Citrus Sinensis ID: 036072
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in SWISS-PROT Database Detected by BLAST 
Original result of BLAST against SWISS-PROT Database
| ID | Alignment graph | Length |
Definition |
RBH(Q2H) |
RBH(H2Q) |
Q cover |
H cover |
Identity |
E-value |
| Query | 631 | 2.2.26 [Sep-21-2011] | |||||||
| Q9LZP3 | 599 | Pentatricopeptide repeat- | yes | no | 0.841 | 0.886 | 0.597 | 0.0 | |
| Q3EAF8 | 599 | Pentatricopeptide repeat- | yes | no | 0.835 | 0.879 | 0.603 | 0.0 | |
| Q9LEQ7 | 598 | Pentatricopeptide repeat- | yes | no | 0.836 | 0.882 | 0.605 | 0.0 | |
| Q9FVX2 | 517 | Pentatricopeptide repeat- | no | no | 0.676 | 0.825 | 0.304 | 2e-60 | |
| Q9FZD4 | 505 | Putative pentatricopeptid | no | no | 0.660 | 0.825 | 0.312 | 5e-58 | |
| Q9C9A2 | 510 | Pentatricopeptide repeat- | no | no | 0.675 | 0.835 | 0.298 | 9e-58 | |
| P0C8A0 | 638 | Pentatricopeptide repeat- | no | no | 0.622 | 0.615 | 0.309 | 1e-56 | |
| Q9FX35 | 568 | Pentatricopeptide repeat- | no | no | 0.651 | 0.723 | 0.283 | 2e-55 | |
| Q9FH87 | 637 | Putative pentatricopeptid | no | no | 0.618 | 0.612 | 0.300 | 4e-55 | |
| Q9LFQ4 | 572 | Pentatricopeptide repeat- | no | no | 0.676 | 0.746 | 0.289 | 5e-51 |
| >sp|Q9LZP3|PP293_ARATH Pentatricopeptide repeat-containing protein At3g62470, mitochondrial OS=Arabidopsis thaliana GN=At3g62470 PE=2 SV=1 | Back alignment and function desciption |
|---|
Score = 716 bits (1847), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/591 (59%), Positives = 440/591 (74%), Gaps = 60/591 (10%)
Query: 59 RVHGDGGAKCSRGSTLSLSRLLHYSSYCSLYRSHCQVPCLLPHSSSLHSLQKVLLNKSTN 118
RV G G + R S SR++H S+Y YR Q+P LPHSS
Sbjct: 41 RVIGGRGEEEVRFSGALFSRMIHSSTYHP-YR---QIP--LPHSS--------------- 79
Query: 119 VVASSLTNHNLATNILDSN--CVNYRNVSSVTDD--NQDSDGECDGNNSESEITSVSYKS 174
+LD++ C + + SS D +++ + ECD N+ E+ ++ V +S
Sbjct: 80 ------------VQLLDASLGCRGFSSGSSNVSDGCDEEVESECD-NDEETGVSCV--ES 124
Query: 175 TADPREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCW 234
+ +P E+ERVCKVIDELF+LDRNMEAVLDE ++LSH+L+V+VLERFRHAR+PAFRFFCW
Sbjct: 125 STNPEEVERVCKVIDELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFCW 184
Query: 235 AGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKE 294
A ++ GFAH+SRTYNSMMSIL + RQFETMVS+LEEMG KGLL+METF IAM AFAAAKE
Sbjct: 185 AAERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAAKE 244
Query: 295 RKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVL 354
RKKAV IFELM KYKFK GV+TINCLL++LGR+KL KEAQ+LFDKLK RFTPN+ TYTVL
Sbjct: 245 RKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVL 304
Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
L GWCRV+NL+EA R+WN+MID+G KPD+VAHN+MLEGLL+ K+SDAIKLF VMK+KGP
Sbjct: 305 LNGWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGP 364
Query: 415 SPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYD 454
PNVRSYTIMI FCKQ +AAVYTCLITGFG ++++D VY+
Sbjct: 365 CPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYE 424
Query: 455 LLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
LLKEM+E+G PPDG TYNALIKLM QKMP+ A RIY +M+++ +P+IHT+NMIMKSYF
Sbjct: 425 LLKEMQEKGHPPDGKTYNALIKLMANQKMPEHATRIYNKMIQNEIEPSIHTFNMIMKSYF 484
Query: 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVL 574
NYEMGR VW+EMI++G CPDDNSYTVLI GLI + +S EA +YLEEML+KGMK P++
Sbjct: 485 MARNYEMGRAVWEEMIKKGICPDDNSYTVLIRGLIGEGKSREACRYLEEMLDKGMKTPLI 544
Query: 575 DYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARWAETTKNRVYRK 625
DYNKFAAD R G+ + +ELAQ+ +FSGKF + + ARWA+ T+ R ++
Sbjct: 545 DYNKFAADFHRGGQPEIFEELAQRAKFSGKFAAAEIFARWAQMTRRRFKQR 595
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q3EAF8|PP294_ARATH Pentatricopeptide repeat-containing protein At3g62540, mitochondrial OS=Arabidopsis thaliana GN=At3g62540 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 713 bits (1841), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/587 (60%), Positives = 436/587 (74%), Gaps = 60/587 (10%)
Query: 59 RVHGDGGAKCSRGSTLSLSRLLHYSSYCSLYRSHCQVPCLLPHSSSLHSLQKVLLNKSTN 118
RV G G + R S SR++H S+Y YR Q+P LPHSS
Sbjct: 41 RVIGGRGEEEVRFSGALFSRMIHSSTY-HPYR---QIP--LPHSS--------------- 79
Query: 119 VVASSLTNHNLATNILDSN--CVNYRNVSSVTDD--NQDSDGECDGNNSESEITSVSYKS 174
+LD++ C + + SS D +++ + ECD N+ E+ ++ V +S
Sbjct: 80 ------------VQLLDASLGCRGFSSGSSNVSDGCDEEVESECD-NDEETGVSCV--ES 124
Query: 175 TADPREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCW 234
+ +P E+ERVCKVIDELF+LDRNMEAVLDE ++LSH+L+V+VLERFRHAR+PAFRFFCW
Sbjct: 125 STNPEEVERVCKVIDELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFCW 184
Query: 235 AGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKE 294
A ++ GFAH SRTYNSMMSIL + RQFETMVS+LEEMG KGLL+METF IAM AFAAAKE
Sbjct: 185 AAERQGFAHASRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAAKE 244
Query: 295 RKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVL 354
RKKAV IFELM KYKFK GV+TINCLL++LGR+KL KEAQ+LFDKLK RFTPN+ TYTVL
Sbjct: 245 RKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVL 304
Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
L GWCRV+NL+EA R+WN+MID G KPD+VAHN+MLEGLL+ K+SDAIKLF VMK+KGP
Sbjct: 305 LNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGP 364
Query: 415 SPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYD 454
PNVRSYTIMI FCKQ +AAVYTCLITGFG ++++D VY+
Sbjct: 365 CPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYE 424
Query: 455 LLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
LLKEM+E+G PPDG TYNALIKLM QKMP+ RIY +M+++ +P+IHT+NMIMKSYF
Sbjct: 425 LLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYF 484
Query: 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVL 574
NYEMGR VWDEMI++G CPDDNSYTVLI GLIS+ +S EA +YLEEML+KGMK P++
Sbjct: 485 VARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKGMKTPLI 544
Query: 575 DYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARWAETTKNR 621
DYNKFAAD R G+ + +ELAQ+ +FSGKF + + ARWA+ T+ R
Sbjct: 545 DYNKFAADFHRGGQPEIFEELAQRAKFSGKFAAAEIFARWAQMTRRR 591
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LEQ7|PP382_ARATH Pentatricopeptide repeat-containing protein At5g14820, mitochondrial OS=Arabidopsis thaliana GN=At5g14820 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 712 bits (1838), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/585 (60%), Positives = 436/585 (74%), Gaps = 57/585 (9%)
Query: 59 RVHGDGGAKCSRGSTLSLSRLLHYSSYCSLYRSHCQVPCLLPHSSSLHSLQKVLLNKSTN 118
RV G G + R S SR++H S+Y YR Q+P LPHS L
Sbjct: 41 RVIGGRGEEEVRFSGALFSRMIHSSTY-HPYR---QIP--LPHSVQL------------- 81
Query: 119 VVASSLTNHNLATNILDSNCVNYRNVSSVTDD--NQDSDGECDGNNSESEITSVSYKSTA 176
+ +SL C + + SS D +++ + ECD N+ E+ ++ V +S+
Sbjct: 82 -LDASL------------GCRGFSSGSSNVSDGCDEEVESECD-NDEETGVSCV--ESST 125
Query: 177 DPREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAG 236
+P E+ERVCKVIDELF+LDRNMEAVLDE ++LSH+L+V+VLERFRHAR+PAFRFFCWA
Sbjct: 126 NPEEVERVCKVIDELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWAA 185
Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERK 296
++ GFAH+SRTYNSMMSIL + RQFETMVS+LEEMG KGLL+METF IAM AFAAAKERK
Sbjct: 186 ERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAAKERK 245
Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLG 356
KAV IFELM KYKFK GV+TINCLL++LGR+KL KEAQ+LFDKLK RFTPN+ TYTVLL
Sbjct: 246 KAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVLLN 305
Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
GWCRV+NL+EA R+WN+MID G KPD+VAHN+MLEGLL+ K+SDAIKLF VMK+KGP P
Sbjct: 306 GWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCP 365
Query: 417 NVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLL 456
NVRSYTIMI FCKQ +AAVYTCLITGFG ++++D VY+LL
Sbjct: 366 NVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELL 425
Query: 457 KEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
KEM+E+G PPDG TYNALIKLM QKMP+ RIY +M+++ +P+IHT+NMIMKSYF
Sbjct: 426 KEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVA 485
Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
NYEMGR VWDEMI++G CPDDNSYTVLI GLIS+ +S EA +YLEEML+KGMK P++DY
Sbjct: 486 RNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKGMKTPLIDY 545
Query: 577 NKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARWAETTKNR 621
NKFAAD R G+ + +ELAQ+ +FSGKF + + ARWA+ T+ R
Sbjct: 546 NKFAADFHRGGQPEIFEELAQRAKFSGKFAAAEIFARWAQMTRRR 590
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Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FVX2|PP129_ARATH Pentatricopeptide repeat-containing protein At1g77360, mitochondrial OS=Arabidopsis thaliana GN=At1g77360 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 234 bits (597), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 137/450 (30%), Positives = 240/450 (53%), Gaps = 23/450 (5%)
Query: 172 YKSTADPREIERVCKVIDELF--SLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAF 229
Y S+ R++ V K I ++ S +++ LD+ G+ +S +V DVL RFR+A +
Sbjct: 59 YSSSEQVRDVADVAKNISKVLMSSPQLVLDSALDQSGLRVSQEVVEDVLNRFRNAGLLTY 118
Query: 230 RFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAF 289
RFF W+ + + H+ R Y+ M+ + RQ++ M ++ M +K +L++ETF I M +
Sbjct: 119 RFFQWSEKQRHYEHSVRAYHMMIESTAKIRQYKLMWDLINAMRKKKMLNVETFCIVMRKY 178
Query: 290 AAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLT 349
A A++ +A+ F +M KY + N LL L +SK ++AQ +F+ ++ RFTP+
Sbjct: 179 ARAQKVDEAIYAFNVMEKYDLPPNLVAFNGLLSALCKSKNVRKAQEVFENMRDRFTPDSK 238
Query: 350 TYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVM 409
TY++LL GW + NL +A V+ EMID G PD+V ++IM++ L K G+ +A+ + M
Sbjct: 239 TYSILLEGWGKEPNLPKAREVFREMIDAGCHPDIVTYSIMVDILCKAGRVDEALGIVRSM 298
Query: 410 KAKGPSPNVRSYTIMIWKFCKQN--------------------AAVYTCLITGFGNRRRM 449
P Y++++ + +N AV+ LI F RM
Sbjct: 299 DPSICKPTTFIYSVLVHTYGTENRLEEAVDTFLEMERSGMKADVAVFNSLIGAFCKANRM 358
Query: 450 DIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMI 509
VY +LKEM+ +G P+ + N +++ + + DEA ++++M++ +P TY M+
Sbjct: 359 KNVYRVLKEMKSKGVTPNSKSCNIILRHLIERGEKDEAFDVFRKMIKVC-EPDADTYTMV 417
Query: 510 MKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
+K + + E KVW M ++G P ++++VLI GL + + +A LEEM+E G+
Sbjct: 418 IKMFCEKKEMETADKVWKYMRKKGVFPSMHTFSVLINGLCEERTTQKACVLLEEMIEMGI 477
Query: 570 KAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
+ + + + L + R VL L +KM
Sbjct: 478 RPSGVTFGRLRQLLIKEEREDVLKFLNEKM 507
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FZD4|PPR59_ARATH Putative pentatricopeptide repeat-containing protein At1g26500 OS=Arabidopsis thaliana GN=At1g26500 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 226 bits (576), Expect = 5e-58, Method: Compositional matrix adjust.
Identities = 143/458 (31%), Positives = 245/458 (53%), Gaps = 41/458 (8%)
Query: 183 RVCKVI-DELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWA-GDKPG 240
RVC ++ + S D + + L L+H + V F + RP RFF ++ P
Sbjct: 48 RVCTILYQQQNSPDSRLVSKLSSTKFQLTHEFFLQVCNNFPLSWRPVHRFFLYSQTHHPD 107
Query: 241 FAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVA 300
F H S T N M++I+G +R + + +E+G++GL++ +TF+I + A+A+E KK V
Sbjct: 108 FTHTSTTSNKMLAIIGNSRNMDLFWELAQEIGKRGLVNDKTFRIVLKTLASARELKKCVN 167
Query: 301 IFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCR 360
F LMN + + V+T+N +E L + KL +EA+ +F KLK P+ TY ++ G+C
Sbjct: 168 YFHLMNGFGYLYNVETMNRGVETLCKEKLVEEAKFVFIKLKEFIKPDEITYRTMIQGFCD 227
Query: 361 VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK-GPSPNVR 419
V +L+EA ++WN M+D+GF D+ A ++E LLK + +A K+F VM +K G +
Sbjct: 228 VGDLIEAAKLWNLMMDEGFDVDIEAGKKIMETLLKKNQFDEASKVFYVMVSKRGGDLDGG 287
Query: 420 SYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEM 459
Y +MI CK + + LI G +RR+ Y L++ +
Sbjct: 288 FYRVMIDWLCKNGRIDMARKVFDEMRERGVYVDNLTWASLIYGLLVKRRVVEAYGLVEGV 347
Query: 460 EERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518
E PD Y+ LIK L+KI++ EA ++++M++ G +P +HTY M+++ +
Sbjct: 348 EN----PDISIYHGLIKGLVKIKR-ASEATEVFRKMIQRGCEPIMHTYLMLLQGH----- 397
Query: 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNK 578
+GR+ R+G P N T+ +GG+I + E KY+E L++G++ P DY+K
Sbjct: 398 --LGRRG-----RKGPDPLVNFDTIFVGGMIKAGKRLETTKYIERTLKRGLEVPRFDYSK 450
Query: 579 FAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARWAE 616
F S + +E+A+K+R F+++++ R+ E
Sbjct: 451 FLHYYSNEEGVVMFEEMAKKLREVSLFDLADIFQRYGE 488
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9C9A2|PP112_ARATH Pentatricopeptide repeat-containing protein At1g71060, mitochondrial OS=Arabidopsis thaliana GN=At1g71060 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 225 bits (573), Expect = 9e-58, Method: Compositional matrix adjust.
Identities = 136/456 (29%), Positives = 247/456 (54%), Gaps = 30/456 (6%)
Query: 168 TSVSYKSTAD--PREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHAR 225
+SV + +A+ ++ ER+CK++ + D +E +L+E + LS L+ +VL++ +A
Sbjct: 51 SSVETQVSANDASQDAERICKILTKF--TDSKVETLLNEASVKLSPALIEEVLKKLSNAG 108
Query: 226 RPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIA 285
A F WA ++ GF H + YN+++ LG+ +QF+ + S++++M K LLS ETF +
Sbjct: 109 VLALSVFKWAENQKGFKHTTSNYNALIESLGKIKQFKLIWSLVDDMKAKKLLSKETFALI 168
Query: 286 MNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL-KHRF 344
+A A++ K+A+ F M ++ FK N +L+ L +S+ +AQ +FDK+ K RF
Sbjct: 169 SRRYARARKVKEAIGAFHKMEEFGFKMESSDFNRMLDTLSKSRNVGDAQKVFDKMKKKRF 228
Query: 345 TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIK 404
P++ +YT+LL GW + NL+ V EM D+GF+PDVVA+ I++ K K +AI+
Sbjct: 229 EPDIKSYTILLEGWGQELNLLRVDEVNREMKDEGFEPDVVAYGIIINAHCKAKKYEEAIR 288
Query: 405 LFEVMKAKGPSPNVRSYTIMI------------WKFCKQN--------AAVYTCLITGFG 444
F M+ + P+ + +I +F +++ A Y L+ +
Sbjct: 289 FFNEMEQRNCKPSPHIFCSLINGLGSEKKLNDALEFFERSKSSGFPLEAPTYNALVGAYC 348
Query: 445 NRRRMDIVYDLLKEMEERGCPPDGLTYNALI-KLMKIQKMPDEAVRIYKEMVRSGFKPTI 503
+RM+ Y + EM +G P+ TY+ ++ L+++Q+ EA +Y+ M +PT+
Sbjct: 349 WSQRMEDAYKTVDEMRLKGVGPNARTYDIILHHLIRMQR-SKEAYEVYQTM---SCEPTV 404
Query: 504 HTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEE 563
TY ++++ + +M K+WDEM +G P + ++ LI L +++ EA +Y E
Sbjct: 405 STYEIMVRMFCNKERLDMAIKIWDEMKGKGVLPGMHMFSSLITALCHENKLDEACEYFNE 464
Query: 564 MLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599
ML+ G++ P +++ L GR + +L KM
Sbjct: 465 MLDVGIRPPGHMFSRLKQTLLDEGRKDKVTDLVVKM 500
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|P0C8A0|PP275_ARATH Pentatricopeptide repeat-containing protein At3g49730 OS=Arabidopsis thaliana GN=At3g49730 PE=2 SV=1 | Back alignment and function description |
|---|
Score = 221 bits (563), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 129/417 (30%), Positives = 214/417 (51%), Gaps = 24/417 (5%)
Query: 180 EIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKP 239
E+E++ +++ S +E L+E GI+L L++ VL R A +RFF WA +P
Sbjct: 66 EVEKIYRILRNHHSRVPKLELALNESGIDLRPGLIIRVLSRCGDAGNLGYRFFLWATKQP 125
Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG--LLSMETFKIAMNAFAAAKERKK 297
G+ H+ SM+ IL + RQF + ++EEM + L+ E F + M FA+A KK
Sbjct: 126 GYFHSYEVCKSMVMILSKMRQFGAVWGLIEEMRKTNPELIEPELFVVLMRRFASANMVKK 185
Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
AV + + M KY + CLL+ L ++ KEA +F+ ++ +F PNL +T LL G
Sbjct: 186 AVEVLDEMPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFEDMREKFPPNLRYFTSLLYG 245
Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
WCR LMEA V +M + G +PD+V +L G GK +DA L M+ +G PN
Sbjct: 246 WCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRGFEPN 305
Query: 418 VRSYTIMIWKFCK---------------------QNAAVYTCLITGFGNRRRMDIVYDLL 456
V YT++I C+ + YT LI+GF +D Y +L
Sbjct: 306 VNCYTVLIQALCRTEKRMDEAMRVFVEMERYGCEADIVTYTALISGFCKWGMIDKGYSVL 365
Query: 457 KEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
+M ++G P +TY ++ + ++ +E + + ++M R G P + YN++++ +
Sbjct: 366 DDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPDLLIYNVVIRLACKL 425
Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM-KAP 572
G + ++W+EM G P +++ ++I G SQ EA + +EM+ +G+ AP
Sbjct: 426 GEVKEAVRLWNEMEANGLSPGVDTFVIMINGFTSQGFLIEACNHFKEMVSRGIFSAP 482
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FX35|PP117_ARATH Pentatricopeptide repeat-containing protein At1g73400, mitochondrial OS=Arabidopsis thaliana GN=At1g73400 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 218 bits (554), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 132/465 (28%), Positives = 228/465 (49%), Gaps = 54/465 (11%)
Query: 197 NMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILG 256
+ME LDE ++L+ +V +L+R ++ + AFRFF WAG + ++H YN M+ IL
Sbjct: 111 DMEKALDESSVDLTTPVVCKILQRLQYEEKTAFRFFTWAGHQEHYSHEPIAYNEMIDILS 170
Query: 257 ----RARQFETMVSMLEEMGEKG--------LLSM-----ETFKIAMNAFAAAKERKKAV 299
+ +QF ++ ML+ M LL + E + + FA +RK+
Sbjct: 171 STKYKNKQFRIVIDMLDYMKRNNKTVVLVDVLLEILRKYCERYLTHVQKFA---KRKRI- 226
Query: 300 AIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWC 359
+ K + ++ N LL+ L + L KE + L +++HR P+ T+ VL GWC
Sbjct: 227 -------RVKTQPEINAFNMLLDALCKCGLVKEGEALLRRMRHRVKPDANTFNVLFFGWC 279
Query: 360 RVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS---P 416
RV++ +A ++ EMI+ G KP+ + ++ + G +A LF+ M KG + P
Sbjct: 280 RVRDPKKAMKLLEEMIEAGHKPENFTYCAAIDTFCQAGMVDEAADLFDFMITKGSAVSAP 339
Query: 417 NVRSYTIMIWKFCKQNAA--------------------VYTCLITGFGNRRRMDIVYDLL 456
+++ +MI K + A Y +I G ++D Y L
Sbjct: 340 TAKTFALMIVALAKNDKAEECFELIGRMISTGCLPDVSTYKDVIEGMCMAEKVDEAYKFL 399
Query: 457 KEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
EM +G PPD +TYN ++++ + DEA+++Y MV S P++ TYNM++ +F+
Sbjct: 400 DEMSNKGYPPDIVTYNCFLRVLCENRKTDEALKLYGRMVESRCAPSVQTYNMLISMFFEM 459
Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
+ + W EM +R C D +Y +I GL R+ EA LEE++ KG+K P +
Sbjct: 460 DDPDGAFNTWTEMDKRDCVQDVETYCAMINGLFDCHRAKEACFLLEEVVNKGLKLPYRVF 519
Query: 577 NKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARWAETTKNR 621
+ F LS G + ++++ M+ KF ++ R+A + K +
Sbjct: 520 DSFLMRLSEVGNLKAIHKVSEHMK---KFYNHSMARRFALSEKRK 561
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9FH87|PP447_ARATH Putative pentatricopeptide repeat-containing protein At5g65820 OS=Arabidopsis thaliana GN=At5g65820 PE=3 SV=1 | Back alignment and function description |
|---|
Score = 216 bits (551), Expect = 4e-55, Method: Compositional matrix adjust.
