Citrus Sinensis ID: 036008

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-----
Protein Sequence
MPPPNNRGTMMHHHNTMTHMTFFWGKNSEILFSGWPGTSPGMYVLALILVFVLAVLVERLSHCKLMKPGANHATAGLIQTLLHAIRVGLAFFVMLAIMSFNAFIL
Secondary Structure (PSIPRED)
cccccccccccccccccccEEEEcccEEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Secondary Structure Prediction (SSPRO)
ccccccccccHccccccEEEEEEEcccEEEEEcccccccHHHHHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccc
Coil and Loop (DISEMBL)
mpppnnrgtmmhhhntmthmtffwgknseilfsgwpgtspgMYVLALILVFVLAVLVERLShcklmkpganhATAGLIQTLLHAIRVGLAFFVMLAIMSFNAFIL
Flexible Loop (DISEMBL)
MPPPNNRGTMMHHHNTMTHMTFFWGKNSEILFSGWPGTSPGMYVLALILVFVLAVLVERLSHCKLMKPGANHATAGLIQTLLHAIRVGLAFFVMLAIMSFNAFIL
Low Complexity Region (SEG)
MPPPNNRGtmmhhhntmthmtFFWGKNSEILFSGWPGTSPGMYvlalilvfvlavlvERLSHCKLMKPGANHATAGLIQTLLHAIRVGLAFFVMLAIMSFNAFIL
Disordered region (IsUnstruct)
**************NTMTHMTFFWGKNSEILFSGWPGTSPGMYVLALILVFVLAVLVERLSHCKLMKPGANHATAGLIQTLLHAIRVGLAFFVMLAIMSFNAFI*
Disordered Region (DISOPRED)
********************TFFWGKNSEILFSGWPGTSPGMYVLALILVFVLAVLVERLSH*************GLIQTLLHAIRVGLAFFVMLAIMSFNAFIL
Disordered Region (DISEMBL)
MPPPNNRGTMMHHHNTMTHMTFFWGKNSEILFSGWPGTSPGMYVLALILVFVLAVLVERLSHCKLMKPGANHATAGLIQTLLHAIRVGLAFFVMLAIMSFNAFIL
Disordered Region (DISPRO)
************HHNTMTHMTFFWGKNSEILFSGWPGTSPGMYVLALILVFVLAVLVERLSHCKLMKPGANHATAGLIQTLLHAIRVGLAFFVMLAIMSFNAFIL
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooo
TM Helix, Signal Peptide (MEMSAT_SVM)
ooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHo
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MPPPNNRGTMMHHHNTMTHMTFFWGKNSEILFSGWPGTSPGMYVLALILVFVLAVLVERLSHCKLMKPGANHATAGLIQTLLHAIRVGLAFFVMLAIMSFNAFIL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	105	2.2.26 [Sep-21-2011]
Q8GWP3	145	Copper transporter 6 OS=A	yes	no	0.952	0.689	0.557	4e-27
Q39065	170	Copper transporter 1 OS=A	no	no	0.771	0.476	0.639	8e-24
Q9FGU8	151	Copper transporter 3 OS=A	no	no	0.866	0.602	0.505	4e-22
Q9STG2	158	Copper transporter 2 OS=A	no	no	0.771	0.512	0.560	1e-21
Q94EE4	161	Copper transporter 1 OS=O	yes	no	0.838	0.546	0.526	8e-19
Q8SAA5	145	Copper transporter 4 OS=A	no	no	0.847	0.613	0.434	3e-17
Q60EN8	151	Copper transporter 2 OS=O	no	no	0.8	0.556	0.482	2e-14
Q7XTF8	184	Copper transporter 6 OS=O	no	no	0.895	0.510	0.376	2e-07
Q5ZD08	150	Copper transporter 3 OS=O	no	no	0.238	0.166	0.84	3e-07
Q9JK41	187	High affinity copper upta	yes	no	0.990	0.556	0.316	7e-07

>sp|Q8GWP3|COPT6_ARATH Copper transporter 6 OS=Arabidopsis thaliana GN=COPT6 PE=2 SV=1

 Score =  119 bits (299), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 58/104 (55%), Positives = 80/104 (76%), Gaps = 4/104 (3%)

Query: 3   PPNNRGTMMHHHNT---MTHMTFFWGKNSEILFSGWPGTSPGMYVLALILVFVLAVLVER 59
           PP++  +M++H N+   M HMTFFWGKN+EILFSGWPGTS GMYVL LI+VF+LAV+VE 
Sbjct: 7   PPSSPSSMVNHTNSNMIMMHMTFFWGKNTEILFSGWPGTSLGMYVLCLIVVFLLAVIVEW 66

Query: 60  LSHCKLMK-PGANHATAGLIQTLLHAIRVGLAFFVMLAIMSFNA 102
           L+H  +++  G+     GL+QT ++ ++ GLA+ VMLA+MSFN 
Sbjct: 67  LAHSSILRGRGSTSRAKGLVQTAVYTLKTGLAYLVMLAVMSFNG 110

Involved in the transport of copper.
Arabidopsis thaliana (taxid: 3702)

>sp|Q39065|COPT1_ARATH Copper transporter 1 OS=Arabidopsis thaliana GN=COPT1 PE=2 SV=2

 Score =  108 bits (271), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 55/86 (63%), Positives = 66/86 (76%), Gaps = 5/86 (5%)

Query: 21  TFFWGKNSEILFSGWPGTSPGMYVLALILVFVLAVLVERLSHCKLMK----PGANHATAG 76
           TFFWGKN+E+LFSGWPGTS GMY L LI VF LAVL E L+H  L++      AN A AG
Sbjct: 45  TFFWGKNTEVLFSGWPGTSSGMYALCLIFVFFLAVLTEWLAHSSLLRGSTGDSANRA-AG 103

Query: 77  LIQTLLHAIRVGLAFFVMLAIMSFNA 102
           LIQT ++ +R+GLA+ VMLA+MSFNA
Sbjct: 104 LIQTAVYTLRIGLAYLVMLAVMSFNA 129

