)
.+.. +.+...+..+...+...|++++|.+.++++... .... +...+..+..++.+.|++++|..+++
T Consensus 233 ~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~-~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 233 LDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYM-QVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-HTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred HHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh-CCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 6642 224566777777777778888887777777653 1110 35677777788888888888877776
Q ss_pred hC
Q 036003 387 EL 388 (558)
Q Consensus 387 ~~ 388 (558)
+.
T Consensus 311 ~~ 312 (327)
T 3cv0_A 311 QN 312 (327)
T ss_dssp CC
T ss_pred HH
Confidence 54
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.68 E-value=3.1e-17 Score=169.69 Aligned_cols=151 Identities=15% Similarity=0.119 Sum_probs=124.2
Q ss_pred CCChHHHHHHHHHHHHhCCChHHHHHHHhccC-------CCCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHH
Q 036003 155 LNSNLYVCTTLINLYAECSDVEAARRIFENIS-------EPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVT 227 (558)
Q Consensus 155 ~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~ 227 (558)
...-..+||+||++|++.|++++|.++|++|. .||++|||+||.+|++.|++++|.++|++|.+.|+.||..|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 34456799999999999999999999997764 48999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhccCCh-HHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-----CHHhHHHHHHHH
Q 036003 228 MLSALSSCALLGSL-DLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK-----DTQAWSAMIVAY 301 (558)
Q Consensus 228 ~~~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----~~~~~~~li~~~ 301 (558)
|+++|.++++.|+. +.|.++|++|.+.|+.||..+|++++....+.+-++.+.++...+..+ .+.+...|...|
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~ 282 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVY 282 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHH
Confidence 99999999999985 789999999999999999999999998887765555555554444321 123334445555
Q ss_pred HHCC
Q 036003 302 ATHG 305 (558)
Q Consensus 302 ~~~~ 305 (558)
.+.+
T Consensus 283 s~d~ 286 (1134)
T 3spa_A 283 AKDG 286 (1134)
T ss_dssp CCCS
T ss_pred ccCC
Confidence 5444
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.67 E-value=5.9e-15 Score=135.94 Aligned_cols=218 Identities=7% Similarity=-0.041 Sum_probs=162.3
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC---C-------HHhHHH
Q 036003 227 TMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK---D-------TQAWSA 296 (558)
Q Consensus 227 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~-------~~~~~~ 296 (558)
.+..+...+...|++++|..+++++.+.. .+...+..+..+|...|++++|...|++..+. + ..+|..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 44445555555566666666666555554 44555555666666666666666666655421 1 456777
Q ss_pred HHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcC
Q 036003 297 MIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAG 376 (558)
Q Consensus 297 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 376 (558)
+...|...|++++|+..|++..+. .|+. ..+...|++++|...++.+.. ..+.+...+..+...+...|
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~ 153 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAY--VNPEKAEEARLEGKEYFTKS 153 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHH--CCHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHH--cCcchHHHHHHHHHHHHHhc
Confidence 888888888888888888888873 4553 345566788899998888875 33345677888888899999
Q ss_pred CHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHH
Q 036003 377 RLDEAYRFIDEL-P-IKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLM 454 (558)
Q Consensus 377 ~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 454 (558)
++++|.+.|++. . .+.+..+|..+...+...|++++|...++++++..|.++.+|..++.+|.+.|++++|...+++.
T Consensus 154 ~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 233 (258)
T 3uq3_A 154 DWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAA 233 (258)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 999999999887 2 23467888899999999999999999999999999999999999999999999999999999988
Q ss_pred HhC
Q 036003 455 KDR 457 (558)
Q Consensus 455 ~~~ 457 (558)
.+.
T Consensus 234 ~~~ 236 (258)
T 3uq3_A 234 RTK 236 (258)
T ss_dssp HHH
T ss_pred HHh
Confidence 764
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.66 E-value=1.1e-16 Score=165.73 Aligned_cols=127 Identities=12% Similarity=0.085 Sum_probs=97.3
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhccC-------CCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHH
Q 036003 257 DKYVKVNTALIDMHAKCGRLDDAVSVFDNMS-------GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITF 329 (558)
Q Consensus 257 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 329 (558)
..-..+||+||++|++.|++++|.++|+.|. .+|+.+||+||.+||+.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3345677888888888888888888876653 458888888888888888888888888888888888888888
Q ss_pred HHHHHHHHccCCh-HHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHH
Q 036003 330 LGLLYACSHTGLV-DEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRF 384 (558)
Q Consensus 330 ~~ll~~~~~~g~~-~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~ 384 (558)
+++|.++++.|+. ++|.++|++|.++ |+.||..+|++++....+.+-++.+.++
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv 258 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKV 258 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGG
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHh
Confidence 8888888888874 6788888888886 8888888888888776665444443333
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.64 E-value=8.5e-15 Score=134.89 Aligned_cols=233 Identities=9% Similarity=-0.026 Sum_probs=164.1
Q ss_pred hHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCC--Cc----hhHHHH
Q 036003 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLD--KY----VKVNTA 265 (558)
Q Consensus 192 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~--~~----~~~~~~ 265 (558)
.|..+...+...|++++|+..|++..+.. .+...+..+..++...|++++|...++++.+.... ++ ..++..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 45556666667777777777777666654 55666666777777777777777777766654211 11 456666
Q ss_pred HHHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHH
Q 036003 266 LIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP-DEITFLGLLYACSHTGLVDE 344 (558)
Q Consensus 266 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~ 344 (558)
+...|.+.|++++|...|++..+.+.. ...+...|++++|...++++... .| +...+..+...+...|++++
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~~~~-----~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~ 157 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTEHRT-----ADILTKLRNAEKELKKAEAEAYV--NPEKAEEARLEGKEYFTKSDWPN 157 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCCC-----HHHHHHHHHHHHHHHHHHHHHHC--CHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCch-----hHHHHHHhHHHHHHHHHHHHHHc--CcchHHHHHHHHHHHHHhcCHHH
Confidence 777777777777777777766532111 23455667788888888888774 33 34567777778888888888
Q ss_pred HHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 036003 345 GWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIK-STPILWRTLLSSCSSHNNLGLAKQVIERIFE 422 (558)
Q Consensus 345 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 422 (558)
|...++++... .+.+...+..+...|.+.|++++|.+.|++. ... .+...|..+..++...|++++|.+.++++++
T Consensus 158 A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 158 AVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 88888888763 3446778888888888999999998888887 223 3577888899999999999999999999988
Q ss_pred cC------CCCcccHHhHH
Q 036003 423 LD------DSHGGDYVILS 435 (558)
Q Consensus 423 ~~------~~~~~~~~~l~ 435 (558)
.. |.+...+..+.
T Consensus 236 ~~~~~~~~p~~~~~~~~l~ 254 (258)
T 3uq3_A 236 KDAEVNNGSSAREIDQLYY 254 (258)
T ss_dssp HHHHHHTTTTHHHHHHHHH
T ss_pred hChhhcCCCchHHHHHHHH
Confidence 87 66555444443
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.63 E-value=1.3e-14 Score=130.10 Aligned_cols=195 Identities=14% Similarity=0.033 Sum_probs=150.4
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCC-CHHHHHHH
Q 036003 257 DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSG---KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP-DEITFLGL 332 (558)
Q Consensus 257 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l 332 (558)
+++...+..+...+.+.|++++|...|++..+ .+...|..+...+.+.|++++|+..|++..+. .| +...+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVAR--TPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCcHHHHHHH
Confidence 45566777788888888888888888887653 36777888888888888888998888888874 34 45677788
Q ss_pred HHHHHcc-----------CChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHH
Q 036003 333 LYACSHT-----------GLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKSTPILWRTL 400 (558)
Q Consensus 333 l~~~~~~-----------g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l 400 (558)
..++... |++++|...|++..+. -+.+...+..+...|...|++++|+..|++. ....++..+..+
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~l 157 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV--NPRYAPLHLQRGLVYALLGERDKAEASLKQALALEDTPEIRSAL 157 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCHHHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcccchHHHHHH
Confidence 8888888 9999999999999863 2345778889999999999999999999987 212788899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHH
Q 036003 401 LSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMK 455 (558)
Q Consensus 401 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 455 (558)
..++...|++++|...|+++++.+|.++..+..++.++.+.|++++|...+++..
T Consensus 158 a~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 158 AELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999999999999999999999999999999999988654
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.62 E-value=2.5e-14 Score=143.26 Aligned_cols=378 Identities=11% Similarity=-0.011 Sum_probs=244.9
Q ss_pred HHHHhhcCCCCCCHHHHHHHHccCCC-CCcccHHHHHHHHhcCCCc---hHHHHHHHHhHHCCCCCCcccHHHHHHHHHh
Q 036003 59 LINFCTQNPTTSSMEHAHLLFDRIPE-PDIVLFNTMARGYSRSKTP---IRAIFLFVELLNSGLLPDDYSFPSLLKACAC 134 (558)
Q Consensus 59 li~~~~~~~~~~~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~---~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~ 134 (558)
+...+.+. |++++|.++|++..+ .+...+..|...|...|++ ++|+.+|++..+. +...+..+-..+..
T Consensus 9 la~~~~~~---g~~~~A~~~~~~aa~~g~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~ 81 (452)
T 3e4b_A 9 LANEALKR---GDTVTAQQNYQQLAELGYSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAA 81 (452)
T ss_dssp HHHHHHHH---HHHHHHHHHHHHHHHHTCCTGGGTCC--------------------------------CHHHHHHHHHT
T ss_pred HHHHHHhC---CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHh
Confidence 45566667 899999999987654 3556666677777777888 8999999888754 44555555554444
Q ss_pred cC---cccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHH---HHHHHhccCC-CCcchHHHHHHHHHHCCCcc
Q 036003 135 VG---AEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEA---ARRIFENISE-PCVVSYNAIITAYARSSRPN 207 (558)
Q Consensus 135 ~~---~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~---A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~ 207 (558)
.+ .++.++|...|++..+.|.. ..+..|...|...+..+. +.+.+..... .+...+..|...|...+.++
T Consensus 82 ~~~~~~~~~~~A~~~~~~Aa~~g~~---~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~ 158 (452)
T 3e4b_A 82 KPGATEAEHHEAESLLKKAFANGEG---NTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYD 158 (452)
T ss_dssp C--CCHHHHHHHHHHHHHHHHTTCS---SCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGG
T ss_pred CCCCCCcCHHHHHHHHHHHHHCCCH---HHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcc
Confidence 41 13788999999999887732 256667777777665443 3333333332 46677888888888888666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC---ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc----CCHHHHH
Q 036003 208 EALSLFRELQERNLKPTDVTMLSALSSCALLG---SLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKC----GRLDDAV 280 (558)
Q Consensus 208 ~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~ 280 (558)
++........+.-...+...+..+...|...| +.++|..+|++..+.| +++...+..|..+|... +++++|.
T Consensus 159 ~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g-~~~a~~~~~Lg~~y~~g~~~~~d~~~A~ 237 (452)
T 3e4b_A 159 QHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRG-TVTAQRVDSVARVLGDATLGTPDEKTAQ 237 (452)
T ss_dssp GGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTT-CSCHHHHHHHHHHHTCGGGSSCCHHHHH
T ss_pred cCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHhCCCCCCCCHHHHH
Confidence 66555433332212223337777888888888 8899999999998887 34444445577777665 7899999
Q ss_pred HHHhccCCCCHHhHHHHHHH-H--HHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC-----ChHHHHHHHHHc
Q 036003 281 SVFDNMSGKDTQAWSAMIVA-Y--ATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTG-----LVDEGWNYFYSM 352 (558)
Q Consensus 281 ~~~~~~~~~~~~~~~~li~~-~--~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-----~~~~a~~~~~~~ 352 (558)
.+|++....+...+..+... | ...+++++|+.+|++..+.| +...+..|...|. .| ++++|...|++.
T Consensus 238 ~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A~~~~~~A 313 (452)
T 3e4b_A 238 ALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAAEAHFEKA 313 (452)
T ss_dssp HHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHHHHHHHTT
T ss_pred HHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHHHHHHHHH
Confidence 99998883377778888777 4 46789999999999999877 5666767777666 55 899999999887
Q ss_pred hhhcCCCCChhHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHccC
Q 036003 353 RDKYGIVPGIKHYGCMVDLLGR----AGRLDEAYRFIDELPIKSTPILWRTLLSSCSS----HNNLGLAKQVIERIFELD 424 (558)
Q Consensus 353 ~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 424 (558)
. .-+...+..|...|.. ..++++|.++|++.-...+......|...|.. ..+.++|...|+++.+.+
T Consensus 314 a-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g 388 (452)
T 3e4b_A 314 V-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNSADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQD 388 (452)
T ss_dssp T-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTC
T ss_pred h-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCC
Confidence 6 3466777778877776 44899999999987334455666777777764 458999999999999988
Q ss_pred CCCcccHHhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 425 DSHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 425 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
++........+......++..+|..+.++..+
T Consensus 389 ~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 389 TPEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 65433333333222333456777777776654
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.62 E-value=2.9e-14 Score=132.73 Aligned_cols=241 Identities=10% Similarity=-0.082 Sum_probs=185.6
Q ss_pred HCCCccHHHHHHHHHHHCCCC---CCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 036003 202 RSSRPNEALSLFRELQERNLK---PTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDD 278 (558)
Q Consensus 202 ~~g~~~~A~~~~~~m~~~~~~---p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 278 (558)
..|++++|+..|+++.+.... .+...+..+...+...|++++|...++++.+.. +.+..++..+..+|...|++++
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHH
Confidence 346788888888888775321 134567778888888888888888888888775 3457778888888999999999
Q ss_pred HHHHHhccCC---CCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhh
Q 036003 279 AVSVFDNMSG---KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDK 355 (558)
Q Consensus 279 A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 355 (558)
|.+.|++..+ .+..+|..+...|...|++++|...|+++.+. .|+.......+..+...|++++|...++.....
T Consensus 96 A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~ 173 (275)
T 1xnf_A 96 AYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 173 (275)
T ss_dssp HHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 9998888763 36778899999999999999999999999884 455555555555667779999999999888763
Q ss_pred cCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcc
Q 036003 356 YGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKST-----PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGG 429 (558)
Q Consensus 356 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 429 (558)
.+++...+ .++..+...++.++|.+.+++. ...|. ..++..+...+...|++++|...|+++++.+|.+..
T Consensus 174 --~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~ 250 (275)
T 1xnf_A 174 --SDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFV 250 (275)
T ss_dssp --SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCH
T ss_pred --CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHH
Confidence 33444444 4777788888999999999886 33332 477888999999999999999999999999987643
Q ss_pred cHHhHHHHHHhcCChHHHHHHH
Q 036003 430 DYVILSNLCARAGRWEDVDYLR 451 (558)
Q Consensus 430 ~~~~l~~~~~~~g~~~~A~~~~ 451 (558)
....++...|++++|.+.+
T Consensus 251 ---~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 251 ---EHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp ---HHHHHHHHHHHHHHC----
T ss_pred ---HHHHHHHHHHHHHhhHHHH
Confidence 4466778889999888765
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.60 E-value=4.1e-14 Score=131.59 Aligned_cols=243 Identities=10% Similarity=-0.003 Sum_probs=131.1
Q ss_pred HHHHHHHHHhCCChHHHHHHHhccCC---CCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCC--HHHHHHHHHHHh
Q 036003 162 CTTLINLYAECSDVEAARRIFENISE---PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPT--DVTMLSALSSCA 236 (558)
Q Consensus 162 ~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~--~~~~~~ll~~~~ 236 (558)
+......+...|++++|...|++..+ .+...|..+...|...|++++|+..+++..+.+-.|+ ...|..+...+.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 33445566666666666666666543 2334566666666666666666666666655321111 223555566666
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC---CHHhHHHHHHHHHHCCChHHHHHH
Q 036003 237 LLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK---DTQAWSAMIVAYATHGQGHKSILM 313 (558)
Q Consensus 237 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~ 313 (558)
..|++++|...++++.+.. +.+..++..+...|...|++++|...|++..+. +...|..+...+...+++++|...
T Consensus 86 ~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 164 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPTTTDPKVFYELGQAYYYNKEYVKADSS 164 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSSCCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcCCCcHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6666666666666665543 223445555555555666666666555555432 333444444222223355555555
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCC---HHHHHHHHHhC--
Q 036003 314 FEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGR---LDEAYRFIDEL-- 388 (558)
Q Consensus 314 ~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~-- 388 (558)
|++..+. .|+ +...+..+...+...|+ +++|...+++.
T Consensus 165 ~~~a~~~--~p~-----------------------------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~ 207 (272)
T 3u4t_A 165 FVKVLEL--KPN-----------------------------------IYIGYLWRARANAAQDPDTKQGLAKPYYEKLIE 207 (272)
T ss_dssp HHHHHHH--STT-----------------------------------CHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHH
T ss_pred HHHHHHh--Ccc-----------------------------------chHHHHHHHHHHHHcCcchhhHHHHHHHHHHHH
Confidence 5554442 122 23333344444444443 33344443333
Q ss_pred --CCCCC------HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcC
Q 036003 389 --PIKST------PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAG 442 (558)
Q Consensus 389 --~~~~~------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 442 (558)
...|+ ..+|..+...|...|++++|.+.++++++.+|.++.++..+.......+
T Consensus 208 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 208 VCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 11122 2466778888888999999999999999999988877777666554443
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.58 E-value=1e-12 Score=122.32 Aligned_cols=219 Identities=12% Similarity=-0.027 Sum_probs=118.7
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhccCCC-CHHhHHHHHHHHHH
Q 036003 229 LSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAK----CGRLDDAVSVFDNMSGK-DTQAWSAMIVAYAT 303 (558)
Q Consensus 229 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~ 303 (558)
..+...+...|++++|..+|++..+. -+...+..+...|.. .+++++|...|++..+. +..++..+...|..
T Consensus 10 ~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~ 86 (273)
T 1ouv_A 10 VGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYS 86 (273)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhC
Confidence 33333344444444444444444431 122333334444444 44444444444443322 34445555555555
Q ss_pred ----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhh-
Q 036003 304 ----HGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSH----TGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR- 374 (558)
Q Consensus 304 ----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~- 374 (558)
.+++++|+..|++..+.+ +...+..+...|.. .+++++|...|++..+. + +...+..+...|..
T Consensus 87 g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~ 159 (273)
T 1ouv_A 87 GQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAG 159 (273)
T ss_dssp TSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHT
T ss_pred CCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcC
Confidence 555566666666555543 44555555555555 56666666666665542 2 34455555555555
Q ss_pred ---cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHh----cCC
Q 036003 375 ---AGRLDEAYRFIDELPIKSTPILWRTLLSSCSS----HNNLGLAKQVIERIFELDDSHGGDYVILSNLCAR----AGR 443 (558)
Q Consensus 375 ---~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~ 443 (558)
.+++++|.+.|++.-...+...+..+...|.. .+++++|...++++.+.++ +..+..+..+|.. .++
T Consensus 160 ~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~ 237 (273)
T 1ouv_A 160 RGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRN 237 (273)
T ss_dssp SSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCC
T ss_pred CCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccC
Confidence 66666666666655212345556666666666 6777777777777766654 3556666666666 677
Q ss_pred hHHHHHHHHHHHhCCC
Q 036003 444 WEDVDYLRKLMKDRGV 459 (558)
Q Consensus 444 ~~~A~~~~~~m~~~g~ 459 (558)
+++|.+.+++..+.|.
T Consensus 238 ~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 238 EKQAIENFKKGCKLGA 253 (273)
T ss_dssp STTHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHHHcCC
Confidence 7777777776665543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.57 E-value=2.6e-13 Score=135.85 Aligned_cols=345 Identities=11% Similarity=0.001 Sum_probs=235.9
Q ss_pred HHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccH---HHHHHHHHHHHHhCCCChHHHHHHHHHH
Q 036003 92 TMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEAL---EEGKQLHCFAIKLGLNSNLYVCTTLINL 168 (558)
Q Consensus 92 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~---~~a~~~~~~~~~~g~~~~~~~~~~ll~~ 168 (558)
.+...+.+.|++++|+++|++..+.|. ...+..+-..+... |+. ++|...|++..+. +...+..|...
T Consensus 8 ~la~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~--g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~ 78 (452)
T 3e4b_A 8 RLANEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGT--RDPAQIKQAEATYRAAADT----SPRAQARLGRL 78 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC----------------------------------CHHHHHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHcc--CCCCCHHHHHHHHHHHHhC----CHHHHHHHHHH
Confidence 356677888999999999999988763 33344444444444 667 8999999998864 55556667775
Q ss_pred HHhCC-----ChHHHHHHHhccCC-CCcchHHHHHHHHHHCCCcc---HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 036003 169 YAECS-----DVEAARRIFENISE-PCVVSYNAIITAYARSSRPN---EALSLFRELQERNLKPTDVTMLSALSSCALLG 239 (558)
Q Consensus 169 ~~~~g-----~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~g~~~---~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 239 (558)
+...+ +.++|...|++..+ .+...+..|...|...+... ++.+.+......|. ......+...|...+
T Consensus 79 ~~~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~ 155 (452)
T 3e4b_A 79 LAAKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQG 155 (452)
T ss_dssp HHTC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHT
T ss_pred HHhCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCC
Confidence 65655 78899999988765 45567888888888876544 45555555555442 345556667777777
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC---CHHHHHHHHhccCCC---CHHhHHHHHHHHHHC----CChHH
Q 036003 240 SLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCG---RLDDAVSVFDNMSGK---DTQAWSAMIVAYATH----GQGHK 309 (558)
Q Consensus 240 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~----~~~~~ 309 (558)
.++++......+.+.-...+...+..|..+|.+.| +.++|++.|++..+. +...+..+...|... +++++
T Consensus 156 ~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~ 235 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKT 235 (452)
T ss_dssp CGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHH
T ss_pred CcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHH
Confidence 55555444333333322334447778999999999 999999999987643 444456777777654 78999
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHH-H--HccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcC-----CHHHH
Q 036003 310 SILMFEEMMKAQVSPDEITFLGLLYA-C--SHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAG-----RLDEA 381 (558)
Q Consensus 310 a~~~~~~m~~~g~~p~~~~~~~ll~~-~--~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-----~~~~A 381 (558)
|+.+|++.. .| +...+..|... + ...+++++|...|++..+. + +...+..|...|. .| ++++|
T Consensus 236 A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A 306 (452)
T 3e4b_A 236 AQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAA 306 (452)
T ss_dssp HHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred HHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence 999999988 43 44455555555 3 5689999999999999874 4 6777788888887 55 99999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHh----cCChHHHHHHHHH
Q 036003 382 YRFIDELPIKSTPILWRTLLSSCSS----HNNLGLAKQVIERIFELDDSHGGDYVILSNLCAR----AGRWEDVDYLRKL 453 (558)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 453 (558)
.++|++.- ..++..+..|...|.. ..++++|...|+++.+.+. +.....|+.+|.. ..+.++|...|++
T Consensus 307 ~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~--~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 383 (452)
T 3e4b_A 307 EAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ--NSADFAIAQLFSQGKGTKPDPLNAYVFSQL 383 (452)
T ss_dssp HHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC--TTHHHHHHHHHHSCTTBCCCHHHHHHHHHH
T ss_pred HHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh--HHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 99999998 7788888888888876 3499999999999988664 5678888888874 4589999999999
Q ss_pred HHhCCCc
Q 036003 454 MKDRGVL 460 (558)
Q Consensus 454 m~~~g~~ 460 (558)
..+.|..
T Consensus 384 A~~~g~~ 390 (452)
T 3e4b_A 384 AKAQDTP 390 (452)
T ss_dssp HHTTCCH
T ss_pred HHHCCCH
Confidence 9888764
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.57 E-value=9.4e-13 Score=122.52 Aligned_cols=226 Identities=8% Similarity=-0.080 Sum_probs=174.2
Q ss_pred CcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc----cCChHHHHHHHHHHHHhCCCCchhHHH
Q 036003 189 CVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCAL----LGSLDLGKWIHEYIKKYGLDKYVKVNT 264 (558)
Q Consensus 189 ~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 264 (558)
+..++..+...|...|++++|+..|++..+. -+...+..+...+.. .+++++|..+|++..+.+ +...+.
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~ 78 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCH 78 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 3445666667777777777777777777663 244566666677777 778888888888777765 556666
Q ss_pred HHHHHHHh----cCCHHHHHHHHhccCCC-CHHhHHHHHHHHHH----CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036003 265 ALIDMHAK----CGRLDDAVSVFDNMSGK-DTQAWSAMIVAYAT----HGQGHKSILMFEEMMKAQVSPDEITFLGLLYA 335 (558)
Q Consensus 265 ~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 335 (558)
.+...|.. .+++++|...|++..+. +..++..+...|.. .+++++|+..|++..+.+ +...+..+...
T Consensus 79 ~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 79 LLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 77777777 88888888888776543 66778888888888 889999999999988865 55667777777
Q ss_pred HHc----cCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhh----cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh-
Q 036003 336 CSH----TGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR----AGRLDEAYRFIDELPIKSTPILWRTLLSSCSS- 406 (558)
Q Consensus 336 ~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~- 406 (558)
+.. .+++++|...|++..+. + +...+..+...|.. .+++++|.+.|++.-...+...+..+...|..
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g 231 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELENGGGCFNLGAMQYNG 231 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcC
Confidence 777 88999999999988864 2 56777888888888 99999999999887222347778888888988
Q ss_pred ---cCCHHHHHHHHHHHHccCCCC
Q 036003 407 ---HNNLGLAKQVIERIFELDDSH 427 (558)
Q Consensus 407 ---~g~~~~a~~~~~~~~~~~~~~ 427 (558)
.+++++|.+.|+++.+.+|++
T Consensus 232 ~~~~~~~~~A~~~~~~a~~~~~~~ 255 (273)
T 1ouv_A 232 EGVTRNEKQAIENFKKGCKLGAKG 255 (273)
T ss_dssp SSSSCCSTTHHHHHHHHHHHTCHH
T ss_pred CCcccCHHHHHHHHHHHHHcCCHH
Confidence 899999999999999988764
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.55 E-value=9.3e-13 Score=120.85 Aligned_cols=134 Identities=10% Similarity=-0.068 Sum_probs=64.8
Q ss_pred hHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHH
Q 036003 293 AWSAMIVAYATHGQGHKSILMFEEMMKAQVSPD-EITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDL 371 (558)
Q Consensus 293 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 371 (558)
.|..+...|...|++++|...++++.+.+..|+ ...+..+...+...|++++|...++++.+. .+.+...+..+...
T Consensus 107 ~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~la~~ 184 (252)
T 2ho1_A 107 VLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRL--NRNQPSVALEMADL 184 (252)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CcccHHHHHHHHHH
Confidence 333444444444444444444444444222232 234444444555555555555555555432 12234445555555
Q ss_pred HhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCc
Q 036003 372 LGRAGRLDEAYRFIDEL-PIK-STPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHG 428 (558)
Q Consensus 372 ~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 428 (558)
+...|++++|..+++++ ... .+...+..+...+...|++++|.+.++++.+..|.++
T Consensus 185 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p~~~ 243 (252)
T 2ho1_A 185 LYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYPGSL 243 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSH
T ss_pred HHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCCH
Confidence 55555555555555554 112 2344455555555555666666666666655555543
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.55 E-value=4.6e-13 Score=119.85 Aligned_cols=193 Identities=15% Similarity=0.074 Sum_probs=94.5
Q ss_pred cchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHH
Q 036003 190 VVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDM 269 (558)
Q Consensus 190 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 269 (558)
...+..+...+.+.|++++|+..|++..+.. +.+...+..+..++.+.|++++|...+++..+.. +.+...+..+..+
T Consensus 5 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~ 82 (217)
T 2pl2_A 5 EQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSEA 82 (217)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHH
Confidence 3344555555555555555555555555432 2344455555555555555555555555555543 2234444455555
Q ss_pred HHhc-----------CCHHHHHHHHhccCC---CCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036003 270 HAKC-----------GRLDDAVSVFDNMSG---KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYA 335 (558)
Q Consensus 270 ~~~~-----------g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 335 (558)
+.+. |++++|+..|++..+ .+...|..+...+...|++++|+..|++..+.. .+...+..+..+
T Consensus 83 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~ 160 (217)
T 2pl2_A 83 YVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAEL 160 (217)
T ss_dssp HHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHH
Confidence 5555 555555555554431 234455555555555566666666665555544 445555555555
Q ss_pred HHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 036003 336 CSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL 388 (558)
Q Consensus 336 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 388 (558)
+...|++++|...|++..+. -+.+...+..+...+.+.|++++|...|++.
T Consensus 161 ~~~~g~~~~A~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 161 YLSMGRLDEALAQYAKALEQ--APKDLDLRVRYASALLLKGKAEEAARAAALE 211 (217)
T ss_dssp HHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTC--------------
T ss_pred HHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 55566666666666555542 2233445555555555555555555555543
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.54 E-value=7.9e-13 Score=128.29 Aligned_cols=243 Identities=14% Similarity=0.110 Sum_probs=144.1
Q ss_pred HHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC-hHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 036003 193 YNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGS-LDLGKWIHEYIKKYGLDKYVKVNTALIDMHA 271 (558)
Q Consensus 193 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 271 (558)
|+.+...+.+.|++++|++.|++..+.. +-+...|..+..++...|+ +++|...++++.+.. +-+...|..+..++.
T Consensus 100 ~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~~~ 177 (382)
T 2h6f_A 100 YDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLVE 177 (382)
T ss_dssp HHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHH
Confidence 3334444444444555555554444431 1233344444444445553 555555555555443 223445555555555
Q ss_pred hcCCHHHHHHHHhccC---CCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc-cCChHHH--
Q 036003 272 KCGRLDDAVSVFDNMS---GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSH-TGLVDEG-- 345 (558)
Q Consensus 272 ~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~-~g~~~~a-- 345 (558)
+.|++++|+..|+++. ..+..+|..+..++...|++++|+..|+++++... -+...|+.+..++.. .|..++|
T Consensus 178 ~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~eA~~ 256 (382)
T 2h6f_A 178 WLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDRAVL 256 (382)
T ss_dssp HHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSHHHH
T ss_pred HccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcchHHHH
Confidence 5566666666665544 22555666666666667777777777777766421 145666666666666 4444555
Q ss_pred ---HHHHHHchhhcCCCCChhHHHHHHHHHhhcC--CHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcC---------CH
Q 036003 346 ---WNYFYSMRDKYGIVPGIKHYGCMVDLLGRAG--RLDEAYRFIDELPIKS-TPILWRTLLSSCSSHN---------NL 410 (558)
Q Consensus 346 ---~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g--~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~g---------~~ 410 (558)
+..|++.... -+-+...|..+..++.+.| ++++|.+.+.++...| +...+..++..|...| ..
T Consensus 257 ~~el~~~~~Al~l--~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~ 334 (382)
T 2h6f_A 257 EREVQYTLEMIKL--VPHNESAWNYLKGILQDRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDIL 334 (382)
T ss_dssp HHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHH
T ss_pred HHHHHHHHHHHHH--CCCCHHHHHHHHHHHHccCccchHHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHHHH
Confidence 4666666642 2334567777777777776 5777777777763334 4567777777777763 25
Q ss_pred HHHHHHHHHH-HccCCCCcccHHhHHHHHHh
Q 036003 411 GLAKQVIERI-FELDDSHGGDYVILSNLCAR 440 (558)
Q Consensus 411 ~~a~~~~~~~-~~~~~~~~~~~~~l~~~~~~ 440 (558)
++|.++++++ .+.+|.....|..++..+..
T Consensus 335 ~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~ 365 (382)
T 2h6f_A 335 NKALELCEILAKEKDTIRKEYWRYIGRSLQS 365 (382)
T ss_dssp HHHHHHHHHHHHTTCGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 8899999998 88888887778777766644
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.54 E-value=9.7e-14 Score=137.55 Aligned_cols=230 Identities=11% Similarity=-0.009 Sum_probs=142.1
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHh----C-CCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC---------CHHh
Q 036003 228 MLSALSSCALLGSLDLGKWIHEYIKKY----G-LDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK---------DTQA 293 (558)
Q Consensus 228 ~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~ 293 (558)
+..+...+...|++++|...+++..+. + .+.....+..+...|...|++++|...|++..+. ...+
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 168 (411)
T 4a1s_A 89 YSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRA 168 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 334444444444444444444444322 0 0112334444555555555555555555443211 2334
Q ss_pred HHHHHHHHHHCCC-----------------hHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCChHHHHHHHHH
Q 036003 294 WSAMIVAYATHGQ-----------------GHKSILMFEEMMKA----QVSP-DEITFLGLLYACSHTGLVDEGWNYFYS 351 (558)
Q Consensus 294 ~~~li~~~~~~~~-----------------~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~ 351 (558)
+..+...|...|+ +++|+..+++..+. +..+ ....+..+...+...|++++|...+++
T Consensus 169 ~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 248 (411)
T 4a1s_A 169 LYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQE 248 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 5556666666666 66666666655431 1111 124666677777888888888888877
Q ss_pred chhhcCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036003 352 MRDKYGIVPG----IKHYGCMVDLLGRAGRLDEAYRFIDEL----PIKST----PILWRTLLSSCSSHNNLGLAKQVIER 419 (558)
Q Consensus 352 ~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~ 419 (558)
..+...-.++ ...+..+...|...|++++|.+.+++. +...+ ..++..+...+...|++++|...+++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (411)
T 4a1s_A 249 RLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNR 328 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 7653111111 236777888888888888888888775 11111 45777888899999999999999999
Q ss_pred HHccCCCC------cccHHhHHHHHHhcCChHHHHHHHHHHHhC
Q 036003 420 IFELDDSH------GGDYVILSNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 420 ~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
+++..+.. ..++..++.+|.+.|++++|.+.+++..+.
T Consensus 329 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 372 (411)
T 4a1s_A 329 HLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQL 372 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHH
Confidence 88765332 347888999999999999999999988763
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.54 E-value=7.9e-13 Score=121.31 Aligned_cols=197 Identities=8% Similarity=0.015 Sum_probs=168.3
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036003 260 VKVNTALIDMHAKCGRLDDAVSVFDNMS---GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336 (558)
Q Consensus 260 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 336 (558)
...+..+...+...|++++|.+.|+++. ..+...|..+...|...|++++|...++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 4556667778888888888888888765 2367788889999999999999999999998853 23677888899999
Q ss_pred HccCChHHHHHHHHHchhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHH
Q 036003 337 SHTGLVDEGWNYFYSMRDKYGIVP-GIKHYGCMVDLLGRAGRLDEAYRFIDEL-PI-KSTPILWRTLLSSCSSHNNLGLA 413 (558)
Q Consensus 337 ~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a 413 (558)
...|++++|.++++++... +..| +...+..+...+...|++++|.+.|++. .. ..+...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999999862 3444 5678888999999999999999999987 22 33678899999999999999999
Q ss_pred HHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhCC
Q 036003 414 KQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRG 458 (558)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 458 (558)
...++++++..|.+...+..++.+|...|++++|.++++++.+..
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 999999999999999999999999999999999999999998753
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=1.9e-13 Score=124.63 Aligned_cols=145 Identities=13% Similarity=0.030 Sum_probs=84.8
Q ss_pred CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHH
Q 036003 290 DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMV 369 (558)
Q Consensus 290 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 369 (558)
+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..+.
T Consensus 90 ~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~ 166 (243)
T 2q7f_A 90 AATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVEL--NENDTEARFQFG 166 (243)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCccHHHHHHHH
Confidence 34444555555555555556666565555532 224455555566666666666666666666542 223455566666
Q ss_pred HHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHH
Q 036003 370 DLLGRAGRLDEAYRFIDEL-P-IKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNL 437 (558)
Q Consensus 370 ~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 437 (558)
..+.+.|++++|.+.|+++ . ...+..++..+..++...|++++|.+.++++++..|.++.++..+...
T Consensus 167 ~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~l 236 (243)
T 2q7f_A 167 MCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQPDHMLALHAKKLL 236 (243)
T ss_dssp HHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCTTCHHHHHHHTC-
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCcchHHHHHHHHHH
Confidence 6666666666666666655 1 123455666677777777777777777777777777666555554443
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.54 E-value=5.2e-13 Score=124.21 Aligned_cols=241 Identities=11% Similarity=-0.018 Sum_probs=160.5
Q ss_pred hcCCCchHHHHHHHHhHHCCCC---CCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC
Q 036003 98 SRSKTPIRAIFLFVELLNSGLL---PDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSD 174 (558)
Q Consensus 98 ~~~g~~~~A~~~~~~m~~~g~~---p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 174 (558)
...|++++|+..|+++.+.... .+...+..+...+... |++++|...++++++.. +.+..++..+...|...|+
T Consensus 16 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~ 92 (275)
T 1xnf_A 16 QPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSL--GLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGN 92 (275)
T ss_dssp CCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTC
T ss_pred CccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHc--ccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccC
Confidence 3456778888888888765321 1345666677777777 88888888888888765 4467777888888888888
Q ss_pred hHHHHHHHhccCC---CCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 036003 175 VEAARRIFENISE---PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251 (558)
Q Consensus 175 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 251 (558)
+++|...|++..+ .+..+|..+...|.+.|++++|...|+++.+. .|+.......+..+...|++++|...+...
T Consensus 93 ~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~ 170 (275)
T 1xnf_A 93 FDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQH 170 (275)
T ss_dssp HHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHH
Confidence 8888888887764 35667788888888888888888888888764 354444444555556678888888888777
Q ss_pred HHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCC-------HHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCC
Q 036003 252 KKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKD-------TQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP 324 (558)
Q Consensus 252 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 324 (558)
.... +++...+. ++..+...++.++|...++.....+ ...|..+...|...|++++|...|++..+. .|
T Consensus 171 ~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p 246 (275)
T 1xnf_A 171 FEKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NV 246 (275)
T ss_dssp HHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CC
T ss_pred HhcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cc
Confidence 6654 33344443 6666777777777887777766542 355666777777777777777777777663 34
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHH
Q 036003 325 DEITFLGLLYACSHTGLVDEGWNYF 349 (558)
Q Consensus 325 ~~~~~~~ll~~~~~~g~~~~a~~~~ 349 (558)
+. +.....++...|++++|.+.+
T Consensus 247 ~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 247 HN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp TT--CHHHHHHHHHHHHHHHC----
T ss_pred hh--HHHHHHHHHHHHHHHhhHHHH
Confidence 22 112233445556666665544
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.53 E-value=1.3e-12 Score=117.35 Aligned_cols=195 Identities=11% Similarity=0.067 Sum_probs=121.5
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036003 260 VKVNTALIDMHAKCGRLDDAVSVFDNMS---GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC 336 (558)
Q Consensus 260 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~ 336 (558)
...+..+...+...|++++|.+.|+.+. ..+...|..+...|...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 3344445555555555555555555443 1234455666666666666666666666666532 22455666666666
Q ss_pred Hcc-CChHHHHHHHHHchhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHH
Q 036003 337 SHT-GLVDEGWNYFYSMRDKYGIVP-GIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIK-STPILWRTLLSSCSSHNNLGL 412 (558)
Q Consensus 337 ~~~-g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~ 412 (558)
... |++++|...++++.+. +..| +...+..+...+...|++++|.+.++++ ... .+...+..+...+...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCHHH
Confidence 667 7777777777666651 2222 2455666666777777777777777665 222 245666777777777777777
Q ss_pred HHHHHHHHHccCC-CCcccHHhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 413 AKQVIERIFELDD-SHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 413 a~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
|...++++++..| .+...+..+...+...|+.++|..+++.+.+
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 7777777777777 6666677777777777777777777777654
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.7e-12 Score=119.21 Aligned_cols=228 Identities=10% Similarity=-0.074 Sum_probs=178.9
Q ss_pred cccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCC--CCcc----hHHH
Q 036003 122 DYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE--PCVV----SYNA 195 (558)
Q Consensus 122 ~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~~~~----~~~~ 195 (558)
...+......+... |++++|...++++++.. +.+...+..+...|.+.|++++|...|++..+ ++.. +|..
T Consensus 3 ~~~~~~~a~~~~~~--~~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 79 (272)
T 3u4t_A 3 DDVEFRYADFLFKN--NNYAEAIEVFNKLEAKK-YNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEY 79 (272)
T ss_dssp --CHHHHHHHHHTT--TCHHHHHHHHHHHHHTT-CCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHH
T ss_pred HHHHHHHHHHHHHh--cCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHH
Confidence 34555666777777 99999999999999875 44566888899999999999999999998765 2322 3889
Q ss_pred HHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 036003 196 IITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGR 275 (558)
Q Consensus 196 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 275 (558)
+...+...|++++|+..|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+...+...++
T Consensus 80 lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~ 157 (272)
T 3u4t_A 80 YGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKE 157 (272)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHH
Confidence 9999999999999999999998863 4466789999999999999999999999988763 4456677777734444569
Q ss_pred HHHHHHHHhccCC---CCHHhHHHHHHHHHHCCC---hHHHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHccCCh
Q 036003 276 LDDAVSVFDNMSG---KDTQAWSAMIVAYATHGQ---GHKSILMFEEMMKAQ-VSPD------EITFLGLLYACSHTGLV 342 (558)
Q Consensus 276 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~---~~~a~~~~~~m~~~g-~~p~------~~~~~~ll~~~~~~g~~ 342 (558)
+++|.+.|+++.+ .+...+..+...+...|+ +++|...+++..+.. -.|+ ...|..+...|...|++
T Consensus 158 ~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 237 (272)
T 3u4t_A 158 YVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDK 237 (272)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCH
Confidence 9999999998763 356778888888888888 888888888877632 1133 14566677777788888
Q ss_pred HHHHHHHHHchh
Q 036003 343 DEGWNYFYSMRD 354 (558)
Q Consensus 343 ~~a~~~~~~~~~ 354 (558)
++|.+.|+++.+
T Consensus 238 ~~A~~~~~~al~ 249 (272)
T 3u4t_A 238 VKADAAWKNILA 249 (272)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 888888888775
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.5e-12 Score=115.44 Aligned_cols=204 Identities=9% Similarity=-0.093 Sum_probs=137.2
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHHhHHHHHHHHH
Q 036003 226 VTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS---GKDTQAWSAMIVAYA 302 (558)
Q Consensus 226 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~ 302 (558)
..+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|.+.|+++. ..+..++..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~ 87 (225)
T 2vq2_A 9 NIKTQLAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLC 87 (225)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHH
Confidence 344445555555555555555555555543 2234455555666666666666666665543 224556667777777
Q ss_pred HC-CChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHH
Q 036003 303 TH-GQGHKSILMFEEMMKAQVSPD-EITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDE 380 (558)
Q Consensus 303 ~~-~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 380 (558)
.. |++++|...++++.+.+..|+ ...+..+..++...|++++|...++++.+. .+.+...+..+...+.+.|++++
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 88 GRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAA--QPQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp TTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHTCHHH
T ss_pred HhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCchHHHHHHHHHHHcCCHHH
Confidence 77 777788887777776333343 456777777788888888888888887763 23356777788888888888888
Q ss_pred HHHHHHhC-CC-C-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHH
Q 036003 381 AYRFIDEL-PI-K-STPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYV 432 (558)
Q Consensus 381 A~~~~~~~-~~-~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 432 (558)
|.++++++ .. + .+...+..+...+...|+.++|..+++.+.+..|.++....
T Consensus 166 A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 220 (225)
T 2vq2_A 166 ADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFPYSEELQT 220 (225)
T ss_dssp HHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHH
Confidence 88888876 22 2 45666777777788888999999888888888887765543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.53 E-value=8.6e-12 Score=125.96 Aligned_cols=319 Identities=10% Similarity=-0.026 Sum_probs=180.6
Q ss_pred cccHHHHHHHHhcCCCchHHHHHHHHhHHC-----C--CCC-CcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhC----
Q 036003 87 IVLFNTMARGYSRSKTPIRAIFLFVELLNS-----G--LLP-DDYSFPSLLKACACVGAEALEEGKQLHCFAIKLG---- 154 (558)
Q Consensus 87 ~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-----g--~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g---- 154 (558)
+..||.|...+...|++++|++.|++..+. + ..| ...+|+.+..++... |++++|...++++.+..
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~--g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHM--GRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHc--CChHHHHHHHHHHHHHhHhcc
Confidence 445777777777778888888877776542 1 112 234566666677777 77777777777665531
Q ss_pred --C-CChHHHHHHHHHHHHhC--CChHHHHHHHhccCC--CC-cchHHHHHHH---HHHCCCccHHHHHHHHHHHCCCCC
Q 036003 155 --L-NSNLYVCTTLINLYAEC--SDVEAARRIFENISE--PC-VVSYNAIITA---YARSSRPNEALSLFRELQERNLKP 223 (558)
Q Consensus 155 --~-~~~~~~~~~ll~~~~~~--g~~~~A~~~~~~~~~--~~-~~~~~~li~~---~~~~g~~~~A~~~~~~m~~~~~~p 223 (558)
. .....++..+..++.+. +++++|...|++..+ |+ ...+..+... +...++.++|++.+++..+.. +.
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~ 207 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PD 207 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SS
T ss_pred cccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Cc
Confidence 0 11234444444444433 456777777766653 32 3333333333 334566666777776665542 22
Q ss_pred CHHHHHHHHHHHhc----cCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHHhHHH
Q 036003 224 TDVTMLSALSSCAL----LGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSG---KDTQAWSA 296 (558)
Q Consensus 224 ~~~~~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ 296 (558)
+...+..+...+.. .++.++|.+++++..... +.+..++..+...|...|++++|...|++..+ .+..+|..
T Consensus 208 ~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~ 286 (472)
T 4g1t_A 208 NQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQ 286 (472)
T ss_dssp CHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHH
T ss_pred chHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHH
Confidence 33444444333332 345566666666665553 33445555566666666666666666665542 23444555
Q ss_pred HHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcC
Q 036003 297 MIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAG 376 (558)
Q Consensus 297 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g 376 (558)
+..+|...+.... ... . ..........+..+.|...++..... -+.+...+..+...|...|
T Consensus 287 lg~~y~~~~~~~~---------~~~-~------~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~lg~~~~~~~ 348 (472)
T 4g1t_A 287 IGCCYRAKVFQVM---------NLR-E------NGMYGKRKLLELIGHAVAHLKKADEA--NDNLFRVCSILASLHALAD 348 (472)
T ss_dssp HHHHHHHHHHHHH---------HC-------------CHHHHHHHHHHHHHHHHHHHHH--CTTTCCCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHhh---------hHH-H------HHHHHHHHHHhhHHHHHHHHHHHhhc--CCchhhhhhhHHHHHHHhc
Confidence 5444432111000 000 0 00000011123467788888887763 3445677888999999999
Q ss_pred CHHHHHHHHHhC-CCCCCHH----HHHHHHH-HHHhcCCHHHHHHHHHHHHccCCCC
Q 036003 377 RLDEAYRFIDEL-PIKSTPI----LWRTLLS-SCSSHNNLGLAKQVIERIFELDDSH 427 (558)
Q Consensus 377 ~~~~A~~~~~~~-~~~~~~~----~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~ 427 (558)
++++|.+.|++. ...|+.. .+..+.. .....|++++|+..|++++++.|.+
T Consensus 349 ~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~ 405 (472)
T 4g1t_A 349 QYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKS 405 (472)
T ss_dssp CHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCC
T ss_pred cHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCccc
Confidence 999999999986 3344432 2333333 2346799999999999999999876
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.52 E-value=2.3e-13 Score=124.05 Aligned_cols=197 Identities=9% Similarity=0.064 Sum_probs=155.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036003 259 YVKVNTALIDMHAKCGRLDDAVSVFDNMSG---KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYA 335 (558)
Q Consensus 259 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 335 (558)
....+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|+..++++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 345566677778888888888888887753 367788888999999999999999999998853 3367888889999
Q ss_pred HHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHH
Q 036003 336 CSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PI-KSTPILWRTLLSSCSSHNNLGLA 413 (558)
Q Consensus 336 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a 413 (558)
+...|++++|.+.++++.+. .+.+...+..+...+.+.|++++|.+.++++ .. ..+...+..+...+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999874 3456788999999999999999999999987 22 34678899999999999999999
Q ss_pred HHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhCC
Q 036003 414 KQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRG 458 (558)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 458 (558)
...++++++..|.++.++..++.+|...|++++|.+.++++.+..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 999999999999999999999999999999999999999998743
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.52 E-value=3.7e-13 Score=132.94 Aligned_cols=260 Identities=11% Similarity=0.019 Sum_probs=140.3
Q ss_pred HHHHHHHCCCccHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHh----CCCC-chhHHHHH
Q 036003 196 IITAYARSSRPNEALSLFRELQERNLKPT----DVTMLSALSSCALLGSLDLGKWIHEYIKKY----GLDK-YVKVNTAL 266 (558)
Q Consensus 196 li~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l 266 (558)
....+...|++++|...|++..+.+ +.+ ...+..+...+...|++++|...++++... +..+ ...++..+
T Consensus 15 ~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l 93 (406)
T 3sf4_A 15 EGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNL 93 (406)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 3334444444444444444444331 111 123334444444444444444444443221 1111 12334444
Q ss_pred HHHHHhcCCHHHHHHHHhccCCC-----C----HHhHHHHHHHHHHCCC--------------------hHHHHHHHHHH
Q 036003 267 IDMHAKCGRLDDAVSVFDNMSGK-----D----TQAWSAMIVAYATHGQ--------------------GHKSILMFEEM 317 (558)
Q Consensus 267 ~~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~~~--------------------~~~a~~~~~~m 317 (558)
...|...|++++|...+++..+. + ..++..+...|...|+ +++|...+++.
T Consensus 94 a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a 173 (406)
T 3sf4_A 94 GNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEEN 173 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHH
Confidence 55555555555555555443311 1 2245555556666666 66666666554
Q ss_pred HHC----CCCCC-HHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 036003 318 MKA----QVSPD-EITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPG----IKHYGCMVDLLGRAGRLDEAYRFIDEL 388 (558)
Q Consensus 318 ~~~----g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~ 388 (558)
.+. +..|. ..++..+...+...|++++|...+++..+...-.++ ...+..+...|...|++++|...+++.
T Consensus 174 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 253 (406)
T 3sf4_A 174 LSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKT 253 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 431 11111 235666666777777777777777766542111111 235666777777777777777777665
Q ss_pred ----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC------cccHHhHHHHHHhcCChHHHHHHHHHH
Q 036003 389 ----PIKST----PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH------GGDYVILSNLCARAGRWEDVDYLRKLM 454 (558)
Q Consensus 389 ----~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m 454 (558)
+..++ ..++..+...+...|++++|.+.++++++..+.. ..++..++.+|...|++++|.+.+++.
T Consensus 254 l~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a 333 (406)
T 3sf4_A 254 LLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKH 333 (406)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 11112 3466677777778888888888888877654322 346777777888888888888887776
Q ss_pred Hh
Q 036003 455 KD 456 (558)
Q Consensus 455 ~~ 456 (558)
.+
T Consensus 334 l~ 335 (406)
T 3sf4_A 334 LE 335 (406)
T ss_dssp HH
T ss_pred HH
Confidence 54
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.51 E-value=4.6e-13 Score=128.31 Aligned_cols=260 Identities=11% Similarity=0.023 Sum_probs=164.2
Q ss_pred HHHHHHCCCccHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHh----CCC-CchhHHHHHH
Q 036003 197 ITAYARSSRPNEALSLFRELQERNLKPT----DVTMLSALSSCALLGSLDLGKWIHEYIKKY----GLD-KYVKVNTALI 267 (558)
Q Consensus 197 i~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~-~~~~~~~~l~ 267 (558)
...+...|++++|...|+++.+.. +.+ ...+..+...+...|++++|..++++..+. +.. ....++..+.
T Consensus 12 g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 12 GERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 344455555555555555554432 111 134444555555555555555555544322 111 1234455556
Q ss_pred HHHHhcCCHHHHHHHHhccCCC-----C----HHhHHHHHHHHHHCCC--------------------hHHHHHHHHHHH
Q 036003 268 DMHAKCGRLDDAVSVFDNMSGK-----D----TQAWSAMIVAYATHGQ--------------------GHKSILMFEEMM 318 (558)
Q Consensus 268 ~~~~~~g~~~~A~~~~~~~~~~-----~----~~~~~~li~~~~~~~~--------------------~~~a~~~~~~m~ 318 (558)
..|...|++++|...+++..+. + ..++..+...|...|+ +++|...+++..
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~ 170 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENL 170 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHH
Confidence 6666666666666666554321 1 2356666666777777 777777776654
Q ss_pred HC----CCCC-CHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhC-
Q 036003 319 KA----QVSP-DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPG----IKHYGCMVDLLGRAGRLDEAYRFIDEL- 388 (558)
Q Consensus 319 ~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~- 388 (558)
.. +..| ....+..+...+...|++++|...+++..+...-.++ ...+..+...+...|++++|.+.+++.
T Consensus 171 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 171 SLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTL 250 (338)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 31 1111 1246667777888888888888888877653111111 336778888889999999998888875
Q ss_pred ---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC------cccHHhHHHHHHhcCChHHHHHHHHHHH
Q 036003 389 ---PIKST----PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH------GGDYVILSNLCARAGRWEDVDYLRKLMK 455 (558)
Q Consensus 389 ---~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 455 (558)
+..++ ..++..+...+...|++++|...++++++..+.. ..++..++.+|.+.|++++|...+++..
T Consensus 251 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 330 (338)
T 3ro2_A 251 LLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 330 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 11122 4567788889999999999999999998765332 3468889999999999999999999887
Q ss_pred hC
Q 036003 456 DR 457 (558)
Q Consensus 456 ~~ 457 (558)
+.
T Consensus 331 ~~ 332 (338)
T 3ro2_A 331 EI 332 (338)
T ss_dssp HC
T ss_pred HH
Confidence 63
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.50 E-value=1.6e-13 Score=135.60 Aligned_cols=288 Identities=11% Similarity=0.017 Sum_probs=172.8
Q ss_pred HHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHhCCChHHHHHHHhccCC-----C----Ccch
Q 036003 125 FPSLLKACACVGAEALEEGKQLHCFAIKLGLNSN---LYVCTTLINLYAECSDVEAARRIFENISE-----P----CVVS 192 (558)
Q Consensus 125 ~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-----~----~~~~ 192 (558)
+...-..+... |++++|...++++++...... ..++..+...|...|++++|...|++... . ...+
T Consensus 12 l~~~g~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 89 (406)
T 3sf4_A 12 LALEGERLCKS--GDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 89 (406)
T ss_dssp HHHHHHHHHHT--TCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHh--ccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHHHH
Confidence 33444455555 777777777777776642211 24566666666677777777666655432 1 1224
Q ss_pred HHHHHHHHHHCCCccHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHH
Q 036003 193 YNAIITAYARSSRPNEALSLFRELQERNL-KPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHA 271 (558)
Q Consensus 193 ~~~li~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 271 (558)
+..+...|...|++++|...+++..+... .++. .....++..+...|.
T Consensus 90 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~-------------------------------~~~~~~~~~l~~~~~ 138 (406)
T 3sf4_A 90 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDK-------------------------------VGEARALYNLGNVYH 138 (406)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH-------------------------------HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccc-------------------------------cchHHHHHHHHHHHH
Confidence 44555555555555555555555433200 0010 001223344444455
Q ss_pred hcCC--------------------HHHHHHHHhccCC-------C--CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCC
Q 036003 272 KCGR--------------------LDDAVSVFDNMSG-------K--DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322 (558)
Q Consensus 272 ~~g~--------------------~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 322 (558)
..|+ +++|...+++..+ . ...++..+...|...|++++|...+++..+...
T Consensus 139 ~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 218 (406)
T 3sf4_A 139 AKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 218 (406)
T ss_dssp HHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHH
T ss_pred HcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 5555 5555444443321 0 233566677777777777777777777654210
Q ss_pred -CCC----HHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhC----C
Q 036003 323 -SPD----EITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPG----IKHYGCMVDLLGRAGRLDEAYRFIDEL----P 389 (558)
Q Consensus 323 -~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~----~ 389 (558)
.++ ..++..+...+...|++++|...+++......-.++ ..++..+...|...|++++|.+.+++. +
T Consensus 219 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 298 (406)
T 3sf4_A 219 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 298 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHH
Confidence 112 236777777888888888888888877643111111 456778888888999999998888876 1
Q ss_pred CCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCC------CCcccHHhHHHHHHhcCChH
Q 036003 390 IKST----PILWRTLLSSCSSHNNLGLAKQVIERIFELDD------SHGGDYVILSNLCARAGRWE 445 (558)
Q Consensus 390 ~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------~~~~~~~~l~~~~~~~g~~~ 445 (558)
..++ ..++..+...+...|++++|.+.++++++..+ ....++..+..+|...|+..