Identities = 124/412 (30%), Positives = 214/412 (51%), Gaps = 22/412 (5%)
Query: 180 EIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKP 239
++E+ +++ + S +E L+E G+ L L+ VL R A +RFF WA +P
Sbjct: 82 DVEKSYRILRKFHSRVPKLELALNESGVELRPGLIERVLNRCGDAGNLGYRFFVWAAKQP 141
Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG--LLSMETFKIAMNAFAAAKERKK 297
+ H+ Y SM+ IL + RQF + ++EEM ++ L+ E F + + FA+A KK
Sbjct: 142 RYCHSIEVYKSMVKILSKMRQFGAVWGLIEEMRKENPQLIEPELFVVLVQRFASADMVKK 201
Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
A+ + + M K+ F+ CLL+ L + K+A LF+ ++ RF NL +T LL G
Sbjct: 202 AIEVLDEMPKFGFEPDEYVFGCLLDALCKHGSVKDAAKLFEDMRMRFPVNLRYFTSLLYG 261
Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
WCRV +MEA V +M + GF+PD+V + +L G GK +DA L M+ +G PN
Sbjct: 262 WCRVGKMMEAKYVLVQMNEAGFEPDIVDYTNLLSGYANAGKMADAYDLLRDMRRRGFEPN 321
Query: 418 VRSYTIMIWKFCK--------------------QNAAVYTCLITGFGNRRRMDIVYDLLK 457
YT++I CK + YT L++GF ++D Y +L
Sbjct: 322 ANCYTVLIQALCKVDRMEEAMKVFVEMERYECEADVVTYTALVSGFCKWGKIDKCYIVLD 381
Query: 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
+M ++G P LTY ++ + ++ +E + + ++M + + P I YN++++ + G
Sbjct: 382 DMIKKGLMPSELTYMHIMVAHEKKESFEECLELMEKMRQIEYHPDIGIYNVVIRLACKLG 441
Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
+ ++W+EM G P +++ ++I GL SQ EA + +EM+ +G+
Sbjct: 442 EVKEAVRLWNEMEENGLSPGVDTFVIMINGLASQGCLLEASDHFKEMVTRGL 493
|
Arabidopsis thaliana (taxid: 3702) |
| >sp|Q9LFQ4|PP383_ARATH Pentatricopeptide repeat-containing protein At5g15010, mitochondrial OS=Arabidopsis thaliana GN=At5g15010 PE=2 SV=2 | Back alignment and function description |
|---|
Score = 202 bits (515), Expect = 5e-51, Method: Compositional matrix adjust.
Identities = 135/466 (28%), Positives = 231/466 (49%), Gaps = 39/466 (8%)
Query: 129 LATNILDSNCVNYRNVSSVTDDNQDSDGECDGNNSESEITSVSYKSTADPREIERVCKVI 188
+T+I DS V + + DD D D C ++ E+ S ++ ++ K++
Sbjct: 57 FSTSIADSEQVGFTRSNIEKDDESDIDLGCSISD---ELVS---------EDVGKISKLV 104
Query: 189 DELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTY 248
+ S + + L+EC + S+ LVV++L R R+ AF FF WAG + G+ + R Y
Sbjct: 105 KDCGSDRKELRNKLEECDVKPSNELVVEILSRVRNDWETAFTFFVWAGKQQGYVRSVREY 164
Query: 249 NSMMSILGRARQFETMVSMLEEMGE--KGLLSMETFKIAMNAFAAAKERKKAVAIFELMN 306
+SM+SILG+ R+F+T ++++EM + L++ +T I + + A + KA+ F
Sbjct: 165 HSMISILGKMRKFDTAWTLIDEMRKFSPSLVNSQTLLIMIRKYCAVHDVGKAINTFHAYK 224
Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRV-KNLM 365
++K + G+D LL L R K +A L K ++ + ++ ++L GWC V +
Sbjct: 225 RFKLEMGIDDFQSLLSALCRYKNVSDAGHLIFCNKDKYPFDAKSFNIVLNGWCNVIGSPR 284
Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
EA RVW EM + G K DVV+++ M+ K G + +KLF+ MK + P+ + Y ++
Sbjct: 285 EAERVWMEMGNVGVKHDVVSYSSMISCYSKGGSLNKVLKLFDRMKKECIEPDRKVYNAVV 344
Query: 426 WKFCKQ---------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
K N Y LI R+ + + EM E+G
Sbjct: 345 HALAKASFVSEARNLMKTMEEEKGIEPNVVTYNSLIKPLCKARKTEEAKQVFDEMLEKGL 404
Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
P TY+A M+I + +E + +M + G +PT+ TY M+++ + +++
Sbjct: 405 FPTIRTYHAF---MRILRTGEEVFELLAKMRKMGCEPTVETYIMLIRKLCRWRDFDNVLL 461
Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMK 570
+WDEM + PD +SY V+I GL + EAY Y +EM +KGM+
Sbjct: 462 LWDEMKEKTVGPDLSSYIVMIHGLFLNGKIEEAYGYYKEMKDKGMR 507
|
Arabidopsis thaliana (taxid: 3702) |
Close Homologs in the Non-Redundant Database Detected by BLAST
Original result of BLAST against Nonredundant Database
| GI | Alignment Graph | Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 631 | ||||||
| 356549210 | 648 | PREDICTED: pentatricopeptide repeat-cont | 0.944 | 0.919 | 0.619 | 0.0 | |
| 255548471 | 533 | pentatricopeptide repeat-containing prot | 0.770 | 0.911 | 0.714 | 0.0 | |
| 224128340 | 540 | predicted protein [Populus trichocarpa] | 0.746 | 0.872 | 0.708 | 0.0 | |
| 147862837 | 927 | hypothetical protein VITISV_028672 [Viti | 0.866 | 0.590 | 0.616 | 0.0 | |
| 225447826 | 679 | PREDICTED: pentatricopeptide repeat-cont | 0.866 | 0.805 | 0.613 | 0.0 | |
| 449454008 | 621 | PREDICTED: pentatricopeptide repeat-cont | 0.849 | 0.863 | 0.617 | 0.0 | |
| 356561933 | 510 | PREDICTED: LOW QUALITY PROTEIN: pentatri | 0.724 | 0.896 | 0.714 | 0.0 | |
| 15228767 | 599 | pentatricopeptide repeat-containing prot | 0.841 | 0.886 | 0.597 | 0.0 | |
| 15228788 | 599 | pentatricopeptide repeat-containing prot | 0.835 | 0.879 | 0.603 | 0.0 | |
| 15241508 | 598 | pentatricopeptide repeat-containing prot | 0.836 | 0.882 | 0.605 | 0.0 |
| >gi|356549210|ref|XP_003542990.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 778 bits (2008), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 398/642 (61%), Positives = 473/642 (73%), Gaps = 46/642 (7%)
Query: 11 ISILLGHSLDSQSHYSTLSRSYGNGYGQLYSTTTELLSLNQR---QRRGAKRVHGDGGAK 67
+++ L H DSQ Y G ++STT +L SL+QR QRRG + +
Sbjct: 18 LTLFLRHHTDSQLPY---------GPCCVFSTT-KLRSLHQRRPPQRRGEQ-------VR 60
Query: 68 CSRGSTLSLSRLLHYSSYCSLYRSHCQVPCLLPHSSSLHSLQKVLLNKSTNVVASSLTNH 127
GS+L LSRLL S C+ + S CQ+P LLPH S L +LQK LL S+L +
Sbjct: 61 LPCGSSLPLSRLLRSSLNCTFHHSRCQIPFLLPHPSPLLTLQKKLLIPHLATF-SALPSS 119
Query: 128 NLATNILDSNCVNYRNVSSVTD---DNQDSDGECDGNNSESEITSVSYKSTADPREIERV 184
N + R +S D +N D D + + + VS +S ADP E+ERV
Sbjct: 120 PFHEKFPFLN--SPRTFASNADSGVENDDDDDDGGDGDKGYDGRGVSGESCADPVEVERV 177
Query: 185 CKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHN 244
CKVIDELF+LDRNME VLDECG+ LSH+LVVDVL+RF+HAR+PAFRFFCWAG +PGFAH+
Sbjct: 178 CKVIDELFALDRNMEVVLDECGVRLSHDLVVDVLQRFKHARKPAFRFFCWAGKRPGFAHD 237
Query: 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFEL 304
SRTYN MM +LGR RQFETMV+MLEEMGEKGLL+METF IA+ AFA AK+RKKAV IF+L
Sbjct: 238 SRTYNFMMCVLGRTRQFETMVAMLEEMGEKGLLTMETFSIAIKAFAEAKQRKKAVGIFDL 297
Query: 305 MNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNL 364
M KY FK GVD IN LL++L +KL KEAQ +F+KLK RFTP+L TYT+LL GWCR+KNL
Sbjct: 298 MKKYGFKVGVDVINFLLDSLSTAKLGKEAQAVFEKLKDRFTPSLQTYTILLSGWCRLKNL 357
Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
+EAGRVWNEMID+GF PDVVAHN+MLEGLLK K+SDAIKLFE+MKAKGPSPNVRSYTIM
Sbjct: 358 LEAGRVWNEMIDRGFNPDVVAHNVMLEGLLKCKKKSDAIKLFEIMKAKGPSPNVRSYTIM 417
Query: 425 IWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
I FCKQ +AA+YTCLITGFG +++MD+VY LLKEM ERGC
Sbjct: 418 IQDFCKQKLMGEAIEYFDVMVDRGCQPDAALYTCLITGFGRQKKMDMVYSLLKEMRERGC 477
Query: 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524
PPDG TYNALIKLM Q MPD+AVRIYK+M++SG KPTIHTYNMIMKSYF T NYEMG +
Sbjct: 478 PPDGRTYNALIKLMTSQHMPDDAVRIYKKMIQSGIKPTIHTYNMIMKSYFVTKNYEMGHE 537
Query: 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584
+WDEM ++GCCPDDNSY V IGGLI QDRSGEA KYLEEMLEKGMKAP LDYNKFA+D+S
Sbjct: 538 IWDEMHQKGCCPDDNSYIVYIGGLIRQDRSGEACKYLEEMLEKGMKAPKLDYNKFASDIS 597
Query: 585 RAGRSYVLDELAQKMRFSGKFEVSNVLARWAETTKNRVYRKD 626
+ G + +L+ELA+KM F GKFEVSNVLA WA+ K R++
Sbjct: 598 KTGNAVILEELARKMNFVGKFEVSNVLASWADMMKKSAKRRE 639
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|255548471|ref|XP_002515292.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223545772|gb|EEF47276.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] | Back alignment and taxonomy information |
|---|
Score = 751 bits (1940), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 365/511 (71%), Positives = 419/511 (81%), Gaps = 25/511 (4%)
Query: 136 SNCVNYRNVSSVTDDNQDSDGECDGNNSESEITSVSYKSTADPREIERVCKVIDELFSLD 195
S C + + + + DD+ + D +C+ N++ E S+ADP E++RVCKVIDELF+LD
Sbjct: 25 SKCGGFSSDTEI-DDDCNEDNKCESGNNDGE----KINSSADPVEVDRVCKVIDELFALD 79
Query: 196 RNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSIL 255
RNMEAVLDECGINLSH+LV+DVLERF HAR+PAFRFFCWAG+K GF H+SRTYNSMMSIL
Sbjct: 80 RNMEAVLDECGINLSHDLVIDVLERFCHARKPAFRFFCWAGEKQGFEHDSRTYNSMMSIL 139
Query: 256 GRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVD 315
+ RQFET+VSMLEEMG KG+L+M+TF IAM AFAAAKERKKAVA+FELM KY +K GV+
Sbjct: 140 AKTRQFETVVSMLEEMGGKGVLTMDTFSIAMRAFAAAKERKKAVAMFELMKKYNYKVGVE 199
Query: 316 TINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMI 375
TIN LL++LGR+KL KEAQ LF+ LK RFTPNL TYTVLL GWC+VKNLMEAG VWNEMI
Sbjct: 200 TINHLLDSLGRAKLGKEAQALFENLKGRFTPNLRTYTVLLNGWCKVKNLMEAGSVWNEMI 259
Query: 376 DKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ---- 431
DKGFKPD+VAHNIMLEGLL+ +RSDAIKLF VMKAKGPSP+VRSYTI+I C+Q
Sbjct: 260 DKGFKPDIVAHNIMLEGLLRSKQRSDAIKLFMVMKAKGPSPDVRSYTILIRYLCRQSKME 319
Query: 432 ----------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475
+AAVYTCLITGFGNR+RMD+VYDLLKEM+E GCPPDGLTYNALI
Sbjct: 320 EAVEYFQEMIDSGCKPDAAVYTCLITGFGNRKRMDMVYDLLKEMKEEGCPPDGLTYNALI 379
Query: 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535
KLM KMPD+A RIYK+M +SG +PTIHTYNMIMKSYFQT NYEMGR VWDEM R+G C
Sbjct: 380 KLMTRLKMPDDAARIYKKMTQSGIEPTIHTYNMIMKSYFQTRNYEMGRAVWDEMSRKGFC 439
Query: 536 PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDEL 595
PDDNSYTVLIGGLISQ RSGEA KYLEEMLEKGMKAP LDYNKF ADLSR G +L+EL
Sbjct: 440 PDDNSYTVLIGGLISQGRSGEACKYLEEMLEKGMKAPQLDYNKFGADLSRGGNPDILEEL 499
Query: 596 AQKMRFSGKFEVSNVLARWAETTKNRVYRKD 626
AQ+++FSGKF VSNVLA WA + RV R+D
Sbjct: 500 AQRLKFSGKFGVSNVLASWAGMIQKRVKRRD 530
|
Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|224128340|ref|XP_002320305.1| predicted protein [Populus trichocarpa] gi|222861078|gb|EEE98620.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
|---|
Score = 740 bits (1911), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 352/497 (70%), Positives = 410/497 (82%), Gaps = 26/497 (5%)
Query: 149 DDNQDSDGECDGNNSESEITSVSYKSTADPREIERVCKVIDELFSLDRNMEAVLDECGIN 208
D+N +SD N E E KSTADP E+ +VCKVIDELF+LD NMEAVLDECGIN
Sbjct: 50 DENDESD------NCERENKGAIVKSTADPAEVHKVCKVIDELFALDHNMEAVLDECGIN 103
Query: 209 LSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSML 268
LSH+LV++VLERFRHAR+PAFRFFCWA +KPGF H+SRTY+SMM IL +ARQFETM+SML
Sbjct: 104 LSHDLVIEVLERFRHARKPAFRFFCWAAEKPGFVHDSRTYHSMMIILAKARQFETMMSML 163
Query: 269 EEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSK 328
EEMGEK LL+++TF IAM AFAAAKERKKAV IFELM +K++ GV+TIN LL++LGR+K
Sbjct: 164 EEMGEKRLLTLDTFSIAMRAFAAAKERKKAVGIFELMKNHKYRVGVETINALLDSLGRAK 223
Query: 329 LPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNI 388
L KEAQ LF KL+ RFTPNL TYTVLL GWCRVKNLMEAGR+WNEM+D+GFKPD+V HNI
Sbjct: 224 LGKEAQALFGKLEGRFTPNLRTYTVLLNGWCRVKNLMEAGRIWNEMLDEGFKPDIVTHNI 283
Query: 389 MLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ----------------- 431
MLEGLL+ KRSDAIK FEVMKAKGPSP+VRSYTI+I CKQ
Sbjct: 284 MLEGLLRSKKRSDAIKFFEVMKAKGPSPDVRSYTILIRDLCKQTKMKEAVGYFYEMVDSG 343
Query: 432 ---NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAV 488
+AAVYTCL+TG+GN +RMD+VY+LLKEM+E+GCPPDG TYNALIKLM Q+MPD+AV
Sbjct: 344 CHPDAAVYTCLMTGYGNHKRMDMVYELLKEMKEKGCPPDGKTYNALIKLMTSQRMPDDAV 403
Query: 489 RIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGL 548
RIYK+M+++G +P+IH+YNMIMKSYF+ NYEMG VWDEM ++G CPDDNSYTV IGGL
Sbjct: 404 RIYKKMIQNGIEPSIHSYNMIMKSYFRIRNYEMGHAVWDEMSKKGFCPDDNSYTVFIGGL 463
Query: 549 ISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVS 608
ISQ RS EA KYLEEM+EKGMKAP LDYNKFAAD SRAG+ +L+ELAQKM+FSGKFEVS
Sbjct: 464 ISQGRSEEACKYLEEMIEKGMKAPQLDYNKFAADFSRAGKPDILEELAQKMKFSGKFEVS 523
Query: 609 NVLARWAETTKNRVYRK 625
NV ARWAE K RV R+
Sbjct: 524 NVFARWAEMMKKRVKRR 540
|
Source: Populus trichocarpa Species: Populus trichocarpa Genus: Populus Family: Salicaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|147862837|emb|CAN78368.1| hypothetical protein VITISV_028672 [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 737 bits (1902), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 372/603 (61%), Positives = 446/603 (73%), Gaps = 56/603 (9%)
Query: 85 YCSLYRSHCQVPCLLPHSSSL--HSLQKVLLNKSTNVVASSL------------------ 124
+C +R HC+VP LLPH SSL Q + N + +++ S
Sbjct: 73 HCRHHRPHCEVPPLLPHPSSLCLPHPQVLAPNSTPSLLGSPQFLGFFSRGFAGALGGDQH 132
Query: 125 TNHNLATNILDSNCVNY---------------RNVSSVTDDNQDSDGECDGN-NSESEIT 168
++ ++ D+ V+Y R S V+ DSD E DG+ N ++
Sbjct: 133 SDPEPDGDVGDNGVVDYDGALVNSGADTEEKSRGFSRVSQGETDSDPETDGDENVGGDLD 192
Query: 169 SVSYKSTADPREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPA 228
V+ S ADP E+ RVC+VIDELF+LDRNMEAVLDEC ++LSH LVV VLERF+HAR+PA
Sbjct: 193 EVNVNSGADPEEVSRVCRVIDELFALDRNMEAVLDECNVDLSHALVVGVLERFKHARKPA 252
Query: 229 FRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNA 288
FRFFCWAG K GF HNSRTYN+MMS+LGR RQFE+M+ ML EMGEKGLL+METF IA+ A
Sbjct: 253 FRFFCWAGQKAGFTHNSRTYNAMMSVLGRTRQFESMMGMLGEMGEKGLLTMETFSIAIKA 312
Query: 289 FAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNL 348
FAAAKERKKAV +FELM +Y F AGVDTINCLL+NLGR+KL KEAQ LF+KL+ RFTPNL
Sbjct: 313 FAAAKERKKAVGVFELMKRYNFDAGVDTINCLLDNLGRAKLGKEAQALFEKLEDRFTPNL 372
Query: 349 TTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEV 408
TYTVLL GWCR+KNL+EAGR WNEMIDKGFKPD++AH+ MLEGLLK K+SDAIKLFEV
Sbjct: 373 RTYTVLLNGWCRIKNLVEAGRTWNEMIDKGFKPDIIAHHTMLEGLLKCKKKSDAIKLFEV 432
Query: 409 MKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRR 448
MKAKGPSPNVR+YTI+I CKQ +AAVYTCLITGFGN+++
Sbjct: 433 MKAKGPSPNVRTYTILIRDLCKQMKMKEAVEYFDEMVDSGCQPDAAVYTCLITGFGNQKK 492
Query: 449 MDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNM 508
MD VY LLKEM+E+GCP DG TYNALIKLM ++MPD+AVRIYK+M+++G +PT+HTYNM
Sbjct: 493 MDKVYALLKEMKEKGCPADGRTYNALIKLMTNRQMPDDAVRIYKKMIQNGIQPTLHTYNM 552
Query: 509 IMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
+MKSYF T NYEMG VW EM R+GCCPDDNSY V IGGLI RS EA +YLEEM+EKG
Sbjct: 553 MMKSYFYTRNYEMGCAVWKEMGRKGCCPDDNSYIVFIGGLIRHGRSEEACRYLEEMIEKG 612
Query: 569 MKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARWAETTKNRVYRKDRI 628
MKAP LDYNKFAAD SRAG+ +L+ELA+KM+F GKFEVSNV ARWAE K RV R+D +
Sbjct: 613 MKAPQLDYNKFAADFSRAGKPDILEELARKMKFEGKFEVSNVFARWAEMMKKRVKRRDPV 672
Query: 629 ETD 631
++D
Sbjct: 673 KSD 675
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225447826|ref|XP_002268129.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470, mitochondrial-like [Vitis vinifera] | Back alignment and taxonomy information |
|---|
Score = 731 bits (1886), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 370/603 (61%), Positives = 444/603 (73%), Gaps = 56/603 (9%)
Query: 85 YCSLYRSHCQVPCLLPHSSSL--HSLQKVLLNKSTNVVASSL------------------ 124
+C +R HC+VP LLPH SSL Q + N + +++ S
Sbjct: 73 HCRHHRPHCEVPPLLPHPSSLCLPHPQVLAPNSTPSLLGSPQFLGSFSRGFARALGGDQH 132
Query: 125 TNHNLATNILDSNCVNY---------------RNVSSVTDDNQDSDGECDGN-NSESEIT 168
++ ++ D+ +Y R S V+ DSD E DG+ N +
Sbjct: 133 SDPEPDGDVGDNGVGDYDGALVNSGADTEEKSRGFSRVSQGETDSDPETDGDENVGGDFD 192
Query: 169 SVSYKSTADPREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPA 228
V+ S ADP E+ RVC+VIDELF+LDRNMEAVLDEC ++LSH LVV VLERF+HAR+PA
Sbjct: 193 EVNVNSGADPEEVSRVCRVIDELFALDRNMEAVLDECNVDLSHALVVGVLERFKHARKPA 252
Query: 229 FRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNA 288
FRFFCWAG K GF HNSRTYN+MMS+LGR RQFE+M+ ML EMGEKGLL+METF IA+ A
Sbjct: 253 FRFFCWAGQKAGFTHNSRTYNAMMSVLGRTRQFESMMGMLGEMGEKGLLTMETFSIAIKA 312
Query: 289 FAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNL 348
FAAAKERKKAV +FELM +Y F AGVDTINCLL+NLGR+KL KEAQ LF+KL+ RFTPNL
Sbjct: 313 FAAAKERKKAVGVFELMKRYNFDAGVDTINCLLDNLGRAKLGKEAQALFEKLEDRFTPNL 372
Query: 349 TTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEV 408
TYTVLL GWCR+KNL+EAGR WNEMIDKGFKPD++AH+ MLEGLLK K+SDAIKLFEV
Sbjct: 373 RTYTVLLNGWCRIKNLVEAGRTWNEMIDKGFKPDIIAHHTMLEGLLKCKKKSDAIKLFEV 432
Query: 409 MKAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRR 448
MKAKGPSPNVR+YTI+I CKQ +AAVYTCLITGFGN+++
Sbjct: 433 MKAKGPSPNVRTYTILIRDLCKQMKMQEAVEYFDEMVDSGCQPDAAVYTCLITGFGNQKK 492
Query: 449 MDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNM 508
MD VY LLKEM+E+GCP DG TYNALIKLM ++MPD+AVRIYK+M+++G + T+HTYNM
Sbjct: 493 MDKVYALLKEMKEKGCPADGRTYNALIKLMTNRQMPDDAVRIYKKMIQNGIQSTLHTYNM 552