Copper transporter involved in copper acquisition and transport in leaves. Required for copper homeostasis and normal plant growth and development.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9FGU8|COPT3_ARATH Copper transporter 3 OS=Arabidopsis thaliana GN=COPT3 PE=2 SV=1

 Score =  103 bits (256), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 46/91 (50%), Positives = 60/91 (65%)

Query: 12  HHHNTMTHMTFFWGKNSEILFSGWPGTSPGMYVLALILVFVLAVLVERLSHCKLMKPGAN 71
           H H  M HMTFFWGK +E+LF GWPGTS  MY + L ++FV++   E LS C  MK G  
Sbjct: 24  HRHGGMMHMTFFWGKTTEVLFDGWPGTSLKMYWVCLAVIFVISAFSECLSRCGFMKSGPA 83

Query: 72  HATAGLIQTLLHAIRVGLAFFVMLAIMSFNA 102
               GL+QT ++ +R  L++ VMLA+MSFN 
Sbjct: 84  SLGGGLLQTAVYTVRAALSYLVMLAVMSFNG 114

Involved in the transport of copper.

Arabidopsis thaliana (taxid: 3702)

>sp|Q9STG2|COPT2_ARATH Copper transporter 2 OS=Arabidopsis thaliana GN=COPT2 PE=2 SV=1

 Score =  102 bits (253), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 46/82 (56%), Positives = 65/82 (79%), Gaps = 1/82 (1%)

Query: 22  FFWGKNSEILFSGWPGTSPGMYVLALILVFVLAVLVERLSHCKLMK-PGANHATAGLIQT 80
           FFWGKN+E+LFSGWPGTS GMY L LI++F+LAV+ E L+H  +++  G+ +  AGL QT
Sbjct: 34  FFWGKNTEVLFSGWPGTSSGMYALCLIVIFLLAVIAEWLAHSPILRVSGSTNRAAGLAQT 93

Query: 81  LLHAIRVGLAFFVMLAIMSFNA 102
            ++ ++ GL++ VMLA+MSFNA
Sbjct: 94  AVYTLKTGLSYLVMLAVMSFNA 115

Involved in the transport of copper.

Arabidopsis thaliana (taxid: 3702)

>sp|Q94EE4|COPT1_ORYSJ Copper transporter 1 OS=Oryza sativa subsp. japonica GN=COPT1 PE=2 SV=1

 Score = 92.4 bits (228), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 49/93 (52%), Positives = 60/93 (64%), Gaps = 5/93 (5%)

Query: 18  THMTFFWGKNSEILFSGWPGTSPGMYVLALILVFVLAVLVE-----RLSHCKLMKPGANH 72
           THMTFFWGKNSE+LF+ WPGT  GMY LALI VF LAV+VE     R   C         
Sbjct: 33  THMTFFWGKNSEVLFTMWPGTRGGMYALALIFVFALAVIVEFLGSRRADACLAALARRAP 92

Query: 73  ATAGLIQTLLHAIRVGLAFFVMLAIMSFNAFIL 105
           A  GL +  +H +RVG+A+ +MLA+MSFN  + 
Sbjct: 93  AAGGLARAAVHTVRVGVAYLLMLALMSFNGGVF 125

Involved in the transport of copper, in cooperation with SWEET11 and COPT2. Contributes to the removal of copper (Cu) from xylem, and thus to the sensitivity toward bacterial pathogens such as X.oryzae pv. oryzae (Xoo).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q8SAA5|COPT4_ARATH Copper transporter 4 OS=Arabidopsis thaliana GN=COPT4 PE=2 SV=2

 Score = 87.0 bits (214), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 40/92 (43%), Positives = 59/92 (64%), Gaps = 3/92 (3%)

Query: 13  HHNTMTHMTFFWGKNSEILFSGWPGTSPGMYVLALILVFVLAVLVERLSHC---KLMKPG 69
           H  ++ H TF+WG N ++LFSGWPG+  GMY LALI VF LA L E L+ C     +K G
Sbjct: 25  HRPSLLHPTFYWGYNCQVLFSGWPGSDRGMYALALIFVFFLAFLAEWLARCSDASSIKQG 84

Query: 70  ANHATAGLIQTLLHAIRVGLAFFVMLAIMSFN 101
           A+       +T ++ ++ G ++ V+LA++SFN
Sbjct: 85  ADKLAKVAFRTAMYTVKSGFSYLVILAVVSFN 116

Involved in the transport of copper.

Arabidopsis thaliana (taxid: 3702)

>sp|Q60EN8|COPT2_ORYSJ Copper transporter 2 OS=Oryza sativa subsp. japonica GN=COPT2 PE=1 SV=1

 Score = 77.4 bits (189), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 42/87 (48%), Positives = 59/87 (67%), Gaps = 3/87 (3%)

Query: 19  HMTFFWGKNSEILFSGWPGTSPGMYVLALILVFVLAVLVERLSHCKL---MKPGANHATA 75
           HMTFFWGKN+E+LF+ WPG   GMY LA++ +F LAVL+E   +  L   +        A
Sbjct: 24  HMTFFWGKNTEVLFTLWPGARGGMYALAILFMFALAVLLEFRGYRVLEARLARRRAPRAA 83

Query: 76  GLIQTLLHAIRVGLAFFVMLAIMSFNA 102
             ++T +HA+RVG+A+ +MLA+MSFN 
Sbjct: 84  AALRTAVHAVRVGVAYLIMLALMSFNG 110

Involved in the transport of copper, in cooperation with SWEET11 and COPT1. Contributes to the removal of copper (Cu) from xylem, and thus to the sensitivity toward bacterial pathogens such as X.oryzae pv. oryzae (Xoo).

