Citrus Sinensis ID: 036056

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140------
Protein Sequence
MPKSSFAGALTTPRVDVGIDTGNDFLNHTVDGFLKIGAVAATRAVAEDTYNIVKGGNFSRHHLEHALKKMCKEGAYWGTVAGVYVGMEYGVEKVRGTKDWKNAMIGGAFTGALVSAVGKNNRDKVVMDALTGGAIAAAAEFLSYRS
Secondary Structure (PSIPRED)
cccccccccccccccEEEEEccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHcccEEEEEEEEEEEEEEEEEEEEcccHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHcccc
Secondary Structure Prediction (SSPRO)
ccccccccccccccEEEEEEcccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHcccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHccc
Coil and Loop (DISEMBL)
mpkssfagalttprvdvgidtgndflnhTVDGFLKIGAVAATRAVAEDtynivkggnfsrHHLEHALKKMCKEGAYWGTVAGVYVGMEYGVEKVRGTKDWKNAMIGGAFTGALVSAVGKNNRDKVVMDALTGGAIAAAAEFLSYRS
Flexible Loop (DISEMBL)
mpkssfagalttprvdvGIDTGNDFLNHTVDGFLKIGAVAATRAVAEDTYNIVKGGNFSRHHLEHALKKMCKEGAYWGTVAGVYVGMEYGVEKVRGTKDWKNAMIGGAFTGALVSAVGKNNRDKVVMDALTGGAIAAAAEFLSYRS
Low Complexity Region (SEG)
MPKSSFAGALTTPRVDVGIDTGNDFLNHTVDGFLKIGAVAATRAVAEDTYNIVKGGNFSRHHLEHALKKMCKEGAYWGTVAGVYVGMEYGVEKVRGTKDWKNAMIGGAFTGALVSAVGKNNRDKVVMDALTGGaiaaaaEFLSYRS
Disordered region (IsUnstruct)
*********LTTPRVDVGIDTGNDFLNHTVDGFLKIGAVAATRAVAEDTYNIVKGGNFSRHHLEHALKKMCKEGAYWGTVAGVYVGMEYGVEKVRGTKDWKNAMIGGAFTGALVSAVGKNNRDKVVMDALTGGAIAAAAEFL****
Disordered Region (DISOPRED)
***************DVGIDTGNDFLNHTVDGFLKIGAVAATRAVAEDTYNI*************ALKKMCKEGAYWGTVAGVYVGMEYGVEKVRGTKDWKNAMIGGAFTGALVSAVGKNNRDKVVMDALTGGAIAAAAEFLSYR*
Disordered Region (DISEMBL)
********ALTTPRVDVGIDTGNDFLNHTVDGFLKIGAVAATRAVAEDTYNIVKGGNFSRHHLEHALKKMCKEGAYWGTVAGVYVGMEYGVEKVRGTKDWKNAMIGGAFTGALVSAVGKNNRDKVVMDALTGGAIAAAAEFLSYRS
Disordered Region (DISPRO)
**********TTPRVDVGIDTGNDFLNHTVDGFLKIGAVAATRAVAEDTYNIVKGGNFSRHHLEHALKKMCKEGAYWGTVAGVYVGMEYGVEKVRGTKDWKNAMIGGAFTGALVSAVGKNNRDKVVMDALTGGAIAAAAEFLSYRS
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MPKSSFAGALTTPRVDVGIDTGNDFLNHTVDGFLKIGAVAATRAVAEDTYNIVKGGNFSRHHLEHALKKMCKEGAYWGTVAGVYVGMEYGVEKVRGTKDWKNAMIGGAFTGALVSAVGKNNRDKVVMDALTGGAIAAAAEFLSYRS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	146	2.2.26 [Sep-21-2011]
Q9ZV24	148	Outer envelope pore prote	yes	no	0.979	0.966	0.573	2e-48
Q41050	146	Outer envelope pore prote	N/A	no	0.986	0.986	0.687	7e-47
Q0WMZ5	178	Outer envelope pore prote	no	no	0.856	0.702	0.331	3e-14

>sp|Q9ZV24|OP161_ARATH Outer envelope pore protein 16-1, chloroplastic OS=Arabidopsis thaliana GN=OEP161 PE=1 SV=1

 Score =  190 bits (483), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 82/143 (57%), Positives = 114/143 (79%)

Query: 1   MPKSSFAGALTTPRVDVGIDTGNDFLNHTVDGFLKIGAVAATRAVAEDTYNIVKGGNFSR 60
           MP S+F+G ++TP++ V +D GN FLN TVD FLKIGAV  T+++AEDTY  +  G+ S+
Sbjct: 1   MPSSTFSGTVSTPKLSVAVDMGNPFLNLTVDAFLKIGAVGVTKSLAEDTYKAIDKGSLSK 60

Query: 61  HHLEHALKKMCKEGAYWGTVAGVYVGMEYGVEKVRGTKDWKNAMIGGAFTGALVSAVGKN 120
             LEHALKK+CKEG YWG   GVY+G EYG+E++RG++DWKNAM+ GA TGA++SAVGK 
Sbjct: 61  STLEHALKKLCKEGVYWGAAGGVYIGTEYGIERIRGSRDWKNAMLAGAATGAVLSAVGKK 120

Query: 121 NRDKVVMDALTGGAIAAAAEFLS 143
            +D +V+DA+ GGA+A A++F++
Sbjct: 121 GKDTIVIDAILGGALATASQFVN 143

Voltage-dependent high-conductance channel with a slightly cation-selectivity; selective for amino acids but excludes triosephosphates or uncharged sugars (By similarity). Non-essential amino acid-selective channel protein and translocation pore for NADPH:protochlorophyllide oxidoreductase A (PORA) and possibly PORB. Involved in PORA precursor (pPORA) import and thus confers photoprotection onto etiolated seedlings during greening.
Arabidopsis thaliana (taxid: 3702)

>sp|Q41050|OEP16_PEA Outer envelope pore protein 16, chloroplastic OS=Pisum sativum GN=OEP16 PE=1 SV=1

 Score =  185 bits (470), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 99/144 (68%), Positives = 124/144 (86%)

Query: 1   MPKSSFAGALTTPRVDVGIDTGNDFLNHTVDGFLKIGAVAATRAVAEDTYNIVKGGNFSR 60
           MP+SSF+G+L++P++DV ID GN FLN TVDGFLKIGAVAATR+VAEDT++I++ G+ S 
Sbjct: 1   MPRSSFSGSLSSPKLDVVIDMGNPFLNLTVDGFLKIGAVAATRSVAEDTFHIIRKGSISS 60

Query: 61  HHLEHALKKMCKEGAYWGTVAGVYVGMEYGVEKVRGTKDWKNAMIGGAFTGALVSAVGKN 120
           +  E +LKKMCKEGAYWG +AGVYVGMEYGVE++RGT+DWKNAM GGA TGALVSA   N
Sbjct: 61  NDFEKSLKKMCKEGAYWGAIAGVYVGMEYGVERIRGTRDWKNAMFGGAVTGALVSAASNN 120

Query: 121 NRDKVVMDALTGGAIAAAAEFLSY 144
            +DK+ +DA+TG AIA AAEF++Y
Sbjct: 121 KKDKIAVDAITGAAIATAAEFINY 144

Voltage-dependent high-conductance channel with a slightly cation-selectivity; selective for amino acids but excludes triosephosphates or uncharged sugars. Non-essential amino acid-selective channel protein and translocation pore for NADPH:protochlorophyllide oxidoreductase A (PORA) and possibly PORB.

Pisum sativum (taxid: 3888)

>sp|Q0WMZ5|OP162_ARATH Outer envelope pore protein 16-2, chloroplastic OS=Arabidopsis thaliana GN=OEP162 PE=1 SV=1

 Score = 77.0 bits (188), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 51/154 (33%), Positives = 73/154 (47%), Gaps = 29/154 (18%)

Query: 19  IDTGNDFLNHTVDGFLKIGAVAATRAVAEDTY-NIVKGGNF------------------- 58
            D G+  LN   D F+K   V A +AV+ + Y  +V G  F                   
Sbjct: 22  FDLGHPLLNRIADSFVKAAGVGALQAVSREAYFTVVDGAGFDSNNVGPPSEITGNKKHRF 81

Query: 59  ------SRHHLEHALKKMCKEGAYWGTVAGVYVGMEYGVEKVR-GTKDWKNAMIGGAFTG 111
                 S   L+  +K   KE   WG  AG+Y G+ YG+ +VR G  DW+N+ + GA TG
Sbjct: 82  PNLRGESSKSLDALVKNTGKESLQWGLAAGLYSGITYGMTEVRGGAHDWRNSAVAGALTG 141

Query: 112 ALVSAVG--KNNRDKVVMDALTGGAIAAAAEFLS 143
           A ++     + + ++VV  ALTG AI+ AA  LS
Sbjct: 142 AAMAMTTSERTSHEQVVQSALTGAAISTAANLLS 175

Voltage-dependent high-conductance channel with a slightly cation-selectivity; selective for amino acids but excludes triosephosphates or uncharged sugars (By similarity). Non-essential amino acid-selective channel protein and translocation pore for NADPH:protochlorophyllide oxidoreductase A (PORA) and possibly PORB.