Query: 509 IMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568
+MKSYF T NYEMG VW+EM R+GCCPDDNSY V IGGLI RS EA +YLEEM+EKG
Sbjct: 553 MMKSYFYTRNYEMGCAVWEEMGRKGCCPDDNSYIVFIGGLIRHGRSEEACRYLEEMIEKG 612
Query: 569 MKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARWAETTKNRVYRKDRI 628
MKAP LDYNKFAAD SRAG+ +L+ELA+KM+F GKFEVSNV ARWAE K RV R+D +
Sbjct: 613 MKAPQLDYNKFAADFSRAGKPDILEELARKMKFEGKFEVSNVFARWAEMMKKRVKRRDPV 672
Query: 629 ETD 631
++D
Sbjct: 673 KSD 675
|
Source: Vitis vinifera Species: Vitis vinifera Genus: Vitis Family: Vitaceae Order: Vitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|449454008|ref|XP_004144748.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470, mitochondrial-like [Cucumis sativus] gi|449490811|ref|XP_004158714.1| PREDICTED: pentatricopeptide repeat-containing protein At3g62470, mitochondrial-like [Cucumis sativus] | Back alignment and taxonomy information |
|---|
Score = 729 bits (1883), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 359/581 (61%), Positives = 435/581 (74%), Gaps = 45/581 (7%)
Query: 72 STLSLSRLLHYSSYCSLYRSHCQVPCLLPHSSSLHSLQKVLLNKSTNVVASSLTNHNLAT 131
S+L L + S+ S + SHCQ+P +LP++SS Q+ LL + S+L
Sbjct: 49 SSLPLFSMFDSPSHRSFHYSHCQIPFILPYASSFSVPQEKLL------IVSTLRT----- 97
Query: 132 NILDSNCVNYRNVSSVTDDNQDSDGECDGNNSESEITSVSYKST------ADPREIERVC 185
+++RN + D + G CD +N +S+ KS D E+ RVC
Sbjct: 98 -------IDFRNPPFPSLDLL-ARGFCDLSNPDSDSEIECEKSEEEDNRECDSTEVNRVC 149
Query: 186 KVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNS 245
KVIDELF+LDRNMEAVLDECG+ LSH+LV++VL RF+ AR+PAFRFFCWA KPGFAH+S
Sbjct: 150 KVIDELFALDRNMEAVLDECGVKLSHDLVLEVLARFKQARKPAFRFFCWAAQKPGFAHDS 209
Query: 246 RTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELM 305
+TYN+MM+ILG+ RQFETMVS+LEEM EK LL+METF + AFAAAKERKKAV + ELM
Sbjct: 210 KTYNTMMTILGKTRQFETMVSLLEEMAEKELLTMETFTVCFKAFAAAKERKKAVGVLELM 269
Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLM 365
KYK+K GV+TINCLL++LGR+KL KEA +F+KL RFTPNL TYTVLL GWCRV+NLM
Sbjct: 270 KKYKYKVGVETINCLLDSLGRAKLGKEALTIFEKLHGRFTPNLQTYTVLLNGWCRVRNLM 329
Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
EAG++WN+MID+ FKPD+VAHN MLEGLL+ KRSDAIKLFEVMKAKGPSP+V+SYTI++
Sbjct: 330 EAGKIWNQMIDEDFKPDIVAHNTMLEGLLRCKKRSDAIKLFEVMKAKGPSPDVKSYTILV 389
Query: 426 WKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465
FCKQ +AA+YTCLITGFGN++RMD VY LLKEM+ GCP
Sbjct: 390 RDFCKQAKMKEAVQYFEEMQGAGCRPDAAIYTCLITGFGNQKRMDTVYGLLKEMKANGCP 449
Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
PDG TYNALIKLM ++MPD+AVRIYK+M+ +G KPT HTY+M+MKSYFQT NYEMG
Sbjct: 450 PDGKTYNALIKLMTNKRMPDDAVRIYKKMIENGIKPTTHTYSMMMKSYFQTRNYEMGVAA 509
Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585
WDEM +GCCPDDNSYTV IGGLIS R EA KYLEEM+EKGMKAP LDYNKFAAD SR
Sbjct: 510 WDEMKLKGCCPDDNSYTVFIGGLISLGRCAEAGKYLEEMIEKGMKAPQLDYNKFAADFSR 569
Query: 586 AGRSYVLDELAQKMRFSGKFEVSNVLARWAETTKNRVYRKD 626
AGR +L+ELAQKM+FSGKFE SNV+ARWAE + RV R++
Sbjct: 570 AGRPDILEELAQKMKFSGKFEASNVIARWAEMMRKRVKRRN 610
|
Source: Cucumis sativus Species: Cucumis sativus Genus: Cucumis Family: Cucurbitaceae Order: Cucurbitales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|356561933|ref|XP_003549231.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing protein At3g62470, mitochondrial-like [Glycine max] | Back alignment and taxonomy information |
|---|
Score = 719 bits (1857), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 341/477 (71%), Positives = 393/477 (82%), Gaps = 20/477 (4%)
Query: 170 VSYKSTADPREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAF 229
VS +S ADP E+ERVCKVIDELF+LDRNME VLDECG+ LSH+LVVDVL+RF+HAR+PAF
Sbjct: 25 VSGESCADPVEVERVCKVIDELFALDRNMEVVLDECGVRLSHDLVVDVLQRFKHARKPAF 84
Query: 230 RFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAF 289
RFFC AG +PGFAH+SRTYN MM +LGR RQFETMV+ LEEMGEKGLL+METF IA+ AF
Sbjct: 85 RFFCXAGKRPGFAHDSRTYNFMMCVLGRTRQFETMVAKLEEMGEKGLLTMETFSIAIKAF 144
Query: 290 AAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLT 349
A AK+RKK V IF+LM KY FK GVD IN LL++L +KL KEAQ +F+KLK RFTP+L
Sbjct: 145 AEAKQRKKEVGIFDLMKKYGFKVGVDVINFLLDSLSTAKLGKEAQAVFEKLKDRFTPSLQ 204
Query: 350 TYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVM 409
TYT+LL GWCR+KNL+EAGRVWNEMID+GF PD+VAHN+MLEGLLK K+SDAIKLFE+M
Sbjct: 205 TYTILLSGWCRLKNLLEAGRVWNEMIDRGFNPDIVAHNVMLEGLLKCKKKSDAIKLFEIM 264
Query: 410 KAKGPSPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRM 449
KAKGPSPNVRSYTIMI FCKQ +AA+YTCLITGFG +++M
Sbjct: 265 KAKGPSPNVRSYTIMIQDFCKQKLMGEAIEYFDVMVDRGCQPDAALYTCLITGFGRQKKM 324
Query: 450 DIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMI 509
D+VY LLKEM ERGCPPDG TYNALIKLM Q MPD+AVRIYK+M++SG KPTIHTYNMI
Sbjct: 325 DMVYSLLKEMRERGCPPDGRTYNALIKLMTSQHMPDDAVRIYKKMIQSGIKPTIHTYNMI 384
Query: 510 MKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM 569
MKSYF T NYEMG ++WDEM +GCCPDDNSY V IGGLI QDRSGEA KYLEEMLEKGM
Sbjct: 385 MKSYFVTKNYEMGHEIWDEMHPKGCCPDDNSYIVYIGGLIRQDRSGEACKYLEEMLEKGM 444
Query: 570 KAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARWAETTKNRVYRKD 626
KA LDYNKFA+D+S+ G + +L+ELA+KM F GKFEVSNVLA WA+ K RK+
Sbjct: 445 KALKLDYNKFASDISKTGNAVILEELARKMNFVGKFEVSNVLASWADMMKKSAKRKE 501
|
Source: Glycine max Species: Glycine max Genus: Glycine Family: Fabaceae Order: Fabales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15228767|ref|NP_191806.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75181319|sp|Q9LZP3.1|PP293_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g62470, mitochondrial; Flags: Precursor gi|7340718|emb|CAB82961.1| putative protein [Arabidopsis thaliana] gi|34365579|gb|AAQ65101.1| At3g62470 [Arabidopsis thaliana] gi|332646835|gb|AEE80356.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 716 bits (1847), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 353/591 (59%), Positives = 440/591 (74%), Gaps = 60/591 (10%)
Query: 59 RVHGDGGAKCSRGSTLSLSRLLHYSSYCSLYRSHCQVPCLLPHSSSLHSLQKVLLNKSTN 118
RV G G + R S SR++H S+Y YR Q+P LPHSS
Sbjct: 41 RVIGGRGEEEVRFSGALFSRMIHSSTYHP-YR---QIP--LPHSS--------------- 79
Query: 119 VVASSLTNHNLATNILDSN--CVNYRNVSSVTDD--NQDSDGECDGNNSESEITSVSYKS 174
+LD++ C + + SS D +++ + ECD N+ E+ ++ V +S
Sbjct: 80 ------------VQLLDASLGCRGFSSGSSNVSDGCDEEVESECD-NDEETGVSCV--ES 124
Query: 175 TADPREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCW 234
+ +P E+ERVCKVIDELF+LDRNMEAVLDE ++LSH+L+V+VLERFRHAR+PAFRFFCW
Sbjct: 125 STNPEEVERVCKVIDELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFCW 184
Query: 235 AGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKE 294
A ++ GFAH+SRTYNSMMSIL + RQFETMVS+LEEMG KGLL+METF IAM AFAAAKE
Sbjct: 185 AAERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAAKE 244
Query: 295 RKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVL 354
RKKAV IFELM KYKFK GV+TINCLL++LGR+KL KEAQ+LFDKLK RFTPN+ TYTVL
Sbjct: 245 RKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVL 304
Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
L GWCRV+NL+EA R+WN+MID+G KPD+VAHN+MLEGLL+ K+SDAIKLF VMK+KGP
Sbjct: 305 LNGWCRVRNLIEAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGP 364
Query: 415 SPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYD 454
PNVRSYTIMI FCKQ +AAVYTCLITGFG ++++D VY+
Sbjct: 365 CPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYE 424
Query: 455 LLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
LLKEM+E+G PPDG TYNALIKLM QKMP+ A RIY +M+++ +P+IHT+NMIMKSYF
Sbjct: 425 LLKEMQEKGHPPDGKTYNALIKLMANQKMPEHATRIYNKMIQNEIEPSIHTFNMIMKSYF 484
Query: 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVL 574
NYEMGR VW+EMI++G CPDDNSYTVLI GLI + +S EA +YLEEML+KGMK P++
Sbjct: 485 MARNYEMGRAVWEEMIKKGICPDDNSYTVLIRGLIGEGKSREACRYLEEMLDKGMKTPLI 544
Query: 575 DYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARWAETTKNRVYRK 625
DYNKFAAD R G+ + +ELAQ+ +FSGKF + + ARWA+ T+ R ++
Sbjct: 545 DYNKFAADFHRGGQPEIFEELAQRAKFSGKFAAAEIFARWAQMTRRRFKQR 595
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15228788|ref|NP_191813.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|122214682|sp|Q3EAF8.1|PP294_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g62540, mitochondrial; Flags: Precursor gi|332646841|gb|AEE80362.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 713 bits (1841), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/587 (60%), Positives = 436/587 (74%), Gaps = 60/587 (10%)
Query: 59 RVHGDGGAKCSRGSTLSLSRLLHYSSYCSLYRSHCQVPCLLPHSSSLHSLQKVLLNKSTN 118
RV G G + R S SR++H S+Y YR Q+P LPHSS
Sbjct: 41 RVIGGRGEEEVRFSGALFSRMIHSSTY-HPYR---QIP--LPHSS--------------- 79
Query: 119 VVASSLTNHNLATNILDSN--CVNYRNVSSVTDD--NQDSDGECDGNNSESEITSVSYKS 174
+LD++ C + + SS D +++ + ECD N+ E+ ++ V +S
Sbjct: 80 ------------VQLLDASLGCRGFSSGSSNVSDGCDEEVESECD-NDEETGVSCV--ES 124
Query: 175 TADPREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCW 234
+ +P E+ERVCKVIDELF+LDRNMEAVLDE ++LSH+L+V+VLERFRHAR+PAFRFFCW
Sbjct: 125 STNPEEVERVCKVIDELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFCW 184
Query: 235 AGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKE 294
A ++ GFAH SRTYNSMMSIL + RQFETMVS+LEEMG KGLL+METF IAM AFAAAKE
Sbjct: 185 AAERQGFAHASRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAAKE 244
Query: 295 RKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVL 354
RKKAV IFELM KYKFK GV+TINCLL++LGR+KL KEAQ+LFDKLK RFTPN+ TYTVL
Sbjct: 245 RKKAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVL 304
Query: 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414
L GWCRV+NL+EA R+WN+MID G KPD+VAHN+MLEGLL+ K+SDAIKLF VMK+KGP
Sbjct: 305 LNGWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGP 364
Query: 415 SPNVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYD 454
PNVRSYTIMI FCKQ +AAVYTCLITGFG ++++D VY+
Sbjct: 365 CPNVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYE 424
Query: 455 LLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
LLKEM+E+G PPDG TYNALIKLM QKMP+ RIY +M+++ +P+IHT+NMIMKSYF
Sbjct: 425 LLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYF 484
Query: 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVL 574
NYEMGR VWDEMI++G CPDDNSYTVLI GLIS+ +S EA +YLEEML+KGMK P++
Sbjct: 485 VARNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKGMKTPLI 544
Query: 575 DYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARWAETTKNR 621
DYNKFAAD R G+ + +ELAQ+ +FSGKF + + ARWA+ T+ R
Sbjct: 545 DYNKFAADFHRGGQPEIFEELAQRAKFSGKFAAAEIFARWAQMTRRR 591
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|15241508|ref|NP_196986.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] gi|75173968|sp|Q9LEQ7.1|PP382_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g14820, mitochondrial; Flags: Precursor gi|9755750|emb|CAC01881.1| putative protein [Arabidopsis thaliana] gi|332004697|gb|AED92080.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana] | Back alignment and taxonomy information |
|---|
Score = 712 bits (1838), Expect = 0.0, Method: Compositional matrix adjust.
Identities = 354/585 (60%), Positives = 436/585 (74%), Gaps = 57/585 (9%)
Query: 59 RVHGDGGAKCSRGSTLSLSRLLHYSSYCSLYRSHCQVPCLLPHSSSLHSLQKVLLNKSTN 118
RV G G + R S SR++H S+Y YR Q+P LPHS L
Sbjct: 41 RVIGGRGEEEVRFSGALFSRMIHSSTY-HPYR---QIP--LPHSVQL------------- 81
Query: 119 VVASSLTNHNLATNILDSNCVNYRNVSSVTDD--NQDSDGECDGNNSESEITSVSYKSTA 176
+ +SL C + + SS D +++ + ECD N+ E+ ++ V +S+
Sbjct: 82 -LDASL------------GCRGFSSGSSNVSDGCDEEVESECD-NDEETGVSCV--ESST 125
Query: 177 DPREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAG 236
+P E+ERVCKVIDELF+LDRNMEAVLDE ++LSH+L+V+VLERFRHAR+PAFRFFCWA
Sbjct: 126 NPEEVERVCKVIDELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWAA 185
Query: 237 DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERK 296
++ GFAH+SRTYNSMMSIL + RQFETMVS+LEEMG KGLL+METF IAM AFAAAKERK
Sbjct: 186 ERQGFAHDSRTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAAKERK 245
Query: 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLG 356
KAV IFELM KYKFK GV+TINCLL++LGR+KL KEAQ+LFDKLK RFTPN+ TYTVLL
Sbjct: 246 KAVGIFELMKKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVLLN 305
Query: 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416
GWCRV+NL+EA R+WN+MID G KPD+VAHN+MLEGLL+ K+SDAIKLF VMK+KGP P
Sbjct: 306 GWCRVRNLIEAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCP 365
Query: 417 NVRSYTIMIWKFCKQ--------------------NAAVYTCLITGFGNRRRMDIVYDLL 456
NVRSYTIMI FCKQ +AAVYTCLITGFG ++++D VY+LL
Sbjct: 366 NVRSYTIMIRDFCKQSSMETAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLDTVYELL 425
Query: 457 KEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516
KEM+E+G PPDG TYNALIKLM QKMP+ RIY +M+++ +P+IHT+NMIMKSYF
Sbjct: 426 KEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIMKSYFVA 485
Query: 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576
NYEMGR VWDEMI++G CPDDNSYTVLI GLIS+ +S EA +YLEEML+KGMK P++DY
Sbjct: 486 RNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKSREACRYLEEMLDKGMKTPLIDY 545
Query: 577 NKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARWAETTKNR 621
NKFAAD R G+ + +ELAQ+ +FSGKF + + ARWA+ T+ R
Sbjct: 546 NKFAADFHRGGQPEIFEELAQRAKFSGKFAAAEIFARWAQMTRRR 590
|
Source: Arabidopsis thaliana Species: Arabidopsis thaliana Genus: Arabidopsis Family: Brassicaceae Order: Brassicales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST
Original result of BLAST against Gene Ontology (AMIGO)
| ID |
Alignment graph |
Length |
Definition |
Q cover |
H cover |
Identity |
E-value |
| Query | 631 | ||||||
| TAIR|locus:2185455 | 598 | AT5G14820 "AT5G14820" [Arabido | 0.698 | 0.737 | 0.507 | 1.8e-112 | |
| TAIR|locus:2096099 | 599 | AT3G62470 "AT3G62470" [Arabido | 0.698 | 0.736 | 0.507 | 1.8e-112 | |
| TAIR|locus:2096074 | 599 | AT3G62540 "AT3G62540" [Arabido | 0.698 | 0.736 | 0.507 | 3.6e-112 | |
| TAIR|locus:2097395 | 638 | AT3G49730 [Arabidopsis thalian | 0.603 | 0.597 | 0.319 | 2.6e-47 | |
| TAIR|locus:2197925 | 505 | AT1G26500 "AT1G26500" [Arabido | 0.673 | 0.841 | 0.288 | 9.1e-45 | |
| TAIR|locus:2026346 | 510 | AT1G71060 [Arabidopsis thalian | 0.553 | 0.684 | 0.292 | 5e-44 | |
| TAIR|locus:2156213 | 637 | AT5G65820 [Arabidopsis thalian | 0.709 | 0.703 | 0.283 | 1.3e-43 | |
| TAIR|locus:2139732 | 566 | AT4G11690 [Arabidopsis thalian | 0.567 | 0.632 | 0.264 | 4.3e-36 | |
| TAIR|locus:2024296 | 598 | AT1G09900 "AT1G09900" [Arabido | 0.534 | 0.563 | 0.296 | 9e-34 | |
| TAIR|locus:2035206 | 523 | AT1G52640 [Arabidopsis thalian | 0.645 | 0.778 | 0.273 | 1.7e-32 |
| TAIR|locus:2185455 AT5G14820 "AT5G14820" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1110 (395.8 bits), Expect = 1.8e-112, P = 1.8e-112
Identities = 236/465 (50%), Positives = 307/465 (66%)
Query: 130 ATNILDSN--CVNYRNVSSVTDDNQDSD--GECDGNNSESEITSVSYKSTADPREIERVC 185
+ +LD++ C + + SS D D + ECD N+ E+ ++ V +S+ +P E+ERVC
Sbjct: 78 SVQLLDASLGCRGFSSGSSNVSDGCDEEVESECD-NDEETGVSCV--ESSTNPEEVERVC 134
Query: 186 KVIDELFSLDRNMEAVLDECGINLSHNLVVDVLEXXXXXXXXXXXXXCWAGDKPGFAHNS 245
KVIDELF+LDRNMEAVLDE ++LSH+L+V+VLE CWA ++ GFAH+S
Sbjct: 135 KVIDELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWAAERQGFAHDS 194
Query: 246 RTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELM 305
RTYNSMMSIL + RQFETMVS+LEEMG KGLL+METF IAM AFAAAKERKKAV IFELM
Sbjct: 195 RTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAAKERKKAVGIFELM 254
Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLM 365
KYKFK GV+TINCLL++LGR+KL KEAQ+LFDKLK RFTPN+ TYTVLL GWCRV+NL+
Sbjct: 255 KKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRVRNLI 314
Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
EA R+WN+MID G KPD+VAHN+MLEGLL+ K+SDAIKLF VMK+KGP PNVRSYTIMI
Sbjct: 315 EAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSYTIMI 374