T Consensus 299 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 364 (406)
T 3sf4_A 299 ELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLSY 364 (406)
T ss_dssp HTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTS
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHhH
Confidence 1122 45778888999999999999999999887642 22446777888888887753
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.49 E-value=1.4e-12 Score=126.59 Aligned_cols=228 Identities=9% Similarity=0.033 Sum_probs=193.5
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC-HHHHHHHHhccCC---CCHHhHHHHHHH
Q 036003 225 DVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGR-LDDAVSVFDNMSG---KDTQAWSAMIVA 300 (558)
Q Consensus 225 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~~ 300 (558)
...|..+..++.+.|++++|...++++.+.. +-+...|+.+..++...|+ +++|+..|+++.. .+...|+.+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 3467778888889999999999999999876 4567888899999999997 9999999998863 478899999999
Q ss_pred HHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhh-cCCHH
Q 036003 301 YATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR-AGRLD 379 (558)
Q Consensus 301 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~-~g~~~ 379 (558)
+...|++++|+..|+++++.. +-+...|..+..++...|++++|+..|+++.+. -+.+...|+.+..++.+ .|..+
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~~~~a~~~lg~~l~~l~~~~~ 252 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYND 252 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCS
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhcCcch
Confidence 999999999999999999853 226788999999999999999999999999973 34467899999999999 66657
Q ss_pred HH-----HHHHHhC-CCCC-CHHHHHHHHHHHHhcC--CHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcC--------
Q 036003 380 EA-----YRFIDEL-PIKS-TPILWRTLLSSCSSHN--NLGLAKQVIERIFELDDSHGGDYVILSNLCARAG-------- 442 (558)
Q Consensus 380 ~A-----~~~~~~~-~~~~-~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------- 442 (558)
+| ++.|++. ...| +...|+.+...+...| ++++|.+.++++ +.+|+++..+..++.+|.+.|
T Consensus 253 eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~ 331 (382)
T 2h6f_A 253 RAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKE 331 (382)
T ss_dssp HHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHH
T ss_pred HHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchH
Confidence 77 4777776 3344 6788999999999888 689999999998 888999999999999999874
Q ss_pred C-hHHHHHHHHHH-HhC
Q 036003 443 R-WEDVDYLRKLM-KDR 457 (558)
Q Consensus 443 ~-~~~A~~~~~~m-~~~ 457 (558)
+ +++|.++++++ .+.
T Consensus 332 ~~~~~A~~~~~~l~~~~ 348 (382)
T 2h6f_A 332 DILNKALELCEILAKEK 348 (382)
T ss_dssp HHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 2 58999999998 553
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.48 E-value=3.3e-12 Score=110.94 Aligned_cols=164 Identities=13% Similarity=0.058 Sum_probs=129.6
Q ss_pred CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHH
Q 036003 290 DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP-DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCM 368 (558)
Q Consensus 290 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 368 (558)
+...|..+...|.+.|++++|+..|++..+. .| +...+..+..++.+.|++++|...+...... .+.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKA--DPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHH
Confidence 4566777888888888888888888887774 34 4567777788888888888888888887753 33456667777
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHH
Q 036003 369 VDLLGRAGRLDEAYRFIDEL-PI-KSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWED 446 (558)
Q Consensus 369 i~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 446 (558)
...+...++++.|.+.+.+. .. +.+...+..+...+...|++++|++.|+++++.+|.++.+|..++.+|.+.|++++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHH
Confidence 77888888888888888776 22 33567788888888899999999999999999999888889999999999999999
Q ss_pred HHHHHHHHHhC
Q 036003 447 VDYLRKLMKDR 457 (558)
Q Consensus 447 A~~~~~~m~~~ 457 (558)
|.+.|++..+.
T Consensus 160 A~~~~~~al~~ 170 (184)
T 3vtx_A 160 AVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHT
T ss_pred HHHHHHHHHhC
Confidence 99999888764
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.48 E-value=5.6e-13 Score=132.03 Aligned_cols=233 Identities=12% Similarity=0.018 Sum_probs=146.3
Q ss_pred HHHHHHHHHHCCCccHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh----C-CCCchhH
Q 036003 193 YNAIITAYARSSRPNEALSLFRELQER----NL-KPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY----G-LDKYVKV 262 (558)
Q Consensus 193 ~~~li~~~~~~g~~~~A~~~~~~m~~~----~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~----~-~~~~~~~ 262 (558)
|..+...|...|++++|+..+++..+. +- +.....+..+...+...|++++|...++++.+. + .+....+
T Consensus 89 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 168 (411)
T 4a1s_A 89 YSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRA 168 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHH
Confidence 444444444445555554444443321 10 112234444555555556666665555554432 1 1112345
Q ss_pred HHHHHHHHHhcCC-----------------HHHHHHHHhccCCC---------CHHhHHHHHHHHHHCCChHHHHHHHHH
Q 036003 263 NTALIDMHAKCGR-----------------LDDAVSVFDNMSGK---------DTQAWSAMIVAYATHGQGHKSILMFEE 316 (558)
Q Consensus 263 ~~~l~~~~~~~g~-----------------~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~~~~~~a~~~~~~ 316 (558)
+..+...|...|+ +++|.+.+++..+. ...++..+...|...|++++|+..+++
T Consensus 169 ~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 248 (411)
T 4a1s_A 169 LYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQE 248 (411)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHH
Confidence 5556666666666 66666666554321 234677778888888888888888887
Q ss_pred HHHCCC-CCC----HHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCC----ChhHHHHHHHHHhhcCCHHHHHHHHHh
Q 036003 317 MMKAQV-SPD----EITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVP----GIKHYGCMVDLLGRAGRLDEAYRFIDE 387 (558)
Q Consensus 317 m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~ 387 (558)
..+... .++ ...+..+...+...|++++|...+++......-.. ...++..+...|...|++++|.+++++
T Consensus 249 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 328 (411)
T 4a1s_A 249 RLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNR 328 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 765211 012 23677788888899999999999888775311111 146778888899999999999999987
Q ss_pred C----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCC
Q 036003 388 L----PIKST----PILWRTLLSSCSSHNNLGLAKQVIERIFELDD 425 (558)
Q Consensus 388 ~----~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 425 (558)
. +..++ ..++..+...|...|++++|.+.+++++++.+
T Consensus 329 al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~ 374 (411)
T 4a1s_A 329 HLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAX 374 (411)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHh
Confidence 6 11112 35778888999999999999999999987654
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.46 E-value=5.7e-13 Score=134.23 Aligned_cols=192 Identities=9% Similarity=-0.016 Sum_probs=153.8
Q ss_pred chhHHHHHHHHHHhcCCH-HHHHHHHhccC---CCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036003 259 YVKVNTALIDMHAKCGRL-DDAVSVFDNMS---GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLY 334 (558)
Q Consensus 259 ~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~ 334 (558)
+...+..+...|...|++ ++|++.|++.. ..+..+|..+..+|...|++++|+..|++..+. .|+...+..+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~ 178 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSM 178 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHH
Confidence 445555566666666666 66666666543 225667777888888888888888888888874 577778888888
Q ss_pred HHHcc---------CChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhc--------CCHHHHHHHHHhC-CCCC----
Q 036003 335 ACSHT---------GLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRA--------GRLDEAYRFIDEL-PIKS---- 392 (558)
Q Consensus 335 ~~~~~---------g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~--------g~~~~A~~~~~~~-~~~~---- 392 (558)
.+... |++++|.+.|++..+. .+.+...|..+..+|... |++++|++.|++. ...|
T Consensus 179 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~ 256 (474)
T 4abn_A 179 VLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASS 256 (474)
T ss_dssp HHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGG
T ss_pred HHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCccc
Confidence 88888 9999999999998863 344577888888899888 8999999999987 3344
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHH
Q 036003 393 TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLM 454 (558)
Q Consensus 393 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m 454 (558)
+...|..+..+|...|++++|.+.|+++++.+|.++.++..+..++...|++++|.+.++++
T Consensus 257 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 257 NPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 77899999999999999999999999999999999999999999999999999998765433
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.44 E-value=1.7e-12 Score=124.36 Aligned_cols=264 Identities=11% Similarity=0.041 Sum_probs=152.7
Q ss_pred HHHHhcCcccHHHHHHHHHHHHHhCCCCh---HHHHHHHHHHHHhCCChHHHHHHHhccCC-----C----CcchHHHHH
Q 036003 130 KACACVGAEALEEGKQLHCFAIKLGLNSN---LYVCTTLINLYAECSDVEAARRIFENISE-----P----CVVSYNAII 197 (558)
Q Consensus 130 ~~~~~~~~~~~~~a~~~~~~~~~~g~~~~---~~~~~~ll~~~~~~g~~~~A~~~~~~~~~-----~----~~~~~~~li 197 (558)
..+... |++++|...++++++...... ...+..+...|...|++++|...+++..+ . ...++..+.
T Consensus 13 ~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 90 (338)
T 3ro2_A 13 ERLCKS--GDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKASGNLG 90 (338)
T ss_dssp HHHHHT--TCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHh--ccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHHHHHHH
Confidence 344445 677777777777666532111 24555666666666666666666655432 1 122344455
Q ss_pred HHHHHCCCccHHHHHHHHHHHCCC-CCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC-
Q 036003 198 TAYARSSRPNEALSLFRELQERNL-KPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGR- 275 (558)
Q Consensus 198 ~~~~~~g~~~~A~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~- 275 (558)
..|...|++++|...+++..+... .++.. ....++..+...|...|+
T Consensus 91 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------------------------~~~~~~~~l~~~~~~~~~~ 139 (338)
T 3ro2_A 91 NTLKVLGNFDEAIVCCQRHLDISRELNDKV-------------------------------GEARALYNLGNVYHAKGKS 139 (338)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-------------------------------HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHccCHHHHHHHHHHHHHHHHHhcCch-------------------------------HHHHHHHHHHHHHHHcCcc
Confidence 555555555555555554432100 01100 001233444444555555
Q ss_pred -------------------HHHHHHHHhccCC-------C--CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCC-CCC-
Q 036003 276 -------------------LDDAVSVFDNMSG-------K--DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV-SPD- 325 (558)
Q Consensus 276 -------------------~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~- 325 (558)
+++|.+.+++..+ + ...++..+...+...|++++|...+++..+... .++
T Consensus 140 ~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 219 (338)
T 3ro2_A 140 FGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDK 219 (338)
T ss_dssp SSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred cccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCCh
Confidence 5555544444321 0 133566667777777777777777777654210 011
Q ss_pred ---HHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC-
Q 036003 326 ---EITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPG----IKHYGCMVDLLGRAGRLDEAYRFIDEL----PIKST- 393 (558)
Q Consensus 326 ---~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~- 393 (558)
..++..+...+...|++++|...+++......-..+ ..++..+...|...|++++|...+++. +..++
T Consensus 220 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~ 299 (338)
T 3ro2_A 220 AAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDR 299 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCc
Confidence 236677777788888888888888877643111111 456777888888999999998888776 11112
Q ss_pred ---HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 036003 394 ---PILWRTLLSSCSSHNNLGLAKQVIERIFELDDS 426 (558)
Q Consensus 394 ---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 426 (558)
..++..+...+...|++++|...++++++..+.
T Consensus 300 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 300 IGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 346778888999999999999999999877643
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.43 E-value=1.3e-12 Score=128.23 Aligned_cols=162 Identities=10% Similarity=0.045 Sum_probs=72.3
Q ss_pred hHHHHHHHHHHCCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCChHHHHHHHHHchhhc---CC-CCChh
Q 036003 293 AWSAMIVAYATHGQGHKSILMFEEMMKA----QVSP-DEITFLGLLYACSHTGLVDEGWNYFYSMRDKY---GI-VPGIK 363 (558)
Q Consensus 293 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~-~~~~~ 363 (558)
+++.+...|...|++++|+..|++..+. +-.+ ...++..+..+|...|++++|...+++..+.. +. +....
T Consensus 186 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 265 (383)
T 3ulq_A 186 CHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQ 265 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHH
Confidence 3444444444455555555444444321 0000 01244444455555555555555555444310 11 11233
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC---HHHHHHHHHHHHhcCC---HHHHHHHHHHHHccCCCCcccHHh
Q 036003 364 HYGCMVDLLGRAGRLDEAYRFIDEL----PIKST---PILWRTLLSSCSSHNN---LGLAKQVIERIFELDDSHGGDYVI 433 (558)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~---~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~ 433 (558)
++..+...|.+.|++++|.+.+++. +..++ ...+..+...+...|+ +++|..++++. ...+.....+..
T Consensus 266 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~ 344 (383)
T 3ulq_A 266 AYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAID 344 (383)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHH
Confidence 4445555555555555555555443 00011 1223344445555555 44444444444 111222334555
Q ss_pred HHHHHHhcCChHHHHHHHHHHH
Q 036003 434 LSNLCARAGRWEDVDYLRKLMK 455 (558)
Q Consensus 434 l~~~~~~~g~~~~A~~~~~~m~ 455 (558)
++..|...|++++|...+++..
T Consensus 345 la~~y~~~g~~~~A~~~~~~al 366 (383)
T 3ulq_A 345 VAKYYHERKNFQKASAYFLKVE 366 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHH
Confidence 6666666666666666665554
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.40 E-value=1.5e-11 Score=120.56 Aligned_cols=229 Identities=8% Similarity=0.045 Sum_probs=159.2
Q ss_pred HHHHHHHCCCccHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCC------CCchhHHH
Q 036003 196 IITAYARSSRPNEALSLFRELQER----NLKP-TDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL------DKYVKVNT 264 (558)
Q Consensus 196 li~~~~~~g~~~~A~~~~~~m~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~------~~~~~~~~ 264 (558)
....+...|++++|+..|++..+. +-.+ ...++..+...+...|++++|...+.+..+... +....+++
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 188 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHS 188 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHH
Confidence 344455666666666666665442 1111 223556666666677777777777666654311 11134566
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCCC---------CHHhHHHHHHHHHHCCChHHHHHHHHHHHHC----CCCC-CHHHHH
Q 036003 265 ALIDMHAKCGRLDDAVSVFDNMSGK---------DTQAWSAMIVAYATHGQGHKSILMFEEMMKA----QVSP-DEITFL 330 (558)
Q Consensus 265 ~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~ 330 (558)
.+...|...|++++|...|++..+. ...++..+...|...|++++|+..+++..+. +..| ...++.
T Consensus 189 ~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 268 (383)
T 3ulq_A 189 LFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYF 268 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHH
Confidence 6777788888888888777765421 1246788888899999999999999888762 2323 356788
Q ss_pred HHHHHHHccCChHHHHHHHHHchhhcC---CCCChhHHHHHHHHHhhcCC---HHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 036003 331 GLLYACSHTGLVDEGWNYFYSMRDKYG---IVPGIKHYGCMVDLLGRAGR---LDEAYRFIDELPIKST-PILWRTLLSS 403 (558)
Q Consensus 331 ~ll~~~~~~g~~~~a~~~~~~~~~~~~---~~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~-~~~~~~l~~~ 403 (558)
.+...+...|++++|...+++...... -+.....+..+...|...|+ +++|..++++.+..|+ ...+..+...
T Consensus 269 ~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 269 LITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHHHHHHHHHHH
Confidence 888999999999999999988775311 11122335678888999999 8999999999854443 3567788999
Q ss_pred HHhcCCHHHHHHHHHHHHccC
Q 036003 404 CSSHNNLGLAKQVIERIFELD 424 (558)
Q Consensus 404 ~~~~g~~~~a~~~~~~~~~~~ 424 (558)
|...|++++|...++++++..
T Consensus 349 y~~~g~~~~A~~~~~~al~~~ 369 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQVR 369 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHH
Confidence 999999999999999998754
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.40 E-value=8.7e-10 Score=114.21 Aligned_cols=213 Identities=7% Similarity=-0.042 Sum_probs=109.3
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHH-HHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC
Q 036003 210 LSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGK-WIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSG 288 (558)
Q Consensus 210 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 288 (558)
..+|++.... ++-+...|...+..+...|+.++|. .++++..... +.+...|-.++....+.|+++.|.++|+.+..
T Consensus 329 ~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~ 406 (679)
T 4e6h_A 329 TYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCID 406 (679)
T ss_dssp HHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 3445554443 2334445555555555556666664 6666665432 33444455555556666666666666665542
Q ss_pred -------------C------------CHHhHHHHHHHHHHCCChHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHcc-CC
Q 036003 289 -------------K------------DTQAWSAMIVAYATHGQGHKSILMFEEMMKA-QVSPDEITFLGLLYACSHT-GL 341 (558)
Q Consensus 289 -------------~------------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~ll~~~~~~-g~ 341 (558)
| ....|...+....+.|..+.|..+|.+..+. +. +....|...+..-.+. ++
T Consensus 407 ~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~-~~~~lyi~~A~lE~~~~~d 485 (679)
T 4e6h_A 407 RIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKL-VTPDIYLENAYIEYHISKD 485 (679)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGG-SCTHHHHHHHHHHHTTTSC
T ss_pred HHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCC-CChHHHHHHHHHHHHhCCC
Confidence 1 0123555555555556666666666666553 11 1112222211111222 33
Q ss_pred hHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC----CHHHHHHHHHHHHhcCCHHHHHHH
Q 036003 342 VDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS----TPILWRTLLSSCSSHNNLGLAKQV 416 (558)
Q Consensus 342 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~----~~~~~~~l~~~~~~~g~~~~a~~~ 416 (558)
.+.|..+|+...+. .+.+...+...++.....|+.+.|..+|++. ...| ....|...+..-...|+.+.+..+
T Consensus 486 ~e~Ar~ife~~Lk~--~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v 563 (679)
T 4e6h_A 486 TKTACKVLELGLKY--FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTL 563 (679)
T ss_dssp CHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHH
T ss_pred HHHHHHHHHHHHHH--CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 56666666666653 2334445555555555666666666666664 2122 224555555555666666666666
Q ss_pred HHHHHccCCCC
Q 036003 417 IERIFELDDSH 427 (558)
Q Consensus 417 ~~~~~~~~~~~ 427 (558)
.+++.+..|++
T Consensus 564 ~~R~~~~~P~~ 574 (679)
T 4e6h_A 564 EKRFFEKFPEV 574 (679)
T ss_dssp HHHHHHHSTTC
T ss_pred HHHHHHhCCCC
Confidence 66666666554
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.1e-12 Score=124.40 Aligned_cols=241 Identities=10% Similarity=0.028 Sum_probs=115.3
Q ss_pred chHHHHHHHHHHCCCccHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh------CC-
Q 036003 191 VSYNAIITAYARSSRPNEALSLFRELQER-------NLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY------GL- 256 (558)
Q Consensus 191 ~~~~~li~~~~~~g~~~~A~~~~~~m~~~-------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~- 256 (558)
.++..+...+...|++++|..+|+++.+. ..+.....+..+...+...|++++|..+++++.+. +.
T Consensus 28 ~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 107 (311)
T 3nf1_A 28 RTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDH 107 (311)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCC
Confidence 45667777777777777777777776652 11223445666666777777777777777766543 11
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-----------CHHhHHHHHHHHHHCCChHHHHHHHHHHHHC-----
Q 036003 257 DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK-----------DTQAWSAMIVAYATHGQGHKSILMFEEMMKA----- 320 (558)
Q Consensus 257 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----- 320 (558)
+....++..+...|...|++++|...|++..+. ....+..+...+...|++++|+..++++.+.
T Consensus 108 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~ 187 (311)
T 3nf1_A 108 PAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKL 187 (311)
T ss_dssp HHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTS
T ss_pred hHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHh
Confidence 222444555556666666666666655544311 1223444444555555555555555544432
Q ss_pred -CCCCC-HHHHHHHHHHHHccCChHHHHHHHHHchhhc------CCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC
Q 036003 321 -QVSPD-EITFLGLLYACSHTGLVDEGWNYFYSMRDKY------GIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKS 392 (558)
Q Consensus 321 -g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~ 392 (558)
+..|+ ..++..+...+...|++++|...++++.+.. ...+.......
T Consensus 188 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~------------------------- 242 (311)
T 3nf1_A 188 GPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWM------------------------- 242 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHH-------------------------
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHH-------------------------
Confidence 11111 1234444444444445555544444444310 00000000000
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 393 TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 393 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
....+..+...+...+.+.++...+++.....|....++..++.+|.+.|++++|.+.+++..+
T Consensus 243 ~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 243 HAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp HHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 0111222223333445555566666666666666666677777777777777777777766543
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.39 E-value=8.8e-12 Score=108.24 Aligned_cols=167 Identities=10% Similarity=0.065 Sum_probs=131.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036003 259 YVKVNTALIDMHAKCGRLDDAVSVFDNMS---GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYA 335 (558)
Q Consensus 259 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~ 335 (558)
+..+|..+...|.+.|++++|++.|++.. ..+..+|..+..+|.+.|++++|+..+++..... +-+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 45566777777777777777777777764 2366778888888888888888888888887743 2245667777778
Q ss_pred HHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH
Q 036003 336 CSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLA 413 (558)
Q Consensus 336 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a 413 (558)
+...++++.|...+.+... ..+.+...+..+...|.+.|++++|++.|++. ...| +..+|..+..++...|++++|
T Consensus 83 ~~~~~~~~~a~~~~~~a~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~~A 160 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIA--LNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRDEA 160 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH--hCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHHHH
Confidence 8888999999999888876 33446778888899999999999999999887 3333 678899999999999999999
Q ss_pred HHHHHHHHccCCCCc
Q 036003 414 KQVIERIFELDDSHG 428 (558)
Q Consensus 414 ~~~~~~~~~~~~~~~ 428 (558)
.+.|+++++.+|.++
T Consensus 161 ~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 161 VKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHTTHHHH
T ss_pred HHHHHHHHhCCccCH
Confidence 999999999988753
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.39 E-value=1.6e-10 Score=109.42 Aligned_cols=218 Identities=11% Similarity=0.040 Sum_probs=125.8
Q ss_pred cHHHHHHHHHHHCCCCCCHHHHHHHHHHHh-------ccCCh-------HHHHHHHHHHHHhCCCCchhHHHHHHHHHHh
Q 036003 207 NEALSLFRELQERNLKPTDVTMLSALSSCA-------LLGSL-------DLGKWIHEYIKKYGLDKYVKVNTALIDMHAK 272 (558)
Q Consensus 207 ~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~-------~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 272 (558)
++|..+|++..+.. +-+...|..++..+. +.|++ ++|..+|++..+.-.+.+...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45555665555431 234444444444443 23554 5666666666652112334456666666666
Q ss_pred cCCHHHHHHHHhccCCC---CHH-hHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HccCChHHHHH
Q 036003 273 CGRLDDAVSVFDNMSGK---DTQ-AWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYAC-SHTGLVDEGWN 347 (558)
Q Consensus 273 ~g~~~~A~~~~~~~~~~---~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~-~~~g~~~~a~~ 347 (558)
.|++++|.++|++..+. +.. .|..++..+.+.|++++|..+|++..+... ++...|....... ...|++++|..
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 66666666666665432 233 566666666666777777777777666421 2233333222221 12577777777
Q ss_pred HHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-C---CCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036003 348 YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-P---IKS--TPILWRTLLSSCSSHNNLGLAKQVIERIF 421 (558)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~---~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 421 (558)
+|++..+. .+.+...|..++..+.+.|++++|..+|++. . ..| ....|..++..+...|+.+.|..++++++
T Consensus 191 ~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~ 268 (308)
T 2ond_A 191 IFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRF 268 (308)
T ss_dssp HHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHh--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 77777653 2335566677777777777777777777765 1 233 34566667777777777777777777777
Q ss_pred ccCCCCc
Q 036003 422 ELDDSHG 428 (558)
Q Consensus 422 ~~~~~~~ 428 (558)
+..|.+.
T Consensus 269 ~~~p~~~ 275 (308)
T 2ond_A 269 TAFREEY 275 (308)
T ss_dssp HHTTTTT
T ss_pred HHccccc
Confidence 7776654
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.36 E-value=2.6e-12 Score=121.72 Aligned_cols=249 Identities=10% Similarity=0.067 Sum_probs=170.3
Q ss_pred CChHHHHHHHHHHHHhCCChHHHHHHHhccCC--------C---CcchHHHHHHHHHHCCCccHHHHHHHHHHHC-----
Q 036003 156 NSNLYVCTTLINLYAECSDVEAARRIFENISE--------P---CVVSYNAIITAYARSSRPNEALSLFRELQER----- 219 (558)
Q Consensus 156 ~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--------~---~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~----- 219 (558)
+.+..++..+...|...|++++|..+|+++.+ . ...++..+...|...|++++|...+++..+.
T Consensus 24 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 103 (311)
T 3nf1_A 24 PARLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTL 103 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHh
Confidence 34567889999999999999999999988764 1 2346788899999999999999999998764
Q ss_pred -CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHHh------CC-CCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-
Q 036003 220 -NLKP-TDVTMLSALSSCALLGSLDLGKWIHEYIKKY------GL-DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK- 289 (558)
Q Consensus 220 -~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~- 289 (558)
+-.| ....+..+...+...|++++|..+++++.+. +. +.....+..+...|...|++++|.++|++..+.
T Consensus 104 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~ 183 (311)
T 3nf1_A 104 GKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIY 183 (311)
T ss_dssp CTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH
Confidence 2222 3557888899999999999999999998765 22 234567888999999999999999999887431
Q ss_pred ----------CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCC
Q 036003 290 ----------DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIV 359 (558)
Q Consensus 290 ----------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 359 (558)
...++..+...|...|++++|...++++.+.. |+. .+..+ -.......
T Consensus 184 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--~~~-~~~~~---~~~~~~~~---------------- 241 (311)
T 3nf1_A 184 QTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRA--HER-EFGSV---DDENKPIW---------------- 241 (311)
T ss_dssp HHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--HHH-HHC---------CCHH----------------
T ss_pred HHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--HHh-cCCCC---CcchHHHH----------------
Confidence 34568889999999999999999999998731 110 00000 00000000
Q ss_pred CChhHHHHHHHHHhhcCCHHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 036003 360 PGIKHYGCMVDLLGRAGRLDEAYRFIDELP-IKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS 426 (558)
Q Consensus 360 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 426 (558)
.....+..+...+...+.+.+|...+.... ..| +..++..+..+|...|++++|.+.+++++++.|.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 242 MHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp HHHHHHHHC-------CCSCCCC---------CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 011122233334445566666666666652 223 3467788888899999999999999988877653
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.36 E-value=6.7e-10 Score=108.26 Aligned_cols=259 Identities=12% Similarity=-0.003 Sum_probs=150.8
Q ss_pred HHHHHCCCccHHHHHHHHHHHCCCCCCHH----HHHHHHHHHhccCChHHHHHHHHHHHHhCC---CC--chhHHHHHHH
Q 036003 198 TAYARSSRPNEALSLFRELQERNLKPTDV----TMLSALSSCALLGSLDLGKWIHEYIKKYGL---DK--YVKVNTALID 268 (558)
Q Consensus 198 ~~~~~~g~~~~A~~~~~~m~~~~~~p~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~---~~--~~~~~~~l~~ 268 (558)
..+...|++++|...+++.....-..+.. .+..+...+...|++++|...+++...... .+ ....+..+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 34445566666666666555432111111 233444555566666666666665543210 01 0122344566
Q ss_pred HHHhcCCHHHHHHHHhccCC----------C-CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCC--C--CHHHHHHHH
Q 036003 269 MHAKCGRLDDAVSVFDNMSG----------K-DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVS--P--DEITFLGLL 333 (558)
Q Consensus 269 ~~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p--~~~~~~~ll 333 (558)
.+...|++++|.+.+++... + ....+..+...+...|++++|...+++....... + ...++..+.
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la 181 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLI 181 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHH
Confidence 66667777777666665431 1 1234555666777777888887777776653211 1 234566677
Q ss_pred HHHHccCChHHHHHHHHHchhhcCCCCChhHHH-----HHHHHHhhcCCHHHHHHHHHhC-CCCCC-----HHHHHHHHH
Q 036003 334 YACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYG-----CMVDLLGRAGRLDEAYRFIDEL-PIKST-----PILWRTLLS 402 (558)
Q Consensus 334 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~-----~li~~~~~~g~~~~A~~~~~~~-~~~~~-----~~~~~~l~~ 402 (558)
..+...|++++|...+++......-......+. ..+..+...|++++|..++++. ...+. ...+..+..
T Consensus 182 ~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~ 261 (373)
T 1hz4_A 182 QCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIAR 261 (373)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHH
Confidence 777778888888888877764311111111111 2334466788888888888876 21121 234566777
Q ss_pred HHHhcCCHHHHHHHHHHHHccCCCC------cccHHhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 403 SCSSHNNLGLAKQVIERIFELDDSH------GGDYVILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 403 ~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
.+...|++++|...++++.+..+.. ...+..+..+|...|++++|...+++...
T Consensus 262 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 262 AQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 7888888888888888876654221 12566677778888888888888877654
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.34 E-value=9e-11 Score=111.14 Aligned_cols=212 Identities=9% Similarity=0.046 Sum_probs=170.9
Q ss_pred HHHHHHHHHHHHhCCCCchhHHHHHHHHHH-------hcCCH-------HHHHHHHhccCC---C-CHHhHHHHHHHHHH
Q 036003 242 DLGKWIHEYIKKYGLDKYVKVNTALIDMHA-------KCGRL-------DDAVSVFDNMSG---K-DTQAWSAMIVAYAT 303 (558)
Q Consensus 242 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~li~~~~~ 303 (558)
++|..+|+++.... +.+...|..++..+. +.|++ ++|..+|++..+ | +...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67888888888764 556777877777775 35886 899999998764 2 56789999999999
Q ss_pred CCChHHHHHHHHHHHHCCCCCCH-H-HHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHh-hcCCHHH
Q 036003 304 HGQGHKSILMFEEMMKAQVSPDE-I-TFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLG-RAGRLDE 380 (558)
Q Consensus 304 ~~~~~~a~~~~~~m~~~g~~p~~-~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~-~~g~~~~ 380 (558)
.|++++|..+|++..+ +.|+. . .|..+...+.+.|++++|..+|++..+. .+.+...|...+.... ..|++++
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~a~~~~~~~~~~~~ 187 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED--ARTRHHVYVTAALMEYYCSKDKSV 187 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS--TTCCTHHHHHHHHHHHHTSCCHHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHHcCCHHH
Confidence 9999999999999998 45543 3 7888999999999999999999999863 2344555554444422 3699999
Q ss_pred HHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHcc---CCC-CcccHHhHHHHHHhcCChHHHHHHHHHH
Q 036003 381 AYRFIDEL-PI-KSTPILWRTLLSSCSSHNNLGLAKQVIERIFEL---DDS-HGGDYVILSNLCARAGRWEDVDYLRKLM 454 (558)
Q Consensus 381 A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m 454 (558)
|.++|++. .. +.+...|..++..+.+.|++++|..+|+++++. .|. ....|..++..+.+.|+.++|..+++++
T Consensus 188 A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 188 AFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99999987 22 236788999999999999999999999999996 342 4567888999999999999999999998
Q ss_pred HhCC
Q 036003 455 KDRG 458 (558)
Q Consensus 455 ~~~g 458 (558)
.+..
T Consensus 268 ~~~~ 271 (308)
T 2ond_A 268 FTAF 271 (308)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 8743
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.34 E-value=1.5e-09 Score=112.42 Aligned_cols=412 Identities=9% Similarity=-0.013 Sum_probs=279.4
Q ss_pred HHHHHHhCCCCChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCC---CCcccHHHHHHHHhcCCC---chHHHHHHHHhH
Q 036003 41 HAVTIKTHLQNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPE---PDIVLFNTMARGYSRSKT---PIRAIFLFVELL 114 (558)
Q Consensus 41 ~~~~~~~g~~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~---~~~A~~~~~~m~ 114 (558)
++..++.. +-|...|..++..+.+. +.++.+..+|+++.. .+...|...+..-.+.|. ++.+..+|++..
T Consensus 55 lE~~l~~n-p~d~~~W~~yi~~~~~~---~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRal 130 (679)
T 4e6h_A 55 LNDMIEEQ-PTDIFLYVKLLKHHVSL---KQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARCL 130 (679)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHHT
T ss_pred HHHHHHHC-cCCHHHHHHHHHHHHhc---CcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHHH
Confidence 34443433 56899999999999998 999999999998865 355678888888888888 999999999998
Q ss_pred HCC-CCCCcccHHHHHHHHHhcC------cccHHHHHHHHHHHHHh-CC-CCh-HHHHHHHHHHHHh---------CCCh
Q 036003 115 NSG-LLPDDYSFPSLLKACACVG------AEALEEGKQLHCFAIKL-GL-NSN-LYVCTTLINLYAE---------CSDV 175 (558)
Q Consensus 115 ~~g-~~p~~~~~~~ll~~~~~~~------~~~~~~a~~~~~~~~~~-g~-~~~-~~~~~~ll~~~~~---------~g~~ 175 (558)
... ..|+...|..-+.-..... .+..+...++|+.++.. |. .++ ...|...+..... .+++
T Consensus 131 ~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~~ 210 (679)
T 4e6h_A 131 SKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQRV 210 (679)
T ss_dssp CSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHHH
T ss_pred HhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhHH
Confidence 763 2377777777766554431 01234456788877653 65 453 4678777766543 3457
Q ss_pred HHHHHHHhccCC-CCc---chHH---HHHHHHH----------HCCCccHHHHHHHHHHHC--CC----C----------
Q 036003 176 EAARRIFENISE-PCV---VSYN---AIITAYA----------RSSRPNEALSLFRELQER--NL----K---------- 222 (558)
Q Consensus 176 ~~A~~~~~~~~~-~~~---~~~~---~li~~~~----------~~g~~~~A~~~~~~m~~~--~~----~---------- 222 (558)
+.+..+|++... |.. .+|. .+...+. ...+++.|...+.++... ++ +
T Consensus 211 ~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~~ 290 (679)
T 4e6h_A 211 QYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATESN 290 (679)
T ss_dssp HHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTTT
T ss_pred HHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhcc
Confidence 789999999876 321 2232 2211110 011233344445443211 11 1
Q ss_pred -C-----C---HHHHHHHHHHHhccC-------ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHH-HHHhc
Q 036003 223 -P-----T---DVTMLSALSSCALLG-------SLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAV-SVFDN 285 (558)
Q Consensus 223 -p-----~---~~~~~~ll~~~~~~~-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~ 285 (558)
| + ...|...+.--...+ ..+.+..+|++.... .+.+..+|-..+..+.+.|+.++|. .+|++
T Consensus 291 ~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r~il~r 369 (679)
T 4e6h_A 291 LPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVITKYLKL 369 (679)
T ss_dssp SCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHHHHHHH
T ss_pred CCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHHHHHHH
Confidence 1 1 122333333222221 123455678888776 3557788888888888999999996 99988
Q ss_pred cCC---CCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCC---------CCC------------HHHHHHHHHHHHccCC
Q 036003 286 MSG---KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV---------SPD------------EITFLGLLYACSHTGL 341 (558)
Q Consensus 286 ~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~---------~p~------------~~~~~~ll~~~~~~g~ 341 (558)
... .+...|-..+...-+.|++++|..+|+++.+... .|+ ...|...+....+.|+
T Consensus 370 Ai~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~ 449 (679)
T 4e6h_A 370 GQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQG 449 (679)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCC
Confidence 753 3566678888888999999999999999886310 142 2357777777778899
Q ss_pred hHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhc-CCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036003 342 VDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRA-GRLDEAYRFIDEL--PIKSTPILWRTLLSSCSSHNNLGLAKQVIE 418 (558)
Q Consensus 342 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 418 (558)
.+.|..+|....+. ........|...+..-.+. ++.+.|.++|+.. ....+...|...+......|+.+.|..+|+
T Consensus 450 l~~AR~vf~~A~~~-~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~p~~~~~w~~y~~fe~~~~~~~~AR~lfe 528 (679)
T 4e6h_A 450 LAASRKIFGKCRRL-KKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYFATDGEYINKYLDFLIYVNEESQVKSLFE 528 (679)
T ss_dssp HHHHHHHHHHHHHT-GGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 99999999999873 1222344554444444444 4589999999987 223356778888888888999999999999
Q ss_pred HHHccCCC---CcccHHhHHHHHHhcCChHHHHHHHHHHHhCC
Q 036003 419 RIFELDDS---HGGDYVILSNLCARAGRWEDVDYLRKLMKDRG 458 (558)
Q Consensus 419 ~~~~~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 458 (558)
+++...|+ ....|..++..-.+.|+.+.+.++.+++.+.-
T Consensus 529 ral~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~ 571 (679)
T 4e6h_A 529 SSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF 571 (679)
T ss_dssp HHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS
T ss_pred HHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99998873 34578888888889999999999999998753
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.34 E-value=3.4e-11 Score=117.72 Aligned_cols=162 Identities=13% Similarity=0.051 Sum_probs=78.9
Q ss_pred hHHHHHHHHHHCCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHccCChHHHHHHHHHchhhc---CCCCChhH
Q 036003 293 AWSAMIVAYATHGQGHKSILMFEEMMKA----QVSP-DEITFLGLLYACSHTGLVDEGWNYFYSMRDKY---GIVPGIKH 364 (558)
Q Consensus 293 ~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~~~~~ 364 (558)
+++.+...|...|++++|+..|++..+. +..+ ...++..+..+|...|++++|...+++..... +.+....+
T Consensus 184 ~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 263 (378)
T 3q15_A 184 SLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKV 263 (378)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHH
Confidence 3445555555555555555555554431 1110 11344455555555666666666655554310 11112444
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC----CC--CCC-HHHHHHHHHHHHhcCC---HHHHHHHHHHHHccCCCCcccHHhH
Q 036003 365 YGCMVDLLGRAGRLDEAYRFIDEL----PI--KST-PILWRTLLSSCSSHNN---LGLAKQVIERIFELDDSHGGDYVIL 434 (558)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~~~~~~----~~--~~~-~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~l 434 (558)
+..+...|.+.|++++|...+++. .. .+. ...+..+...+...++ +.+|...+++. ...+.....+..+
T Consensus 264 ~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~l 342 (378)
T 3q15_A 264 LFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSA 342 (378)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHH
Confidence 555556666666666666666554 11 111 2233444444445555 55555555541 1112223345566
Q ss_pred HHHHHhcCChHHHHHHHHHHH
Q 036003 435 SNLCARAGRWEDVDYLRKLMK 455 (558)
Q Consensus 435 ~~~~~~~g~~~~A~~~~~~m~ 455 (558)
+..|...|++++|...+++..
T Consensus 343 a~~y~~~g~~~~A~~~~~~al 363 (378)
T 3q15_A 343 AAVFESSCHFEQAAAFYRKVL 363 (378)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHH
Confidence 666666666666666666554
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.32 E-value=6.2e-11 Score=102.55 Aligned_cols=161 Identities=14% Similarity=0.056 Sum_probs=85.7
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhccCCC---CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036003 261 KVNTALIDMHAKCGRLDDAVSVFDNMSGK---DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337 (558)
Q Consensus 261 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 337 (558)
..+..+...+...|++++|...|+++.+. +...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 34444555566666666666666655432 34445555555555555555555555555431 123344444444444
Q ss_pred ccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 036003 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVI 417 (558)
Q Consensus 338 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 417 (558)
..|++++|.+.++++... . +.+...+..+...+...|++++|...+
T Consensus 88 ~~~~~~~A~~~~~~~~~~--~--------------------------------~~~~~~~~~~a~~~~~~~~~~~A~~~~ 133 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEA--N--------------------------------PINFNVRFRLGVALDNLGRFDEAIDSF 133 (186)
T ss_dssp HHTCHHHHHHHHHHHHHH--C--------------------------------TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhc--C--------------------------------cHhHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 445555555554444431 1 223445555555555666666666666
Q ss_pred HHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 418 ERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 418 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
+++++..|.++..+..++.+|...|++++|.+.+++..+
T Consensus 134 ~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 172 (186)
T 3as5_A 134 KIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHFKKANE 172 (186)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 666665555555566666666666666666666655543
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.32 E-value=4.3e-11 Score=125.45 Aligned_cols=163 Identities=13% Similarity=0.127 Sum_probs=124.2
Q ss_pred CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHH
Q 036003 290 DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPD-EITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCM 368 (558)
Q Consensus 290 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~l 368 (558)
+..+|+.+...|.+.|++++|+..|++..+. .|+ ...+..+..++.+.|++++|.+.|++..+. -+-+...|..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l--~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nL 83 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEV--FPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHH
Confidence 3456777777777777777777777777763 443 567777777778888888888888777752 22346777788
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHH
Q 036003 369 VDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWED 446 (558)
Q Consensus 369 i~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 446 (558)
..+|.+.|++++|++.|++. ...| +...|+.+..++...|++++|++.|+++++++|+++.+|..++.+|...|++++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 88888888888888888776 3334 567888888888888888888888888888888888888888888888888888
Q ss_pred HHHHHHHHHh
Q 036003 447 VDYLRKLMKD 456 (558)
Q Consensus 447 A~~~~~~m~~ 456 (558)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888777653
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.30 E-value=2.3e-10 Score=98.93 Aligned_cols=168 Identities=15% Similarity=0.063 Sum_probs=128.4
Q ss_pred HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHHhHHHHHHHH
Q 036003 225 DVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS---GKDTQAWSAMIVAY 301 (558)
Q Consensus 225 ~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~ 301 (558)
...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++. ..+...|..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADAPDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHH
Confidence 3467778888999999999999999887654 3467788889999999999999999999875 33678899999999
Q ss_pred HHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHH
Q 036003 302 ATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381 (558)
Q Consensus 302 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 381 (558)
...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. . +.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~-~~--------------------- 142 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGL-R-PN--------------------- 142 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TT---------------------
T ss_pred HHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhc-C-cc---------------------
Confidence 99999999999999998853 335667777777788888888888888777653 1 12
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCc
Q 036003 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHG 428 (558)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 428 (558)
+...+..+...+...|++++|...++++++..|.+.
T Consensus 143 -----------~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~ 178 (186)
T 3as5_A 143 -----------EGKVHRAIAFSYEQMGRHEEALPHFKKANELDEGAS 178 (186)
T ss_dssp -----------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCCC
T ss_pred -----------chHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCch
Confidence 334455556666666666666666666666655543
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.29 E-value=1.5e-09 Score=105.97 Aligned_cols=227 Identities=7% Similarity=0.053 Sum_probs=160.7
Q ss_pred HHHHHHHCCCccHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHhCC-----C-CchhHHH
Q 036003 196 IITAYARSSRPNEALSLFRELQERNL-KPT----DVTMLSALSSCALLGSLDLGKWIHEYIKKYGL-----D-KYVKVNT 264 (558)
Q Consensus 196 li~~~~~~g~~~~A~~~~~~m~~~~~-~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~-~~~~~~~ 264 (558)
....+...|++++|+..|++..+... .++ ...+..+..++...|+++.|...+++..+... . ....+++
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 186 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLF 186 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHH
Confidence 34445667777777777777654310 122 23566667777777788777777777654311 1 1244666
Q ss_pred HHHHHHHhcCCHHHHHHHHhccCC-----C----CHHhHHHHHHHHHHCCChHHHHHHHHHHHH-----CCCCCCHHHHH
Q 036003 265 ALIDMHAKCGRLDDAVSVFDNMSG-----K----DTQAWSAMIVAYATHGQGHKSILMFEEMMK-----AQVSPDEITFL 330 (558)
Q Consensus 265 ~l~~~~~~~g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~~~~ 330 (558)
.+..+|...|++++|.+.|++..+ . ...+++.+...|...|++++|+..+++..+ .. +....++.
T Consensus 187 ~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~-~~~~~~~~ 265 (378)
T 3q15_A 187 VIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVP-DLLPKVLF 265 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCG-GGHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCC-hhHHHHHH
Confidence 777888888888888887776542 1 234677888888999999999999988876 32 22357788
Q ss_pred HHHHHHHccCChHHHHHHHHHchhhcCC---CCChhHHHHHHHHHhhcCC---HHHHHHHHHhCCCCCC-HHHHHHHHHH
Q 036003 331 GLLYACSHTGLVDEGWNYFYSMRDKYGI---VPGIKHYGCMVDLLGRAGR---LDEAYRFIDELPIKST-PILWRTLLSS 403 (558)
Q Consensus 331 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~---~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~~~~~~-~~~~~~l~~~ 403 (558)
.+...+.+.|++++|...+++..+...- +.....+..+...|...++ +.+|+.++++....|+ ...+..+...
T Consensus 266 ~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 345 (378)
T 3q15_A 266 GLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKKNLHAYIEACARSAAAV 345 (378)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhCCChhHHHHHHHHHHHH
Confidence 8888999999999999999988764222 1223456667777888888 8899999998754443 3466778899
Q ss_pred HHhcCCHHHHHHHHHHHHcc
Q 036003 404 CSSHNNLGLAKQVIERIFEL 423 (558)
Q Consensus 404 ~~~~g~~~~a~~~~~~~~~~ 423 (558)
|...|++++|...|+++++.
T Consensus 346 y~~~g~~~~A~~~~~~al~~ 365 (378)
T 3q15_A 346 FESSCHFEQAAAFYRKVLKA 365 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999998764
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.28 E-value=5.3e-11 Score=119.80 Aligned_cols=211 Identities=11% Similarity=-0.002 Sum_probs=122.3
Q ss_pred cHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCCh-HHHHHHHhccCC---CCcchHHHHHHHHHHCCCccHHHHHHH
Q 036003 139 ALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDV-EAARRIFENISE---PCVVSYNAIITAYARSSRPNEALSLFR 214 (558)
Q Consensus 139 ~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~ 214 (558)
.++++.+.++...... +.+...+..+...|...|++ ++|++.|++..+ .+..+|..+...|.+.|++++|.+.|+
T Consensus 83 ~~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 83 EMEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3455555555443322 23455555566666666666 666666655543 234455555566666666666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHhcc---------CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 036003 215 ELQERNLKPTDVTMLSALSSCALL---------GSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDN 285 (558)
Q Consensus 215 ~m~~~~~~p~~~~~~~ll~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 285 (558)
+..+. .|+...+..+..++... |++++|...++++.+.. +.
T Consensus 162 ~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~--------------------------- 211 (474)
T 4abn_A 162 GALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VL--------------------------- 211 (474)
T ss_dssp HHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TT---------------------------
T ss_pred HHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CC---------------------------
Confidence 55543 34445555555555555 55555555555554432 12
Q ss_pred cCCCCHHhHHHHHHHHHHC--------CChHHHHHHHHHHHHCCCCC----CHHHHHHHHHHHHccCChHHHHHHHHHch
Q 036003 286 MSGKDTQAWSAMIVAYATH--------GQGHKSILMFEEMMKAQVSP----DEITFLGLLYACSHTGLVDEGWNYFYSMR 353 (558)
Q Consensus 286 ~~~~~~~~~~~li~~~~~~--------~~~~~a~~~~~~m~~~g~~p----~~~~~~~ll~~~~~~g~~~~a~~~~~~~~ 353 (558)
+...|..+..+|... |++++|+..|++..+. .| +...+..+..+|...|++++|.+.|++..
T Consensus 212 ----~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al 285 (474)
T 4abn_A 212 ----DGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKV--DRKASSNPDLHLNRATLHKYEESYGEALEGFSQAA 285 (474)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHH--CGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ----CHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344455555555555 6667777777776663 33 55667777777777777777777777776
Q ss_pred hhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 036003 354 DKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL 388 (558)
Q Consensus 354 ~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 388 (558)
+. .+.+...+..+..++...|++++|.+.+.++
T Consensus 286 ~l--~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~~ 318 (474)
T 4abn_A 286 AL--DPAWPEPQQREQQLLEFLSRLTSLLESKGKT 318 (474)
T ss_dssp HH--CTTCHHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred Hh--CCCCHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 53 2334556677777777777777777766665
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.25 E-value=2.2e-10 Score=103.24 Aligned_cols=188 Identities=10% Similarity=-0.035 Sum_probs=112.8
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccCC----CCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCC-HHHHHHHH
Q 036003 259 YVKVNTALIDMHAKCGRLDDAVSVFDNMSG----KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPD-EITFLGLL 333 (558)
Q Consensus 259 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll 333 (558)
++..+......+...|++++|...|++..+ ++...+..+..++...|++++|+..|++..+. .|+ ...+..+.
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~ 83 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK--NYNLANAYIGKS 83 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--TCSHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh--CcchHHHHHHHH
Confidence 345556666677777777777777766542 45555555666777777777777777776663 343 35566666
Q ss_pred HHHHccCChHHHHHHHHHchhhcCCCCCh-------hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHH
Q 036003 334 YACSHTGLVDEGWNYFYSMRDKYGIVPGI-------KHYGCMVDLLGRAGRLDEAYRFIDEL-PIKST---PILWRTLLS 402 (558)
Q Consensus 334 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~---~~~~~~l~~ 402 (558)
.++...|++++|...+++..+. .+.+. ..|..+...+...|++++|++.|++. ...|+ ...|..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 6677777777777777766653 12223 34555666666667777777776665 44444 345555555
Q ss_pred HHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhC
Q 036003 403 SCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 403 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
++... +...++++..+.+.+...|..+. ....+.+++|...+++..+.
T Consensus 162 ~~~~~-----~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l 209 (228)
T 4i17_A 162 LFYNN-----GADVLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTL 209 (228)
T ss_dssp HHHHH-----HHHHHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHH-----HHHHHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhc
Confidence 55432 33445555555544433333322 33445569999999988874
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=99.24 E-value=5.3e-10 Score=100.65 Aligned_cols=203 Identities=11% Similarity=0.041 Sum_probs=159.0
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC---CHHhHHHHHH
Q 036003 223 PTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK---DTQAWSAMIV 299 (558)
Q Consensus 223 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~ 299 (558)
.|+..+......+...|++++|...|++..+...+++...+..+..++...|++++|+..|++..+. +...|..+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKNYNLANAYIGKSA 84 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCSHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhCcchHHHHHHHHH
Confidence 4667888889999999999999999999999875467777777999999999999999999987633 5678999999
Q ss_pred HHHHCCChHHHHHHHHHHHHCCCCCC-H-------HHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCC---hhHHHHH
Q 036003 300 AYATHGQGHKSILMFEEMMKAQVSPD-E-------ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPG---IKHYGCM 368 (558)
Q Consensus 300 ~~~~~~~~~~a~~~~~~m~~~g~~p~-~-------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~~l 368 (558)
.|...|++++|+..+++..+. .|+ . ..|..+...+...|++++|...|++..+ ..|+ ...+..+
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~---~~p~~~~~~~~~~l 159 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA--VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATD---VTSKKWKTDALYSL 159 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTT---SSCHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHh---cCCCcccHHHHHHH
Confidence 999999999999999999984 343 4 4577777888999999999999999985 3454 5677788
Q ss_pred HHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHH
Q 036003 369 VDLLGRAGRLDEAYRFIDEL-P-IKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNL 437 (558)
Q Consensus 369 i~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 437 (558)
...|...|+. +++++ . ...+...+.... ....+.+++|...++++++++|.++.+...+..+
T Consensus 160 ~~~~~~~~~~-----~~~~a~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 160 GVLFYNNGAD-----VLRKATPLASSNKEKYASEK--AKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHHHH-----HHHHHGGGTTTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHH-----HHHHHHhcccCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHH
Confidence 8888766543 23332 1 122344444333 3445679999999999999999987766665544
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.20 E-value=5.7e-09 Score=101.62 Aligned_cols=225 Identities=13% Similarity=-0.015 Sum_probs=124.5
Q ss_pred HHHHHHhcCCCchHHHHHHHHhHHCCCCCCcc----cHHHHHHHHHhcCcccHHHHHHHHHHHHHhCC---CC--hHHHH
Q 036003 92 TMARGYSRSKTPIRAIFLFVELLNSGLLPDDY----SFPSLLKACACVGAEALEEGKQLHCFAIKLGL---NS--NLYVC 162 (558)
Q Consensus 92 ~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~----~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~---~~--~~~~~ 162 (558)
.....+...|++++|...+++........+.. .++.+...+... |++++|...+++..+... .+ ...++
T Consensus 19 ~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 19 LRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCK--GELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHH--TCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhc--CcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 33445567788888888888877653211211 334444555566 888888888877765321 11 12334
Q ss_pred HHHHHHHHhCCChHHHHHHHhccCC-------C----CcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCC--C--CHHH
Q 036003 163 TTLINLYAECSDVEAARRIFENISE-------P----CVVSYNAIITAYARSSRPNEALSLFRELQERNLK--P--TDVT 227 (558)
Q Consensus 163 ~~ll~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~--p--~~~~ 227 (558)
..+...+...|++++|...+++..+ + ....+..+...+...|++++|...+++....... + ....
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 5566777777887777777766542 1 1123455666667777777777777765543211 1 1234
Q ss_pred HHHHHHHHhccCChHHHHHHHHHHHHhCCCCch-hHHH-----HHHHHHHhcCCHHHHHHHHhccCCCC-------HHhH
Q 036003 228 MLSALSSCALLGSLDLGKWIHEYIKKYGLDKYV-KVNT-----ALIDMHAKCGRLDDAVSVFDNMSGKD-------TQAW 294 (558)
Q Consensus 228 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~ 294 (558)
+..+...+...|++++|...+++.......++. ..+. ..+..+...|++++|...++.....+ ...+
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 256 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 256 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHH
Confidence 555666666777777777777766543211111 1111 12233556666666666666554321 1123
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHH
Q 036003 295 SAMIVAYATHGQGHKSILMFEEMM 318 (558)
Q Consensus 295 ~~li~~~~~~~~~~~a~~~~~~m~ 318 (558)
..+...+...|++++|...+++..
T Consensus 257 ~~la~~~~~~g~~~~A~~~l~~a~ 280 (373)
T 1hz4_A 257 RNIARAQILLGEFEPAEIVLEELN 280 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Confidence 444555555556555555555543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.18 E-value=5.5e-10 Score=104.75 Aligned_cols=187 Identities=9% Similarity=-0.032 Sum_probs=120.1
Q ss_pred HHHhcCCHHHHHHHHhccCCC---------CHHhHHHHHHHHHHCCChHHHHHHHHHHHHC----CCCC-CHHHHHHHHH
Q 036003 269 MHAKCGRLDDAVSVFDNMSGK---------DTQAWSAMIVAYATHGQGHKSILMFEEMMKA----QVSP-DEITFLGLLY 334 (558)
Q Consensus 269 ~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p-~~~~~~~ll~ 334 (558)
.|...|++++|...|++..+- ...+|+.+..+|...|++++|+..|++..+. |-.. -..++..+..
T Consensus 46 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~ 125 (292)
T 1qqe_A 46 IYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGE 125 (292)
T ss_dssp HHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345556666555555544311 1345666777777777777777777666542 1110 1346777778
Q ss_pred HHHcc-CChHHHHHHHHHchhhcCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC---CH-----HHHHHH
Q 036003 335 ACSHT-GLVDEGWNYFYSMRDKYGIVPG----IKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS---TP-----ILWRTL 400 (558)
Q Consensus 335 ~~~~~-g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~---~~-----~~~~~l 400 (558)
.|... |++++|...|++..+...-..+ ..++..+...|.+.|++++|+..|++. ...| .. ..|..+
T Consensus 126 ~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~l 205 (292)
T 1qqe_A 126 ILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKK 205 (292)
T ss_dssp HHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHH
T ss_pred HHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 88885 9999999888887753111111 356778888999999999999999886 2222 21 256778
Q ss_pred HHHHHhcCCHHHHHHHHHHHHccCCCCccc-----HHhHHHHHH--hcCChHHHHHHHHHHH
Q 036003 401 LSSCSSHNNLGLAKQVIERIFELDDSHGGD-----YVILSNLCA--RAGRWEDVDYLRKLMK 455 (558)
Q Consensus 401 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----~~~l~~~~~--~~g~~~~A~~~~~~m~ 455 (558)
..++...|++++|...+++++++.|..... +..++..|. ..+++++|...|+++.