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q7XTF8|COPT6_ORYSJ Copper transporter 6 OS=Oryza sativa subsp. japonica GN=COPT6 PE=2 SV=1

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/109 (37%), Positives = 56/109 (51%), Gaps = 15/109 (13%)

Query: 12  HHHNTMTHMTFFWGKNSEILFSGWPGT-SPGMYVLALILVFV-------LAVLVERLSH- 62
           H    M HMTFFW   + +L  GWPG    GMY L L+ V         L+VL  RL+  
Sbjct: 32  HKMAMMMHMTFFWSDRAVVLIRGWPGERGAGMYALCLLFVLALAALTEGLSVLSRRLARR 91

Query: 63  ------CKLMKPGANHATAGLIQTLLHAIRVGLAFFVMLAIMSFNAFIL 105
                     +P    A++  + T +HA R+G+A+ VMLA+MSFN  +L
Sbjct: 92  GGGAASSDGGRPAPAPASSAALLTAVHAARMGMAYLVMLAVMSFNVGVL 140

Involved in the transport of copper.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q5ZD08|COPT3_ORYSJ Copper transporter 3 OS=Oryza sativa subsp. japonica GN=COPT3 PE=2 SV=1

 Score = 53.5 bits (127), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 21/25 (84%), Positives = 23/25 (92%)

Query: 19 HMTFFWGKNSEILFSGWPGTSPGMY 43
          HMTF+WGKNSEILF+GWPG S GMY
Sbjct: 29 HMTFYWGKNSEILFTGWPGASGGMY 53

Involved in the transport of copper.

Oryza sativa subsp. japonica (taxid: 39947)

>sp|Q9JK41|COPT1_RAT High affinity copper uptake protein 1 OS=Rattus norvegicus GN=Slc31a1 PE=2 SV=1

 Score = 52.4 bits (124), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 43/136 (31%), Positives = 68/136 (50%), Gaps = 32/136 (23%)

Query: 1   MPPPNNRGTMMHH-HNTMTHMTFFWG-KNSEILFSGWPGTSPGMYVLALILVFVLAVLVE 58
           MPP  +  T   H H  M  MTF++G KN ++LFS     +PG    A + VF+LA+  E
Sbjct: 22  MPPHQHPTTSASHSHEMMMPMTFYFGFKNVDLLFSSLVINTPGEMAGAFVAVFLLAMFYE 81

Query: 59  --RLSHCKLMK-------------PGAN-------HATAG--------LIQTLLHAIRVG 88
             +++   L++             PG N       H T G        L+QT+LH I+V 
Sbjct: 82  GLKIAREGLLRKSQVSIRYNSMPVPGPNGTILMETHKTVGQQMLSFPHLLQTVLHIIQVV 141

Query: 89  LAFFVMLAIMSFNAFI 104
           +++F+ML  M++N ++
Sbjct: 142 ISYFLMLIFMTYNGYL 157

High-affinity, saturable copper transporter involved in dietary copper uptake.

Rattus norvegicus (taxid: 10116)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	105
224104365	155	copper transporter [Populus trichocarpa]	0.961	0.651	0.689	2e-33
224104361	162	copper transporter [Populus trichocarpa]	0.933	0.604	0.702	2e-28
225434748	151	PREDICTED: copper transporter 6 [Vitis v	0.961	0.668	0.650	3e-28
225440544	152	PREDICTED: copper transporter 6 [Vitis v	0.942	0.651	0.611	6e-27
297745980	160	unnamed protein product [Vitis vinifera]	0.961	0.631	0.617	8e-27
225434750	177	PREDICTED: copper transporter 1 [Vitis v	0.961	0.570	0.617	1e-26
224054587	127	copper transporter [Populus trichocarpa]	0.961	0.795	0.625	3e-26
255587211	163	copper transporter, putative [Ricinus co	0.885	0.570	0.580	6e-26
30683324	145	Ctr copper transporter family [Arabidops	0.952	0.689	0.557	2e-25
351721354	155	uncharacterized protein LOC100306175 [Gl	0.771	0.522	0.666	5e-25

>gi|224104365|ref|XP_002313412.1| copper transporter [Populus trichocarpa] gi|222849820|gb|EEE87367.1| copper transporter [Populus trichocarpa]

 Score =  145 bits (367), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 71/103 (68%), Positives = 84/103 (81%), Gaps = 2/103 (1%)

Query: 2   PPPNN--RGTMMHHHNTMTHMTFFWGKNSEILFSGWPGTSPGMYVLALILVFVLAVLVER 59
           PPP+    GT    H  MTHMTFFWGK++ ILFSGWPGTS GMYVLAL+ +FVLAVLVE 
Sbjct: 12  PPPSTPMNGTDGMDHKMMTHMTFFWGKDTLILFSGWPGTSTGMYVLALVFIFVLAVLVEW 71

Query: 60  LSHCKLMKPGANHATAGLIQTLLHAIRVGLAFFVMLAIMSFNA 102
           LSHC+L+KPG+N+  AGLIQ L+HA+RVGLA+ VMLA+MSFN 
Sbjct: 72  LSHCRLVKPGSNNVAAGLIQALMHAVRVGLAYMVMLAVMSFNG 114

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224104361|ref|XP_002313411.1| copper transporter [Populus trichocarpa] gi|118485983|gb|ABK94836.1| unknown [Populus trichocarpa] gi|222849819|gb|EEE87366.1| copper transporter [Populus trichocarpa]

 Score =  129 bits (324), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 71/101 (70%), Positives = 83/101 (82%), Gaps = 3/101 (2%)

Query: 5   NNRGTMMHHHNTMTHMTFFWGKNSEILFSGWPGTS---PGMYVLALILVFVLAVLVERLS 61
           N  GTM HH   M HMTFFWGK++EILFSGWPG+S   P MY +AL+ VFVL++LVE LS
Sbjct: 23  NMAGTMQHHEMMMMHMTFFWGKSTEILFSGWPGSSDKRPHMYFVALLFVFVLSILVEWLS 82