Query: 426 WKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPD 485
FCKQ++ M+ + +M + G PD Y LI QK D
Sbjct: 375 RDFCKQSS---------------METAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLD 419
Query: 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
+ KEM G P TYN ++K E G +++++MI+ P +++ +++
Sbjct: 420 TVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIM 479
Query: 546 GGLISQDRSGEAYKYL-EEMLEKGMKAPVLDYNKFAADLSRAGRS 589
R+ E + + +EM++KG+ Y L G+S
Sbjct: 480 KSYFVA-RNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKS 523
|
|
| TAIR|locus:2096099 AT3G62470 "AT3G62470" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1110 (395.8 bits), Expect = 1.8e-112, P = 1.8e-112
Identities = 236/465 (50%), Positives = 307/465 (66%)
Query: 130 ATNILDSN--CVNYRNVSSVTDDNQDSD--GECDGNNSESEITSVSYKSTADPREIERVC 185
+ +LD++ C + + SS D D + ECD N+ E+ ++ V +S+ +P E+ERVC
Sbjct: 79 SVQLLDASLGCRGFSSGSSNVSDGCDEEVESECD-NDEETGVSCV--ESSTNPEEVERVC 135
Query: 186 KVIDELFSLDRNMEAVLDECGINLSHNLVVDVLEXXXXXXXXXXXXXCWAGDKPGFAHNS 245
KVIDELF+LDRNMEAVLDE ++LSH+L+V+VLE CWA ++ GFAH+S
Sbjct: 136 KVIDELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWAAERQGFAHDS 195
Query: 246 RTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELM 305
RTYNSMMSIL + RQFETMVS+LEEMG KGLL+METF IAM AFAAAKERKKAV IFELM
Sbjct: 196 RTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAAKERKKAVGIFELM 255
Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLM 365
KYKFK GV+TINCLL++LGR+KL KEAQ+LFDKLK RFTPN+ TYTVLL GWCRV+NL+
Sbjct: 256 KKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRVRNLI 315
Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
EA R+WN+MID+G KPD+VAHN+MLEGLL+ K+SDAIKLF VMK+KGP PNVRSYTIMI
Sbjct: 316 EAARIWNDMIDQGLKPDIVAHNVMLEGLLRSRKKSDAIKLFHVMKSKGPCPNVRSYTIMI 375
Query: 426 WKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPD 485
FCKQ++ M+ + +M + G PD Y LI QK D
Sbjct: 376 RDFCKQSS---------------METAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLD 420
Query: 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
+ KEM G P TYN ++K E +++++MI+ P +++ +++
Sbjct: 421 TVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHATRIYNKMIQNEIEPSIHTFNMIM 480
Query: 546 GGLISQDRSGEAYKYL-EEMLEKGMKAPVLDYNKFAADLSRAGRS 589
R+ E + + EEM++KG+ Y L G+S
Sbjct: 481 KSYFMA-RNYEMGRAVWEEMIKKGICPDDNSYTVLIRGLIGEGKS 524
|
|
| TAIR|locus:2096074 AT3G62540 "AT3G62540" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 1107 (394.7 bits), Expect = 3.6e-112, P = 3.6e-112
Identities = 236/465 (50%), Positives = 306/465 (65%)
Query: 130 ATNILDSN--CVNYRNVSSVTDDNQDSD--GECDGNNSESEITSVSYKSTADPREIERVC 185
+ +LD++ C + + SS D D + ECD N+ E+ ++ V +S+ +P E+ERVC
Sbjct: 79 SVQLLDASLGCRGFSSGSSNVSDGCDEEVESECD-NDEETGVSCV--ESSTNPEEVERVC 135
Query: 186 KVIDELFSLDRNMEAVLDECGINLSHNLVVDVLEXXXXXXXXXXXXXCWAGDKPGFAHNS 245
KVIDELF+LDRNMEAVLDE ++LSH+L+V+VLE CWA ++ GFAH S
Sbjct: 136 KVIDELFALDRNMEAVLDEMKLDLSHDLIVEVLERFRHARKPAFRFFCWAAERQGFAHAS 195
Query: 246 RTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELM 305
RTYNSMMSIL + RQFETMVS+LEEMG KGLL+METF IAM AFAAAKERKKAV IFELM
Sbjct: 196 RTYNSMMSILAKTRQFETMVSVLEEMGTKGLLTMETFTIAMKAFAAAKERKKAVGIFELM 255
Query: 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLM 365
KYKFK GV+TINCLL++LGR+KL KEAQ+LFDKLK RFTPN+ TYTVLL GWCRV+NL+
Sbjct: 256 KKYKFKIGVETINCLLDSLGRAKLGKEAQVLFDKLKERFTPNMMTYTVLLNGWCRVRNLI 315
Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
EA R+WN+MID G KPD+VAHN+MLEGLL+ K+SDAIKLF VMK+KGP PNVRSYTIMI
Sbjct: 316 EAARIWNDMIDHGLKPDIVAHNVMLEGLLRSMKKSDAIKLFHVMKSKGPCPNVRSYTIMI 375
Query: 426 WKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPD 485
FCKQ++ M+ + +M + G PD Y LI QK D
Sbjct: 376 RDFCKQSS---------------METAIEYFDDMVDSGLQPDAAVYTCLITGFGTQKKLD 420
Query: 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
+ KEM G P TYN ++K E G +++++MI+ P +++ +++
Sbjct: 421 TVYELLKEMQEKGHPPDGKTYNALIKLMANQKMPEHGTRIYNKMIQNEIEPSIHTFNMIM 480
Query: 546 GGLISQDRSGEAYKYL-EEMLEKGMKAPVLDYNKFAADLSRAGRS 589
R+ E + + +EM++KG+ Y L G+S
Sbjct: 481 KSYFVA-RNYEMGRAVWDEMIKKGICPDDNSYTVLIRGLISEGKS 524
|
|
| TAIR|locus:2097395 AT3G49730 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 495 (179.3 bits), Expect = 2.6e-47, P = 2.6e-47
Identities = 127/398 (31%), Positives = 194/398 (48%)
Query: 180 EIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLEXXXXXXXXXXXXXCWAGDKP 239
E+E++ +++ S +E L+E GI+L L++ VL WA +P
Sbjct: 66 EVEKIYRILRNHHSRVPKLELALNESGIDLRPGLIIRVLSRCGDAGNLGYRFFLWATKQP 125
Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG--LLSMETFKIAMNAFAAAKERKK 297
G+ H+ SM+ IL + RQF + ++EEM + L+ E F + M FA+A KK
Sbjct: 126 GYFHSYEVCKSMVMILSKMRQFGAVWGLIEEMRKTNPELIEPELFVVLMRRFASANMVKK 185
Query: 298 AVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357
AV + + M KY + CLL+ L ++ KEA +F+ ++ +F PNL +T LL G
Sbjct: 186 AVEVLDEMPKYGLEPDEYVFGCLLDALCKNGSVKEASKVFEDMREKFPPNLRYFTSLLYG 245
Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
WCR LMEA V +M + G +PD+V +L G GK +DA L M+ +G PN
Sbjct: 246 WCREGKLMEAKEVLVQMKEAGLEPDIVVFTNLLSGYAHAGKMADAYDLMNDMRKRGFEPN 305
Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
V YT++I C+ +RMD + EME GC D +TY ALI
Sbjct: 306 VNCYTVLIQALCR--------------TEKRMDEAMRVFVEMERYGCEADIVTYTALISG 351
Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
M D+ + +M + G P+ TY IM ++ + +E ++ ++M RRGC PD
Sbjct: 352 FCKWGMIDKGYSVLDDMRKKGVMPSQVTYMQIMVAHEKKEQFEECLELIEKMKRRGCHPD 411
Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLD 575
Y V+I EA + EM G+ +P +D
Sbjct: 412 LLIYNVVIRLACKLGEVKEAVRLWNEMEANGL-SPGVD 448
|
|
| TAIR|locus:2197925 AT1G26500 "AT1G26500" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 471 (170.9 bits), Expect = 9.1e-45, P = 9.1e-45
Identities = 136/472 (28%), Positives = 230/472 (48%)
Query: 183 RVCKVI-DELFSLDRNMEAVLDECGINLSHNLVVDVLEXXXXXXXXXXXXXCWAGDK-PG 240
RVC ++ + S D + + L L+H + V ++ P
Sbjct: 48 RVCTILYQQQNSPDSRLVSKLSSTKFQLTHEFFLQVCNNFPLSWRPVHRFFLYSQTHHPD 107
Query: 241 FAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVA 300
F H S T N M++I+G +R + + +E+G++GL++ +TF+I + A+A+E KK V
Sbjct: 108 FTHTSTTSNKMLAIIGNSRNMDLFWELAQEIGKRGLVNDKTFRIVLKTLASARELKKCVN 167
Query: 301 IFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCR 360
F LMN + + V+T+N +E L + KL +EA+ +F KLK P+ TY ++ G+C
Sbjct: 168 YFHLMNGFGYLYNVETMNRGVETLCKEKLVEEAKFVFIKLKEFIKPDEITYRTMIQGFCD 227
Query: 361 VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK-GPSPNVR 419
V +L+EA ++WN M+D+GF D+ A ++E LLK + +A K+F VM +K G +
Sbjct: 228 VGDLIEAAKLWNLMMDEGFDVDIEAGKKIMETLLKKNQFDEASKVFYVMVSKRGGDLDGG 287
Query: 420 SYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMK 479
Y +MI CK R+D+ + EM ERG D LT+ +LI +
Sbjct: 288 FYRVMIDWLCKNG---------------RIDMARKVFDEMRERGVYVDNLTWASLIYGLL 332
Query: 480 IQKMPDEA-----------VRIYKEMVRS------------GFKPTIHT-YNMIMKSYFQ 515
+++ EA + IY +++ F+ I IM +Y
Sbjct: 333 VKRRVVEAYGLVEGVENPDISIYHGLIKGLVKIKRASEATEVFRKMIQRGCEPIMHTYLM 392
Query: 516 TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLD 575
+GR+ R+G P N T+ +GG+I + E KY+E L++G++ P D
Sbjct: 393 LLQGHLGRRG-----RKGPDPLVNFDTIFVGGMIKAGKRLETTKYIERTLKRGLEVPRFD 447
Query: 576 YNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARWAETTKNRVYRKDR 627
Y+KF S + +E+A+K+R F+++++ R+ E R R+DR
Sbjct: 448 YSKFLHYYSNEEGVVMFEEMAKKLREVSLFDLADIFQRYGEKMTTRERRRDR 499
|
|
| TAIR|locus:2026346 AT1G71060 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 464 (168.4 bits), Expect = 5.0e-44, P = 5.0e-44
Identities = 108/369 (29%), Positives = 193/369 (52%)
Query: 162 NSESEITSVSYKSTADPREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLEXX 221
++ S T VS + ++ ER+CK++ + F+ D +E +L+E + LS L+ +VL+
Sbjct: 49 HASSVETQVSANDAS--QDAERICKILTK-FT-DSKVETLLNEASVKLSPALIEEVLKKL 104
Query: 222 XXXXXXXXXXXCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMET 281
WA ++ GF H + YN+++ LG+ +QF+ + S++++M K LLS ET
Sbjct: 105 SNAGVLALSVFKWAENQKGFKHTTSNYNALIESLGKIKQFKLIWSLVDDMKAKKLLSKET 164
Query: 282 FKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK 341
F + +A A++ K+A+ F M ++ FK N +L+ L +S+ +AQ +FDK+K
Sbjct: 165 FALISRRYARARKVKEAIGAFHKMEEFGFKMESSDFNRMLDTLSKSRNVGDAQKVFDKMK 224
Query: 342 H-RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRS 400
RF P++ +YT+LL GW + NL+ V EM D+GF+PDVVA+ I++ K K
Sbjct: 225 KKRFEPDIKSYTILLEGWGQELNLLRVDEVNREMKDEGFEPDVVAYGIIINAHCKAKKYE 284
Query: 401 DAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEME 460
+AI+ F M+ + CK + ++ LI G G+ ++++ + + +
Sbjct: 285 EAIRFFNEMEQRN---------------CKPSPHIFCSLINGLGSEKKLNDALEFFERSK 329
Query: 461 ERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE 520
G P + TYNAL+ + ++A + EM G P TY++I+ + +
Sbjct: 330 SSGFPLEAPTYNALVGAYCWSQRMEDAYKTVDEMRLKGVGPNARTYDIILHHLIRMQRSK 389
Query: 521 MGRKVWDEM 529
+V+ M
Sbjct: 390 EAYEVYQTM 398
|
|
| TAIR|locus:2156213 AT5G65820 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 460 (167.0 bits), Expect = 1.3e-43, P = 1.3e-43
Identities = 134/473 (28%), Positives = 219/473 (46%)
Query: 143 NVSSVTDDN-QDSDG---ECDGNNSESEITSVSYKSTADPREIERVCKVIDELFSLDRNM 198
+VS +DN + S+G C + + Y A ++E+ +++ + S +
Sbjct: 43 HVSRALEDNFRRSNGIGLVCLEKSHNDRTKNSKYDEFAS--DVEKSYRILRKFHSRVPKL 100
Query: 199 EAVLDECGINLSHNLVVDVLEXXXXXXXXXXXXXCWAGDKPGFAHNSRTYNSMMSILGRA 258
E L+E G+ L L+ VL WA +P + H+ Y SM+ IL +
Sbjct: 101 ELALNESGVELRPGLIERVLNRCGDAGNLGYRFFVWAAKQPRYCHSIEVYKSMVKILSKM 160
Query: 259 RQFETMVSMLEEMGEKG--LLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDT 316
RQF + ++EEM ++ L+ E F + + FA+A KKA+ + + M K+ F+
Sbjct: 161 RQFGAVWGLIEEMRKENPQLIEPELFVVLVQRFASADMVKKAIEVLDEMPKFGFEPDEYV 220
Query: 317 INCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMID 376
CLL+ L + K+A LF+ ++ RF NL +T LL GWCRV +MEA V +M +
Sbjct: 221 FGCLLDALCKHGSVKDAAKLFEDMRMRFPVNLRYFTSLLYGWCRVGKMMEAKYVLVQMNE 280
Query: 377 KGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVY 436
GF+PD+V + +L G GK +DA L M+ +G PN YT++I CK +
Sbjct: 281 AGFEPDIVDYTNLLSGYANAGKMADAYDLLRDMRRRGFEPNANCYTVLIQALCKVD---- 336
Query: 437 TCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMV 495
RM+ + EME C D +TY AL+ K K+ D+ + +M+
Sbjct: 337 -----------RMEEAMKVFVEMERYECEADVVTYTALVSGFCKWGKI-DKCYIVLDDMI 384
Query: 496 RSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSG 555
+ G P+ TY IM ++ + ++E ++ ++M + PD Y V+I
Sbjct: 385 KKGLMPSELTYMHIMVAHEKKESFEECLELMEKMRQIEYHPDIGIYNVVIRLACKLGEVK 444
Query: 556 EAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVS 608
EA + EM E G+ V + L+ G + ++M G F VS
Sbjct: 445 EAVRLWNEMEENGLSPGVDTFVIMINGLASQGCLLEASDHFKEMVTRGLFSVS 497
|
|
| TAIR|locus:2139732 AT4G11690 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 402 (146.6 bits), Expect = 4.3e-36, P = 4.3e-36
Identities = 99/375 (26%), Positives = 185/375 (49%)
Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKA 298
GF+ N Y +++ + + E + EMG+ GL++ E T+ + +N +K+
Sbjct: 193 GFSPNVVIYTTLIDGCCKKGEIEKAKDLFFEMGKLGLVANERTYTVLINGLFKNGVKKQG 252
Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGG 357
++E M + + T NC++ L + K+A +FD+++ R + N+ TY L+GG
Sbjct: 253 FEMYEKMQEDGVFPNLYTYNCVMNQLCKDGRTKDAFQVFDEMRERGVSCNIVTYNTLIGG 312
Query: 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417
CR L EA +V ++M G P+++ +N +++G +GK A+ L +K++G SP+
Sbjct: 313 LCREMKLNEANKVVDQMKSDGINPNLITYNTLIDGFCGVGKLGKALSLCRDLKSRGLSPS 372
Query: 418 VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477
+ +Y I++ FC++ +G ++KEMEERG P +TY LI
Sbjct: 373 LVTYNILVSGFCRKGDT------SGAAK---------MVKEMEERGIKPSKVTYTILIDT 417
Query: 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537
++A+++ M G P +HTY++++ + G +++ M+ + C P+
Sbjct: 418 FARSDNMEKAIQLRLSMEELGLVPDVHTYSVLIHGFCIKGQMNEASRLFKSMVEKNCEPN 477
Query: 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQ 597
+ Y +I G + S A K L+EM EK + V Y L + +S + L +
Sbjct: 478 EVIYNTMILGYCKEGSSYRALKLLKEMEEKELAPNVASYRYMIEVLCKERKSKEAERLVE 537
Query: 598 KMRFSGKFEVSNVLA 612
KM SG +++L+
Sbjct: 538 KMIDSGIDPSTSILS 552
|
|
| TAIR|locus:2024296 AT1G09900 "AT1G09900" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 387 (141.3 bits), Expect = 9.0e-34, P = 9.0e-34
Identities = 107/361 (29%), Positives = 181/361 (50%)
Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMN 306
TYN M+S +A + +S+L+ M + T+ + + + + K+A+ + + M
Sbjct: 174 TYNVMISGYCKAGEINNALSVLDRMSVSP--DVVTYNTILRSLCDSGKLKQAMEVLDRML 231
Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLM 365
+ V T L+E R A L D+++ R TP++ TY VL+ G C+ L
Sbjct: 232 QRDCYPDVITYTILIEATCRDSGVGHAMKLLDEMRDRGCTPDVVTYNVLVNGICKEGRLD 291
Query: 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425
EA + N+M G +P+V+ HNI+L + G+ DA KL M KG SP+V ++ I+I
Sbjct: 292 EAIKFLNDMPSSGCQPNVITHNIILRSMCSTGRWMDAEKLLADMLRKGFSPSVVTFNILI 351
Query: 426 WKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPD 485
C++ + G R +DI L++M + GC P+ L+YN L+ +K D
Sbjct: 352 NFLCRKG-------LLG----RAIDI----LEKMPQHGCQPNSLSYNPLLHGFCKEKKMD 396
Query: 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545
A+ + MV G P I TYN ++ + + G E ++ +++ +GC P +Y +I
Sbjct: 397 RAIEYLERMVSRGCYPDIVTYNTMLTALCKDGKVEDAVEILNQLSSKGCSPVLITYNTVI 456
Query: 546 GGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKF 605
GL ++G+A K L+EM K +K + Y+ LSR G+ +DE ++F +F
Sbjct: 457 DGLAKAGKTGKAIKLLDEMRAKDLKPDTITYSSLVGGLSREGK---VDEA---IKFFHEF 510
Query: 606 E 606
E
Sbjct: 511 E 511
|
|
| TAIR|locus:2035206 AT1G52640 [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
|---|
Score = 371 (135.7 bits), Expect = 1.7e-32, P = 1.7e-32
Identities = 117/428 (27%), Positives = 191/428 (44%)
Query: 163 SES-EITSVSYKSTADPREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLEXX 221
S+S I S P + + +V+ + + ++E L +S NLV VL+
Sbjct: 19 SQSFRIFSTLLHDPPSPDLVNEISRVLSDHRNPKDDLEHTLVAYSPRVSSNLVEQVLKRC 78
Query: 222 XXXXXXXXXXXCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL--LSM 279
WA P FAH+ +Y+ ++ ILG ++QF + L E E +S
Sbjct: 79 KNLGFPAHRFFLWARRIPDFAHSLESYHILVEILGSSKQFALLWDFLIEAREYNYFEISS 138
Query: 280 ETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK 339
+ F I A++ A +A F M ++ K VD ++ LL +L K AQ F K
Sbjct: 139 KVFWIVFRAYSRANLPSEACRAFNRMVEFGIKPCVDDLDQLLHSLCDKKHVNHAQEFFGK 198
Query: 340 LK-HRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGK 398
K P+ TY++L+ GW R+++ A +V++EM+++ D++A+N +L+ L K G
Sbjct: 199 AKGFGIVPSAKTYSILVRGWARIRDASGARKVFDEMLERNCVVDLLAYNALLDALCKSGD 258
Query: 399 RSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKE 458
K+F+ M G P+ S+ I I +C V++ Y +L
Sbjct: 259 VDGGYKMFQEMGNLGLKPDAYSFAIFIHAYCDAGD-VHSA--------------YKVLDR 303
Query: 459 MEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517
M+ P+ T+N +IK L K +K+ D+A + EM++ G P TYN IM +
Sbjct: 304 MKRYDLVPNVYTFNHIIKTLCKNEKV-DDAYLLLDEMIQKGANPDTWTYNSIMAYHCDHC 362
Query: 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577
K+ M R C PD ++Y +++ LI R A + E M E+ V Y
Sbjct: 363 EVNRATKLLSRMDRTKCLPDRHTYNMVLKLLIRIGRFDRATEIWEGMSERKFYPTVATYT 422
Query: 578 KFAADLSR 585
L R
Sbjct: 423 VMIHGLVR 430
|
|
Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Annotation Transfer from SWISS-PROT Entries
Original result of BLAST against SWISS-PROT
| ID | Name | Annotated EC number | Identity | Query coverage | Hit coverage | RBH(Q2H) | RBH(H2Q) |
| Q9LEQ7 | PP382_ARATH | No assigned EC number | 0.6051 | 0.8367 | 0.8829 | yes | no |
| Q3EAF8 | PP294_ARATH | No assigned EC number | 0.6030 | 0.8351 | 0.8797 | yes | no |
| Q9LZP3 | PP293_ARATH | No assigned EC number | 0.5972 | 0.8415 | 0.8864 | yes | no |
EC Number Prediction by Ezypred Server
Original result from Ezypred Server
Fail to connect to Ezypred Server
EC Number Prediction by EFICAz Software
No EC number assignment, probably not an enzyme!