T Consensus 206 g~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~ 267 (292)
T 1qqe_A 206 GLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (292)
T ss_dssp HHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCC
Confidence 888899999999999999999988876543 344556664 4567888888876553
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.13 E-value=2.9e-10 Score=105.74 Aligned_cols=154 Identities=8% Similarity=0.028 Sum_probs=88.5
Q ss_pred HHCCCccHHHHHHHHHHHC-------CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh------CC-CCchhHHHHH
Q 036003 201 ARSSRPNEALSLFRELQER-------NLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY------GL-DKYVKVNTAL 266 (558)
Q Consensus 201 ~~~g~~~~A~~~~~~m~~~-------~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 266 (558)
...|++++|+..|++..+. ..+.....+..+...+...|++++|...++++.+. +- +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 3456777777777665442 11223446667777777788888888777777654 21 2234556666
Q ss_pred HHHHHhcCCHHHHHHHHhccCCC-----------CHHhHHHHHHHHHHCCChHHHHHHHHHHHHC------CCCCC-HHH
Q 036003 267 IDMHAKCGRLDDAVSVFDNMSGK-----------DTQAWSAMIVAYATHGQGHKSILMFEEMMKA------QVSPD-EIT 328 (558)
Q Consensus 267 ~~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p~-~~~ 328 (558)
...|...|++++|.+.|++..+. ...+|..+...|...|++++|...+++..+. +-.|+ ..+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 77777777777777666654311 2334555556666666666666666665542 11221 234
Q ss_pred HHHHHHHHHccCChHHHHHHHHHchh
Q 036003 329 FLGLLYACSHTGLVDEGWNYFYSMRD 354 (558)
Q Consensus 329 ~~~ll~~~~~~g~~~~a~~~~~~~~~ 354 (558)
+..+...+...|++++|..++++..+
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 55555555566666666666655543
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.13 E-value=1.7e-09 Score=101.47 Aligned_cols=243 Identities=13% Similarity=-0.045 Sum_probs=132.7
Q ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHhC--C-ChHHHHHHHhccCCCCcchHHHHHHHHHHCCCccHHHHHHHHHHH
Q 036003 142 EGKQLHCFAIKLGLNSNLYVCTTLINLYAEC--S-DVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQE 218 (558)
Q Consensus 142 ~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~--g-~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~ 218 (558)
+|.+++++..+.- +++...+ .+.+. + ++++|...|++. ...|...|++++|...|.+..+
T Consensus 3 ~a~~~~~~a~k~~-~~~~~~~-----~~~~~~~~~~~~~A~~~~~~a-----------~~~~~~~g~~~~A~~~~~~al~ 65 (292)
T 1qqe_A 3 DPVELLKRAEKKG-VPSSGFM-----KLFSGSDSYKFEEAADLCVQA-----------ATIYRLRKELNLAGDSFLKAAD 65 (292)
T ss_dssp CHHHHHHHHHHHS-SCCCTHH-----HHHSCCSHHHHHHHHHHHHHH-----------HHHHHHTTCTHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHh-CcCCCcc-----hhcCCCCCccHHHHHHHHHHH-----------HHHHHHcCCHHHHHHHHHHHHH
Confidence 3566666666652 3222222 22233 2 488888887663 6778888888888888877654
Q ss_pred C----CCCCC-HHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHHh
Q 036003 219 R----NLKPT-DVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQA 293 (558)
Q Consensus 219 ~----~~~p~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 293 (558)
. |-+++ ..+|..+..+|...|++++|...+++..+.. ...|+...+ ..+
T Consensus 66 ~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~---------------~~~g~~~~~-----------a~~ 119 (292)
T 1qqe_A 66 YQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIF---------------THRGQFRRG-----------ANF 119 (292)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---------------HHTTCHHHH-----------HHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH---------------HHcCCHHHH-----------HHH
Confidence 2 21111 3466677777777777777777776665421 111222211 123
Q ss_pred HHHHHHHHHHC-CChHHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCCh-----
Q 036003 294 WSAMIVAYATH-GQGHKSILMFEEMMKAQVS-PD----EITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGI----- 362 (558)
Q Consensus 294 ~~~li~~~~~~-~~~~~a~~~~~~m~~~g~~-p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~----- 362 (558)
|+.+...|... |++++|+..|++..+.... .+ ..++..+...+...|++++|...|++......-.+..
T Consensus 120 ~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 199 (292)
T 1qqe_A 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLK 199 (292)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHH
Confidence 45555566664 6666666666665542100 01 2345566666667777777777777666531111111
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCH------HHHHHHHHHHH--hcCCHHHHHHHHHHHHccCCCC
Q 036003 363 KHYGCMVDLLGRAGRLDEAYRFIDEL-PIKSTP------ILWRTLLSSCS--SHNNLGLAKQVIERIFELDDSH 427 (558)
Q Consensus 363 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~------~~~~~l~~~~~--~~g~~~~a~~~~~~~~~~~~~~ 427 (558)
..|..+..++...|++++|...|++. ...|+. ..+..++.++. ..+++++|+..|+++..++|..
T Consensus 200 ~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~~~l~~~~ 273 (292)
T 1qqe_A 200 DYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFMRLDKWK 273 (292)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSSCCCHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccCCccHHHH
Confidence 14555666666777777777777665 333321 12333444443 3456677777776666665543
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.10 E-value=2.6e-09 Score=99.18 Aligned_cols=149 Identities=11% Similarity=0.099 Sum_probs=101.7
Q ss_pred hCCChHHHHHHHhccCC-------C----CcchHHHHHHHHHHCCCccHHHHHHHHHHHC------CCCC-CHHHHHHHH
Q 036003 171 ECSDVEAARRIFENISE-------P----CVVSYNAIITAYARSSRPNEALSLFRELQER------NLKP-TDVTMLSAL 232 (558)
Q Consensus 171 ~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~------~~~p-~~~~~~~ll 232 (558)
..|++++|+..|++..+ + ...++..+...|...|++++|+..+++..+. +-.| ...++..+.
T Consensus 13 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~ 92 (283)
T 3edt_B 13 GLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLA 92 (283)
T ss_dssp CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHH
Confidence 45666655555554432 2 2346777778888888888888888877653 1122 344677777
Q ss_pred HHHhccCChHHHHHHHHHHHHh------C-CCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-----------CHHhH
Q 036003 233 SSCALLGSLDLGKWIHEYIKKY------G-LDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK-----------DTQAW 294 (558)
Q Consensus 233 ~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~ 294 (558)
..+...|++++|...++++.+. . .+.....+..+...|...|++++|...|++..+. ...++
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 172 (283)
T 3edt_B 93 VLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTK 172 (283)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHH
Confidence 8888888888888888877654 1 1233566777788888888888888887766422 24467
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHH
Q 036003 295 SAMIVAYATHGQGHKSILMFEEMMK 319 (558)
Q Consensus 295 ~~li~~~~~~~~~~~a~~~~~~m~~ 319 (558)
..+...|...|++++|...+++..+
T Consensus 173 ~~la~~~~~~g~~~~A~~~~~~~l~ 197 (283)
T 3edt_B 173 NNLASCYLKQGKYQDAETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 7777888888888888888887765
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.09 E-value=1.6e-09 Score=113.56 Aligned_cols=162 Identities=10% Similarity=0.133 Sum_probs=127.0
Q ss_pred chhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHH
Q 036003 259 YVKVNTALIDMHAKCGRLDDAVSVFDNMSG---KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPD-EITFLGLLY 334 (558)
Q Consensus 259 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~ 334 (558)
+...++.|..+|.+.|++++|++.|++..+ .+..+|+.+..+|.+.|++++|+..|++..+. .|+ ...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l--~P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI--SPTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHH
Confidence 456677777777777777777777776542 35677888888888888888888888888873 454 577888888
Q ss_pred HHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 036003 335 ACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGL 412 (558)
Q Consensus 335 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~ 412 (558)
++...|++++|.+.|++..+. -+-+...|..+..+|.+.|++++|++.|++. ...| +...+..+..++...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l--~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQI--NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHHH
Confidence 888888888888888888753 2335678888888899999999999988886 3344 56788889999999999999
Q ss_pred HHHHHHHHHccC
Q 036003 413 AKQVIERIFELD 424 (558)
Q Consensus 413 a~~~~~~~~~~~ 424 (558)
|.+.+++++++.
T Consensus 164 A~~~~~kal~l~ 175 (723)
T 4gyw_A 164 YDERMKKLVSIV 175 (723)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC
Confidence 999999887654
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.09 E-value=9.7e-09 Score=94.44 Aligned_cols=204 Identities=10% Similarity=-0.026 Sum_probs=125.9
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhccCCC---C---HHhHHHHHHHHHHCCChHHHHHHHHHHHHCCC-CCC-HHHHHH
Q 036003 260 VKVNTALIDMHAKCGRLDDAVSVFDNMSGK---D---TQAWSAMIVAYATHGQGHKSILMFEEMMKAQV-SPD-EITFLG 331 (558)
Q Consensus 260 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~-~~~~~~ 331 (558)
...+-.+...+.+.|++++|...|+.+.+. + ...+..+..+|.+.|++++|+..|++..+... .|. ...+..
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 444445666666777777777777666532 2 44566666667777777777777777666321 112 234555
Q ss_pred HHHHHHc--------cCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHH
Q 036003 332 LLYACSH--------TGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSS 403 (558)
Q Consensus 332 ll~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~ 403 (558)
+..++.. .|++++|...|+++.+.+ +.+......+.......+.. ...+..+...
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la~~ 157 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY--PNHELVDDATQKIRELRAKL---------------ARKQYEAARL 157 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC--TTCTTHHHHHHHHHHHHHHH---------------HHHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHHC--cCchhHHHHHHHHHHHHHHH---------------HHHHHHHHHH
Confidence 5555555 666666666666666531 11122222211111000000 1124667888
Q ss_pred HHhcCCHHHHHHHHHHHHccCCCCc---ccHHhHHHHHHhc----------CChHHHHHHHHHHHhCCCccCCcccEEEE
Q 036003 404 CSSHNNLGLAKQVIERIFELDDSHG---GDYVILSNLCARA----------GRWEDVDYLRKLMKDRGVLKVPGCSSIEV 470 (558)
Q Consensus 404 ~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~----------g~~~~A~~~~~~m~~~g~~~~~~~~~~~~ 470 (558)
|...|++++|+..|+++++..|.++ ..+..++.+|... |++++|...++++.+...
T Consensus 158 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p----------- 226 (261)
T 3qky_A 158 YERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFP----------- 226 (261)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCT-----------
T ss_pred HHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCC-----------
Confidence 9999999999999999999988854 4788889999876 899999999999887422
Q ss_pred CCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHH
Q 036003 471 NNVVREFFSGDGVHSYSTDLQKALDELVKELKM 503 (558)
Q Consensus 471 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~ 503 (558)
.++...++...+.++...+..
T Consensus 227 ------------~~~~~~~a~~~l~~~~~~~~~ 247 (261)
T 3qky_A 227 ------------DSPLLRTAEELYTRARQRLTE 247 (261)
T ss_dssp ------------TCTHHHHHHHHHHHHHHHHHH
T ss_pred ------------CChHHHHHHHHHHHHHHHHHH
Confidence 334445666666666665543
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.08 E-value=1.4e-08 Score=93.46 Aligned_cols=239 Identities=11% Similarity=0.016 Sum_probs=143.1
Q ss_pred HHhCCChHHHHHHHhccCCCC-cchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHH
Q 036003 169 YAECSDVEAARRIFENISEPC-VVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWI 247 (558)
Q Consensus 169 ~~~~g~~~~A~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~ 247 (558)
..-.|.+..++.-..++...+ ...-.-+.++|...|++.... .-.|....+..+... ...+ +...
T Consensus 23 ~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~~~~---------~~~~~~~a~~~la~~-~~~~----a~~~ 88 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQSQD---------PTSKLGKVLDLYVQF-LDTK----NIEE 88 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCCCCC---------SSSTTHHHHHHHHHH-HTTT----CCHH
T ss_pred HHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCccCC---------CCCHHHHHHHHHHHH-hccc----HHHH
Confidence 344566666666555543322 122233456777777766421 112333233333322 2222 4555
Q ss_pred HHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC-----CCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCC
Q 036003 248 HEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSG-----KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQV 322 (558)
Q Consensus 248 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 322 (558)
+++....+ +++...+..+..++...|++++|++++.+... .+...+..++..+.+.|+.+.|.+.+++|.+ .
T Consensus 89 l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~ 165 (310)
T 3mv2_B 89 LENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--A 165 (310)
T ss_dssp HHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--H
T ss_pred HHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--c
Confidence 66555444 33444445677777778888888888777632 2455667777888888888888888888877 4
Q ss_pred CC-----CHHHHHHHHHHH--HccC--ChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC--
Q 036003 323 SP-----DEITFLGLLYAC--SHTG--LVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PI-- 390 (558)
Q Consensus 323 ~p-----~~~~~~~ll~~~--~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-- 390 (558)
.| +..+...|..++ ...| ++.+|..+|+++... .|+......+..++.+.|++++|.+.++.+ ..
T Consensus 166 ~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p 242 (310)
T 3mv2_B 166 IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYY 242 (310)
T ss_dssp SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHH
T ss_pred CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcc
Confidence 56 355556666553 2223 788888888887653 344233334444777888888888887754 21
Q ss_pred ---------CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcc
Q 036003 391 ---------KSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGG 429 (558)
Q Consensus 391 ---------~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 429 (558)
..++.+...++......|+ +|.++++++.+..|.++.
T Consensus 243 ~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~P~hp~ 288 (310)
T 3mv2_B 243 SVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLDHEHAF 288 (310)
T ss_dssp HTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTTCCCHH
T ss_pred cccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhCCCChH
Confidence 2245566556655556676 778888888888888753
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=99.04 E-value=4.4e-09 Score=85.25 Aligned_cols=124 Identities=15% Similarity=0.177 Sum_probs=66.6
Q ss_pred HHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcC
Q 036003 331 GLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL--PIKSTPILWRTLLSSCSSHN 408 (558)
Q Consensus 331 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g 408 (558)
.+...+...|++++|..+++++.+. .+.+...+..+...+...|++++|.++++++ ..+.+...+..+...+...|
T Consensus 6 ~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 83 (136)
T 2fo7_A 6 NLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQG 83 (136)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHc--CCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHhc
Confidence 3344444444444444444444432 1223344444444555555555555555444 11223445555666666666
Q ss_pred CHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 409 NLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 409 ~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
++++|.+.++++.+..|.+...+..++.+|.+.|++++|...++++.+
T Consensus 84 ~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 84 DYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 666666666666666666666666666666666666666666666554
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=99.04 E-value=1.3e-08 Score=93.71 Aligned_cols=240 Identities=12% Similarity=0.040 Sum_probs=167.3
Q ss_pred HHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCH
Q 036003 197 ITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRL 276 (558)
Q Consensus 197 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 276 (558)
|+-..-.|++..++.-...+.. .........+.+++...|+++.. ..-.|....+..+. .|...+
T Consensus 20 ikn~fy~G~yq~~i~e~~~~~~---~~~~~~~~~~~Rs~iAlg~~~~~---------~~~~~~~~a~~~la-~~~~~~-- 84 (310)
T 3mv2_B 20 IKQNYYTGNFVQCLQEIEKFSK---VTDNTLLFYKAKTLLALGQYQSQ---------DPTSKLGKVLDLYV-QFLDTK-- 84 (310)
T ss_dssp HHHHHTTTCHHHHTHHHHTSSC---CCCHHHHHHHHHHHHHTTCCCCC---------CSSSTTHHHHHHHH-HHHTTT--
T ss_pred HHHHHHhhHHHHHHHHHHhcCc---cchHHHHHHHHHHHHHcCCCccC---------CCCCHHHHHHHHHH-HHhccc--
Confidence 3445557888888774333321 12223344455777777766531 12233333444333 344433
Q ss_pred HHHHHHHhccCC---CCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHc
Q 036003 277 DDAVSVFDNMSG---KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP-DEITFLGLLYACSHTGLVDEGWNYFYSM 352 (558)
Q Consensus 277 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~ 352 (558)
|+..|++..+ ++..++..+..++...|++++|++++.+.+..|..+ +...+..++..+.+.|+.+.|.+.+++|
T Consensus 85 --a~~~l~~l~~~~~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 --NIEELENLLKDKQNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp --CCHHHHHTTTTSCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred --HHHHHHHHHhcCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 6777776653 455666788899999999999999999987765423 4567888899999999999999999999
Q ss_pred hhhcCCCC-----ChhHHHHHHHHH--hhcC--CHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 036003 353 RDKYGIVP-----GIKHYGCMVDLL--GRAG--RLDEAYRFIDEL-PIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFE 422 (558)
Q Consensus 353 ~~~~~~~~-----~~~~~~~li~~~--~~~g--~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 422 (558)
.+. .| +..+...|+.++ ...| ++++|..+|+++ ...|+..+...++.++.+.|++++|.+.++.+.+
T Consensus 163 ~~~---~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~ 239 (310)
T 3mv2_B 163 TNA---IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTFPTWKTQLGLLNLHLQQRNIAEAQGIVELLLS 239 (310)
T ss_dssp HHH---SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTSCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHS
T ss_pred Hhc---CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhCCCcccHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 753 55 345555666553 3334 999999999999 4446633444455589999999999999998877
Q ss_pred c----------CCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhCC
Q 036003 423 L----------DDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRG 458 (558)
Q Consensus 423 ~----------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 458 (558)
. +|.++.++..++......|+ +|.++++++.+..
T Consensus 240 ~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 240 DYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp HHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred hcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 6 48888899888877778887 8999999998743
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=99.02 E-value=4.2e-09 Score=96.94 Aligned_cols=203 Identities=12% Similarity=0.034 Sum_probs=144.9
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCC--chhHHHHHHHHHHhcCCHHHHHHHHhccCCC------CHHhH
Q 036003 223 PTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDK--YVKVNTALIDMHAKCGRLDDAVSVFDNMSGK------DTQAW 294 (558)
Q Consensus 223 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~------~~~~~ 294 (558)
.+...+..+...+.+.|++++|...|+.+.+..... ....+..+..+|.+.|++++|...|++..+. ...++
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 456677788888999999999999999998875222 1567777999999999999999999988632 24567
Q ss_pred HHHHHHHHH--------CCChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHH
Q 036003 295 SAMIVAYAT--------HGQGHKSILMFEEMMKAQVSPDE-ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHY 365 (558)
Q Consensus 295 ~~li~~~~~--------~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 365 (558)
..+..++.. .|++++|+..|++..+. .|+. ... .+...+..+... ....+
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~--------------~a~~~~~~~~~~-----~~~~~ 151 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR--YPNHELVD--------------DATQKIRELRAK-----LARKQ 151 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH--CTTCTTHH--------------HHHHHHHHHHHH-----HHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH--CcCchhHH--------------HHHHHHHHHHHH-----HHHHH
Confidence 788888988 99999999999999984 3432 111 111111111111 11235
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhc----------CCHHHHHHHHHHHHccCCCCcc-
Q 036003 366 GCMVDLLGRAGRLDEAYRFIDEL-PIKST----PILWRTLLSSCSSH----------NNLGLAKQVIERIFELDDSHGG- 429 (558)
Q Consensus 366 ~~li~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~- 429 (558)
..+...|.+.|++++|+..|+++ ...|+ ...+..+..+|... |++++|...++++++..|+++.
T Consensus 152 ~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~ 231 (261)
T 3qky_A 152 YEAARLYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLL 231 (261)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHH
Confidence 56778888999999999998886 22232 45677777888766 8899999999999999998754
Q ss_pred --cHHhHHHHHHhcCChHH
Q 036003 430 --DYVILSNLCARAGRWED 446 (558)
Q Consensus 430 --~~~~l~~~~~~~g~~~~ 446 (558)
++..+..++.+.+++++
T Consensus 232 ~~a~~~l~~~~~~~~~~~~ 250 (261)
T 3qky_A 232 RTAEELYTRARQRLTELEG 250 (261)
T ss_dssp HHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhhh
Confidence 33444444444444433
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.99 E-value=1.7e-08 Score=81.70 Aligned_cols=131 Identities=17% Similarity=0.256 Sum_probs=102.6
Q ss_pred hHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHH
Q 036003 293 AWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLL 372 (558)
Q Consensus 293 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 372 (558)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|..+++++... .+.+...+..+...+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH--CCCchHHHHHHHHHH
Confidence 46677778888888888888888887653 235667777788888888888888888888763 234566778888888
Q ss_pred hhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 036003 373 GRAGRLDEAYRFIDEL-PI-KSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS 426 (558)
Q Consensus 373 ~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 426 (558)
...|++++|.++++++ .. +.+...+..+...+...|++++|...++++++.+|.
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 8899999998888876 22 335678888888999999999999999999887765
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.98 E-value=4.2e-08 Score=87.92 Aligned_cols=182 Identities=8% Similarity=0.030 Sum_probs=115.6
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHhccCC--C-C---HHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCC-CCH-HHHHHHH
Q 036003 262 VNTALIDMHAKCGRLDDAVSVFDNMSG--K-D---TQAWSAMIVAYATHGQGHKSILMFEEMMKAQVS-PDE-ITFLGLL 333 (558)
Q Consensus 262 ~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~~-~~~~~ll 333 (558)
.+..+...+.+.|++++|+..|+++.+ | + ...+..+..+|.+.|++++|+..|+++.+.... +.. ..+..+.
T Consensus 6 ~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~g 85 (225)
T 2yhc_A 6 EIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMRG 85 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHHH
Confidence 344466777888888888888887753 2 1 246777778888888888888888888774321 111 1333344
Q ss_pred HHHHc------------------cCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHH
Q 036003 334 YACSH------------------TGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPI 395 (558)
Q Consensus 334 ~~~~~------------------~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~ 395 (558)
.++.. .|++++|...|+++.+. .+-+...+.++.....-.+.. ..
T Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~l~~~~~~~---------------~~ 148 (225)
T 2yhc_A 86 LTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKRLVFLKDRL---------------AK 148 (225)
T ss_dssp HHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHHHHHHHHHH---------------HH
T ss_pred HHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHHHHHHHHHH---------------HH
Confidence 44433 34555555555555532 111122211111100000000 01
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCc---ccHHhHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 036003 396 LWRTLLSSCSSHNNLGLAKQVIERIFELDDSHG---GDYVILSNLCARAGRWEDVDYLRKLMKDRGVL 460 (558)
Q Consensus 396 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 460 (558)
....+...+...|++++|...|+++++..|.++ .++..++.+|.+.|++++|.+.++.+...+..
T Consensus 149 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 149 YEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 113456778899999999999999999998875 56889999999999999999999998876554
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.95 E-value=2.1e-08 Score=93.58 Aligned_cols=174 Identities=7% Similarity=-0.009 Sum_probs=135.5
Q ss_pred HHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHchhh
Q 036003 277 DDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP-DEITFLGLLYACSHTGLVDEGWNYFYSMRDK 355 (558)
Q Consensus 277 ~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 355 (558)
+...+.+......+...+..+...+.+.|++++|...|++..+. .| +...+..+...+...|++++|...++++...
T Consensus 103 ~~l~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~ 180 (287)
T 3qou_A 103 EAIRALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQL--SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ 180 (287)
T ss_dssp HHHHHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG
T ss_pred HHHHHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh
Confidence 34444444444445666777888888899999999999998874 34 5577888888999999999999999988753
Q ss_pred cCCCCChhHHHH-HHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC--ccc
Q 036003 356 YGIVPGIKHYGC-MVDLLGRAGRLDEAYRFIDEL-PIK-STPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH--GGD 430 (558)
Q Consensus 356 ~~~~~~~~~~~~-li~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~ 430 (558)
.|+...... ....+.+.++.++|...+++. ... .+...+..+...+...|++++|...|+++++.+|.+ ...
T Consensus 181 ---~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a 257 (287)
T 3qou_A 181 ---DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQT 257 (287)
T ss_dssp ---GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHH
T ss_pred ---hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchH
Confidence 445433322 233466777888888888876 223 467888999999999999999999999999999987 778
Q ss_pred HHhHHHHHHhcCChHHHHHHHHHHH
Q 036003 431 YVILSNLCARAGRWEDVDYLRKLMK 455 (558)
Q Consensus 431 ~~~l~~~~~~~g~~~~A~~~~~~m~ 455 (558)
+..++.+|...|+.++|...+++..
T Consensus 258 ~~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 258 RXTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHH
Confidence 9999999999999999998887654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.95 E-value=3.3e-09 Score=111.64 Aligned_cols=169 Identities=10% Similarity=-0.027 Sum_probs=136.3
Q ss_pred HhcCCHHHHHHHHhccC-----------CCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 036003 271 AKCGRLDDAVSVFDNMS-----------GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHT 339 (558)
Q Consensus 271 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 339 (558)
...|++++|++.|++.. ..+...|..+..+|.+.|++++|+..|++..+.. +-+...+..+..++...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 67789999999888776 3366778888889999999999999999988742 22567788888888999
Q ss_pred CChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHH
Q 036003 340 GLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVI 417 (558)
Q Consensus 340 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~ 417 (558)
|++++|...|++..+. -+.+...|..+..+|.+.|++++ ++.|++. ...| +...|..+..++...|++++|.+.|
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~ 557 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVRTL 557 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 9999999999998863 23457788888999999999999 8888886 3334 5678888999999999999999999
Q ss_pred HHHHccCCCCcccHHhHHHHHHhcCC
Q 036003 418 ERIFELDDSHGGDYVILSNLCARAGR 443 (558)
Q Consensus 418 ~~~~~~~~~~~~~~~~l~~~~~~~g~ 443 (558)
+++++++|.+..++..++.+|...|+
T Consensus 558 ~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 558 DEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HhhcccCcccHHHHHHHHHHHHccCC
Confidence 99999999988888888888877655
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.93 E-value=6.3e-08 Score=85.77 Aligned_cols=173 Identities=10% Similarity=-0.050 Sum_probs=128.0
Q ss_pred HHHHHhccCC-CCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC----ChHHHHHHHHHch
Q 036003 279 AVSVFDNMSG-KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTG----LVDEGWNYFYSMR 353 (558)
Q Consensus 279 A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g----~~~~a~~~~~~~~ 353 (558)
|.+.|++..+ .++.++..+...|...+++++|+.+|++..+.| +...+..|...|.. + ++++|...|++..
T Consensus 5 A~~~~~~aa~~g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAGDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 3344444332 356667777777777788888888888887765 45666666666666 5 7888888888886
Q ss_pred hhcCCCCChhHHHHHHHHHhh----cCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh----cCCHHHHHHHHHHHH
Q 036003 354 DKYGIVPGIKHYGCMVDLLGR----AGRLDEAYRFIDEL-PIKST---PILWRTLLSSCSS----HNNLGLAKQVIERIF 421 (558)
Q Consensus 354 ~~~~~~~~~~~~~~li~~~~~----~g~~~~A~~~~~~~-~~~~~---~~~~~~l~~~~~~----~g~~~~a~~~~~~~~ 421 (558)
+. + +...+..|...|.. .+++++|+++|++. ...+. +..+..|...|.. .+++++|...|+++.
T Consensus 81 ~~-g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EA-G---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HT-T---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HC-C---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 53 3 56677777777776 78889999998887 33332 6788888888887 788999999999998
Q ss_pred ccCCCCcccHHhHHHHHHhc-C-----ChHHHHHHHHHHHhCCCc
Q 036003 422 ELDDSHGGDYVILSNLCARA-G-----RWEDVDYLRKLMKDRGVL 460 (558)
Q Consensus 422 ~~~~~~~~~~~~l~~~~~~~-g-----~~~~A~~~~~~m~~~g~~ 460 (558)
+. +.++..+..|..+|... | ++++|...|++..+.|..
T Consensus 157 ~~-~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~ 200 (212)
T 3rjv_A 157 SL-SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFD 200 (212)
T ss_dssp HT-SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCH
T ss_pred Hc-CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCH
Confidence 88 55566788888888654 3 899999999988877654
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.91 E-value=1.3e-09 Score=90.72 Aligned_cols=139 Identities=11% Similarity=-0.010 Sum_probs=93.0
Q ss_pred HHHCCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHH
Q 036003 301 YATHGQGHKSILMFEEMMKAQVSPD-EITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLD 379 (558)
Q Consensus 301 ~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 379 (558)
+...|++++|+..++.... ..|+ ...+..+...|.+.|++++|.+.|++..+. -+-+...|..+..+|.+.|+++
T Consensus 7 ~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~--~p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 7 RRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV--QERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCchH
Confidence 3344556666666665544 2222 233445566666777777777777776652 2335666777777777777777
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHH-HHHHHccCCCCcccHHhHHHHHHhcCC
Q 036003 380 EAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQV-IERIFELDDSHGGDYVILSNLCARAGR 443 (558)
Q Consensus 380 ~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~~~~~~~~l~~~~~~~g~ 443 (558)
+|+..|++. ...| +...|..+...|.+.|++++|.+. ++++++++|.++.+|......+...|+
T Consensus 83 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 83 KAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 777777765 3334 567788888888888888766554 588888888888888888888777774
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.87 E-value=1.5e-06 Score=87.30 Aligned_cols=351 Identities=9% Similarity=0.004 Sum_probs=177.1
Q ss_pred hHHHHHHHHhhcCCCCCCHHHHHHHHccCCC--CCcccHHHHHHHHhcCCC-chHHHHHHHHhHHC-CCCC-CcccHHHH
Q 036003 54 NVLTKLINFCTQNPTTSSMEHAHLLFDRIPE--PDIVLFNTMARGYSRSKT-PIRAIFLFVELLNS-GLLP-DDYSFPSL 128 (558)
Q Consensus 54 ~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~g~-~~~A~~~~~~m~~~-g~~p-~~~~~~~l 128 (558)
.+|...+..+-. |+++.+..+|++... |++..|...+....+.++ .+....+|+..... |..| +...|...
T Consensus 16 ~vyer~l~~~P~----~~~e~~~~iferal~~~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Y 91 (493)
T 2uy1_A 16 AIMEHARRLYMS----KDYRSLESLFGRCLKKSYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEY 91 (493)
T ss_dssp HHHHHHHHHHHT----TCHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHH
T ss_pred HHHHHHHHHCCC----CCHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHH
Confidence 344444554433 578888888887665 777778877777666553 35566677776654 4333 34455555
Q ss_pred HHHHHhc--CcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHH-------------hCCChHHHHHHHhccCC----CC
Q 036003 129 LKACACV--GAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYA-------------ECSDVEAARRIFENISE----PC 189 (558)
Q Consensus 129 l~~~~~~--~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~-------------~~g~~~~A~~~~~~~~~----~~ 189 (558)
+.-+... ..++.+.+.++|+.++......-...|......-. ..+.+..|..+++.+.. .+
T Consensus 92 i~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s 171 (493)
T 2uy1_A 92 IEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWS 171 (493)
T ss_dssp HHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhcc
Confidence 5443210 01567778888888876321111122222111100 01122333333333221 13
Q ss_pred cchHHHHHHHHHHCC-C------ccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhH
Q 036003 190 VVSYNAIITAYARSS-R------PNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKV 262 (558)
Q Consensus 190 ~~~~~~li~~~~~~g-~------~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 262 (558)
...|...+..-...+ . .+.+..+|+++... .+-+...|...+..+.+.|+.+.|..++++.... +.+...
T Consensus 172 ~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l 248 (493)
T 2uy1_A 172 VKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFL 248 (493)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHH
T ss_pred HHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHH
Confidence 335555444322221 1 23456788887764 3445667777777777888899999999988887 444433
Q ss_pred HHHHHHHHHhcCCHHHH-HHHHhccC--C-------C---CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHH
Q 036003 263 NTALIDMHAKCGRLDDA-VSVFDNMS--G-------K---DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITF 329 (558)
Q Consensus 263 ~~~l~~~~~~~g~~~~A-~~~~~~~~--~-------~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 329 (558)
+.. |....+.++. ..+.+... . + ....|...+....+.++.+.|..+|++. +. ...+...|
T Consensus 249 ~~~----y~~~~e~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~~~~~~v~ 322 (493)
T 2uy1_A 249 SLY----YGLVMDEEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-EGVGPHVF 322 (493)
T ss_dssp HHH----HHHHTTCTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-SCCCHHHH
T ss_pred HHH----HHhhcchhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-CCCChHHH
Confidence 322 2221111111 11111110 0 0 1123444555555555666666666666 21 11223333
Q ss_pred HHHHHHHHc-cCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcC
Q 036003 330 LGLLYACSH-TGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHN 408 (558)
Q Consensus 330 ~~ll~~~~~-~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g 408 (558)
......-.. .++.+.|..+|+...+.+ +.+...+...++...+.|+.+.|..+|+++. .....|...+..-...|
T Consensus 323 i~~A~lE~~~~~d~~~ar~ife~al~~~--~~~~~~~~~yid~e~~~~~~~~aR~l~er~~--k~~~lw~~~~~fE~~~G 398 (493)
T 2uy1_A 323 IYCAFIEYYATGSRATPYNIFSSGLLKH--PDSTLLKEEFFLFLLRIGDEENARALFKRLE--KTSRMWDSMIEYEFMVG 398 (493)
T ss_dssp HHHHHHHHHHHCCSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC--CBHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH--HHHHHHHHHHHHHHHCC
Confidence 221111111 224666666666666542 2223344555555566666666666666662 24555555555555566
Q ss_pred CHHHHHHHHHHHH
Q 036003 409 NLGLAKQVIERIF 421 (558)
Q Consensus 409 ~~~~a~~~~~~~~ 421 (558)
+.+.+..+++++.
T Consensus 399 ~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 399 SMELFRELVDQKM 411 (493)
T ss_dssp CHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHH
Confidence 6666666665554
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.86 E-value=1.2e-07 Score=97.77 Aligned_cols=159 Identities=11% Similarity=0.001 Sum_probs=117.5
Q ss_pred CCHHHHHHHHhccCCC---CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHH
Q 036003 274 GRLDDAVSVFDNMSGK---DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFY 350 (558)
Q Consensus 274 g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~ 350 (558)
|++++|.+.|++..+. +...|..+...|.+.|++++|...|++..+.. +-+...+..+..++...|++++|.+.++
T Consensus 3 g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~ 81 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLLQ 81 (568)
T ss_dssp ------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 6677777777776532 56678888888888888888888888888742 2246778888888889999999999999
Q ss_pred HchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc---CCHHHHHHHHHHHHccCC
Q 036003 351 SMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSH---NNLGLAKQVIERIFELDD 425 (558)
Q Consensus 351 ~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~~~~~ 425 (558)
+..+. .+.+...+..+..+|.+.|++++|.+.|++. ...| +...+..+...+... |++++|.+.++++++.+|
T Consensus 82 ~al~~--~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~p 159 (568)
T 2vsy_A 82 QASDA--APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQGV 159 (568)
T ss_dssp HHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHTC
T ss_pred HHHhc--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcCC
Confidence 88863 2345778888999999999999999999887 3233 577888899999999 999999999999999999
Q ss_pred CCcccHHhHH
Q 036003 426 SHGGDYVILS 435 (558)
Q Consensus 426 ~~~~~~~~l~ 435 (558)
.+...|..+.
T Consensus 160 ~~~~~~~~l~ 169 (568)
T 2vsy_A 160 GAVEPFAFLS 169 (568)
T ss_dssp CCSCHHHHTT
T ss_pred cccChHHHhC
Confidence 8887777665
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.86 E-value=7e-08 Score=91.04 Aligned_cols=219 Identities=10% Similarity=-0.010 Sum_probs=155.3
Q ss_pred CCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 036003 203 SSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSV 282 (558)
Q Consensus 203 ~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 282 (558)
.|++++|.+++++..+.. +.. .+...++++.|...|.++ ...|...|++++|...
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~---------~~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~ 58 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS---------FMKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDA 58 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC---------SSSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc---------ccCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHH
Confidence 467888888888776531 111 011147788887777654 4567788899888888
Q ss_pred HhccCCC-----C----HHhHHHHHHHHHHCCChHHHHHHHHHHHHCC---CCCC--HHHHHHHHHHHHccCChHHHHHH
Q 036003 283 FDNMSGK-----D----TQAWSAMIVAYATHGQGHKSILMFEEMMKAQ---VSPD--EITFLGLLYACSHTGLVDEGWNY 348 (558)
Q Consensus 283 ~~~~~~~-----~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g---~~p~--~~~~~~ll~~~~~~g~~~~a~~~ 348 (558)
|.+..+- + ..+|+.+...|...|++++|+..|++..+.- -.+. ..++..+...|.. |++++|...
T Consensus 59 ~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~ 137 (307)
T 2ifu_A 59 YLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHL 137 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHH
Confidence 8766421 1 3468888999999999999999999876521 1121 3567788888888 999999999
Q ss_pred HHHchhhcCCCC----ChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHH
Q 036003 349 FYSMRDKYGIVP----GIKHYGCMVDLLGRAGRLDEAYRFIDEL----PIKST----PILWRTLLSSCSSHNNLGLAKQV 416 (558)
Q Consensus 349 ~~~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~----~~~~~~l~~~~~~~g~~~~a~~~ 416 (558)
|++......-.. ...++..+...|.+.|++++|+..|++. +..++ ...+..++.++...|++++|...
T Consensus 138 ~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~ 217 (307)
T 2ifu_A 138 YQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKC 217 (307)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 998876321111 1467888899999999999999999886 11122 23566777788888999999999
Q ss_pred HHHHHccCCCCccc-----HHhHHHHHHhcCChHHHHH
Q 036003 417 IERIFELDDSHGGD-----YVILSNLCARAGRWEDVDY 449 (558)
Q Consensus 417 ~~~~~~~~~~~~~~-----~~~l~~~~~~~g~~~~A~~ 449 (558)
|++++ ..|....+ ...++..| ..|+.+.+.+
T Consensus 218 ~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~ 253 (307)
T 2ifu_A 218 VRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLR 253 (307)
T ss_dssp HHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHH
T ss_pred HHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHH
Confidence 99999 88865543 33455555 5677666555
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.85 E-value=3e-08 Score=102.38 Aligned_cols=151 Identities=14% Similarity=0.010 Sum_probs=117.7
Q ss_pred CCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHH
Q 036003 304 HGQGHKSILMFEEMMKAQVSP-DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAY 382 (558)
Q Consensus 304 ~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~ 382 (558)
.|++++|+..|++..+. .| +...+..+...+...|++++|.+.|++..+ -.+.+...+..+...|...|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRH--RPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 47889999999998874 34 467888999999999999999999999986 33446788999999999999999999
Q ss_pred HHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhc---CChHHHHHHHHHHHhC
Q 036003 383 RFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARA---GRWEDVDYLRKLMKDR 457 (558)
Q Consensus 383 ~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~A~~~~~~m~~~ 457 (558)
+.+++. ...| +...+..+..++...|++++|.+.++++++.+|.+...+..++.+|... |++++|.+.+++..+.
T Consensus 78 ~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 78 VLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 999987 3333 5788999999999999999999999999999999999999999999999 9999999999988664
Q ss_pred C
Q 036003 458 G 458 (558)
Q Consensus 458 g 458 (558)
+
T Consensus 158 ~ 158 (568)
T 2vsy_A 158 G 158 (568)
T ss_dssp T
T ss_pred C
Confidence 4
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.84 E-value=6.3e-08 Score=85.52 Aligned_cols=129 Identities=9% Similarity=0.022 Sum_probs=94.7
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHH
Q 036003 294 WSAMIVAYATHGQGHKSILMFEEMMKAQVSP-DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLL 372 (558)
Q Consensus 294 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 372 (558)
++.+..+|.+.|++++|+..|++..+. .| +...+..+..++...|++++|...|+++.+. -+.+...+..+...|
T Consensus 57 ~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~ 132 (208)
T 3urz_A 57 ATELALAYKKNRNYDKAYLFYKELLQK--APNNVDCLEACAEMQVCRGQEKDALRMYEKILQL--EADNLAANIFLGNYY 132 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHH
Confidence 344788888999999999999998884 34 5678888888899999999999999998863 234567788888877
Q ss_pred hhcCC--HHHHHHHHHhCCCCCCH--HHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC
Q 036003 373 GRAGR--LDEAYRFIDELPIKSTP--ILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH 427 (558)
Q Consensus 373 ~~~g~--~~~A~~~~~~~~~~~~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 427 (558)
...|. .+.+...++... .|++ ..+.....++...|++++|...|++++++.|.+
T Consensus 133 ~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l~P~~ 190 (208)
T 3urz_A 133 YLTAEQEKKKLETDYKKLS-SPTKMQYARYRDGLSKLFTTRYEKARNSLQKVILRFPST 190 (208)
T ss_dssp HHHHHHHHHHHHHHHC----CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTTSCCH
T ss_pred HHHhHHHHHHHHHHHHHHh-CCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCH
Confidence 66554 345566666653 3333 344555666777889999999999999998863
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.83 E-value=3.1e-08 Score=84.91 Aligned_cols=154 Identities=7% Similarity=-0.003 Sum_probs=87.5
Q ss_pred HHHHHHCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHH-Hhhc
Q 036003 298 IVAYATHGQGHKSILMFEEMMKAQVSP-DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDL-LGRA 375 (558)
Q Consensus 298 i~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~ 375 (558)
...+.+.|++++|+..|++..+. .| +...+..+...+...|++++|...++++... .|+...+..+... +...
T Consensus 13 a~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 13 VSELLQQGEHAQALNVIQTLSDE--LQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHTTCHHHHHHHHHTSCHH--HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHHHhh
Confidence 33444444455555444444331 12 2344444444555555555555555554432 1122222111111 1111
Q ss_pred CCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC--cccHHhHHHHHHhcCChHHHHHHH
Q 036003 376 GRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH--GGDYVILSNLCARAGRWEDVDYLR 451 (558)
Q Consensus 376 g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~A~~~~ 451 (558)
+...+|...+++. ...| +...+..+..++...|++++|...|+++++.+|.. +..+..++.+|...|+.++|...|
T Consensus 88 ~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y 167 (176)
T 2r5s_A 88 AAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKY 167 (176)
T ss_dssp HTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHH
T ss_pred cccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHH
Confidence 1222345555554 2234 56778888888888888888888888888888764 447888888888888888888888
Q ss_pred HHHHh
Q 036003 452 KLMKD 456 (558)
Q Consensus 452 ~~m~~ 456 (558)
++...
T Consensus 168 ~~al~ 172 (176)
T 2r5s_A 168 RRQLY 172 (176)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77643
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.83 E-value=9.3e-08 Score=100.62 Aligned_cols=188 Identities=14% Similarity=0.064 Sum_probs=147.2
Q ss_pred hccCChHHHHHHHHHHH--------HhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCHHhHHHHHHHHHHC
Q 036003 236 ALLGSLDLGKWIHEYIK--------KYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSG---KDTQAWSAMIVAYATH 304 (558)
Q Consensus 236 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~ 304 (558)
...|++++|...++++. +. .+.+...+..+..+|.+.|++++|++.|++..+ .+...|..+..+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAERVGWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccCcchHHHHHHHHHHHHHc
Confidence 77899999999999988 33 245677888899999999999999999998763 3788899999999999
Q ss_pred CChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHH
Q 036003 305 GQGHKSILMFEEMMKAQVSP-DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYR 383 (558)
Q Consensus 305 ~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 383 (558)
|++++|+..|++..+. .| +...+..+..++.+.|++++ .+.|++..+. -+.+...|..+..+|.+.|++++|.+
T Consensus 481 g~~~~A~~~~~~al~l--~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDT--FPGELAPKLALAATAELAGNTDE-HKFYQTVWST--NDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp TCHHHHHHHHHHHHHH--STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHh--CCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 9999999999999984 45 45788889999999999999 9999999863 34467889999999999999999999
Q ss_pred HHHhC-CCCCC-HHHHHHHHHHHHhcCC-----HHHHHHHHHHHHccCCCCcc
Q 036003 384 FIDEL-PIKST-PILWRTLLSSCSSHNN-----LGLAKQVIERIFELDDSHGG 429 (558)
Q Consensus 384 ~~~~~-~~~~~-~~~~~~l~~~~~~~g~-----~~~a~~~~~~~~~~~~~~~~ 429 (558)
.|++. ...|+ ...+..+..++...++ .+...+..+...+..+..+.
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~l~~~~~~~~~ 608 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRSTSEVTEEQIRDAARRVEALPPTEPR 608 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC-------CCHHHHHHHHHHHHTSCTTSTT
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCCCCCCCHHHHHHHHHHHhhCCCCcHH
Confidence 99998 55665 5677778888776665 23334444444444443333
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.81 E-value=6e-08 Score=80.33 Aligned_cols=98 Identities=12% Similarity=-0.023 Sum_probs=87.4
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHH
Q 036003 361 GIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLC 438 (558)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 438 (558)
+...+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..|+++++++|.++.+|..++.+|
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHH
Confidence 3567778888899999999999999987 3334 6789999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhCC
Q 036003 439 ARAGRWEDVDYLRKLMKDRG 458 (558)
Q Consensus 439 ~~~g~~~~A~~~~~~m~~~g 458 (558)
.+.|++++|...|++..+..
T Consensus 115 ~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999998754
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.81 E-value=1e-08 Score=85.31 Aligned_cols=121 Identities=12% Similarity=-0.016 Sum_probs=101.2
Q ss_pred HHHHHccCChHHHHHHHHHchhhcCCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 036003 333 LYACSHTGLVDEGWNYFYSMRDKYGIVP-GIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNN 409 (558)
Q Consensus 333 l~~~~~~g~~~~a~~~~~~~~~~~~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~ 409 (558)
...+...|++++|+..++.... ..| +...+-.+...|.+.|++++|++.|++. ...| +..+|..+..++...|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCc
Confidence 3445567889999999888764 233 3456678899999999999999999987 3344 67899999999999999
Q ss_pred HHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHH-HHHHHh
Q 036003 410 LGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYL-RKLMKD 456 (558)
Q Consensus 410 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~-~~~m~~ 456 (558)
+++|+..|+++++++|.++.+|..++.+|.+.|++++|.+. +++..+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~ 128 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAK 128 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999887765 577766
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.79 E-value=1.6e-07 Score=82.87 Aligned_cols=129 Identities=11% Similarity=0.037 Sum_probs=76.6
Q ss_pred HHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 036003 195 AIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCG 274 (558)
Q Consensus 195 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 274 (558)
.+...|.+.|++++|+..|++..+.. +-+...+..+..++...|++++|...|+++.+.. +.+...+..+..+|...|
T Consensus 59 ~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~ 136 (208)
T 3urz_A 59 ELALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTA 136 (208)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHh
Confidence 36667777777777777777776642 3355666677777777777777777777777664 334556666666665444
Q ss_pred C--HHHHHHHHhccCCCCHH--hHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHH
Q 036003 275 R--LDDAVSVFDNMSGKDTQ--AWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEI 327 (558)
Q Consensus 275 ~--~~~A~~~~~~~~~~~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 327 (558)
+ .+.+...++....++.. .+.....++...|++++|+..|++..+ +.|+..
T Consensus 137 ~~~~~~~~~~~~~~~~~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~ 191 (208)
T 3urz_A 137 EQEKKKLETDYKKLSSPTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTE 191 (208)
T ss_dssp HHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHH
T ss_pred HHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHH
Confidence 3 34455566655554432 233344455556666667766666665 445543
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.78 E-value=7.6e-08 Score=82.43 Aligned_cols=155 Identities=9% Similarity=-0.033 Sum_probs=109.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCC---CCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHcc
Q 036003 264 TALIDMHAKCGRLDDAVSVFDNMSG---KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYA-CSHT 339 (558)
Q Consensus 264 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~-~~~~ 339 (558)
..+...+.+.|++++|...|++..+ .+...|..+...+...|++++|+..|++.... .|+...+..+... +...
T Consensus 10 ~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~--~p~~~~~~~~~~~~~~~~ 87 (176)
T 2r5s_A 10 LKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLE--YQDNSYKSLIAKLELHQQ 87 (176)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG--GCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc--cCChHHHHHHHHHHHHhh
Confidence 3456677788888888888887763 26677888888888888888888888887663 3343332222111 1222
Q ss_pred CChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC---HHHHHHHHHHHHhcCCHHHHHH
Q 036003 340 GLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKST---PILWRTLLSSCSSHNNLGLAKQ 415 (558)
Q Consensus 340 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~---~~~~~~l~~~~~~~g~~~~a~~ 415 (558)
+....|...+++..+. .+.+...+..+...+...|++++|...|+++ ...|+ ...+..+...+...|+.++|..
T Consensus 88 ~~~~~a~~~~~~al~~--~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 88 AAESPELKRLEQELAA--NPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HTSCHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred cccchHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 2333467778777752 2335778888888999999999999999886 44443 5678888889999999999999
Q ss_pred HHHHHHc
Q 036003 416 VIERIFE 422 (558)
Q Consensus 416 ~~~~~~~ 422 (558)
.|++.+.
T Consensus 166 ~y~~al~ 172 (176)
T 2r5s_A 166 KYRRQLY 172 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9888763
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.78 E-value=1.1e-07 Score=85.23 Aligned_cols=186 Identities=10% Similarity=-0.069 Sum_probs=132.6
Q ss_pred CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCC--chhHHHHHHHHHHhcCCHHHHHHHHhccCC--C-CH---HhHH
Q 036003 224 TDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDK--YVKVNTALIDMHAKCGRLDDAVSVFDNMSG--K-DT---QAWS 295 (558)
Q Consensus 224 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~---~~~~ 295 (558)
+...+..+...+.+.|++++|...|+.+.+..... ....+..+..+|.+.|++++|+..|+++.+ | +. .++.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 34456667778899999999999999999865322 235677789999999999999999999763 2 22 2455
Q ss_pred HHHHHHHH------------------CCChHHHHHHHHHHHHCCCCCCHH-HHHHHHHHHHccCChHHHHHHHHHchhhc
Q 036003 296 AMIVAYAT------------------HGQGHKSILMFEEMMKAQVSPDEI-TFLGLLYACSHTGLVDEGWNYFYSMRDKY 356 (558)
Q Consensus 296 ~li~~~~~------------------~~~~~~a~~~~~~m~~~g~~p~~~-~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 356 (558)
.+..++.. .|++++|+..|+++.+. .|+.. ....... ...+...+.
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~--~P~~~~a~~a~~~----------l~~~~~~~~--- 147 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG--YPNSQYTTDATKR----------LVFLKDRLA--- 147 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTT--CTTCTTHHHHHHH----------HHHHHHHHH---
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH--CcCChhHHHHHHH----------HHHHHHHHH---
Confidence 56666654 57899999999999984 45432 2211110 001111111
Q ss_pred CCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCccc
Q 036003 357 GIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKST----PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGD 430 (558)
Q Consensus 357 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 430 (558)
.....+...|.+.|++++|...|+++ ...|+ ...+..+..++.+.|+.++|.+.++++....|.+...
T Consensus 148 ------~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~~ 220 (225)
T 2yhc_A 148 ------KYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLEH 220 (225)
T ss_dssp ------HHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCCC
T ss_pred ------HHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchhh
Confidence 12235677889999999999999987 22333 2568888999999999999999999999988877543
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.77 E-value=2.6e-07 Score=81.75 Aligned_cols=174 Identities=9% Similarity=-0.077 Sum_probs=109.0
Q ss_pred HHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC-CHHhHHHHHHHHHHCC----ChHHHHHHHHHHH
Q 036003 244 GKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK-DTQAWSAMIVAYATHG----QGHKSILMFEEMM 318 (558)
Q Consensus 244 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~~~----~~~~a~~~~~~m~ 318 (558)
|.++|++..+.| +...+..|...|...+++++|..+|++..+. +..++..+...|.. + ++++|+.+|++..
T Consensus 5 A~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~ 80 (212)
T 3rjv_A 5 PGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQGDGDALALLAQLKIR-NPQQADYPQARQLAEKAV 80 (212)
T ss_dssp TTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHH
Confidence 334444444432 3334444555555556666666666554433 45555556655555 4 6777777777776
Q ss_pred HCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHchhhcCCC-CChhHHHHHHHHHhh----cCCHHHHHHHHHhC-
Q 036003 319 KAQVSPDEITFLGLLYACSH----TGLVDEGWNYFYSMRDKYGIV-PGIKHYGCMVDLLGR----AGRLDEAYRFIDEL- 388 (558)
Q Consensus 319 ~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~-~~~~~~~~li~~~~~----~g~~~~A~~~~~~~- 388 (558)
+.| +...+..|...|.. .+++++|...|++..+. +.. .+...+..|...|.. .+++++|..+|++.
T Consensus 81 ~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~ 156 (212)
T 3rjv_A 81 EAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARD-SESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSS 156 (212)
T ss_dssp HTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSS-TTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH
T ss_pred HCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHc-CCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHH
Confidence 654 45566666666665 67788888888777643 211 025677777777777 77888888888876
Q ss_pred CCCCCHHHHHHHHHHHHhc-C-----CHHHHHHHHHHHHccCC
Q 036003 389 PIKSTPILWRTLLSSCSSH-N-----NLGLAKQVIERIFELDD 425 (558)
Q Consensus 389 ~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~~ 425 (558)
...++...+..|...|... | +.++|...|+++.+.+.
T Consensus 157 ~~~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 157 SLSRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HTSCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HcCCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 2234556677777777653 3 78888888888887764
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.77 E-value=1.9e-06 Score=80.11 Aligned_cols=215 Identities=11% Similarity=0.100 Sum_probs=99.6
Q ss_pred cHHHHHHHHHHHCCCCCC-HHHHHHHHHHHhccC--ChHHHHHHHHHHHHhCCCCchhHHHHHHHHH----Hhc---CCH
Q 036003 207 NEALSLFRELQERNLKPT-DVTMLSALSSCALLG--SLDLGKWIHEYIKKYGLDKYVKVNTALIDMH----AKC---GRL 276 (558)
Q Consensus 207 ~~A~~~~~~m~~~~~~p~-~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---g~~ 276 (558)
++|+++++.++.. .|+ ...++.--.++...+ ++++++.+++.+.... +-+..+|+.-..++ ... +++
T Consensus 50 ~~aL~~t~~~L~~--nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~~ 126 (306)
T 3dra_A 50 ERALHITELGINE--LASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFDP 126 (306)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCCT
T ss_pred HHHHHHHHHHHHH--CcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCCH
Confidence 4666666666654 233 334454445555555 6666666666665543 22333343333222 222 444
Q ss_pred HHHHHHHhccCC---CCHHhHHHHHHHHHHCCChH--HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 036003 277 DDAVSVFDNMSG---KDTQAWSAMIVAYATHGQGH--KSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYS 351 (558)
Q Consensus 277 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~--~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 351 (558)
++++++++.+.+ ++..+|+.-.-.+.+.|.++ ++++.++++.+.... |...|+.-...+.+.+..
T Consensus 127 ~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~--------- 196 (306)
T 3dra_A 127 YREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHL--------- 196 (306)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGG---------
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcccc---------
Confidence 555555444432 24444444444444444444 444444444443221 333333333333333320
Q ss_pred chhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHH-HHHHHHHHHHccC---C
Q 036003 352 MRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PI-KSTPILWRTLLSSCSSHNNLG-LAKQVIERIFELD---D 425 (558)
Q Consensus 352 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~-~a~~~~~~~~~~~---~ 425 (558)
.....++++++.++++ .. ..|...|+.+...+.+.|+.. .+..+.+++.+.+ |
T Consensus 197 ---------------------~~~~~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~ 255 (306)
T 3dra_A 197 ---------------------ATDNTIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQV 255 (306)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEE
T ss_pred ---------------------chhhhHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCC
Confidence 0000045555555444 11 224555555555555555432 2334555554444 4
Q ss_pred CCcccHHhHHHHHHhcCChHHHHHHHHHHH
Q 036003 426 SHGGDYVILSNLCARAGRWEDVDYLRKLMK 455 (558)
Q Consensus 426 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 455 (558)
.++.++..++++|.+.|+.++|.++++.+.
T Consensus 256 ~s~~al~~la~~~~~~~~~~~A~~~~~~l~ 285 (306)
T 3dra_A 256 TSSFALETLAKIYTQQKKYNESRTVYDLLK 285 (306)
T ss_dssp SCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHccCCHHHHHHHHHHHH
Confidence 455555566666666666666666666654
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.77 E-value=2.3e-07 Score=87.45 Aligned_cols=94 Identities=12% Similarity=0.021 Sum_probs=48.9
Q ss_pred ccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh-CCChHHHHHHHhccCCCCcchHHHHHHHHHHCCCccHHHHHHHHH
Q 036003 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAE-CSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFREL 216 (558)
Q Consensus 138 ~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~-~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m 216 (558)
|++++|.+++++..+..- .. +.+ .++++.|...|++ ....|...|++++|...|.+.