Arabidopsis thaliana (taxid: 3702)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	146
60279270	146	pom14 [Solanum tuberosum]	0.986	0.986	0.708	8e-56
115461693	146	Os05g0111200 [Oryza sativa Japonica Grou	0.986	0.986	0.652	5e-53
255584234	146	conserved hypothetical protein [Ricinus	0.986	0.986	0.680	6e-52
449521199	146	PREDICTED: outer envelope pore protein 1	0.986	0.986	0.715	9e-50
218189836	146	hypothetical protein OsI_05414 [Oryza sa	0.986	0.986	0.638	3e-49
224054740	146	predicted protein [Populus trichocarpa]	0.986	0.986	0.680	6e-49
225434951	146	PREDICTED: uncharacterized protein LOC10	0.986	0.986	0.680	2e-48
242086627	146	hypothetical protein SORBIDRAFT_09g00131	0.979	0.979	0.615	2e-48
226491624	146	amino acid selective channel protein [Ze	0.979	0.979	0.629	3e-48
351726578	143	uncharacterized protein LOC100499674 [Gl	0.965	0.986	0.687	2e-47

>gi|60279270|emb|CAA63967.1| pom14 [Solanum tuberosum]

 Score =  221 bits (563), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 102/144 (70%), Positives = 120/144 (83%)

Query: 1   MPKSSFAGALTTPRVDVGIDTGNDFLNHTVDGFLKIGAVAATRAVAEDTYNIVKGGNFSR 60
           MP+S FAG+L +P+VDV ID GN FLNHTVD FL IG VAAT+ VAE+TY +V  G+ S 
Sbjct: 1   MPRSRFAGSLISPKVDVYIDMGNPFLNHTVDAFLNIGTVAATKTVAEETYGMVTRGSVSS 60

Query: 61  HHLEHALKKMCKEGAYWGTVAGVYVGMEYGVEKVRGTKDWKNAMIGGAFTGALVSAVGKN 120
           H+ E +LKKMCKEGAYWGTVAGVY GMEYG E++RGT DWKNAMIGGA TGAL+SA   N
Sbjct: 61  HNFEKSLKKMCKEGAYWGTVAGVYAGMEYGAERIRGTNDWKNAMIGGALTGALISAACNN 120

Query: 121 NRDKVVMDALTGGAIAAAAEFLSY 144
           NRDK+VMDA+TGGA+A A+EFL+Y
Sbjct: 121 NRDKIVMDAITGGAVATASEFLNY 144

Source: Solanum tuberosum

Species: Solanum tuberosum

Genus: Solanum

Family: Solanaceae

Order: Solanales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|115461693|ref|NP_001054446.1| Os05g0111200 [Oryza sativa Japonica Group] gi|52353640|gb|AAU44206.1| putative amino acid selective channel protein [Oryza sativa Japonica Group] gi|113577997|dbj|BAF16360.1| Os05g0111200 [Oryza sativa Japonica Group] gi|215678754|dbj|BAG95191.1| unnamed protein product [Oryza sativa Japonica Group] gi|218195962|gb|EEC78389.1| hypothetical protein OsI_18168 [Oryza sativa Indica Group] gi|222629946|gb|EEE62078.1| hypothetical protein OsJ_16862 [Oryza sativa Japonica Group]

 Score =  211 bits (538), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 94/144 (65%), Positives = 119/144 (82%)

Query: 1   MPKSSFAGALTTPRVDVGIDTGNDFLNHTVDGFLKIGAVAATRAVAEDTYNIVKGGNFSR 60
           MP+  F+G++++PR+DV ID GN FLN TVDGFLKIGAV A +  AEDT++ +  G+ S+
Sbjct: 1   MPRGGFSGSISSPRIDVAIDMGNPFLNRTVDGFLKIGAVGACKVAAEDTFDCLHRGDVSK 60

Query: 61  HHLEHALKKMCKEGAYWGTVAGVYVGMEYGVEKVRGTKDWKNAMIGGAFTGALVSAVGKN 120
           H LEH LKKMCKEGAYWGTVAGVYVGMEYGVE++RG  DWKNAMIGGA +GAL+SA   N
Sbjct: 61  HKLEHMLKKMCKEGAYWGTVAGVYVGMEYGVERIRGRHDWKNAMIGGALSGALISAASNN 120

Query: 121 NRDKVVMDALTGGAIAAAAEFLSY 144
           ++DK++ DA+TGGA+A A EF++Y
Sbjct: 121 HKDKIIKDAITGGAVATAVEFINY 144

Source: Oryza sativa Japonica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255584234|ref|XP_002532855.1| conserved hypothetical protein [Ricinus communis] gi|223527392|gb|EEF29533.1| conserved hypothetical protein [Ricinus communis]

 Score =  208 bits (529), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 98/144 (68%), Positives = 117/144 (81%)

Query: 1   MPKSSFAGALTTPRVDVGIDTGNDFLNHTVDGFLKIGAVAATRAVAEDTYNIVKGGNFSR 60
           MP S FAG+L+TP+VDV ID G+ FLN TVDGFLKIG V ATR +AED Y  VK G+ S 
Sbjct: 1   MPISRFAGSLSTPKVDVVIDMGHPFLNLTVDGFLKIGTVGATRVLAEDAYYAVKRGSLSG 60

Query: 61  HHLEHALKKMCKEGAYWGTVAGVYVGMEYGVEKVRGTKDWKNAMIGGAFTGALVSAVGKN 120
              EH LKKMCKEGAYWGTVAG+YVGMEYG+E++RG++DWKNAM+GGA TGAL+SA    
Sbjct: 61  RSFEHTLKKMCKEGAYWGTVAGLYVGMEYGMERIRGSRDWKNAMLGGALTGALISAASNK 120

Query: 121 NRDKVVMDALTGGAIAAAAEFLSY 144
           ++DK+V DA+TGGAIA AA FL+Y
Sbjct: 121 SKDKIVTDAITGGAIATAATFLNY 144

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|449521199|ref|XP_004167617.1| PREDICTED: outer envelope pore protein 16, chloroplastic-like [Cucumis sativus]

 Score =  201 bits (511), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 103/144 (71%), Positives = 119/144 (82%)

Query: 1   MPKSSFAGALTTPRVDVGIDTGNDFLNHTVDGFLKIGAVAATRAVAEDTYNIVKGGNFSR 60
           MP + F G+ +TP++DV IDTG  FLN TVDGFLKIG+VAATRA AED Y +VK G  S 
Sbjct: 1   MPPTGFVGSSSTPKIDVVIDTGYPFLNLTVDGFLKIGSVAATRAAAEDAYFVVKNGAISS 60

Query: 61  HHLEHALKKMCKEGAYWGTVAGVYVGMEYGVEKVRGTKDWKNAMIGGAFTGALVSAVGKN 120
           H  E+ LKKMCKEGAYWG VAG YVGMEYGVE++RGT+DWKNAMIGGA TGALVSA   N
Sbjct: 61  HKFENTLKKMCKEGAYWGAVAGAYVGMEYGVERIRGTRDWKNAMIGGALTGALVSAASNN 120

Query: 121 NRDKVVMDALTGGAIAAAAEFLSY 144
           NRDKVV+DA+TGGA+A AAEF++Y
Sbjct: 121 NRDKVVIDAITGGAVATAAEFINY 144

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|218189836|gb|EEC72263.1| hypothetical protein OsI_05414 [Oryza sativa Indica Group]

 Score =  199 bits (506), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 92/144 (63%), Positives = 116/144 (80%)

Query: 1   MPKSSFAGALTTPRVDVGIDTGNDFLNHTVDGFLKIGAVAATRAVAEDTYNIVKGGNFSR 60
           M  S F+G+LT+PR D+ +D G+ FLN TVDGFLKIGAV A +  AE+T+  +  G+ S+
Sbjct: 1   MAHSGFSGSLTSPRFDLAVDMGHPFLNRTVDGFLKIGAVGACKVAAEETFECLHRGDVSK 60

Query: 61  HHLEHALKKMCKEGAYWGTVAGVYVGMEYGVEKVRGTKDWKNAMIGGAFTGALVSAVGKN 120
           H +E ALKKMCKEGAYWGT+AGVYVGMEYG+E++RG +DWKNAM+GGA TGALVSA   +
Sbjct: 61  HKVESALKKMCKEGAYWGTIAGVYVGMEYGIERIRGHRDWKNAMVGGAVTGALVSAASNS 120

Query: 121 NRDKVVMDALTGGAIAAAAEFLSY 144
           +R  VV +A+TGGAIA AAEFL+Y
Sbjct: 121 HRQNVVKNAITGGAIATAAEFLNY 144

Source: Oryza sativa Indica Group

Species: Oryza sativa

Genus: Oryza

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224054740|ref|XP_002298357.1| predicted protein [Populus trichocarpa] gi|118486782|gb|ABK95226.1| unknown [Populus trichocarpa] gi|222845615|gb|EEE83162.1| predicted protein [Populus trichocarpa]