Query: 62  HCKLMKPGANHATAGLIQTLLHAIRVGLAFFVMLAIMSFNA 102
           HC+LMKPG+NH  AGL+QTLLHA+RVGLA+ VMLAIMSFN 
Sbjct: 83  HCQLMKPGSNHVAAGLVQTLLHALRVGLAYMVMLAIMSFNG 123

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434748|ref|XP_002280121.1| PREDICTED: copper transporter 6 [Vitis vinifera] gi|321496078|gb|ADW93916.1| copper transporter [Vitis vinifera]

 Score =  129 bits (323), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 67/103 (65%), Positives = 81/103 (78%), Gaps = 2/103 (1%)

Query: 2   PPPNNRGTM--MHHHNTMTHMTFFWGKNSEILFSGWPGTSPGMYVLALILVFVLAVLVER 59
           PPP N   M  MHH   M HMTF+WGK +EILFSGWPG   GMY LALI+VFV+ ++VE 
Sbjct: 12  PPPANSTGMSPMHHMEMMMHMTFYWGKEAEILFSGWPGARSGMYALALIVVFVMGIIVEW 71

Query: 60  LSHCKLMKPGANHATAGLIQTLLHAIRVGLAFFVMLAIMSFNA 102
           LS+C+L+KPG+ HA AGL+QTLLH IR+GLA+ VMLA+MSFN 
Sbjct: 72  LSYCRLIKPGSTHAAAGLVQTLLHTIRIGLAYMVMLALMSFNG 114

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225440544|ref|XP_002276084.1| PREDICTED: copper transporter 6 [Vitis vinifera] gi|321496072|gb|ADW93913.1| copper transporter [Vitis vinifera]

 Score =  124 bits (312), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 63/103 (61%), Positives = 78/103 (75%), Gaps = 4/103 (3%)

Query: 2   PPPNNRGTMMHHHNTMTHMTFFWGKNSEILFSGWPGTSPGMYVLALILVFVLAVLVERLS 61
           P  N  GT +H    + HMTFFWGKN+EILFSGWPGTS GMY LALILVFV+A+L+E LS
Sbjct: 16  PVANVSGTHLH----LIHMTFFWGKNAEILFSGWPGTSSGMYALALILVFVVALLLEWLS 71

Query: 62  HCKLMKPGANHATAGLIQTLLHAIRVGLAFFVMLAIMSFNAFI 104
              L+KPG ++ T GL+QT L+AIR G ++ +MLA+MSFN  I
Sbjct: 72  RSSLLKPGPHNVTTGLLQTALYAIRSGFSYMLMLAVMSFNGGI 114

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|297745980|emb|CBI16036.3| unnamed protein product [Vitis vinifera]

 Score =  124 bits (311), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 63/102 (61%), Positives = 78/102 (76%), Gaps = 1/102 (0%)

Query: 2   PPPNNRGTMMHHHNTMTHM-TFFWGKNSEILFSGWPGTSPGMYVLALILVFVLAVLVERL 60
           PP N+ G    HH  M    TF+WGK +EILFSGWPGT  GMY LALI+VFV+A++VE L
Sbjct: 17  PPANSTGMPPMHHMEMMMHMTFYWGKKAEILFSGWPGTRSGMYALALIVVFVMAIIVEWL 76

Query: 61  SHCKLMKPGANHATAGLIQTLLHAIRVGLAFFVMLAIMSFNA 102
           SH +L+KPG+ H  AG++QTLLHAIR+GL + VMLA+MSFN 
Sbjct: 77  SHFQLIKPGSTHVAAGVVQTLLHAIRMGLEYMVMLALMSFNG 118

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434750|ref|XP_002280132.1| PREDICTED: copper transporter 1 [Vitis vinifera] gi|321496076|gb|ADW93915.1| copper transporter [Vitis vinifera]

 Score =  124 bits (310), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 63/102 (61%), Positives = 78/102 (76%), Gaps = 1/102 (0%)

Query: 2   PPPNNRGTMMHHHNTMTHM-TFFWGKNSEILFSGWPGTSPGMYVLALILVFVLAVLVERL 60
           PP N+ G    HH  M    TF+WGK +EILFSGWPGT  GMY LALI+VFV+A++VE L
Sbjct: 34  PPANSTGMPPMHHMEMMMHMTFYWGKKAEILFSGWPGTRSGMYALALIVVFVMAIIVEWL 93

Query: 61  SHCKLMKPGANHATAGLIQTLLHAIRVGLAFFVMLAIMSFNA 102
           SH +L+KPG+ H  AG++QTLLHAIR+GL + VMLA+MSFN 
Sbjct: 94  SHFQLIKPGSTHVAAGVVQTLLHAIRMGLEYMVMLALMSFNG 135

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054587|ref|XP_002298334.1| copper transporter [Populus trichocarpa] gi|222845592|gb|EEE83139.1| copper transporter [Populus trichocarpa]

 Score =  122 bits (306), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 65/104 (62%), Positives = 81/104 (77%), Gaps = 3/104 (2%)

Query: 2   PPPNNRGTMMHHHNTMTHMTFFWGKNSEILFSGWPGT---SPGMYVLALILVFVLAVLVE 58
           PP NN G M HH   M HMTFFWGK++EI+FS WPG+    P MY +AL+ VFVL++LVE
Sbjct: 1   PPMNNTGMMHHHKMMMMHMTFFWGKSAEIVFSSWPGSFEKRPYMYFVALLFVFVLSILVE 60

Query: 59  RLSHCKLMKPGANHATAGLIQTLLHAIRVGLAFFVMLAIMSFNA 102
            LSHC+L+KPG+    AGL+QTLLHA+RVG+A+ VMLA+MSFN 
Sbjct: 61  WLSHCRLIKPGSGPVAAGLVQTLLHALRVGVAYMVMLAVMSFNG 104

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255587211|ref|XP_002534182.1| copper transporter, putative [Ricinus communis] gi|223525742|gb|EEF28206.1| copper transporter, putative [Ricinus communis]

 Score =  121 bits (303), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 54/93 (58%), Positives = 69/93 (74%)