T Consensus 5 ~~~~eA~~~~~~a~k~~~-~~----------~~~~~~~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~a 62 (307)
T 2ifu_A 5 QKISEAHEHIAKAEKYLK-TS----------FMKWKPDYDSAASEYAK-----------AAVAFKNAKQLEQAKDAYLQE 62 (307)
T ss_dssp HHHHHHHHHHHHHHHHHC-CC----------SSSCSCCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHcc-cc----------ccCCCCCHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHH
Confidence 666677777766655321 10 111 3566666666554 244566666666666666654
Q ss_pred HHC----CCCC-CHHHHHHHHHHHhccCChHHHHHHHHHHHH
Q 036003 217 QER----NLKP-TDVTMLSALSSCALLGSLDLGKWIHEYIKK 253 (558)
Q Consensus 217 ~~~----~~~p-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~ 253 (558)
.+. +-.+ -..+|..+..+|...|++++|...+++..+
T Consensus 63 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~ 104 (307)
T 2ifu_A 63 AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASV 104 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHH
Confidence 332 1000 022455555555666666666666655543
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.75 E-value=2.8e-08 Score=82.37 Aligned_cols=97 Identities=9% Similarity=-0.002 Sum_probs=83.6
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHH
Q 036003 361 GIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIK-STPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLC 438 (558)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 438 (558)
+...+..+...+.+.|++++|...|++. ... .+...|..+..++...|++++|+..|+++++++|.++.++..++.+|
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 4556777888888999999999999887 223 46788888999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhC
Q 036003 439 ARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 439 ~~~g~~~~A~~~~~~m~~~ 457 (558)
...|++++|.+.|++..+.
T Consensus 100 ~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 9999999999999988764
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.75 E-value=6.7e-06 Score=76.37 Aligned_cols=171 Identities=13% Similarity=-0.043 Sum_probs=120.8
Q ss_pred HHHhCCChHHHHHHHhccCC--C-CcchHHHHHHHHHHCC--CccHHHHHHHHHHHCCCCCCHHHHHHHHHHH----hcc
Q 036003 168 LYAECSDVEAARRIFENISE--P-CVVSYNAIITAYARSS--RPNEALSLFRELQERNLKPTDVTMLSALSSC----ALL 238 (558)
Q Consensus 168 ~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g--~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~----~~~ 238 (558)
...+....++|+.+++.+.. | +..+|+.--..+...| ++++++++++.+...+ +-+...|+.--..+ ...
T Consensus 42 ~~~~~e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l 120 (306)
T 3dra_A 42 LMKAEEYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELN 120 (306)
T ss_dssp HHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHT
T ss_pred HHHcCCCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhc
Confidence 33344445789999999876 3 4456888888888888 9999999999998864 33444555544444 444
Q ss_pred ---CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH--HHHHHHhccCC---CCHHhHHHHHHHHHHCCC----
Q 036003 239 ---GSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD--DAVSVFDNMSG---KDTQAWSAMIVAYATHGQ---- 306 (558)
Q Consensus 239 ---~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~--~A~~~~~~~~~---~~~~~~~~li~~~~~~~~---- 306 (558)
++++++..+++.+.+.. +-+..+|+--..++.+.|.++ ++++.++++.+ .|..+|+.....+...++
T Consensus 121 ~~~~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~N~sAW~~R~~ll~~l~~~~~~ 199 (306)
T 3dra_A 121 NNDFDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLKNNSAWSHRFFLLFSKKHLATD 199 (306)
T ss_dssp TTCCCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHSSGGGCCH
T ss_pred cccCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccchh
Confidence 78999999999999875 567778887777888889888 99999998874 377788877776666665
Q ss_pred --hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC
Q 036003 307 --GHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGL 341 (558)
Q Consensus 307 --~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~ 341 (558)
++++++.+++++.... -|...|+.+-..+.+.|+
T Consensus 200 ~~~~eEl~~~~~aI~~~p-~n~SaW~y~~~ll~~~~~ 235 (306)
T 3dra_A 200 NTIDEELNYVKDKIVKCP-QNPSTWNYLLGIHERFDR 235 (306)
T ss_dssp HHHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTC
T ss_pred hhHHHHHHHHHHHHHhCC-CCccHHHHHHHHHHhcCC
Confidence 5666666666665422 244555555555555554
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.74 E-value=2.7e-07 Score=81.61 Aligned_cols=126 Identities=8% Similarity=-0.019 Sum_probs=100.9
Q ss_pred HHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHh
Q 036003 329 FLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PI-KSTPILWRTLLSSCSS 406 (558)
Q Consensus 329 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~ 406 (558)
+..+...+...|++++|...|++.. .|+...+..+...|.+.|++++|.+.|++. .. +.+...|..+..++..
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~ 83 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQ 83 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHH
Confidence 4445556677788888888777663 456777888888888888888888888776 22 3356788888999999
Q ss_pred cCCHHHHHHHHHHHHccCCCCc----------------ccHHhHHHHHHhcCChHHHHHHHHHHHhCCC
Q 036003 407 HNNLGLAKQVIERIFELDDSHG----------------GDYVILSNLCARAGRWEDVDYLRKLMKDRGV 459 (558)
Q Consensus 407 ~g~~~~a~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 459 (558)
.|++++|.+.|+++++..|.+. ..+..++.+|.+.|++++|...+++..+...
T Consensus 84 ~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p 152 (213)
T 1hh8_A 84 TEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 152 (213)
T ss_dssp TTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred cccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCc
Confidence 9999999999999999887766 7889999999999999999999999887543
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.73 E-value=3.5e-07 Score=85.58 Aligned_cols=164 Identities=6% Similarity=-0.076 Sum_probs=118.8
Q ss_pred hHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHccCChHHHHHHHHHchhhcC--CCCC--hh
Q 036003 293 AWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDE-----ITFLGLLYACSHTGLVDEGWNYFYSMRDKYG--IVPG--IK 363 (558)
Q Consensus 293 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~--~~~~--~~ 363 (558)
.+...+..+...|++++|.+.+++..+.....+. ..+..+...+...|++++|...+++...... ..+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 3455667778888888888888887764322111 2233455566778899999999888765211 1111 45
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC------Cc
Q 036003 364 HYGCMVDLLGRAGRLDEAYRFIDEL----PIKST-----PILWRTLLSSCSSHNNLGLAKQVIERIFELDDS------HG 428 (558)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------~~ 428 (558)
+++.+...|...|++++|...|++. ...|+ ..++..+...|...|++++|...++++++..+. ..
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 7888889999999999999988775 11222 257888999999999999999999999876422 14
Q ss_pred ccHHhHHHHHHhcCChHHH-HHHHHHHHh
Q 036003 429 GDYVILSNLCARAGRWEDV-DYLRKLMKD 456 (558)
Q Consensus 429 ~~~~~l~~~~~~~g~~~~A-~~~~~~m~~ 456 (558)
.+|..++.+|.+.|++++| ...+++...
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 5688899999999999999 777877653
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.72 E-value=4.9e-07 Score=84.21 Aligned_cols=162 Identities=9% Similarity=0.020 Sum_probs=88.1
Q ss_pred CCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC--CHHhH-HHHHH
Q 036003 223 PTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK--DTQAW-SAMIV 299 (558)
Q Consensus 223 p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~-~~li~ 299 (558)
.+...+..+...+.+.|++++|...++++.+.. +.+...+..+..+|.+.|++++|...|+++... +.... .....
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI 193 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence 344455566666677777777777777776654 334555666777777777777777777766532 22211 11222
Q ss_pred HHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHH
Q 036003 300 AYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLD 379 (558)
Q Consensus 300 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 379 (558)
.+...++.++|+..+++..+.. +.+...+..+...+...|++++|...|.++.+...-..+...+..++..|...|+.+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 272 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGD 272 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTC
T ss_pred HHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCC
Confidence 2444555555666666555532 123445555555566666666666666665543111111344555555555555555
Q ss_pred HHHHHHH
Q 036003 380 EAYRFID 386 (558)
Q Consensus 380 ~A~~~~~ 386 (558)
+|...++
T Consensus 273 ~a~~~~r 279 (287)
T 3qou_A 273 ALASXYR 279 (287)
T ss_dssp HHHHHHH
T ss_pred cHHHHHH
Confidence 5544443
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.72 E-value=1e-07 Score=76.38 Aligned_cols=107 Identities=9% Similarity=-0.043 Sum_probs=63.1
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHH
Q 036003 328 TFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIK-STPILWRTLLSSCS 405 (558)
Q Consensus 328 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~ 405 (558)
.+......+.+.|++++|.+.|++..+. -+.+...|..+..+|.+.|++++|++.|++. ... .+...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKR--DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 4445555566666666666666665542 2334555556666666666666666666654 222 24556666666666
Q ss_pred hcCCHHHHHHHHHHHHccCCCCcccHHhHHH
Q 036003 406 SHNNLGLAKQVIERIFELDDSHGGDYVILSN 436 (558)
Q Consensus 406 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 436 (558)
..|++++|.+.|+++++++|.+..++..|..
T Consensus 93 ~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQVDPSNEEAREGVRN 123 (126)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHCcCCHHHHHHHHH
Confidence 6677777777777777666666655555443
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.70 E-value=9.9e-07 Score=82.44 Aligned_cols=161 Identities=5% Similarity=-0.049 Sum_probs=118.1
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHHCCC-CCCH----HHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCC----hhHHH
Q 036003 296 AMIVAYATHGQGHKSILMFEEMMKAQV-SPDE----ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPG----IKHYG 366 (558)
Q Consensus 296 ~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~----~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~ 366 (558)
..+..+...|++++|..++++..+... .|+. ..+..+...+...|++++|...|++......-.++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346677888888888888888876321 2221 12334566667778899999999888863111222 23688
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC------cccH
Q 036003 367 CMVDLLGRAGRLDEAYRFIDEL-----PIKST----PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH------GGDY 431 (558)
Q Consensus 367 ~li~~~~~~g~~~~A~~~~~~~-----~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~ 431 (558)
.+...|...|++++|..+|+++ ....+ ..++..+...|...|++++|...++++++..+.. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 8888999999999998888876 11112 2478889999999999999999999998765322 4578
Q ss_pred HhHHHHHHhcCC-hHHHHHHHHHHHh
Q 036003 432 VILSNLCARAGR-WEDVDYLRKLMKD 456 (558)
Q Consensus 432 ~~l~~~~~~~g~-~~~A~~~~~~m~~ 456 (558)
..++.+|.+.|+ +++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 899999999995 6999999887753
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.68 E-value=2.6e-07 Score=77.83 Aligned_cols=127 Identities=7% Similarity=-0.061 Sum_probs=94.1
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHH
Q 036003 328 TFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PI-KSTPILWRTLLSSCS 405 (558)
Q Consensus 328 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~ 405 (558)
.+..+...+...|++++|...|++.... .+.+...+..+...+...|++++|.+.+++. .. +.+...|..+..++.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4555566666777777777777776652 2335667777777777888888888877775 22 235678888888999
Q ss_pred hcCCHHHHHHHHHHHHccCCCCcccHHhHHHH--HHhcCChHHHHHHHHHHHh
Q 036003 406 SHNNLGLAKQVIERIFELDDSHGGDYVILSNL--CARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 406 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~m~~ 456 (558)
..|++++|...++++++..|.+...+..+..+ +.+.|++++|.+.+++...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999999998887777444444 7788999999998887643
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.67 E-value=6.8e-07 Score=78.99 Aligned_cols=144 Identities=8% Similarity=-0.031 Sum_probs=86.7
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChH
Q 036003 264 TALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVD 343 (558)
Q Consensus 264 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~ 343 (558)
..+...+...|++++|...|++...++...|..+...|...|++++|+..|++..+.. +.+...+..+..++...|+++
T Consensus 10 ~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~ 88 (213)
T 1hh8_A 10 WNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYD 88 (213)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcccHH
Confidence 3455566666666666666666665566666666666666666666666666665532 223455555556666666666
Q ss_pred HHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 036003 344 EGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFE 422 (558)
Q Consensus 344 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 422 (558)
+|...|++..+. .+.+.... +...| +...| ....+..+..++...|++++|.+.|+++++
T Consensus 89 ~A~~~~~~al~~--~~~~~~~~------~~~~~-----------~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 149 (213)
T 1hh8_A 89 LAIKDLKEALIQ--LRGNQLID------YKILG-----------LQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATS 149 (213)
T ss_dssp HHHHHHHHHHHT--TTTCSEEE------CGGGT-----------BCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHh--CCCccHHH------HHHhc-----------cccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 666666665542 11111000 00000 01222 236778888899999999999999999999
Q ss_pred cCCCC
Q 036003 423 LDDSH 427 (558)
Q Consensus 423 ~~~~~ 427 (558)
..|.+
T Consensus 150 ~~p~~ 154 (213)
T 1hh8_A 150 MKSEP 154 (213)
T ss_dssp TCCSG
T ss_pred cCccc
Confidence 98875
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.66 E-value=1.8e-07 Score=74.98 Aligned_cols=100 Identities=13% Similarity=0.093 Sum_probs=89.4
Q ss_pred CCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhH
Q 036003 358 IVPG-IKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVIL 434 (558)
Q Consensus 358 ~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 434 (558)
+.|+ ...+......|.+.|++++|++.|++. ...| +...|..+..++...|++++|+..++++++++|.++.+|..+
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l 87 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIRK 87 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHHH
Confidence 3443 456778899999999999999999987 3334 678999999999999999999999999999999999999999
Q ss_pred HHHHHhcCChHHHHHHHHHHHhC
Q 036003 435 SNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 435 ~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
+.+|...|++++|.+.|++..+.
T Consensus 88 g~~~~~~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 88 AACLVAMREWSKAQRAYEDALQV 110 (126)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHHH
Confidence 99999999999999999998874
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.65 E-value=1.6e-06 Score=87.19 Aligned_cols=356 Identities=10% Similarity=-0.022 Sum_probs=213.3
Q ss_pred C-CHHHHHHHHccCCCCCcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHH
Q 036003 70 S-SMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHC 148 (558)
Q Consensus 70 ~-~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~ 148 (558)
| +++.|+.+|+++.. .+-. |+++.+..+|++.... .|+...|...+.-..+.+ ...+....+|+
T Consensus 8 ~~~i~~aR~vyer~l~-----------~~P~-~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~-~~~~~i~~~fe 72 (493)
T 2uy1_A 8 GVELSSPSAIMEHARR-----------LYMS-KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVS-QKKFKLYEVYE 72 (493)
T ss_dssp ----CCHHHHHHHHHH-----------HHHT-TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC-----CTHHHHH
T ss_pred CcchHHHHHHHHHHHH-----------HCCC-CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhC-chHHHHHHHHH
Confidence 5 36777777776542 2211 7899999999999874 578889988888777662 23466778888
Q ss_pred HHHHh-CCC-ChHHHHHHHHHHHHh----CCChHHHHHHHhccCC-CCcchHHHHHHHHHH-----------------CC
Q 036003 149 FAIKL-GLN-SNLYVCTTLINLYAE----CSDVEAARRIFENISE-PCVVSYNAIITAYAR-----------------SS 204 (558)
Q Consensus 149 ~~~~~-g~~-~~~~~~~~ll~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~-----------------~g 204 (558)
.++.. |.. .+...|...+..+.. .++++.+..+|++... |.. .+..+-..|.. .+
T Consensus 73 ~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~-~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~ 151 (493)
T 2uy1_A 73 FTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMG-SLSELWKDFENFELELNKITGKKIVGDTLP 151 (493)
T ss_dssp HHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCT-THHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhh-hHHHHHHHHHHHHHHhccccHHHHHHHHhH
Confidence 88765 533 366778877776542 4678889999998865 221 11222111111 11
Q ss_pred CccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc--CC-----hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHH
Q 036003 205 RPNEALSLFRELQERNLKPTDVTMLSALSSCALL--GS-----LDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLD 277 (558)
Q Consensus 205 ~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~--~~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 277 (558)
.+..|..+++.+...--..+...|...+.--... +- .+.+..+|+++.... +.+...|-..+..+.+.|+.+
T Consensus 152 ~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~ 230 (493)
T 2uy1_A 152 IFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKE 230 (493)
T ss_dssp HHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHH
Confidence 2233444444433210001223444433332221 11 345677888888754 455778888888888999999
Q ss_pred HHHHHHhccCCC--CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCC---------CCC---CHHHHHHHHHHHHccCChH
Q 036003 278 DAVSVFDNMSGK--DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ---------VSP---DEITFLGLLYACSHTGLVD 343 (558)
Q Consensus 278 ~A~~~~~~~~~~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g---------~~p---~~~~~~~ll~~~~~~g~~~ 343 (558)
+|..+|++.... +...|. .|....+.++. ++.+.+.- ..+ ....|...+....+.++.+
T Consensus 231 ~ar~i~erAi~~P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~ 303 (493)
T 2uy1_A 231 KAKKVVERGIEMSDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLE 303 (493)
T ss_dssp HHHHHHHHHHHHCCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHH
T ss_pred HHHHHHHHHHhCCCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHH
Confidence 999999875432 222222 22222111121 22222210 011 1234555666666778899
Q ss_pred HHHHHHHHchhhcCCCCChhHHHHHHHHHhhcC-CHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036003 344 EGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAG-RLDEAYRFIDEL--PIKSTPILWRTLLSSCSSHNNLGLAKQVIERI 420 (558)
Q Consensus 344 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 420 (558)
.|..+|++. .. . ..+...|...+..-...+ +.+.|..+|+.. ....++..|...+......|+.+.|..+|+++
T Consensus 304 ~AR~i~~~A-~~-~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 304 LFRKLFIEL-GN-E-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHHHHH-TT-S-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHHHHh-hC-C-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999998 32 1 234455543333333333 699999999886 22223556677778778899999999999998
Q ss_pred HccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 421 FELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 421 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
. .+...+...+..-...|+.+.+.++++++.+
T Consensus 381 ~----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 381 E----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp C----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred H----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3 3455677777777788999999998887764
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.64 E-value=1.7e-06 Score=80.90 Aligned_cols=124 Identities=8% Similarity=0.005 Sum_probs=66.4
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCc-----hhHHHHHHHHHHhcCCHHHHHHHHhccCC------C----CHHhHH
Q 036003 231 ALSSCALLGSLDLGKWIHEYIKKYGLDKY-----VKVNTALIDMHAKCGRLDDAVSVFDNMSG------K----DTQAWS 295 (558)
Q Consensus 231 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~----~~~~~~ 295 (558)
+...+...+++++|...++++.+.....+ ..+++.+..+|...|++++|...|+++.+ . ...+|.
T Consensus 121 l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 200 (293)
T 3u3w_A 121 VAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRY 200 (293)
T ss_dssp HHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHH
T ss_pred HHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHH
Confidence 34444444555555555555554321111 12455555555556666555555555431 1 123456
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHccCC-hHHHHHHHHHchh
Q 036003 296 AMIVAYATHGQGHKSILMFEEMMK----AQVSPD-EITFLGLLYACSHTGL-VDEGWNYFYSMRD 354 (558)
Q Consensus 296 ~li~~~~~~~~~~~a~~~~~~m~~----~g~~p~-~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~ 354 (558)
.+...|.+.|++++|+..+++..+ .+..+. ...|..+..++...|+ +++|.+.+++...
T Consensus 201 nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 201 NHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 666666677777777666666553 222222 4566666677777773 4777776666554
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.63 E-value=3e-07 Score=75.50 Aligned_cols=97 Identities=11% Similarity=-0.047 Sum_probs=82.5
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHH
Q 036003 361 GIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIK-STPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLC 438 (558)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 438 (558)
+...+..+...+.+.|++++|...|++. ... .+...|..+..++...|++++|...|+++++.+|.++..+..++.+|
T Consensus 17 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 17 TLEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 3455666777888899999999999887 223 36778888999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhC
Q 036003 439 ARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 439 ~~~g~~~~A~~~~~~m~~~ 457 (558)
...|++++|.+.|++..+.
T Consensus 97 ~~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999988763
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.63 E-value=4.5e-07 Score=71.95 Aligned_cols=115 Identities=17% Similarity=0.187 Sum_probs=81.2
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHH
Q 036003 326 EITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-P-IKSTPILWRTLLSS 403 (558)
Q Consensus 326 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~ 403 (558)
...+..+...+...|++++|.+.++++... .+.+...+..+...+.+.|++++|..+++++ . ...+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALEL--DPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHH
Confidence 345566666667777777777777776653 2334566677777777777777777777766 1 12356677788888
Q ss_pred HHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcC
Q 036003 404 CSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAG 442 (558)
Q Consensus 404 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 442 (558)
+...|++++|...++++++..|.++..+..+..++...|
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 888888888888888888888888777777777665543
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.63 E-value=4.1e-07 Score=73.29 Aligned_cols=116 Identities=9% Similarity=0.001 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHH
Q 036003 326 EITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PI-KSTPILWRTLLSS 403 (558)
Q Consensus 326 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~ 403 (558)
...+..+...+...|++++|...|++..+ ..+.+...+..+...|...|++++|.+.+++. .. ..+...+..+..+
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIK--RNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHT--TCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 45566666667777777777777777664 22335666777777777777777777777765 22 2356777888888
Q ss_pred HHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCC
Q 036003 404 CSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGR 443 (558)
Q Consensus 404 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 443 (558)
+...|++++|.+.|+++++..|.+...+..+..++.+.|+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 8888888888888888888888887788888877776653
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.61 E-value=3.8e-07 Score=73.13 Aligned_cols=116 Identities=9% Similarity=-0.064 Sum_probs=86.2
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHH
Q 036003 327 ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PI-KSTPILWRTLLSSC 404 (558)
Q Consensus 327 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~ 404 (558)
..+..+...+...|++++|...+++.... .+.+...+..+...+...|++++|.+.+++. .. ..+...+..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 45556666666777777777777776653 2335666777777777777888877777765 22 23567788888888
Q ss_pred HhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCCh
Q 036003 405 SSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRW 444 (558)
Q Consensus 405 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 444 (558)
...|++++|...++++++..|.++..+..++.++.+.|++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~ 130 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREA 130 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcC
Confidence 8999999999999999998888888888888888887765
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.59 E-value=1.3e-07 Score=87.90 Aligned_cols=189 Identities=11% Similarity=-0.004 Sum_probs=104.6
Q ss_pred hHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036003 261 KVNTALIDMHAKCGRLDDAVSVFDNMS---GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS 337 (558)
Q Consensus 261 ~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~ 337 (558)
..+..+...+.+.|++++|...|++.. ..+...|..+..+|.+.|++++|+..+++..+.. +-+...+..+..++.
T Consensus 5 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 5 QELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 334445555556666666666665543 2245556666666666666666666666666532 123456666666777
Q ss_pred ccCChHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 036003 338 HTGLVDEGWNYFYSMRDKYGIVPG-IKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQV 416 (558)
Q Consensus 338 ~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 416 (558)
..|++++|...|++..+. .|+ ...+...+....+..+...... ........+......+.. + ..|++++|.+.
T Consensus 84 ~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~~-l-~~~~~~~A~~~ 157 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLTR-L-IAAERERELEE 157 (281)
T ss_dssp HTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHHH-H-HHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHHH-H-HHHHHHHHHHH
Confidence 777777777777666542 111 0011111111111111111111 112222233333333322 2 26888899999
Q ss_pred HHHHHccCCCCcccHHhHHHHHHhc-CChHHHHHHHHHHHh
Q 036003 417 IERIFELDDSHGGDYVILSNLCARA-GRWEDVDYLRKLMKD 456 (558)
Q Consensus 417 ~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~A~~~~~~m~~ 456 (558)
++++++.+|.+......+...+.+. +.+++|.++|++..+
T Consensus 158 ~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 158 CQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp TSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9988888888766666666666666 668889999987765
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.57 E-value=3e-06 Score=79.12 Aligned_cols=161 Identities=11% Similarity=0.003 Sum_probs=113.1
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCC---C------HHhHHHHHHHHHHCCChHHHHHHHHHHHHCCC---CCC--HHH
Q 036003 263 NTALIDMHAKCGRLDDAVSVFDNMSGK---D------TQAWSAMIVAYATHGQGHKSILMFEEMMKAQV---SPD--EIT 328 (558)
Q Consensus 263 ~~~l~~~~~~~g~~~~A~~~~~~~~~~---~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~---~p~--~~~ 328 (558)
+...+..+...|++++|.+.++...+. . ...+..+...+...|++++|+..+++..+... .+. ..+
T Consensus 78 l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 157 (293)
T 2qfc_A 78 FKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYI 157 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHH
Confidence 334566677778888887777654321 1 12234455667778889999999888875321 122 357
Q ss_pred HHHHHHHHHccCChHHHHHHHHHchhhcCCCCC-----hhHHHHHHHHHhhcCCHHHHHHHHHhC-C------CCC-CHH
Q 036003 329 FLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPG-----IKHYGCMVDLLGRAGRLDEAYRFIDEL-P------IKS-TPI 395 (558)
Q Consensus 329 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~~-~------~~~-~~~ 395 (558)
++.+...|...|++++|...|++..+.....|+ ..++..+...|.+.|++++|.+.+++. . ... -..
T Consensus 158 ~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~ 237 (293)
T 2qfc_A 158 ENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQ 237 (293)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHH
Confidence 888888888999999999999888732111222 257888888999999999999988875 1 111 156
Q ss_pred HHHHHHHHHHhcCCHHHH-HHHHHHHHcc
Q 036003 396 LWRTLLSSCSSHNNLGLA-KQVIERIFEL 423 (558)
Q Consensus 396 ~~~~l~~~~~~~g~~~~a-~~~~~~~~~~ 423 (558)
+|..+..+|...|++++| ...+++++..
T Consensus 238 ~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 238 LYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 788899999999999999 7888888753
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.55 E-value=6.2e-07 Score=85.57 Aligned_cols=94 Identities=11% Similarity=-0.015 Sum_probs=81.0
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHH
Q 036003 362 IKHYGCMVDLLGRAGRLDEAYRFIDEL-PIK-STPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCA 439 (558)
Q Consensus 362 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 439 (558)
...|..+..+|.+.|++++|+..+++. ... .+...|..+..+|...|++++|...|+++++++|.+..++..+..++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 457788888888999999999988887 223 367889999999999999999999999999999999999999999999
Q ss_pred hcCChHHH-HHHHHHHH
Q 036003 440 RAGRWEDV-DYLRKLMK 455 (558)
Q Consensus 440 ~~g~~~~A-~~~~~~m~ 455 (558)
+.|++++| ..++++|.
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999998 44666664
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.53 E-value=9.2e-07 Score=80.30 Aligned_cols=134 Identities=11% Similarity=-0.085 Sum_probs=81.0
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCC--hhHHHHHHHHHh
Q 036003 296 AMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPG--IKHYGCMVDLLG 373 (558)
Q Consensus 296 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~~~li~~~~ 373 (558)
.....+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+..... . .|. ...+..+..++.
T Consensus 107 ayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~al~ 182 (282)
T 4f3v_A 107 GFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVAAA 182 (282)
T ss_dssp HHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHHHH
Confidence 34555666677777777776665532 44334444444666777777777777644321 1 111 235566677777
Q ss_pred hcCCHHHHHHHHHhCCCC---CC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhH
Q 036003 374 RAGRLDEAYRFIDELPIK---ST--PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVIL 434 (558)
Q Consensus 374 ~~g~~~~A~~~~~~~~~~---~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 434 (558)
+.|++++|+..|++.... |. .........++.+.|+.++|..+|+++...+|. ...+..|
T Consensus 183 ~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL 247 (282)
T 4f3v_A 183 NLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAAL 247 (282)
T ss_dssp HTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHH
T ss_pred HCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHH
Confidence 777777777777766111 32 235556666777777888888888877777776 4444333
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.52 E-value=5.6e-07 Score=72.00 Aligned_cols=96 Identities=6% Similarity=-0.067 Sum_probs=79.9
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHH
Q 036003 362 IKHYGCMVDLLGRAGRLDEAYRFIDEL-PIK-STPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCA 439 (558)
Q Consensus 362 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 439 (558)
...+..+...+.+.|++++|...|++. ... .+...|..+..++...|++++|+..++++++.+|.++.+|..++.+|.
T Consensus 4 a~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 4 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 345667777888888888888888876 223 367788888889999999999999999999999998889999999999
Q ss_pred hcCChHHHHHHHHHHHhC
Q 036003 440 RAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 440 ~~g~~~~A~~~~~~m~~~ 457 (558)
..|++++|...+++..+.
T Consensus 84 ~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 84 AVKEYASALETLDAARTK 101 (126)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHHHh
Confidence 999999999999888764
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.51 E-value=2.7e-07 Score=79.02 Aligned_cols=118 Identities=7% Similarity=0.058 Sum_probs=76.9
Q ss_pred ccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHH-HHhcCCH--HH
Q 036003 338 HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIK-STPILWRTLLSS-CSSHNNL--GL 412 (558)
Q Consensus 338 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~-~~~~g~~--~~ 412 (558)
..|++++|...++..... .+.+...+..+...|...|++++|...|++. ... .+...+..+..+ +...|++ ++
T Consensus 22 ~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp -----CCCCHHHHHHHHH--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hccCHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 345666666666666542 2334566666677777777777777777665 112 245566666666 6677777 77
Q ss_pred HHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhC
Q 036003 413 AKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 413 a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
|...++++++.+|.++..+..++.+|...|++++|...+++..+.
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 777777777777777777777777777777777777777777664
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.51 E-value=6.8e-07 Score=69.39 Aligned_cols=99 Identities=9% Similarity=0.043 Sum_probs=80.7
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC--CcccHHhHHH
Q 036003 361 GIKHYGCMVDLLGRAGRLDEAYRFIDEL-PI-KSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS--HGGDYVILSN 436 (558)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--~~~~~~~l~~ 436 (558)
+...+..+...+...|++++|...|++. .. ..+...+..+...+...|++++|.+.++++++..|. +...+..++.
T Consensus 5 ~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 5 NPEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKAD 84 (112)
T ss_dssp STTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHH
Confidence 4556667778888888888888888876 22 335677888888888999999999999999998888 8888889999
Q ss_pred HHHhc-CChHHHHHHHHHHHhCCC
Q 036003 437 LCARA-GRWEDVDYLRKLMKDRGV 459 (558)
Q Consensus 437 ~~~~~-g~~~~A~~~~~~m~~~g~ 459 (558)
+|.+. |++++|.+.+++......
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHhCCHHHHHHHHHHHhhccc
Confidence 99999 999999999998876544
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.48 E-value=2.7e-06 Score=71.60 Aligned_cols=97 Identities=9% Similarity=-0.011 Sum_probs=73.5
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHH
Q 036003 361 GIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLC 438 (558)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 438 (558)
+...+..+...+.+.|++++|++.|++. ...| +...|..+..+|...|++++|+..|+++++++|.++..|..++.+|
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 3456666777777777777777777776 2223 5677777888888888888888888888888888888888888888
Q ss_pred HhcCChHHHHHHHHHHHhC
Q 036003 439 ARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 439 ~~~g~~~~A~~~~~~m~~~ 457 (558)
...|++++|...|++..+.
T Consensus 90 ~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHh
Confidence 8888888888888877653
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.47 E-value=2.8e-06 Score=77.09 Aligned_cols=126 Identities=7% Similarity=-0.081 Sum_probs=101.4
Q ss_pred HHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCH----HHHHHHHHHH
Q 036003 329 FLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTP----ILWRTLLSSC 404 (558)
Q Consensus 329 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~----~~~~~l~~~~ 404 (558)
...+...+...|++++|.++|..+... .|+......+...+.+.+++++|+..|+.....|+. ..+..+..++
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~a~~~LG~al 181 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGAAGVAHGVAA 181 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHHHHHHHHHHH
Confidence 334566788999999999999998752 354336667777899999999999999987434433 3677889999
Q ss_pred HhcCCHHHHHHHHHHHHccC--CC-CcccHHhHHHHHHhcCChHHHHHHHHHHHhC
Q 036003 405 SSHNNLGLAKQVIERIFELD--DS-HGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 405 ~~~g~~~~a~~~~~~~~~~~--~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
...|++++|+..|+++.... |. .+.....++.++.+.|+.++|...|+++...
T Consensus 182 ~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 182 ANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 99999999999999998533 33 3446788999999999999999999999874
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.4e-06 Score=76.22 Aligned_cols=24 Identities=8% Similarity=-0.068 Sum_probs=11.0
Q ss_pred HHHHHHHHhccCChHHHHHHHHHH
Q 036003 228 MLSALSSCALLGSLDLGKWIHEYI 251 (558)
Q Consensus 228 ~~~ll~~~~~~~~~~~a~~~~~~~ 251 (558)
+..+...+...|++++|...+++.
T Consensus 69 ~~~l~~~~~~~g~~~~A~~~~~~a 92 (203)
T 3gw4_A 69 LHQVGMVERMAGNWDAARRCFLEE 92 (203)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHH
Confidence 333444444444555444444443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.46 E-value=1.5e-06 Score=75.93 Aligned_cols=132 Identities=14% Similarity=0.061 Sum_probs=61.6
Q ss_pred HHhHHHHHHHHHHCCChHHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCC-C---
Q 036003 291 TQAWSAMIVAYATHGQGHKSILMFEEMMK----AQVSP-DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVP-G--- 361 (558)
Q Consensus 291 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~----~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~-~--- 361 (558)
..++..+...+...|++++|...+++..+ .+..| ....+..+...+...|++++|...+++......-.+ +
T Consensus 26 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 105 (203)
T 3gw4_A 26 SGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNWDAARRCFLEERELLASLPEDPLA 105 (203)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCccHHH
Confidence 34455555555555555555555555443 11111 123444555555556666666655555443211111 1
Q ss_pred -hhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCH----HHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 036003 362 -IKHYGCMVDLLGRAGRLDEAYRFIDEL----PIKSTP----ILWRTLLSSCSSHNNLGLAKQVIERIFE 422 (558)
Q Consensus 362 -~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 422 (558)
...+..+...+...|++++|...+++. ...++. .++..+...+...|++++|.+.++++++
T Consensus 106 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 106 ASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKNLLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHH
Confidence 223444455555555555555555443 001111 2234455555555555555555555544
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.45 E-value=6.5e-07 Score=71.06 Aligned_cols=94 Identities=13% Similarity=-0.042 Sum_probs=82.3
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhc
Q 036003 364 HYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARA 441 (558)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 441 (558)
.+..+...+.+.|++++|...|++. ...| +...|..+..++...|++++|+..|+++++++|.++.++..++.+|...
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 4556777888999999999999887 3334 6788889999999999999999999999999999999999999999999
Q ss_pred CChHHHHHHHHHHHhC
Q 036003 442 GRWEDVDYLRKLMKDR 457 (558)
Q Consensus 442 g~~~~A~~~~~~m~~~ 457 (558)
|++++|...+++..+.
T Consensus 99 g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 99 HNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHC-
T ss_pred CCHHHHHHHHHHHHHh
Confidence 9999999999988764
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.44 E-value=8.9e-07 Score=73.16 Aligned_cols=102 Identities=11% Similarity=-0.037 Sum_probs=80.7
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 036003 327 ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSC 404 (558)
Q Consensus 327 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~ 404 (558)
..+..+...+...|++++|...|+.+... -+.+...|..+..+|...|++++|++.|++. ...| ++..+..+..++
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVL--DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHc--CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHH
Confidence 45666677778888888888888888753 3446777888888888888888888888886 2233 567788889999
Q ss_pred HhcCCHHHHHHHHHHHHccCCCCccc
Q 036003 405 SSHNNLGLAKQVIERIFELDDSHGGD 430 (558)
Q Consensus 405 ~~~g~~~~a~~~~~~~~~~~~~~~~~ 430 (558)
...|++++|...|+++++..|.++..
T Consensus 100 ~~~g~~~~A~~~~~~al~~~p~~~~~ 125 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQELIANXPEF 125 (148)
T ss_dssp HHTTCHHHHHHHHHHHHHHHTTCGGG
T ss_pred HHcCCHHHHHHHHHHHHHHCcCCCcc
Confidence 99999999999999999998877654
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.44 E-value=1.7e-06 Score=70.11 Aligned_cols=98 Identities=10% Similarity=-0.027 Sum_probs=79.6
Q ss_pred CChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHH
Q 036003 360 PGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PI-KSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNL 437 (558)
Q Consensus 360 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 437 (558)
.+...+..+...+...|++++|...|++. .. +.+...|..+..++...|++++|...++++++.+|.++..+..++.+
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 86 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 86 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHH
Confidence 35667777788888888888888888776 22 23567888888888888999999999999988888888888889999
Q ss_pred HHhcCChHHHHHHHHHHHhC
Q 036003 438 CARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 438 ~~~~g~~~~A~~~~~~m~~~ 457 (558)
|...|++++|...|++..+.
T Consensus 87 ~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHH
Confidence 99999999999888887753
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.44 E-value=1.4e-06 Score=75.97 Aligned_cols=170 Identities=10% Similarity=-0.025 Sum_probs=102.0
Q ss_pred HHHHhcCCHHHHHHHHhccCCC---CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHH
Q 036003 268 DMHAKCGRLDDAVSVFDNMSGK---DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDE 344 (558)
Q Consensus 268 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 344 (558)
......|+++++.+.++.-.+. ....+..+...+...|++++|+..|++..+.. |+...+... ....
T Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~--------~~~~ 81 (198)
T 2fbn_A 12 SGRENLYFQGAKKSIYDYTDEEKVQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHTEEWDDQ--------ILLD 81 (198)
T ss_dssp ----------CCCSGGGCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTCTTCCCH--------HHHH
T ss_pred hhhhhhhhccccCchhhCCHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH--hcccccchh--------hHHH
Confidence 3344456666666666543322 34456667777777788888888777777632 221100000 0000
Q ss_pred HHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 036003 345 GWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PI-KSTPILWRTLLSSCSSHNNLGLAKQVIERIFE 422 (558)
Q Consensus 345 a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 422 (558)
.... .....+..+..+|.+.|++++|+..+++. .. ..+...+..+..++...|++++|...|+++++
T Consensus 82 ---~~~~--------~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~ 150 (198)
T 2fbn_A 82 ---KKKN--------IEISCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAAS 150 (198)
T ss_dssp ---HHHH--------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ---HHHH--------HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 0000 01356777788888888888888888876 22 33677888899999999999999999999999
Q ss_pred cCCCCcccHHhHHHHHHhcCChHHHH-HHHHHHHhCC
Q 036003 423 LDDSHGGDYVILSNLCARAGRWEDVD-YLRKLMKDRG 458 (558)
Q Consensus 423 ~~~~~~~~~~~l~~~~~~~g~~~~A~-~~~~~m~~~g 458 (558)
..|.+..++..+..++...++.+++. ..+..|...|
T Consensus 151 ~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 151 LNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HSTTCHHHHHHHHHHHHHHHHHHC-------------
T ss_pred HCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999998888888777 5566554443
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.43 E-value=0.00011 Score=68.89 Aligned_cols=173 Identities=11% Similarity=0.045 Sum_probs=113.2
Q ss_pred HHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhc-C-CH
Q 036003 200 YARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLG-SLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKC-G-RL 276 (558)
Q Consensus 200 ~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~ 276 (558)
..+.+..++|+++++++...+ +-+...++.--.++...| .++++..+++.+.... +-+..+|+.-..++.+. + ++
T Consensus 64 ~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~ 141 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDP 141 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCC
T ss_pred HHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCCh
Confidence 334455567888888888753 234445666656666667 5888888888888765 44566676666666665 6 77
Q ss_pred HHHHHHHhccCCC---CHHhHHHHHHHHHHCCChH--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC----
Q 036003 277 DDAVSVFDNMSGK---DTQAWSAMIVAYATHGQGH--------KSILMFEEMMKAQVSPDEITFLGLLYACSHTGL---- 341 (558)
Q Consensus 277 ~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~--------~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~---- 341 (558)
++++++++.+.+. |..+|+.-.-.+.+.|.++ ++++.++++.+.... |...|+.....+.+.+.
T Consensus 142 ~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 142 VSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccc
Confidence 8888888887754 5566666555555555554 788888888875433 66677766666666665
Q ss_pred ---hHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCC
Q 036003 342 ---VDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGR 377 (558)
Q Consensus 342 ---~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~ 377 (558)
++++++.+.+... ..+-|...|+-+-..+.+.|+
T Consensus 221 ~~~~~eELe~~~~aI~--~~P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 221 SRSLQDELIYILKSIH--LIPHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhcCC
Confidence 5677777777665 234456666666666665554
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.42 E-value=3.3e-06 Score=66.08 Aligned_cols=107 Identities=12% Similarity=0.000 Sum_probs=58.3
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHH
Q 036003 328 TFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIK-STPILWRTLLSSCS 405 (558)
Q Consensus 328 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~ 405 (558)
.+..+...+...|++++|...|++.... .+.+...+..+...+...|++++|...+++. ... .+...+..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 3444444555555555555555555442 1224445555555555556666665555554 112 24555666666666
Q ss_pred hcCCHHHHHHHHHHHHccCCCCcccHHhHHH
Q 036003 406 SHNNLGLAKQVIERIFELDDSHGGDYVILSN 436 (558)
Q Consensus 406 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 436 (558)
..|++++|.+.++++++.+|.++..+..+..
T Consensus 84 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 114 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKHEANNPQLKEGLQN 114 (118)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 6666666666666666666665555444433
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.40 E-value=2.1e-06 Score=68.95 Aligned_cols=99 Identities=10% Similarity=-0.016 Sum_probs=89.3
Q ss_pred CCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHH
Q 036003 359 VPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSN 436 (558)
Q Consensus 359 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~ 436 (558)
+.+...+..+...+.+.|++++|.+.|++. ...| +...+..+...+...|++++|.+.++++++..|.++..+..++.
T Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~ 92 (133)
T 2lni_A 13 PDLALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAA 92 (133)
T ss_dssp SCHHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHH
Confidence 345677888999999999999999999987 4444 67889999999999999999999999999999999999999999
Q ss_pred HHHhcCChHHHHHHHHHHHhC
Q 036003 437 LCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 437 ~~~~~g~~~~A~~~~~~m~~~ 457 (558)
+|.+.|++++|.+.+++..+.
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~ 113 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDL 113 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHh
Confidence 999999999999999998764
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.39 E-value=2.5e-06 Score=67.53 Aligned_cols=96 Identities=14% Similarity=0.195 Sum_probs=86.8
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHH
Q 036003 362 IKHYGCMVDLLGRAGRLDEAYRFIDEL-P-IKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCA 439 (558)
Q Consensus 362 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 439 (558)
...+..+...+...|++++|.++++++ . .+.+..++..+...+...|++++|...++++++..|.++.++..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 567888899999999999999999987 2 23467889999999999999999999999999999999999999999999
Q ss_pred hcCChHHHHHHHHHHHhC
Q 036003 440 RAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 440 ~~g~~~~A~~~~~~m~~~ 457 (558)
..|++++|...++++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 999999999999998764
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.39 E-value=1.5e-06 Score=69.62 Aligned_cols=94 Identities=6% Similarity=-0.033 Sum_probs=75.9
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcc-------cHHh
Q 036003 363 KHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGG-------DYVI 433 (558)
Q Consensus 363 ~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-------~~~~ 433 (558)
..+..+...+.+.|++++|++.|++. ...| +...|..+..+|...|++++|++.++++++++|.+.. +|..
T Consensus 9 ~a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 9 IAEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45667788888888888888888876 3334 5678888899999999999999999999988876543 5667
Q ss_pred HHHHHHhcCChHHHHHHHHHHHh
Q 036003 434 LSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 434 l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
++.+|...|++++|.+.|++...
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh
Confidence 77888888999999999988765
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.38 E-value=6e-06 Score=69.29 Aligned_cols=128 Identities=11% Similarity=-0.030 Sum_probs=89.0
Q ss_pred HhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHH
Q 036003 292 QAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDL 371 (558)
Q Consensus 292 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 371 (558)
..|..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...+++.... .+.+...+..+...
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~ 90 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIEL--DKKYIKGYYRRAAS 90 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CcccHHHHHHHHHH
Confidence 346667777777788888888888777642 225667777777788888888888888887763 23456677778888
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHHHH--HHHHHHHHhcCCHHHHHHHHHHHHc
Q 036003 372 LGRAGRLDEAYRFIDEL-PIKS-TPILW--RTLLSSCSSHNNLGLAKQVIERIFE 422 (558)
Q Consensus 372 ~~~~g~~~~A~~~~~~~-~~~~-~~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~ 422 (558)
+...|++++|.+.|++. ...| +...+ ...+..+...|++++|...+++...
T Consensus 91 ~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 91 NMALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 88888888888888776 2222 34444 3333446677888888888877654
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.38 E-value=2.5e-06 Score=66.79 Aligned_cols=98 Identities=11% Similarity=0.096 Sum_probs=87.4
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHH
Q 036003 361 GIKHYGCMVDLLGRAGRLDEAYRFIDEL-PI-KSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLC 438 (558)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 438 (558)
....+..+...+...|++++|...|++. .. +.+...+..+...+...|++++|...++++++..|.++..+..++.+|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 3 QVNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 3456778889999999999999999987 22 346788899999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhCC
Q 036003 439 ARAGRWEDVDYLRKLMKDRG 458 (558)
Q Consensus 439 ~~~g~~~~A~~~~~~m~~~g 458 (558)
...|++++|.+.+++..+.+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhhHHHHHHHHHHHHHcC
Confidence 99999999999999987643
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.37 E-value=2.4e-06 Score=72.98 Aligned_cols=126 Identities=10% Similarity=0.090 Sum_probs=94.8
Q ss_pred HHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHH-HhhcCCH--
Q 036003 302 ATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDL-LGRAGRL-- 378 (558)
Q Consensus 302 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~-~~~~g~~-- 378 (558)
...|++++|+..+++..+.. +.+...+..+...+...|++++|...|++..+. .+.+...+..+..+ +...|++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~la~~l~~~~~~~~~ 97 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL--RGENAELYAALATVLYYQASQHMT 97 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCSCHHHHHHHHHHHHHHTTTCCC
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhcCCcch
Confidence 34577788888888877643 235677888888888889999999988888763 23456677778877 7788888
Q ss_pred HHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCccc
Q 036003 379 DEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGD 430 (558)
Q Consensus 379 ~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 430 (558)
++|...|++. ...| +...+..+...+...|++++|...|+++++..|.+...
T Consensus 98 ~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 151 (177)
T 2e2e_A 98 AQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPRINR 151 (177)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTSCH
T ss_pred HHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCCccH
Confidence 9999988887 2233 56788888999999999999999999999999887543
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.37 E-value=1.7e-06 Score=71.55 Aligned_cols=98 Identities=8% Similarity=-0.009 Sum_probs=60.7
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHH
Q 036003 328 TFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCS 405 (558)
Q Consensus 328 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~ 405 (558)
.+..+...+.+.|++++|...|+++... -+.+...|..+..+|.+.|++++|+..|++. ...| ++..|..+..+|.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~--~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIY--DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 4445555556666666666666666542 2334556666666666666666666666665 2223 4556667777777
Q ss_pred hcCCHHHHHHHHHHHHccCCCC
Q 036003 406 SHNNLGLAKQVIERIFELDDSH 427 (558)
Q Consensus 406 ~~g~~~~a~~~~~~~~~~~~~~ 427 (558)
..|++++|...|++++++.|++
T Consensus 116 ~lg~~~eA~~~~~~al~l~~~~ 137 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQHSNDE 137 (151)
T ss_dssp HTTCHHHHHHHHHHHHHHCCCH
T ss_pred HcCCHHHHHHHHHHHHHhCCCH
Confidence 7777777777777777777654
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.36 E-value=4e-06 Score=68.80 Aligned_cols=96 Identities=13% Similarity=0.067 Sum_probs=63.9
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHH
Q 036003 361 GIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKST----PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILS 435 (558)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 435 (558)
+...+..+...+...|++++|.+.|++. ...|+ ...|..+..++...|++++|...++++++..|.++..+..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 3455566666666666666666666665 34454 455666666677777777777777777777776666677777
Q ss_pred HHHHhcCChHHHHHHHHHHHh
Q 036003 436 NLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 436 ~~~~~~g~~~~A~~~~~~m~~ 456 (558)
.+|...|++++|...+++..+
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~ 127 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVS 127 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 777777777777777776655
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.35 E-value=4.6e-06 Score=70.17 Aligned_cols=108 Identities=10% Similarity=-0.001 Sum_probs=83.7
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHH
Q 036003 326 EITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSS 403 (558)
Q Consensus 326 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~ 403 (558)
...+..+...+...|++++|...|++..+. .+.+...|..+..+|.+.|++++|+..|++. ...| +...|..+..+
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~ 88 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI--APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLA 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 355666677777788888888888877753 2335677788888888888888888888876 2233 57888999999
Q ss_pred HHhcCCHHHHHHHHHHHHccCCCCcccHHhHH
Q 036003 404 CSSHNNLGLAKQVIERIFELDDSHGGDYVILS 435 (558)
Q Consensus 404 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 435 (558)
+...|++++|...|+++++++|.+...+....
T Consensus 89 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~ 120 (164)
T 3sz7_A 89 RFDMADYKGAKEAYEKGIEAEGNGGSDAMKRG 120 (164)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhCCCchHHHHHHH
Confidence 99999999999999999999999887654433
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.35 E-value=2.6e-06 Score=69.80 Aligned_cols=104 Identities=10% Similarity=-0.035 Sum_probs=77.6
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHH
Q 036003 327 ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIK-STPILWRTLLSSC 404 (558)
Q Consensus 327 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~ 404 (558)
..+..+...+.+.|++++|...|+.+... -+.+...|..+..+|.+.|++++|...|++. ... .++..+..+..++
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 96 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCML--DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECH 96 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHH
Confidence 34555566677778888888888877753 2345677777888888888888888888876 222 3556778888889
Q ss_pred HhcCCHHHHHHHHHHHHccCCCCcccHH
Q 036003 405 SSHNNLGLAKQVIERIFELDDSHGGDYV 432 (558)
Q Consensus 405 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 432 (558)
...|++++|...|+++++..|.++....
T Consensus 97 ~~~g~~~~A~~~~~~al~~~p~~~~~~~ 124 (142)
T 2xcb_A 97 LQLGDLDGAESGFYSARALAAAQPAHEA 124 (142)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCcchHH
Confidence 9999999999999999998887765543
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.35 E-value=0.00043 Score=64.96 Aligned_cols=174 Identities=10% Similarity=-0.048 Sum_probs=119.1
Q ss_pred HHHhcCCCchHHHHHHHHhHHCCCCCCc-ccHHHHHHHHHhcCcc-cHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhC
Q 036003 95 RGYSRSKTPIRAIFLFVELLNSGLLPDD-YSFPSLLKACACVGAE-ALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAEC 172 (558)
Q Consensus 95 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~~~~~ll~~~~~~~~~-~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~ 172 (558)
....+.+..++|+++++++... .|+. ..|+.--..+... + .+++++..++.++... +-+..+|+.-..++.+.
T Consensus 62 ~~~~~~e~se~AL~lt~~~L~~--nP~~ytaWn~R~~iL~~l--~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l 136 (349)
T 3q7a_A 62 AIAAKEEKSERALELTEIIVRM--NPAHYTVWQYRFSLLTSL--NKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRI 136 (349)
T ss_dssp HHHHTTCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHT--TCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHH
T ss_pred HHHHhCCCCHHHHHHHHHHHHh--CchhHHHHHHHHHHHHHh--hhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHh
Confidence 3334455667899999999885 4444 4466665666666 6 6999999999999865 55777888887777776
Q ss_pred -C-ChHHHHHHHhccCCC---CcchHHHHHHHHHHCCCcc--------HHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 036003 173 -S-DVEAARRIFENISEP---CVVSYNAIITAYARSSRPN--------EALSLFRELQERNLKPTDVTMLSALSSCALLG 239 (558)
Q Consensus 173 -g-~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~--------~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 239 (558)
+ +.++++++++++.+. |-.+|+--...+.+.|.++ ++++.++++.+.. +-|...|+.....+.+.+
T Consensus 137 ~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~ 215 (349)
T 3q7a_A 137 SPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRP 215 (349)
T ss_dssp CCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTST
T ss_pred cCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcc
Confidence 6 889999999998874 4455655555555555565 8888888888764 346667777766666666
Q ss_pred C-------hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 036003 240 S-------LDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGR 275 (558)
Q Consensus 240 ~-------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 275 (558)
. ++++.+.+.++.... +-|...|+-+-..+.+.|+
T Consensus 216 ~~~~~~~~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 216 GAETSSRSLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp TCCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred ccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCC
Confidence 5 566777777766654 4455566555555555443
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.35 E-value=3.8e-06 Score=67.06 Aligned_cols=109 Identities=7% Similarity=-0.105 Sum_probs=72.9
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 036003 327 ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSC 404 (558)
Q Consensus 327 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~ 404 (558)
..+..+...+.+.|++++|...|++..+. .+.+...|..+..+|.+.|++++|+..+++. ...| +...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 34455555666667777777777666652 2334566777777777777777777777765 2233 466777788888
Q ss_pred HhcCCHHHHHHHHHHHHccC------CCCcccHHhHHHH
Q 036003 405 SSHNNLGLAKQVIERIFELD------DSHGGDYVILSNL 437 (558)
Q Consensus 405 ~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~l~~~ 437 (558)
...|++++|...|+++++.+ |.+......+..+
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~ 121 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 121 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHH
Confidence 88888888888888888887 6655555544443
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.35 E-value=1.3e-06 Score=80.94 Aligned_cols=47 Identities=0% Similarity=-0.123 Sum_probs=26.9
Q ss_pred cCChHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHhhc-CCHHHHHHHHHhC
Q 036003 339 TGLVDEGWNYFYSMRDKYGIVPG-IKHYGCMVDLLGRA-GRLDEAYRFIDEL 388 (558)
Q Consensus 339 ~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~-g~~~~A~~~~~~~ 388 (558)
.|++++|.+.++...+ ..|+ ......+...+.+. +.+++|.++|.+.
T Consensus 148 ~~~~~~A~~~~~~al~---~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a 196 (281)
T 2c2l_A 148 AAERERELEECQRNHE---GHEDDGHIRAQQACIEAKHDKYMADMDELFSQV 196 (281)
T ss_dssp HHHHHHHHTTTSGGGT---TTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhhhc---cccchhhhhhHHHHHHHHHHHHHHHHHHHHHhh
Confidence 4677777777766653 2333 33333344444444 5677777777766
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.33 E-value=8.3e-06 Score=66.86 Aligned_cols=111 Identities=8% Similarity=-0.121 Sum_probs=74.7
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHH
Q 036003 325 DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPG----IKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWR 398 (558)
Q Consensus 325 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~ 398 (558)
+...+..+...+...|++++|...|++..+ ..|+ ...+..+...|...|++++|...+++. ...| +...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHH
Confidence 345555566666666666666666666653 2343 456666677777777777777777665 2223 566777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHH
Q 036003 399 TLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLC 438 (558)
Q Consensus 399 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 438 (558)
.+..++...|++++|...|+++++..|.+...+..+..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~ 143 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNIS 143 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHH
Confidence 7888888888888888888888888887766665555443
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.27 E-value=5.5e-06 Score=66.14 Aligned_cols=97 Identities=11% Similarity=0.052 Sum_probs=87.3
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHH
Q 036003 361 GIKHYGCMVDLLGRAGRLDEAYRFIDEL-PI-KSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLC 438 (558)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~ 438 (558)
+...+..+...+...|++++|...|++. .. ..+...+..+...+...|++++|.+.++++++..|.++..+..++.+|
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 4567788889999999999999999987 22 346788999999999999999999999999999999999999999999
Q ss_pred HhcCChHHHHHHHHHHHhC
Q 036003 439 ARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 439 ~~~g~~~~A~~~~~~m~~~ 457 (558)
...|++++|...+++..+.