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database part I
| ID | Alignment Graph | Length |
Definition |
E-value |
| Query | 631 | |||
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-21 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 6e-14 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 4e-13 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-11 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 2e-11 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-10 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 3e-10 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-08 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 5e-08 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 3e-07 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 3e-07 | |
| PLN03081 | 697 | PLN03081, PLN03081, pentatricopeptide (PPR) repeat | 4e-07 | |
| PLN03218 | 1060 | PLN03218, PLN03218, maturation of RBCL 1; Provisio | 5e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 5e-05 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 9e-05 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 1e-04 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 1e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 2e-04 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 2e-04 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 2e-04 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 3e-04 | |
| PLN03077 | 857 | PLN03077, PLN03077, Protein ECB2; Provisional | 5e-04 | |
| TIGR00756 | 35 | TIGR00756, PPR, pentatricopeptide repeat domain (P | 0.001 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.001 | |
| pfam12854 | 34 | pfam12854, PPR_1, PPR repeat | 0.002 | |
| pfam01535 | 31 | pfam01535, PPR, PPR repeat | 0.002 | |
| pfam06239 | 229 | pfam06239, ECSIT, Evolutionarily conserved signall | 0.002 | |
| pfam13041 | 50 | pfam13041, PPR_2, PPR repeat family | 0.003 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 99.2 bits (247), Expect = 2e-21
Identities = 85/381 (22%), Positives = 153/381 (40%), Gaps = 62/381 (16%)
Query: 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFEL 304
YN ++ R + + + +LE+M ++GLL M+ KI F A ++++AV
Sbjct: 374 IDAYNRLL----RDGRIKDCIDLLEDMEKRGLLDMD--KIYHAKFFKACKKQRAV----- 422
Query: 305 MNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNL 364
KEA F KL P L+T+ +L+ +++
Sbjct: 423 --------------------------KEA-FRFAKLIR--NPTLSTFNMLMSVCASSQDI 453
Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRS---- 420
A RV + + G K D + ++ K GK ++F M G NV +
Sbjct: 454 DGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGAL 513
Query: 421 ----------------YTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464
Y IM K K + V+ LI+ G +D +D+L EM+
Sbjct: 514 IDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETH 573
Query: 465 P--PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMG 522
P PD +T AL+K D A +Y+ + K T Y + + S Q G+++
Sbjct: 574 PIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFA 633
Query: 523 RKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAAD 582
++D+M ++G PD+ ++ L+ +A++ L++ ++G+K + Y+
Sbjct: 634 LSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGA 693
Query: 583 LSRAGRSYVLDELAQKMRFSG 603
S A EL + ++
Sbjct: 694 CSNAKNWKKALELYEDIKSIK 714
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 65.9 bits (162), Expect = 6e-14
Identities = 24/50 (48%), Positives = 34/50 (68%)
Query: 381 PDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK 430
PDVV +N +++G K GK +A+KLF MK +G PNV +Y+I+I CK
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 63.6 bits (156), Expect = 4e-13
Identities = 18/48 (37%), Positives = 30/48 (62%)
Query: 501 PTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGL 548
P + TYN ++ Y + G E K+++EM +RG P+ +Y++LI GL
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 59.3 bits (145), Expect = 1e-11
Identities = 19/50 (38%), Positives = 35/50 (70%)
Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLK 395
P++ TY L+ G+C+ + EA +++NEM +G KP+V ++I+++GL K
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 66.8 bits (163), Expect = 2e-11
Identities = 68/341 (19%), Positives = 142/341 (41%), Gaps = 31/341 (9%)
Query: 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKA 298
G + + Y +++S ++ + + M + EM G+ ++ TF ++ A A + KA
Sbjct: 467 GLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKA 526
Query: 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL------KHRFTPNLTTYT 352
+ +M K N L+ G+S A FD L H P+ T
Sbjct: 527 FGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRA---FDVLAEMKAETHPIDPDHITVG 583
Query: 353 VLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412
L+ + A V+ + + K + I + + G A+ +++ MK K
Sbjct: 584 ALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKK 643
Query: 413 GPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYN 472
G P+ ++ L+ G+ +D +++L++ ++G ++Y+
Sbjct: 644 GVKPD---------------EVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYS 688
Query: 473 ALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532
+L+ K +A+ +Y+++ +PT+ T N ++ + + +V EM R
Sbjct: 689 SLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRL 748
Query: 533 GCCPDDNSYTVLIGGLISQDRSGEA---YKYLEEMLEKGMK 570
G CP+ +Y++L L++ +R +A L + E G+K
Sbjct: 749 GLCPNTITYSIL---LVASERKDDADVGLDLLSQAKEDGIK 786
|
Length = 1060 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 56.3 bits (137), Expect = 1e-10
Identities = 16/48 (33%), Positives = 30/48 (62%)
Query: 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSY 513
PD +TYN LI + +EA++++ EM + G KP ++TY++++
Sbjct: 1 PDVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGL 48
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 55.5 bits (135), Expect = 3e-10
Identities = 14/45 (31%), Positives = 24/45 (53%)
Query: 432 NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476
+ Y LI G+ + +++ L EM++RG P+ TY+ LI
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILID 46
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 56.4 bits (136), Expect = 3e-08
Identities = 36/121 (29%), Positives = 56/121 (46%), Gaps = 10/121 (8%)
Query: 456 LKEMEERGCP--PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSY 513
L E+ E GCP TY+AL++ K +Y + SGF+P + N ++ +
Sbjct: 109 LFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNRVLLMH 168
Query: 514 FQTGNYEMGRKVWDEMIRRGCCPDDN--SYTVLIGGLISQDRSGEAYKYLEEMLEKGMKA 571
+ G R+++DEM P+ N S+ +IGGL+ EA+ EM E G A
Sbjct: 169 VKCGMLIDARRLFDEM------PERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDA 222
Query: 572 P 572
Sbjct: 223 E 223
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 55.6 bits (134), Expect = 5e-08
Identities = 68/356 (19%), Positives = 143/356 (40%), Gaps = 56/356 (15%)
Query: 288 AFAAAKERKKAVAIFELMN-KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FT 345
A ++A+ +FE++ F T + L+E K + + ++ ++ F
Sbjct: 96 KLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFE 155
Query: 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405
P+ +L + L++A R+++EM ++ ++ + ++ GL+ G +A L
Sbjct: 156 PDQYMMNRVLLMHVKCGMLIDARRLFDEMPER----NLASWGTIIGGLVDAGNYREAFAL 211
Query: 406 FEVMKAKGPSPNVRSYTIMIWKFCKQNAA-----VYTC-LITGFGNRRRMDI----VYDL 455
F M G R++ +M+ +A ++ C L TG + +Y
Sbjct: 212 FREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSK 271
Query: 456 LKEMEERGCPPDGL------TYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMI 509
++E+ C DG+ +N+++ + +EA+ +Y EM SG T++++
Sbjct: 272 CGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIM 331
Query: 510 MKSYFQTGNYEMGRKVWDEMIRRGC-----------------------------CPDDN- 539
++ + + E ++ +IR G P N
Sbjct: 332 IRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNL 391
Query: 540 -SYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDE 594
S+ LI G + R +A + E M+ +G+ AP ++ F A LS S + ++
Sbjct: 392 ISWNALIAGYGNHGRGTKAVEMFERMIAEGV-AP--NHVTFLAVLSACRYSGLSEQ 444
|
Length = 697 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 53.3 bits (128), Expect = 3e-07
Identities = 59/254 (23%), Positives = 108/254 (42%), Gaps = 55/254 (21%)
Query: 350 TYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVM 409
T+++++ + R+ L A + +I GF D+VA+ +++ K G+ DA +F+ M
Sbjct: 327 TFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRM 386
Query: 410 KAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGL 469
P N+ S+ NA LI G+GN R ++ + M G P+ +
Sbjct: 387 ----PRKNLISW----------NA-----LIAGYGNHGRGTKAVEMFERMIAEGVAPNHV 427
Query: 470 TYNALIKLMKIQKMPDEAVRIYKEMVRS-GFKP-TIH----------------TYNMIMK 511
T+ A++ + + ++ I++ M + KP +H Y MI +
Sbjct: 428 TFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRR 487
Query: 512 SYFQT---------------GNYEMGRKVWDEMIRRGCCPDD-NSYTVLIGGLISQDRSG 555
+ F+ N E+GR +++ G P+ N+Y VL+ S R
Sbjct: 488 APFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMG--PEKLNNYVVLLNLYNSSGRQA 545
Query: 556 EAYKYLEEMLEKGM 569
EA K +E + KG+
Sbjct: 546 EAAKVVETLKRKGL 559
|
Length = 697 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 46.7 bits (112), Expect = 3e-07
Identities = 11/35 (31%), Positives = 17/35 (48%)
Query: 504 HTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD 538
TYN ++ + G E +++ EM RG PD
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215563 PLN03081, PLN03081, pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Score = 53.0 bits (127), Expect = 4e-07
Identities = 53/252 (21%), Positives = 99/252 (39%), Gaps = 25/252 (9%)
Query: 321 LENLGRSKLPKEAQLLFDKLKHR--FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKG 378
+E L +EA LF+ L+ FT +TY L+ +K++ V+ + G
Sbjct: 94 IEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG 153
Query: 379 FKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTC 438
F+PD N +L +K G DA +LF+ M P N+ S+ +
Sbjct: 154 FEPDQYMMNRVLLMHVKCGMLIDARRLFDEM----PERNLASWGTI-------------- 195
Query: 439 LITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSG 498
I G + + L +EM E G + T+ +++ +++ ++++G
Sbjct: 196 -IGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTG 254
Query: 499 FKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAY 558
++ Y + G+ E R V+D M + ++ ++ G S EA
Sbjct: 255 VVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTV----AWNSMLAGYALHGYSEEAL 310
Query: 559 KYLEEMLEKGMK 570
EM + G+
Sbjct: 311 CLYYEMRDSGVS 322
|
Length = 697 |
| >gnl|CDD|215636 PLN03218, PLN03218, maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Score = 46.4 bits (110), Expect = 5e-05
Identities = 56/286 (19%), Positives = 113/286 (39%), Gaps = 44/286 (15%)
Query: 247 TYNSMMSILGRARQFE---TMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFE 303
T ++M A Q + + M+ E KG + E + IA+N+ + + A++I++
Sbjct: 581 TVGALMKACANAGQVDRAKEVYQMIHEYNIKG--TPEVYTIAVNSCSQKGDWDFALSIYD 638
Query: 304 LMNKYKFKAGVDTINCLLENLGRSKLPKEA-QLLFDKLKHRFTPNLTTYTVLLGGWCRVK 362
M K K + L++ G + +A ++L D K +Y+ L+G K
Sbjct: 639 DMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAK 698
Query: 363 NLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYT 422
N +A ++ ++ +P V N ++ L + + A+++ MK G PN +Y+
Sbjct: 699 NWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYS 758
Query: 423 IMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQ- 481
I++ ++ D+ DLL + +E G P+ + + L +
Sbjct: 759 ILL-VASERKD--------------DADVGLDLLSQAKEDGIKPNLVMCRCITGLCLRRF 803
Query: 482 ----------------------KMPDEAVRIYKEMVRSGFKPTIHT 505
K A+ +Y+E + +G PT+
Sbjct: 804 EKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEV 849
|
Length = 1060 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 40.1 bits (95), Expect = 5e-05
Identities = 12/34 (35%), Positives = 19/34 (55%)
Query: 470 TYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTI 503
TYN LI + +EA+ ++KEM G +P +
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 39.8 bits (94), Expect = 9e-05
Identities = 13/34 (38%), Positives = 21/34 (61%)
Query: 350 TYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDV 383
TY L+ G C+ + EA ++ EM ++G +PDV
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPDV 35
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 39.7 bits (94), Expect = 1e-04
Identities = 16/46 (34%), Positives = 28/46 (60%), Gaps = 1/46 (2%)
Query: 316 TINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCR 360
T N L++ + +EA LF+++K R PN+ TY++L+ G C+
Sbjct: 5 TYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLCK 50
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 1e-04
Identities = 55/242 (22%), Positives = 91/242 (37%), Gaps = 29/242 (11%)
Query: 328 KLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAG-RVWNEMIDKGFKPDVVAH 386
+L + +LL + R + Y L C K +E G RV + + V
Sbjct: 66 QLEQALKLLESMQELRVPVDEDAYVALFR-LCEWKRAVEEGSRVCSRALSSHPSLGVRLG 124
Query: 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNR 446
N ML ++ G+ A +F K P ++ S+ +++ + K G+
Sbjct: 125 NAMLSMFVRFGELVHAWYVF----GKMPERDLFSWNVLVGGYAKA----------GY--- 167
Query: 447 RRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAV--RIYKEMVRSGFKPTIH 504
D L M G PD T+ + L +PD A ++ +VR GF+ +
Sbjct: 168 --FDEALCLYHRMLWAGVRPDVYTFPCV--LRTCGGIPDLARGREVHAHVVRFGFELDVD 223
Query: 505 TYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564
N ++ Y + G+ R V+D M RR C S+ +I G E + M
Sbjct: 224 VVNALITMYVKCGDVVSARLVFDRMPRRDCI----SWNAMISGYFENGECLEGLELFFTM 279
Query: 565 LE 566
E
Sbjct: 280 RE 281
|
Length = 857 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 38.6 bits (91), Expect = 2e-04
Identities = 14/33 (42%), Positives = 18/33 (54%)
Query: 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPD 467
Y LI G R++ +L KEM+ERG PD
Sbjct: 2 TYNTLIDGLCKAGRVEEALELFKEMKERGIEPD 34
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 44.5 bits (105), Expect = 2e-04
Identities = 82/378 (21%), Positives = 144/378 (38%), Gaps = 58/378 (15%)
Query: 238 KPGFAHNSRTYNS---MMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKE 294
K GFA + NS M LG + E + S M K +S ++ +
Sbjct: 316 KTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFS---RMETKDAVSWTAM---ISGYEKNGL 369
Query: 295 RKKAVAIFELMNKYKFKAGVDTINCLLE---NLGR----SKLPKEAQLLFDKLKHRFTPN 347
KA+ + LM + TI +L LG KL + A+ +
Sbjct: 370 PDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAE------RKGLISY 423
Query: 348 LTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRS-DAIKLF 406
+ L+ + + K + +A V++ + +K DV++ ++ GL ++ R +A+ F
Sbjct: 424 VVVANALIEMYSKCKCIDKALEVFHNIPEK----DVISWTSIIAGL-RLNNRCFEALIFF 478
Query: 407 EVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPP 466
M PN + AA+ C G +I +L+ G
Sbjct: 479 RQMLLT-LKPNSVTLI----------AALSACARIG-ALMCGKEIHAHVLRT----GIGF 522
Query: 467 DGLTYNALIKL-MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525
DG NAL+ L ++ +M Y + + + ++N+++ Y G M ++
Sbjct: 523 DGFLPNALLDLYVRCGRMN------YAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVEL 576
Query: 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSG---EAYKYLEEMLEKGMKAPVLDYNKFAAD 582
++ M+ G PD+ ++ L L + RSG + +Y M EK P L + D
Sbjct: 577 FNRMVESGVNPDEVTFISL---LCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVD 633
Query: 583 -LSRAGRSYVLDELAQKM 599
L RAG+ KM
Sbjct: 634 LLGRAGKLTEAYNFINKM 651
|
Length = 857 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 38.9 bits (92), Expect = 2e-04
Identities = 14/34 (41%), Positives = 25/34 (73%)
Query: 377 KGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMK 410
KG KPDVV +N +++GL + G+ +A++L + M+
Sbjct: 1 KGLKPDVVTYNTLIDGLCRAGRVDEAVELLDEME 34
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 38.2 bits (90), Expect = 3e-04
Identities = 9/30 (30%), Positives = 16/30 (53%)
Query: 505 TYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534
TYN ++ Y + G E +++ EM +G
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|215561 PLN03077, PLN03077, Protein ECB2; Provisional | Back alignment and domain information |
|---|
Score = 42.9 bits (101), Expect = 5e-04
Identities = 56/291 (19%), Positives = 110/291 (37%), Gaps = 55/291 (18%)
Query: 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR----------------------- 343
++ F+ VD +N L+ + A+L+FD++ R
Sbjct: 215 RFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLE 274
Query: 344 --FT-------PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLL 394
FT P+L T T ++ + + + ++ GF DV N +++ L
Sbjct: 275 LFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYL 334
Query: 395 KIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYD 454
+G +A K+F M+ K + W T +I+G+ D +
Sbjct: 335 SLGSWGEAEKVFSRMETK---------DAVSW----------TAMISGYEKNGLPDKALE 375
Query: 455 LLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514
ME+ PD +T +++ D V++++ R G + N +++ Y
Sbjct: 376 TYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYS 435
Query: 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEML 565
+ + +V+ + + D S+T +I GL +R EA + +ML
Sbjct: 436 KCKCIDKALEVFHNIPEK----DVISWTSIIAGLRLNNRCFEALIFFRQML 482
|
Length = 857 |
| >gnl|CDD|213555 TIGR00756, PPR, pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Score = 36.7 bits (86), Expect = 0.001
Identities = 10/31 (32%), Positives = 20/31 (64%)
Query: 246 RTYNSMMSILGRARQFETMVSMLEEMGEKGL 276
TYN+++ L +A + E + + +EM E+G+
Sbjct: 1 VTYNTLIDGLCKAGRVEEALELFKEMKERGI 31
|
This model describes a domain called the PPR motif, or pentatricopeptide repeat. Its consensus sequence is 35 positions long and typically is found in four or more tandem copies. This family is strongly represented in plant proteins, particularly those sorted to chloroplasts or mitochondria. The pfam model pfam01535, domain of unknown function DUF17, consists of 6 copies of this repeat. This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. Length = 35 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 36.3 bits (85), Expect = 0.001
Identities = 12/30 (40%), Positives = 20/30 (66%)
Query: 247 TYNSMMSILGRARQFETMVSMLEEMGEKGL 276
TYNS++S +A + E + + +EM EKG+
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|205109 pfam12854, PPR_1, PPR repeat | Back alignment and domain information |
|---|
Score = 35.4 bits (83), Expect = 0.002
Identities = 11/31 (35%), Positives = 17/31 (54%)
Query: 344 FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEM 374
P++ TY L+ G CR + EA + +EM
Sbjct: 3 LKPDVVTYNTLIDGLCRAGRVDEAVELLDEM 33
|
This family matches additional variants of the PPR repeat that were not captured by the model for pfam01535. The exact function is not known. Length = 34 |
| >gnl|CDD|144943 pfam01535, PPR, PPR repeat | Back alignment and domain information |
|---|
Score = 35.5 bits (83), Expect = 0.002
Identities = 11/30 (36%), Positives = 16/30 (53%)
Query: 470 TYNALIKLMKIQKMPDEAVRIYKEMVRSGF 499
TYN+LI +EA+ ++KEM G
Sbjct: 2 TYNSLISGYCKAGKLEEALELFKEMKEKGV 31
|
This repeat has no known function. It is about 35 amino acids long and found in up to 18 copies in some proteins. This family appears to be greatly expanded in plants. This repeat occurs in PET309, which may be involved in RNA stabilisation. This domain occurs in crp1 that is involved in RNA processing. This repeat is associated with a predicted plant protein that has a domain organisation similar to the human BRCA1 protein. The repeat has been called PPR. Length = 31 |
| >gnl|CDD|148068 pfam06239, ECSIT, Evolutionarily conserved signalling intermediate in Toll pathway | Back alignment and domain information |
|---|
Score = 39.7 bits (93), Expect = 0.002
Identities = 25/99 (25%), Positives = 40/99 (40%), Gaps = 20/99 (20%)
Query: 446 RRR--MDIVYDLLKEMEERGCPPDGLTYNALIKLMK---------IQKM-------PDEA 487
RRR ++ +Y LK+MEE G D YNAL+ + Q A
Sbjct: 64 RRRGHVEFIYAALKKMEEYGVEKDLEVYNALLDVFPKGVFIPRNIFQAEFMHYPRQQQCA 123
Query: 488 VRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW 526
+ + ++M G P T +++ F ++ M RK
Sbjct: 124 IDVLEQMENHGVMPDKETEFLLVN-IFGKKSHPM-RKYR 160
|
Activation of NF-kappaB as a consequence of signaling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signaling pathways between TRAF-6 and MEKK-1. Length = 229 |
| >gnl|CDD|205222 pfam13041, PPR_2, PPR repeat family | Back alignment and domain information |
|---|
Score = 35.8 bits (84), Expect = 0.003
Identities = 9/48 (18%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Query: 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL-SMETFKIAMNAFA 290
+ TYN+++ + + E + + EM ++G+ ++ T+ I ++
Sbjct: 2 DVVTYNTLIDGYCKKGKVEEALKLFNEMKKRGIKPNVYTYSILIDGLC 49
|
This repeat has no known function. It is about 35 amino acids long and is found in up to 18 copies in some proteins. The family appears to be greatly expanded in plants and fungi. The repeat has been called PPR. Length = 50 |
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 631 | |||
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03218 | 1060 | maturation of RBCL 1; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03077 | 857 | Protein ECB2; Provisional | 100.0 | |
| PLN03081 | 697 | pentatricopeptide (PPR) repeat-containing protein; | 100.0 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.91 | |
| TIGR02917 | 899 | PEP_TPR_lipo putative PEP-CTERM system TPR-repeat | 99.9 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.88 | |
| PRK11788 | 389 | tetratricopeptide repeat protein; Provisional | 99.86 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.8 | |
| PRK15174 | 656 | Vi polysaccharide export protein VexE; Provisional | 99.8 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.75 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.75 | |
| PRK11447 | 1157 | cellulose synthase subunit BcsC; Provisional | 99.74 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.74 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.72 | |
| TIGR00990 | 615 | 3a0801s09 mitochondrial precursor proteins import | 99.71 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.7 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.68 | |
| PRK10049 | 765 | pgaA outer membrane protein PgaA; Provisional | 99.68 | |
| KOG4422 | 625 | consensus Uncharacterized conserved protein [Funct | 99.67 | |
| KOG4626 | 966 | consensus O-linked N-acetylglucosamine transferase | 99.65 | |
| PRK14574 | 822 | hmsH outer membrane protein; Provisional | 99.58 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.52 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.51 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.5 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.48 | |
| PRK10747 | 398 | putative protoheme IX biogenesis protein; Provisio | 99.47 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.46 | |
| PF13429 | 280 | TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2 | 99.44 | |
| PRK09782 | 987 | bacteriophage N4 receptor, outer membrane subunit; | 99.44 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.44 | |
| TIGR00540 | 409 | hemY_coli hemY protein. This is an uncharacterized | 99.42 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.42 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.4 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.39 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.38 | |
| COG2956 | 389 | Predicted N-acetylglucosaminyl transferase [Carboh | 99.37 | |
| KOG2076 | 895 | consensus RNA polymerase III transcription factor | 99.37 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.34 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.34 | |
| COG3071 | 400 | HemY Uncharacterized enzyme of heme biosynthesis [ | 99.31 | |
| KOG1155 | 559 | consensus Anaphase-promoting complex (APC), Cdc23 | 99.29 | |
| KOG2003 | 840 | consensus TPR repeat-containing protein [General f | 99.29 | |
| KOG1126 | 638 | consensus DNA-binding cell division cycle control | 99.27 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.2 | |
| TIGR02521 | 234 | type_IV_pilW type IV pilus biogenesis/stability pr | 99.18 | |
| KOG4318 | 1088 | consensus Bicoid mRNA stability factor [RNA proces | 99.17 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.17 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.17 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.16 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.16 | |
| KOG2002 | 1018 | consensus TPR-containing nuclear phosphoprotein th | 99.16 | |
| PRK12370 | 553 | invasion protein regulator; Provisional | 99.15 | |
| PF13041 | 50 | PPR_2: PPR repeat family | 99.13 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.12 | |
| PF12569 | 517 | NARP1: NMDA receptor-regulated protein 1 ; InterPr | 99.1 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 99.09 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 99.08 | |
| KOG0495 | 913 | consensus HAT repeat protein [RNA processing and m | 99.07 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 99.05 | |
| KOG1915 | 677 | consensus Cell cycle control protein (crooked neck | 99.04 | |
| KOG1129 | 478 | consensus TPR repeat-containing protein [General f | 98.98 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 98.93 | |
| KOG0547 | 606 | consensus Translocase of outer mitochondrial membr | 98.9 | |
| KOG1840 | 508 | consensus Kinesin light chain [Cytoskeleton] | 98.89 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.89 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.88 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.88 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.84 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.84 | |
| KOG1173 | 611 | consensus Anaphase-promoting complex (APC), Cdc16 | 98.82 | |
| KOG1174 | 564 | consensus Anaphase-promoting complex (APC), subuni | 98.81 | |
| cd05804 | 355 | StaR_like StaR_like; a well-conserved protein foun | 98.8 | |
| KOG1156 | 700 | consensus N-terminal acetyltransferase [Chromatin | 98.8 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.79 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.74 | |
| PRK11189 | 296 | lipoprotein NlpI; Provisional | 98.71 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.64 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.62 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.62 | |
| COG3063 | 250 | PilF Tfp pilus assembly protein PilF [Cell motilit | 98.6 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.58 | |
| KOG4340 | 459 | consensus Uncharacterized conserved protein [Funct | 98.54 | |
| PF04733 | 290 | Coatomer_E: Coatomer epsilon subunit; InterPro: IP | 98.54 | |
| KOG2047 | 835 | consensus mRNA splicing factor [RNA processing and | 98.53 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 98.49 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.44 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.43 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.43 | |
| KOG3785 | 557 | consensus Uncharacterized conserved protein [Funct | 98.42 | |
| PF12854 | 34 | PPR_1: PPR repeat | 98.41 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.37 | |
| PRK04841 | 903 | transcriptional regulator MalT; Provisional | 98.37 | |
| KOG1070 | 1710 | consensus rRNA processing protein Rrp5 [RNA proces | 98.36 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.35 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 98.33 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.32 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.31 | |
| KOG1125 | 579 | consensus TPR repeat-containing protein [General f | 98.27 | |
| KOG2376 | 652 | consensus Signal recognition particle, subunit Srp | 98.25 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.25 | |
| PLN02789 | 320 | farnesyltranstransferase | 98.24 | |
| KOG0985 | 1666 | consensus Vesicle coat protein clathrin, heavy cha | 98.22 | |
| TIGR03302 | 235 | OM_YfiO outer membrane assembly lipoprotein YfiO. | 98.21 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.2 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.19 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 98.18 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.18 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.18 | |
| KOG4162 | 799 | consensus Predicted calmodulin-binding protein [Si | 98.16 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.16 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.13 | |
| KOG1128 | 777 | consensus Uncharacterized conserved protein, conta | 98.12 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 98.12 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.08 | |
| KOG3617 | 1416 | consensus WD40 and TPR repeat-containing protein [ | 98.08 | |
| COG5010 | 257 | TadD Flp pilus assembly protein TadD, contains TPR | 98.05 | |
| PRK14720 | 906 | transcript cleavage factor/unknown domain fusion p | 98.05 | |
| KOG3616 | 1636 | consensus Selective LIM binding factor [Transcript | 98.04 | |
| PRK10370 | 198 | formate-dependent nitrite reductase complex subuni | 98.03 | |
| KOG0548 | 539 | consensus Molecular co-chaperone STI1 [Posttransla | 98.02 | |
| KOG3081 | 299 | consensus Vesicle coat complex COPI, epsilon subun | 98.01 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.98 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 97.94 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.94 | |
| PRK15359 | 144 | type III secretion system chaperone protein SscB; | 97.93 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 97.9 | |