 Score =  198 bits (504), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 98/144 (68%), Positives = 120/144 (83%)

Query: 1   MPKSSFAGALTTPRVDVGIDTGNDFLNHTVDGFLKIGAVAATRAVAEDTYNIVKGGNFSR 60
           MP SSF  +L TP+++V IDTGN FLN TVDGFLKIG VAA +++AED Y +VKGGNFS 
Sbjct: 1   MPSSSFGASLATPKLNVAIDTGNPFLNVTVDGFLKIGTVAAAKSLAEDAYYVVKGGNFSG 60

Query: 61  HHLEHALKKMCKEGAYWGTVAGVYVGMEYGVEKVRGTKDWKNAMIGGAFTGALVSAVGKN 120
             +EH+LKKMCKEGAYWGTVAG+YVGMEYG+E++RGT DWKNAM+GGA TGAL+SA    
Sbjct: 61  RKIEHSLKKMCKEGAYWGTVAGMYVGMEYGMERIRGTHDWKNAMLGGALTGALISAASNK 120

Query: 121 NRDKVVMDALTGGAIAAAAEFLSY 144
           ++D VV+DA+ GGAIA A+ FL+Y
Sbjct: 121 SKDNVVIDAIAGGAIATASTFLNY 144

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225434951|ref|XP_002283749.1| PREDICTED: uncharacterized protein LOC100255246 [Vitis vinifera]

 Score =  197 bits (500), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 98/144 (68%), Positives = 118/144 (81%)

Query: 1   MPKSSFAGALTTPRVDVGIDTGNDFLNHTVDGFLKIGAVAATRAVAEDTYNIVKGGNFSR 60
           MP    +G+L+TPRV V ID GN FLN TVDGFLKIG VAA RA AE+ Y +VK G+ SR
Sbjct: 1   MPYQRISGSLSTPRVAVMIDMGNPFLNLTVDGFLKIGTVAAARAAAEEAYYVVKRGSISR 60

Query: 61  HHLEHALKKMCKEGAYWGTVAGVYVGMEYGVEKVRGTKDWKNAMIGGAFTGALVSAVGKN 120
           H +EH+LKKMCKE AYWGTVAGVYVGMEYG E++RGT+DWKNAM+GGA TGA++S+  + 
Sbjct: 61  HTVEHSLKKMCKEAAYWGTVAGVYVGMEYGAERIRGTRDWKNAMLGGALTGAIISSACEK 120

Query: 121 NRDKVVMDALTGGAIAAAAEFLSY 144
            RDK+V+ A+TGGAIA AAEFL+Y
Sbjct: 121 GRDKIVVGAITGGAIATAAEFLNY 144

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|242086627|ref|XP_002439146.1| hypothetical protein SORBIDRAFT_09g001310 [Sorghum bicolor] gi|190688732|gb|ACE86395.1| amino acid selective channel protein [Sorghum bicolor] gi|241944431|gb|EES17576.1| hypothetical protein SORBIDRAFT_09g001310 [Sorghum bicolor]

 Score =  196 bits (498), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 88/143 (61%), Positives = 115/143 (80%)

Query: 1   MPKSSFAGALTTPRVDVGIDTGNDFLNHTVDGFLKIGAVAATRAVAEDTYNIVKGGNFSR 60
           MP+  F+G+L +P++DV ID GN FLN TVDGFLKIGAV A +  AE+T++ +  G+ S+
Sbjct: 1   MPRGGFSGSLRSPKIDVVIDMGNPFLNRTVDGFLKIGAVGACKVAAEETFDCLHRGDVSK 60

Query: 61  HHLEHALKKMCKEGAYWGTVAGVYVGMEYGVEKVRGTKDWKNAMIGGAFTGALVSAVGKN 120
           H ++HALKKMC+EGAYWGTVAGVYVGM YGVE+VRG  DWKNAMIGGA +GAL+S    N
Sbjct: 61  HKVKHALKKMCQEGAYWGTVAGVYVGMVYGVERVRGRNDWKNAMIGGALSGALISGASNN 120

Query: 121 NRDKVVMDALTGGAIAAAAEFLS 143
           ++DK++ DA+T GA+A A EF++
Sbjct: 121 HKDKIIKDAITAGAVATAVEFIN 143

Source: Sorghum bicolor

Species: Sorghum bicolor

Genus: Sorghum

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|226491624|ref|NP_001151965.1| amino acid selective channel protein [Zea mays] gi|195628404|gb|ACG36032.1| amino acid selective channel protein [Zea mays] gi|195628430|gb|ACG36045.1| amino acid selective channel protein [Zea mays] gi|195651395|gb|ACG45165.1| amino acid selective channel protein [Zea mays]

 Score =  196 bits (498), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 90/143 (62%), Positives = 113/143 (79%)

Query: 1   MPKSSFAGALTTPRVDVGIDTGNDFLNHTVDGFLKIGAVAATRAVAEDTYNIVKGGNFSR 60
           MP+S F+G+  +P++DV ID GN FLN TVDGFLKIGAV A +  AE+T+  +  G+ S+
Sbjct: 1   MPRSGFSGSFRSPKIDVVIDMGNPFLNRTVDGFLKIGAVGACKVAAEETFECLHRGDVSK 60

Query: 61  HHLEHALKKMCKEGAYWGTVAGVYVGMEYGVEKVRGTKDWKNAMIGGAFTGALVSAVGKN 120
           H +EHAL+KMCKEGAYWGTVAGVYVGM YGVE+VRG  DWKNAMIGGA +GAL+S    +
Sbjct: 61  HKVEHALRKMCKEGAYWGTVAGVYVGMVYGVERVRGRSDWKNAMIGGALSGALISGASNS 120

Query: 121 NRDKVVMDALTGGAIAAAAEFLS 143
           +R KVV DA+T GA+A A EF++
Sbjct: 121 DRGKVVKDAITAGAVATAVEFIN 143

Source: Zea mays

Species: Zea mays

Genus: Zea

Family: Poaceae

Order: Poales

Class: Liliopsida

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|351726578|ref|NP_001238155.1| uncharacterized protein LOC100499674 [Glycine max] gi|255625695|gb|ACU13192.1| unknown [Glycine max]

 Score =  193 bits (490), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 99/144 (68%), Positives = 117/144 (81%), Gaps = 3/144 (2%)

Query: 1   MPKSSFAGALTTPRVDVGIDTGNDFLNHTVDGFLKIGAVAATRAVAEDTYNIVKGGNFSR 60
           MP +  +G   +PR+DV ID GN FLN TVDGFLKIGAVAATR+ AEDTY+I++ GN S 
Sbjct: 1   MPWARLSG---SPRLDVAIDMGNPFLNLTVDGFLKIGAVAATRSAAEDTYHIIQKGNISS 57

Query: 61  HHLEHALKKMCKEGAYWGTVAGVYVGMEYGVEKVRGTKDWKNAMIGGAFTGALVSAVGKN 120
           H  E  LKKMCKEG YWGT+AGVYVGMEYGVE++RGT+DWKNAMIGGA TGALVSA   N
Sbjct: 58  HDFEKTLKKMCKEGVYWGTIAGVYVGMEYGVERIRGTRDWKNAMIGGAVTGALVSAASNN 117

Query: 121 NRDKVVMDALTGGAIAAAAEFLSY 144
            +DK+ +DA+TG AIA AAEF++Y
Sbjct: 118 KKDKIAIDAITGAAIATAAEFINY 141

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	146
UNIPROTKB|Q41050	146	OEP16 "Outer envelope pore pro	0.986	0.986	0.652	1.7e-50
TAIR|locus:2053185	148	OEP16-1 "outer plastid envelop	0.979	0.966	0.552	3.1e-44
TAIR|locus:2130135	178	ATOEP16-2 "AT4G16160" [Arabido	0.582	0.477	0.363	2.9e-17
TAIR|locus:2081615	136	ATOEP16-4 "AT3G62880" [Arabido	0.664	0.713	0.285	1.6e-06

UNIPROTKB|Q41050 OEP16 "Outer envelope pore protein 16, chloroplastic" [Pisum sativum (taxid:3888)]

 Score = 525 (189.9 bits), Expect = 1.7e-50, P = 1.7e-50
 Identities = 94/144 (65%), Positives = 119/144 (82%)

Query:     1 MPKSSFAGALTTPRVDVGIDTGNDFLNHTVDGFLKIGAVAATRAVAEDTYNIVKGGNFSR 60
             MP+SSF+G+L++P++DV ID GN FLN TVDGFLKIGAVAATR+VAEDT++I++ G+ S 
Sbjct:     1 MPRSSFSGSLSSPKLDVVIDMGNPFLNLTVDGFLKIGAVAATRSVAEDTFHIIRKGSISS 60