T Consensus 91 ~~~~~~~~A~~~~~~~~~~ 109 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALEL 109 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhc
Confidence 9999999999999998774
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.27 E-value=7.9e-06 Score=65.23 Aligned_cols=93 Identities=9% Similarity=0.075 Sum_probs=55.8
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC-------cccHHhH
Q 036003 364 HYGCMVDLLGRAGRLDEAYRFIDEL-P-IKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH-------GGDYVIL 434 (558)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-------~~~~~~l 434 (558)
.+..+...+...|++++|...|++. . .+.+...+..+...+...|++++|...++++++..|.+ ..++..+
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 4445555556666666666666554 1 12245556666666666666666666666666665544 4556666
Q ss_pred HHHHHhcCChHHHHHHHHHHHh
Q 036003 435 SNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 435 ~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
+.+|...|++++|.+.+++..+
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~ 107 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLA 107 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHH
Confidence 6666666666666666666655
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.26 E-value=6.3e-06 Score=66.72 Aligned_cols=100 Identities=7% Similarity=-0.136 Sum_probs=75.2
Q ss_pred CHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHH
Q 036003 325 DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIK-STPILWRTLLS 402 (558)
Q Consensus 325 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~ 402 (558)
+...+..+...+...|++++|...|+..... .+.+...+..+..++...|++++|...+++. ... .+...|..+..
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~ 85 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQ 85 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh--CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHH
Confidence 4566777777777777788887777777653 2335667777778888888888888887776 222 35678888888
Q ss_pred HHHhcCCHHHHHHHHHHHHccCCC
Q 036003 403 SCSSHNNLGLAKQVIERIFELDDS 426 (558)
Q Consensus 403 ~~~~~g~~~~a~~~~~~~~~~~~~ 426 (558)
++...|++++|...|+++++..|.
T Consensus 86 ~~~~~~~~~~A~~~~~~a~~~~p~ 109 (137)
T 3q49_B 86 CQLEMESYDEAIANLQRAYSLAKE 109 (137)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHChh
Confidence 888899999999999999888776
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.25 E-value=0.00027 Score=66.05 Aligned_cols=192 Identities=8% Similarity=-0.015 Sum_probs=104.2
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC--CHHHHHHHHhccCC---CCHHhHHHHHHHHHHCCC-hHHHHHHH
Q 036003 241 LDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCG--RLDDAVSVFDNMSG---KDTQAWSAMIVAYATHGQ-GHKSILMF 314 (558)
Q Consensus 241 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~-~~~a~~~~ 314 (558)
++++..+++.+.... +-+..+|+.-..++.+.| .+++++++++.+.+ +|..+|+.-.-.+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 455556666665543 334555555555555555 36667776666652 355666666666666666 46777777
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHcc--------------CChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhc-----
Q 036003 315 EEMMKAQVSPDEITFLGLLYACSHT--------------GLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRA----- 375 (558)
Q Consensus 315 ~~m~~~g~~p~~~~~~~ll~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~----- 375 (558)
.++++..+. |...|+.....+.+. +.++++++.+..... -.+-|...|+-+-..+.+.
T Consensus 169 ~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~--~~P~d~SaW~Y~r~ll~~~~~~~~ 245 (331)
T 3dss_A 169 DSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFF--TDPNDQSAWFYHRWLLGAGSGRCE 245 (331)
T ss_dssp HHHHHHCSC-CHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHH--HSTTCHHHHHHHHHHHHSSSCGGG
T ss_pred HHHHHHCCC-CHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHhccCccc
Confidence 777765322 445555444443333 335666666666664 2333455555444444433
Q ss_pred ------CCHHHHHHHHHhC-CCCCCHHHHHH--HH---HHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHH
Q 036003 376 ------GRLDEAYRFIDEL-PIKSTPILWRT--LL---SSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNL 437 (558)
Q Consensus 376 ------g~~~~A~~~~~~~-~~~~~~~~~~~--l~---~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 437 (558)
+.++++++.++++ ...||. .|.. ++ .+....|..++....+.++.+++|....-|..+...
T Consensus 246 ~~~~~~~~l~~el~~~~elle~~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~Dp~r~~~y~d~~~~ 318 (331)
T 3dss_A 246 LSVEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDLRSK 318 (331)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHHHHhhCccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHHhCcchhhHHHHHHHH
Confidence 3456666666665 333432 2221 11 112234566677777777777777665555544433
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=98.24 E-value=3.9e-06 Score=68.71 Aligned_cols=91 Identities=13% Similarity=0.020 Sum_probs=70.5
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-CCCC--------C-----HHHHHHHHHHHHhcCCHHHHHHHHHHHHcc-------C
Q 036003 366 GCMVDLLGRAGRLDEAYRFIDEL-PIKS--------T-----PILWRTLLSSCSSHNNLGLAKQVIERIFEL-------D 424 (558)
Q Consensus 366 ~~li~~~~~~g~~~~A~~~~~~~-~~~~--------~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~ 424 (558)
......+.+.|++++|+..|++. ...| + ...|..+..++...|++++|+..+++++++ +
T Consensus 15 ~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~ 94 (159)
T 2hr2_A 15 LSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELN 94 (159)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCC
Confidence 33444455555666665555554 1111 1 238888999999999999999999999999 9
Q ss_pred CCCcccH----HhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 425 DSHGGDY----VILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 425 ~~~~~~~----~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
|++...| ...+.++...|++++|...|++..+
T Consensus 95 pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 95 QDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp STHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 9998899 9999999999999999999998875
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.22 E-value=8.4e-06 Score=68.37 Aligned_cols=64 Identities=9% Similarity=0.089 Sum_probs=55.7
Q ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhC
Q 036003 394 PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 394 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
...|..+..+|...|++++|+..++++++++|.++.+|..++.+|...|++++|...|++....
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 3577788888889999999999999999999998889999999999999999999998888764
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.22 E-value=1.3e-05 Score=80.24 Aligned_cols=84 Identities=6% Similarity=-0.004 Sum_probs=37.3
Q ss_pred HHhcCCHHHHHHHHhccCC---CCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHH
Q 036003 270 HAKCGRLDDAVSVFDNMSG---KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGW 346 (558)
Q Consensus 270 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 346 (558)
+.+.|++++|.+.|++..+ .+..+|..+..+|.+.|++++|+..+++..+.. +-+...+..+..++...|++++|.
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA~ 94 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAAL 94 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHH
Confidence 3444555555555444321 134444444444444444444444444444421 112334444444444444444444
Q ss_pred HHHHHchh
Q 036003 347 NYFYSMRD 354 (558)
Q Consensus 347 ~~~~~~~~ 354 (558)
+.|++..+
T Consensus 95 ~~~~~al~ 102 (477)
T 1wao_1 95 RDYETVVK 102 (477)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 44444443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.21 E-value=1.6e-05 Score=75.77 Aligned_cols=131 Identities=8% Similarity=-0.007 Sum_probs=99.4
Q ss_pred CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCC--------------HHHHHHHHHHHHccCChHHHHHHHHHchhh
Q 036003 290 DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPD--------------EITFLGLLYACSHTGLVDEGWNYFYSMRDK 355 (558)
Q Consensus 290 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--------------~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 355 (558)
+...|..+...|.+.|++++|+..|++..+...... ...|..+..++.+.|++++|...+++..+.
T Consensus 146 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 225 (336)
T 1p5q_A 146 QSTIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALEL 225 (336)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 345677777778888888888888888777432211 477888888888999999999999988863
Q ss_pred cCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHH-HHHHHHHHc
Q 036003 356 YGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLA-KQVIERIFE 422 (558)
Q Consensus 356 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~ 422 (558)
.+.+...|..+..+|...|++++|...|++. ...| +...+..+..++...|+.++| ...+++|++
T Consensus 226 --~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 226 --DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred --CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3446778888889999999999999999887 3334 567888888888888888888 456666653
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.20 E-value=1.3e-05 Score=79.32 Aligned_cols=161 Identities=9% Similarity=-0.119 Sum_probs=81.8
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHCC-CCCCHH----HHHHHHHHHHccCChHHHHHHHHHchhhc---CCCC-ChhH
Q 036003 294 WSAMIVAYATHGQGHKSILMFEEMMKAQ-VSPDEI----TFLGLLYACSHTGLVDEGWNYFYSMRDKY---GIVP-GIKH 364 (558)
Q Consensus 294 ~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~----~~~~ll~~~~~~g~~~~a~~~~~~~~~~~---~~~~-~~~~ 364 (558)
+..++..|...|++++|.+.+.++...- ..++.. ..+.+-..+...|+++.|..++....... +..+ -..+
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 137 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSL 137 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 3445555555555555555555443310 011111 11122222334456666666655544311 1111 1345
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-----C--CCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCC---CC----cc
Q 036003 365 YGCMVDLLGRAGRLDEAYRFIDEL-----P--IKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDD---SH----GG 429 (558)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~~~~~~-----~--~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~---~~----~~ 429 (558)
+..|...|...|++++|..++++. . .++ ...++..++..|...|++++|..++++++...+ .. ..
T Consensus 138 ~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~ 217 (434)
T 4b4t_Q 138 SIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAE 217 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHH
T ss_pred HHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHH
Confidence 556666666777777776666654 1 111 134566666677777777777777776655431 11 12
Q ss_pred cHHhHHHHHHhcCChHHHHHHHHHH
Q 036003 430 DYVILSNLCARAGRWEDVDYLRKLM 454 (558)
Q Consensus 430 ~~~~l~~~~~~~g~~~~A~~~~~~m 454 (558)
.+..++..+...|++++|...|.+.
T Consensus 218 ~~~~~g~~~~~~~~y~~A~~~~~~a 242 (434)
T 4b4t_Q 218 LDLMSGILHCEDKDYKTAFSYFFES 242 (434)
T ss_dssp HHHHHHHHTTSSSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3455556666667777776665554
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.20 E-value=4.1e-06 Score=67.05 Aligned_cols=91 Identities=13% Similarity=0.083 Sum_probs=61.9
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCCCC-H---HHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC---cccHHhHHHHH
Q 036003 367 CMVDLLGRAGRLDEAYRFIDEL-PIKST-P---ILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH---GGDYVILSNLC 438 (558)
Q Consensus 367 ~li~~~~~~g~~~~A~~~~~~~-~~~~~-~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~---~~~~~~l~~~~ 438 (558)
.+...+.+.|++++|.+.|++. ...|+ . ..+..+..++...|++++|...++++++..|.+ +.++..++.+|
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 3455566677777777777665 11222 2 456666777777777777777777777777776 55577777777
Q ss_pred HhcCChHHHHHHHHHHHhC
Q 036003 439 ARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 439 ~~~g~~~~A~~~~~~m~~~ 457 (558)
...|++++|...|+++.+.
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 7777777777777777653
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=98.20 E-value=9.7e-06 Score=62.63 Aligned_cols=99 Identities=12% Similarity=-0.041 Sum_probs=66.5
Q ss_pred HHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC---CHHHHHHHHHH
Q 036003 328 TFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS---TPILWRTLLSS 403 (558)
Q Consensus 328 ~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~---~~~~~~~l~~~ 403 (558)
.+..+...+...|++++|...+++..+. .+.+...+..+...+...|++++|.+.|++. ...| +...+..+..+
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 4445555666667777777776666652 2334556666777777777777777777765 2223 46677777788
Q ss_pred HHhc-CCHHHHHHHHHHHHccCCCCc
Q 036003 404 CSSH-NNLGLAKQVIERIFELDDSHG 428 (558)
Q Consensus 404 ~~~~-g~~~~a~~~~~~~~~~~~~~~ 428 (558)
+... |++++|.+.++++++..|.++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 8888 888888888888887777653
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.19 E-value=7.3e-05 Score=73.90 Aligned_cols=191 Identities=11% Similarity=0.051 Sum_probs=89.6
Q ss_pred HHHHHHCCCccHHHHHHHHHHHCCCCCCH----------------HHHHHHHHHHhccCChHHHHHHHHHHHHhCCC-Cc
Q 036003 197 ITAYARSSRPNEALSLFRELQERNLKPTD----------------VTMLSALSSCALLGSLDLGKWIHEYIKKYGLD-KY 259 (558)
Q Consensus 197 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~----------------~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~ 259 (558)
...+.+.|++++|++.|....+....... ..+..+...|...|++++|..++..+.+.-.. .+
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 34566778888888888877765322110 12455566666666666666666655432101 11
Q ss_pred h----hHHHHHHHHHHhcCCHHHHHHHHhccCCC---------CHHhHHHHHHHHHHCCChHHHHHHHHHHHHC--CC--
Q 036003 260 V----KVNTALIDMHAKCGRLDDAVSVFDNMSGK---------DTQAWSAMIVAYATHGQGHKSILMFEEMMKA--QV-- 322 (558)
Q Consensus 260 ~----~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~-- 322 (558)
. .+.+.+...+...|++++|..+++..... -..++..+...|...|++++|..+++++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 12222333333445555555555443210 1223445555555555555555555554431 11
Q ss_pred CCC-HHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCC-----hhHHHHHHHHHhhcCCHHHHHHHHHh
Q 036003 323 SPD-EITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPG-----IKHYGCMVDLLGRAGRLDEAYRFIDE 387 (558)
Q Consensus 323 ~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~~~li~~~~~~g~~~~A~~~~~~ 387 (558)
.+. ...+..++..|...|++++|..++++......-.++ ...+..+...+...|++++|...|.+
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~ 241 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFE 241 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 111 134444555555555555555555544432110011 12333444444455555555554444
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=98.19 E-value=1.7e-05 Score=79.10 Aligned_cols=144 Identities=10% Similarity=0.033 Sum_probs=100.3
Q ss_pred CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHH
Q 036003 290 DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMV 369 (558)
Q Consensus 290 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 369 (558)
....|..+...|.+.|++++|+..|++..+. .|+...+ . -+... +... .....|..+.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~--~p~~~~~----------~-~~~~~----~~~~-----~~~~~~~nla 324 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSW--LEMEYGL----------S-EKESK----ASES-----FLLAAFLNLA 324 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTTCCSC----------C-HHHHH----HHHH-----HHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccC----------C-hHHHH----HHHH-----HHHHHHHHHH
Confidence 3445667777777777777777777777652 1211000 0 00000 0000 0245778888
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHH
Q 036003 370 DLLGRAGRLDEAYRFIDEL-PIK-STPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDV 447 (558)
Q Consensus 370 ~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 447 (558)
.+|.+.|++++|+..+++. ... .+...|..+..+|...|++++|...|+++++++|.+..++..+..++.+.|+++++
T Consensus 325 ~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 325 MCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 8899999999999999887 223 36788999999999999999999999999999999999999999999999999887
Q ss_pred HH-HHHHHH
Q 036003 448 DY-LRKLMK 455 (558)
Q Consensus 448 ~~-~~~~m~ 455 (558)
.+ .+++|.
T Consensus 405 ~~~~~~~~f 413 (457)
T 1kt0_A 405 DRRIYANMF 413 (457)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHHH
Confidence 64 455554
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.17 E-value=5e-06 Score=72.48 Aligned_cols=148 Identities=11% Similarity=0.005 Sum_probs=83.5
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCC---CCH----------------
Q 036003 231 ALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSG---KDT---------------- 291 (558)
Q Consensus 231 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~---------------- 291 (558)
........|+++.+...++.-.... ......+..+...+.+.|++++|...|++... .+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~ 88 (198)
T 2fbn_A 10 HSSGRENLYFQGAKKSIYDYTDEEK-VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEI 88 (198)
T ss_dssp ------------CCCSGGGCCHHHH-HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHH
T ss_pred hhhhhhhhhhccccCchhhCCHHHH-HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHH
Confidence 3344455667777766665332211 12345667788899999999999999998753 222
Q ss_pred HhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHH
Q 036003 292 QAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDL 371 (558)
Q Consensus 292 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 371 (558)
..|..+..+|...|++++|+..+++..+.. +.+...+..+..++...|++++|...|++..+. .+.+...+..+..+
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~ 165 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASL--NPNNLDIRNSYELC 165 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--STTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHH
Confidence 556666667777777777777777766642 224456666666666667777777666666542 12234455555555
Q ss_pred HhhcCCHHHHH
Q 036003 372 LGRAGRLDEAY 382 (558)
Q Consensus 372 ~~~~g~~~~A~ 382 (558)
+...++..++.
T Consensus 166 ~~~~~~~~~~~ 176 (198)
T 2fbn_A 166 VNKLKEARKKD 176 (198)
T ss_dssp HHHHHHHHC--
T ss_pred HHHHHHHHHHH
Confidence 55555544443
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=98.16 E-value=3.7e-06 Score=84.23 Aligned_cols=85 Identities=14% Similarity=0.049 Sum_probs=42.3
Q ss_pred HHHHCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCH
Q 036003 300 AYATHGQGHKSILMFEEMMKAQVSP-DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRL 378 (558)
Q Consensus 300 ~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~ 378 (558)
.+.+.|++++|+..|++..+. .| +...+..+..++.+.|++++|.+.+++..+ --+.+...+..+..+|.+.|++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--l~p~~~~~~~~lg~~~~~~g~~ 90 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIE--LDKKYIKGYYRRAASNMALGKF 90 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SCTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhCCHHHHHHHHHHHHHh--CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCH
Confidence 344455555555555555553 22 244555555555555555555555555543 1222344444555555555555
Q ss_pred HHHHHHHHhC
Q 036003 379 DEAYRFIDEL 388 (558)
Q Consensus 379 ~~A~~~~~~~ 388 (558)
++|.+.|++.
T Consensus 91 ~eA~~~~~~a 100 (477)
T 1wao_1 91 RAALRDYETV 100 (477)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555443
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.15 E-value=1.7e-06 Score=68.12 Aligned_cols=82 Identities=15% Similarity=0.052 Sum_probs=49.3
Q ss_pred cCCHHHHHHHHHhC-CC---CC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHH
Q 036003 375 AGRLDEAYRFIDEL-PI---KS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDY 449 (558)
Q Consensus 375 ~g~~~~A~~~~~~~-~~---~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 449 (558)
.|++++|+..|++. .. .| +...+..+..++...|++++|+..|+++++.+|.++.++..++.+|.+.|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 45555666666554 22 12 234566666666666677777777777666666666666666666666777777766
Q ss_pred HHHHHHh
Q 036003 450 LRKLMKD 456 (558)
Q Consensus 450 ~~~~m~~ 456 (558)
.+++...
T Consensus 83 ~~~~al~ 89 (117)
T 3k9i_A 83 LLLKIIA 89 (117)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6666654
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=98.14 E-value=1.8e-05 Score=63.04 Aligned_cols=106 Identities=5% Similarity=-0.062 Sum_probs=56.3
Q ss_pred HHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC----C-CCCC----HHHHHH
Q 036003 329 FLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL----P-IKST----PILWRT 399 (558)
Q Consensus 329 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~-~~~~----~~~~~~ 399 (558)
+..+...+...|++++|...|++.... .+.+...+..+...|...|++++|...+++. + ..++ ..++..
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 334444444455555555555554432 1223444455555555555555555555544 1 0111 455666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHH
Q 036003 400 LLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNL 437 (558)
Q Consensus 400 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 437 (558)
+..++...|++++|.+.|+++++..| ++.....+..+
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~ 121 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHH
Confidence 77777777777777777777777666 34444444333
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.14 E-value=1.6e-05 Score=66.08 Aligned_cols=93 Identities=10% Similarity=0.058 Sum_probs=58.2
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCC------CCcc
Q 036003 364 HYGCMVDLLGRAGRLDEAYRFIDEL----PIKST----PILWRTLLSSCSSHNNLGLAKQVIERIFELDD------SHGG 429 (558)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------~~~~ 429 (558)
.+..+...+...|++++|.+.+++. +..++ ...+..+...+...|++++|.+.++++++..+ ....
T Consensus 51 ~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~ 130 (164)
T 3ro3_A 51 AYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGR 130 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHH
Confidence 4445555555556666665555543 10111 34556667777777888888888777765431 1134
Q ss_pred cHHhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 430 DYVILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 430 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
.+..++.+|...|++++|.+.+++..+
T Consensus 131 ~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 131 ACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 567778888888888888888877654
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.12 E-value=4.4e-05 Score=60.89 Aligned_cols=26 Identities=12% Similarity=0.096 Sum_probs=13.6
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHH
Q 036003 294 WSAMIVAYATHGQGHKSILMFEEMMK 319 (558)
Q Consensus 294 ~~~li~~~~~~~~~~~a~~~~~~m~~ 319 (558)
|..+..++...|++++|++.|++...
T Consensus 86 ~~~lg~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 86 MSRAGNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 44444455555555555555555544
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.11 E-value=1.5e-05 Score=63.09 Aligned_cols=96 Identities=8% Similarity=-0.058 Sum_probs=63.6
Q ss_pred HHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc
Q 036003 330 LGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSH 407 (558)
Q Consensus 330 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~ 407 (558)
..+...+.+.|++++|...|++..+. -+.+...|..+..++.+.|++++|+..|++. ...| +...+..+..++...
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~--~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~~ 98 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQK--EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNE 98 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 34445566677777777777777652 2335666777777777777777777777775 2233 556777777888888
Q ss_pred CCHHHHHHHHHHHHccCCCC
Q 036003 408 NNLGLAKQVIERIFELDDSH 427 (558)
Q Consensus 408 g~~~~a~~~~~~~~~~~~~~ 427 (558)
|++++|...++++++.+|.+
T Consensus 99 g~~~~A~~~~~~al~~~P~~ 118 (121)
T 1hxi_A 99 HNANAALASLRAWLLSQPQY 118 (121)
T ss_dssp HHHHHHHHHHHHHHC-----
T ss_pred CCHHHHHHHHHHHHHhCcCC
Confidence 88888888888888877764
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=98.10 E-value=3.1e-05 Score=61.75 Aligned_cols=99 Identities=12% Similarity=0.032 Sum_probs=65.8
Q ss_pred HHHHHHccCChHHHHHHHHHchhhcCCCCCh---hHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-C---HHHHHHHHHH
Q 036003 332 LLYACSHTGLVDEGWNYFYSMRDKYGIVPGI---KHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-T---PILWRTLLSS 403 (558)
Q Consensus 332 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~---~~~~~~l~~~ 403 (558)
+...+...|++++|...|+.+.+. .+.+. ..+..+..++.+.|++++|...|++. ...| + ...+..+..+
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLEL--YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHH--CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 344556667777777777776653 11222 45666677777777777777777765 2222 2 4567777788
Q ss_pred HHhcCCHHHHHHHHHHHHccCCCCcccHH
Q 036003 404 CSSHNNLGLAKQVIERIFELDDSHGGDYV 432 (558)
Q Consensus 404 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 432 (558)
+...|++++|...|+++++..|.++....
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~~p~~~~~~~ 114 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQYPGSDAARV 114 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTSHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCCCChHHHH
Confidence 88888888888888888888877654433
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.10 E-value=1.8e-05 Score=78.77 Aligned_cols=123 Identities=9% Similarity=0.072 Sum_probs=95.8
Q ss_pred HHHccCChHHHHHHHHHchhhcC--CCC----ChhHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCCH-HHHH
Q 036003 335 ACSHTGLVDEGWNYFYSMRDKYG--IVP----GIKHYGCMVDLLGRAGRLDEAYRFIDEL---------PIKSTP-ILWR 398 (558)
Q Consensus 335 ~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~~~~-~~~~ 398 (558)
.+...|++++|..++++..+... +.+ ...+++.|...|...|++++|+.++++. +..|+. .+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35577888888888877765321 122 2467888889999999999998888775 334443 6789
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHc-----cCCCCccc---HHhHHHHHHhcCChHHHHHHHHHHHhC
Q 036003 399 TLLSSCSSHNNLGLAKQVIERIFE-----LDDSHGGD---YVILSNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 399 ~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~---~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
.|...|...|++++|+.+++++++ +||+++.+ ...+..++...|.+++|..+++++++.
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999876 46777654 567788888999999999999999764
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=98.06 E-value=0.00091 Score=62.46 Aligned_cols=180 Identities=8% Similarity=0.015 Sum_probs=131.1
Q ss_pred HHHHHHHHhccC---CCCHHhHHHHHHHHHHCCC--hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCC-hHHHHHHH
Q 036003 276 LDDAVSVFDNMS---GKDTQAWSAMIVAYATHGQ--GHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGL-VDEGWNYF 349 (558)
Q Consensus 276 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~-~~~a~~~~ 349 (558)
+++++.+++.+. .++..+|+.-.-.+...++ +++++.+++++.+...+ |...|+.-.-.+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~dpr-Ny~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADER-NFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 567777777765 3478888888888888884 89999999999986433 66777777777777888 58999999
Q ss_pred HHchhhcCCCCChhHHHHHHHHHhhc--------------CCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhc------
Q 036003 350 YSMRDKYGIVPGIKHYGCMVDLLGRA--------------GRLDEAYRFIDEL-PI-KSTPILWRTLLSSCSSH------ 407 (558)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~li~~~~~~--------------g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~------ 407 (558)
..+.+. -+-|...|+.....+.+. +.++++++.+++. .. +.|...|+-+-..+.+.
T Consensus 169 ~~~I~~--~p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~ 246 (331)
T 3dss_A 169 DSLITR--NFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCEL 246 (331)
T ss_dssp HHHHHH--CSCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGC
T ss_pred HHHHHH--CCCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCcccc
Confidence 999874 345667777666555544 4578888888886 22 34778887655555444
Q ss_pred -----CCHHHHHHHHHHHHccCCCCcccHHhHHHH---HHhcCChHHHHHHHHHHHhCC
Q 036003 408 -----NNLGLAKQVIERIFELDDSHGGDYVILSNL---CARAGRWEDVDYLRKLMKDRG 458 (558)
Q Consensus 408 -----g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~A~~~~~~m~~~g 458 (558)
+.++++++.++++++..|++.-.+..++.. ....|..+++...+.++.+.+
T Consensus 247 ~~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~D 305 (331)
T 3dss_A 247 SVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 305 (331)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHHC
T ss_pred chHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHHhC
Confidence 457899999999999999885444443322 224677888999999998743
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=98.04 E-value=7.2e-06 Score=78.16 Aligned_cols=147 Identities=9% Similarity=-0.026 Sum_probs=83.1
Q ss_pred HHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHH
Q 036003 291 TQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVD 370 (558)
Q Consensus 291 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 370 (558)
...|..+...+.+.|++++|+..|++... ..|+... +...|+.+++...+ . ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l---~--------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAV---K--------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHH---H--------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHH---H--------HHHHHHHHH
Confidence 44577777888888999999999998877 3454332 22334444433222 1 136788888
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHH-hcCChHHH
Q 036003 371 LLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCA-RAGRWEDV 447 (558)
Q Consensus 371 ~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~~~A 447 (558)
+|.+.|++++|+..+++. ...| +...|..+..+|...|++++|...|+++++++|.+..++..|..+.. ..+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999887 3333 67888999999999999999999999999999998888888877743 44567778
Q ss_pred HHHHHHHHhC
Q 036003 448 DYLRKLMKDR 457 (558)
Q Consensus 448 ~~~~~~m~~~ 457 (558)
...|++|...
T Consensus 319 ~~~~~~~l~~ 328 (338)
T 2if4_A 319 KEMYKGIFKG 328 (338)
T ss_dssp ----------
T ss_pred HHHHHHhhCC
Confidence 8888887654
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=98.04 E-value=2e-05 Score=65.42 Aligned_cols=131 Identities=11% Similarity=0.034 Sum_probs=73.9
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCC----hhH
Q 036003 294 WSAMIVAYATHGQGHKSILMFEEMMKAQV-SPD----EITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPG----IKH 364 (558)
Q Consensus 294 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~----~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~ 364 (558)
+..+...|...|++++|+..+++..+... .++ ...+..+...+...|++++|...+++......-..+ ...
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 44444455555555555555554443110 011 134555555666666666666666665442111111 345
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC----CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHccC
Q 036003 365 YGCMVDLLGRAGRLDEAYRFIDEL----PIKST----PILWRTLLSSCSSHNNLGLAKQVIERIFELD 424 (558)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~~~~~~----~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 424 (558)
+..+...+...|++++|.+.+++. ....+ ..++..+...+...|++++|.+.++++++..
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 159 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEIS 159 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHH
Confidence 556666777777777777776654 11111 3456677788888889999988888887654
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=98.03 E-value=2.4e-05 Score=75.40 Aligned_cols=139 Identities=6% Similarity=-0.080 Sum_probs=102.8
Q ss_pred HHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHH
Q 036003 291 TQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVD 370 (558)
Q Consensus 291 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 370 (558)
...|..+...+.+.|++++|+..|++..+. .++. ......+ .... .-+.+...|..+..
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~----------~~~~~~~-------~~~~--~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGS----------RAAAEDA-------DGAK--LQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHH----------HHHSCHH-------HHGG--GHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcC----------ccccChH-------HHHH--HHHHHHHHHHHHHH
Confidence 345777777888888888888888877652 1110 0000111 1110 01124567888999
Q ss_pred HHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHH
Q 036003 371 LLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVD 448 (558)
Q Consensus 371 ~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 448 (558)
+|.+.|++++|++.+++. ...| +...|..+..+|...|++++|...|++++++.|.+...+..+..++...++.+++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999987 4445 57888999999999999999999999999999999999999999998888887776
Q ss_pred HH
Q 036003 449 YL 450 (558)
Q Consensus 449 ~~ 450 (558)
+.
T Consensus 362 k~ 363 (370)
T 1ihg_A 362 KA 363 (370)
T ss_dssp HC
T ss_pred HH
Confidence 53
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=98.00 E-value=5.4e-06 Score=65.20 Aligned_cols=91 Identities=10% Similarity=-0.006 Sum_probs=64.5
Q ss_pred cCChHHHHHHHHHchhhcC--CCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHH
Q 036003 339 TGLVDEGWNYFYSMRDKYG--IVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAK 414 (558)
Q Consensus 339 ~g~~~~a~~~~~~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~ 414 (558)
.|++++|...|++..+. + -+.+...+..+...|.+.|++++|++.|++. ...| +...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 46777777777777642 2 1234566777788888888888888888876 2233 5677888888888889999999
Q ss_pred HHHHHHHccCCCCccc
Q 036003 415 QVIERIFELDDSHGGD 430 (558)
Q Consensus 415 ~~~~~~~~~~~~~~~~ 430 (558)
..++++++..|.++..
T Consensus 82 ~~~~~al~~~p~~~~~ 97 (117)
T 3k9i_A 82 ELLLKIIAETSDDETI 97 (117)
T ss_dssp HHHHHHHHHHCCCHHH
T ss_pred HHHHHHHHhCCCcHHH
Confidence 9999988888877544
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.00 E-value=1.7e-05 Score=66.39 Aligned_cols=68 Identities=15% Similarity=0.066 Sum_probs=57.9
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCc
Q 036003 361 GIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHG 428 (558)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 428 (558)
+...|..+..+|.+.|++++|+..+++. ...| +...|..+..++...|++++|...|+++++++|.++
T Consensus 62 ~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 62 NIPLYANMSQCYLNIGDLHEAEETSSEVLKREETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred HHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 3467888888899999999999988886 3333 678889999999999999999999999999999876
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.98 E-value=2.1e-05 Score=74.89 Aligned_cols=152 Identities=13% Similarity=0.042 Sum_probs=81.2
Q ss_pred hhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 036003 260 VKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHT 339 (558)
Q Consensus 260 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~ 339 (558)
...+..+...+.+.|++++|...|++....+.... .+...++.+++...+. ...|..+..++.+.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~-----~~~~~~~~~~~~~~l~----------~~~~~nla~~~~~~ 243 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF-----MFQLYGKYQDMALAVK----------NPCHLNIAACLIKL 243 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH-----HHTCCHHHHHHHHHHH----------THHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch-----hhhhcccHHHHHHHHH----------HHHHHHHHHHHHHc
Confidence 44567788899999999999999998653322111 1222333333332221 13677788888999
Q ss_pred CChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHH-HHhcCCHHHHHHH
Q 036003 340 GLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKST-PILWRTLLSS-CSSHNNLGLAKQV 416 (558)
Q Consensus 340 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~-~~~~g~~~~a~~~ 416 (558)
|++++|...+++..+. -+.+...|..+..+|...|++++|...|++. ...|+ ...+..+... ....+..+++...
T Consensus 244 g~~~~A~~~~~~al~~--~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a~~~ 321 (338)
T 2if4_A 244 KRYDEAIGHCNIVLTE--EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQKEM 321 (338)
T ss_dssp TCCHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred CCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999988863 2446788888999999999999999999987 44554 3445555544 2345677888899
Q ss_pred HHHHHccCCCCc
Q 036003 417 IERIFELDDSHG 428 (558)
Q Consensus 417 ~~~~~~~~~~~~ 428 (558)
|+++++..|.++
T Consensus 322 ~~~~l~~~p~~~ 333 (338)
T 2if4_A 322 YKGIFKGKDEGG 333 (338)
T ss_dssp ------------
T ss_pred HHHhhCCCCCCC
Confidence 999988887654
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.88 E-value=2.4e-05 Score=60.43 Aligned_cols=92 Identities=12% Similarity=-0.002 Sum_probs=73.4
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC------cccHH
Q 036003 361 GIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIK-STPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH------GGDYV 432 (558)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------~~~~~ 432 (558)
+...+..+...+.+.|++++|.+.|++. ... .+...|..+..++...|++++|++.++++++..|.+ ...+.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 4556777888888899999999988886 223 367788889999999999999999999999999988 66677
Q ss_pred hHHHHHHhcCChHHHHHHHH
Q 036003 433 ILSNLCARAGRWEDVDYLRK 452 (558)
Q Consensus 433 ~l~~~~~~~g~~~~A~~~~~ 452 (558)
.+..++...|++++|...++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 77777777777766655544
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.87 E-value=5.5e-05 Score=57.33 Aligned_cols=66 Identities=23% Similarity=0.205 Sum_probs=60.6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhC
Q 036003 392 STPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 392 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
.+...+..+..++...|++++|+..|+++++.+|.++.+|..++.+|...|++++|.+.+++..+.
T Consensus 5 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 5 EDPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 367788899999999999999999999999999999999999999999999999999999988753
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.87 E-value=4.5e-05 Score=62.41 Aligned_cols=73 Identities=14% Similarity=0.125 Sum_probs=55.1
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC-CC-------CCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHccCCCCccc
Q 036003 364 HYGCMVDLLGRAGRLDEAYRFIDEL-PI-------KST-PILW----RTLLSSCSSHNNLGLAKQVIERIFELDDSHGGD 430 (558)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~~-~~-------~~~-~~~~----~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 430 (558)
.|..+..++.+.|++++|+..+++. .. .|+ ...| .....++...|++++|+..|++++++.|.+...
T Consensus 59 a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~ 138 (159)
T 2hr2_A 59 CHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGE 138 (159)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHH
Confidence 5666666666667666666666554 33 665 4677 889999999999999999999999999988766
Q ss_pred HHhHHH
Q 036003 431 YVILSN 436 (558)
Q Consensus 431 ~~~l~~ 436 (558)
+..+-.
T Consensus 139 ~~~~~~ 144 (159)
T 2hr2_A 139 TPGKER 144 (159)
T ss_dssp CTTHHH
T ss_pred HHHHHH
Confidence 554433
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00065 Score=69.29 Aligned_cols=168 Identities=11% Similarity=0.048 Sum_probs=122.7
Q ss_pred HHHHHHHHhccCC---CCHHhHHHHHHHHHHCCC----------hHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccC--
Q 036003 276 LDDAVSVFDNMSG---KDTQAWSAMIVAYATHGQ----------GHKSILMFEEMMKAQVSPDEITFLGLLYACSHTG-- 340 (558)
Q Consensus 276 ~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g-- 340 (558)
-++|++.++.+.. .+..+|+.--.++...|+ ++++++.++++.+...+ +...|..-.-.+.+.+
T Consensus 45 ~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~y~aW~hR~w~l~~l~~~ 123 (567)
T 1dce_A 45 DESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SYGTWHHRCWLLSRLPEP 123 (567)
T ss_dssp SHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCSSC
T ss_pred CHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcccc
Confidence 3455666666542 244556655555555555 78888888888875322 5667777777777778
Q ss_pred ChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcC-CHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhc----------
Q 036003 341 LVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAG-RLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSH---------- 407 (558)
Q Consensus 341 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g-~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~---------- 407 (558)
+++++.+.++++.+. -+-+...|+.-...+.+.| .++++++.++++ ...| |...|+.....+...
T Consensus 124 ~~~~el~~~~k~l~~--d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~~~~~ 201 (567)
T 1dce_A 124 NWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQG 201 (567)
T ss_dssp CHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCC
T ss_pred cHHHHHHHHHHHHhh--ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccccccc
Confidence 668888888888873 3446677777777777777 788888888887 3344 667787777666553
Q ss_pred ----CCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHH
Q 036003 408 ----NNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWED 446 (558)
Q Consensus 408 ----g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 446 (558)
+.++++.+.+++++..+|.+..+|..+...+.+.++.++
T Consensus 202 ~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 202 RLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 567999999999999999999999999999999888555
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.84 E-value=9.7e-05 Score=71.16 Aligned_cols=113 Identities=6% Similarity=-0.093 Sum_probs=85.2
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCC-CHHHHHHHHHHH
Q 036003 326 EITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKS-TPILWRTLLSSC 404 (558)
Q Consensus 326 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~ 404 (558)
...+..+...+.+.|++++|...|++..+.. +.. ......+++. ...| +...|..+..+|
T Consensus 223 a~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~---~~~----------~~~~~~~~~~------~~~~~~~~~~~nla~~~ 283 (370)
T 1ihg_A 223 SEDLKNIGNTFFKSQNWEMAIKKYTKVLRYV---EGS----------RAAAEDADGA------KLQPVALSCVLNIGACK 283 (370)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH---HHH----------HHHSCHHHHG------GGHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh---hcC----------ccccChHHHH------HHHHHHHHHHHHHHHHH
Confidence 4556677777788888888888888776520 000 0001111111 1122 457888899999
Q ss_pred HhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhC
Q 036003 405 SSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 405 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
.+.|++++|+..++++++.+|.++.+|..++.+|...|++++|.+.|++..+.
T Consensus 284 ~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l 336 (370)
T 1ihg_A 284 LKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 336 (370)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999998774
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.81 E-value=0.00021 Score=71.15 Aligned_cols=95 Identities=7% Similarity=-0.031 Sum_probs=75.6
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhC----CCCC-------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 036003 364 HYGCMVDLLGRAGRLDEAYRFIDEL----PIKS-------------TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS 426 (558)
Q Consensus 364 ~~~~li~~~~~~g~~~~A~~~~~~~----~~~~-------------~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 426 (558)
.+..+...|.+.|++++|...|++. +..+ ....|..+..+|.+.|++++|+..++++++++|.
T Consensus 270 ~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~ 349 (457)
T 1kt0_A 270 IVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLDSA 349 (457)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCc
Confidence 4444555555555555555555554 1111 1578888999999999999999999999999999
Q ss_pred CcccHHhHHHHHHhcCChHHHHHHHHHHHhCC
Q 036003 427 HGGDYVILSNLCARAGRWEDVDYLRKLMKDRG 458 (558)
Q Consensus 427 ~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 458 (558)
+..+|..++.+|...|++++|...|++..+..
T Consensus 350 ~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~ 381 (457)
T 1kt0_A 350 NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN 381 (457)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 99999999999999999999999999998753
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.81 E-value=7.8e-05 Score=54.98 Aligned_cols=81 Identities=16% Similarity=0.238 Sum_probs=61.5
Q ss_pred hhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHH
Q 036003 362 IKHYGCMVDLLGRAGRLDEAYRFIDEL-PI-KSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCA 439 (558)
Q Consensus 362 ~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 439 (558)
...+..+...+...|++++|...|++. .. +.+...+..+..++...|++++|...++++++.+|.++.++..+..++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 456666777777888888888887776 22 2356777888888888888888888888888888888888887777776
Q ss_pred hcC
Q 036003 440 RAG 442 (558)
Q Consensus 440 ~~g 442 (558)
+.|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 544
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.76 E-value=0.00011 Score=57.16 Aligned_cols=78 Identities=10% Similarity=0.069 Sum_probs=63.8
Q ss_pred HHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhC
Q 036003 380 EAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 380 ~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
+|++.|++. ...| +...+..+...+...|++++|...|+++++.+|.+...|..++.+|...|++++|...|++..+.
T Consensus 3 ~a~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 82 (115)
T 2kat_A 3 AITERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLAA 82 (115)
T ss_dssp CHHHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 355555554 3333 56788888889999999999999999999999988888999999999999999999999888653
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.62 E-value=0.00054 Score=55.36 Aligned_cols=111 Identities=9% Similarity=-0.025 Sum_probs=59.6
Q ss_pred ChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHH
Q 036003 341 LVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSS----HNNLGLAKQV 416 (558)
Q Consensus 341 ~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~ 416 (558)
++++|.+.|++..+. + .+. .. |...|...+.+++|.++|++.-...++..+..|...|.. .+++++|.+.
T Consensus 10 d~~~A~~~~~~aa~~-g-~~~--a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~ 83 (138)
T 1klx_A 10 DLKKAIQYYVKACEL-N-EMF--GC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQY 83 (138)
T ss_dssp HHHHHHHHHHHHHHT-T-CTT--HH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHH
T ss_pred CHHHHHHHHHHHHcC-C-CHh--hh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHHH
Confidence 345555555555442 2 111 11 444555555555555555554223455555555555555 5566666666
Q ss_pred HHHHHccCCCCcccHHhHHHHHHh----cCChHHHHHHHHHHHhCCC
Q 036003 417 IERIFELDDSHGGDYVILSNLCAR----AGRWEDVDYLRKLMKDRGV 459 (558)
Q Consensus 417 ~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~m~~~g~ 459 (558)
|+++.+.+ ++.++..|..+|.. .+++++|.+.|++..+.|.
T Consensus 84 ~~~Aa~~g--~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 84 YSKACGLN--DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHcCC--CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 66665553 33455666666665 5666666666666665554
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.56 E-value=5.2e-05 Score=61.91 Aligned_cols=85 Identities=7% Similarity=-0.039 Sum_probs=66.1
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC----------HHHHHHHHHHHHccCCCCcccHHhHHHHHHhc
Q 036003 374 RAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNN----------LGLAKQVIERIFELDDSHGGDYVILSNLCARA 441 (558)
Q Consensus 374 ~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 441 (558)
+.+.+++|.+.+++. ...| +...|..+..++...++ +++|+..|+++++++|.+..+|..++.+|...
T Consensus 14 r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 445566666666665 2233 55666666666666655 56999999999999999999999999999987
Q ss_pred C-----------ChHHHHHHHHHHHhCC
Q 036003 442 G-----------RWEDVDYLRKLMKDRG 458 (558)
Q Consensus 442 g-----------~~~~A~~~~~~m~~~g 458 (558)
| ++++|.+.|++..+..
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~ 121 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQ 121 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHC
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhC
Confidence 5 8999999999998743
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00043 Score=67.80 Aligned_cols=116 Identities=16% Similarity=0.131 Sum_probs=86.7
Q ss_pred HHHHhhcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHc-----cCCCCc---cc
Q 036003 369 VDLLGRAGRLDEAYRFIDEL---------PIKST-PILWRTLLSSCSSHNNLGLAKQVIERIFE-----LDDSHG---GD 430 (558)
Q Consensus 369 i~~~~~~g~~~~A~~~~~~~---------~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~---~~ 430 (558)
+..+.+.|++++|+.++++. +..|+ ..+++.+..+|...|++++|+.+++++++ .+|.++ .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 44455778888888888765 11122 35788899999999999999999999875 345554 46
Q ss_pred HHhHHHHHHhcCChHHHHHHHHHHHhCCCccCCcccEEEECCEEEEEeeCCCCCCChHHHHHHHHHHHHHHH
Q 036003 431 YVILSNLCARAGRWEDVDYLRKLMKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELK 502 (558)
Q Consensus 431 ~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~ 502 (558)
++.|+..|...|++++|..++++..+.-.. .-...||...++...+.+...+|+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~------------------~lG~~Hp~~~~~~~~l~~~~~e~~ 427 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRV------------------THGREHSLIEDLILLLEECDANIR 427 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHH------------------HTCTTSHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHH------------------hcCCCChHHHHHHHHHHHHHHHHh
Confidence 889999999999999999999988652110 112378888888888888877775
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.54 E-value=0.00036 Score=69.42 Aligned_cols=123 Identities=12% Similarity=-0.045 Sum_probs=82.5
Q ss_pred HHHHCCChHHHHHHHHHHHHC---CC---CCC-HHHHHHHHHHHHccCChHHHHHHHHHchhhc----CC-CC-ChhHHH
Q 036003 300 AYATHGQGHKSILMFEEMMKA---QV---SPD-EITFLGLLYACSHTGLVDEGWNYFYSMRDKY----GI-VP-GIKHYG 366 (558)
Q Consensus 300 ~~~~~~~~~~a~~~~~~m~~~---g~---~p~-~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~----~~-~~-~~~~~~ 366 (558)
.+...|++++|+.++++..+. -+ .|+ ..+++.|...|...|++++|..++++..+.+ |- .| ...+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 345667777777777766542 11 222 2567777788888888888887777765421 11 12 245677
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC---------CCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 036003 367 CMVDLLGRAGRLDEAYRFIDEL---------PIKSTP-ILWRTLLSSCSSHNNLGLAKQVIERIFE 422 (558)
Q Consensus 367 ~li~~~~~~g~~~~A~~~~~~~---------~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 422 (558)
.|...|...|++++|+.++++. +..|+. .+...+..++...+.+++|+.+++++.+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888888887765 223333 3455666777788899999999988865
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=97.53 E-value=0.0004 Score=51.50 Aligned_cols=70 Identities=10% Similarity=0.032 Sum_probs=60.2
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 036003 391 KSTPILWRTLLSSCSSHNN---LGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVL 460 (558)
Q Consensus 391 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 460 (558)
.+++..+..+..++...++ .++|..+++++++.+|.++.+...++..+.+.|++++|...|+++.+....
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 3567778888888765554 799999999999999999999999999999999999999999999886543
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.49 E-value=0.00029 Score=54.10 Aligned_cols=66 Identities=6% Similarity=-0.095 Sum_probs=61.2
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhCC
Q 036003 393 TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRG 458 (558)
Q Consensus 393 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 458 (558)
+...|..+...+...|++++|.+.|+++++..|.++..+..++.+|.+.|++++|.+.+++..+..
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 68 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT 68 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 456788899999999999999999999999999999999999999999999999999999998743
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.45 E-value=0.0018 Score=52.18 Aligned_cols=112 Identities=11% Similarity=-0.028 Sum_probs=91.4
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhh----cCCHHH
Q 036003 305 GQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR----AGRLDE 380 (558)
Q Consensus 305 ~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~ 380 (558)
+++++|+.+|++..+.| .|+.. |...|...+.+++|.+.|++..+. -+...+..|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 46788999999999887 34444 666667777888899999998874 366788888888887 889999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHccCC
Q 036003 381 AYRFIDELPIKSTPILWRTLLSSCSS----HNNLGLAKQVIERIFELDD 425 (558)
Q Consensus 381 A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~ 425 (558)
|.++|++.-...++..+..|...|.. .++.++|.+.|+++.+.+.
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999988434678888889999988 8999999999999988764
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.43 E-value=0.00027 Score=54.89 Aligned_cols=81 Identities=11% Similarity=0.044 Sum_probs=55.7
Q ss_pred HHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036003 344 EGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIK-STPILWRTLLSSCSSHNNLGLAKQVIERIF 421 (558)
Q Consensus 344 ~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 421 (558)
.|...|++..+ ..+.+...+..+...|...|++++|...|++. ... .+...|..+..++...|++++|...|++++
T Consensus 3 ~a~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 3 AITERLEAMLA--QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHT--TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34555666554 22335667777777777777888777777775 222 346677778888888888888888888888
Q ss_pred ccCCC
Q 036003 422 ELDDS 426 (558)
Q Consensus 422 ~~~~~ 426 (558)
+..|.
T Consensus 81 ~~~~~ 85 (115)
T 2kat_A 81 AAAQS 85 (115)
T ss_dssp HHHHH
T ss_pred Hhccc
Confidence 77654
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.34 E-value=0.0005 Score=67.21 Aligned_cols=83 Identities=8% Similarity=-0.071 Sum_probs=65.3
Q ss_pred hcCCHHHHHHHHHhC---------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHc-----cCCCCc---ccHHhHH
Q 036003 374 RAGRLDEAYRFIDEL---------PIKST-PILWRTLLSSCSSHNNLGLAKQVIERIFE-----LDDSHG---GDYVILS 435 (558)
Q Consensus 374 ~~g~~~~A~~~~~~~---------~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~---~~~~~l~ 435 (558)
..|++++|+.++++. +..|+ ..+++.|..+|...|++++|+.+++++++ .+|.++ .+|+.|+
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 346777777777654 22333 36788999999999999999999999876 355555 4688999
Q ss_pred HHHHhcCChHHHHHHHHHHHh
Q 036003 436 NLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 436 ~~~~~~g~~~~A~~~~~~m~~ 456 (558)
..|..+|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999998865
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=97.32 E-value=0.00063 Score=49.88 Aligned_cols=65 Identities=14% Similarity=0.216 Sum_probs=60.0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhC
Q 036003 393 TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 393 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
+...+..+...+...|++++|...++++++..|.++..+..++.+|.+.|++++|.+.+++..+.
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 72 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 72 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc
Confidence 35678888899999999999999999999999999999999999999999999999999998764
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.30 E-value=0.00014 Score=59.28 Aligned_cols=88 Identities=13% Similarity=0.031 Sum_probs=57.6
Q ss_pred cCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCC----------HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh
Q 036003 339 TGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGR----------LDEAYRFIDEL-PIKS-TPILWRTLLSSCSS 406 (558)
Q Consensus 339 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~ 406 (558)
.+.+++|.+.++...+. -+.+...|..+..++.+.++ +++|+..|++. .+.| +...|..+..+|..
T Consensus 15 ~~~feeA~~~~~~Ai~l--~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKS--NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHH
Confidence 34455555555555542 22345555555555555544 34777777765 3344 45677777777776
Q ss_pred c-----------CCHHHHHHHHHHHHccCCCCc
Q 036003 407 H-----------NNLGLAKQVIERIFELDDSHG 428 (558)
Q Consensus 407 ~-----------g~~~~a~~~~~~~~~~~~~~~ 428 (558)
. |++++|++.|+++++++|.+.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~ 125 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDEQPDNT 125 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHhCCCCH
Confidence 5 489999999999999999874
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0018 Score=52.22 Aligned_cols=66 Identities=6% Similarity=-0.058 Sum_probs=51.0
Q ss_pred CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHccC-C-CCcccHHhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 391 KSTPILWRTLLSSCSSHN---NLGLAKQVIERIFELD-D-SHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 391 ~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
.++..+...+..++++.+ +.++++.+|++.++.+ | .+...+..|..+|.+.|++++|.+.++.+.+
T Consensus 29 ~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 29 SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 356777777777888777 5668888888888877 5 3466777888888888888888888888876
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.26 E-value=0.0052 Score=62.61 Aligned_cols=149 Identities=9% Similarity=-0.026 Sum_probs=118.6
Q ss_pred CCChHHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHccCC----------hHHHHHHHHHchhhcCCCCChhHHHHHHHHH
Q 036003 304 HGQGHKSILMFEEMMKAQVSPD-EITFLGLLYACSHTGL----------VDEGWNYFYSMRDKYGIVPGIKHYGCMVDLL 372 (558)
Q Consensus 304 ~~~~~~a~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~g~----------~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 372 (558)
....++|++.++++... .|+ ...|+.--.++...|+ ++++.+.++.+.+. -+-+..+|..-...+
T Consensus 42 ~~~~eeal~~~~~~l~~--nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~--~pK~y~aW~hR~w~l 117 (567)
T 1dce_A 42 GELDESVLELTSQILGA--NPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV--NPKSYGTWHHRCWLL 117 (567)
T ss_dssp TCCSHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHH--CchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh--CCCCHHHHHHHHHHH
Confidence 34457889999999984 554 4556655555666666 89999999999873 345677888777888
Q ss_pred hhcC--CHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHccCCCCcccHHhHHHHHHhc------
Q 036003 373 GRAG--RLDEAYRFIDEL-PI-KSTPILWRTLLSSCSSHN-NLGLAKQVIERIFELDDSHGGDYVILSNLCARA------ 441 (558)
Q Consensus 373 ~~~g--~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~------ 441 (558)
.+.| +++++++.++++ .. ..+...|+.-...+...| .++++++.++++++.+|.+..+|.....++.+.
T Consensus 118 ~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 118 SRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp HTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred HHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 8888 779999999998 22 347888988888888888 899999999999999999999999988888774
Q ss_pred --------CChHHHHHHHHHHHh
Q 036003 442 --------GRWEDVDYLRKLMKD 456 (558)
Q Consensus 442 --------g~~~~A~~~~~~m~~ 456 (558)
+.++++.+.+++...
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~ 220 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFF 220 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHH
T ss_pred cccccccHHHHHHHHHHHHHHHh
Confidence 457888888877765
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.0009 Score=65.41 Aligned_cols=93 Identities=9% Similarity=0.015 Sum_probs=68.7
Q ss_pred ccCChHHHHHHHHHchhhc--CCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCCH-HHHHHHH
Q 036003 338 HTGLVDEGWNYFYSMRDKY--GIVPG----IKHYGCMVDLLGRAGRLDEAYRFIDEL---------PIKSTP-ILWRTLL 401 (558)
Q Consensus 338 ~~g~~~~a~~~~~~~~~~~--~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~~~~-~~~~~l~ 401 (558)
..|++++|..++++..+.. -+.|+ ..+++.|..+|...|++++|+.++++. +..|+. .+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 3567888888877766532 12222 467888888888999999988888775 334443 6789999
Q ss_pred HHHHhcCCHHHHHHHHHHHHc-----cCCCCccc
Q 036003 402 SSCSSHNNLGLAKQVIERIFE-----LDDSHGGD 430 (558)
Q Consensus 402 ~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~ 430 (558)
..|...|++++|+.+++++++ .||+++.+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~ 423 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIAIMEVAHGKDHPYI 423 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHH
T ss_pred HHHHhccCHHHHHHHHHHHHHHHHHHcCCCChHH
Confidence 999999999999999999876 45666543
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=97.04 E-value=0.0028 Score=62.01 Aligned_cols=99 Identities=10% Similarity=-0.015 Sum_probs=72.8
Q ss_pred HHHHHccCChHHHHHHHHHchhhc--CCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhC---------CCCCCH-HH
Q 036003 333 LYACSHTGLVDEGWNYFYSMRDKY--GIVPG----IKHYGCMVDLLGRAGRLDEAYRFIDEL---------PIKSTP-IL 396 (558)
Q Consensus 333 l~~~~~~g~~~~a~~~~~~~~~~~--~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~---------~~~~~~-~~ 396 (558)
+..+.+.|++++|..++++..+.. -+.|+ ..+++.|...|...|++++|+.++++. +..|+. .+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 444556778888888888776531 12222 457788888888899999988888765 333443 67
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHc-----cCCCCcccH
Q 036003 397 WRTLLSSCSSHNNLGLAKQVIERIFE-----LDDSHGGDY 431 (558)
Q Consensus 397 ~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~~ 431 (558)
++.|...|...|++++|+.+++++++ .||+++.+-
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~ 413 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIE 413 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHH
Confidence 88999999999999999999999876 467776543
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0015 Score=49.14 Aligned_cols=65 Identities=9% Similarity=-0.056 Sum_probs=49.7
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCC
Q 036003 361 GIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDD 425 (558)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 425 (558)
+...+..+...|.+.|++++|++.|++. ...| +...|..+..+|...|++++|.+.+++++++.|
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~ 72 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVAR 72 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhh
Confidence 5667777888888888888888888876 2233 456788888888888888888888888887654
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.90 E-value=0.0017 Score=48.58 Aligned_cols=63 Identities=11% Similarity=0.108 Sum_probs=33.5
Q ss_pred HHHHhhcCCHHHHHHHHHhC-CCCC-CHH-HHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccH
Q 036003 369 VDLLGRAGRLDEAYRFIDEL-PIKS-TPI-LWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDY 431 (558)
Q Consensus 369 i~~~~~~g~~~~A~~~~~~~-~~~~-~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 431 (558)
...+.+.|++++|.+.|++. ...| +.. .+..+..++...|++++|.+.|+++++.+|.+..++
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 34455555666665555554 2122 334 555555555555666666666666665555554443
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=96.89 E-value=0.0041 Score=46.38 Aligned_cols=86 Identities=10% Similarity=0.056 Sum_probs=49.8
Q ss_pred HHHHHHccCChHHHHHHHHHchhhcCCCCChh-HHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcC
Q 036003 332 LLYACSHTGLVDEGWNYFYSMRDKYGIVPGIK-HYGCMVDLLGRAGRLDEAYRFIDEL-PIKST-PILWRTLLSSCSSHN 408 (558)
Q Consensus 332 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~-~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g 408 (558)
....+...|++++|...|+++.+. .+.+.. .+..+..+|...|++++|.+.|++. ...|+ ...+.. +
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~ 75 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQT--EPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------K 75 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------H
Confidence 344566677777777777777653 223445 6667777777777777777777765 22232 222211 4
Q ss_pred CHHHHHHHHHHHHccCCCC
Q 036003 409 NLGLAKQVIERIFELDDSH 427 (558)
Q Consensus 409 ~~~~a~~~~~~~~~~~~~~ 427 (558)
.+.++...+++....+|.+
T Consensus 76 ~~~~a~~~~~~~~~~~p~~ 94 (99)
T 2kc7_A 76 MVMDILNFYNKDMYNQLEH 94 (99)
T ss_dssp HHHHHHHHHCCTTHHHHCC
T ss_pred HHHHHHHHHHHHhccCccc
Confidence 4555566665555555443
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=96.75 E-value=0.017 Score=54.19 Aligned_cols=136 Identities=12% Similarity=-0.017 Sum_probs=66.6
Q ss_pred CHHhHHHHHHHHH--HCC---ChHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHc---cC--ChHH---HHHHHHHchhh
Q 036003 290 DTQAWSAMIVAYA--THG---QGHKSILMFEEMMKAQVSPDE-ITFLGLLYACSH---TG--LVDE---GWNYFYSMRDK 355 (558)
Q Consensus 290 ~~~~~~~li~~~~--~~~---~~~~a~~~~~~m~~~g~~p~~-~~~~~ll~~~~~---~g--~~~~---a~~~~~~~~~~ 355 (558)
+..+|...+.+.. ..+ ...+|..+|++..+ ..|+. ..+..+.-++.- .+ .... ....++.....