| PRK15179 | 694 | Vi polysaccharide biosynthesis protein TviE; Provi | 97.88 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.87 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.84 | |
| KOG1914 | 656 | consensus mRNA cleavage and polyadenylation factor | 97.81 | |
| COG4783 | 484 | Putative Zn-dependent protease, contains TPR repea | 97.81 | |
| PF09295 | 395 | ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); Inter | 97.81 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.79 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.76 | |
| TIGR00756 | 35 | PPR pentatricopeptide repeat domain (PPR motif). T | 97.75 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.75 | |
| TIGR02552 | 135 | LcrH_SycD type III secretion low calcium response | 97.72 | |
| KOG2053 | 932 | consensus Mitochondrial inheritance and actin cyto | 97.69 | |
| PF13812 | 34 | PPR_3: Pentatricopeptide repeat domain | 97.61 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.61 | |
| PF10037 | 429 | MRP-S27: Mitochondrial 28S ribosomal protein S27; | 97.6 | |
| PF09976 | 145 | TPR_21: Tetratricopeptide repeat; InterPro: IPR018 | 97.55 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.54 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.5 | |
| PF05843 | 280 | Suf: Suppressor of forked protein (Suf); InterPro: | 97.44 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.42 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.38 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 97.38 | |
| PF08579 | 120 | RPM2: Mitochondrial ribonuclease P subunit (RPM2); | 97.38 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.37 | |
| PF01535 | 31 | PPR: PPR repeat; InterPro: IPR002885 This entry re | 97.35 | |
| cd00189 | 100 | TPR Tetratricopeptide repeat domain; typically con | 97.34 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 97.33 | |
| KOG3060 | 289 | consensus Uncharacterized conserved protein [Funct | 97.3 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 97.29 | |
| KOG1127 | 1238 | consensus TPR repeat-containing protein [RNA proce | 97.29 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.24 | |
| KOG0624 | 504 | consensus dsRNA-activated protein kinase inhibitor | 97.24 | |
| TIGR02795 | 119 | tol_pal_ybgF tol-pal system protein YbgF. Members | 97.13 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 97.1 | |
| PF06239 | 228 | ECSIT: Evolutionarily conserved signalling interme | 97.1 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 96.97 | |
| PF12895 | 84 | Apc3: Anaphase-promoting complex, cyclosome, subun | 96.96 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 96.94 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 96.94 | |
| PRK10866 | 243 | outer membrane biogenesis protein BamD; Provisiona | 96.9 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 96.89 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 96.89 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 96.88 | |
| PLN03088 | 356 | SGT1, suppressor of G2 allele of SKP1; Provisional | 96.87 | |
| PRK02603 | 172 | photosystem I assembly protein Ycf3; Provisional | 96.84 | |
| PF14938 | 282 | SNAP: Soluble NSF attachment protein, SNAP; PDB: 1 | 96.83 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.81 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.79 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.76 | |
| CHL00033 | 168 | ycf3 photosystem I assembly protein Ycf3 | 96.7 | |
| PRK15363 | 157 | pathogenicity island 2 chaperone protein SscA; Pro | 96.67 | |
| COG5107 | 660 | RNA14 Pre-mRNA 3'-end processing (cleavage and pol | 96.62 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.58 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.53 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 96.5 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.49 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.48 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 96.42 | |
| PF14559 | 68 | TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN | 96.42 | |
| PRK10153 | 517 | DNA-binding transcriptional activator CadC; Provis | 96.42 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 96.37 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 96.31 | |
| KOG2796 | 366 | consensus Uncharacterized conserved protein [Funct | 96.27 | |
| PF13525 | 203 | YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M | 96.09 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 96.08 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 96.05 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 96.03 | |
| KOG1130 | 639 | consensus Predicted G-alpha GTPase interaction pro | 96.03 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 95.97 | |
| PF13432 | 65 | TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL | 95.97 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 95.94 | |
| PF12688 | 120 | TPR_5: Tetratrico peptide repeat | 95.93 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.88 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.87 | |
| PF13414 | 69 | TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A | 95.81 | |
| COG4235 | 287 | Cytochrome c biogenesis factor [Posttranslational | 95.66 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 95.63 | |
| PF03704 | 146 | BTAD: Bacterial transcriptional activator domain; | 95.56 | |
| PF04840 | 319 | Vps16_C: Vps16, C-terminal region; InterPro: IPR00 | 95.53 | |
| KOG0553 | 304 | consensus TPR repeat-containing protein [General f | 95.49 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.41 | |
| PRK10803 | 263 | tol-pal system protein YbgF; Provisional | 95.36 | |
| COG4700 | 251 | Uncharacterized protein conserved in bacteria cont | 95.27 | |
| KOG0550 | 486 | consensus Molecular chaperone (DnaJ superfamily) [ | 95.23 | |
| COG3898 | 531 | Uncharacterized membrane-bound protein [Function u | 95.22 | |
| KOG2041 | 1189 | consensus WD40 repeat protein [General function pr | 95.17 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 95.14 | |
| PF12921 | 126 | ATP13: Mitochondrial ATPase expression; InterPro: | 95.12 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 95.05 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 95.03 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 95.02 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.97 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.91 | |
| PF09205 | 161 | DUF1955: Domain of unknown function (DUF1955); Int | 94.9 | |
| KOG1920 | 1265 | consensus IkappaB kinase complex, IKAP component [ | 94.86 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 94.74 | |
| PF13281 | 374 | DUF4071: Domain of unknown function (DUF4071) | 94.62 | |
| PF13371 | 73 | TPR_9: Tetratricopeptide repeat | 94.59 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 94.54 | |
| KOG1538 | 1081 | consensus Uncharacterized conserved protein WDR10, | 94.54 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 94.35 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 94.33 | |
| smart00299 | 140 | CLH Clathrin heavy chain repeat homology. | 94.32 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 94.3 | |
| PF13424 | 78 | TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15 | 94.28 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.19 | |
| PF10300 | 468 | DUF3808: Protein of unknown function (DUF3808); In | 94.18 | |
| COG4105 | 254 | ComL DNA uptake lipoprotein [General function pred | 94.0 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.95 | |
| KOG3941 | 406 | consensus Intermediate in Toll signal transduction | 93.8 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 93.78 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 93.58 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 93.37 | |
| PF13170 | 297 | DUF4003: Protein of unknown function (DUF4003) | 93.35 | |
| PF07079 | 549 | DUF1347: Protein of unknown function (DUF1347); In | 93.28 | |
| PF08631 | 278 | SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: | 93.25 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 93.16 | |
| PRK15331 | 165 | chaperone protein SicA; Provisional | 93.13 | |
| KOG2066 | 846 | consensus Vacuolar assembly/sorting protein VPS41 | 93.09 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 93.09 | |
| PLN03098 | 453 | LPA1 LOW PSII ACCUMULATION1; Provisional | 93.09 | |
| KOG1585 | 308 | consensus Protein required for fusion of vesicles | 92.86 | |
| PF04053 | 443 | Coatomer_WDAD: Coatomer WD associated region ; Int | 92.77 | |
| COG3118 | 304 | Thioredoxin domain-containing protein [Posttransla | 92.71 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 92.47 | |
| KOG0543 | 397 | consensus FKBP-type peptidyl-prolyl cis-trans isom | 92.37 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 92.22 | |
| KOG1258 | 577 | consensus mRNA processing protein [RNA processing | 92.17 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 92.1 | |
| KOG2114 | 933 | consensus Vacuolar assembly/sorting protein PEP5/V | 92.04 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.82 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 91.74 | |
| COG3629 | 280 | DnrI DNA-binding transcriptional activator of the | 91.56 | |
| KOG0276 | 794 | consensus Vesicle coat complex COPI, beta' subunit | 91.26 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 91.12 | |
| PRK11906 | 458 | transcriptional regulator; Provisional | 90.44 | |
| PF13512 | 142 | TPR_18: Tetratricopeptide repeat | 90.35 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 90.28 | |
| COG1729 | 262 | Uncharacterized protein conserved in bacteria [Fun | 90.16 | |
| KOG2280 | 829 | consensus Vacuolar assembly/sorting protein VPS16 | 90.03 | |
| KOG2610 | 491 | consensus Uncharacterized conserved protein [Funct | 89.86 | |
| COG4649 | 221 | Uncharacterized protein conserved in bacteria [Fun | 89.75 | |
| PF07035 | 167 | Mic1: Colon cancer-associated protein Mic1-like; I | 89.55 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 89.25 | |
| PF04184 | 539 | ST7: ST7 protein; InterPro: IPR007311 The ST7 (for | 89.14 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 88.56 | |
| PF02259 | 352 | FAT: FAT domain; InterPro: IPR003151 The FAT domai | 88.28 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 88.07 | |
| PF13428 | 44 | TPR_14: Tetratricopeptide repeat | 88.02 | |
| KOG1941 | 518 | consensus Acetylcholine receptor-associated protei | 87.94 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 87.7 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 87.64 | |
| PF02284 | 108 | COX5A: Cytochrome c oxidase subunit Va; InterPro: | 87.47 | |
| cd00923 | 103 | Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. | 87.47 | |
| PF11207 | 203 | DUF2989: Protein of unknown function (DUF2989); In | 87.42 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 87.36 | |
| KOG4555 | 175 | consensus TPR repeat-containing protein [Function | 87.1 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 87.08 | |
| PF10602 | 177 | RPN7: 26S proteasome subunit RPN7; InterPro: IPR01 | 86.86 | |
| PF13929 | 292 | mRNA_stabil: mRNA stabilisation | 86.11 | |
| PF10345 | 608 | Cohesin_load: Cohesin loading factor; InterPro: IP | 85.7 | |
| PF04097 | 613 | Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic9 | 85.37 | |
| KOG2034 | 911 | consensus Vacuolar sorting protein PEP3/VPS18 [Int | 85.33 | |
| COG0457 | 291 | NrfG FOG: TPR repeat [General function prediction | 84.93 | |
| PF09613 | 160 | HrpB1_HrpK: Bacterial type III secretion protein ( | 84.61 | |
| KOG1550 | 552 | consensus Extracellular protein SEL-1 and related | 83.81 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 83.04 | |
| PF13176 | 36 | TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_ | 82.82 | |
| COG4455 | 273 | ImpE Protein of avirulence locus involved in tempe | 81.83 | |
| KOG4570 | 418 | consensus Uncharacterized conserved protein [Funct | 81.51 | |
| KOG4234 | 271 | consensus TPR repeat-containing protein [General f | 80.13 |
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.8e-54 Score=489.10 Aligned_cols=397 Identities=16% Similarity=0.246 Sum_probs=358.5
Q ss_pred CCHHHHHHHHHhhccCc--hhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHH
Q 036072 209 LSHNLVVDVLERFRHAR--RPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAM 286 (631)
Q Consensus 209 ~~~~~~~~vl~~~~~~~--~~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li 286 (631)
.+...+..++.++...+ ..|+++|++|.++.-+.++..+++.++.+|++.|.+++|..+|+.|.. ++..+|+.+|
T Consensus 368 ~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~---pd~~Tyn~LL 444 (1060)
T PLN03218 368 RKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN---PTLSTFNMLM 444 (1060)
T ss_pred CCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC---CCHHHHHHHH
Confidence 44566777777775443 348999998865544567888888888889888999999988888875 7788899999
Q ss_pred HHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhc-ccCCChhhHHHHHHHHHhcCCHH
Q 036072 287 NAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGGWCRVKNLM 365 (631)
Q Consensus 287 ~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~-~~~p~~~~y~~Li~~~~~~g~~~ 365 (631)
.+|++.|+++.|.++|+.|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+ ++.||..+|+.||.+|++.|+++
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~e 524 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA 524 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHH
Confidence 99999999999999999999988889999999999999999999999999998875 57888999999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--cCCCCcHHHHHHHHHHHhhc------------
Q 036072 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKA--KGPSPNVRSYTIMIWKFCKQ------------ 431 (631)
Q Consensus 366 ~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~--~g~~p~~~~~~~li~~~~~~------------ 431 (631)
+|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.. .|+.||..+|+++|.+|++.
T Consensus 525 eAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~ 604 (1060)
T PLN03218 525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999999999888999999999999999999999999999999876 57888999999999888875
Q ss_pred --------CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 036072 432 --------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTI 503 (631)
Q Consensus 432 --------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 503 (631)
+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.|+.||.
T Consensus 605 M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~ 684 (1060)
T PLN03218 605 IHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGT 684 (1060)
T ss_pred HHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCH
Confidence 568899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036072 504 HTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADL 583 (631)
Q Consensus 504 ~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~ 583 (631)
.+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..+|+.++.+|
T Consensus 685 ~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~ 764 (1060)
T PLN03218 685 VSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVAS 764 (1060)
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhcCCHHHHHHHHHHHHhcCCCchH
Q 036072 584 SRAGRSYVLDELAQKMRFSGKFEVS 608 (631)
Q Consensus 584 ~~~g~~~~A~~l~~~m~~~g~~~~~ 608 (631)
++.|++++|.+++++|.+.|.....
T Consensus 765 ~k~G~le~A~~l~~~M~k~Gi~pd~ 789 (1060)
T PLN03218 765 ERKDDADVGLDLLSQAKEDGIKPNL 789 (1060)
T ss_pred HHCCCHHHHHHHHHHHHHcCCCCCH
Confidence 9999999999999999999976433
|
|
| >PLN03218 maturation of RBCL 1; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.3e-52 Score=479.56 Aligned_cols=407 Identities=17% Similarity=0.299 Sum_probs=370.4
Q ss_pred HHHHhcCC-CCCHHHHHHHHHhhccCc--hhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 036072 200 AVLDECGI-NLSHNLVVDVLERFRHAR--RPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL 276 (631)
Q Consensus 200 ~~l~~~~~-~~~~~~~~~vl~~~~~~~--~~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~ 276 (631)
..+.+.|+ .++.-....++..|...+ ..|+++|..|.. ||..+|+.+|.+|++.|+++.|.++|++|.+.|+
T Consensus 394 d~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~-----pd~~Tyn~LL~a~~k~g~~e~A~~lf~~M~~~Gl 468 (1060)
T PLN03218 394 EDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN-----PTLSTFNMLMSVCASSQDIDGALRVLRLVQEAGL 468 (1060)
T ss_pred HHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC-----CCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCC
Confidence 33455564 344444445555554433 348899887753 8999999999999999999999999999999998
Q ss_pred -CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhc-ccCCChhhHHHH
Q 036072 277 -LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVL 354 (631)
Q Consensus 277 -~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~-~~~p~~~~y~~L 354 (631)
++..+|+.+|.+|++.|++++|.++|++|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+ ++.||..+|+.|
T Consensus 469 ~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~eeAl~lf~~M~~~Gv~PD~vTYnsL 548 (1060)
T PLN03218 469 KADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVAKAFGAYGIMRSKNVKPDRVVFNAL 548 (1060)
T ss_pred CCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 688999999999999999999999999999999999999999999999999999999999999975 689999999999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhc-
Q 036072 355 LGGWCRVKNLMEAGRVWNEMID--KGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ- 431 (631)
Q Consensus 355 i~~~~~~g~~~~A~~l~~~m~~--~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~- 431 (631)
|.+|++.|++++|.++|++|.. .|+.||..+|+++|.+|++.|++++|.++|++|.+.|+.|+..+|+.+|.+|++.
T Consensus 549 I~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~M~e~gi~p~~~tynsLI~ay~k~G 628 (1060)
T PLN03218 549 ISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQMIHEYNIKGTPEVYTIAVNSCSQKG 628 (1060)
T ss_pred HHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCChHHHHHHHHHHHhcC
Confidence 9999999999999999999986 6899999999999999999999999999999999999999999999999999986
Q ss_pred -------------------CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHH
Q 036072 432 -------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYK 492 (631)
Q Consensus 432 -------------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~ 492 (631)
+..+|+++|.+|++.|++++|.++|++|.+.|+.||..+|++||.+|++.|++++|.++|+
T Consensus 629 ~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~ 708 (1060)
T PLN03218 629 DWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYE 708 (1060)
T ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHH
Confidence 7789999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 036072 493 EMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP 572 (631)
Q Consensus 493 ~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~ 572 (631)
+|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|++.|++++|.+++++|.+.|+.||
T Consensus 709 eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~Gi~pd 788 (1060)
T PLN03218 709 DIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKEDGIKPN 788 (1060)
T ss_pred HHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHh----c-------------------CCHHHHHHHHHHHHhcCCCchHHHH
Q 036072 573 VLDYNKFAADLSR----A-------------------GRSYVLDELAQKMRFSGKFEVSNVL 611 (631)
Q Consensus 573 ~~~~~~li~~~~~----~-------------------g~~~~A~~l~~~m~~~g~~~~~~~l 611 (631)
..+|++++..|.+ + +..++|..+|++|.+.|..+....+
T Consensus 789 ~~tynsLIglc~~~y~ka~~l~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~ 850 (1060)
T PLN03218 789 LVMCRCITGLCLRRFEKACALGEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVL 850 (1060)
T ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHH
Confidence 9999999876432 2 2247799999999999976543333
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=2.7e-51 Score=464.89 Aligned_cols=397 Identities=16% Similarity=0.211 Sum_probs=372.1
Q ss_pred hHHHHHHHHhcCCCCCHHHHHHHHHhhccCch--hHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 036072 195 DRNMEAVLDECGINLSHNLVVDVLERFRHARR--PAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMG 272 (631)
Q Consensus 195 ~~~l~~~l~~~~~~~~~~~~~~vl~~~~~~~~--~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~ 272 (631)
..+++..+.+.|+.++..++..++..+.+.++ .|.++|+.|. .||..+||.+|.+|++.|++++|.++|++|.
T Consensus 142 a~~l~~~m~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-----~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~ 216 (697)
T PLN03081 142 VKAVYWHVESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMP-----ERNLASWGTIIGGLVDAGNYREAFALFREMW 216 (697)
T ss_pred HHHHHHHHHHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCC-----CCCeeeHHHHHHHHHHCcCHHHHHHHHHHHH
Confidence 45677778888999999999999988877654 4999999885 3689999999999999999999999999999
Q ss_pred HCCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhH
Q 036072 273 EKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTY 351 (631)
Q Consensus 273 ~~g~-~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y 351 (631)
+.|+ ++..+|+.++.+|+..|..+.+.+++..+.+.|+.+|..+|+.||++|++.|++++|.++|++|.+ +|..+|
T Consensus 217 ~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~~~vt~ 293 (697)
T PLN03081 217 EDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCGDIEDARCVFDGMPE---KTTVAW 293 (697)
T ss_pred HhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCCCHHHHHHHHHhCCC---CChhHH
Confidence 9888 678899999999999999999999999999999999999999999999999999999999999975 499999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhc
Q 036072 352 TVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ 431 (631)
Q Consensus 352 ~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~ 431 (631)
|+||.+|++.|++++|+++|++|.+.|+.||..||+++|.+|++.|++++|.+++..|.+.|+.||..+|+.||.+|++.
T Consensus 294 n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~ 373 (697)
T PLN03081 294 NSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKW 373 (697)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999886
Q ss_pred ----------------CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 036072 432 ----------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMV 495 (631)
Q Consensus 432 ----------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~ 495 (631)
|..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.+|.+|++.|.+++|.++|+.|.
T Consensus 374 G~~~~A~~vf~~m~~~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~ 453 (697)
T PLN03081 374 GRMEDARNVFDRMPRKNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMS 453 (697)
T ss_pred CCHHHHHHHHHhCCCCCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 8889999999999999999999999999999999999999999999999999999999999998
Q ss_pred H-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC-CH
Q 036072 496 R-SGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKA-PV 573 (631)
Q Consensus 496 ~-~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p-~~ 573 (631)
+ .|+.|+..+|+.++++|++.|++++|.+++++| ++.|+..+|++|+.+|..+|+++.|..+++++.+. .| +.
T Consensus 454 ~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~--~p~~~ 528 (697)
T PLN03081 454 ENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGM--GPEKL 528 (697)
T ss_pred HhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCC--CCCCC
Confidence 6 699999999999999999999999999998876 67899999999999999999999999999999754 44 46
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 036072 574 LDYNKFAADLSRAGRSYVLDELAQKMRFSGK 604 (631)
Q Consensus 574 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 604 (631)
.+|..|++.|++.|++++|.+++++|++.|.
T Consensus 529 ~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~ 559 (697)
T PLN03081 529 NNYVVLLNLYNSSGRQAEAAKVVETLKRKGL 559 (697)
T ss_pred cchHHHHHHHHhCCCHHHHHHHHHHHHHcCC
Confidence 7899999999999999999999999999885
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1e-51 Score=479.15 Aligned_cols=409 Identities=15% Similarity=0.220 Sum_probs=365.4
Q ss_pred hHHHHHHHHhcCCCCCHHHHHHHHHhhccCch--hHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 036072 195 DRNMEAVLDECGINLSHNLVVDVLERFRHARR--PAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMG 272 (631)
Q Consensus 195 ~~~l~~~l~~~~~~~~~~~~~~vl~~~~~~~~--~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~ 272 (631)
...++..+.+.+..++......++..+.+.++ .|+++|+.|. .||..+||.+|.+|++.|++++|+++|++|.
T Consensus 105 a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~-----~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~ 179 (857)
T PLN03077 105 GSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMP-----ERDLFSWNVLVGGYAKAGYFDEALCLYHRML 179 (857)
T ss_pred HHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCC-----CCCeeEHHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 34556666677777777777777777665543 4999999885 3689999999999999999999999999999
Q ss_pred HCCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhH
Q 036072 273 EKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTY 351 (631)
Q Consensus 273 ~~g~-~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y 351 (631)
..|+ ++..+|+.++.+|+..+++..+.+++..|.+.|+.|+..+||.||.+|++.|+++.|.++|++|.. +|..+|
T Consensus 180 ~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~---~d~~s~ 256 (857)
T PLN03077 180 WAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMPR---RDCISW 256 (857)
T ss_pred HcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCCC---CCcchh
Confidence 9998 788999999999999999999999999999999999999999999999999999999999999975 589999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhc
Q 036072 352 TVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ 431 (631)
Q Consensus 352 ~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~ 431 (631)
|+||.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|+.+.|.+++..|.+.|+.||..+|+.+|.+|++.
T Consensus 257 n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~ 336 (857)
T PLN03077 257 NAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSL 336 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred ----------------CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 036072 432 ----------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMV 495 (631)
Q Consensus 432 ----------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~ 495 (631)
+..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.
T Consensus 337 g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~ 416 (857)
T PLN03077 337 GSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAE 416 (857)
T ss_pred CCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHH
Confidence 7889999999999999999999999999999999999999999999999999999999999999
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC------------------------------C-----------
Q 036072 496 RSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG------------------------------C----------- 534 (631)
Q Consensus 496 ~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g------------------------------~----------- 534 (631)
+.|+.|+..+|+.||.+|++.|++++|.++|++|.+.+ +
T Consensus 417 ~~g~~~~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~~~~pd~~t~~~lL 496 (857)
T PLN03077 417 RKGLISYVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLLTLKPNSVTLIAAL 496 (857)
T ss_pred HhCCCcchHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCHhHHHHHH
Confidence 99999888888888888888888888888777664421 1
Q ss_pred ------------------------------------------------------CCCHHHHHHHHHHHHHcCCHHHHHHH
Q 036072 535 ------------------------------------------------------CPDDNSYTVLIGGLISQDRSGEAYKY 560 (631)
Q Consensus 535 ------------------------------------------------------~p~~~t~~~li~~~~~~g~~~~A~~l 560 (631)
.+|..+||+||.+|+++|+.++|+++
T Consensus 497 ~a~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~l 576 (857)
T PLN03077 497 SACARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVEL 576 (857)
T ss_pred HHHhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHH
Confidence 34566788888888888888888889
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH-hcCCCchHHHH
Q 036072 561 LEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR-FSGKFEVSNVL 611 (631)
Q Consensus 561 l~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~g~~~~~~~l 611 (631)
|++|.+.|+.||..||+.++.+|++.|++++|.++|++|. ..|..+....+
T Consensus 577 f~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y 628 (857)
T PLN03077 577 FNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHY 628 (857)
T ss_pred HHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHH
Confidence 9998888888998899988889888899999999998888 45655433333
|
|
| >PLN03077 Protein ECB2; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=8.6e-50 Score=463.02 Aligned_cols=408 Identities=17% Similarity=0.225 Sum_probs=372.4
Q ss_pred hHHHHHHHHhcCCCCCHHHHHHHHHhhccCch--hHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 036072 195 DRNMEAVLDECGINLSHNLVVDVLERFRHARR--PAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMG 272 (631)
Q Consensus 195 ~~~l~~~l~~~~~~~~~~~~~~vl~~~~~~~~--~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~ 272 (631)
.++++..+.+.|..++...+..++..+.+.++ .|.++|+.|. .+|..+||.+|.+|++.|++++|+++|++|.