Query: 13  HHNTMTHMTFFWGKNSEILFSGWPGTSPGMYVLALILVFVLAVLVERLSHCKLMKPGANH 72
           H   +THMTFFWG  +E+LF GWPG+S GMY LALI VFVLAV+VE  ++C ++KPG N 
Sbjct: 36  HRKALTHMTFFWGHTTEVLFKGWPGSSSGMYALALIFVFVLAVVVEWFNYCSIIKPGTNK 95

Query: 73  ATAGLIQTLLHAIRVGLAFFVMLAIMSFNAFIL 105
             AG  +T +HA+R GL++ VMLA+MSFN  I 
Sbjct: 96  VAAGFFRTGMHAVRTGLSYMVMLAVMSFNGGIF 128

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|30683324|ref|NP_850091.1| Ctr copper transporter family [Arabidopsis thaliana] gi|75151022|sp|Q8GWP3.1|COPT6_ARATH RecName: Full=Copper transporter 6; Short=AtCOPT6 gi|26452466|dbj|BAC43318.1| putative copper transport protein [Arabidopsis thaliana] gi|28827258|gb|AAO50473.1| putative copper transport protein [Arabidopsis thaliana] gi|330252820|gb|AEC07914.1| Ctr copper transporter family [Arabidopsis thaliana]

 Score =  119 bits (299), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 58/104 (55%), Positives = 80/104 (76%), Gaps = 4/104 (3%)

Query: 3   PPNNRGTMMHHHNT---MTHMTFFWGKNSEILFSGWPGTSPGMYVLALILVFVLAVLVER 59
           PP++  +M++H N+   M HMTFFWGKN+EILFSGWPGTS GMYVL LI+VF+LAV+VE 
Sbjct: 7   PPSSPSSMVNHTNSNMIMMHMTFFWGKNTEILFSGWPGTSLGMYVLCLIVVFLLAVIVEW 66

Query: 60  LSHCKLMK-PGANHATAGLIQTLLHAIRVGLAFFVMLAIMSFNA 102
           L+H  +++  G+     GL+QT ++ ++ GLA+ VMLA+MSFN 
Sbjct: 67  LAHSSILRGRGSTSRAKGLVQTAVYTLKTGLAYLVMLAVMSFNG 110

Source: Arabidopsis thaliana

Species: Arabidopsis thaliana

Genus: Arabidopsis

Family: Brassicaceae

Order: Brassicales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351721354|ref|NP_001238742.1| uncharacterized protein LOC100306175 [Glycine max] gi|255627769|gb|ACU14229.1| unknown [Glycine max]

 Score =  118 bits (295), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 54/81 (66%), Positives = 68/81 (83%)

Query: 22  FFWGKNSEILFSGWPGTSPGMYVLALILVFVLAVLVERLSHCKLMKPGANHATAGLIQTL 81
           FFWGK+++ILF+ WPG   GMYVLAL+ VFV+AVLVE LSH + +KPG+NH  +GLI+TL
Sbjct: 38  FFWGKDADILFNNWPGGKSGMYVLALVFVFVMAVLVELLSHTRFIKPGSNHVVSGLIKTL 97

Query: 82  LHAIRVGLAFFVMLAIMSFNA 102
           LH +RVGLA+ VMLA+MSFN 
Sbjct: 98  LHVLRVGLAYLVMLALMSFNG 118

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	105
TAIR|locus:2153306	170	COPT1 "copper transporter 1" [	0.761	0.470	0.529	3.6e-18
TAIR|locus:2102752	158	COPT2 "copper transporter 2" [	0.971	0.645	0.401	2e-17
TAIR|locus:504955951	145	COPT6 "copper transporter 6" [	0.961	0.696	0.413	8.6e-17
TAIR|locus:2153311	151	COPT3 "copper transporter 3" [	0.761	0.529	0.462	2.6e-15
UNIPROTKB|Q60EN8	151	COPT2 "Copper transporter 2" [	0.752	0.523	0.428	7.1e-13
UNIPROTKB|Q94EE4	161	COPT1 "Copper transporter 1" [	0.761	0.496	0.411	3.1e-12
TAIR|locus:504955905	145	COPT4 "copper transporter 4" [	0.761	0.551	0.337	9.4e-11
ZFIN|ZDB-GENE-040415-3	188	slc31a1 "solute carrier family	0.285	0.159	0.433	7.9e-06
UNIPROTKB|J9P9D2	178	SLC31A1 "Uncharacterized prote	0.266	0.157	0.428	1.7e-05
UNIPROTKB|O15432	143	SLC31A2 "Probable low affinity	0.247	0.181	0.5	1.9e-05

TAIR|locus:2153306 COPT1 "copper transporter 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 45/85 (52%), Positives = 56/85 (65%)

Query:    22 FFWGKNSEILFSGWPGTSPGMYXXXXXXXXXXXXXXERLSHCKLMK----PGANHATAGL 77
             FFWGKN+E+LFSGWPGTS GMY              E L+H  L++      AN A AGL
Sbjct:    46 FFWGKNTEVLFSGWPGTSSGMYALCLIFVFFLAVLTEWLAHSSLLRGSTGDSANRA-AGL 104

Query:    78 IQTLLHAIRVGLAFFVMLAIMSFNA 102
             IQT ++ +R+GLA+ VMLA+MSFNA
Sbjct:   105 IQTAVYTLRIGLAYLVMLAVMSFNA 129

GO:0005375 "copper ion transmembrane transporter activity" evidence=IEA;IGI;ISS

GO:0006825 "copper ion transport" evidence=IGI;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035434 "copper ion transmembrane transport" evidence=IEA

GO:0048235 "pollen sperm cell differentiation" evidence=IMP

GO:0048364 "root development" evidence=IMP

GO:0016020 "membrane" evidence=ISS

TAIR|locus:2102752 COPT2 "copper transporter 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 213 (80.0 bits), Expect = 2.0e-17, P = 2.0e-17
 Identities = 43/107 (40%), Positives = 59/107 (55%)