T Consensus 193 ~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a~ 270 (372)
T 3ly7_A 193 RGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVTL 270 (372)
T ss_dssp SGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHTC
T ss_pred CHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHhc
Confidence 5566666655433 222 24678888888887 45653 444443333320 00 0000 01111111100
Q ss_pred cCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC
Q 036003 356 YGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH 427 (558)
Q Consensus 356 ~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 427 (558)
...+.+..+|.++...+...|++++|...++++ ...|+...|..+...+.-.|++++|.+.+++++.++|..
T Consensus 271 ~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~~ 343 (372)
T 3ly7_A 271 PELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPGA 343 (372)
T ss_dssp GGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCSH
T ss_pred ccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCc
Confidence 022334555555555555556666666666655 233555555555555556666666666666666665543
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=96.65 E-value=0.00014 Score=69.62 Aligned_cols=239 Identities=12% Similarity=0.061 Sum_probs=167.9
Q ss_pred CChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCCCCcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHH
Q 036003 51 NDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLK 130 (558)
Q Consensus 51 ~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~ 130 (558)
..+.+|..|..+..+. +.+.+|+.-|-+. .|+..|..+|....+.|.+++-+..+.-.++. .+ ++..=+.|+-
T Consensus 52 n~p~VWs~LgkAqL~~---~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~-~k-e~~IDteLi~ 124 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQK---GMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKK-AR-ESYVETELIF 124 (624)
T ss_dssp CCCCCSSSHHHHTTTS---SSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT-CC-STTTTHHHHH
T ss_pred CCccHHHHHHHHHHcc---CchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-hc-ccccHHHHHH
Confidence 3456888899999988 8888887766443 57778899999999999999988888655544 22 5556678999
Q ss_pred HHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCC-----------------------
Q 036003 131 ACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE----------------------- 187 (558)
Q Consensus 131 ~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~----------------------- 187 (558)
+|++. +++.+-++++ -.||..-...+.+-|...|.++.|.-+|..+..
T Consensus 125 ayAk~--~rL~elEefl-------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArK 195 (624)
T 3lvg_A 125 ALAKT--NRLAELEEFI-------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARK 195 (624)
T ss_dssp HHHTS--CSSSTTTSTT-------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTT
T ss_pred HHHhh--CcHHHHHHHH-------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99998 7766554443 246666667788888899999998888876641
Q ss_pred -CCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHH
Q 036003 188 -PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTAL 266 (558)
Q Consensus 188 -~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 266 (558)
.++.||-.+-.+|...+.+.-|.-.--.+. +.|| ....++..|...|.+++-..+++.-... -......|+-|
T Consensus 196 Ans~ktWKeV~~ACvd~~EfrLAqicGLniI---vhad--eL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTEL 269 (624)
T 3lvg_A 196 ANSTRTWKEVCFACVDGKEFRLAQMCGLHIV---VHAD--ELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTEL 269 (624)
T ss_dssp CCSSCSHHHHTHHHHHSCTTTTTTHHHHHHH---CCSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHH
T ss_pred cCChhHHHHHHHHHhCchHHHHHHHhcchhc---ccHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHH
Confidence 577889999999999988887754433332 1222 2234555677778888877777765532 13456677777
Q ss_pred HHHHHhcCCHHHHHHHHhccCCC-----------CHHhHHHHHHHHHHCCChHHHHH
Q 036003 267 IDMHAKCGRLDDAVSVFDNMSGK-----------DTQAWSAMIVAYATHGQGHKSIL 312 (558)
Q Consensus 267 ~~~~~~~g~~~~A~~~~~~~~~~-----------~~~~~~~li~~~~~~~~~~~a~~ 312 (558)
.-.|++- +.++..+.++....+ ....|..++-.|.+-.++|.|..
T Consensus 270 aILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 270 AILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 7777764 556666665554432 44568888888888888876654
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.64 E-value=0.16 Score=54.35 Aligned_cols=153 Identities=12% Similarity=0.054 Sum_probs=87.3
Q ss_pred HHhcCCCchHHHH-HHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCC
Q 036003 96 GYSRSKTPIRAIF-LFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSD 174 (558)
Q Consensus 96 ~~~~~g~~~~A~~-~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~ 174 (558)
.....+++++|.+ ++..+ |+......++..+.+. |..+.|.++.+.- . .-.......|+
T Consensus 608 ~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~--~~~~~a~~~~~~~-------~-----~~f~~~l~~~~ 667 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQ--EYYEEALNISPDQ-------D-----QKFELALKVGQ 667 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHT--TCHHHHHHHCCCH-------H-----HHHHHHHHHTC
T ss_pred HHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhC--CChHHheecCCCc-------c-----hheehhhhcCC
Confidence 3345667777665 43111 1012225555555555 7777776655311 1 11234456788
Q ss_pred hHHHHHHHhccCCCCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 036003 175 VEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY 254 (558)
Q Consensus 175 ~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 254 (558)
++.|.++.+.+. +...|..+...+.+.|+++.|.+.|.++.. |..+...+...|+.+...++.+.....
T Consensus 668 ~~~A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~ 736 (814)
T 3mkq_A 668 LTLARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT 736 (814)
T ss_dssp HHHHHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc
Confidence 888888877664 556788888888888888888888877643 334444455566666655555444443
Q ss_pred CCCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 036003 255 GLDKYVKVNTALIDMHAKCGRLDDAVSVFDN 285 (558)
Q Consensus 255 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 285 (558)
|. ++.-..+|.+.|++++|.++|.+
T Consensus 737 ~~------~~~A~~~~~~~g~~~~a~~~~~~ 761 (814)
T 3mkq_A 737 GK------FNLAFNAYWIAGDIQGAKDLLIK 761 (814)
T ss_dssp TC------HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred Cc------hHHHHHHHHHcCCHHHHHHHHHH
Confidence 31 12233445556676666665443
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.62 E-value=0.044 Score=58.76 Aligned_cols=153 Identities=12% Similarity=0.054 Sum_probs=85.3
Q ss_pred HHHCCCccHHHH-HHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 036003 200 YARSSRPNEALS-LFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDD 278 (558)
Q Consensus 200 ~~~~g~~~~A~~-~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 278 (558)
....+++++|.+ ++..+ |+......++..+.+.|..+.|.++.+.-. .-.......|++++
T Consensus 609 ~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~~~------------~~f~~~l~~~~~~~ 670 (814)
T 3mkq_A 609 LTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPDQD------------QKFELALKVGQLTL 670 (814)
T ss_dssp HHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCCHH------------HHHHHHHHHTCHHH
T ss_pred HHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCCcc------------hheehhhhcCCHHH
Confidence 345566666655 33111 112223555666666677777665442111 11234556788888
Q ss_pred HHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCC
Q 036003 279 AVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGI 358 (558)
Q Consensus 279 A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 358 (558)
|.++.+.+. +...|..+...+.+.++++.|.+.|.++.. |..+...+...|+.+...++-+..... |
T Consensus 671 A~~~~~~~~--~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~-~- 737 (814)
T 3mkq_A 671 ARDLLTDES--AEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETT-G- 737 (814)
T ss_dssp HHHHHTTCC--CHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHT-T-
T ss_pred HHHHHHhhC--cHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHc-C-
Confidence 888876663 456788888888888888888888887643 334444444456655544444333321 1
Q ss_pred CCChhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 036003 359 VPGIKHYGCMVDLLGRAGRLDEAYRFIDEL 388 (558)
Q Consensus 359 ~~~~~~~~~li~~~~~~g~~~~A~~~~~~~ 388 (558)
-++.-..+|.+.|++++|.+++.++
T Consensus 738 -----~~~~A~~~~~~~g~~~~a~~~~~~~ 762 (814)
T 3mkq_A 738 -----KFNLAFNAYWIAGDIQGAKDLLIKS 762 (814)
T ss_dssp -----CHHHHHHHHHHHTCHHHHHHHHHHT
T ss_pred -----chHHHHHHHHHcCCHHHHHHHHHHc
Confidence 1233334455566666666655554
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=96.60 E-value=0.17 Score=39.20 Aligned_cols=140 Identities=9% Similarity=0.016 Sum_probs=95.8
Q ss_pred HHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHH
Q 036003 302 ATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEA 381 (558)
Q Consensus 302 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A 381 (558)
.-.|..++..++..+.... .+..-|+.+|--....-+-+-..++++.+-+-+.+. .+|++...
T Consensus 18 ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis--------------~C~NlKrV 80 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLD--------------KCQNLKSV 80 (172)
T ss_dssp HHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGG--------------GCSCTHHH
T ss_pred HHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcH--------------hhhcHHHH
Confidence 3457777777777777653 255666666666666666666667777665432222 34444444
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 036003 382 YRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVL 460 (558)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 460 (558)
...+-.+. .+.......++.....|+-+.-.+++..++...++++....-+..+|.+.|+..+|.+++.+.-++|++
T Consensus 81 i~C~~~~n--~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 81 VECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhc--chHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 44444443 244455666777888888888888888877777777888888899999999999999999988888875
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=96.38 E-value=0.029 Score=41.25 Aligned_cols=78 Identities=9% Similarity=0.033 Sum_probs=57.6
Q ss_pred CCChhHHHHHHHHHhhcCC---HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHh
Q 036003 359 VPGIKHYGCMVDLLGRAGR---LDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVI 433 (558)
Q Consensus 359 ~~~~~~~~~li~~~~~~g~---~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 433 (558)
+.+...+..+..++...++ .++|..++++. ...| ++.....+...+...|++++|+..|+++++.+|+ ......
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~-~~~~~~ 81 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP-NLDRVT 81 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT-TCCHHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-CccHHH
Confidence 4566777777777765444 68898888887 3334 5677888888899999999999999999999988 334444
Q ss_pred HHHH
Q 036003 434 LSNL 437 (558)
Q Consensus 434 l~~~ 437 (558)
+...
T Consensus 82 i~~~ 85 (93)
T 3bee_A 82 IIES 85 (93)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 4433
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=96.28 E-value=0.013 Score=52.57 Aligned_cols=86 Identities=10% Similarity=0.129 Sum_probs=69.5
Q ss_pred HHHHHHHHHhC-CCCCC---HHHHHHHHHHHHh-----cCCHHHHHHHHHHHHccCCCC-cccHHhHHHHHHhc-CChHH
Q 036003 378 LDEAYRFIDEL-PIKST---PILWRTLLSSCSS-----HNNLGLAKQVIERIFELDDSH-GGDYVILSNLCARA-GRWED 446 (558)
Q Consensus 378 ~~~A~~~~~~~-~~~~~---~~~~~~l~~~~~~-----~g~~~~a~~~~~~~~~~~~~~-~~~~~~l~~~~~~~-g~~~~ 446 (558)
...|...+++. ...|+ ...|..+...|.. .|+.++|.+.|+++++++|.. ..++..+++.+++. |+.++
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 35666666665 44565 5678888888888 499999999999999999975 89999999999885 99999
Q ss_pred HHHHHHHHHhCCCccCC
Q 036003 447 VDYLRKLMKDRGVLKVP 463 (558)
Q Consensus 447 A~~~~~~m~~~g~~~~~ 463 (558)
|.+.+++........+|
T Consensus 259 a~~~L~kAL~a~p~~~P 275 (301)
T 3u64_A 259 FDEALDRALAIDPESVP 275 (301)
T ss_dssp HHHHHHHHHHCCGGGCS
T ss_pred HHHHHHHHHcCCCCCCC
Confidence 99999999887666334
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=96.23 E-value=0.02 Score=43.17 Aligned_cols=73 Identities=10% Similarity=0.024 Sum_probs=53.2
Q ss_pred ChhHHHHHHHHHhhcCCHHHHHHHHHhC-----C----CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccH
Q 036003 361 GIKHYGCMVDLLGRAGRLDEAYRFIDEL-----P----IKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDY 431 (558)
Q Consensus 361 ~~~~~~~li~~~~~~g~~~~A~~~~~~~-----~----~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 431 (558)
+..-+-.|...+.+.|++..|...|+.. + ..+...++..+..++.+.|+++.|...++++++..|.+..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 3444556667777777777777777664 1 123457788899999999999999999999999999886554
Q ss_pred Hh
Q 036003 432 VI 433 (558)
Q Consensus 432 ~~ 433 (558)
..
T Consensus 84 ~n 85 (104)
T 2v5f_A 84 GN 85 (104)
T ss_dssp HH
T ss_pred hh
Confidence 43
|
| >1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A* | Back alignment and structure |
|---|
Probab=96.15 E-value=1.4 Score=44.94 Aligned_cols=114 Identities=11% Similarity=0.064 Sum_probs=69.2
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHH----HHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHH
Q 036003 305 GQGHKSILMFEEMMKAQVSPDEIT----FLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDE 380 (558)
Q Consensus 305 ~~~~~a~~~~~~m~~~g~~p~~~~----~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 380 (558)
.+.+.|..+|....+.+ ..+... ...+.......+...++...+...... ..+.....-.+....+.|+++.
T Consensus 228 ~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~ 303 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRG 303 (618)
T ss_dssp HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHH
T ss_pred cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHH
Confidence 37788988888876543 223322 222232333445345566666654432 2333334445555567799999
Q ss_pred HHHHHHhCCCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 036003 381 AYRFIDELPIKS--TPILWRTLLSSCSSHNNLGLAKQVIERIFE 422 (558)
Q Consensus 381 A~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 422 (558)
|...|+.|+..+ ...-..=+..++...|+.++|..+|+++.+
T Consensus 304 a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 999999985332 233233355677788999999999999875
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=96.13 E-value=0.038 Score=42.76 Aligned_cols=65 Identities=6% Similarity=-0.115 Sum_probs=30.7
Q ss_pred CCHHHHHHHHHHHHhcCCHHH---HHHHHHHHHccC-C-CCcccHHhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 392 STPILWRTLLSSCSSHNNLGL---AKQVIERIFELD-D-SHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 392 ~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~-~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
++..+--.+..++.+..+... ++.+++.....+ | ........|+.++.+.|+|++|.+.++.+.+
T Consensus 33 ~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 33 VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344444444444444443333 555555554443 2 1223444455555555555555555555544
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.96 E-value=0.023 Score=45.78 Aligned_cols=85 Identities=12% Similarity=0.011 Sum_probs=62.6
Q ss_pred hHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcC---CHHHHHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCCHHHHH
Q 036003 342 VDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAG---RLDEAYRFIDEL-PIK-S--TPILWRTLLSSCSSHNNLGLAK 414 (558)
Q Consensus 342 ~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g---~~~~A~~~~~~~-~~~-~--~~~~~~~l~~~~~~~g~~~~a~ 414 (558)
...+.+.|.+.... + .++..+...+..++++.+ ++++++.+|++. ... | +...+..|.-++.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHH
Confidence 44555566655542 3 367777777888888877 566888888776 222 4 3456777888899999999999
Q ss_pred HHHHHHHccCCCCc
Q 036003 415 QVIERIFELDDSHG 428 (558)
Q Consensus 415 ~~~~~~~~~~~~~~ 428 (558)
+.++.+++.+|.+.
T Consensus 92 ~y~~~lL~ieP~n~ 105 (152)
T 1pc2_A 92 KYVRGLLQTEPQNN 105 (152)
T ss_dssp HHHHHHHHHCTTCH
T ss_pred HHHHHHHhcCCCCH
Confidence 99999999999764
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.93 E-value=0.27 Score=40.59 Aligned_cols=129 Identities=16% Similarity=0.200 Sum_probs=76.8
Q ss_pred HHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHH
Q 036003 268 DMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWN 347 (558)
Q Consensus 268 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~ 347 (558)
......|+++.|.++.+.+ .+...|..|.......|+++-|.+.|.+... |..+.-.|...|+.+.-..
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3455677777777776665 3566788888888888888888877777543 3344445555666665554
Q ss_pred HHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036003 348 YFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERI 420 (558)
Q Consensus 348 ~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 420 (558)
+-+....+ | -++.-...+.-.|+++++.++|.+.+.-|... -.....|-.+.|.++.+.+
T Consensus 82 la~iA~~~-g------~~n~af~~~l~lGdv~~~i~lL~~~~r~~eA~------~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 82 MQNIAQTR-E------DFGSMLLNTFYNNSTKERSSIFAEGGSLPLAY------AVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHT-T------CHHHHHHHHHHHTCHHHHHHHHHHTTCHHHHH------HHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHC-c------cHHHHHHHHHHcCCHHHHHHHHHHCCChHHHH------HHHHHcCcHHHHHHHHHHh
Confidence 43333322 1 24445555666788888888877765222111 1112355666666666554
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=95.79 E-value=0.14 Score=47.98 Aligned_cols=133 Identities=5% Similarity=-0.065 Sum_probs=60.4
Q ss_pred CCCcccHHHHHHHHHhc---CcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh----CCC-------hHHHHHHHhc
Q 036003 119 LPDDYSFPSLLKACACV---GAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAE----CSD-------VEAARRIFEN 184 (558)
Q Consensus 119 ~p~~~~~~~ll~~~~~~---~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~----~g~-------~~~A~~~~~~ 184 (558)
+.+...|...+++.... ...+..+|..+|+++++.. +-....+..+..+|.- .+. +..+.+....
T Consensus 191 p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lD-P~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 191 PHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSS-PEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp CSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 34556666666554322 1144567777777777753 2233444433333320 000 0011111111
Q ss_pred cC--CCCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHh
Q 036003 185 IS--EPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKY 254 (558)
Q Consensus 185 ~~--~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~ 254 (558)
+. ..+..+|..+...+...|++++|...+++....+ |+...|..+...+.-.|++++|...+++....
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL 339 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL 339 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 11 1333444444444444455555555555555543 44444444445555555555555555555544
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=95.60 E-value=0.69 Score=38.17 Aligned_cols=102 Identities=10% Similarity=0.093 Sum_probs=58.8
Q ss_pred HHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHH
Q 036003 167 NLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKW 246 (558)
Q Consensus 167 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~ 246 (558)
.....+|+++.|.++.+.+ .+...|..|.....+.|+++-|.+.|.+... +..+.-.|.-.|+.++-.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~k 81 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSK 81 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHH
T ss_pred HHHHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHH
Confidence 3445677777777776665 3556677777777777777777777766542 2334444445566655554
Q ss_pred HHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhc
Q 036003 247 IHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDN 285 (558)
Q Consensus 247 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 285 (558)
+-+.....| . ++.-...+.-.|+++++.++|.+
T Consensus 82 la~iA~~~g-~-----~n~af~~~l~lGdv~~~i~lL~~ 114 (177)
T 3mkq_B 82 MQNIAQTRE-D-----FGSMLLNTFYNNSTKERSSIFAE 114 (177)
T ss_dssp HHHHHHHTT-C-----HHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHCc-c-----HHHHHHHHHHcCCHHHHHHHHHH
Confidence 444444333 1 12333344455666666665544
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=95.33 E-value=0.056 Score=40.67 Aligned_cols=65 Identities=12% Similarity=-0.050 Sum_probs=54.9
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccC-------CCCcccHHhHHHHHHhcCChHHHHHHHHHHHhC
Q 036003 393 TPILWRTLLSSCSSHNNLGLAKQVIERIFELD-------DSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 393 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
+..-+..|...+...|+++.|...|+++++.. +.....+..|+.+|.+.|++++|..++++..+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 44556678899999999999999999998753 334567899999999999999999999998763
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=95.23 E-value=0.61 Score=36.71 Aligned_cols=66 Identities=11% Similarity=0.081 Sum_probs=45.3
Q ss_pred CCCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHccCCC-CcccHHhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 391 KSTPILWRTLLSSCSSHNN---LGLAKQVIERIFELDDS-HGGDYVILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 391 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
.|+..+--.+..++.+..+ ..+++.+++.....+|. .......|..++.+.|++++|.++.+.+.+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 4566565556666666654 45677777777776653 334566677788888888888888887776
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.16 E-value=0.84 Score=35.44 Aligned_cols=84 Identities=8% Similarity=0.016 Sum_probs=54.5
Q ss_pred CCChHHHHHHHhccCCCCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHH
Q 036003 172 CSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYI 251 (558)
Q Consensus 172 ~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~ 251 (558)
+|++......+-.+. .+....+.-+..+..+|+-++-.+++..+... .+|++.....+..+|.+.|+..++..++.++
T Consensus 74 C~NlKrVi~C~~~~n-~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~A 151 (172)
T 1wy6_A 74 CQNLKSVVECGVINN-TLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEA 151 (172)
T ss_dssp CSCTHHHHHHHHHTT-CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred hhcHHHHHHHHHHhc-chHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHH
Confidence 334444443333332 23334455667777788888888888775442 4677788888888888888888888888888
Q ss_pred HHhCCC
Q 036003 252 KKYGLD 257 (558)
Q Consensus 252 ~~~~~~ 257 (558)
.+.|++
T Consensus 152 C~kG~k 157 (172)
T 1wy6_A 152 CKKGEK 157 (172)
T ss_dssp HHTTCH
T ss_pred HHhhhH
Confidence 777743
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=94.62 E-value=2 Score=38.61 Aligned_cols=114 Identities=13% Similarity=0.066 Sum_probs=56.4
Q ss_pred hcCCHHHHHHHHhccCCCCHH--hHHHHHHH-HHHC--CC------hHHHHHHHHHHHHCCCCCC---HHHHHHHHHHHH
Q 036003 272 KCGRLDDAVSVFDNMSGKDTQ--AWSAMIVA-YATH--GQ------GHKSILMFEEMMKAQVSPD---EITFLGLLYACS 337 (558)
Q Consensus 272 ~~g~~~~A~~~~~~~~~~~~~--~~~~li~~-~~~~--~~------~~~a~~~~~~m~~~g~~p~---~~~~~~ll~~~~ 337 (558)
+.|+..+-.+.+.+....++. .|..++.+ +... |+ ...|...+++..+ +.|+ ...|..+...|.
T Consensus 133 ~~~~~~~~~~~l~~~~~~dve~L~W~ai~~ss~a~~~~gg~~Al~~l~~A~a~lerAle--LDP~~~~GsA~~~LG~lY~ 210 (301)
T 3u64_A 133 FSGDEQRLHKVLSRCTRVDVGTLYWVGTGYVAAFALTPLGSALPDTVHAAVMMLERACD--LWPSYQEGAVWNVLTKFYA 210 (301)
T ss_dssp TSSCHHHHHHHHTTCCGGGHHHHHHHHHHHHHHHTTSCTTSCCHHHHHHHHHHHHHHHH--HCTTHHHHHHHHHHHHHHH
T ss_pred HhcchhhHHHHHHHcCccccHHHHHHHHHHHHHHhcCCCChHHHHhHHHHHHHHHHHHH--hCCCcccCHHHHHHHHHHH
Confidence 334444555555555544433 35444432 2222 22 3455555555555 4454 245555555555
Q ss_pred cc-----CChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhc-CCHHHHHHHHHhC
Q 036003 338 HT-----GLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRA-GRLDEAYRFIDEL 388 (558)
Q Consensus 338 ~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~-g~~~~A~~~~~~~ 388 (558)
.. |+.++|.+.|++..+- +-.-+..++....+.+++. |+.++|.+.+++.
T Consensus 211 ~vPp~~gGd~ekA~~~ferAL~L-nP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kA 266 (301)
T 3u64_A 211 AAPESFGGGMEKAHTAFEHLTRY-CSAHDPDHHITYADALCIPLNNRAGFDEALDRA 266 (301)
T ss_dssp HSCTTTTCCHHHHHHHHHHHHHH-CCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHH
T ss_pred hCCCccCCCHHHHHHHHHHHHHh-CCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 52 6666666666666542 1111244555555555553 5555555555554
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=94.28 E-value=3.1 Score=38.01 Aligned_cols=170 Identities=9% Similarity=0.012 Sum_probs=105.0
Q ss_pred HHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHHCCCccHHHHH----HHHHHHCCCCCCHHHHHHHHHHH
Q 036003 160 YVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSL----FRELQERNLKPTDVTMLSALSSC 235 (558)
Q Consensus 160 ~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~----~~~m~~~~~~p~~~~~~~ll~~~ 235 (558)
..|.++..-|.+.+++++|.+++.. -...+.+.|+...|-++ ++...+.+++++......++..+
T Consensus 34 Q~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~ 102 (312)
T 2wpv_A 34 QTLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLI 102 (312)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3556677778899999999998755 34556777887766554 55566778899988888888777
Q ss_pred hccCChH-HHHHHHHHHH----HhCC--CCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHC---C
Q 036003 236 ALLGSLD-LGKWIHEYIK----KYGL--DKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATH---G 305 (558)
Q Consensus 236 ~~~~~~~-~a~~~~~~~~----~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~---~ 305 (558)
.....-+ .-.++.+++. +.|- .-++.....+...|.+.|++.+|+..|-.-...+...+..++.-+... |
T Consensus 103 ~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~~~~ 182 (312)
T 2wpv_A 103 AELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQVDDI 182 (312)
T ss_dssp TTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHTTCC
T ss_pred HHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhcCCC
Confidence 6543211 1233333443 3322 235677788889999999999998877633323455554444433333 3
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhh
Q 036003 306 QGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDK 355 (558)
Q Consensus 306 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~ 355 (558)
...++ +...-..++ .|...|+...|..+|....++
T Consensus 183 ~~~e~--------------dlf~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 183 EDSTV--------------AEFFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp CHHHH--------------HHHHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred CcchH--------------HHHHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 32221 112222222 344568888888888877653
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=94.26 E-value=0.34 Score=37.43 Aligned_cols=89 Identities=12% Similarity=-0.020 Sum_probs=62.7
Q ss_pred CChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHH---HHHHHHhC-CCC-C--CHHHHHHHHHHHHhcCCHHH
Q 036003 340 GLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDE---AYRFIDEL-PIK-S--TPILWRTLLSSCSSHNNLGL 412 (558)
Q Consensus 340 g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~---A~~~~~~~-~~~-~--~~~~~~~l~~~~~~~g~~~~ 412 (558)
..+..+.+.|.+.... +. ++..+--.+..++.+..+..+ ++.+++++ ... | .......|.-++.+.|++++
T Consensus 15 ~~l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~ 92 (126)
T 1nzn_A 15 EDLLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 92 (126)
T ss_dssp HHHHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHH
Confidence 3344555556555543 33 667777777888888777666 77888876 322 3 22455667788999999999
Q ss_pred HHHHHHHHHccCCCCccc
Q 036003 413 AKQVIERIFELDDSHGGD 430 (558)
Q Consensus 413 a~~~~~~~~~~~~~~~~~ 430 (558)
|.+.++.+++..|.+..+
T Consensus 93 A~~~~~~lL~~eP~n~QA 110 (126)
T 1nzn_A 93 ALKYVRGLLQTEPQNNQA 110 (126)
T ss_dssp HHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHhCCCCHHH
Confidence 999999999999987543
|
| >3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A | Back alignment and structure |
|---|
Probab=93.81 E-value=0.0048 Score=59.25 Aligned_cols=211 Identities=14% Similarity=0.059 Sum_probs=108.0
Q ss_pred HHHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhcc
Q 036003 159 LYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALL 238 (558)
Q Consensus 159 ~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 238 (558)
+.+|..|..++.+.+++.+|++-|=+ ..|...|..+|....+.|.+++-+..+...++..-.| ..=+.|+-+|++.
T Consensus 54 p~VWs~LgkAqL~~~~v~eAIdsyIk--A~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayAk~ 129 (624)
T 3lvg_A 54 PAVWSQLAKAQLQKGMVKEAIDSYIK--ADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALAKT 129 (624)
T ss_dssp CCCSSSHHHHTTTSSSCTTTTTSSCC--CSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHHTS
T ss_pred ccHHHHHHHHHHccCchHHHHHHHHh--CCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHHhh
Confidence 34555566666666666655544422 2455556666666666666666666665444432222 2224556666666
Q ss_pred CChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC------------------------CCCHHhH
Q 036003 239 GSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS------------------------GKDTQAW 294 (558)
Q Consensus 239 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~------------------------~~~~~~~ 294 (558)
+++.+-++++. .||..-...+.+-+...|.++.|.-+|..+. ..++.+|
T Consensus 130 ~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktW 202 (624)
T 3lvg_A 130 NRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTW 202 (624)
T ss_dssp CSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSH
T ss_pred CcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHH
Confidence 66544333221 3444444455566666666666666555542 1155677
Q ss_pred HHHHHHHHHCCCh------------------------------HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHH
Q 036003 295 SAMIVAYATHGQG------------------------------HKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDE 344 (558)
Q Consensus 295 ~~li~~~~~~~~~------------------------------~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~ 344 (558)
-.+-.+|...+.+ ++-+.+++.-... -+.-.-.|+-|.-.|++- ++++
T Consensus 203 KeV~~ACvd~~EfrLAqicGLniIvhadeL~elv~~YE~~G~f~ELIsLlEaglgl-ErAHmGmFTELaILYsKY-~PeK 280 (624)
T 3lvg_A 203 KEVCFACVDGKEFRLAQMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKF-KPQK 280 (624)
T ss_dssp HHHTHHHHHSCTTTTTTHHHHHHHCCSSCCSGGGSSSSTTCCCTTSTTTHHHHTTS-TTCCHHHHHHHHHHHHSS-CTTH
T ss_pred HHHHHHHhCchHHHHHHHhcchhcccHHHHHHHHHHHHhCCCHHHHHHHHHHHhCC-CchhHHHHHHHHHHHHhc-CHHH
Confidence 7777777665544 4444444433311 122334555555555544 3444
Q ss_pred HHHHHHHchhhcCCCC------ChhHHHHHHHHHhhcCCHHHHH
Q 036003 345 GWNYFYSMRDKYGIVP------GIKHYGCMVDLLGRAGRLDEAY 382 (558)
Q Consensus 345 a~~~~~~~~~~~~~~~------~~~~~~~li~~~~~~g~~~~A~ 382 (558)
..+.++....+-+++. ....|.-++-.|.+-..++.|.
T Consensus 281 lmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ 324 (624)
T 3lvg_A 281 MREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 324 (624)
T ss_dssp HHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHH
Confidence 4454444443222221 2345566666666666666553
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=93.73 E-value=0.42 Score=49.64 Aligned_cols=54 Identities=15% Similarity=0.062 Sum_probs=49.8
Q ss_pred HHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHH
Q 036003 402 SSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMK 455 (558)
Q Consensus 402 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 455 (558)
..|...|+++.|+++.+++...-|.+..+|..|+.+|...|+|+.|+-.+..+.
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 446678999999999999999999999999999999999999999999998774
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=92.92 E-value=0.52 Score=36.55 Aligned_cols=65 Identities=11% Similarity=0.081 Sum_probs=38.4
Q ss_pred CCHHHHHHHHHHHHhcCC---HHHHHHHHHHHHccCCC-CcccHHhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 392 STPILWRTLLSSCSSHNN---LGLAKQVIERIFELDDS-HGGDYVILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 392 ~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
|+..+--.+..++.+..+ ..+++.+++...+.+|. ....+..|+.++.+.|++++|.++.+.+.+
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 444444445555555543 34566666666665552 234555666677777777777777776655
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=92.43 E-value=11 Score=40.29 Aligned_cols=91 Identities=12% Similarity=0.039 Sum_probs=50.3
Q ss_pred hHHHHHHHHhhcCCCCCCHHHHHHHHccCCCCC--------------cccHHHHHHHH----hcCCCch----HHHHHHH
Q 036003 54 NVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPD--------------IVLFNTMARGY----SRSKTPI----RAIFLFV 111 (558)
Q Consensus 54 ~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~--------------~~~~~~li~~~----~~~g~~~----~A~~~~~ 111 (558)
.....++..|.++ +...+|..+.-+..+-| ...|..++..+ ...-..+ +.+++.-
T Consensus 146 ~Lv~~iv~~cl~h---nae~~AvdLalE~erLD~Le~~vd~~~~~~~~~n~~rvclYlls~v~~lv~p~~fr~~vLr~l~ 222 (963)
T 4ady_A 146 SIFERMIEKCLKA---SELKLALGIALEGYRLDIIESALKSKLDQDSTSENVKIINYLLTLAITTVTNSKFRSSILRKSF 222 (963)
T ss_dssp HHHHHHHHHHHHH---TCHHHHHHHHHHTTCHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC---CCHHHHHHHHHHHhhHHHHHHHHHhhccccccccHHHHHHHHHHHhhccCCChHHHHHHHHHHH
Confidence 3556677777777 78888777776665411 13343333322 1112221 3333322
Q ss_pred HhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHH
Q 036003 112 ELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIK 152 (558)
Q Consensus 112 ~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~ 152 (558)
++... . +..-|..++.+..+. ++.+.+.++|..+.+
T Consensus 223 ~Iy~k-~--~~~dy~~a~~~ai~L--nD~~li~~if~~l~~ 258 (963)
T 4ady_A 223 DFLMN-M--PNCDYLTLNKVVVNL--NDAGLALQLFKKLKE 258 (963)
T ss_dssp HHHHH-S--SSCCHHHHHHHHHHH--TCHHHHHHHHHHHHT
T ss_pred HHHHh-C--CchhHHHHHHHHHHc--CCHHHHHHHHHHHHh
Confidence 22211 1 122466777777778 889999999988763
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=92.40 E-value=0.24 Score=47.58 Aligned_cols=70 Identities=11% Similarity=-0.048 Sum_probs=58.8
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHH-----hCCCccCCccc
Q 036003 397 WRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMK-----DRGVLKVPGCS 466 (558)
Q Consensus 397 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~g~~~~~~~~ 466 (558)
...++.++...|+++++...++.++..+|-+...|..++.+|.+.|+..+|.+.|++.. +.|+.|.+.+.
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 34566778888999999999999999999998899999999999999999999988764 46888877543
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=91.87 E-value=0.84 Score=36.28 Aligned_cols=54 Identities=9% Similarity=0.016 Sum_probs=35.2
Q ss_pred CCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhCCCcc
Q 036003 408 NNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVLK 461 (558)
Q Consensus 408 g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~~ 461 (558)
++.++|.++|+.+++....=+..|...+..-.++|+...|.+++.+....+.+|
T Consensus 74 ~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred cCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 677777777777766533323445555555667777777777777777666554
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=91.80 E-value=6.1 Score=38.49 Aligned_cols=184 Identities=11% Similarity=0.035 Sum_probs=116.1
Q ss_pred CCccHHHHHHHHHHHC-----CCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHH----HHHhcC
Q 036003 204 SRPNEALSLFRELQER-----NLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALID----MHAKCG 274 (558)
Q Consensus 204 g~~~~A~~~~~~m~~~-----~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~g 274 (558)
|+++.|++.+..+.+. +..........++..|...++++.....+..+.+..-..... ...++. ......
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a-i~~~V~~~~~~l~~~~ 108 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS-IQYMIQKVMEYLKSSK 108 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH-HHHHHHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH-HHHHHHHHHHHHhcCC
Confidence 6788898888766542 344556778889999999999999888777665432222211 222332 222233
Q ss_pred CH--HHHHHHHhccCCC----------CHHhHHHHHHHHHHCCChHHHHHHHHHHHH--CCCCCC---HHHHHHHHHHHH
Q 036003 275 RL--DDAVSVFDNMSGK----------DTQAWSAMIVAYATHGQGHKSILMFEEMMK--AQVSPD---EITFLGLLYACS 337 (558)
Q Consensus 275 ~~--~~A~~~~~~~~~~----------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~--~g~~p~---~~~~~~ll~~~~ 337 (558)
.. +.-..+.+.+... .......|...|...|++.+|..++.++.. .|.... ...+...++.|.
T Consensus 109 ~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l 188 (445)
T 4b4t_P 109 SLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSI 188 (445)
T ss_dssp TTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHH
Confidence 22 2233333333321 112345677888899999999999998864 232222 145666777888
Q ss_pred ccCChHHHHHHHHHchhhc-CCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhC
Q 036003 338 HTGLVDEGWNYFYSMRDKY-GIVPG----IKHYGCMVDLLGRAGRLDEAYRFIDEL 388 (558)
Q Consensus 338 ~~g~~~~a~~~~~~~~~~~-~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~ 388 (558)
..+++.+|..++.++.... ...++ ...+...+..+...+++.+|.+.|.+.
T Consensus 189 ~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~ 244 (445)
T 4b4t_P 189 LKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEI 244 (445)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 8999999999988875321 12222 245667777888888888888876665
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=90.93 E-value=1.2 Score=35.44 Aligned_cols=60 Identities=15% Similarity=0.091 Sum_probs=40.9
Q ss_pred cCCHHHHHHHHHhC-C-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhH
Q 036003 375 AGRLDEAYRFIDEL-P-IKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVIL 434 (558)
Q Consensus 375 ~g~~~~A~~~~~~~-~-~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 434 (558)
.++.++|.++|+.+ . .+.-...|-....--.++|+.+.|.+++.+++.+.|.....+...
T Consensus 73 i~D~d~aR~vy~~a~~~hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~le~a 134 (161)
T 4h7y_A 73 IQEPDDARDYFQMARANCKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEMLEIA 134 (161)
T ss_dssp HHCGGGCHHHHHHHHHHCTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHHHHHH
Confidence 36667777777665 1 111266777777777888999999999999998887654444433
|
| >3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=90.88 E-value=5.6 Score=33.41 Aligned_cols=104 Identities=15% Similarity=0.241 Sum_probs=74.5
Q ss_pred HHHHHHHhC-CCCCCHH---HHHHHHHHHHhcCCHHHHHHHHHHHHcc--CCCCcccHHhHHHHHHhcCChHHHHHHHHH
Q 036003 380 EAYRFIDEL-PIKSTPI---LWRTLLSSCSSHNNLGLAKQVIERIFEL--DDSHGGDYVILSNLCARAGRWEDVDYLRKL 453 (558)
Q Consensus 380 ~A~~~~~~~-~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 453 (558)
++.+.|... ..+.|+. .|-.++..+ ..++..++..+|..|... |...+..|...+..+...|++++|.++|+.
T Consensus 62 rc~~~F~~~~rYkND~RYLklWl~Ya~~~-~~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~ 140 (202)
T 3esl_A 62 RCLIYIQDMETYRNDPRFLKIWIWYINLF-LSNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLEL 140 (202)
T ss_dssp HHHHHHTTCGGGTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHhcccccccCCHHHHHHHHHHHHhh-cccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 344444444 3345654 343333333 245577999999998765 466677899999999999999999999999
Q ss_pred HHhCCCccCCcccEEEECCEEEEEeeCCCCCCChHHHHHHHHHHHHHHHHcCcccC
Q 036003 454 MKDRGVLKVPGCSSIEVNNVVREFFSGDGVHSYSTDLQKALDELVKELKMVGYVPD 509 (558)
Q Consensus 454 m~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~m~~~g~~pd 509 (558)
-.+.+-.| .+...+...++..+|.+.+++-|
T Consensus 141 GI~~~A~P-------------------------~~rL~~~~~~F~~R~~~~~~~~~ 171 (202)
T 3esl_A 141 GAENNCRP-------------------------YNRLLRSLSNYEDRLREMNIVEN 171 (202)
T ss_dssp HHHTTCBS-------------------------HHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HHHcCCcc-------------------------HHHHHHHHHHHHHHHHhcCCCCC
Confidence 99888877 24566677788889988888444
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=90.03 E-value=8.7 Score=40.92 Aligned_cols=13 Identities=23% Similarity=0.358 Sum_probs=7.5
Q ss_pred CCHHHHHHHHccC
Q 036003 70 SSMEHAHLLFDRI 82 (558)
Q Consensus 70 ~~~~~A~~~~~~~ 82 (558)
++.+.+.++|...
T Consensus 244 nD~~li~~if~~l 256 (963)
T 4ady_A 244 NDAGLALQLFKKL 256 (963)
T ss_dssp TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHH
Confidence 5556666666553
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=89.82 E-value=4.3 Score=45.11 Aligned_cols=123 Identities=6% Similarity=-0.117 Sum_probs=83.6
Q ss_pred HHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCC-----------------
Q 036003 331 GLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL--PIK----------------- 391 (558)
Q Consensus 331 ~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~----------------- 391 (558)
.++..+...+..+.+.++..-.. .+....-.+..+|...|++++|.+.|++. +..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~------~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLN------SDPIAVYLKALIYLKSKEAVKAVRCFKTTSLVLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSC------CCHHHHHHHHHHHHHTTCHHHHHHHHHTCCCSCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcc------CCcHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccchhhhhhcccccccc
Confidence 45556666677766665443332 23333345667788888888888888876 110
Q ss_pred ------CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcc-----cHHhHHHHHHhcCChHHHHHHHHHHHhCCC
Q 036003 392 ------STPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGG-----DYVILSNLCARAGRWEDVDYLRKLMKDRGV 459 (558)
Q Consensus 392 ------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~ 459 (558)
.-..-|.-++..+.+.+.++.+.++.+.+++..+.+.. .|..+...+...|++++|...+-.+.+...
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~ 969 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL 969 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH
Confidence 01234566777888899999999999988876533222 577788889999999999998887765444
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=88.80 E-value=14 Score=33.94 Aligned_cols=167 Identities=13% Similarity=0.062 Sum_probs=99.5
Q ss_pred HHHHHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHH----HHHHHHHCCCCCCHHHHHHHHHHHHcc
Q 036003 264 TALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSIL----MFEEMMKAQVSPDEITFLGLLYACSHT 339 (558)
Q Consensus 264 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~----~~~~m~~~g~~p~~~~~~~ll~~~~~~ 339 (558)
.++..=|.+.+++++|++++.. -...+.+.|+..-|-+ +++-..+.++++|......|+..+...
T Consensus 39 RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~ 107 (336)
T 3lpz_A 39 RLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLF 107 (336)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhC
Confidence 4455667888888888887443 2344556666554444 345556677888888777777776654
Q ss_pred CChH-HHHHHHHHchh---hcC--CCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 036003 340 GLVD-EGWNYFYSMRD---KYG--IVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLGLA 413 (558)
Q Consensus 340 g~~~-~a~~~~~~~~~---~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 413 (558)
..-+ .=..+.+++.+ +.| -.-|......+...|.+.+++.+|...|- .+..+.+..+..++.-+...+...++
T Consensus 108 ~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~i-lg~~~s~~~~a~mL~ew~~~~~~~e~ 186 (336)
T 3lpz_A 108 QPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLV-LGTKESPEVLARMEYEWYKQDESHTA 186 (336)
T ss_dssp CTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHT-TSCTTHHHHHHHHHHHHHHTSCGGGH
T ss_pred CCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHH-hcCCchHHHHHHHHHHHHHhcCCccH
Confidence 4311 11222222221 112 23467788889999999999999999884 34344446665555555444332222
Q ss_pred HHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 414 KQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
--++ ...+--|.-.++...|..+++...+
T Consensus 187 dlfi--------------aRaVL~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 187 PLYC--------------ARAVLPYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HHHH--------------HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHH--------------HHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 2211 1223346677899999887776654
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=87.84 E-value=24 Score=39.16 Aligned_cols=79 Identities=10% Similarity=0.004 Sum_probs=36.7
Q ss_pred HHHHHHHHHccCChHHHHHHHHHchhhcCCCCC----hhHHHHHHHHHhhcCCHHHHHHHHHhCCC-CCCHHHHHHHHHH
Q 036003 329 FLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPG----IKHYGCMVDLLGRAGRLDEAYRFIDELPI-KSTPILWRTLLSS 403 (558)
Q Consensus 329 ~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~~li~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~ 403 (558)
|..++..+.+.+.++.+.++-+...+. ....+ ...|..+.+.+...|++++|...+-.++. .--....+.|+..
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~-~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r~~cLr~LV~~ 980 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADAS-KETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLKKSCLLDFVNQ 980 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHH-CCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh-ccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 455555555555555555554444432 11111 12355555566666666666555554421 1122344444444
Q ss_pred HHhcC
Q 036003 404 CSSHN 408 (558)
Q Consensus 404 ~~~~g 408 (558)
++..|
T Consensus 981 lce~~ 985 (1139)
T 4fhn_B 981 LTKQG 985 (1139)
T ss_dssp HHHHC
T ss_pred HHhCC
Confidence 44433
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=87.55 E-value=3.7 Score=29.95 Aligned_cols=62 Identities=19% Similarity=0.182 Sum_probs=46.6
Q ss_pred ccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHH
Q 036003 206 PNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALID 268 (558)
Q Consensus 206 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 268 (558)
.-+..+-++.+....+.|++......+.+|.+.+++..|.++++-++... .....+|..++.
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 33566677777777888999999999999999999999999998887653 222455665553
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=87.36 E-value=2 Score=34.79 Aligned_cols=26 Identities=8% Similarity=-0.163 Sum_probs=21.8
Q ss_pred cHHhHHHHHHhcCChHHHHHHHHHHH
Q 036003 430 DYVILSNLCARAGRWEDVDYLRKLMK 455 (558)
Q Consensus 430 ~~~~l~~~~~~~g~~~~A~~~~~~m~ 455 (558)
.-.-+..+|.+.|++++|..+++.+.
T Consensus 124 lkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 124 VKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred HHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 44568889999999999999998653
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=87.11 E-value=3.2 Score=30.30 Aligned_cols=63 Identities=13% Similarity=0.153 Sum_probs=51.6
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHH
Q 036003 306 QGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVD 370 (558)
Q Consensus 306 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 370 (558)
+.-+..+-++.+....+.|+.....+.+.+|-+.+++..|.++|+.++.+.+- ...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~--~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGP--HKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTT--CTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC--chhhHHHHHH
Confidence 45577788888888889999999999999999999999999999999886443 3556777764
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=86.86 E-value=1.6 Score=45.42 Aligned_cols=123 Identities=10% Similarity=0.021 Sum_probs=68.5
Q ss_pred HHHHHHhcCCC-chHHHHHHHHhHHCCCCCCcccH--HHHHHHHHhcCcccHHHHHHHHHHHHHh------CCCCh----
Q 036003 92 TMARGYSRSKT-PIRAIFLFVELLNSGLLPDDYSF--PSLLKACACVGAEALEEGKQLHCFAIKL------GLNSN---- 158 (558)
Q Consensus 92 ~li~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~~~--~~ll~~~~~~~~~~~~~a~~~~~~~~~~------g~~~~---- 158 (558)
.++..+...|+ .+.|+.+|+++.+. .|...++ ..++..+.... ..--+|.+++.+.++. ...+.
T Consensus 253 ~Ll~~~~~t~~~~~~a~~~le~L~~~--~p~~~~~~~~~~i~~~~~~~-~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~ 329 (754)
T 4gns_B 253 SLKSFIAITPSLVDFTIDYLKGLTKK--DPIHDIYYKTAMITILDHIE-TKELDMITILNETLDPLLSLLNDLPPRDADS 329 (754)
T ss_dssp HHHHHHHTCGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHHTTCG-GGHHHHHHHHHHHHHHHHHHHHTCSSCCHHH
T ss_pred HHHHHHcccccHHHHHHHHHHHHHhh--CCchhHHHHHHHHHHHHHhh-hhhHHHHHHHHHHHHHhhhhhhhhccccccc
Confidence 34444445566 47788888888765 2332222 22233222221 2233444444444321 11111
Q ss_pred -------HHHHHHHHHHHHhCCChHHHHHHHhccCC--C-CcchHHHHHHHHHHCCCccHHHHHHHHHH
Q 036003 159 -------LYVCTTLINLYAECSDVEAARRIFENISE--P-CVVSYNAIITAYARSSRPNEALSLFRELQ 217 (558)
Q Consensus 159 -------~~~~~~ll~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 217 (558)
....+.-.+.+...|+++-|+.+-++... | +-.+|..|..+|...|+++.|+-.++.+.
T Consensus 330 ~~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 330 ARLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred ccccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 01122223445667888888888887764 4 35678888888888888888888887763
|
| >2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa} | Back alignment and structure |
|---|
Probab=86.61 E-value=7.4 Score=28.21 Aligned_cols=87 Identities=13% Similarity=0.026 Sum_probs=64.5
Q ss_pred ccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHHCCCccHHHHHHHHHH
Q 036003 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217 (558)
Q Consensus 138 ~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 217 (558)
..-++|..+-+.+...+. ...+--+-+..+...|++++|..+.+...-||...|-+|.. .+.|..+++..-+.++.
T Consensus 20 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 95 (115)
T 2uwj_G 20 HCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLG 95 (115)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 567888888888877663 33344444566788999999999999998899999877754 57788888888887887
Q ss_pred HCCCCCCHHHHH
Q 036003 218 ERNLKPTDVTML 229 (558)
Q Consensus 218 ~~~~~p~~~~~~ 229 (558)
..| .|....|.
T Consensus 96 ~sg-~p~~q~Fa 106 (115)
T 2uwj_G 96 GSS-DPALADFA 106 (115)
T ss_dssp TCS-SHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 766 45444443
|
| >2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis} | Back alignment and structure |
|---|
Probab=86.25 E-value=7.8 Score=28.14 Aligned_cols=87 Identities=15% Similarity=0.063 Sum_probs=64.2
Q ss_pred ccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHHCCCccHHHHHHHHHH
Q 036003 138 EALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQ 217 (558)
Q Consensus 138 ~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~ 217 (558)
..-++|..+-+.+...+. ...+--+-+..+...|++++|..+.+...-||...|-+|.. .+.|..+++..-+.++.
T Consensus 21 H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la 96 (116)
T 2p58_C 21 HYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLA 96 (116)
T ss_dssp TCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHH
Confidence 577888888888877663 33344444566788999999999999999999999977754 46677788887777777
Q ss_pred HCCCCCCHHHHH
Q 036003 218 ERNLKPTDVTML 229 (558)
Q Consensus 218 ~~~~~p~~~~~~ 229 (558)
..| .|....|.
T Consensus 97 ~sg-~p~~q~Fa 107 (116)
T 2p58_C 97 RSQ-DPRIQTFV 107 (116)
T ss_dssp TCC-CHHHHHHH
T ss_pred hCC-CHHHHHHH
Confidence 766 45444443
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=86.07 E-value=20 Score=32.68 Aligned_cols=168 Identities=12% Similarity=0.059 Sum_probs=101.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHH----HHHHHHHCCCCCCHHHHHHHHHHHHc
Q 036003 263 NTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSIL----MFEEMMKAQVSPDEITFLGLLYACSH 338 (558)
Q Consensus 263 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~----~~~~m~~~g~~p~~~~~~~ll~~~~~ 338 (558)
|.++..=|.+.+++++|++++.. -...+.+.|+...|-+ +.+-..+.+++++......++..+..
T Consensus 36 ~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l~~~ 104 (312)
T 2wpv_A 36 LRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRLIAE 104 (312)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Confidence 34566668888888888887543 3344566677655544 45556667888888888888777655
Q ss_pred cCChH-HHHHHHHHchh---hcC--CCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhc---CC
Q 036003 339 TGLVD-EGWNYFYSMRD---KYG--IVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSH---NN 409 (558)
Q Consensus 339 ~g~~~-~a~~~~~~~~~---~~~--~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~---g~ 409 (558)
...-+ .=.++++++.+ +.+ -.-++.....+...|.+.|++.+|...|-.-. ..+...+..++.-+... |.
T Consensus 105 ~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~-~~s~~~~a~~l~~w~~~~~~~~ 183 (312)
T 2wpv_A 105 LDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGT-HDSMIKYVDLLWDWLCQVDDIE 183 (312)
T ss_dssp CCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSC-HHHHHHHHHHHHHHHHHTTCCC
T ss_pred CCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCC-CccHHHHHHHHHHHHHhcCCCC
Confidence 32111 11222333321 111 22367788899999999999999999886322 22455565555544444 55
Q ss_pred HHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 410 LGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 410 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
..++--++-+ .+--|.-.|+...|..+++...+
T Consensus 184 ~~e~dlf~~R--------------aVL~yL~l~n~~~A~~~~~~f~~ 216 (312)
T 2wpv_A 184 DSTVAEFFSR--------------LVFNYLFISNISFAHESKDIFLE 216 (312)
T ss_dssp HHHHHHHHHH--------------HHHHHHHTTBHHHHHHHHHHHHH
T ss_pred cchHHHHHHH--------------HHHHHHHhcCHHHHHHHHHHHHH
Confidence 4444332222 22235567889999988887653
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=86.05 E-value=24 Score=33.50 Aligned_cols=59 Identities=10% Similarity=0.035 Sum_probs=29.5
Q ss_pred HHHHHHHHCCChHHHHHHHHHHHHCCCCCCH-----HHHHHHHHHHHccCChHHHHHHHHHchh
Q 036003 296 AMIVAYATHGQGHKSILMFEEMMKAQVSPDE-----ITFLGLLYACSHTGLVDEGWNYFYSMRD 354 (558)
Q Consensus 296 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-----~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 354 (558)
.++..|...|++.+|.+++.++.+.--..|. ..+..-+..|...+++.++...+.....
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~ 167 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSART 167 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHh
Confidence 3455566666666666666655542111111 2233344455555666666666555543
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=84.69 E-value=24 Score=32.43 Aligned_cols=191 Identities=11% Similarity=0.062 Sum_probs=114.2
Q ss_pred ccHHHHHHHHHHHHHhCCC----ChHHHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHHCCCccHHHHHH
Q 036003 138 EALEEGKQLHCFAIKLGLN----SNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLF 213 (558)
Q Consensus 138 ~~~~~a~~~~~~~~~~g~~----~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~ 213 (558)
+.+++.++-++.-++.|-- --..+|.++..-|.+.+++++|.+++.. -...+.+.|+...|-++-
T Consensus 10 ~~~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~ 78 (336)
T 3lpz_A 10 NKIERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLA 78 (336)
T ss_dssp CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHH
Confidence 3445555555555555511 1124566677778999999999998754 345567778876665554
Q ss_pred ----HHHHHCCCCCCHHHHHHHHHHHhccCChH-HHHHHHHHHH----HhC--CCCchhHHHHHHHHHHhcCCHHHHHHH
Q 036003 214 ----RELQERNLKPTDVTMLSALSSCALLGSLD-LGKWIHEYIK----KYG--LDKYVKVNTALIDMHAKCGRLDDAVSV 282 (558)
Q Consensus 214 ----~~m~~~~~~p~~~~~~~ll~~~~~~~~~~-~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~ 282 (558)
+-..+.++++|......++..+.....-+ .-..+.+++. +.| ..-+......+...|.+.+++.+|+..