T Consensus 206 ~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~-----~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~ 280 (857)
T PLN03077 206 GREVHAHVVRFGFELDVDVVNALITMYVKCGDVVSARLVFDRMP-----RRDCISWNAMISGYFENGECLEGLELFFTMR 280 (857)
T ss_pred HHHHHHHHHHcCCCcccchHhHHHHHHhcCCCHHHHHHHHhcCC-----CCCcchhHHHHHHHHhCCCHHHHHHHHHHHH
Confidence 45677777788888888888888888876654 4999999885 3678999999999999999999999999999
Q ss_pred HCCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhH
Q 036072 273 EKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTY 351 (631)
Q Consensus 273 ~~g~-~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y 351 (631)
+.|+ |+..+|+.+|.+|++.|+.+.|.+++..|.+.|+.||..+||.|+.+|++.|++++|.++|++|.. ||..+|
T Consensus 281 ~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~---~d~~s~ 357 (857)
T PLN03077 281 ELSVDPDLMTITSVISACELLGDERLGREMHGYVVKTGFAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMET---KDAVSW 357 (857)
T ss_pred HcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCccchHHHHHHHHHHHhcCCHHHHHHHHhhCCC---CCeeeH
Confidence 9998 788899999999999999999999999999999999999999999999999999999999999975 589999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhc
Q 036072 352 TVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ 431 (631)
Q Consensus 352 ~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~ 431 (631)
|++|.+|++.|++++|+++|++|.+.|+.||..||+.+|.+|++.|+++.|.++++.|.+.|+.|+..+|+.||.+|++.
T Consensus 358 n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~ 437 (857)
T PLN03077 358 TAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASVLSACACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKC 437 (857)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHHHhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999986
Q ss_pred ----------------CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 036072 432 ----------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMV 495 (631)
Q Consensus 432 ----------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~ 495 (631)
+..+|+++|.+|++.|+.++|.++|++|.. ++.||..||+.+|.+|++.|.++.+.+++..|.
T Consensus 438 g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~ 516 (857)
T PLN03077 438 KCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVL 516 (857)
T ss_pred CCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHH
Confidence 778999999999999999999999999986 589999999888887777777777777776666
Q ss_pred HCCC------------------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036072 496 RSGF------------------------------KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545 (631)
Q Consensus 496 ~~g~------------------------------~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li 545 (631)
+.|+ .+|..+||+||.+|++.|+.++|.++|++|.+.|+.||..||+.+|
T Consensus 517 ~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll 596 (857)
T PLN03077 517 RTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSHEKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLL 596 (857)
T ss_pred HhCCCccceechHHHHHHHHcCCHHHHHHHHHhcCCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHH
Confidence 6554 5678889999999999999999999999999999999999999999
Q ss_pred HHHHHcCCHHHHHHHHHHHH-HCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHH
Q 036072 546 GGLISQDRSGEAYKYLEEML-EKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVL 611 (631)
Q Consensus 546 ~~~~~~g~~~~A~~ll~~m~-~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~l 611 (631)
.+|.+.|++++|.++|++|. +.|+.|+..+|++++.+|++.|++++|.+++++|.......+.+.+
T Consensus 597 ~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aL 663 (857)
T PLN03077 597 CACSRSGMVTQGLEYFHSMEEKYSITPNLKHYACVVDLLGRAGKLTEAYNFINKMPITPDPAVWGAL 663 (857)
T ss_pred HHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHH
Confidence 99999999999999999998 6799999999999999999999999999999999644443333333
|
|
| >PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional | Back alignment and domain information |
|---|
Probab=100.00 E-value=1.4e-49 Score=450.84 Aligned_cols=402 Identities=18% Similarity=0.220 Sum_probs=367.9
Q ss_pred CCCCCHHHHHHHHHhhccCch--hHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHH
Q 036072 206 GINLSHNLVVDVLERFRHARR--PAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFK 283 (631)
Q Consensus 206 ~~~~~~~~~~~vl~~~~~~~~--~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~ 283 (631)
+..++...+..++..+...+. .+.+++..+ .+.|+.||..+||.++.+|++.|+++.|.++|++|.+ ++..+|+
T Consensus 118 ~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m-~~~g~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~---~~~~t~n 193 (697)
T PLN03081 118 PFTLPASTYDALVEACIALKSIRCVKAVYWHV-ESSGFEPDQYMMNRVLLMHVKCGMLIDARRLFDEMPE---RNLASWG 193 (697)
T ss_pred CCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHH-HHhCCCcchHHHHHHHHHHhcCCCHHHHHHHHhcCCC---CCeeeHH
Confidence 467889999999998876553 478888766 5679999999999999999999999999999999975 4667899
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhc-ccCCChhhHHHHHHHHHhcC
Q 036072 284 IAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGGWCRVK 362 (631)
Q Consensus 284 ~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~-~~~p~~~~y~~Li~~~~~~g 362 (631)
++|.+|++.|++++|+++|++|.+.|+.|+..+|+.++.++++.|..+.+.+++..+.+ ++.+|..+||+||.+|++.|
T Consensus 194 ~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~~~l~~~~~~~g~~~d~~~~n~Li~~y~k~g 273 (697)
T PLN03081 194 TIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAGQQLHCCVLKTGVVGDTFVSCALIDMYSKCG 273 (697)
T ss_pred HHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHHHHHHHHHHHhCCCccceeHHHHHHHHHHCC
Confidence 99999999999999999999999999999999999999999999999999999999865 68899999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhc-----------
Q 036072 363 NLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ----------- 431 (631)
Q Consensus 363 ~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~----------- 431 (631)
++++|.++|++|.+ +|..+||+||.+|++.|++++|+++|++|.+.|+.||..||+++|.+|++.
T Consensus 274 ~~~~A~~vf~~m~~----~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~pd~~t~~~ll~a~~~~g~~~~a~~i~~ 349 (697)
T PLN03081 274 DIEDARCVFDGMPE----KTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVSIDQFTFSIMIRIFSRLALLEHAKQAHA 349 (697)
T ss_pred CHHHHHHHHHhCCC----CChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhccchHHHHHHHH
Confidence 99999999999964 599999999999999999999999999999999999999999999999875
Q ss_pred ---------CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 036072 432 ---------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPT 502 (631)
Q Consensus 432 ---------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 502 (631)
+..+|++||.+|++.|++++|.++|++|.+ ||..+||+||.+|++.|+.++|.++|++|.+.|+.||
T Consensus 350 ~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~----~d~~t~n~lI~~y~~~G~~~~A~~lf~~M~~~g~~Pd 425 (697)
T PLN03081 350 GLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPR----KNLISWNALIAGYGNHGRGTKAVEMFERMIAEGVAPN 425 (697)
T ss_pred HHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCC----CCeeeHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCC
Confidence 678999999999999999999999999965 6999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036072 503 IHTYNMIMKSYFQTGNYEMGRKVWDEMIR-RGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAA 581 (631)
Q Consensus 503 ~~t~~~Li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~ 581 (631)
..||+.++.+|++.|++++|.++|+.|.+ .|+.|+..+|+.||.+|++.|++++|.+++++| ++.|+..+|++|+.
T Consensus 426 ~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~eA~~~~~~~---~~~p~~~~~~~Ll~ 502 (697)
T PLN03081 426 HVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDEAYAMIRRA---PFKPTVNMWAALLT 502 (697)
T ss_pred HHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHHHHHHHHHC---CCCCCHHHHHHHHH
Confidence 99999999999999999999999999986 699999999999999999999999999998765 67899999999999
Q ss_pred HHHhcCCHHHHHHHHHHHHhcCCC------chHHHHH---HHHHhhhhhh
Q 036072 582 DLSRAGRSYVLDELAQKMRFSGKF------EVSNVLA---RWAETTKNRV 622 (631)
Q Consensus 582 ~~~~~g~~~~A~~l~~~m~~~g~~------~~~~~l~---~~~~~~k~~~ 622 (631)
+|...|+.+.|.++++++...+.. .+.+++. +|.+..+.+.
T Consensus 503 a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~ 552 (697)
T PLN03081 503 ACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVE 552 (697)
T ss_pred HHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHH
Confidence 999999999999999998754432 3445554 4554444443
|
|
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.91 E-value=1.1e-19 Score=213.24 Aligned_cols=381 Identities=10% Similarity=0.036 Sum_probs=242.5
Q ss_pred hHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 036072 227 PAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMN 306 (631)
Q Consensus 227 ~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~ 306 (631)
.|.+.|..+.+.. +.+...+..+...+...|++++|..+|+++...++.+..++..+...+...|+.++|..+|+.+.
T Consensus 483 ~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 560 (899)
T TIGR02917 483 KAREAFEKALSIE--PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAA 560 (899)
T ss_pred HHHHHHHHHHhhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3666665543221 22344555666666666666666666666666555555666666666666666666666666665
Q ss_pred hCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 036072 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH 386 (631)
Q Consensus 307 ~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty 386 (631)
+.+ +.+...+..+...|...|++++|..+++.+.+..+.+..+|..+...|.+.|++++|...|+.+.+.. +.+...+
T Consensus 561 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~ 638 (899)
T TIGR02917 561 ELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALAL 638 (899)
T ss_pred HhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHH
Confidence 543 34455555666666666666666666666655555556666666666666666666666666665542 2244555
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhc-------------------CHHHHHHHHHHHhccC
Q 036072 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ-------------------NAAVYTCLITGFGNRR 447 (631)
Q Consensus 387 ~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~-------------------~~~~~~~li~~~~~~g 447 (631)
..+..++.+.|++++|...++.+.+.. ..+...+..+...+... +...+..+...+...|
T Consensus 639 ~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g 717 (899)
T TIGR02917 639 LLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQK 717 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCC
Confidence 566666666666666666666665532 11233444443333321 4455666777777888
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 036072 448 RMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWD 527 (631)
Q Consensus 448 ~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~ 527 (631)
++++|.+.|+.+.+.+ |+..++..+..++.+.|++++|.+.++++.+.. +.+...+..+...|...|++++|...|+
T Consensus 718 ~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~ 794 (899)
T TIGR02917 718 DYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLRTALAELYLAQKDYDKAIKHYR 794 (899)
T ss_pred CHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 8888888888877654 344566667777888888888888888877753 4467777777888888888888888888
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCch
Q 036072 528 EMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEV 607 (631)
Q Consensus 528 ~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~ 607 (631)
++.+... .+..+++.+...+...|+ .+|+.+++++.+.. +-+...+..+..++...|++++|.++++++.+.+.. .
T Consensus 795 ~~~~~~p-~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~-~ 870 (899)
T TIGR02917 795 TVVKKAP-DNAVVLNNLAWLYLELKD-PRALEYAEKALKLA-PNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE-A 870 (899)
T ss_pred HHHHhCC-CCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC-C
Confidence 8877643 367777777777777777 67888888777653 334556667777777888888888888877776543 3
Q ss_pred HHHHHHHHHhhh
Q 036072 608 SNVLARWAETTK 619 (631)
Q Consensus 608 ~~~l~~~~~~~k 619 (631)
..++...+....
T Consensus 871 ~~~~~~l~~~~~ 882 (899)
T TIGR02917 871 AAIRYHLALALL 882 (899)
T ss_pred hHHHHHHHHHHH
Confidence 333333333333
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein | Back alignment and domain information |
|---|
Probab=99.90 E-value=2.6e-19 Score=210.01 Aligned_cols=365 Identities=15% Similarity=0.075 Sum_probs=254.9
Q ss_pred hHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 036072 227 PAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMN 306 (631)
Q Consensus 227 ~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~ 306 (631)
.|.+++..+... .+.+..+|..+...+...|++++|...|+++.+..+.+...+..+...+...|++++|.+.|+.+.
T Consensus 449 ~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 526 (899)
T TIGR02917 449 KALAAAKKLEKK--QPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAANLARIDIQEGNPDDAIQRFEKVL 526 (899)
T ss_pred HHHHHHHHHHHh--CCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 466666655432 234566777777777777777777777777777666666677777777777777777777777777
Q ss_pred hCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 036072 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH 386 (631)
Q Consensus 307 ~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty 386 (631)
+.. +.+..++..+...+.+.|+.++|..+++++....+.+...+..++..|.+.|++++|..+++.+.+. ...+..+|
T Consensus 527 ~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~ 604 (899)
T TIGR02917 527 TID-PKNLRAILALAGLYLRTGNEEEAVAWLEKAAELNPQEIEPALALAQYYLGKGQLKKALAILNEAADA-APDSPEAW 604 (899)
T ss_pred HhC-cCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCHHHH
Confidence 654 4566677777777777777777777777776655566667777777777777777777777777764 34456677
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhc-------------------CHHHHHHHHHHHhccC
Q 036072 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ-------------------NAAVYTCLITGFGNRR 447 (631)
Q Consensus 387 ~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~-------------------~~~~~~~li~~~~~~g 447 (631)
..+..++...|++++|...|+.+.+... .+...+..+...+... +..++..++..+...|
T Consensus 605 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 683 (899)
T TIGR02917 605 LMLGRAQLAAGDLNKAVSSFKKLLALQP-DSALALLLLADAYAVMKNYAKAITSLKRALELKPDNTEAQIGLAQLLLAAK 683 (899)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcC
Confidence 7777777777777777777777766432 2333444444444321 4566777777777777
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 036072 448 RMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWD 527 (631)
Q Consensus 448 ~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~ 527 (631)
++++|.++++.+.+.. +.+...+..+...+...|++++|.+.|+.+.+.+ |+..++..+..++...|++++|.+.++
T Consensus 684 ~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~A~~~~~ 760 (899)
T TIGR02917 684 RTESAKKIAKSLQKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRA--PSSQNAIKLHRALLASGNTAEAVKTLE 760 (899)
T ss_pred CHHHHHHHHHHHHhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--CCchHHHHHHHHHHHCCCHHHHHHHHH
Confidence 7777777777777664 3356667777777777777777777777777653 444666677777777777777777777
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036072 528 EMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFS 602 (631)
Q Consensus 528 ~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 602 (631)
.+.+... .+...+..+...|...|+.++|.+.|+++.+.. +.+...+..+...+...|+ ++|++++++....
T Consensus 761 ~~l~~~~-~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~ 832 (899)
T TIGR02917 761 AWLKTHP-NDAVLRTALAELYLAQKDYDKAIKHYRTVVKKA-PDNAVVLNNLAWLYLELKD-PRALEYAEKALKL 832 (899)
T ss_pred HHHHhCC-CCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhh
Confidence 7776543 366777777777777777777777777777664 4566677777777777777 6677777776543
|
This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator. |
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.88 E-value=1.3e-19 Score=192.40 Aligned_cols=302 Identities=15% Similarity=0.069 Sum_probs=247.7
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcC---HHHHHHHHHHHHcCCC
Q 036072 253 SILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAG---VDTINCLLENLGRSKL 329 (631)
Q Consensus 253 ~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~---~~~~~~Ll~~~~~~g~ 329 (631)
..+...|++++|+..|+++.+.++.+..++..+...+...|++++|..+++.+.+.+..++ ..++..+...|.+.|+
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 3456779999999999999998887888999999999999999999999999987542221 3567888999999999
Q ss_pred hHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHHHHHHH
Q 036072 330 PKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD----VVAHNIMLEGLLKIGKRSDAIKL 405 (631)
Q Consensus 330 ~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~ty~~li~~~~~~g~~~~A~~l 405 (631)
+++|..+|+++.+..+.+..+++.++..+.+.|++++|.+.++.+.+.+..++ ...|..+...+.+.|++++|.+.
T Consensus 123 ~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~ 202 (389)
T PRK11788 123 LDRAEELFLQLVDEGDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARAL 202 (389)
T ss_pred HHHHHHHHHHHHcCCcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHH
Confidence 99999999999876666788999999999999999999999999988654332 22455677788899999999999
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 036072 406 FEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPD 485 (631)
Q Consensus 406 l~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 485 (631)
|+++.+.. |+ +...+..+...|.+.|++++|.++|+++.+.+......+++.++.+|...|+++
T Consensus 203 ~~~al~~~--p~--------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~ 266 (389)
T PRK11788 203 LKKALAAD--PQ--------------CVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEA 266 (389)
T ss_pred HHHHHhHC--cC--------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHH
Confidence 99988753 33 223455677888889999999999999987643333467888899999999999
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---cCCHHHHHHHHH
Q 036072 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLIS---QDRSGEAYKYLE 562 (631)
Q Consensus 486 ~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~---~g~~~~A~~ll~ 562 (631)
+|...++++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+..+++.++..+.. .|+.+++..+++
T Consensus 267 ~A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~ 342 (389)
T PRK11788 267 EGLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLR 342 (389)
T ss_pred HHHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHH
Confidence 999999999886 466667788999999999999999999988876 5788888888887775 558899999999
Q ss_pred HHHHCCCCCCHH
Q 036072 563 EMLEKGMKAPVL 574 (631)
Q Consensus 563 ~m~~~g~~p~~~ 574 (631)
+|.++++.|++.
T Consensus 343 ~~~~~~~~~~p~ 354 (389)
T PRK11788 343 DLVGEQLKRKPR 354 (389)
T ss_pred HHHHHHHhCCCC
Confidence 999887776655
|
|
| >PRK11788 tetratricopeptide repeat protein; Provisional | Back alignment and domain information |
|---|
Probab=99.86 E-value=3.3e-18 Score=181.52 Aligned_cols=300 Identities=17% Similarity=0.094 Sum_probs=248.6
Q ss_pred HHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCC----ChhhHHHHHHHHHhc
Q 036072 286 MNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTP----NLTTYTVLLGGWCRV 361 (631)
Q Consensus 286 i~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p----~~~~y~~Li~~~~~~ 361 (631)
...+...|++++|+..|..+.+.. +.+..++..+...+...|++++|..+++.+...... ....+..+...|.+.
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~ 120 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD-PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKA 120 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHC
Confidence 445678899999999999999975 456778999999999999999999999998764211 125688899999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHH
Q 036072 362 KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLIT 441 (631)
Q Consensus 362 g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~ 441 (631)
|++++|..+|+++.+. -..+..+++.++..+.+.|++++|.+.++.+.+.+..+.... ....+..+..
T Consensus 121 g~~~~A~~~~~~~l~~-~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-----------~~~~~~~la~ 188 (389)
T PRK11788 121 GLLDRAEELFLQLVDE-GDFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVE-----------IAHFYCELAQ 188 (389)
T ss_pred CCHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHH-----------HHHHHHHHHH
Confidence 9999999999999875 234678899999999999999999999999988654332211 1123456777
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 036072 442 GFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEM 521 (631)
Q Consensus 442 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~ 521 (631)
.+.+.|++++|..+|+++.+.. +.+...+..+...+.+.|++++|.++++++.+.+......+++.++.+|...|++++
T Consensus 189 ~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~ 267 (389)
T PRK11788 189 QALARGDLDAARALLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQDPEYLSEVLPKLMECYQALGDEAE 267 (389)
T ss_pred HHHhCCCHHHHHHHHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHChhhHHHHHHHHHHHHHHcCCHHH
Confidence 8889999999999999998764 234667888889999999999999999999976422235678899999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh---cCCHHHHHHHHHH
Q 036072 522 GRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR---AGRSYVLDELAQK 598 (631)
Q Consensus 522 A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~---~g~~~~A~~l~~~ 598 (631)
|...++++.+. .|+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+.+++..++++
T Consensus 268 A~~~l~~~~~~--~p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~ 343 (389)
T PRK11788 268 GLEFLRRALEE--YPGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRD 343 (389)
T ss_pred HHHHHHHHHHh--CCCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHH
Confidence 99999999886 456667788999999999999999999999886 6888899988888775 5689999999999
Q ss_pred HHhcC
Q 036072 599 MRFSG 603 (631)
Q Consensus 599 m~~~g 603 (631)
|.+.+
T Consensus 344 ~~~~~ 348 (389)
T PRK11788 344 LVGEQ 348 (389)
T ss_pred HHHHH
Confidence 88655
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=4e-15 Score=166.80 Aligned_cols=394 Identities=10% Similarity=0.046 Sum_probs=289.4
Q ss_pred CCCHHHHHHHHHHHHHhhcchHHHHHHHHhcCCCCCHHHHHHHHHhhc--cCchhHHHHHHHhhcCCCCCCCHHHHHHHH
Q 036072 175 TADPREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDVLERFR--HARRPAFRFFCWAGDKPGFAHNSRTYNSMM 252 (631)
Q Consensus 175 ~~~~~~l~~~~~~i~~~~~~~~~l~~~l~~~~~~~~~~~~~~vl~~~~--~~~~~A~~~f~~~~~~~g~~p~~~~y~~li 252 (631)
-...++.+.+|-.++....-.+ ++.|..-. +..++..+. .....|+.++.-+.... .-+...+..++
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~---~~~~~~~~~~~g~~~~A~~l~~~~l~~~--p~~~~~l~~l~ 83 (656)
T PRK15174 15 LLKQEDWEGLCLYFSQHPEKVR------DSAGNEQN---IILFAIACLRKDETDVGLTLLSDRVLTA--KNGRDLLRRWV 83 (656)
T ss_pred hhhhhchhhHhHHhhcccHhhh------hhcccccC---HHHHHHHHHhcCCcchhHHHhHHHHHhC--CCchhHHHHHh
Confidence 3455677888877765543222 23332222 222222222 22234777776654332 12245555666
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHH
Q 036072 253 SILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKE 332 (631)
Q Consensus 253 ~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~ 332 (631)
......|+++.|...|+++.+..+.+...+..+...+...|++++|++.++.+.+.. +.+...+..+...+...|+.++
T Consensus 84 ~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l~~~g~~~~Ai~~l~~Al~l~-P~~~~a~~~la~~l~~~g~~~e 162 (656)
T PRK15174 84 ISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVLLKSKQYATVADLAEQAWLAF-SGNSQIFALHLRTLVLMDKELQ 162 (656)
T ss_pred hhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCChHH
Confidence 777789999999999999999988888999999999999999999999999999874 5567788889999999999999
Q ss_pred HHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036072 333 AQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412 (631)
Q Consensus 333 A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~ 412 (631)
|...++.+....+.+...+..+. .+...|++++|..+++.+.+....++...+..+...+.+.|++++|+..++.+.+.
T Consensus 163 A~~~~~~~~~~~P~~~~a~~~~~-~l~~~g~~~eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~ 241 (656)
T PRK15174 163 AISLARTQAQEVPPRGDMIATCL-SFLNKSRLPEDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR 241 (656)
T ss_pred HHHHHHHHHHhCCCCHHHHHHHH-HHHHcCCHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 99999988665455555554443 47889999999999999887643344555566678889999999999999999875
Q ss_pred CCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 036072 413 GPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDI----VYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAV 488 (631)
Q Consensus 413 g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~----A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~ 488 (631)
. |+ +...+..+...|...|++++ |...|++..+... .+...+..+...+...|++++|.
T Consensus 242 ~--p~--------------~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~Al~l~P-~~~~a~~~lg~~l~~~g~~~eA~ 304 (656)
T PRK15174 242 G--LD--------------GAALRRSLGLAYYQSGRSREAKLQAAEHWRHALQFNS-DNVRIVTLYADALIRTGQNEKAI 304 (656)
T ss_pred C--CC--------------CHHHHHHHHHHHHHcCCchhhHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHCCCHHHHH
Confidence 3 44 44556677888899999986 8999999887643 36778899999999999999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 036072 489 RIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD-NSYTVLIGGLISQDRSGEAYKYLEEMLEK 567 (631)
Q Consensus 489 ~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~li~~~~~~g~~~~A~~ll~~m~~~ 567 (631)
..+++..+.. +-+...+..+..+|...|++++|...|+.+.+.+ |+. ..+..+..++...|+.++|.+.|++..+.