Query:    61 HHLEHALKKMCKEGAYWGTVAGVYVGMEYGVEKVRGTKDWKNAMIGGAFTGALVSAVGKN 120
             +  E +LKKMCKEGAYWG +AGVYVGMEYGVE++RGT+DWKNAM GGA TGALVSA   N
Sbjct:    61 NDFEKSLKKMCKEGAYWGAIAGVYVGMEYGVERIRGTRDWKNAMFGGAVTGALVSAASNN 120

Query:   121 NRDKVVMDALTGGXXXXXXEFLSY 144
              +DK+ +DA+TG       EF++Y
Sbjct:   121 KKDKIAVDAITGAAIATAAEFINY 144

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0045037 "protein import into chloroplast stroma" evidence=IDA

TAIR|locus:2053185 OEP16-1 "outer plastid envelope protein 16-1" [Arabidopsis thaliana (taxid:3702)]

 Score = 466 (169.1 bits), Expect = 3.1e-44, P = 3.1e-44
 Identities = 79/143 (55%), Positives = 109/143 (76%)

Query:     1 MPKSSFAGALTTPRVDVGIDTGNDFLNHTVDGFLKIGAVAATRAVAEDTYNIVKGGNFSR 60
             MP S+F+G ++TP++ V +D GN FLN TVD FLKIGAV  T+++AEDTY  +  G+ S+
Sbjct:     1 MPSSTFSGTVSTPKLSVAVDMGNPFLNLTVDAFLKIGAVGVTKSLAEDTYKAIDKGSLSK 60

Query:    61 HHLEHALKKMCKEGAYWGTVAGVYVGMEYGVEKVRGTKDWKNAMIGGAFTGALVSAVGKN 120
               LEHALKK+CKEG YWG   GVY+G EYG+E++RG++DWKNAM+ GA TGA++SAVGK 
Sbjct:    61 STLEHALKKLCKEGVYWGAAGGVYIGTEYGIERIRGSRDWKNAMLAGAATGAVLSAVGKK 120

Query:   121 NRDKVVMDALTGGXXXXXXEFLS 143
              +D +V+DA+ GG      +F++
Sbjct:   121 GKDTIVIDAILGGALATASQFVN 143

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0015031 "protein transport" evidence=ISS

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=ISS

GO:0009941 "chloroplast envelope" evidence=IDA

GO:0005773 "vacuole" evidence=IDA

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0009744 "response to sucrose stimulus" evidence=IEP;RCA

GO:0009749 "response to glucose stimulus" evidence=IEP;RCA

GO:0009409 "response to cold" evidence=IEP;RCA

GO:0009527 "plastid outer membrane" evidence=IDA

GO:0045037 "protein import into chloroplast stroma" evidence=IDA

GO:0009707 "chloroplast outer membrane" evidence=IDA

GO:0015171 "amino acid transmembrane transporter activity" evidence=IMP

GO:0042742 "defense response to bacterium" evidence=RCA

GO:0009536 "plastid" evidence=IDA

TAIR|locus:2130135 ATOEP16-2 "AT4G16160" [Arabidopsis thaliana (taxid:3702)]

 Score = 151 (58.2 bits), Expect = 2.9e-17, Sum P(2) = 2.9e-17
 Identities = 32/88 (36%), Positives = 47/88 (53%)

Query:    59 SRHHLEHALKKMCKEGAYWGTVAGVYVGMEYGVEKVRG-TKDWKNAMIGGAFTGALVSAV 117
             S   L+  +K   KE   WG  AG+Y G+ YG+ +VRG   DW+N+ + GA TGA ++  
Sbjct:    88 SSKSLDALVKNTGKESLQWGLAAGLYSGITYGMTEVRGGAHDWRNSAVAGALTGAAMAMT 147

Query:   118 G--KNNRDKVVMDALTGGXXXXXXEFLS 143
                + + ++VV  ALTG         LS
Sbjct:   148 TSERTSHEQVVQSALTGAAISTAANLLS 175

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=ISS

GO:0015031 "protein transport" evidence=ISS

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=ISS

GO:0009527 "plastid outer membrane" evidence=ISS

GO:0015171 "amino acid transmembrane transporter activity" evidence=IMP

GO:0031359 "integral to chloroplast outer membrane" evidence=IDA

TAIR|locus:2081615 ATOEP16-4 "AT3G62880" [Arabidopsis thaliana (taxid:3702)]

 Score = 110 (43.8 bits), Expect = 1.6e-06, P = 1.6e-06
 Identities = 28/98 (28%), Positives = 44/98 (44%)

Query:    29 TVDGFLKIGAVAATRAVAEDTYNIVKGGNFSRHHLEHALKKMCKEGAYWGTVAGVYVGME 88
             TV+  L++        +     +  K G           K + + G   G V+GV+    
Sbjct:    15 TVESVLRVATAGGLYGLCAGPRDARKIGLSGVSQASFVAKSIGRFGFQCGLVSGVFTMTH 74

Query:    89 YGVEKVRGTKDWKNAMIGGAFTGALVSAVGKNNRDKVV 126
              G+++ RG  DW NA++GGA  GA V A+   N  +VV
Sbjct:    75 CGLQRYRGKNDWVNALVGGAVAGAAV-AISTRNWTQVV 111


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.318   0.135   0.403    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      146       140   0.00091  102 3  11 22  0.45    31
                                                     30  0.46    33


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  4
  No. of states in DFA:  581 (62 KB)
  Total size of DFA:  136 KB (2085 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  13.11u 0.13s 13.24t   Elapsed:  00:00:01
  Total cpu time:  13.11u 0.13s 13.24t   Elapsed:  00:00:01
  Start:  Mon May 20 22:06:39 2013   End:  Mon May 20 22:06:40 2013

GO:0005744 "mitochondrial inner membrane presequence translocase complex" evidence=ISS

GO:0009507 "chloroplast" evidence=ISM

GO:0015031 "protein transport" evidence=ISS

GO:0015450 "P-P-bond-hydrolysis-driven protein transmembrane transporter activity" evidence=ISS

GO:0009527 "plastid outer membrane" evidence=ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
Q41050	OEP16_PEA	No assigned EC number	0.6875	0.9863	0.9863	N/A	no
Q9ZV24	OP161_ARATH	No assigned EC number	0.5734	0.9794	0.9662	yes	no

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	146
pfam02466	128	pfam02466, Tim17, Tim17/Tim22/Tim23/Pmp24 family	1e-14
TIGR00983	149	TIGR00983, 3a0801s02tim23, mitochondrial import in	2e-04

>gnl|CDD|217053 pfam02466, Tim17, Tim17/Tim22/Tim23/Pmp24 family

 Score = 65.4 bits (160), Expect = 1e-14
 Identities = 31/127 (24%), Positives = 47/127 (37%), Gaps = 9/127 (7%)

Query: 24  DFLNHTVDGFLK---IGAVAATRAVAEDTYNIVKGGNFSRHHLEHALKKMCK----EGAY 76
                 V        +GAV      A             +  L   L    +     G  
Sbjct: 1   PCPERIVYDTGGGFLMGAVYGGFFGAPHGLVNALRSGPLKLRLNGVLNATGRRGPSHGNN 60

Query: 77  WGTVAGVYVGMEYGVEKVRGTKDWKNAMIGGAFTGALVSAVGKNNRDKVVMDALTGGAIA 136
           +    G+Y G+E  +EK+RG +D  N++I GA TGA++    +       + A  G A +
Sbjct: 61  FAVFGGLYSGIECALEKLRGKEDPWNSIIAGALTGAVLGL--RGGPKAAAVGAAVGAAFS 118

Query: 137 AAAEFLS 143
           AA E L 
Sbjct: 119 AAIEGLG 125

The pre-protein translocase of the mitochondrial outer membrane (Tom) allows the import of pre-proteins from the cytoplasm. Tom forms a complex with a number of proteins, including Tim17. Tim17 and Tim23 are thought to form the translocation channel of the inner membrane. This family includes Tim17, Tim22 and Tim23. This family also includes Pmp24 a peroxisomal protein. The involvement of this domain in the targeting of PMP24 remains to be proved. PMP24 was known as Pmp27 in. Length = 128

>gnl|CDD|130056 TIGR00983, 3a0801s02tim23, mitochondrial import inner membrane translocase subunit tim23

 Score = 38.7 bits (90), Expect = 2e-04
 Identities = 20/69 (28%), Positives = 32/69 (46%), Gaps = 4/69 (5%)

Query: 54  KGGNFSRHHLEHALKKMCKEGAYWGTVAG----VYVGMEYGVEKVRGTKDWKNAMIGGAF 109
           +   +++  L   L  + + G +WG   G    VY G+   +E  RG  D  N++  GA 
Sbjct: 62  QSMPWTKLRLNQILNMVTRRGPFWGNTLGILALVYNGINSIIEATRGKHDDFNSVAAGAL 121