Query:     1 MPPPNNRGXXXXXXXX----XXXXXFFWGKNSEILFSGWPGTSPGMYXXXXXXXXXXXXX 56
             MPPP+                    FFWGKN+E+LFSGWPGTS GMY             
Sbjct:     9 MPPPSPSSSSMSNHTTPHMMMMHMTFFWGKNTEVLFSGWPGTSSGMYALCLIVIFLLAVI 68

Query:    57 XERLSHCKLMK-PGANHATAGLIQTLLHAIRVGLAFFVMLAIMSFNA 102
              E L+H  +++  G+ +  AGL QT ++ ++ GL++ VMLA+MSFNA
Sbjct:    69 AEWLAHSPILRVSGSTNRAAGLAQTAVYTLKTGLSYLVMLAVMSFNA 115

GO:0005375 "copper ion transmembrane transporter activity" evidence=IEA;ISS

GO:0006825 "copper ion transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035434 "copper ion transmembrane transport" evidence=IEA

GO:0015089 "high affinity copper ion transmembrane transporter activity" evidence=IGI

GO:0015678 "high-affinity copper ion transport" evidence=IGI

GO:0046658 "anchored to plasma membrane" evidence=IDA

TAIR|locus:504955951 COPT6 "copper transporter 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 207 (77.9 bits), Expect = 8.6e-17, P = 8.6e-17
 Identities = 43/104 (41%), Positives = 58/104 (55%)

Query:     1 MPP--PNNRGXXXXXXXXXXXXXFFWGKNSEILFSGWPGTSPGMYXXXXXXXXXXXXXXE 58
             MPP  P++               FFWGKN+EILFSGWPGTS GMY              E
Sbjct:     6 MPPSSPSSMVNHTNSNMIMMHMTFFWGKNTEILFSGWPGTSLGMYVLCLIVVFLLAVIVE 65

Query:    59 RLSHCKLMKP-GANHATAGLIQTLLHAIRVGLAFFVMLAIMSFN 101
              L+H  +++  G+     GL+QT ++ ++ GLA+ VMLA+MSFN
Sbjct:    66 WLAHSSILRGRGSTSRAKGLVQTAVYTLKTGLAYLVMLAVMSFN 109

GO:0005375 "copper ion transmembrane transporter activity" evidence=IEA;ISS

GO:0006825 "copper ion transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035434 "copper ion transmembrane transport" evidence=IEA

GO:0005773 "vacuole" evidence=IDA

TAIR|locus:2153311 COPT3 "copper transporter 3" [Arabidopsis thaliana (taxid:3702)]

 Score = 193 (73.0 bits), Expect = 2.6e-15, P = 2.6e-15
 Identities = 37/80 (46%), Positives = 46/80 (57%)

Query:    22 FFWGKNSEILFSGWPGTSPGMYXXXXXXXXXXXXXXERLSHCKLMKPGANHATAGLIQTL 81
             FFWGK +E+LF GWPGTS  MY              E LS C  MK G      GL+QT 
Sbjct:    34 FFWGKTTEVLFDGWPGTSLKMYWVCLAVIFVISAFSECLSRCGFMKSGPASLGGGLLQTA 93

Query:    82 LHAIRVGLAFFVMLAIMSFN 101
             ++ +R  L++ VMLA+MSFN
Sbjct:    94 VYTVRAALSYLVMLAVMSFN 113

GO:0005375 "copper ion transmembrane transporter activity" evidence=IEA;ISS

GO:0006825 "copper ion transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035434 "copper ion transmembrane transport" evidence=IEA

GO:0015089 "high affinity copper ion transmembrane transporter activity" evidence=IGI

UNIPROTKB|Q60EN8 COPT2 "Copper transporter 2" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 170 (64.9 bits), Expect = 7.1e-13, P = 7.1e-13
 Identities = 36/84 (42%), Positives = 49/84 (58%)

Query:    22 FFWGKNSEILFSGWPGTSPGMYXXXXXXXXXXXXXXE----RLSHCKLMKPGANHATAGL 77
             FFWGKN+E+LF+ WPG   GMY              E    R+   +L +  A  A A L
Sbjct:    27 FFWGKNTEVLFTLWPGARGGMYALAILFMFALAVLLEFRGYRVLEARLARRRAPRAAAAL 86

Query:    78 IQTLLHAIRVGLAFFVMLAIMSFN 101
              +T +HA+RVG+A+ +MLA+MSFN
Sbjct:    87 -RTAVHAVRVGVAYLIMLALMSFN 109

GO:0005375 "copper ion transmembrane transporter activity" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0006825 "copper ion transport" evidence=IMP

GO:0043621 "protein self-association" evidence=IDA

GO:0051119 "sugar transmembrane transporter activity" evidence=ISS

UNIPROTKB|Q94EE4 COPT1 "Copper transporter 1" [Oryza sativa Japonica Group (taxid:39947)]

 Score = 164 (62.8 bits), Expect = 3.1e-12, P = 3.1e-12
 Identities = 35/85 (41%), Positives = 44/85 (51%)

Query:    22 FFWGKNSEILFSGWPGTSPGMYXXXXXXXXXXXXXXE-----RLSHCKLMKPGANHATAG 76
             FFWGKNSE+LF+ WPGT  GMY              E     R   C         A  G
Sbjct:    37 FFWGKNSEVLFTMWPGTRGGMYALALIFVFALAVIVEFLGSRRADACLAALARRAPAAGG 96

Query:    77 LIQTLLHAIRVGLAFFVMLAIMSFN 101
             L +  +H +RVG+A+ +MLA+MSFN
Sbjct:    97 LARAAVHTVRVGVAYLLMLALMSFN 121

GO:0005375 "copper ion transmembrane transporter activity" evidence=IMP

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0005887 "integral to plasma membrane" evidence=ISS