T Consensus 79 ~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H 158 (336)
T 3lpz_A 79 VLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKH 158 (336)
T ss_dssp HHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 55566788899888888888877665422 1123333333 233 223566677788999999999999888
Q ss_pred HhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchh
Q 036003 283 FDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRD 354 (558)
Q Consensus 283 ~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~ 354 (558)
|-.-.++.+..+..++.-+...+... .++...-..++ -|...+++..|..++....+
T Consensus 159 ~ilg~~~s~~~~a~mL~ew~~~~~~~--------------e~dlfiaRaVL-~yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 159 LVLGTKESPEVLARMEYEWYKQDESH--------------TAPLYCARAVL-PYLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp HTTSCTTHHHHHHHHHHHHHHTSCGG--------------GHHHHHHHHHH-HHHHTTCHHHHHHHHHHHHH
T ss_pred HHhcCCchHHHHHHHHHHHHHhcCCc--------------cHHHHHHHHHH-HHHHhCCHHHHHHHHHHHHH
Confidence 74322222355544444443333211 11222233333 35556788888887766664
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=84.26 E-value=32 Score=33.39 Aligned_cols=196 Identities=12% Similarity=0.079 Sum_probs=111.4
Q ss_pred CChHHHHHHHhccCC-----C----CcchHHHHHHHHHHCCCccHHHHHHHHHHHC-CCCCCHHHHHHHHHH----Hhcc
Q 036003 173 SDVEAARRIFENISE-----P----CVVSYNAIITAYARSSRPNEALSLFRELQER-NLKPTDVTMLSALSS----CALL 238 (558)
Q Consensus 173 g~~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~-~~~p~~~~~~~ll~~----~~~~ 238 (558)
|+++.|.+.+-.+.+ . .......++..|...|+++...+.+..+.+. |..+. ....++.. ....
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~--ai~~~V~~~~~~l~~~ 107 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKL--SIQYMIQKVMEYLKSS 107 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHH--HHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHH--HHHHHHHHHHHHHhcC
Confidence 678888777654432 2 2334667888888899998887777665433 33222 22333332 2233
Q ss_pred CChHHHHH--HHHHHHH--hC-CCC---chhHHHHHHHHHHhcCCHHHHHHHHhccCC----C-----CHHhHHHHHHHH
Q 036003 239 GSLDLGKW--IHEYIKK--YG-LDK---YVKVNTALIDMHAKCGRLDDAVSVFDNMSG----K-----DTQAWSAMIVAY 301 (558)
Q Consensus 239 ~~~~~a~~--~~~~~~~--~~-~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~-----~~~~~~~li~~~ 301 (558)
...+.... +.+.+.. .| +-. .......|...|...|++.+|.+++..+.. . -+..+...+..|
T Consensus 108 ~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~ 187 (445)
T 4b4t_P 108 KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELS 187 (445)
T ss_dssp CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHH
T ss_pred CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 33332211 1111110 01 111 223445678889999999999998888751 1 234577778888
Q ss_pred HHCCChHHHHHHHHHHHH----CCCCCCH--HHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhc
Q 036003 302 ATHGQGHKSILMFEEMMK----AQVSPDE--ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRA 375 (558)
Q Consensus 302 ~~~~~~~~a~~~~~~m~~----~g~~p~~--~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~ 375 (558)
...+++.+|..++++... ....|+. ..+...+..+...+++.+|.+. |..+...+...
T Consensus 188 l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~----------------y~e~~~~~~~~ 251 (445)
T 4b4t_P 188 ILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQY----------------LQEIYQTDAIK 251 (445)
T ss_dssp HHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHH----------------HHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHH----------------HHHHHhccccc
Confidence 899999999998888642 2222222 2344555555666666665443 34455556666
Q ss_pred CCHHHHHHHHH
Q 036003 376 GRLDEAYRFID 386 (558)
Q Consensus 376 g~~~~A~~~~~ 386 (558)
++.......+.
T Consensus 252 ~d~~~~~~~L~ 262 (445)
T 4b4t_P 252 SDEAKWKPVLS 262 (445)
T ss_dssp SCHHHHHHHHH
T ss_pred CCHHHHHHHHH
Confidence 66554444333
|
| >3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=83.85 E-value=5.4 Score=32.35 Aligned_cols=109 Identities=6% Similarity=-0.013 Sum_probs=52.3
Q ss_pred HHHHHhcCCHHHHHHHHhccC-----CCCH-------HhHHHHHHHHHHCCChHHHHHHHHHHHHCC-CCCCH-HHHHHH
Q 036003 267 IDMHAKCGRLDDAVSVFDNMS-----GKDT-------QAWSAMIVAYATHGQGHKSILMFEEMMKAQ-VSPDE-ITFLGL 332 (558)
Q Consensus 267 ~~~~~~~g~~~~A~~~~~~~~-----~~~~-------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~-~~~~~l 332 (558)
+..+...|.++.|+-+.+.+. .++. .++..+..++...+++.+|...|++..+.. .-+.. .+...+
T Consensus 27 ik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~k~l~k~~s~~~~~ 106 (167)
T 3ffl_A 27 VRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQKKALSKTSKVRPST 106 (167)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHCC----------
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCccccc
Confidence 555666677777766665543 1221 134555666677777777777777654311 11111 111000
Q ss_pred HHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCC
Q 036003 333 LYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELP 389 (558)
Q Consensus 333 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~ 389 (558)
- ...... . ......+.+.---+..+|.+.+++++|+.+++.++
T Consensus 107 ~---~~ss~p-~----------s~~~~~e~Elkykia~C~~~l~~~~~Ai~~Le~Ip 149 (167)
T 3ffl_A 107 G---NSASTP-Q----------SQCLPSEIEVKYKLAECYTVLKQDKDAIAILDGIP 149 (167)
T ss_dssp ------------------------CCCCHHHHHHHHHHHHHHTTCHHHHHHHHHTSC
T ss_pred c---ccCCCc-c----------cccccchHHHHHHHHHHHHHHCCHHHHHHHHhcCC
Confidence 0 000000 0 00122233444446677777777777777777774
|
| >1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=82.85 E-value=16 Score=28.78 Aligned_cols=70 Identities=11% Similarity=0.133 Sum_probs=51.1
Q ss_pred CCChhHHHHHHHHHhhcCCHH---HHHHHHHhC-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCc
Q 036003 359 VPGIKHYGCMVDLLGRAGRLD---EAYRFIDEL-PIKS--TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHG 428 (558)
Q Consensus 359 ~~~~~~~~~li~~~~~~g~~~---~A~~~~~~~-~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 428 (558)
.|+..+--.+..++.+..+.+ +++.+++++ ...| .-.....|.-++.+.|++++|.++.+.+++.+|.|.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~ 111 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 111 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcH
Confidence 466666666777777766554 566677666 2233 234556677889999999999999999999999873
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=82.63 E-value=9.5 Score=36.32 Aligned_cols=69 Identities=17% Similarity=0.165 Sum_probs=47.3
Q ss_pred HHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchh----hcCCCCChhH
Q 036003 295 SAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRD----KYGIVPGIKH 364 (558)
Q Consensus 295 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~ 364 (558)
..++..+...|++++++..++.+... -+-+...+..+|.++.+.|+..+|.+.|+.+.. ..|+.|+..+
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~-~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFE-HPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH-STTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 44566667777777777777777663 233667777888888888888888877776654 2367776554
|
| >3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A | Back alignment and structure |
|---|
Probab=82.31 E-value=8.4 Score=29.85 Aligned_cols=69 Identities=12% Similarity=0.122 Sum_probs=45.3
Q ss_pred CChhHHHHHHHHHhhcCCH---HHHHHHHHhC-CCCC--CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCc
Q 036003 360 PGIKHYGCMVDLLGRAGRL---DEAYRFIDEL-PIKS--TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHG 428 (558)
Q Consensus 360 ~~~~~~~~li~~~~~~g~~---~~A~~~~~~~-~~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~ 428 (558)
|+..+--.+..++.+..+. .+++.+++++ ...| ....+.-|.-++.+.|++++|.++.+.+++..|.+.
T Consensus 38 vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~ 112 (134)
T 3o48_A 38 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNK 112 (134)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCH
T ss_pred CChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCH
Confidence 4555555556666665544 3456666655 2223 234566677788888888888888888888888764
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=81.34 E-value=7.8 Score=30.01 Aligned_cols=63 Identities=14% Similarity=0.207 Sum_probs=51.9
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHH
Q 036003 306 QGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVD 370 (558)
Q Consensus 306 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 370 (558)
|.-+..+-++.+....+.|+.......+.+|-+.+++..|.++|+-++.+.+ +...+|..+++
T Consensus 68 D~wElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~--~~~~iY~y~lq 130 (152)
T 2y69_E 68 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 130 (152)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcC--CchhhHHHHHH
Confidence 4556777788888888999999999999999999999999999999988643 44567777764
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 558 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.91 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.9 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.59 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.59 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.24 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.12 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 99.07 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 99.06 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 99.06 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.04 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 99.02 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.99 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.96 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.82 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.65 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.59 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.57 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.53 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.53 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.52 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.51 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 98.48 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.44 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.43 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.38 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.35 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.31 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.26 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 98.23 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.22 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 98.19 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 98.18 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 98.09 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.08 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 98.08 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 98.02 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.99 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.97 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.95 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.94 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.94 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.86 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.86 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.6 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.58 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.56 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.55 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.47 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 97.36 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 97.26 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.24 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 97.2 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 97.09 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.92 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 96.4 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 96.1 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 95.28 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 95.01 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.84 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 94.76 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 91.82 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 90.38 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 86.3 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 85.04 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.91 E-value=2.7e-21 Score=187.75 Aligned_cols=371 Identities=12% Similarity=0.074 Sum_probs=288.2
Q ss_pred HHHhhcCCCCCCHHHHHHHHccCCC--C-CcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcC
Q 036003 60 INFCTQNPTTSSMEHAHLLFDRIPE--P-DIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVG 136 (558)
Q Consensus 60 i~~~~~~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~ 136 (558)
...+-+. |++++|.+.|+++.+ | +...+..+...|.+.|++++|+..|++..+.... +..++..+...+...
T Consensus 6 a~~~~~~---G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~~~~~~- 80 (388)
T d1w3ba_ 6 AHREYQA---GDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPL-LAEAYSNLGNVYKER- 80 (388)
T ss_dssp HHHHHHH---TCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH-
T ss_pred HHHHHHc---CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHhhhh-
Confidence 3455566 899999998887753 3 4667888888889999999999999988775322 456777788888888
Q ss_pred cccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccC---CCCcchHHHHHHHHHHCCCccHHHHHH
Q 036003 137 AEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENIS---EPCVVSYNAIITAYARSSRPNEALSLF 213 (558)
Q Consensus 137 ~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~A~~~~ 213 (558)
|++++|...+....+... .+..............+....+........ .................+....+...+
T Consensus 81 -g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (388)
T d1w3ba_ 81 -GQLQEAIEHYRHALRLKP-DFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp -TCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred -cccccccccccccccccc-ccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHH
Confidence 899999999988888753 333444444444444455444444433332 244455556666677778888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC---CCC
Q 036003 214 RELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS---GKD 290 (558)
Q Consensus 214 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~ 290 (558)
....... +-+...+..+...+...|++++|...++...+.. +.+...+..+...+...|++++|...|+... ..+
T Consensus 159 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~ 236 (388)
T d1w3ba_ 159 LKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNH 236 (388)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTC
T ss_pred HHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhC-cccHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhhH
Confidence 7776652 3456677778888889999999999999888764 3456778888999999999999999988765 346
Q ss_pred HHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHH
Q 036003 291 TQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP-DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMV 369 (558)
Q Consensus 291 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li 369 (558)
...+..+...+.+.|++++|+..|++..+. .| +...+..+...+...|++++|.+.++.... ..+.+...+..+.
T Consensus 237 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~~~~l~ 312 (388)
T d1w3ba_ 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIEL--QPHFPDAYCNLANALKEKGSVAEAEDCYNTALR--LCPTHADSLNNLA 312 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT--CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH--HCTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhc--cCCccchhhhHHH
Confidence 677888889999999999999999998884 34 467788888899999999999999998876 4556778888899
Q ss_pred HHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCC
Q 036003 370 DLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGR 443 (558)
Q Consensus 370 ~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 443 (558)
..+.+.|++++|++.|++. ...| +..++..+..++...|++++|...|+++++++|.++.+|..|+.+|.+.||
T Consensus 313 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~lg~~~~~~~D 388 (388)
T d1w3ba_ 313 NIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 9999999999999999886 4455 467788899999999999999999999999999999999999999988875
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.90 E-value=1.4e-20 Score=182.68 Aligned_cols=355 Identities=12% Similarity=0.049 Sum_probs=294.7
Q ss_pred HHHHHhcCCCchHHHHHHHHhHHCCCCC-CcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHh
Q 036003 93 MARGYSRSKTPIRAIFLFVELLNSGLLP-DDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAE 171 (558)
Q Consensus 93 li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~ 171 (558)
+...+.+.|++++|++.|+++.+. .| +...+..+...+... |++++|...++++++.. +.+..++..+..+|.+
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~--~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~ 79 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQC--RRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKE 79 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhh
Confidence 345667889999999999999875 34 456777777888888 99999999999999875 4467889999999999
Q ss_pred CCChHHHHHHHhccCC---CCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHH
Q 036003 172 CSDVEAARRIFENISE---PCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIH 248 (558)
Q Consensus 172 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~ 248 (558)
.|++++|...+....+ .+...+..........+....+........... .................+....+...+
T Consensus 80 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~ 158 (388)
T d1w3ba_ 80 RGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYN-PDLYCVRSDLGNLLKALGRLEEAKACY 158 (388)
T ss_dssp HTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHH
T ss_pred hccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccccchhhhhHHHH
Confidence 9999999999988865 344445555566666777777777776665543 344455556666677788888888888
Q ss_pred HHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCC
Q 036003 249 EYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMS---GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPD 325 (558)
Q Consensus 249 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 325 (558)
....... +.+...+..+...+...|++++|...+++.. ..+..+|..+...+...|++++|+..+++....+ ..+
T Consensus 159 ~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~ 236 (388)
T d1w3ba_ 159 LKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS-PNH 236 (388)
T ss_dssp HHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC-TTC
T ss_pred HHhhccC-cchhHHHHhhcccccccCcHHHHHHHHHHHHHhCcccHHHHHHHhhhhhccccHHHHHHHHHHhHHHh-hhH
Confidence 8877764 4456677788999999999999999998765 3467789999999999999999999999998854 345
Q ss_pred HHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHH
Q 036003 326 EITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL--PIKSTPILWRTLLSS 403 (558)
Q Consensus 326 ~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~ 403 (558)
...+..+...+.+.|++++|...|++..+ -.+.+...+..+...+...|++++|.+.++.. ..+.+...+..+...
T Consensus 237 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 314 (388)
T d1w3ba_ 237 AVVHGNLACVYYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANI 314 (388)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccCCccchhhhHHHHH
Confidence 67788888999999999999999999886 33456788999999999999999999999887 334577888999999
Q ss_pred HHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhC
Q 036003 404 CSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 404 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
+...|++++|+..|+++++..|.++.++..++.+|.+.|++++|.+.|++..+.
T Consensus 315 ~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 368 (388)
T d1w3ba_ 315 KREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHTTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999998763
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=9.3e-14 Score=130.55 Aligned_cols=240 Identities=11% Similarity=-0.047 Sum_probs=167.9
Q ss_pred HHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC
Q 036003 195 AIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCG 274 (558)
Q Consensus 195 ~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 274 (558)
.....+.+.|++++|+..|++..+.. +-+...|..+..++...|++++|...+.++.+.. +-+...+..+..+|...|
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~ 101 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNES 101 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccc
Confidence 45666778888888888888887753 3346677777777888888888888888777664 334566666777777777
Q ss_pred CHHHHHHHHhccCCCCHH---hHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHH
Q 036003 275 RLDDAVSVFDNMSGKDTQ---AWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYS 351 (558)
Q Consensus 275 ~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~ 351 (558)
++++|.+.++.....+.. .+....... ...+.......+..+...+.+.+|...+.+
T Consensus 102 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 161 (323)
T d1fcha_ 102 LQRQACEILRDWLRYTPAYAHLVTPAEEGA--------------------GGAGLGPSKRILGSLLSDSLFLEVKELFLA 161 (323)
T ss_dssp CHHHHHHHHHHHHHTSTTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHHHH
T ss_pred cccccccchhhHHHhccchHHHHHhhhhhh--------------------hhcccccchhhHHHHHHhhHHHHHHHHHHH
Confidence 777777776665322110 000000000 000000111112233344566778888877
Q ss_pred chhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcc
Q 036003 352 MRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGG 429 (558)
Q Consensus 352 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 429 (558)
......-..+...+..+...+...|++++|...|++. ...| +...|..+..++...|++++|.+.|+++++.+|.++.
T Consensus 162 al~~~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~ 241 (323)
T d1fcha_ 162 AVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIR 241 (323)
T ss_dssp HHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHH
T ss_pred HHHHhhcccccccchhhHHHHHHHHHHhhhhcccccccccccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHH
Confidence 7654333456677888889999999999999999886 3233 5778999999999999999999999999999999999
Q ss_pred cHHhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 430 DYVILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 430 ~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
+|..++.+|.+.|++++|.+.|++..+
T Consensus 242 a~~~lg~~~~~~g~~~~A~~~~~~al~ 268 (323)
T d1fcha_ 242 SRYNLGISCINLGAHREAVEHFLEALN 268 (323)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 999999999999999999999998876
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.59 E-value=2.3e-13 Score=127.85 Aligned_cols=265 Identities=12% Similarity=0.021 Sum_probs=192.5
Q ss_pred HHHHHHHhCCChHHHHHHHhccCC--C-CcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCC
Q 036003 164 TLINLYAECSDVEAARRIFENISE--P-CVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGS 240 (558)
Q Consensus 164 ~ll~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 240 (558)
.....+.+.|++++|...|+++.+ | +..+|..+..+|...|++++|...|.+..+.. +-+...+..+..++...|+
T Consensus 24 ~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~ 102 (323)
T d1fcha_ 24 EEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESL 102 (323)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-ccccccccccccccccccc
Confidence 356678899999999999999875 3 46689999999999999999999999988753 3356788888899999999
Q ss_pred hHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHC
Q 036003 241 LDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKA 320 (558)
Q Consensus 241 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 320 (558)
+++|...++.+........ ..+....... .. .+.......+..+...+.+.+|...|.+..+.
T Consensus 103 ~~~A~~~~~~~~~~~~~~~-~~~~~~~~~~-~~---------------~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~ 165 (323)
T d1fcha_ 103 QRQACEILRDWLRYTPAYA-HLVTPAEEGA-GG---------------AGLGPSKRILGSLLSDSLFLEVKELFLAAVRL 165 (323)
T ss_dssp HHHHHHHHHHHHHTSTTTG-GGCC-------------------------------CTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccchhhHHHhccchH-HHHHhhhhhh-hh---------------cccccchhhHHHHHHhhHHHHHHHHHHHHHHH
Confidence 9999999999887542211 1000000000 00 01111111222334455677888888887763
Q ss_pred C-CCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHH
Q 036003 321 Q-VSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILW 397 (558)
Q Consensus 321 g-~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~ 397 (558)
. -.++...+..+...+...|++++|...|++.... .+-+...|..+...|.+.|++++|.+.|++. ...| +..+|
T Consensus 166 ~p~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~ 243 (323)
T d1fcha_ 166 DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV--RPNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPGYIRSR 243 (323)
T ss_dssp STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred hhcccccccchhhHHHHHHHHHHhhhhccccccccc--ccccccchhhhhhcccccccchhHHHHHHHHHHHhhccHHHH
Confidence 3 2345677888888899999999999999998863 3345788889999999999999999999987 3344 57789
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHccCCCCccc-----------HHhHHHHHHhcCChHHHH
Q 036003 398 RTLLSSCSSHNNLGLAKQVIERIFELDDSHGGD-----------YVILSNLCARAGRWEDVD 448 (558)
Q Consensus 398 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-----------~~~l~~~~~~~g~~~~A~ 448 (558)
..++.+|...|++++|++.|++++++.|.+... |..+..++...|+.+.+.
T Consensus 244 ~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~ 305 (323)
T d1fcha_ 244 YNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 305 (323)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999999999999988776543 334555666666655443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.24 E-value=1.9e-09 Score=101.52 Aligned_cols=260 Identities=12% Similarity=-0.008 Sum_probs=159.6
Q ss_pred HHHHHHCCCccHHHHHHHHHHHCCCCCC----HHHHHHHHHHHhccCChHHHHHHHHHHHHhCC--C---CchhHHHHHH
Q 036003 197 ITAYARSSRPNEALSLFRELQERNLKPT----DVTMLSALSSCALLGSLDLGKWIHEYIKKYGL--D---KYVKVNTALI 267 (558)
Q Consensus 197 i~~~~~~g~~~~A~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~--~---~~~~~~~~l~ 267 (558)
...+...|++++|++++++..+.....+ ...+..+..++...|++++|...+++..+... . .....+..+.
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 98 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 3445556666666666666554321111 12344455566666666666666665543210 0 1123344455
Q ss_pred HHHHhcCCHHHHHHHHhccCC-------C----CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCC----CCCCHHHHHHH
Q 036003 268 DMHAKCGRLDDAVSVFDNMSG-------K----DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQ----VSPDEITFLGL 332 (558)
Q Consensus 268 ~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g----~~p~~~~~~~l 332 (558)
..+...|++..+...+..... + ....+..+...+...|+++.+...+....... .......+...
T Consensus 99 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (366)
T d1hz4a_ 99 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAML 178 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHHHHHH
Confidence 666667777777666654421 1 12245556677778888888888887776532 12223455556
Q ss_pred HHHHHccCChHHHHHHHHHchhhcCCCC-----ChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-----CHHHHHHHH
Q 036003 333 LYACSHTGLVDEGWNYFYSMRDKYGIVP-----GIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-----TPILWRTLL 401 (558)
Q Consensus 333 l~~~~~~g~~~~a~~~~~~~~~~~~~~~-----~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-----~~~~~~~l~ 401 (558)
...+...++...+...+........-.. ....+..+...+...|++++|...+++. ...+ ....+..+.
T Consensus 179 ~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la 258 (366)
T d1hz4a_ 179 IQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIA 258 (366)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHHHHHH
Confidence 6667777888887777766554322111 1234555666778888899998888876 2111 234566678
Q ss_pred HHHHhcCCHHHHHHHHHHHHcc------CCCCcccHHhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 402 SSCSSHNNLGLAKQVIERIFEL------DDSHGGDYVILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 402 ~~~~~~g~~~~a~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
.++...|++++|...+++++.. .|....++..++.+|.+.|++++|.+.+++..+
T Consensus 259 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 259 RAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8888889999999998888643 244456788888889999999999998887654
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.12 E-value=5.1e-09 Score=98.49 Aligned_cols=221 Identities=11% Similarity=-0.007 Sum_probs=131.8
Q ss_pred HHHHHHHhccCChHHHHHHHHHHHHh----CCCC---chhHHHHHHHHHHhcCCHHHHHHHHhccCCC--------CHHh
Q 036003 229 LSALSSCALLGSLDLGKWIHEYIKKY----GLDK---YVKVNTALIDMHAKCGRLDDAVSVFDNMSGK--------DTQA 293 (558)
Q Consensus 229 ~~ll~~~~~~~~~~~a~~~~~~~~~~----~~~~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------~~~~ 293 (558)
..+...+...|++..+...+...... .... ....+..+...+...|+++.+...+...... ....
T Consensus 95 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 174 (366)
T d1hz4a_ 95 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 174 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHH
Confidence 33444455555666555555544321 1111 1123444556666667777766666554311 2334
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCC--ChhHH
Q 036003 294 WSAMIVAYATHGQGHKSILMFEEMMKA----QVSPD--EITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVP--GIKHY 365 (558)
Q Consensus 294 ~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~--~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~--~~~~~ 365 (558)
+..+...+...++...+...+.+.... +..+. ...+..+...+...|+++.|...++.........+ ....+
T Consensus 175 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 254 (366)
T d1hz4a_ 175 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQW 254 (366)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHH
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchHHHHHH
Confidence 555566667777777777777665431 11111 13445556677788999999998888765311111 23445
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-------CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCc---------
Q 036003 366 GCMVDLLGRAGRLDEAYRFIDEL-------PIKST-PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHG--------- 428 (558)
Q Consensus 366 ~~li~~~~~~g~~~~A~~~~~~~-------~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~--------- 428 (558)
..+...+...|++++|...+++. +..|+ ...+..+...|...|++++|.+.+++++++.+...
T Consensus 255 ~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~~~~~~~~ 334 (366)
T d1hz4a_ 255 RNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFISHFVIEG 334 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCCHHHHTTH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcHHHHHHHH
Confidence 66788889999999998888875 22232 35677788899999999999999999987653321
Q ss_pred ccHHhHHHHHHhcCChHHHHH
Q 036003 429 GDYVILSNLCARAGRWEDVDY 449 (558)
Q Consensus 429 ~~~~~l~~~~~~~g~~~~A~~ 449 (558)
..+..++..+...++.+++.+
T Consensus 335 ~~~~~~~~~l~~~~~l~e~e~ 355 (366)
T d1hz4a_ 335 EAMAQQLRQLIQLNTLPELEQ 355 (366)
T ss_dssp HHHHHHHHHHHHTTCSCHHHH
T ss_pred HHHHHHHHHHHhcCCChHHHH
Confidence 123334444555566655543
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=99.07 E-value=1.6e-09 Score=97.40 Aligned_cols=221 Identities=10% Similarity=-0.062 Sum_probs=136.4
Q ss_pred ccHHHHHHHHHHHCCC-CC--CHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHH
Q 036003 206 PNEALSLFRELQERNL-KP--TDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSV 282 (558)
Q Consensus 206 ~~~A~~~~~~m~~~~~-~p--~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 282 (558)
.+.++.-+++...... .+ ...++..+..+|.+.|++++|...|++..+.. +-+..+|..+..+|.+.|++++|+..
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 3455555555554321 11 12355566777788888888888888887764 44567777888888888888888888
Q ss_pred HhccCC---CCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCC
Q 036003 283 FDNMSG---KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIV 359 (558)
Q Consensus 283 ~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~ 359 (558)
|++..+ .+..+|..+..+|...|++++|...|++..+.. +.+......+..++.+.+..+.+..+...... ..
T Consensus 94 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~ 169 (259)
T d1xnfa_ 94 FDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK---SD 169 (259)
T ss_dssp HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH---SC
T ss_pred hhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc---cc
Confidence 887753 256678888888888899999999998888743 22344433444444555555555444444433 22
Q ss_pred CChhHHHHHHHHHhhcCCH----HHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHH
Q 036003 360 PGIKHYGCMVDLLGRAGRL----DEAYRFIDEL-PIKST-PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYV 432 (558)
Q Consensus 360 ~~~~~~~~li~~~~~~g~~----~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 432 (558)
+....+. ++..+...... +.+...+... ...|+ ..+|..+...+...|++++|...|+++++.+|.+...|.
T Consensus 170 ~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 247 (259)
T d1xnfa_ 170 KEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVEHR 247 (259)
T ss_dssp CCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHHHH
T ss_pred hhhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHH
Confidence 2222222 22232222222 2222221111 11122 246777888999999999999999999999998754443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=99.06 E-value=3.8e-10 Score=105.86 Aligned_cols=231 Identities=10% Similarity=-0.061 Sum_probs=165.0
Q ss_pred HCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC--ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHH
Q 036003 202 RSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLG--SLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDA 279 (558)
Q Consensus 202 ~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 279 (558)
..|++++|+.+++...+.. +-+...+..+..++...+ +++++...+..+.+.........+......+...|.+++|
T Consensus 85 ~~~~~~~al~~~~~~l~~~-pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A 163 (334)
T d1dcea1 85 SAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEE 163 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHH
T ss_pred HHHHHHHHHHHHHHHHHhC-CCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHH
Confidence 3455778888888877653 334555665655555544 5788888888888875333333334455777788999999
Q ss_pred HHHHhccCCC---CHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhc
Q 036003 280 VSVFDNMSGK---DTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKY 356 (558)
Q Consensus 280 ~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 356 (558)
+..++.+.+. +..+|+.+...+.+.|++++|...+++..+. .|+. ..+...+...+..+++...+.....
T Consensus 164 l~~~~~~i~~~p~~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~-- 236 (334)
T d1dcea1 164 LAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLL-- 236 (334)
T ss_dssp HHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHH--
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHH--
Confidence 9999887754 6778888888999998888776655544431 1221 1223334555666777777777765
Q ss_pred CCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhH
Q 036003 357 GIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVIL 434 (558)
Q Consensus 357 ~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l 434 (558)
.-+++...+..++..+...|+.++|...+.+. ...| +..+|..+..++...|++++|.+.++++++++|.+...|..|
T Consensus 237 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~ldP~~~~y~~~L 316 (334)
T d1dcea1 237 GRAEPLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLDDL 316 (334)
T ss_dssp SCCCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHHHH
T ss_pred hCcchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCcccHHHHHHH
Confidence 34455666777788888889999999999887 4445 356788899999999999999999999999999888878877
Q ss_pred HHHHHh
Q 036003 435 SNLCAR 440 (558)
Q Consensus 435 ~~~~~~ 440 (558)
...+.-
T Consensus 317 ~~~~~~ 322 (334)
T d1dcea1 317 RSKFLL 322 (334)
T ss_dssp HHHHHH
T ss_pred HHHHhH
Confidence 666653
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=99.06 E-value=1.4e-08 Score=93.64 Aligned_cols=185 Identities=12% Similarity=0.067 Sum_probs=115.3
Q ss_pred ChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCC---C-HHhHHHHHHHHHHCCChHHHHHHHH
Q 036003 240 SLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGK---D-TQAWSAMIVAYATHGQGHKSILMFE 315 (558)
Q Consensus 240 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~-~~~~~~li~~~~~~~~~~~a~~~~~ 315 (558)
..+++..++++..+...+.+...|..++..+.+.|+++.|..+|+++.+. + ...|...+....+.|+.++|..+|+
T Consensus 79 ~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~ 158 (308)
T d2onda1 79 FSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHH
Confidence 34566677777665544455566666677777777777777777765432 2 3356677777777777777777777
Q ss_pred HHHHCCCCCCHHHHHHHHH-HHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC----CC
Q 036003 316 EMMKAQVSPDEITFLGLLY-ACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL----PI 390 (558)
Q Consensus 316 ~m~~~g~~p~~~~~~~ll~-~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~ 390 (558)
++.+.+.. +...|..... -+...|+.+.|..+|+.+... .+.+...|...++.+.+.|+++.|..+|++. +.
T Consensus 159 ~al~~~~~-~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~--~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 159 KAREDART-RHHVYVTAALMEYYCSKDKSVAFKIFELGLKK--YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHTSTTC-CTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHH--HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHhCCC-cHHHHHHHHHHHHHhccCHHHHHHHHHHHHHh--hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 77665322 2222322222 233456777777777777753 3445666777777777777777777777764 22
Q ss_pred CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC
Q 036003 391 KST--PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH 427 (558)
Q Consensus 391 ~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 427 (558)
.|+ ...|...+..-...|+.+.+..+++++.+.-|..
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~~~~~ 274 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFREE 274 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHTTTT
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCccc
Confidence 222 3466666666667777777777777776665544
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.04 E-value=1.6e-08 Score=93.26 Aligned_cols=206 Identities=15% Similarity=0.134 Sum_probs=114.3
Q ss_pred hHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC-ChHHHHHHHHHHHHhCCCCchhHHHHHHHHH
Q 036003 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLG-SLDLGKWIHEYIKKYGLDKYVKVNTALIDMH 270 (558)
Q Consensus 192 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 270 (558)
+|+.+...+.+.+.+++|+++++++++.+ +-+...|+....++...| ++++|...++.+.+.. +-+..+|..+...+
T Consensus 45 a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 45 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHHH
Confidence 34555556666677777777777776642 223445555555655554 4677777777666654 33455666666666
Q ss_pred HhcCCHHHHHHHHhccCC---CCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHccCC-----
Q 036003 271 AKCGRLDDAVSVFDNMSG---KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP-DEITFLGLLYACSHTGL----- 341 (558)
Q Consensus 271 ~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~ll~~~~~~g~----- 341 (558)
.+.|++++|+..|+++.+ .+..+|..+...+...|++++|+..++++++. .| +...|+.+...+.+.+.
T Consensus 123 ~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~--~p~n~~a~~~r~~~l~~~~~~~~~~ 200 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDRA 200 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--CCccHHHHHHHHHHHHHccccchhh
Confidence 677777777777666542 35666666777777777777777777777663 23 34455554444444333
Q ss_pred -hHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCCCHHHHHHHHHHH
Q 036003 342 -VDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL----PIKSTPILWRTLLSSC 404 (558)
Q Consensus 342 -~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~~~~~~~~l~~~~ 404 (558)
+++|.+.+....+. .+.+...|..+...+...| .+++.+.++.. +...+...+..++..|
T Consensus 201 ~~~~ai~~~~~al~~--~P~~~~~~~~l~~ll~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y 265 (315)
T d2h6fa1 201 VLEREVQYTLEMIKL--VPHNESAWNYLKGILQDRG-LSKYPNLLNQLLDLQPSHSSPYLIAFLVDIY 265 (315)
T ss_dssp HHHHHHHHHHHHHHH--STTCHHHHHHHHHHHTTTC-GGGCHHHHHHHHHHTTTCCCHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHh--CCCchHHHHHHHHHHHhcC-hHHHHHHHHHHHHhCCCcCCHHHHHHHHHHH
Confidence 45566666555542 2234455555544443332 34444444332 2222344444444444
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.02 E-value=1.1e-08 Score=94.56 Aligned_cols=211 Identities=9% Similarity=0.070 Sum_probs=165.0
Q ss_pred HHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcC-CHHHHHHHHhccC---CCCHHhHHHHHHHH
Q 036003 226 VTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCG-RLDDAVSVFDNMS---GKDTQAWSAMIVAY 301 (558)
Q Consensus 226 ~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~---~~~~~~~~~li~~~ 301 (558)
..|+.+...+.+.+..++|..+++++.+.. |-+...|+....++...| ++++|+..++... ..+..+|+.+...+
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHH
Confidence 456666777888899999999999999985 556778888888888876 5899999999875 34788999999999
Q ss_pred HHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCC----
Q 036003 302 ATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGR---- 377 (558)
Q Consensus 302 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~---- 377 (558)
.+.|++++|+..++++.+.. +-+...|..+...+...|++++|.+.++.+.+. -+.+...|+.+...+.+.+.
T Consensus 123 ~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~--~p~n~~a~~~r~~~l~~~~~~~~~ 199 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVRNNSVWNQRYFVISNTTGYNDR 199 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHH--CCccHHHHHHHHHHHHHccccchh
Confidence 99999999999999999843 225789999999999999999999999999863 23456778777776666554
Q ss_pred --HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcc--cHHhHHHHHHhc
Q 036003 378 --LDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGG--DYVILSNLCARA 441 (558)
Q Consensus 378 --~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~--~~~~l~~~~~~~ 441 (558)
+++|++.+.+. ...| +...|+.+...+.. ...+++.+.++++.++.|.... .+..++.+|...
T Consensus 200 ~~~~~ai~~~~~al~~~P~~~~~~~~l~~ll~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~~y~~~ 268 (315)
T d2h6fa1 200 AVLEREVQYTLEMIKLVPHNESAWNYLKGILQD-RGLSKYPNLLNQLLDLQPSHSSPYLIAFLVDIYEDM 268 (315)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTT-TCGGGCHHHHHHHHHHTTTCCCHHHHHHHHHHHHHH
T ss_pred hhhHHhHHHHHHHHHhCCCchHHHHHHHHHHHh-cChHHHHHHHHHHHHhCCCcCCHHHHHHHHHHHHHH
Confidence 57888888776 3344 67778777666544 4568889999999888866543 455667776543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.99 E-value=4e-08 Score=90.49 Aligned_cols=181 Identities=9% Similarity=0.056 Sum_probs=143.8
Q ss_pred CCHHHHHHHHhccC----CCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 036003 274 GRLDDAVSVFDNMS----GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYF 349 (558)
Q Consensus 274 g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 349 (558)
+..++|..+|++.. ..+...|...+..+...|++++|..+|+++.+.........|...+..+.+.|+++.|.++|
T Consensus 78 ~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~ 157 (308)
T d2onda1 78 LFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIF 157 (308)
T ss_dssp HHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHH
Confidence 34577888888754 23667788889999999999999999999987543333457888899999999999999999
Q ss_pred HHchhhcCCCCChhHHHHHHHH-HhhcCCHHHHHHHHHhC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCC
Q 036003 350 YSMRDKYGIVPGIKHYGCMVDL-LGRAGRLDEAYRFIDEL--PIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDS 426 (558)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~li~~-~~~~g~~~~A~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 426 (558)
+++.+ ..+.+...|...+.. +...|+.+.|..+|+.+ ....+...|...+..+...|+++.|..+|++++...|.
T Consensus 158 ~~al~--~~~~~~~~~~~~a~~e~~~~~~~~~a~~i~e~~l~~~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~ 235 (308)
T d2onda1 158 KKARE--DARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSL 235 (308)
T ss_dssp HHHHT--STTCCTHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSS
T ss_pred HHHHH--hCCCcHHHHHHHHHHHHHhccCHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC
Confidence 99986 333445555555543 34468999999999988 22346788999999999999999999999999998765
Q ss_pred Ccc----cHHhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 427 HGG----DYVILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 427 ~~~----~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
++. .|...+..-...|+.+.+.++++++.+
T Consensus 236 ~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~ 269 (308)
T d2onda1 236 PPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 269 (308)
T ss_dssp CGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 543 577778777888999999999998865
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.96 E-value=4.7e-09 Score=94.15 Aligned_cols=213 Identities=9% Similarity=-0.036 Sum_probs=145.8
Q ss_pred hHHHHHHHHHHHHhCC-CC--chhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHHhHHHHHHHHHHCCChHHHHHHH
Q 036003 241 LDLGKWIHEYIKKYGL-DK--YVKVNTALIDMHAKCGRLDDAVSVFDNMS---GKDTQAWSAMIVAYATHGQGHKSILMF 314 (558)
Q Consensus 241 ~~~a~~~~~~~~~~~~-~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~ 314 (558)
.+.+..-++++..... .+ ...++..+..+|.+.|++++|+..|++.. ..++.+|+.+..+|.+.|++++|+..|
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~p~~~~a~~~lg~~~~~~g~~~~A~~~~ 94 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAF 94 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccCCCCHHHHhhhchHHHHHHHHHHhhhhh
Confidence 4445555555554321 11 23466678899999999999999999876 347889999999999999999999999
Q ss_pred HHHHHCCCCC-CHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC
Q 036003 315 EEMMKAQVSP-DEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS 392 (558)
Q Consensus 315 ~~m~~~g~~p-~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~ 392 (558)
++..+. .| +..++..+..++...|++++|...|+...+. .+.+......+...+.+.+..+.+..+.... ...+
T Consensus 95 ~~al~~--~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 170 (259)
T d1xnfa_ 95 DSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDK 170 (259)
T ss_dssp HHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCC
T ss_pred hHHHHH--HhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhh--ccccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccch
Confidence 999984 44 4567888889999999999999999999864 2334444444445555666555554444433 1112
Q ss_pred CHHHHHHHHHHHHh----cCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhCC
Q 036003 393 TPILWRTLLSSCSS----HNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRG 458 (558)
Q Consensus 393 ~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g 458 (558)
....+. ++..+.. .+..+.+...+.......|....+|..++.+|...|++++|.+.|++.....
T Consensus 171 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~ 239 (259)
T d1xnfa_ 171 EQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 239 (259)
T ss_dssp CSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hhhhhh-HHHHHHHHHHHHHHHHHHHHHHHHhhhcCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC
Confidence 211222 2222221 2223444444444444556666788899999999999999999999988643
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.82 E-value=1.5e-08 Score=94.61 Aligned_cols=265 Identities=8% Similarity=-0.022 Sum_probs=161.8
Q ss_pred HHHHHHHhhcCCCCCCHHHHHHHHccCCC--CCc-ccHHHHH---HHHh-------cCCCchHHHHHHHHhHHCCCCCCc
Q 036003 56 LTKLINFCTQNPTTSSMEHAHLLFDRIPE--PDI-VLFNTMA---RGYS-------RSKTPIRAIFLFVELLNSGLLPDD 122 (558)
Q Consensus 56 ~~~li~~~~~~~~~~~~~~A~~~~~~~~~--~~~-~~~~~li---~~~~-------~~g~~~~A~~~~~~m~~~g~~p~~ 122 (558)
...++....+. +..++|..++++... |+- ..|+..- ..+. ..|++++|+.+++...+...+ +.
T Consensus 32 ~~~~~~~~~~~---~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~pk-~~ 107 (334)
T d1dcea1 32 TQAVFQKRQAG---ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-SY 107 (334)
T ss_dssp HHHHHHHHHTT---CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-CH
T ss_pred HHHHHHHHhcc---cccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhCCC-cH
Confidence 34444444444 555788888887654 433 2344322 2222 234467888888888765322 44
Q ss_pred ccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHH-HHHHHHHHhCCChHHHHHHHhccCC---CCcchHHHHHH
Q 036003 123 YSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVC-TTLINLYAECSDVEAARRIFENISE---PCVVSYNAIIT 198 (558)
Q Consensus 123 ~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~-~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~ 198 (558)
..|..+..++...+.++.+++...+..+++.. +.+...+ ......+...+..++|+..++.+.+ .+..+|+.+..
T Consensus 108 ~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p~~~~a~~~l~~ 186 (334)
T d1dcea1 108 GTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSC 186 (334)
T ss_dssp HHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHH
T ss_pred HHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 45666666666664456888888888888875 3344444 3444667778888888888888876 35567778888
Q ss_pred HHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHH
Q 036003 199 AYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDD 278 (558)
Q Consensus 199 ~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 278 (558)
.+.+.|++++|...+....+. .|+. ......+...+..+++...+....... +++...+..+...+...|+.++
T Consensus 187 ~~~~~~~~~~A~~~~~~~~~~--~~~~---~~~~~~~~~l~~~~~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~ 260 (334)
T d1dcea1 187 LLPQLHPQPDSGPQGRLPENV--LLKE---LELVQNAFFTDPNDQSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELE 260 (334)
T ss_dssp HHHHHSCCCCSSSCCSSCHHH--HHHH---HHHHHHHHHHCSSCSHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHhHHh--HHHH---HHHHHHHHHhcchhHHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHH
Confidence 888888888776655544332 1211 122233444566666666666666554 2333444455666667777777
Q ss_pred HHHHHhccCCCCH---HhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCH-HHHHHHH
Q 036003 279 AVSVFDNMSGKDT---QAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDE-ITFLGLL 333 (558)
Q Consensus 279 A~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~ll 333 (558)
|...+.+..+.++ .+|..+...|...|++++|++.+++..+ +.|+. .-|..|.
T Consensus 261 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~--ldP~~~~y~~~L~ 317 (334)
T d1dcea1 261 SCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAAYLDDLR 317 (334)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHH--HCGGGHHHHHHHH
T ss_pred HHHHHHHHHhhCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCcccHHHHHHHH
Confidence 7777777665543 4556666777777777777777777776 45543 3334343
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.65 E-value=1.1e-06 Score=79.73 Aligned_cols=127 Identities=9% Similarity=-0.046 Sum_probs=57.5
Q ss_pred HHHHHHHHHhccCChHHHHHHHHHHHHhCC-----CCchhHHHHHHHHHH-hcCCHHHHHHHHhccCCC---------CH
Q 036003 227 TMLSALSSCALLGSLDLGKWIHEYIKKYGL-----DKYVKVNTALIDMHA-KCGRLDDAVSVFDNMSGK---------DT 291 (558)
Q Consensus 227 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~---------~~ 291 (558)
+|..+..+|.+.|++++|...+++..+... .....++..+...|. ..|++++|++.|++..+- -.
T Consensus 79 ~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~ 158 (290)
T d1qqea_ 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (290)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhh
Confidence 344445555555555555555554432210 001122233333342 235555555555443210 12
Q ss_pred HhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCC-----CH-HHHHHHHHHHHccCChHHHHHHHHHch
Q 036003 292 QAWSAMIVAYATHGQGHKSILMFEEMMKAQVSP-----DE-ITFLGLLYACSHTGLVDEGWNYFYSMR 353 (558)
Q Consensus 292 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-----~~-~~~~~ll~~~~~~g~~~~a~~~~~~~~ 353 (558)
.+|..+...|...|++++|+..|++........ .. ..+...+..+...|+++.|...+++..
T Consensus 159 ~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~ 226 (290)
T d1qqea_ 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQ 226 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGG
T ss_pred hHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 235555566666666666666666655432111 11 112223334445566666666666554
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.59 E-value=1.4e-07 Score=80.51 Aligned_cols=115 Identities=8% Similarity=-0.121 Sum_probs=77.2
Q ss_pred CCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHH
Q 036003 324 PDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLL 401 (558)
Q Consensus 324 p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~ 401 (558)
|+...+......+.+.|++++|+..|.+.... -+.+...|..+..+|.+.|++++|+..|++. ...| +..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~--~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITR--NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHH
Confidence 56666666777777777777777777776652 2345666777777777777777777777765 4445 456677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHh
Q 036003 402 SSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCAR 440 (558)
Q Consensus 402 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 440 (558)
.+|...|++++|+..|++++++.|.+...+...+..+..
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l~p~~~~~~~~~~~~~l~ 118 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALR 118 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHH
Confidence 777777777777777777777766555555544444433
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.57 E-value=1.6e-06 Score=72.99 Aligned_cols=141 Identities=7% Similarity=-0.040 Sum_probs=100.7
Q ss_pred HHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHH
Q 036003 267 IDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGW 346 (558)
Q Consensus 267 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~ 346 (558)
...+...|++++|++.|+.+..++..+|..+..+|...|++++|+..|++.++.. +-+...|..+..++.+.|++++|.
T Consensus 12 g~~~~~~~d~~~Al~~~~~i~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~~~A~ 90 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKYDLAI 90 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccHHHHH
Confidence 5557788999999999998888888888889999999999999999999988843 224577888888888999999998
Q ss_pred HHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCC
Q 036003 347 NYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKST-PILWRTLLSSCSSHNNLGLAKQVIERIFELDD 425 (558)
Q Consensus 347 ~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 425 (558)
..|++.... .+.+... .+...|. ....+ ..++..+..++...|++++|.+.++++++..|
T Consensus 91 ~~~~kAl~~--~~~n~~~------~~~~~~~-----------~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~ 151 (192)
T d1hh8a_ 91 KDLKEALIQ--LRGNQLI------DYKILGL-----------QFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKS 151 (192)
T ss_dssp HHHHHHHHT--TTTCSEE------ECGGGTB-----------CCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHh--CccCchH------HHHHhhh-----------hcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 888887652 2222100 0000000 00111 23555677788888888888888888888876
Q ss_pred CC
Q 036003 426 SH 427 (558)
Q Consensus 426 ~~ 427 (558)
..
T Consensus 152 ~~ 153 (192)
T d1hh8a_ 152 EP 153 (192)
T ss_dssp SG
T ss_pred Cc
Confidence 64
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.53 E-value=5.4e-07 Score=69.07 Aligned_cols=101 Identities=12% Similarity=0.012 Sum_probs=55.1
Q ss_pred HHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHH
Q 036003 334 YACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PI-KSTPILWRTLLSSCSSHNNLG 411 (558)
Q Consensus 334 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~ 411 (558)
..+...|++++|...|.+..+. -+.+...|..+..+|.+.|++++|+..+++. .. +.++..|..+..++...|+++
T Consensus 11 ~~~~~~g~~~eAi~~~~~al~~--~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 11 NKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhc--CCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCHH
Confidence 3445555666666666555542 2334455555555555666666665555554 11 234555556666666666666
Q ss_pred HHHHHHHHHHccCCCCcccHHhHHH
Q 036003 412 LAKQVIERIFELDDSHGGDYVILSN 436 (558)
Q Consensus 412 ~a~~~~~~~~~~~~~~~~~~~~l~~ 436 (558)
+|+..|+++++.+|.++..+..+..
T Consensus 89 ~A~~~~~~a~~~~p~~~~~~~~l~~ 113 (117)
T d1elwa_ 89 EAKRTYEEGLKHEANNPQLKEGLQN 113 (117)
T ss_dssp HHHHHHHHHHTTCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 6666666666666665554444433
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.53 E-value=3e-07 Score=78.42 Aligned_cols=97 Identities=10% Similarity=-0.015 Sum_probs=70.7
Q ss_pred CChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHH
Q 036003 360 PGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIK-STPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNL 437 (558)
Q Consensus 360 ~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~ 437 (558)
|+...+......|.+.|++++|+..|++. ... .+...|..+..+|.+.|++++|+..|+++++++|.++.+|..++.+
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~~~~a~~~lg~~ 81 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQC 81 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCCcHHHHHHHHHH
Confidence 55556666677777777777777777765 222 3566777777777777777777777777777777777777777777
Q ss_pred HHhcCChHHHHHHHHHHHh
Q 036003 438 CARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 438 ~~~~g~~~~A~~~~~~m~~ 456 (558)
|.+.|++++|...|++..+
T Consensus 82 ~~~l~~~~~A~~~~~~al~ 100 (201)
T d2c2la1 82 QLEMESYDEAIANLQRAYS 100 (201)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 7777777777777776654
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.52 E-value=2.2e-06 Score=77.60 Aligned_cols=117 Identities=10% Similarity=-0.060 Sum_probs=52.2
Q ss_pred cCChHHHHHHHHHchhhc---CCCC-ChhHHHHHHHHHhhcCCHHHHHHHHHhC----CCCC----CH-HHHHHHHHHHH
Q 036003 339 TGLVDEGWNYFYSMRDKY---GIVP-GIKHYGCMVDLLGRAGRLDEAYRFIDEL----PIKS----TP-ILWRTLLSSCS 405 (558)
Q Consensus 339 ~g~~~~a~~~~~~~~~~~---~~~~-~~~~~~~li~~~~~~g~~~~A~~~~~~~----~~~~----~~-~~~~~l~~~~~ 405 (558)
.|++++|.+.+++..+-. +..+ ...++..+...|...|++++|.+.|+++ +..+ .. ..+...+..+.
T Consensus 131 ~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 210 (290)
T d1qqea_ 131 LHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQL 210 (290)
T ss_dssp TCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHH
Confidence 455555555555443211 1111 1234455555666666666666666554 1011 00 12233334445
Q ss_pred hcCCHHHHHHHHHHHHccCCCCcc-----cHHhHHHHHHh--cCChHHHHHHHHHHH
Q 036003 406 SHNNLGLAKQVIERIFELDDSHGG-----DYVILSNLCAR--AGRWEDVDYLRKLMK 455 (558)
Q Consensus 406 ~~g~~~~a~~~~~~~~~~~~~~~~-----~~~~l~~~~~~--~g~~~~A~~~~~~m~ 455 (558)
..|+++.|.+.++++.+.+|.-.. .+..++.+|.. .+.+++|...|+++.
T Consensus 211 ~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 211 AATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 556666666666666666543222 22344444433 233556666555443
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.51 E-value=4.2e-07 Score=69.66 Aligned_cols=91 Identities=12% Similarity=0.103 Sum_probs=82.9
Q ss_pred HHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCCh
Q 036003 367 CMVDLLGRAGRLDEAYRFIDEL-PIK-STPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRW 444 (558)
Q Consensus 367 ~li~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 444 (558)
.-...+.+.|++++|+..|++. ... .+...|..+..++...|++++|+..++++++.+|.++..|..++.+|...|++
T Consensus 8 ~~g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~g~~~~~~~~~ 87 (117)
T d1elwa_ 8 EKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLNRF 87 (117)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhccchhhHHHHHHHHHHHccCH
Confidence 3466788999999999999997 333 46788999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHhC
Q 036003 445 EDVDYLRKLMKDR 457 (558)
Q Consensus 445 ~~A~~~~~~m~~~ 457 (558)
++|...+++..+.
T Consensus 88 ~~A~~~~~~a~~~ 100 (117)
T d1elwa_ 88 EEAKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHh
Confidence 9999999999874
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=98.48 E-value=2e-07 Score=70.96 Aligned_cols=90 Identities=13% Similarity=-0.021 Sum_probs=81.1
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCC
Q 036003 366 GCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGR 443 (558)
Q Consensus 366 ~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 443 (558)
-.+...+.+.|++++|+..|++. ...| ++..|..+..++.+.|++++|+..|+++++.+|.++.++..++.+|...|+
T Consensus 20 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 20 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHhhhcccccccchhhhhhhhhhhhhhhHHHhhcccccccccccccccchHHHHHHHHHCCC
Confidence 34677788999999999999997 3344 688999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHH
Q 036003 444 WEDVDYLRKLMK 455 (558)
Q Consensus 444 ~~~A~~~~~~m~ 455 (558)
+++|.+.+++..
T Consensus 100 ~~~A~~~l~~~l 111 (112)
T d1hxia_ 100 ANAALASLRAWL 111 (112)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 999999998763
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.44 E-value=1.4e-06 Score=71.01 Aligned_cols=117 Identities=7% Similarity=-0.075 Sum_probs=91.6
Q ss_pred HHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCC
Q 036003 332 LLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNN 409 (558)
Q Consensus 332 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~ 409 (558)
....|.+.|++++|...|++..+. -+.+...|..+..+|...|++++|...|++. ...| +...|..++.++...|+
T Consensus 16 ~gn~~~~~~~y~~A~~~~~~al~~--~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 16 QANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHhhhcccc--chhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCC
Confidence 345677888899999888888863 3446778888888999999999999999887 3334 56789999999999999
Q ss_pred HHHHHHHHHHHHccCCCCcccHHhHHHHH--HhcCChHHHHHH
Q 036003 410 LGLAKQVIERIFELDDSHGGDYVILSNLC--ARAGRWEDVDYL 450 (558)
Q Consensus 410 ~~~a~~~~~~~~~~~~~~~~~~~~l~~~~--~~~g~~~~A~~~ 450 (558)
+++|...+++++.++|.++..+..+..+. ...+.+++|...
T Consensus 94 ~~eA~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~~~a~~~ 136 (159)
T d1a17a_ 94 FRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAG 136 (159)
T ss_dssp HHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999999999999999888777766554 333446666544
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.43 E-value=2.2e-06 Score=72.14 Aligned_cols=121 Identities=7% Similarity=-0.016 Sum_probs=93.0
Q ss_pred HHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHH
Q 036003 335 ACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGL 412 (558)
Q Consensus 335 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~ 412 (558)
.+...|+++.|++.|.++. +|+..+|..+..+|...|++++|++.|++. ...| +...|..+..++.+.|++++
T Consensus 14 ~~~~~~d~~~Al~~~~~i~-----~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~ 88 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDL 88 (192)
T ss_dssp HHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHCCCHHHHHHHHHhcC-----CCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHH
Confidence 4566788888888877542 356677778888888888888888888876 3333 57788888888999999999
Q ss_pred HHHHHHHHHccCCCCc----------------ccHHhHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 036003 413 AKQVIERIFELDDSHG----------------GDYVILSNLCARAGRWEDVDYLRKLMKDRGVL 460 (558)
Q Consensus 413 a~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 460 (558)
|...|++++...+.+. .++..++.+|.+.|++++|.+.+++.......
T Consensus 89 A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 89 AIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp HHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 9999999887654432 23557888999999999999999988765443
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.38 E-value=0.00013 Score=64.57 Aligned_cols=218 Identities=12% Similarity=-0.036 Sum_probs=124.6
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHh----cCCHHHHHHHHhccCCC-CHHhHHHHHHHHHH--
Q 036003 231 ALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAK----CGRLDDAVSVFDNMSGK-DTQAWSAMIVAYAT-- 303 (558)
Q Consensus 231 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~-~~~~~~~li~~~~~-- 303 (558)
|...+.+.+++++|.++|++..+.| +...+..|..+|.. ..+...|...+...... +......+...+..
T Consensus 8 lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~~a~~~l~~~~~~~~ 84 (265)
T d1ouva_ 8 LGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQ 84 (265)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhcccccccccchhhcccccccccc
Confidence 3333334444444444444444433 22222223444433 33455555555544332 33333334333332
Q ss_pred --CCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH----ccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhh---
Q 036003 304 --HGQGHKSILMFEEMMKAQVSPDEITFLGLLYACS----HTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR--- 374 (558)
Q Consensus 304 --~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~--- 374 (558)
..+.+.|...++...+.|.. .....+...+. .......+...+..... ..+...+..|...|..