Query: 110 TGALVSAVG 118
           TGAL  +  
Sbjct: 122 TGALYKSTR 130

[Transport and binding proteins, Amino acids, peptides and amines]. Length = 149

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	146
KOG3225	168	consensus Mitochondrial import inner membrane tran	99.96
TIGR00980	170	3a0801so1tim17 mitochondrial import inner membrane	99.95
PTZ00236	164	mitochondrial import inner membrane translocase su	99.94
TIGR00983	149	3a0801s02tim23 mitochondrial import inner membrane	99.94
PF02466	128	Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: I	99.93
KOG1652	183	consensus Mitochondrial import inner membrane tran	99.86
KOG3324	206	consensus Mitochondrial import inner membrane tran	99.84
COG5596	191	TIM22 Mitochondrial import inner membrane transloc	99.66
COG5596	191	TIM22 Mitochondrial import inner membrane transloc	97.6
PF10247	67	Romo1: Reactive mitochondrial oxygen species modul	97.53
KOG4096	75	consensus Uncharacterized conserved protein [Funct	97.1
KOG4608	270	consensus Uncharacterized conserved protein [Funct	96.82
PF12732	74	YtxH: YtxH-like protein; InterPro: IPR024623 This	91.25
TIGR00980	170	3a0801so1tim17 mitochondrial import inner membrane	86.31
PF05818	215	TraT: Enterobacterial TraT complement resistance p	83.32

>KOG3225 consensus Mitochondrial import inner membrane translocase, subunit TIM22 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.96  E-value=5e-30  Score=198.89  Aligned_cols=129  Identities=16%  Similarity=0.135  Sum_probs=110.3

Q ss_pred             CcccccccccCchHHHHHHHHHHHHHHHHHHHHHHHHhhh----hc-CCCcchHHH-HHHHHHhcccchhHHHHHHHhhc
Q 036056           13 PRVDVGIDTGNDFLNHTVDGFLKIGAVAATRAVAEDTYNI----VK-GGNFSRHHL-EHALKKMCKEGAYWGTVAGVYVG   86 (146)
Q Consensus        13 p~~~~~~d~~~pc~~rtv~~~l~gg~~Ga~~Gl~~ga~~~----~~-~g~~~k~~~-~~~lk~~g~~g~~~g~vggvfsg   86 (146)
                      |++.-.++.+|+|+.|++.+-+.|.++|.++|+|.++++.    |+ ...+.++++ +++.++++..+.+|+++|++|++
T Consensus        30 ~~e~r~le~~n~c~~Ka~~sgV~GfglG~~~GlFlas~d~~~~dP~i~~~~ar~q~~kdMg~r~~s~~knF~~iGlvfsg  109 (168)
T KOG3225|consen   30 PTEMRYLEEENSCAVKAVKSGVTGFGLGGAFGLFLASLDTQPNDPTIYRMPARKQVAKDMGQRSGSYAKNFAIIGLVFSG  109 (168)
T ss_pred             hHHHHHHHHhcchhHHHHHhhccccchhhhHHhhhhhcccCCCCCchhhhhhHHHHHHHHHhhhcchhhhhhhhhhhehh
Confidence            3444558999999999999999999999999999999983    21 223444444 45555555566799999999999


Q ss_pred             chhhhhhhhhccchhHHHHHHHHHHHHhhhccCCchhHHHHhHHHHHHHHHHHHHhh
Q 036056           87 MEYGVEKVRGTKDWKNAMIGGAFTGALVSAVGKNNRDKVVMDALTGGAIAAAAEFLS  143 (146)
Q Consensus        87 ~ec~ie~~Rgk~D~~Ns~~aGa~TGa~l~~~~G~~~~~~v~~ai~gaa~s~aie~~~  143 (146)
                      +||.||++|.||||.|++++||+||+.++.++| |++.++||+++ ++||++||+|.
T Consensus       110 ~Ec~iE~~RAK~D~~NgaiaG~vtGg~l~~raG-p~a~~~G~agf-a~fS~~id~y~  164 (168)
T KOG3225|consen  110 VECLIESFRAKSDWYNGAIAGCVTGGSLGYRAG-PKAAAIGCAGF-AAFSAAIDKYM  164 (168)
T ss_pred             HHHHHHHHHhhhchhcceeeeeeeccchhhccc-chhhhhchhHH-HHHHHHHHHhh
Confidence            999999999999999999999999999999999 99999999995 99999999875

>TIGR00980 3a0801so1tim17 mitochondrial import inner membrane translocase subunit tim17

Probab=99.95  E-value=3.1e-27  Score=185.66  Aligned_cols=115  Identities=20%  Similarity=0.228  Sum_probs=97.2

Q ss_pred             cCchHHHHHHH----HHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHHHHHhcccc----hhHHHHHHHhhcchhhhhh
Q 036056           22 GNDFLNHTVDG----FLKIGAVAATRAVAEDTYNIVKGGNFSRHHLEHALKKMCKEG----AYWGTVAGVYVGMEYGVEK   93 (146)
Q Consensus        22 ~~pc~~rtv~~----~l~gg~~Ga~~Gl~~ga~~~~~~g~~~k~~~~~~lk~~g~~g----~~~g~vggvfsg~ec~ie~   93 (146)
                      -+||+.|++|+    |.+|.+.|.+|+++++.++.|..     ++++..++.+..++    .+|++||++|+++||++++
T Consensus         6 r~pcp~r~~d~~G~af~~G~~~G~~~g~~~G~rnsp~g-----~rl~g~l~av~~rap~~g~~Fav~g~lys~~ec~i~~   80 (170)
T TIGR00980         6 REPCPYRILDDFGGAFAMGTIGGSIFQAFKGFRNSPKG-----EKLVGAMRAIKTRAPVLGGNFAVWGGLFSTIDCAVVA   80 (170)
T ss_pred             cCCCcchhHHhhhHHHHHHHHHHHHHHHHHHhhcCCcc-----chhhHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            58999999998    67888888888888888766522     25667777666665    5788999999999999999


Q ss_pred             hhhccchhHHHHHHHHHHHHhhhccCCchhHHHHhHHHHHHHHHHHHHhh
Q 036056           94 VRGTKDWKNAMIGGAFTGALVSAVGKNNRDKVVMDALTGGAIAAAAEFLS  143 (146)
Q Consensus        94 ~Rgk~D~~Ns~~aGa~TGa~l~~~~G~~~~~~v~~ai~gaa~s~aie~~~  143 (146)
                      +|+||||||+++|||+||++|++++| | +++++++++++++.++||+..
T Consensus        81 ~R~KeD~~NsiiAG~~TGa~l~~r~G-~-~a~~~~aa~gg~~la~ie~~g  128 (170)
T TIGR00980        81 IRKKEDPWNSIISGFLTGAALAVRGG-P-RAMRGSAILGACILAVIEGVG  128 (170)
T ss_pred             HhcccchHHHHHHHHHHHHHHHhccC-h-HHHHHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999 6 555666666899999999875

>PTZ00236 mitochondrial import inner membrane translocase subunit tim17; Provisional

Probab=99.94  E-value=1.1e-26  Score=181.62  Aligned_cols=115  Identities=20%  Similarity=0.300  Sum_probs=98.8

Q ss_pred             cCchHHHHHHH----HHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHHHHHhcccc----hhHHHHHHHhhcchhhhhh
Q 036056           22 GNDFLNHTVDG----FLKIGAVAATRAVAEDTYNIVKGGNFSRHHLEHALKKMCKEG----AYWGTVAGVYVGMEYGVEK   93 (146)
Q Consensus        22 ~~pc~~rtv~~----~l~gg~~Ga~~Gl~~ga~~~~~~g~~~k~~~~~~lk~~g~~g----~~~g~vggvfsg~ec~ie~   93 (146)
                      -+||+.|++|+    |.+|.+.|++|+++.|.+++|. +    ++++..++.+++++    ..|++||++|+++||++++
T Consensus         8 r~pcp~ri~dd~G~af~~G~vgG~~~~~~~G~rnsp~-g----~rl~g~l~~~~~rap~~g~~FAv~G~~ys~~ec~~~~   82 (164)
T PTZ00236          8 REPCPDRIIEDMGGAFSMGCIGGFIWHFLKGMRNSPK-G----ERFSGGFYLLRKRAPILGGNFAIWGGLFSTFDCTLQY   82 (164)
T ss_pred             cCCCchHHHHhccHHHHHHHHHHHHHHHHHHHHhCCC-c----chHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            38999999998    9999999999999999988863 2    35666666666554    5788999999999999999


Q ss_pred             hhhccchhHHHHHHHHHHHHhhhccCCchhHHHHhHHHHHHHHHHHHHhh
Q 036056           94 VRGTKDWKNAMIGGAFTGALVSAVGKNNRDKVVMDALTGGAIAAAAEFLS  143 (146)
Q Consensus        94 ~Rgk~D~~Ns~~aGa~TGa~l~~~~G~~~~~~v~~ai~gaa~s~aie~~~  143 (146)
                      +|+||||||+++||++||++++++.| |+.. +.++++|++++.+||.+.
T Consensus        83 ~R~K~D~~Nsi~AG~~TGa~l~~r~G-~~~~-~~~a~~Gg~~~~~ie~~~  130 (164)
T PTZ00236         83 LRGKEDHWNAIASGFFTGGVLAIRGG-WRSA-VRNAIFGGILLGIIELVS  130 (164)
T ss_pred             HHccCchHHHHHHHHHHHHHHHHhcC-hHHH-HHHHHHHHHHHHHHHHHH
Confidence            99999999999999999999999999 6665 555666899989898775