GO:0006825 "copper ion transport" evidence=IMP

GO:0043621 "protein self-association" evidence=IDA

GO:0051119 "sugar transmembrane transporter activity" evidence=ISS

TAIR|locus:504955905 COPT4 "copper transporter 4" [Arabidopsis thaliana (taxid:3702)]

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 28/83 (33%), Positives = 45/83 (54%)

Query:    22 FFWGKNSEILFSGWPGTSPGMYXXXXXXXXXXXXXXERLSHCK---LMKPGANHATAGLI 78
             F+WG N ++LFSGWPG+  GMY              E L+ C     +K GA+       
Sbjct:    34 FYWGYNCQVLFSGWPGSDRGMYALALIFVFFLAFLAEWLARCSDASSIKQGADKLAKVAF 93

Query:    79 QTLLHAIRVGLAFFVMLAIMSFN 101
             +T ++ ++ G ++ V+LA++SFN
Sbjct:    94 RTAMYTVKSGFSYLVILAVVSFN 116

GO:0005375 "copper ion transmembrane transporter activity" evidence=IEA;ISS

GO:0006825 "copper ion transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0035434 "copper ion transmembrane transport" evidence=IEA

GO:0015089 "high affinity copper ion transmembrane transporter activity" evidence=IGI

ZFIN|ZDB-GENE-040415-3 slc31a1 "solute carrier family 31 (copper transporters), member 1" [Danio rerio (taxid:7955)]

 Score = 76 (31.8 bits), Expect = 7.9e-06, Sum P(2) = 7.9e-06
 Identities = 13/30 (43%), Positives = 23/30 (76%)

Query:    75 AGLIQTLLHAIRVGLAFFVMLAIMSFNAFI 104
             A  +QTLLH I+V +++F+ML  M++N ++
Sbjct:   129 AHFLQTLLHIIQVVVSYFLMLVFMTYNGYL 158

GO:0016021 "integral to membrane" evidence=IEA

GO:0035434 "copper ion transmembrane transport" evidence=IEA

GO:0005375 "copper ion transmembrane transporter activity" evidence=IEA;ISS

GO:0042221 "response to chemical stimulus" evidence=IDA

GO:0042539 "hypotonic salinity response" evidence=IDA

GO:0006825 "copper ion transport" evidence=ISS

GO:0046688 "response to copper ion" evidence=IDA

UNIPROTKB|J9P9D2 SLC31A1 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 75 (31.5 bits), Expect = 1.7e-05, Sum P(2) = 1.7e-05
 Identities = 12/28 (42%), Positives = 23/28 (82%)

Query:    77 LIQTLLHAIRVGLAFFVMLAIMSFNAFI 104
             L+QT+LH I+V +++F+ML  M++N ++
Sbjct:   121 LLQTVLHIIQVVISYFLMLIFMTYNGYL 148

GO:0016021 "integral to membrane" evidence=IEA

GO:0005375 "copper ion transmembrane transporter activity" evidence=IEA

UNIPROTKB|O15432 SLC31A2 "Probable low affinity copper uptake protein 2" [Homo sapiens (taxid:9606)]

 Score = 79 (32.9 bits), Expect = 1.9e-05, Sum P(2) = 1.9e-05
 Identities = 13/26 (50%), Positives = 22/26 (84%)

Query:    79 QTLLHAIRVGLAFFVMLAIMSFNAFI 104
             Q+L+H I+V + +F+MLA+MS+N +I
Sbjct:    96 QSLIHVIQVVIGYFIMLAVMSYNTWI 121

GO:0005375 "copper ion transmembrane transporter activity" evidence=IEA

GO:0006825 "copper ion transport" evidence=TAS

GO:0005887 "integral to plasma membrane" evidence=TAS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q8GWP3	COPT6_ARATH	No assigned EC number	0.5576	0.9523	0.6896	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input: eugene3.00091265 copper transporter (155 aa) (Populus trichocarpa)

Predicted Functional Partners:

Sorry, there are no predicted associations at the current settings.

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	105
pfam04145	102	pfam04145, Ctr, Ctr copper transporter family	1e-19

>gnl|CDD|217925 pfam04145, Ctr, Ctr copper transporter family

 Score = 76.0 bits (188), Expect = 1e-19
 Identities = 33/88 (37%), Positives = 52/88 (59%), Gaps = 2/88 (2%)

Query: 19  HMTFFWG-KNSEILFSGWPGTSPGMYVLALILVFVLAVLVERLSHCKLMKPGANHATAGL 77
            M F WG K++ +LFSGW  T+ GMY  + I +F+LA+L E L   +            L
Sbjct: 2   SMLFNWGTKDTCVLFSGWHITTAGMYAGSCIAIFLLAILYEGLKRVRRKL-ERMSLFQHL 60

Query: 78  IQTLLHAIRVGLAFFVMLAIMSFNAFIL 105
           I+ LLH ++VGL++ +ML +M++N  + 
Sbjct: 61  IRALLHFLQVGLSYLLMLIVMTYNGGLF 88

The redox active metal copper is an essential cofactor in critical biological processes such as respiration, iron transport, oxidative stress protection, hormone production, and pigmentation. A widely conserved family of high-affinity copper transport proteins (Ctr proteins) mediates copper uptake at the plasma membrane. A series of clustered methionine residues in the hydrophilic extracellular domain, and an MXXXM motif in the second transmembrane domain, are important for copper uptake. These methionine probably coordinate copper during the process of metal transport. Length = 102

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	105
KOG3386	155	consensus Copper transporter [Inorganic ion transp	99.97
PF04145	144	Ctr: Ctr copper transporter family; InterPro: IPR0	99.96

>KOG3386 consensus Copper transporter [Inorganic ion transport and metabolism]

Probab=99.97  E-value=1.9e-30  Score=184.39  Aligned_cols=92  Identities=36%  Similarity=0.622  Sum_probs=82.2