T Consensus 85 ~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~----~~~~~~~~~L~~~~~~~~~ 157 (265)
T d1ouva_ 85 GVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACD----LNDGDGCTILGSLYDAGRG 157 (265)
T ss_dssp SSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHH----TTCHHHHHHHHHHHHHTSS
T ss_pred ccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhc----ccccchhhhhhhhhccCCC
Confidence 34567777777777765532 22222222222 23455666666665544 2345566666666664
Q ss_pred -cCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHh----cCChH
Q 036003 375 -AGRLDEAYRFIDELPIKSTPILWRTLLSSCSS----HNNLGLAKQVIERIFELDDSHGGDYVILSNLCAR----AGRWE 445 (558)
Q Consensus 375 -~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~ 445 (558)
..+...+..+++......+......+...+.. ..++++|...|+++.+.+. +..+..|+.+|.+ ..+.+
T Consensus 158 ~~~~~~~~~~~~~~a~~~g~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~--~~a~~~LG~~y~~G~g~~~n~~ 235 (265)
T d1ouva_ 158 TPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEGATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEK 235 (265)
T ss_dssp SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCST
T ss_pred cccccccchhhhhccccccccccccchhhhcccCcccccchhhhhhhHhhhhcccC--HHHHHHHHHHHHcCCCCccCHH
Confidence 45666777777766334566666667666665 5689999999999988763 4677788888875 44789
Q ss_pred HHHHHHHHHHhCCCc
Q 036003 446 DVDYLRKLMKDRGVL 460 (558)
Q Consensus 446 ~A~~~~~~m~~~g~~ 460 (558)
+|.+.|++..+.|..
T Consensus 236 ~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 236 QAIENFKKGCKLGAK 250 (265)
T ss_dssp THHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHHCcCH
Confidence 999999998887764
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.35 E-value=1.4e-06 Score=70.97 Aligned_cols=93 Identities=13% Similarity=0.072 Sum_probs=83.6
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCC
Q 036003 366 GCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGR 443 (558)
Q Consensus 366 ~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 443 (558)
......|.+.|++++|+..|++. ...| +...|..+..+|...|++++|.+.|+++++++|.+..+|..++.+|...|+
T Consensus 14 ~~~gn~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~~~~a~~~~g~~~~~~g~ 93 (159)
T d1a17a_ 14 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 93 (159)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHcccchHHHHHHHHHHHHcCC
Confidence 34566788999999999999997 3334 678999999999999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHhCC
Q 036003 444 WEDVDYLRKLMKDRG 458 (558)
Q Consensus 444 ~~~A~~~~~~m~~~g 458 (558)
+++|...+++.....
T Consensus 94 ~~eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 94 FRAALRDYETVVKVK 108 (159)
T ss_dssp HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHHcC
Confidence 999999999998743
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.31 E-value=1.2e-06 Score=67.28 Aligned_cols=104 Identities=11% Similarity=-0.074 Sum_probs=81.3
Q ss_pred HHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCH---HHHHHHHHhC-CCCCCH---HHHHHHHH
Q 036003 330 LGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRL---DEAYRFIDEL-PIKSTP---ILWRTLLS 402 (558)
Q Consensus 330 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~---~~A~~~~~~~-~~~~~~---~~~~~l~~ 402 (558)
..+++.+...+++++|.+.|++... --+.+..++..+..++.+.++. ++|+.+|+++ ...|++ .+|..+..
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~--~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~ 80 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKA--AGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAV 80 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHH--HSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHH
Confidence 3567778888899999999999886 3345678888888888875554 4689999886 434433 36788999
Q ss_pred HHHhcCCHHHHHHHHHHHHccCCCCcccHHhHH
Q 036003 403 SCSSHNNLGLAKQVIERIFELDDSHGGDYVILS 435 (558)
Q Consensus 403 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~ 435 (558)
+|.+.|++++|.+.|+++++.+|.+..+...+.
T Consensus 81 ~y~~~g~~~~A~~~~~~aL~~~P~~~~A~~l~~ 113 (122)
T d1nzna_ 81 GNYRLKEYEKALKYVRGLLQTEPQNNQAKELER 113 (122)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHHHHhhhHHHHHHHHHHHHhCcCCHHHHHHHH
Confidence 999999999999999999999999876554443
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.26 E-value=8.4e-06 Score=66.90 Aligned_cols=133 Identities=11% Similarity=0.058 Sum_probs=94.6
Q ss_pred hHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHH
Q 036003 293 AWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLL 372 (558)
Q Consensus 293 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~ 372 (558)
.+......+.+.|++++|+..|++.++.. |.. .+..+.-......+. ..+|..+..+|
T Consensus 15 ~l~~~G~~~~~~~~~~~Ai~~y~~al~~~--~~~------------~~~~~~~~~~~~~~~--------~~~~~nla~~y 72 (170)
T d1p5qa1 15 IVKERGTVYFKEGKYKQALLQYKKIVSWL--EYE------------SSFSNEEAQKAQALR--------LASHLNLAMCH 72 (170)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTC------------CCCCSHHHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHh--hhc------------cccchHHHhhhchhH--------HHHHHHHHHHH
Confidence 45556667777888888888887776521 100 000001111111111 23567788899
Q ss_pred hhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHH
Q 036003 373 GRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDV 447 (558)
Q Consensus 373 ~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 447 (558)
.+.|++++|+..+++. ...| ++..|..+..++...|++++|...|+++++++|.++.+...+..+..+.+...+.
T Consensus 73 ~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~~~ 149 (170)
T d1p5qa1 73 LKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAR 149 (170)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999887 3344 7889999999999999999999999999999999999888888877666655543
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.23 E-value=1.2e-05 Score=66.04 Aligned_cols=63 Identities=10% Similarity=-0.034 Sum_probs=59.1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhC
Q 036003 395 ILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 395 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
.+|+.+..+|.+.|++++|+..++++++++|.++.+|..++.+|...|++++|...|++..+.
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 125 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQL 125 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhccccchhhhHHHHHHHHHhhhHHHHHHHHHHHHHh
Confidence 456778889999999999999999999999999999999999999999999999999999874
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.22 E-value=6.9e-06 Score=63.79 Aligned_cols=92 Identities=10% Similarity=0.115 Sum_probs=74.2
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhC-CCC-CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCccc-------HHhHH
Q 036003 365 YGCMVDLLGRAGRLDEAYRFIDEL-PIK-STPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGD-------YVILS 435 (558)
Q Consensus 365 ~~~li~~~~~~g~~~~A~~~~~~~-~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-------~~~l~ 435 (558)
+..+...|.+.|++++|++.|++. ... .+..++..+..+|.+.|++++|++.++++++++|.++.. |..++
T Consensus 7 ~k~~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg 86 (128)
T d1elra_ 7 EKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIG 86 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHH
Confidence 445677888889999999998887 223 367888889999999999999999999999988877654 44566
Q ss_pred HHHHhcCChHHHHHHHHHHHh
Q 036003 436 NLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 436 ~~~~~~g~~~~A~~~~~~m~~ 456 (558)
..+...+++++|.+.|++...
T Consensus 87 ~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 87 NSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHh
Confidence 677788899999999987754
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=98.19 E-value=1.8e-05 Score=63.60 Aligned_cols=63 Identities=10% Similarity=-0.020 Sum_probs=57.3
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhC
Q 036003 395 ILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 395 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
.+|..+..+|.+.|++++|++.++++++.+|.+..+|..++.+|...|++++|...|++..+.
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 467778889999999999999999999999999999999999999999999999999988774
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.18 E-value=4.4e-06 Score=64.00 Aligned_cols=92 Identities=7% Similarity=-0.060 Sum_probs=77.5
Q ss_pred HHHHHHHhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHccCCCC--cccHHhHHHHH
Q 036003 366 GCMVDLLGRAGRLDEAYRFIDEL-PI-KSTPILWRTLLSSCSSHN---NLGLAKQVIERIFELDDSH--GGDYVILSNLC 438 (558)
Q Consensus 366 ~~li~~~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~--~~~~~~l~~~~ 438 (558)
..+++.+...+++++|.+.|++. .. +.++.++..+..++.+.+ ++++|+.+++++++.+|.+ ..++..|+.+|
T Consensus 3 ~~l~n~~~~~~~l~~Ae~~Y~~aL~~~p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 3 EAVLNELVSVEDLLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 46788888999999999999997 33 346788888999998755 4567999999999988654 34788999999
Q ss_pred HhcCChHHHHHHHHHHHhC
Q 036003 439 ARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 439 ~~~g~~~~A~~~~~~m~~~ 457 (558)
.+.|++++|.+.|+++.+.
T Consensus 83 ~~~g~~~~A~~~~~~aL~~ 101 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQT 101 (122)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHHh
Confidence 9999999999999999884
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.09 E-value=0.003 Score=56.91 Aligned_cols=136 Identities=8% Similarity=-0.011 Sum_probs=77.8
Q ss_pred CCcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHH
Q 036003 85 PDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTT 164 (558)
Q Consensus 85 ~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ 164 (558)
+|..--..+..-|.+.|.++.|..+|..+. -|..++..+.+. ++++.|.+++... + +..+|..
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~---------d~~rl~~~~v~l--~~~~~avd~~~k~---~---~~~~~k~ 74 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVS---------NFGRLASTLVHL--GEYQAAVDGARKA---N---STRTWKE 74 (336)
T ss_dssp C----------------CTTTHHHHHHHTT---------CHHHHHHHHHTT--TCHHHHHHHHHHH---T---CHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCC---------CHHHHHHHHHhh--ccHHHHHHHHHHc---C---CHHHHHH
Confidence 454444556677778888888888887553 256677777777 7788877766533 2 5567777
Q ss_pred HHHHHHhCCChHHHHHHHhccCCCCcchHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccC
Q 036003 165 LINLYAECSDVEAARRIFENISEPCVVSYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLG 239 (558)
Q Consensus 165 ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~ 239 (558)
+...+.+......|.-+ ......+......++..|-..|.+++...+++..... -..+...++.++..|++.+
T Consensus 75 ~~~~l~~~~e~~la~i~-~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~ 147 (336)
T d1b89a_ 75 VCFACVDGKEFRLAQMC-GLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK 147 (336)
T ss_dssp HHHHHHHTTCHHHHHHT-TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC
T ss_pred HHHHHHhCcHHHHHHHH-HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC
Confidence 77788777766554322 1111234444556777788888888888888766533 2456666777777777653
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.08 E-value=0.0017 Score=56.91 Aligned_cols=114 Identities=10% Similarity=-0.105 Sum_probs=68.4
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHc----cCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhh----cCC
Q 036003 306 QGHKSILMFEEMMKAQVSPDEITFLGLLYACSH----TGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR----AGR 377 (558)
Q Consensus 306 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~ 377 (558)
....+...+......+ +...+..|...+.. ..+...+...++...+. + +......|...|.. ..+
T Consensus 125 ~~~~a~~~~~~~~~~~---~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~-g---~~~A~~~lg~~y~~g~~~~~d 197 (265)
T d1ouva_ 125 DFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEGATKN 197 (265)
T ss_dssp CHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCSSCCC
T ss_pred hhHHHHHHhhhhhccc---ccchhhhhhhhhccCCCcccccccchhhhhccccc-c---ccccccchhhhcccCcccccc
Confidence 3445555555554432 34444555555443 34555666666665542 2 44444455555544 567
Q ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHccCCC
Q 036003 378 LDEAYRFIDELPIKSTPILWRTLLSSCSS----HNNLGLAKQVIERIFELDDS 426 (558)
Q Consensus 378 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~ 426 (558)
+++|..+|++.....++..+..|...|.. ..+.++|.+.|+++.+.+..
T Consensus 198 ~~~A~~~~~~aa~~g~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~ 250 (265)
T d1ouva_ 198 FKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAK 250 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCH
T ss_pred hhhhhhhHhhhhcccCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCH
Confidence 88888888877334466677777777764 34788899999988877643
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=98.08 E-value=3.8e-05 Score=62.66 Aligned_cols=141 Identities=10% Similarity=0.011 Sum_probs=95.6
Q ss_pred HhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHH
Q 036003 292 QAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDL 371 (558)
Q Consensus 292 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 371 (558)
..+......+.+.|++.+|+..|++.... .|. ..+....-......+ ....|..+..+
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~--~~~------------~~~~~~~~~~~~~~~--------~~~~~~Nla~~ 73 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSW--LEM------------EYGLSEKESKASESF--------LLAAFLNLAMC 73 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HTT------------CCSCCHHHHHHHHHH--------HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH--HHH------------hhccchhhhhhcchh--------HHHHHHhHHHH
Confidence 34555666777777777777777665431 000 000000000111111 12356678888
Q ss_pred HhhcCCHHHHHHHHHhC-CC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHH-HH
Q 036003 372 LGRAGRLDEAYRFIDEL-PI-KSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWED-VD 448 (558)
Q Consensus 372 ~~~~g~~~~A~~~~~~~-~~-~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-A~ 448 (558)
|.+.|++++|+..+++. .. +.+...|..+..++...|++++|...|+++++++|.+..+...+..+..+.+...+ ..
T Consensus 74 ~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~~~~~~~e~~k 153 (168)
T d1kt1a1 74 YLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQIFMCQKKAKEHNERDR 153 (168)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHhHHHHHH
Confidence 99999999999999987 32 34778899999999999999999999999999999999888888877766665543 44
Q ss_pred HHHHHH
Q 036003 449 YLRKLM 454 (558)
Q Consensus 449 ~~~~~m 454 (558)
+++.+|
T Consensus 154 k~~~~~ 159 (168)
T d1kt1a1 154 RTYANM 159 (168)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 454444
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=98.02 E-value=1.9e-05 Score=64.70 Aligned_cols=132 Identities=7% Similarity=-0.047 Sum_probs=90.2
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHh
Q 036003 294 WSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLG 373 (558)
Q Consensus 294 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~ 373 (558)
+......+...|++++|+..|++..+. ............. .. --+.....|..+..+|.
T Consensus 30 ~~~~~~~~~~~~~y~~Ai~~y~~al~~------------~~~~~~~~~~~~~------~~---~~~~~~~~~~nla~~~~ 88 (169)
T d1ihga1 30 LKNIGNTFFKSQNWEMAIKKYTKVLRY------------VEGSRAAAEDADG------AK---LQPVALSCVLNIGACKL 88 (169)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH------------HHHHHHHSCHHHH------GG---GHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHh------------hhhhhhhhhhHHH------HH---hChhhHHHHHHHHHHHH
Confidence 455566777788888888888776541 0000000111100 00 00124456777888899
Q ss_pred hcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHH
Q 036003 374 RAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWED 446 (558)
Q Consensus 374 ~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 446 (558)
+.|++++|+..+++. ...| +...|..+..++...|++++|++.|+++++++|.+..++..+..+..+.....+
T Consensus 89 ~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~p~n~~~~~~l~~~~~~l~~~~~ 163 (169)
T d1ihga1 89 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKD 163 (169)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHH
T ss_pred hhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHH
Confidence 999999999999887 4444 577899999999999999999999999999999988887777766655444333
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.99 E-value=0.0011 Score=59.79 Aligned_cols=144 Identities=13% Similarity=0.126 Sum_probs=94.8
Q ss_pred CCChhHHHHHHHHhhcCCCCCCHHHHHHHHccCCCCCcccHHHHHHHHhcCCCchHHHHHHHHhHHCCCCCCcccHHHHH
Q 036003 50 QNDLNVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNSGLLPDDYSFPSLL 129 (558)
Q Consensus 50 ~~~~~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~~~~~ll 129 (558)
.|+..--..+...|.+. |.++.|..++..+. .|..++..+.+.+++..|.+++.+.. +..+|..+.
T Consensus 11 ~~n~~d~~~i~~~c~~~---~lye~A~~lY~~~~-----d~~rl~~~~v~l~~~~~avd~~~k~~------~~~~~k~~~ 76 (336)
T d1b89a_ 11 GPNNAHIQQVGDRCYDE---KMYDAAKLLYNNVS-----NFGRLASTLVHLGEYQAAVDGARKAN------STRTWKEVC 76 (336)
T ss_dssp CC-------------------CTTTHHHHHHHTT-----CHHHHHHHHHTTTCHHHHHHHHHHHT------CHHHHHHHH
T ss_pred CCCcCCHHHHHHHHHHC---CCHHHHHHHHHhCC-----CHHHHHHHHHhhccHHHHHHHHHHcC------CHHHHHHHH
Confidence 45666666677788888 99999999998765 48889999999999999999887552 567888888
Q ss_pred HHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCC---CCcchHHHHHHHHHHCCCc
Q 036003 130 KACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISE---PCVVSYNAIITAYARSSRP 206 (558)
Q Consensus 130 ~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~ 206 (558)
.+|... .....+ .+.......++.....++..|-..|.+++...+++.... .+...++.++..|++.+ .
T Consensus 77 ~~l~~~--~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~-~ 148 (336)
T d1b89a_ 77 FACVDG--KEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFK-P 148 (336)
T ss_dssp HHHHHT--TCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTC-H
T ss_pred HHHHhC--cHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhC-h
Confidence 888876 444332 222233344556667889999999999999999997643 56667889999998864 4
Q ss_pred cHHHHHHHH
Q 036003 207 NEALSLFRE 215 (558)
Q Consensus 207 ~~A~~~~~~ 215 (558)
++-.+.+..
T Consensus 149 ~kl~e~l~~ 157 (336)
T d1b89a_ 149 QKMREHLEL 157 (336)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 444444433
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.97 E-value=1.9e-05 Score=65.05 Aligned_cols=120 Identities=9% Similarity=-0.056 Sum_probs=84.3
Q ss_pred HHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhCCCCCCHHHHHHHHHHHHhcCCHH
Q 036003 332 LLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDELPIKSTPILWRTLLSSCSSHNNLG 411 (558)
Q Consensus 332 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 411 (558)
........|++++|.+.|.....-+.-.+-. .....+.+...-..+. ......+..+..++...|+++
T Consensus 17 ~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~-----------~~~~~~w~~~~r~~l~-~~~~~a~~~la~~~~~~g~~~ 84 (179)
T d2ff4a2 17 AGVHAAAAGRFEQASRHLSAALREWRGPVLD-----------DLRDFQFVEPFATALV-EDKVLAHTAKAEAEIACGRAS 84 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSSTTG-----------GGTTSTTHHHHHHHHH-HHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCcccccc-----------cCcchHHHHHHHHHHH-HHHHHHHHHHHHHHHHCCCch
Confidence 3346677888888888888887532111100 0000000111011110 012356778899999999999
Q ss_pred HHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHH-----hCCCccCC
Q 036003 412 LAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMK-----DRGVLKVP 463 (558)
Q Consensus 412 ~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~-----~~g~~~~~ 463 (558)
+|...++++++.+|.+...|..++.+|.+.|++.+|.+.|+++. +.|+.|.+
T Consensus 85 ~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~ 141 (179)
T d2ff4a2 85 AVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 141 (179)
T ss_dssp HHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCH
Confidence 99999999999999999999999999999999999999999874 46888744
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.95 E-value=3.8e-05 Score=61.52 Aligned_cols=127 Identities=8% Similarity=-0.098 Sum_probs=90.3
Q ss_pred HhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHH
Q 036003 292 QAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDL 371 (558)
Q Consensus 292 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~ 371 (558)
..+......+.+.|++.+|+..|++....- |.. ....-......... ....+|..+..+
T Consensus 18 ~~~~~~G~~~f~~~~y~~A~~~Y~~al~~~--~~~-----------~~~~~~~~~~~~~~--------~~~~~~~Nla~~ 76 (153)
T d2fbna1 18 FDIKEEGNEFFKKNEINEAIVKYKEALDFF--IHT-----------EEWDDQILLDKKKN--------IEISCNLNLATC 76 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--TTC-----------TTCCCHHHHHHHHH--------HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cch-----------hhhhhHHHHHhhhh--------HHHHHHhhHHHH
Confidence 346667778888888888888888877631 110 00000000010111 123467788899
Q ss_pred HhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHH
Q 036003 372 LGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCA 439 (558)
Q Consensus 372 ~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~ 439 (558)
|.+.|++++|++.+++. ...| +..+|..+..++...|++++|...|+++++++|.+..+...+..+..
T Consensus 77 ~~~l~~~~~Al~~~~~al~~~p~~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~n~~~~~~l~~~~~ 146 (153)
T d2fbna1 77 YNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVN 146 (153)
T ss_dssp HHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHH
T ss_pred HHHhcccchhhhhhhccccccchhhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 99999999999999987 3344 67899999999999999999999999999999999877666555443
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.94 E-value=9.6e-05 Score=60.17 Aligned_cols=63 Identities=8% Similarity=-0.014 Sum_probs=58.6
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhC
Q 036003 395 ILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 395 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
.+|..+..+|.+.|++++|+..++++++++|.+..+|..++.+|...|++++|...|++..+.
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 356668888999999999999999999999999999999999999999999999999999874
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.94 E-value=4.4e-05 Score=62.39 Aligned_cols=65 Identities=8% Similarity=-0.120 Sum_probs=60.4
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhC
Q 036003 393 TPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 393 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
....|..+..++.+.|++++|+..+.++++++|.++.+|..++.+|.+.|++++|...|++..+.
T Consensus 76 ~~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 76 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhhcccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 34567788899999999999999999999999999999999999999999999999999999874
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.86 E-value=1.7e-06 Score=84.82 Aligned_cols=110 Identities=8% Similarity=-0.081 Sum_probs=47.8
Q ss_pred HHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHH
Q 036003 327 ITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSC 404 (558)
Q Consensus 327 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~ 404 (558)
..+..+...+.+.|+.+.|...+...... . ...++..+...+...|++++|...|++. ...| +...|+.|...+
T Consensus 121 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~-~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~ 196 (497)
T d1ya0a1 121 VKSSQLGIISNKQTHTSAIVKPQSSSCSY---I-CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILA 196 (497)
T ss_dssp ----------------------CCHHHHH---H-HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHH
T ss_pred HHHHHhHHHHHhCCCHHHHHHHHHHHhCC---C-HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHH
Confidence 34444445555555555555554443321 0 1234445555666666666666666655 2233 335566666666
Q ss_pred HhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHh
Q 036003 405 SSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCAR 440 (558)
Q Consensus 405 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 440 (558)
...|+..+|...|.+++...|+.+.++..|...+.+
T Consensus 197 ~~~~~~~~A~~~y~ral~~~~~~~~a~~nL~~~~~~ 232 (497)
T d1ya0a1 197 SSKGDHLTTIFYYCRSIAVKFPFPAASTNLQKALSK 232 (497)
T ss_dssp HHTTCHHHHHHHHHHHHSSSBCCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHH
Confidence 666666666666666666666655566665555543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.86 E-value=5.1e-05 Score=57.00 Aligned_cols=88 Identities=14% Similarity=0.012 Sum_probs=51.3
Q ss_pred HHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCC
Q 036003 196 IITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGR 275 (558)
Q Consensus 196 li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 275 (558)
+...+.+.|++++|+..|++..+.. +-+...|..+..++.+.|++++|...+++..+.. +.+...+..+...|...|+
T Consensus 22 ~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~ 99 (112)
T d1hxia_ 22 EGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHN 99 (112)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhcccc-cccchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCC
Confidence 4455566666666666666665542 2245556666666666666666666666666554 3344555556666666666
Q ss_pred HHHHHHHHhc
Q 036003 276 LDDAVSVFDN 285 (558)
Q Consensus 276 ~~~A~~~~~~ 285 (558)
+++|.+.|++
T Consensus 100 ~~~A~~~l~~ 109 (112)
T d1hxia_ 100 ANAALASLRA 109 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666665554
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.60 E-value=0.00042 Score=53.22 Aligned_cols=26 Identities=8% Similarity=0.236 Sum_probs=14.8
Q ss_pred HHHHHHHHHHCCChHHHHHHHHHHHH
Q 036003 294 WSAMIVAYATHGQGHKSILMFEEMMK 319 (558)
Q Consensus 294 ~~~li~~~~~~~~~~~a~~~~~~m~~ 319 (558)
|..+...+...+++++|+..|++...
T Consensus 82 ~~~lg~~~~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 82 YARIGNSYFKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHh
Confidence 44455555556666666666665554
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.58 E-value=0.00017 Score=57.75 Aligned_cols=88 Identities=11% Similarity=-0.039 Sum_probs=63.9
Q ss_pred HHHHhhcCCHHHHHHHHHhC----CCCCC----------HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC-------
Q 036003 369 VDLLGRAGRLDEAYRFIDEL----PIKST----------PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH------- 427 (558)
Q Consensus 369 i~~~~~~g~~~~A~~~~~~~----~~~~~----------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~------- 427 (558)
...+.+.|++++|++.|++. +..|+ ..+|+.+..+|...|++++|...+++++++.|..
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 33445556666666666654 21121 3567888889999999999999999988654211
Q ss_pred ----cccHHhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 428 ----GGDYVILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 428 ----~~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
..+|..++.+|...|++++|...|++..+
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 22577889999999999999999998875
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.56 E-value=6.7e-05 Score=59.35 Aligned_cols=75 Identities=16% Similarity=0.126 Sum_probs=46.5
Q ss_pred HHHHHHHHHhC-CCCC-CHHHHHHHHHHHHhcC-----------CHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCCh
Q 036003 378 LDEAYRFIDEL-PIKS-TPILWRTLLSSCSSHN-----------NLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRW 444 (558)
Q Consensus 378 ~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~~g-----------~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 444 (558)
+++|+..|++. .+.| +..+|..+..+|...| ++++|.+.|+++++++|.+...+..|...
T Consensus 57 ~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l~P~~~~~~~~L~~~------- 129 (145)
T d1zu2a1 57 IQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSLEMT------- 129 (145)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhcccccCCCHHHHHHHHHHH-------
Confidence 34555555554 2223 3455555555554433 46889999999999999987655555444
Q ss_pred HHHHHHHHHHHhCCC
Q 036003 445 EDVDYLRKLMKDRGV 459 (558)
Q Consensus 445 ~~A~~~~~~m~~~g~ 459 (558)
.+|.+++.+..+.|+
T Consensus 130 ~ka~~~~~e~~k~~~ 144 (145)
T d1zu2a1 130 AKAPQLHAEAYKQGL 144 (145)
T ss_dssp HTHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHhc
Confidence 456666666666554
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.55 E-value=1.9e-05 Score=77.13 Aligned_cols=219 Identities=11% Similarity=0.021 Sum_probs=111.0
Q ss_pred HHHHHHHHhHHCCCCCC-cccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChH-HHHHHHHHHHHhCCChHHHHHHH
Q 036003 105 RAIFLFVELLNSGLLPD-DYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNL-YVCTTLINLYAECSDVEAARRIF 182 (558)
Q Consensus 105 ~A~~~~~~m~~~g~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~-~~~~~ll~~~~~~g~~~~A~~~~ 182 (558)
+|.+.|++..+ ++|| ...+..+-.++... +++++| +++++... |+. ..++.....+ + ..+..+.+.+
T Consensus 4 eA~q~~~qA~~--l~p~~a~a~~~la~~~~~~--~~l~ea---ye~~i~~d--p~~a~~~~~e~~Lw-~-~~y~~~ie~~ 72 (497)
T d1ya0a1 4 QSAQYLRQAEV--LKADMTDSKLGPAEVWTSR--QALQDL---YQKMLVTD--LEYALDKKVEQDLW-N-HAFKNQITTL 72 (497)
T ss_dssp HHHHHHHHHHH--HHGGGTCSSSCSSSSHHHH--HHHHHH---HHHHHHHC--HHHHHHHTHHHHHH-H-HHTHHHHHHH
T ss_pred HHHHHHHHHHH--cCCCCHHHHhhHHHHHHHH--chHHHH---HHHHHHcC--hhhHHHHhHHHHHH-H-HHHHHHHHHH
Confidence 67888888876 3554 34455555666666 677665 66666543 321 1222111111 1 1134455555
Q ss_pred hccCC----CCcchHHHHHHHH--HHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCC
Q 036003 183 ENISE----PCVVSYNAIITAY--ARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL 256 (558)
Q Consensus 183 ~~~~~----~~~~~~~~li~~~--~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 256 (558)
+...+ ++..-.......+ ...+.++.|+..+....+.. +++...+..+...+.+.|+.+.|...+.......
T Consensus 73 r~~~k~~~~~~~~~~~~~~~~~l~~a~~~Y~~ai~~l~~~~~l~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~- 150 (497)
T d1ya0a1 73 QGQAKNRANPNRSEVQANLSLFLEAASGFYTQLLQELCTVFNVD-LPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI- 150 (497)
T ss_dssp HHHHSCSSCTTTTHHHHHHHHHHHHHHHHHHHHHHHHTC--------------------------------CCHHHHHH-
T ss_pred HHhcccccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-hhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC-
Confidence 54432 2222222222222 22344555555444433321 2344566677777788888888887777665432
Q ss_pred CCchhHHHHHHHHHHhcCCHHHHHHHHhccC---CCCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036003 257 DKYVKVNTALIDMHAKCGRLDDAVSVFDNMS---GKDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLL 333 (558)
Q Consensus 257 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll 333 (558)
....+..+...+...|++++|+..|++.. ..+..+|+.+...+...|+..+|+..|.+..... +|-..++..|.
T Consensus 151 --~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~ 227 (497)
T d1ya0a1 151 --CQHCLVHLGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQ 227 (497)
T ss_dssp --HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHH
Confidence 13456668888888999999999988765 2367789999999999999999999998888753 45567777777
Q ss_pred HHHHcc
Q 036003 334 YACSHT 339 (558)
Q Consensus 334 ~~~~~~ 339 (558)
..+.+.
T Consensus 228 ~~~~~~ 233 (497)
T d1ya0a1 228 KALSKA 233 (497)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 666543
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.47 E-value=0.00024 Score=51.27 Aligned_cols=74 Identities=11% Similarity=0.031 Sum_probs=56.9
Q ss_pred hHHHHHHHHHhhcCCHHHHHHHHHhC----C----CCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHh
Q 036003 363 KHYGCMVDLLGRAGRLDEAYRFIDEL----P----IKST-PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVI 433 (558)
Q Consensus 363 ~~~~~li~~~~~~g~~~~A~~~~~~~----~----~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 433 (558)
..+-.+...+.+.|++++|...|++. + ..++ ..+++.+..++.+.|++++|+..++++++++|.++.++..
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~P~~~~a~~N 85 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRANGN 85 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhCcCCHHHHHH
Confidence 34446677778888888888877765 1 1122 4678889999999999999999999999999999887776
Q ss_pred HHH
Q 036003 434 LSN 436 (558)
Q Consensus 434 l~~ 436 (558)
+..
T Consensus 86 l~~ 88 (95)
T d1tjca_ 86 LKY 88 (95)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=97.36 E-value=0.00024 Score=62.21 Aligned_cols=128 Identities=11% Similarity=-0.007 Sum_probs=88.6
Q ss_pred HHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCC-hhHHHHHHHHHhhcCCHH
Q 036003 301 YATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPG-IKHYGCMVDLLGRAGRLD 379 (558)
Q Consensus 301 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~-~~~~~~li~~~~~~g~~~ 379 (558)
..+.|++++|+..+++.++.. +-|...+..+...++..|++++|.+.|+...+. .|+ ...+..+...+...+..+
T Consensus 6 aL~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l---~P~~~~~~~~l~~ll~a~~~~~ 81 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKAAQARK 81 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHhccccH
Confidence 345789999999999998853 236688889999999999999999999998853 343 444555555554444444
Q ss_pred HHHHHHHhC--CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHH
Q 036003 380 EAYRFIDEL--PIKST-PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYV 432 (558)
Q Consensus 380 ~A~~~~~~~--~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 432 (558)
++..-.... ...|+ ...+......+...|+.++|.++++++.+..|..+..++
T Consensus 82 ~a~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~~p~~~~~~~ 137 (264)
T d1zbpa1 82 DFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGFLAN 137 (264)
T ss_dssp HHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCEEET
T ss_pred HHHHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCCcccc
Confidence 443322221 11232 234444566678889999999999999999888766554
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=97.26 E-value=0.0016 Score=51.86 Aligned_cols=92 Identities=12% Similarity=0.021 Sum_probs=57.5
Q ss_pred HHccCChHHHHHHHHHchhhcCCCCC----------hhHHHHHHHHHhhcCCHHHHHHHHHhC--------CCCCC----
Q 036003 336 CSHTGLVDEGWNYFYSMRDKYGIVPG----------IKHYGCMVDLLGRAGRLDEAYRFIDEL--------PIKST---- 393 (558)
Q Consensus 336 ~~~~g~~~~a~~~~~~~~~~~~~~~~----------~~~~~~li~~~~~~g~~~~A~~~~~~~--------~~~~~---- 393 (558)
+...|++++|++.|++..+...-.|+ ...|+.+..+|.+.|++++|.+.+++. ...++
T Consensus 19 ~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 98 (156)
T d2hr2a1 19 QLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKL 98 (156)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccccch
Confidence 33445555555555555442211111 245666677777777777776666553 11222
Q ss_pred -HHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC
Q 036003 394 -PILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH 427 (558)
Q Consensus 394 -~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 427 (558)
...++.+..+|...|++++|+..|++++++.|..
T Consensus 99 ~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~l~~~~ 133 (156)
T d2hr2a1 99 WISAVYSRALALDGLGRGAEAMPEFKKVVEMIEER 133 (156)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred hHHHHhhhHHHHHHHHHHHHHHHHHHHHHHhhHHh
Confidence 2356778899999999999999999999876543
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.24 E-value=0.0035 Score=50.93 Aligned_cols=123 Identities=13% Similarity=0.061 Sum_probs=79.3
Q ss_pred HHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcCCHHHHHHHHhccCCCCHHhHHHHHHHHHHCCChHHH
Q 036003 231 ALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALIDMHAKCGRLDDAVSVFDNMSGKDTQAWSAMIVAYATHGQGHKS 310 (558)
Q Consensus 231 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 310 (558)
........|++++|...|.......-.+-. ......+-+...-..+.......+..+...+...|++++|
T Consensus 17 ~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l----------~~~~~~~w~~~~r~~l~~~~~~a~~~la~~~~~~g~~~~A 86 (179)
T d2ff4a2 17 AGVHAAAAGRFEQASRHLSAALREWRGPVL----------DDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAV 86 (179)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCSSTT----------GGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhCccccc----------ccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCchHH
Confidence 345667788888888888887764211000 0000000111111112222345677788888999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchh----hcCCCCChhH
Q 036003 311 ILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRD----KYGIVPGIKH 364 (558)
Q Consensus 311 ~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~~~ 364 (558)
+..++++.+.. +-+...|..++.++...|+..+|.+.|+++.. ..|+.|+..+
T Consensus 87 l~~~~~al~~~-P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l 143 (179)
T d2ff4a2 87 IAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 143 (179)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHH
Confidence 99999988842 23678888999999999999999988888744 2478887655
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=97.20 E-value=0.00013 Score=57.55 Aligned_cols=85 Identities=7% Similarity=-0.051 Sum_probs=60.8
Q ss_pred hhcCCHHHHHHHHHhC-CCCC-CHHHHHHHHHHHHh----------cCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHh
Q 036003 373 GRAGRLDEAYRFIDEL-PIKS-TPILWRTLLSSCSS----------HNNLGLAKQVIERIFELDDSHGGDYVILSNLCAR 440 (558)
Q Consensus 373 ~~~g~~~~A~~~~~~~-~~~~-~~~~~~~l~~~~~~----------~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~ 440 (558)
.+.+.+++|++.|+.. ...| ++.++..+..++.. .+.+++|+..|+++++++|.++.+|..++.+|..
T Consensus 8 ~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~~~~~~~Ai~~~~kAl~l~P~~~~a~~~lG~~y~~ 87 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTS 87 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHHHHHHHhcchhhHHHhhHHHHHHH
Confidence 3445566666666665 2223 44555555555543 3456889999999999999999999999999987
Q ss_pred cCC-----------hHHHHHHHHHHHhC
Q 036003 441 AGR-----------WEDVDYLRKLMKDR 457 (558)
Q Consensus 441 ~g~-----------~~~A~~~~~~m~~~ 457 (558)
.|+ +++|.+.|++..+.
T Consensus 88 ~g~~~~~~~~~~~~~~~A~~~~~kal~l 115 (145)
T d1zu2a1 88 FAFLTPDETEAKHNFDLATQFFQQAVDE 115 (145)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred cccchhhHHHHHHhHHHhhhhhhccccc
Confidence 653 67888888888763
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.09 E-value=0.0021 Score=45.94 Aligned_cols=63 Identities=13% Similarity=-0.045 Sum_probs=53.8
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCC-------cccHHhHHHHHHhcCChHHHHHHHHHHHhC
Q 036003 395 ILWRTLLSSCSSHNNLGLAKQVIERIFELDDSH-------GGDYVILSNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 395 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
..+..++..+.+.|++++|...|++++++.|.+ ..+|..|+.+|.+.|++++|.+.++++.+.
T Consensus 6 ddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l 75 (95)
T d1tjca_ 6 EDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (95)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHh
Confidence 345568889999999999999999999876443 346888999999999999999999999874
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.92 E-value=0.00029 Score=61.70 Aligned_cols=120 Identities=11% Similarity=0.019 Sum_probs=84.7
Q ss_pred HHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHHHhC-CCCCC-HHHHHHHHHHHHhcCCHHHH
Q 036003 336 CSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFIDEL-PIKST-PILWRTLLSSCSSHNNLGLA 413 (558)
Q Consensus 336 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~~-~~~~~-~~~~~~l~~~~~~~g~~~~a 413 (558)
..+.|++++|...+++..+ .-+.+...+..+...|+..|++++|.+.|+.. ...|+ ...+..+...+...+..+++
T Consensus 6 aL~~G~l~eAl~~l~~al~--~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l~P~~~~~~~~l~~ll~a~~~~~~a 83 (264)
T d1zbpa1 6 ALSEGQLQQALELLIEAIK--ASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEYLPGASQLRHLVKAAQARKDF 83 (264)
T ss_dssp HTTTTCHHHHHHHHHHHHH--TCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhccccHHH
Confidence 3467999999999999987 55667899999999999999999999999988 44554 45555555554433333333
Q ss_pred HHHHHHHHccC-CCCcccHHhHHHHHHhcCChHHHHHHHHHHHhC
Q 036003 414 KQVIERIFELD-DSHGGDYVILSNLCARAGRWEDVDYLRKLMKDR 457 (558)
Q Consensus 414 ~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~ 457 (558)
..-........ |+....+...+..+.+.|++++|.+.+++..+.
T Consensus 84 ~~~~~~~~~~~~p~~~~~~l~~a~~~~~~gd~~~A~~~~~~a~e~ 128 (264)
T d1zbpa1 84 AQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 128 (264)
T ss_dssp TTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhhhhcccCchHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhc
Confidence 22222211122 333344556677888999999999999988764
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=96.40 E-value=0.39 Score=44.84 Aligned_cols=114 Identities=11% Similarity=0.079 Sum_probs=59.0
Q ss_pred CChHHHHHHHHHHHHCCCCCCHHHHH----HHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHH
Q 036003 305 GQGHKSILMFEEMMKAQVSPDEITFL----GLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDE 380 (558)
Q Consensus 305 ~~~~~a~~~~~~m~~~g~~p~~~~~~----~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 380 (558)
.+.+.+..++......... +..... .+.......+..+.+...+...... ..+.....-.+......+++..
T Consensus 228 ~d~~~a~~~l~~~~~~~~~-~~~~~~~~~~~~a~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~w~~~~al~~~~~~~ 303 (450)
T d1qsaa1 228 QDAENARLMIPSLAQAQQL-NEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRG 303 (450)
T ss_dssp HCHHHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHH
T ss_pred cChhHHHHHHHhhhhcccc-cHHHHHHHHHHHHHHHHHcCchHHHHHHHHhhccc---ccchHHHHHHHHHHHHcCChHH
Confidence 4566666666665543211 221111 1112223345556666666555432 2233333444445556677777
Q ss_pred HHHHHHhCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHc
Q 036003 381 AYRFIDELPIKST--PILWRTLLSSCSSHNNLGLAKQVIERIFE 422 (558)
Q Consensus 381 A~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 422 (558)
+...+..++..+. ..-..=+..++...|+.+.|...|..+..
T Consensus 304 ~~~~~~~l~~~~~~~~r~~YW~gRa~~~~G~~~~A~~~~~~~a~ 347 (450)
T d1qsaa1 304 LNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (450)
T ss_dssp HHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHhcCcccccHHHHHHHHHHHHHHcCChhhHHHHHHHHhc
Confidence 7777777743331 22223355666777777777777777653
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=96.10 E-value=0.15 Score=37.08 Aligned_cols=141 Identities=9% Similarity=0.020 Sum_probs=98.5
Q ss_pred HHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhhcCCHHH
Q 036003 301 YATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGRAGRLDE 380 (558)
Q Consensus 301 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 380 (558)
+.-.|..++..+++.+.... .+..-|+.+|--....-+-+...+.++.+-+.+.+.| ++++..
T Consensus 12 ~ildG~ve~Gveii~k~~~s---s~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~--------------C~Nlk~ 74 (161)
T d1wy6a1 12 FLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDK--------------CQNLKS 74 (161)
T ss_dssp HHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGG--------------CSCTHH
T ss_pred HHHhhhHHhHHHHHHHHccc---CCccccceeeeecccccchHHHHHHHHHHhhhcCchh--------------hhcHHH
Confidence 34567778888888877763 3566677777666666777777777777765433333 333333
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHhcCChHHHHHHHHHHHhCCCc
Q 036003 381 AYRFIDELPIKSTPILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGDYVILSNLCARAGRWEDVDYLRKLMKDRGVL 460 (558)
Q Consensus 381 A~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~~~g~~ 460 (558)
....+-.+. .+...+...++....+|+-+.-.++++.+++.+..++.....++.+|.+.|...++.+++.+.-++|++
T Consensus 75 vv~C~~~~n--~~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 75 VVECGVINN--TLNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHTT--CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHhc--chHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 333333332 234455666778888899999999999888877777888888999999999999999999998888875
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=95.28 E-value=0.33 Score=35.22 Aligned_cols=64 Identities=11% Similarity=0.062 Sum_probs=46.2
Q ss_pred hHHHHHHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCC
Q 036003 192 SYNAIITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGL 256 (558)
Q Consensus 192 ~~~~li~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 256 (558)
..+.-+....++|+-+.-.++++.+.+.+ +|++.....+..+|.+.|+..++..++.++.+.|+
T Consensus 88 ~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~ 151 (161)
T d1wy6a1 88 HVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGE 151 (161)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhH
Confidence 34455666777788777777877766643 67777777888888888888888888777777764
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=95.01 E-value=0.093 Score=39.61 Aligned_cols=81 Identities=12% Similarity=0.021 Sum_probs=43.0
Q ss_pred CHHHHHHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHccCCCCcccHHhHHHHHHh----cCChHHHH
Q 036003 377 RLDEAYRFIDELPIKSTPILWRTLLSSCSS----HNNLGLAKQVIERIFELDDSHGGDYVILSNLCAR----AGRWEDVD 448 (558)
Q Consensus 377 ~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~ 448 (558)
+.++|.+++++.-...++.....|...|.. ..+.++|.++|+++.+.+. +.....|..+|.. ..+.++|.
T Consensus 38 ~~~~a~~~~~~aa~~g~~~a~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~~g~--~~a~~~Lg~~y~~G~gv~~d~~~A~ 115 (133)
T d1klxa_ 38 NKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLND--QDGCLILGYKQYAGKGVVKNEKQAV 115 (133)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHTSSSCCCHHHHH
T ss_pred CHHHHHHHHhhhhcccchhhhhhHHHhhhhccccchhhHHHHHHHhhhhccCc--chHHHHHHHHHHcCCccCCCHHHHH
Confidence 444555555444212344444444444432 3456667777777666543 2345555555554 34666777
Q ss_pred HHHHHHHhCCC
Q 036003 449 YLRKLMKDRGV 459 (558)
Q Consensus 449 ~~~~~m~~~g~ 459 (558)
++|++..+.|.
T Consensus 116 ~~~~~Aa~~G~ 126 (133)
T d1klxa_ 116 KTFEKACRLGS 126 (133)
T ss_dssp HHHHHHHHTTC
T ss_pred HHHHHHHHCCC
Confidence 77777666654
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.84 E-value=0.18 Score=37.92 Aligned_cols=112 Identities=12% Similarity=0.001 Sum_probs=74.8
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHHHHhh----cCCHHHH
Q 036003 306 QGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVDLLGR----AGRLDEA 381 (558)
Q Consensus 306 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~~~~~----~g~~~~A 381 (558)
++++|+.+|++..+.|.. . ....|. .....+.++|...+++..+. + +......|...|.. ..+.++|
T Consensus 8 d~~~A~~~~~kaa~~g~~-~--a~~~l~--~~~~~~~~~a~~~~~~aa~~-g---~~~a~~~Lg~~y~~g~~~~~d~~~A 78 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEM-F--GCLSLV--SNSQINKQKLFQYLSKACEL-N---SGNGCRFLGDFYENGKYVKKDLRKA 78 (133)
T ss_dssp HHHHHHHHHHHHHHTTCT-T--HHHHHH--TCTTSCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred CHHHHHHHHHHHHHCCCh-h--hhhhhc--cccccCHHHHHHHHhhhhcc-c---chhhhhhHHHhhhhccccchhhHHH
Confidence 567788888887777632 2 222222 23446778888888887763 3 44555556665553 4578899
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHccCCC
Q 036003 382 YRFIDELPIKSTPILWRTLLSSCSS----HNNLGLAKQVIERIFELDDS 426 (558)
Q Consensus 382 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~ 426 (558)
.++|++.-...++.....|...|.. ..+.++|.++|+++.+.+.+
T Consensus 79 ~~~~~~aa~~g~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~ 127 (133)
T d1klxa_ 79 AQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 127 (133)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhhhhccCcchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCH
Confidence 9999887334566666677777665 45889999999998887743
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=94.76 E-value=0.11 Score=38.04 Aligned_cols=64 Identities=11% Similarity=0.077 Sum_probs=36.7
Q ss_pred CHHHHHHHHHHHHhcC---CHHHHHHHHHHHHccCCCCc-ccHHhHHHHHHhcCChHHHHHHHHHHHh
Q 036003 393 TPILWRTLLSSCSSHN---NLGLAKQVIERIFELDDSHG-GDYVILSNLCARAGRWEDVDYLRKLMKD 456 (558)
Q Consensus 393 ~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~A~~~~~~m~~ 456 (558)
...+--....++.++. +.++++.+++++.+.+|.+. ..+..|+.+|.+.|++++|.+.++++.+
T Consensus 34 s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ 101 (124)
T d2pqrb1 34 TIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 101 (124)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHc
Confidence 3334444444554432 34566666666666555443 4555666666666666666666666655
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=91.82 E-value=0.55 Score=34.24 Aligned_cols=71 Identities=11% Similarity=0.079 Sum_probs=50.9
Q ss_pred CChhHHHHHHHHHhhcC---CHHHHHHHHHhC-CCCC-CH-HHHHHHHHHHHhcCCHHHHHHHHHHHHccCCCCccc
Q 036003 360 PGIKHYGCMVDLLGRAG---RLDEAYRFIDEL-PIKS-TP-ILWRTLLSSCSSHNNLGLAKQVIERIFELDDSHGGD 430 (558)
Q Consensus 360 ~~~~~~~~li~~~~~~g---~~~~A~~~~~~~-~~~~-~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 430 (558)
++..+--....++.+.. +.++++.+|+++ ...| +. ..+..|.-+|.+.|++++|.+.++++++.+|.+..+
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ieP~n~qA 109 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 109 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccCCCcHHH
Confidence 44555555666666554 445778888776 2233 33 567778888999999999999999999999987543
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=90.38 E-value=6.5 Score=35.98 Aligned_cols=372 Identities=10% Similarity=-0.015 Sum_probs=204.1
Q ss_pred HHHHHHHHHhCCCCCh-hHHHHHHHHhhcCCCCCCHHHHHHHHccCCCCCcccHHHHHHHHhcCCCchHHHHHHHHhHHC
Q 036003 38 KQIHAVTIKTHLQNDL-NVLTKLINFCTQNPTTSSMEHAHLLFDRIPEPDIVLFNTMARGYSRSKTPIRAIFLFVELLNS 116 (558)
Q Consensus 38 ~~~~~~~~~~g~~~~~-~~~~~li~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~~~m~~~ 116 (558)
..+...+.+..-.|-. ..-...+..+.+. ++++.....+..-+ .+...-.....+....|+..+|...+..+-..
T Consensus 56 ~~i~~Fl~~~p~~P~~~~lr~~~l~~L~~~---~~w~~~~~~~~~~p-~~~~~~c~~~~A~~~~g~~~~a~~~~~~lW~~ 131 (450)
T d1qsaa1 56 VTVTNFVRANPTLPPARTLQSRFVNELARR---EDWRGLLAFSPEKP-GTTEAQCNYYYAKWNTGQSEEAWQGAKELWLT 131 (450)
T ss_dssp HHHHHHHHHCTTCHHHHHHHHHHHHHHHHT---TCHHHHHHHCCSCC-SSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSC
T ss_pred HHHHHHHHHCCCChhHHHHHHHHHHHHHhc---cCHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc
Confidence 4555555444322221 2233345566666 77777666554322 23444445666777778877777777766554
Q ss_pred CCCCCcccHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCChHHHHHHHhccCCCCcchHHHH
Q 036003 117 GLLPDDYSFPSLLKACACVGAEALEEGKQLHCFAIKLGLNSNLYVCTTLINLYAECSDVEAARRIFENISEPCVVSYNAI 196 (558)
Q Consensus 117 g~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~g~~~~~~~~~~ll~~~~~~g~~~~A~~~~~~~~~~~~~~~~~l 196 (558)
|.. .. +....++..+.+.| ..+...+-.-+......|+...|..+...+..........+
T Consensus 132 ~~~-~p------------------~~c~~l~~~~~~~~-~lt~~~~~~R~~~~l~~~~~~~a~~l~~~l~~~~~~~~~a~ 191 (450)
T d1qsaa1 132 GKS-QP------------------NACDKLFSVWRASG-KQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAI 191 (450)
T ss_dssp SSC-CC------------------THHHHHHHHHHHTT-CSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHH
T ss_pred CCC-Cc------------------hHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCChhhHHHHHhhCChhHHHHHHHH
Confidence 322 11 22223344344434 23333333455566677888888888887765444444444
Q ss_pred HHHHHHCCCccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhc--cCChHHHHHHHHHHHHhCCCCchhHH---HHHHHHHH
Q 036003 197 ITAYARSSRPNEALSLFRELQERNLKPTDVTMLSALSSCAL--LGSLDLGKWIHEYIKKYGLDKYVKVN---TALIDMHA 271 (558)
Q Consensus 197 i~~~~~~g~~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~ 271 (558)
+.... ++..+...... ..++......+..++.+ ..+.+.+..++............... ..+...+.
T Consensus 192 ~~l~~---~p~~~~~~~~~-----~~~~~~~~~~~~~~l~rla~~d~~~a~~~l~~~~~~~~~~~~~~~~~~~~~a~~~~ 263 (450)
T d1qsaa1 192 ISLAN---NPNTVLTFART-----TGATDFTRQMAAVAFASVARQDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLM 263 (450)
T ss_dssp HHHHH---CGGGHHHHHHH-----SCCCHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSC
T ss_pred HHHHh---ChHhHHHHHhc-----CCCChhhhHHHHHHHHHHhccChhHHHHHHHhhhhcccccHHHHHHHHHHHHHHHH
Confidence 44432 33333333222 12333333333333332 34777888888877655322222111 11222233
Q ss_pred hcCCHHHHHHHHhccCC--CCHHhHHHHHHHHHHCCChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHH
Q 036003 272 KCGRLDDAVSVFDNMSG--KDTQAWSAMIVAYATHGQGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYF 349 (558)
Q Consensus 272 ~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~ 349 (558)
..+..+.+..++..... .+.....-.+......+++..+...+..|... ..-...-.--+..++...|+.+.|...|
T Consensus 264 ~~~~~~~a~~~~~~~~~~~~~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~-~~~~~r~~YW~gRa~~~~G~~~~A~~~~ 342 (450)
T d1qsaa1 264 GNDVTDEQAKWRDDAIMRSQSTSLIERRVRMALGTGDRRGLNTWLARLPME-AKEKDEWRYWQADLLLERGREAEAKEIL 342 (450)
T ss_dssp STTCCHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTT-GGGSHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HcCchHHHHHHHHhhcccccchHHHHHHHHHHHHcCChHHHHHHHHhcCcc-cccHHHHHHHHHHHHHHcCChhhHHHHH
Confidence 45666777776655432 23333333444556678899999888887542 2223455567778889999999999999
Q ss_pred HHchhhcCCCCChhHHHHHHHHHhhcCCHHHHHHHH-HhCCCCCCH-HH---HHHHHHHHHhcCCHHHHHHHHHHHHccC
Q 036003 350 YSMRDKYGIVPGIKHYGCMVDLLGRAGRLDEAYRFI-DELPIKSTP-IL---WRTLLSSCSSHNNLGLAKQVIERIFELD 424 (558)
Q Consensus 350 ~~~~~~~~~~~~~~~~~~li~~~~~~g~~~~A~~~~-~~~~~~~~~-~~---~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 424 (558)
..+.. .++ .|..|...-. |..- .+- ...+..+.. .. -..-+..+...|....|.+.|..+....
T Consensus 343 ~~~a~----~~~--fYG~LAa~~L--g~~~---~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~~ 411 (450)
T d1qsaa1 343 HQLMQ----QRG--FYPMVAAQRI--GEEY---ELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSK 411 (450)
T ss_dssp HHHHT----SCS--HHHHHHHHHT--TCCC---CCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhc----CCC--hHHHHHHHHc--CCCC---CCCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhCC
Confidence 98864 133 4554443222 2100 000 000111111 11 1123456778899999999999887543
Q ss_pred CCCcccHHhHHHHHHhcCChHHHHHHHHHHH
Q 036003 425 DSHGGDYVILSNLCARAGRWEDVDYLRKLMK 455 (558)
Q Consensus 425 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~m~ 455 (558)
++.-...++....+.|.++.|.....+..
T Consensus 412 --~~~~~~~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 412 --SKTEQAQLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp --CHHHHHHHHHHHHHTTCHHHHHHHHHHTT
T ss_pred --CHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 34567778888899999999998776653
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=86.30 E-value=1.8 Score=29.59 Aligned_cols=63 Identities=14% Similarity=0.207 Sum_probs=51.2
Q ss_pred ChHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHccCChHHHHHHHHHchhhcCCCCChhHHHHHHH
Q 036003 306 QGHKSILMFEEMMKAQVSPDEITFLGLLYACSHTGLVDEGWNYFYSMRDKYGIVPGIKHYGCMVD 370 (558)
Q Consensus 306 ~~~~a~~~~~~m~~~g~~p~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~~li~ 370 (558)
+.-++.+-++.+....+.|+.....+.+.+|-+.+++..|.++|+.++.+.+ ++...|..++.
T Consensus 21 D~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~--~~k~~y~yilq 83 (105)
T d1v54e_ 21 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAG--PHKEIYPYVIQ 83 (105)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT--TCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhc--CcHHHHHHHHH
Confidence 4557777888888888999999999999999999999999999999987544 34557766654
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=85.04 E-value=2.8 Score=28.61 Aligned_cols=61 Identities=20% Similarity=0.180 Sum_probs=46.3
Q ss_pred ccHHHHHHHHHHHCCCCCCHHHHHHHHHHHhccCChHHHHHHHHHHHHhCCCCchhHHHHHH
Q 036003 206 PNEALSLFRELQERNLKPTDVTMLSALSSCALLGSLDLGKWIHEYIKKYGLDKYVKVNTALI 267 (558)
Q Consensus 206 ~~~A~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 267 (558)
.-++.+-++.+....+.|++....+.+.+|.+.+++..|.++++-++... ..+...|..++
T Consensus 22 ~we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~-~~~k~~y~yil 82 (105)
T d1v54e_ 22 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVI 82 (105)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCcHHHHHHHH
Confidence 34566677777777888999999999999999999999999999887653 22344555444
|