>TIGR00983 3a0801s02tim23 mitochondrial import inner membrane translocase subunit tim23

Probab=99.94  E-value=1.3e-26  Score=178.69  Aligned_cols=113  Identities=27%  Similarity=0.339  Sum_probs=100.4

Q ss_pred             cCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHHHHHhcccchhH----HHHHHHhhcchhhhhhhhhc
Q 036056           22 GNDFLNHTVDGFLKIGAVAATRAVAEDTYNIVKGGNFSRHHLEHALKKMCKEGAYW----GTVAGVYVGMEYGVEKVRGT   97 (146)
Q Consensus        22 ~~pc~~rtv~~~l~gg~~Ga~~Gl~~ga~~~~~~g~~~k~~~~~~lk~~g~~g~~~----g~vggvfsg~ec~ie~~Rgk   97 (146)
                      +++....|..+|++|.+.|++||+++|.++.| ...+.|++++.++|+++++++.|    |+|+++|+++||.+|++|+|
T Consensus        31 ~e~~~~~~G~ay~~G~~~Gg~~Gl~~G~~~~~-~~~~~k~rln~~ln~~~~~g~~~G~~~g~~g~lys~~e~~i~~~R~k  109 (149)
T TIGR00983        31 FEDLCFGTGTCYLTGLAIGALNGLRLGLKETQ-SMPWTKLRLNQILNMVTRRGPFWGNTLGILALVYNGINSIIEATRGK  109 (149)
T ss_pred             hhhhhhhHhHHHHHHHHHHHHHHHHHHHhhCC-CCCcHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            45566789999999999999999999998765 34577999999999999998755    59999999999999999999


Q ss_pred             cchhHHHHHHHHHHHHhhhccCCchhHHHHhHHHHHHHHH
Q 036056           98 KDWKNAMIGGAFTGALVSAVGKNNRDKVVMDALTGGAIAA  137 (146)
Q Consensus        98 ~D~~Ns~~aGa~TGa~l~~~~G~~~~~~v~~ai~gaa~s~  137 (146)
                      |||+|+++||++||+++++++| |+++++++++ |++++.
T Consensus       110 ~D~~Nsv~AGa~TGal~~~~~G-~r~~~~g~~~-G~~l~~  147 (149)
T TIGR00983       110 HDDFNSVAAGALTGALYKSTRG-LRGMARSGAL-GATAAG  147 (149)
T ss_pred             chhhHhHHHHHHHHHHHHhccC-hHHHHHHhHH-HHHHhh
Confidence            9999999999999999999999 9999998888 455543

>PF02466 Tim17: Tim17/Tim22/Tim23/Pmp24 family; InterPro: IPR003397 The membrane-embedded multi-protein complexes of mitochondria mediate the transport of nuclear-encoded proteins across and into the outer or inner mitochondrial membranes []

Probab=99.93  E-value=3.2e-25  Score=163.46  Aligned_cols=119  Identities=27%  Similarity=0.312  Sum_probs=105.8

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhh---hcCCCcchHHHHHHHHHhcc----cchhHHHHHHHhhcchhhhhhhhh
Q 036056           24 DFLNHTVDGFLKIGAVAATRAVAEDTYNI---VKGGNFSRHHLEHALKKMCK----EGAYWGTVAGVYVGMEYGVEKVRG   96 (146)
Q Consensus        24 pc~~rtv~~~l~gg~~Ga~~Gl~~ga~~~---~~~g~~~k~~~~~~lk~~g~----~g~~~g~vggvfsg~ec~ie~~Rg   96 (146)
                      ||++|++++.+++..+|+++|.+.+.+..   ++...+.+++++.+++.+++    .+..||.++++|+++||.+|++|+
T Consensus         1 ~c~~~~~~~~~~g~~~G~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~y~~~~~~l~~~R~   80 (128)
T PF02466_consen    1 SCPERILDSTGKGFVAGAVFGGFIGAISAFTRPPRGSPLRPRLRSILNAVGRRGPRHGARFGSFGGLYSGIECALERLRG   80 (128)
T ss_pred             CccHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCcHhHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            79999999999999999999999999842   33556778899999999999    677889999999999999999999


Q ss_pred             ccchhHHHHHHHHHHHHhhhccCCchhHHHHhHHHHHHHHHHHHHhhc
Q 036056           97 TKDWKNAMIGGAFTGALVSAVGKNNRDKVVMDALTGGAIAAAAEFLSY  144 (146)
Q Consensus        97 k~D~~Ns~~aGa~TGa~l~~~~G~~~~~~v~~ai~gaa~s~aie~~~~  144 (146)
                      |||+||++++|++||++++.+.+ ++..+.+ ++.+++++.++|+++.
T Consensus        81 k~D~~N~~~aG~~aGa~~~~~~g-~~~~~~~-~~~~a~~~~~~~~~~~  126 (128)
T PF02466_consen   81 KDDPWNSAIAGAAAGAVLGLRSG-PRGMASG-AALGAAFAAAVEYYGR  126 (128)
T ss_pred             ccccchhHHHHHHHHHHHHhccC-hHHHHHH-HHHHHHHHHHHHHHhc
Confidence            99999999999999999999998 6666665 5557999999999874

The TOM (translocase of the outer mitochondrial membrane) complex consists of cytosol-exposed receptors and a pore-forming core, and mediates the transport of proteins from the cytosol across and into the outer mitochondrial membrane. A novel protein complex in the outer membrane of mitochondria, called the SAM complex (sorting and assembly machinery), is involved in the biogenesis of beta-barrel proteins of the outer membrane. Two translocases of the inner mitochondrial membrane (TIM22 and TIM23 complexes) mediate protein transport at the inner membrane. The TIM23 complex (a presequence translocase) mediates the transport of presequence-containing proteins across and into the inner membrane. Tim23 and Tim17 form part of this complex. Tim23 forms a pore in the inner membrane. The role of Tim17 is not yet fully understood. The TIM22 complex (a twin-pore carrier translocase) catalyses the insertion of multi-spanning proteins that have internal targeting signals into the inner membrane. The TIM22 complex mediates the membrane insertion of multi-spanning inner-membrane proteins that have internal targeting signals, and it uses the membrane potential as an external driving force. The Tim22 subunit of the mitochondrial import inner membrane translocase is included in this family. This family also includes Pmp24, a peroxisomal membrane protein, and NADH ubiquinone dehydrogenase 1 alpha subunit 11. Pmp24 was previously known as Pmp27 [].

>KOG1652 consensus Mitochondrial import inner membrane translocase, subunit TIM17 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.86  E-value=2.7e-23  Score=163.97  Aligned_cols=119  Identities=20%  Similarity=0.238  Sum_probs=105.3

Q ss_pred             cCchHHHHHHH----HHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHHHHHhcccchhHHHHHHHhhcchhhhhhhhhc
Q 036056           22 GNDFLNHTVDG----FLKIGAVAATRAVAEDTYNIVKGGNFSRHHLEHALKKMCKEGAYWGTVAGVYVGMEYGVEKVRGT   97 (146)
Q Consensus        22 ~~pc~~rtv~~----~l~gg~~Ga~~Gl~~ga~~~~~~g~~~k~~~~~~lk~~g~~g~~~g~vggvfsg~ec~ie~~Rgk   97 (146)
                      -+||+-|.++.    |.+|.+-|.+|.++.|.++.|+.. ..+..++.+..+.+..+.+|++||++||.+||.+.++|+|
T Consensus         6 r~pcp~riv~d~g~afamg~igG~~f~~ikG~~nap~G~-r~~gg~~av~~~ap~~ggsFAvwgglfSt~dC~Lv~~R~K   84 (183)
T KOG1652|consen    6 REPCPIRIVDDCGGAFAMGTIGGSVFQLIKGFRNAPSGA-RLVGGISAVKMRAPQSGGSFAVWGGLFSTVDCALVAIRKK   84 (183)
T ss_pred             CCCCCceeeccccchhhhcccccceeeeeeeeecCCccc-ccccchhhhhccCcccccceeeeechhhHHHHHHHHHhcc
Confidence            36888888876    788888899999999999987533 4455677888899999999999999999999999999999