Q ss_pred             CCCceeeEEecCcceeEEecCCcCCChhHHHHHHHHHHHHHHHHHHHhhchhc-----c---CC--------C-C----c
Q 036008           14 HNTMTHMTFFWGKNSEILFSGWPGTSPGMYVLALILVFVLAVLVERLSHCKLM-----K---PG--------A-N----H   72 (105)
Q Consensus        14 ~~~~M~M~F~~~~~~~lLF~~W~~~s~~~~~~sci~vf~lav~~E~l~~~r~~-----~---p~--------~-~----~   72 (105)
                      .+|+|.|+|||++++++|||+|+++|.++|++||+++|++|+++|+||+.|+.     +   +.        . .    .
T Consensus        12 ~~~~m~M~f~~~~~~~iLF~~W~~~s~~~~~ls~i~iflla~l~E~Lk~~r~~~~~~~~~~~~~~~~~~~~~~~~s~~~~   91 (155)
T KOG3386|consen   12 QTMMMMMFFHFKTIETILFSSWHITSAGGMALSCIAIFLLAVLYEALKFGREKLFRWQQLRQPTGHGHEIPLSGPSKLLN   91 (155)
T ss_pred             CCCceEEEEecCceeEEEEcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCCCccccccCcchhhh
Confidence            47999999999999999999999999999999999999999999999999862     1   10        0 1    1


Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 036008           73 ATAGLIQTLLHAIRVGLAFFVMLAIMSFNAFIL  105 (105)
Q Consensus        73 ~~~~l~~~~l~~~q~~l~Y~LMLvvMTfN~~if  105 (105)
                      +..|++|+++|.+|.++||+|||++||||+|++
T Consensus        92 ~~~h~~qt~l~~~Q~~~sY~LMLifMtfN~~l~  124 (155)
T KOG3386|consen   92 SASHLIQTLLYVVQLGFSYLLMLIFMTFNGYLF  124 (155)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHH
Confidence            567999999999999999999999999999975

>PF04145 Ctr: Ctr copper transporter family; InterPro: IPR007274 The redox active metal copper is an essential cofactor in critical biological processes such as respiration, iron transport, oxidative stress protection, hormone production, and pigmentation

Probab=99.96  E-value=1e-30  Score=180.35  Aligned_cols=88  Identities=35%  Similarity=0.623  Sum_probs=45.4

Q ss_pred             eeeEEecCc-ceeEEecCCcCCChhHHHHHHHHHHHHHHHHHHHhhchhc------cC-----------C----------
Q 036008           18 THMTFFWGK-NSEILFSGWPGTSPGMYVLALILVFVLAVLVERLSHCKLM------KP-----------G----------   69 (105)
Q Consensus        18 M~M~F~~~~-~~~lLF~~W~~~s~~~~~~sci~vf~lav~~E~l~~~r~~------~p-----------~----------   69 (105)
                      |+|+|||++ ++++||++|+++|.++|+++|+++|++|+++|++|.+|..      ++           +          
T Consensus         1 M~M~F~~~~~~~~lLF~~W~~~s~~~~~~sci~~f~lav~~e~L~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   80 (144)
T PF04145_consen    1 MSMYFHWGTIRDCLLFKSWKPSSAGAYVGSCIGVFLLAVLYEFLKALRRRLERRWARRRSRRASCSSSESRSRSDASSKS   80 (144)
T ss_dssp             ------------------------HHHHHHHHHHHHHHHHTTT-------------------------------------
T ss_pred             CeeEEEcCCCccEEEeCCcEECCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccCcccCCCccccccc
Confidence            899999998 8999999999999999999999999999999999999852      00           0          


Q ss_pred             --------------CCcchHHHHHHHHHHHHHHHHHHHHHHHHhhccccC
Q 036008           70 --------------ANHATAGLIQTLLHAIRVGLAFFVMLAIMSFNAFIL  105 (105)
Q Consensus        70 --------------~~~~~~~l~~~~l~~~q~~l~Y~LMLvvMTfN~~if  105 (105)
                                    +..+..|++|+++|++|.++||+|||+|||||+|+|
T Consensus        81 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~Y~LMLvvMTyN~~l~  130 (144)
T PF04145_consen   81 SPSPSSTSPRSSRRRWFWSQHLIRALLHFVQVLLGYLLMLVVMTYNVYLF  130 (144)
T ss_dssp             ---------------------SHHHHHHHHHHHHHHHHHHHHHHTT--SS
T ss_pred             ccccccccccCCCCCccHHHHHHHHHHHHHHHHHHHHHHHhhhheeHHHH
Confidence                          002356899999999999999999999999999986

A widely conserved family of high-affinity copper transport proteins (Ctr proteins) mediates copper uptake at the plasma membrane. A series of clustered methionine residues in the hydrophilic extracellular domain, and an MXXXM motif in the second transmembrane domain, are important for copper uptake. These methionines probably coordinate copper during the process of metal transport.; GO: 0005375 copper ion transmembrane transporter activity, 0035434 copper ion transmembrane transport, 0016021 integral to membrane; PDB: 2LS4_A 2LS2_A 2LS3_A.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	105
2ls3_A	29	High affinity copper uptake protein 1; HCTR1 TMDS,	99.02
2ls2_A	26	High affinity copper uptake protein 1; HCTR1 TMDS,	97.54

>2ls3_A High affinity copper uptake protein 1; HCTR1 TMDS, oligomerization, metal transport; NMR {Homo sapiens}

Probab=99.02  E-value=9.6e-14  Score=72.69  Aligned_cols=28  Identities=43%  Similarity=0.802  Sum_probs=26.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhcc
Q 036008           75 AGLIQTLLHAIRVGLAFFVMLAIMSFNA  102 (105)
Q Consensus        75 ~~l~~~~l~~~q~~l~Y~LMLvvMTfN~  102 (105)
                      +|++|+++|++|.++||+|||++||||+
T Consensus         1 ~h~~ra~l~~~q~~~~Y~LML~~MtyN~   28 (29)
T 2ls3_A            1 KHLLQTVLHIIQVVISYFLMLIFMTYNK   28 (29)
Confidence            4789999999999999999999999997

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Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00