Q ss_pred             cchhHHHHHHHHHHHHhhhccCCchhHHHHhHHHHHHHHHHHHHhh
Q 036056           98 KDWKNAMIGGAFTGALVSAVGKNNRDKVVMDALTGGAIAAAAEFLS  143 (146)
Q Consensus        98 ~D~~Ns~~aGa~TGa~l~~~~G~~~~~~v~~ai~gaa~s~aie~~~  143 (146)
                      +|+||++++||+||++|+.+.|  +.+++.+|+.|+++...+|-+.
T Consensus        85 eDpwNsivsGa~TGg~La~r~g--~~a~~~sa~~~g~~lamieg~g  128 (183)
T KOG1652|consen   85 EDPWNSIVSGAATGGLLAARGG--PKAMLTSAITGGLLLAMIEGLG  128 (183)
T ss_pred             cchHHHHHHHhhccceeecccc--HHHHHHHHHHHHHHHHHHHhHH
Confidence            9999999999999999999999  7778899999999999998664

>KOG3324 consensus Mitochondrial import inner membrane translocase, subunit TIM23 [Intracellular trafficking, secretion, and vesicular transport]

Probab=99.84  E-value=2.1e-21  Score=155.16  Aligned_cols=109  Identities=28%  Similarity=0.424  Sum_probs=97.6

Q ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHHHHHhcccchhHH----HHHHHhhcchhhhhhhhhccc
Q 036056           24 DFLNHTVDGFLKIGAVAATRAVAEDTYNIVKGGNFSRHHLEHALKKMCKEGAYWG----TVAGVYVGMEYGVEKVRGTKD   99 (146)
Q Consensus        24 pc~~rtv~~~l~gg~~Ga~~Gl~~ga~~~~~~g~~~k~~~~~~lk~~g~~g~~~g----~vggvfsg~ec~ie~~Rgk~D   99 (146)
                      +....|=-.|+.|.++|+++|+..|..+ ++..++.|+++++++|.++|+|..||    +++.+|+++|++|++.|+|||
T Consensus        76 ~l~f~tG~~yl~G~~iGa~~G~~~Glk~-~e~~~~~Klr~nrILN~~t~~G~~~gN~lG~laL~YsaiesgI~~~R~~dd  154 (206)
T KOG3324|consen   76 NLTFGTGWAYLTGSAIGAFNGLILGLKN-TENGASGKLRLNRILNSVTRRGRFWGNTLGSLALMYSAIESGIEATRGKDD  154 (206)
T ss_pred             hhheeccchhccchhhhhHHHHHHhhhc-CCCCCccchhHHHHhhhccccccccccchhHHHHHHHHHHHHHHHhhcccc
Confidence            3444555669999999999999999954 56689999999999999999999885    899999999999999999999


Q ss_pred             hhHHHHHHHHHHHHhhhccCCchhHHHHhHHHHHH
Q 036056          100 WKNAMIGGAFTGALVSAVGKNNRDKVVMDALTGGA  134 (146)
Q Consensus       100 ~~Ns~~aGa~TGa~l~~~~G~~~~~~v~~ai~gaa  134 (146)
                      |+|+++||++||++++++.| +|++.+++++.+.|
T Consensus       155 ~lnsv~AGalTGalyrs~~G-lr~~av~ga~g~~a  188 (206)
T KOG3324|consen  155 DLNSVAAGALTGALYRSTRG-LRAAAVAGAVGGTA  188 (206)
T ss_pred             chhhhhhhhhhhhhhhcCCC-chHHHHHHHHHHHH
Confidence            99999999999999999999 99999999885333

>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]

Probab=99.66  E-value=9e-18  Score=133.37  Aligned_cols=136  Identities=18%  Similarity=0.143  Sum_probs=111.5

Q ss_pred             CcccCCCCccccc-ccccC----chHHHHHHHHHHHHHHHHHHHHHHHHhhhh-----c----------------CCCcc
Q 036056            6 FAGALTTPRVDVG-IDTGN----DFLNHTVDGFLKIGAVAATRAVAEDTYNIV-----K----------------GGNFS   59 (146)
Q Consensus         6 ~~~~~~~p~~~~~-~d~~~----pc~~rtv~~~l~gg~~Ga~~Gl~~ga~~~~-----~----------------~g~~~   59 (146)
                      +|++-.+|-..+. .|+++    -|+.+++.+.+.|...|...+.+.++...-     .                ...+.
T Consensus        22 lS~~e~d~~~~~~l~~~~~~~~~~~i~k~~~s~l~G~~~g~~~g~f~ssl~y~t~~~~~~g~nfg~vwGgl~~~i~~~~~  101 (191)
T COG5596          22 LSPEERDPCPLEKLADFMKAFSYSCIGKSALSGLKGFRLGGPSGGFSSSLAYGTGLVHLLGLNFGGVWGGLFSTIDCTPF  101 (191)
T ss_pred             cChhhcCchhhhHHhhhccchhhcchhhhhhhcccccccccccccchhhcccccccccccCccccccccceeeccccchH
Confidence            3444444444444 66766    599999999888888888888888775411     1                11366


Q ss_pred             hHHHHHHHHHhcccch----hHHHHHHHhhcchhhhhhhhhccchhHHHHHHHHHHHHhhhccCCchhHHHHhHHHHHHH
Q 036056           60 RHHLEHALKKMCKEGA----YWGTVAGVYVGMEYGVEKVRGTKDWKNAMIGGAFTGALVSAVGKNNRDKVVMDALTGGAI  135 (146)
Q Consensus        60 k~~~~~~lk~~g~~g~----~~g~vggvfsg~ec~ie~~Rgk~D~~Ns~~aGa~TGa~l~~~~G~~~~~~v~~ai~gaa~  135 (146)
                      ++|++.+++.+++++.    .+|+.|++|+++||.|+.+|+||||.|++.+|+.||+.++.+.| ++++.++.+++ +|+
T Consensus       102 r~q~~~~~~n~~~rg~ftG~n~GvlGl~y~~~ns~I~~~r~k~d~~~~iaaG~~TGa~~~~~~g-~qa~~~~~a~~-aa~  179 (191)
T COG5596         102 RLQLKEQLNNAGKRGFFTGKNLGVLGLIYAGINSIITALRAKHDIANAIAAGAFTGAALASSAG-PQAMPMGGAGF-AAF  179 (191)
T ss_pred             HHHHhhccccccccccccccccceeeeecccchhhhhhhhhccccchhhhhhhhhhHHHHhhcc-ccccccCccch-hhh
Confidence            8899999999999975    67899999999999999999999999999999999999999999 99999999996 999


Q ss_pred             HHHHHHhh
Q 036056          136 AAAAEFLS  143 (146)
Q Consensus       136 s~aie~~~  143 (146)
                      |..++.+.
T Consensus       180 s~~~~~~~  187 (191)
T COG5596         180 SAGITLAM  187 (191)
T ss_pred             hhhHHhhh
Confidence            99988654

>COG5596 TIM22 Mitochondrial import inner membrane translocase, subunit TIM22 [Posttranslational modification, protein turnover, chaperones]

Probab=97.60  E-value=1.5e-05  Score=63.90  Aligned_cols=126  Identities=13%  Similarity=0.076  Sum_probs=81.9

Q ss_pred             CCCCCCccc---CCCCccccc--ccccCchHHHHHHHHHHHHHH----HHHHHHHHHHhhhhcCCCcchHHHHHHHHHhc
Q 036056            1 MPKSSFAGA---LTTPRVDVG--IDTGNDFLNHTVDGFLKIGAV----AATRAVAEDTYNIVKGGNFSRHHLEHALKKMC   71 (146)
Q Consensus         1 ~~~~~~~~~---~~~p~~~~~--~d~~~pc~~rtv~~~l~gg~~----Ga~~Gl~~ga~~~~~~g~~~k~~~~~~lk~~g   71 (146)
                      ||.+.|-.+   ..+|+.+.+  -|.-.||.---..+|-...-.    +.+|.-.+|-...+.. ......+.......-
T Consensus         1 ~~~s~~~~~~~~~~s~~~~~~lS~~e~d~~~~~~l~~~~~~~~~~~i~k~~~s~l~G~~~g~~~-g~f~ssl~y~t~~~~   79 (191)
T COG5596           1 MVYSGFGLEQLSPPSPNAYNILSPEERDPCPLEKLADFMKAFSYSCIGKSALSGLKGFRLGGPS-GGFSSSLAYGTGLVH   79 (191)
T ss_pred             CcccccCHhhcCCCCCCcccccChhhcCchhhhHHhhhccchhhcchhhhhhhccccccccccc-ccchhhccccccccc
Confidence            555555432   345666655  567789999999888774443    4444433333221111 111112222223344


Q ss_pred             ccchhHH-HHHHHhhcchhhhhhhhhccchhHHHHHHHHHHHHhhhccCC--chhHHHH
Q 036056           72 KEGAYWG-TVAGVYVGMEYGVEKVRGTKDWKNAMIGGAFTGALVSAVGKN--NRDKVVM  127 (146)
Q Consensus        72 ~~g~~~g-~vggvfsg~ec~ie~~Rgk~D~~Ns~~aGa~TGa~l~~~~G~--~~~~~v~  127 (146)
                      -.+.+|| +||++|+.++|+.+++|.|.|.||....|+.||..++.....  -+..+|.
T Consensus        80 ~~g~nfg~vwGgl~~~i~~~~~r~q~~~~~~n~~~rg~ftG~n~GvlGl~y~~~ns~I~  138 (191)
T COG5596          80 LLGLNFGGVWGGLFSTIDCTPFRLQLKEQLNNAGKRGFFTGKNLGVLGLIYAGINSIIT  138 (191)
T ss_pred             ccCccccccccceeeccccchHHHHHhhccccccccccccccccceeeeecccchhhhh
Confidence            4567787 899999999999999999999999999999999988877663  3455666

>PF10247 Romo1: Reactive mitochondrial oxygen species modulator 1; InterPro: IPR018450 The majority of endogenous reactive oxygen species (ROS) in cells are produced by the mitochondrial respiratory chain

Probab=97.53  E-value=0.00033  Score=47.79  Aligned_cols=67  Identities=19%  Similarity=0.196  Sum_probs=56.7

Q ss_pred             CchHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHHHHHhcccchhHHHHHHHhhcchh
Q 036056           23 NDFLNHTVDGFLKIGAVAATRAVAEDTYNIVKGGNFSRHHLEHALKKMCKEGAYWGTVAGVYVGMEY   89 (146)
Q Consensus        23 ~pc~~rtv~~~l~gg~~Ga~~Gl~~ga~~~~~~g~~~k~~~~~~lk~~g~~g~~~g~vggvfsg~ec   89 (146)
                      |.|..|.-.++.+|+.+|.+.|+..|+|...+.+.+++..++.+-+.+-..+..||.+=++=+.+.|
T Consensus         1 psc~~kikmG~~MG~~VG~~~G~l~G~~~~~r~g~~~~~~~~~lg~~~l~sg~tFG~Fm~iGs~IRc   67 (67)
T PF10247_consen    1 PSCFDKIKMGFMMGGAVGGAFGALFGTFSAFRYGARGRGLMRTLGKYMLGSGATFGFFMSIGSVIRC   67 (67)
T ss_pred             CcHHHHHHHHHHHhhHHHhhhhhhhhhHHHhccCCCCcchHhHHhHHHhcchhHHHHHHhhhccccC
Confidence            6799999999999999999999999999999888888888888888888888888866554444433

An increase or imbalance in ROS alters the intracellular redox homeostasis, triggers DNA damage, and may contribute to cancer development and progression. This entry contains the mitochondrial protein, reactive oxygen species modulator 1 (Romo1), that is responsible for increasing the level of ROS in cells. In various cancer cell lines with elevated levels of ROS there is also an increased abundance of Romo1 []. Increased Romo1 expression can have a number of other affects including: inducing premature senescence of cultured human fibroblasts [, ] and increased resistance to 5-fluorouracil [].

>KOG4096 consensus Uncharacterized conserved protein [Function unknown]

Probab=97.10  E-value=0.0012  Score=45.81  Aligned_cols=70  Identities=17%  Similarity=0.250  Sum_probs=63.3

Q ss_pred             ccCchHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHHHHHhcccchhHHHHHHHhhcchhh
Q 036056           21 TGNDFLNHTVDGFLKIGAVAATRAVAEDTYNIVKGGNFSRHHLEHALKKMCKEGAYWGTVAGVYVGMEYG   90 (146)
Q Consensus        21 ~~~pc~~rtv~~~l~gg~~Ga~~Gl~~ga~~~~~~g~~~k~~~~~~lk~~g~~g~~~g~vggvfsg~ec~   90 (146)
                      ..+.|..|.=.++.+|..+|.+-|+..|.|...+.+..++..++.+-|.|-..+..||++=++=+++.|.
T Consensus         3 ~qpSc~dKikmG~~mG~avG~a~G~lfGgf~~lR~g~~g~~~vr~iGkt~~~SagtFG~FM~igs~Ir~~   72 (75)
T KOG4096|consen    3 QQPSCFDKIKMGLMMGGAVGGATGALFGGFAALRYGPRGRGLVRTIGKTMLQSAGTFGLFMGIGSGIRCG   72 (75)
T ss_pred             CCccHHHHHHHHHHHHhhhhhhhhhhccchhheeecCChhHHHHHHhHHHHhccchhhhhhhhhhheecC
Confidence            3588999999999999999999999999999999999898888888888888899999888888888775

>KOG4608 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.82  E-value=0.00028  Score=58.89  Aligned_cols=56  Identities=18%  Similarity=0.384  Sum_probs=46.0

Q ss_pred             HHHHHHhcccchhHH----HHHHHhhcchhhhhhhhhccchhHHHHHHHHHHHHhhhccC
Q 036056           64 EHALKKMCKEGAYWG----TVAGVYVGMEYGVEKVRGTKDWKNAMIGGAFTGALVSAVGK  119 (146)
Q Consensus        64 ~~~lk~~g~~g~~~g----~vggvfsg~ec~ie~~Rgk~D~~Ns~~aGa~TGa~l~~~~G  119 (146)
                      .+..+...|.|..||    ++-+.|-++.-.+..+|+|||.+|=+++|++||+++...=|
T Consensus       121 d~air~farGgf~~G~R~alfttSff~l~t~l~vyRgk~a~~~fvaaga~tgsvF~~~~g  180 (270)
T KOG4608|consen  121 DAAIRGFARGGFRWGWRTALFTTSFFTLNTSLNVYRGKDALSHFVAAGAVTGSVFRINVG  180 (270)
T ss_pred             HHHHHHHhhccccceeEEeeehhhHHHHHHHHHHHcCchhhhhhhccccceeeeEEeehh
Confidence            344455777777775    67777788888899999999999999999999999987766

>PF12732 YtxH: YtxH-like protein; InterPro: IPR024623 This family of uncharacterised proteins is found in bacteria

Probab=91.25  E-value=0.29  Score=33.04  Aligned_cols=40  Identities=20%  Similarity=0.149  Sum_probs=30.5

Q ss_pred             HHHHHHHHHHHHHHHHHhhhhcCCCcchHHHHHHHHHhcc
Q 036056           33 FLKIGAVAATRAVAEDTYNIVKGGNFSRHHLEHALKKMCK   72 (146)
Q Consensus        33 ~l~gg~~Ga~~Gl~~ga~~~~~~g~~~k~~~~~~lk~~g~   72 (146)
                      |+.|.++|++.|...+.+..|+.|.-.|.++....+.+..
T Consensus         1 F~~g~l~Ga~~Ga~~glL~aP~sG~e~R~~l~~~~~~~~~   40 (74)
T PF12732_consen    1 FLLGFLAGAAAGAAAGLLFAPKSGKETREKLKDKAEDLKD   40 (74)
T ss_pred             CHHHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHHHHHH
Confidence            5778888888888888888888887777777777666443

Proteins in this family are typically between 100 and 143 amino acids in length. The N-terminal region is the most conserved.

>TIGR00980 3a0801so1tim17 mitochondrial import inner membrane translocase subunit tim17

Probab=86.31  E-value=5.8  Score=31.50  Aligned_cols=24  Identities=13%  Similarity=0.037  Sum_probs=11.8

Q ss_pred             hHHHHHHHHHHHHHHHHHHHHHHH
Q 036056           25 FLNHTVDGFLKIGAVAATRAVAED   48 (146)
Q Consensus        25 c~~rtv~~~l~gg~~Ga~~Gl~~g   48 (146)
                      |-.--..+.+.|+..+.+.|+...
T Consensus        17 ~G~af~~G~~~G~~~g~~~G~rns   40 (170)
T TIGR00980        17 FGGAFAMGTIGGSIFQAFKGFRNS   40 (170)
T ss_pred             hhHHHHHHHHHHHHHHHHHHhhcC
Confidence            333444555555555555554443

>PF05818 TraT: Enterobacterial TraT complement resistance protein; InterPro: IPR008874 The traT gene is one of the F factor transfer genes and encodes an outer membrane protein which is involved in interactions between Escherichia coli and its surroundings []

Probab=83.32  E-value=1.9  Score=35.54  Aligned_cols=40  Identities=25%  Similarity=0.375  Sum_probs=27.5

Q ss_pred             HHHHHHHHHHHhhhccCCchhHHHHhHHHHHHHHHHHHHh
Q 036056          103 AMIGGAFTGALVSAVGKNNRDKVVMDALTGGAIAAAAEFL  142 (146)
Q Consensus       103 s~~aGa~TGa~l~~~~G~~~~~~v~~ai~gaa~s~aie~~  142 (146)
                      +.++|+++|+.++...++....++|.++.|+++..++|-+
T Consensus        89 ga~~Ga~~G~~~g~~~~~~~g~~~G~GlaGalig~~ada~  128 (215)
T PF05818_consen   89 GALAGAATGAAIGAYNSGSAGAAIGAGLAGALIGMIADAM  128 (215)
T ss_pred             hHHHHhHHhhhhccccCCccchhhhhhHHHhHHHHHHhhh
Confidence            5677777777776444325667888677778888887743

The protein plays a role in preventing unproductive conjugation between bacteria carrying like plasmids.; GO: 0046999 regulation of conjugation, 0019867 outer membrane

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

No hit with probability above 80.00

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00