T Consensus 305 ~~l~~al~l~-P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~ 381 (656)
T PRK15174 305 PLLQQSLATH-PDLPYVRAMYARALRQVGQYTAASDEFVQLAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQA 381 (656)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999864 3346677888999999999999999999998763 343 33444567788999999999999999876
Q ss_pred CCCCCHHHH----HHHHHHHHhcCCHHHHHHHHHHHHh
Q 036072 568 GMKAPVLDY----NKFAADLSRAGRSYVLDELAQKMRF 601 (631)
Q Consensus 568 g~~p~~~~~----~~li~~~~~~g~~~~A~~l~~~m~~ 601 (631)
...-....| ..+-.++...+..+....+..++..
T Consensus 382 ~P~~~~~~~~ea~~~~~~~~~~~~~~~~~~~W~~~~~~ 419 (656)
T PRK15174 382 RASHLPQSFEEGLLALDGQISAVNLPPERLDWAWEVAG 419 (656)
T ss_pred ChhhchhhHHHHHHHHHHHHHhcCCccchhhHHHHHhc
Confidence 322112223 3444444455555544455555543
|
|
| >PRK15174 Vi polysaccharide export protein VexE; Provisional | Back alignment and domain information |
|---|
Probab=99.80 E-value=1.9e-15 Score=169.44 Aligned_cols=333 Identities=8% Similarity=-0.022 Sum_probs=274.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcC
Q 036072 248 YNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS 327 (631)
Q Consensus 248 y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~ 327 (631)
.-.++..+.+.|++++|..+++......+-+...+..++.+....|++++|+..|+.+.+.. +.+...+..+...+...
T Consensus 45 ~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~-P~~~~a~~~la~~l~~~ 123 (656)
T PRK15174 45 IILFAIACLRKDETDVGLTLLSDRVLTAKNGRDLLRRWVISPLASSQPDAVLQVVNKLLAVN-VCQPEDVLLVASVLLKS 123 (656)
T ss_pred HHHHHHHHHhcCCcchhHHHhHHHHHhCCCchhHHHHHhhhHhhcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHc
Confidence 34567778889999999999999999988888888888889999999999999999999875 55677888899999999
Q ss_pred CChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 036072 328 KLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFE 407 (631)
Q Consensus 328 g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~ 407 (631)
|++++|...+++..+..+.+...+..+...+...|++++|...++.+...... +...+..+ ..+...|++++|...++
T Consensus 124 g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~-~~~a~~~~-~~l~~~g~~~eA~~~~~ 201 (656)
T PRK15174 124 KQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPP-RGDMIATC-LSFLNKSRLPEDHDLAR 201 (656)
T ss_pred CCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCC-CHHHHHHH-HHHHHcCCHHHHHHHHH
Confidence 99999999999998776777889999999999999999999999988765333 23333333 34788999999999999
Q ss_pred HHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH-
Q 036072 408 VMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDE- 486 (631)
Q Consensus 408 ~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~- 486 (631)
.+.+....++.. .+..+...+.+.|++++|...++...+... .+...+..+...+...|++++
T Consensus 202 ~~l~~~~~~~~~---------------~~~~l~~~l~~~g~~~eA~~~~~~al~~~p-~~~~~~~~Lg~~l~~~G~~~eA 265 (656)
T PRK15174 202 ALLPFFALERQE---------------SAGLAVDTLCAVGKYQEAIQTGESALARGL-DGAALRRSLGLAYYQSGRSREA 265 (656)
T ss_pred HHHhcCCCcchh---------------HHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHHHcCCchhh
Confidence 987753222222 122345667788999999999999987643 367788889999999999986
Q ss_pred ---HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 036072 487 ---AVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEE 563 (631)
Q Consensus 487 ---A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~ 563 (631)
|...|++..+.. +.+...+..+...+...|++++|...+++..+.... +...+..+..+|.+.|++++|...+++
T Consensus 266 ~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~-~~~a~~~La~~l~~~G~~~eA~~~l~~ 343 (656)
T PRK15174 266 KLQAAEHWRHALQFN-SDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPD-LPYVRAMYARALRQVGQYTAASDEFVQ 343 (656)
T ss_pred HHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 899999999863 346778999999999999999999999999986433 567788889999999999999999999
Q ss_pred HHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 036072 564 MLEKGMKAPV-LDYNKFAADLSRAGRSYVLDELAQKMRFSG 603 (631)
Q Consensus 564 m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 603 (631)
+.... |+. ..+..+..++...|+.++|.+.+++.....
T Consensus 344 al~~~--P~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~ 382 (656)
T PRK15174 344 LAREK--GVTSKWNRYAAAALLQAGKTSEAESVFEHYIQAR 382 (656)
T ss_pred HHHhC--ccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 98763 443 334456778999999999999999876553
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.75 E-value=6.4e-14 Score=167.58 Aligned_cols=362 Identities=10% Similarity=0.042 Sum_probs=239.7
Q ss_pred hHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCH--HHH------------HHHHHHHHHc
Q 036072 227 PAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSM--ETF------------KIAMNAFAAA 292 (631)
Q Consensus 227 ~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~--~~~------------~~li~~~~~~ 292 (631)
.|...|+...+.. +-+...+..+..++.+.|++++|+..|++..+..+.+. ..+ ......+.+.
T Consensus 287 ~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~ 364 (1157)
T PRK11447 287 KAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKA 364 (1157)
T ss_pred HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHC
Confidence 3555555443221 12355555666666666666666666666555443211 111 1112344455
Q ss_pred cCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhh----------------------
Q 036072 293 KERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTT---------------------- 350 (631)
Q Consensus 293 g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~---------------------- 350 (631)
|++++|+..|+++.+.. +.+...+..+..++...|++++|++.|+++.+..+.+...
T Consensus 365 g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~L~~l~~~~~~~~A~~~l~~ 443 (1157)
T PRK11447 365 NNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRGLANLYRQQSPEKALAFIAS 443 (1157)
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 66666666666665543 3344455555566666666666666666554432222222
Q ss_pred --------------------HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036072 351 --------------------YTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMK 410 (631)
Q Consensus 351 --------------------y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~ 410 (631)
+..+...+...|++++|++.|++..+... -+...+..+...|.+.|++++|...++++.
T Consensus 444 l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~~P-~~~~~~~~LA~~~~~~G~~~~A~~~l~~al 522 (1157)
T PRK11447 444 LSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLALDP-GSVWLTYRLAQDLRQAGQRSQADALMRRLA 522 (1157)
T ss_pred CCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 22334456678999999999999887532 245667778888999999999999999887
Q ss_pred HcCCCCcHHHHHHHHHHHhhc-----------------------------CHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 036072 411 AKGPSPNVRSYTIMIWKFCKQ-----------------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEE 461 (631)
Q Consensus 411 ~~g~~p~~~~~~~li~~~~~~-----------------------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 461 (631)
+.........|...+. +... ....+..+...+...|+.++|.++++.
T Consensus 523 ~~~P~~~~~~~a~al~-l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~--- 598 (1157)
T PRK11447 523 QQKPNDPEQVYAYGLY-LSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ--- 598 (1157)
T ss_pred HcCCCCHHHHHHHHHH-HHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh---
Confidence 6432211112211110 0000 011123456678889999999999872
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 036072 462 RGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSY 541 (631)
Q Consensus 462 ~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~ 541 (631)
.+.+...+..+...+.+.|+.++|+..|++..+.. +.+...+..++..|...|++++|.+.++.+.+... .+...+
T Consensus 599 --~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~-P~~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~p-~~~~~~ 674 (1157)
T PRK11447 599 --QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTRE-PGNADARLGLIEVDIAQGDLAAARAQLAKLPATAN-DSLNTQ 674 (1157)
T ss_pred --CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhccCC-CChHHH
Confidence 34466677888889999999999999999999864 44688899999999999999999999998876532 256667
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHCCC--CC---CHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036072 542 TVLIGGLISQDRSGEAYKYLEEMLEKGM--KA---PVLDYNKFAADLSRAGRSYVLDELAQKMR 600 (631)
Q Consensus 542 ~~li~~~~~~g~~~~A~~ll~~m~~~g~--~p---~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 600 (631)
..+..++...|++++|.+++++++...- .| +...+..+...+.+.|++++|++.+++..
T Consensus 675 ~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~A~~~y~~Al 738 (1157)
T PRK11447 675 RRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQALETYKDAM 738 (1157)
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 7788889999999999999999987532 22 23467777889999999999999999875
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.75 E-value=1.4e-13 Score=154.43 Aligned_cols=355 Identities=11% Similarity=-0.022 Sum_probs=269.5
Q ss_pred hhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 036072 226 RPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELM 305 (631)
Q Consensus 226 ~~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m 305 (631)
..|++.|..... ..|+...|..+..+|.+.|++++|+..++...+..+....++..+..+|...|++++|+.-|...
T Consensus 144 ~~Ai~~y~~al~---~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~a~a~~~lg~~~eA~~~~~~~ 220 (615)
T TIGR00990 144 NKAIKLYSKAIE---CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELDPDYSKALNRRANAYDGLGKYADALLDLTAS 220 (615)
T ss_pred HHHHHHHHHHHh---cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 348888876543 35677889999999999999999999999999988878889999999999999999998766544
Q ss_pred HhCCCC--------------------------------cCHHHHHHH---------------------------HHHH--
Q 036072 306 NKYKFK--------------------------------AGVDTINCL---------------------------LENL-- 324 (631)
Q Consensus 306 ~~~g~~--------------------------------~~~~~~~~L---------------------------l~~~-- 324 (631)
....-. +........ +..+
T Consensus 221 ~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 300 (615)
T TIGR00990 221 CIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNELDEETGNGQLQLGLK 300 (615)
T ss_pred HHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhcccccccccccchHHHHHH
Confidence 322100 000000000 0000
Q ss_pred ----HcCCChHHHHHHHHHHhcc---cCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHc
Q 036072 325 ----GRSKLPKEAQLLFDKLKHR---FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD-VVAHNIMLEGLLKI 396 (631)
Q Consensus 325 ----~~~g~~~~A~~l~~~m~~~---~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~ 396 (631)
...+.+++|...|+...+. .+.+...|+.+...+...|++++|+..|++..+. .|+ ...|..+...+...
T Consensus 301 ~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~~~~~~~~la~~~~~~ 378 (615)
T TIGR00990 301 SPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPRVTQSYIKRASMNLEL 378 (615)
T ss_pred HHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHC
Confidence 1125678888888887643 2334567888888899999999999999998875 344 56788888889999
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036072 397 GKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK 476 (631)
Q Consensus 397 g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~ 476 (631)
|++++|...|+.+.+. .|+ +..+|..+...+...|++++|...|++..+... .+...+..+..
T Consensus 379 g~~~eA~~~~~~al~~--~p~--------------~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~P-~~~~~~~~la~ 441 (615)
T TIGR00990 379 GDPDKAEEDFDKALKL--NSE--------------DPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLDP-DFIFSHIQLGV 441 (615)
T ss_pred CCHHHHHHHHHHHHHh--CCC--------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCc-cCHHHHHHHHH
Confidence 9999999999988775 344 455667778889999999999999999987643 25677778888
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH------HHHHHHHHHHH
Q 036072 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDN------SYTVLIGGLIS 550 (631)
Q Consensus 477 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------t~~~li~~~~~ 550 (631)
++.+.|++++|+..|++..+.. +-+...++.+..++...|++++|.+.|++..+.....+.. .++..+..+..
T Consensus 442 ~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~ 520 (615)
T TIGR00990 442 TQYKEGSIASSMATFRRCKKNF-PEAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQW 520 (615)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHH
Confidence 9999999999999999998753 3457889999999999999999999999988753221111 12222223344
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 036072 551 QDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGK 604 (631)
Q Consensus 551 ~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 604 (631)
.|++++|.+++++..... +.+...+..+...+.+.|++++|.+++++..+...
T Consensus 521 ~~~~~eA~~~~~kAl~l~-p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~ 573 (615)
T TIGR00990 521 KQDFIEAENLCEKALIID-PECDIAVATMAQLLLQQGDVDEALKLFERAAELAR 573 (615)
T ss_pred hhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhc
Confidence 699999999999998864 33455788999999999999999999998866543
|
|
| >PRK11447 cellulose synthase subunit BcsC; Provisional | Back alignment and domain information |
|---|
Probab=99.74 E-value=2.3e-13 Score=162.86 Aligned_cols=364 Identities=14% Similarity=0.078 Sum_probs=261.1
Q ss_pred HHHHHHHHhhccCch--hHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q 036072 212 NLVVDVLERFRHARR--PAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAF 289 (631)
Q Consensus 212 ~~~~~vl~~~~~~~~--~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~ 289 (631)
..+...+..+..... .|...+....... -.|+.. .......+...|++++|+..|++..+..+.+..++..+..++
T Consensus 236 ~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~-~dp~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~ 313 (1157)
T PRK11447 236 AALQKYLQVFSDGDSVAAARSQLAEQQKQL-ADPAFR-ARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAY 313 (1157)
T ss_pred HHHHHHHHHCCCchHHHHHHHHHHHHHHhc-cCcchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 344444555544332 2455554432221 122222 223455677899999999999999998888899999999999
Q ss_pred HHccCHHHHHHHHHHHHhCCCCc-CHH------------HHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHH
Q 036072 290 AAAKERKKAVAIFELMNKYKFKA-GVD------------TINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLG 356 (631)
Q Consensus 290 ~~~g~~~~A~~v~~~m~~~g~~~-~~~------------~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~ 356 (631)
.+.|++++|+..|+...+..-.. ... ....+...+.+.|++++|...|+++.+..+.+...+..+..
T Consensus 314 ~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~P~~~~a~~~Lg~ 393 (1157)
T PRK11447 314 SQQGDRARAVAQFEKALALDPHSSNRDKWESLLKVNRYWLLIQQGDAALKANNLAQAERLYQQARQVDNTDSYAVLGLGD 393 (1157)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCccchhHHHHHHHhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 99999999999999998764221 111 11233567889999999999999998877777888999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHH------------------------------------------HHHHHH
Q 036072 357 GWCRVKNLMEAGRVWNEMIDKGFKPD-VVAHN------------------------------------------IMLEGL 393 (631)
Q Consensus 357 ~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~------------------------------------------~li~~~ 393 (631)
.+...|++++|++.|++..+.. |+ ...+. .+...+
T Consensus 394 ~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~~L~~l~~~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~ 471 (1157)
T PRK11447 394 VAMARKDYAAAERYYQQALRMD--PGNTNAVRGLANLYRQQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEAL 471 (1157)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHH
Confidence 9999999999999999988752 22 22222 123345
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 036072 394 LKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNA 473 (631)
Q Consensus 394 ~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 473 (631)
...|++++|++.|++..+. .|+ +..++..+...|.+.|++++|...++++.+.... +...+..
T Consensus 472 ~~~g~~~eA~~~~~~Al~~--~P~--------------~~~~~~~LA~~~~~~G~~~~A~~~l~~al~~~P~-~~~~~~a 534 (1157)
T PRK11447 472 ENQGKWAQAAELQRQRLAL--DPG--------------SVWLTYRLAQDLRQAGQRSQADALMRRLAQQKPN-DPEQVYA 534 (1157)
T ss_pred HHCCCHHHHHHHHHHHHHh--CCC--------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHH
Confidence 5689999999999999885 454 3334445566677777777777777776654221 2222222
Q ss_pred H--------------------------------------------HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 036072 474 L--------------------------------------------IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMI 509 (631)
Q Consensus 474 l--------------------------------------------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~L 509 (631)
+ ...+...|+.++|.++++. .+.+...+..+
T Consensus 535 ~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~L 609 (1157)
T PRK11447 535 YGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTL 609 (1157)
T ss_pred HHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHH
Confidence 2 2334445555555555541 23455667788
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 036072 510 MKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS 589 (631)
Q Consensus 510 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~ 589 (631)
...|.+.|++++|+..|++..+.... +...+..++..|...|++++|.+.++.+.+.. +.+...+..+..++.+.|++
T Consensus 610 a~~~~~~g~~~~A~~~y~~al~~~P~-~~~a~~~la~~~~~~g~~~eA~~~l~~ll~~~-p~~~~~~~~la~~~~~~g~~ 687 (1157)
T PRK11447 610 ADWAQQRGDYAAARAAYQRVLTREPG-NADARLGLIEVDIAQGDLAAARAQLAKLPATA-NDSLNTQRRVALAWAALGDT 687 (1157)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHhccC-CCChHHHHHHHHHHHhCCCH
Confidence 89999999999999999999987443 68889999999999999999999999887653 33456677888999999999
Q ss_pred HHHHHHHHHHHhcC
Q 036072 590 YVLDELAQKMRFSG 603 (631)
Q Consensus 590 ~~A~~l~~~m~~~g 603 (631)
++|.++++++....
T Consensus 688 ~eA~~~~~~al~~~ 701 (1157)
T PRK11447 688 AAAQRTFNRLIPQA 701 (1157)
T ss_pred HHHHHHHHHHhhhC
Confidence 99999999987643
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.74 E-value=3.4e-15 Score=153.18 Aligned_cols=329 Identities=15% Similarity=0.115 Sum_probs=214.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHH-HHHH
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINC-LLEN 323 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~-Ll~~ 323 (631)
..+|..+..++-..|++++|+.+++.+.+..+-..+.|..+..++...|+.+.|.+.|...++. .|+.....+ +...
T Consensus 116 ae~ysn~aN~~kerg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alql--nP~l~ca~s~lgnL 193 (966)
T KOG4626|consen 116 AEAYSNLANILKERGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQL--NPDLYCARSDLGNL 193 (966)
T ss_pred HHHHHHHHHHHHHhchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhc--CcchhhhhcchhHH
Confidence 5788888888888888888888888888887777788888888888888888888888888876 355444333 3334
Q ss_pred HHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHH
Q 036072 324 LGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD-VVAHNIMLEGLLKIGKRSDA 402 (631)
Q Consensus 324 ~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A 402 (631)
+-..|..++|...+.+..+..+--...|+.|.-.+-..|+.-.|+..|++.... .|+ ...|-.|-..|...+.+++|
T Consensus 194 lka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkl--dP~f~dAYiNLGnV~ke~~~~d~A 271 (966)
T KOG4626|consen 194 LKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKL--DPNFLDAYINLGNVYKEARIFDRA 271 (966)
T ss_pred HHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcC--CCcchHHHhhHHHHHHHHhcchHH
Confidence 444688888888887766654444567888888888888888888888888764 444 45677778888888888888
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhc
Q 036072 403 IKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPD-GLTYNALIKLMKIQ 481 (631)
Q Consensus 403 ~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~ 481 (631)
+..|...... .|+ ...++..+...|-.+|+++.|+..+++..+. .|+ ...|+.|..++-..
T Consensus 272 vs~Y~rAl~l--rpn--------------~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~ 333 (966)
T KOG4626|consen 272 VSCYLRALNL--RPN--------------HAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDK 333 (966)
T ss_pred HHHHHHHHhc--CCc--------------chhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhc
Confidence 8887776553 444 3334444555555666666666666665553 222 34566666666666
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHH
Q 036072 482 KMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD-DNSYTVLIGGLISQDRSGEAYKY 560 (631)
Q Consensus 482 g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~l 560 (631)
|++.+|.+.|++..... .--....+.|...|...|.+++|..+|....+- .|. ...++.|...|-++|++++|+..
T Consensus 334 G~V~ea~~cYnkaL~l~-p~hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~ 410 (966)
T KOG4626|consen 334 GSVTEAVDCYNKALRLC-PNHADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMC 410 (966)
T ss_pred cchHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHH
Confidence 66666666666665542 122445555666666666666666666655543 222 33455555556666666666666
Q ss_pred HHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036072 561 LEEMLEKGMKAPV-LDYNKFAADLSRAGRSYVLDELAQKMR 600 (631)
Q Consensus 561 l~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~l~~~m~ 600 (631)
+++.++ +.|+. ..|+.+...|-..|+.+.|.+.+.+..
T Consensus 411 Ykealr--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI 449 (966)
T KOG4626|consen 411 YKEALR--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAI 449 (966)
T ss_pred HHHHHh--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHH
Confidence 666555 34443 235556666666666666666555544
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.72 E-value=5e-13 Score=153.04 Aligned_cols=353 Identities=10% Similarity=0.016 Sum_probs=239.7
Q ss_pred hHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 036072 227 PAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMN 306 (631)
Q Consensus 227 ~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~ 306 (631)
.|.++|....... +.+...+..+...+...|++++|+..+++..+..+.+.. +..+..++...|+.++|+..++.+.
T Consensus 67 ~A~~~~~~al~~~--P~~~~a~~~la~~l~~~g~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al 143 (765)
T PRK10049 67 NSLTLWQKALSLE--PQNDDYQRGLILTLADAGQYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQAL 143 (765)
T ss_pred HHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 4666666543321 223555666777777777777777777777777666666 7777777777777777777777777
Q ss_pred hCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCCh------hhHHHHHHHHH-----hcCCH---HHHHHHHH
Q 036072 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNL------TTYTVLLGGWC-----RVKNL---MEAGRVWN 372 (631)
Q Consensus 307 ~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~------~~y~~Li~~~~-----~~g~~---~~A~~l~~ 372 (631)
+.. +.+...+..+..++...+..+.|...++.+.. .|+. .....++..+. ..+++ ++|++.++
T Consensus 144 ~~~-P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~--~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~ 220 (765)
T PRK10049 144 PRA-PQTQQYPTEYVQALRNNRLSAPALGAIDDANL--TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYD 220 (765)
T ss_pred HhC-CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC--CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHH
Confidence 764 34555555666666677777777777765543 1111 11122222221 11223 66777777
Q ss_pred HHHHc-CCCCCHH-HH----HHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CcHHHHHHHHHHHhhcCHHHHHHHHHHHhc
Q 036072 373 EMIDK-GFKPDVV-AH----NIMLEGLLKIGKRSDAIKLFEVMKAKGPS-PNVRSYTIMIWKFCKQNAAVYTCLITGFGN 445 (631)
Q Consensus 373 ~m~~~-g~~p~~~-ty----~~li~~~~~~g~~~~A~~ll~~m~~~g~~-p~~~~~~~li~~~~~~~~~~~~~li~~~~~ 445 (631)
.+.+. ...|+.. .+ ...+..+...|++++|+..|+.+.+.+.. |+... ..+...|..
T Consensus 221 ~ll~~~~~~p~~~~~~~~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~a~----------------~~la~~yl~ 284 (765)
T PRK10049 221 ALEALWHDNPDATADYQRARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPWAQ----------------RWVASAYLK 284 (765)
T ss_pred HHHhhcccCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHHHH----------------HHHHHHHHh
Confidence 77753 2223221 11 11134456778899999999998876532 33111 113557888
Q ss_pred cCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-----------CCCC---HHHHHH
Q 036072 446 RRRMDIVYDLLKEMEERGCPP---DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSG-----------FKPT---IHTYNM 508 (631)
Q Consensus 446 ~g~~~~A~~l~~~m~~~g~~p---~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g-----------~~p~---~~t~~~ 508 (631)
.|++++|..+|+.+.+..... ....+..+..++...|++++|.++++.+.+.. -.|+ ...+..
T Consensus 285 ~g~~e~A~~~l~~~l~~~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~ 364 (765)
T PRK10049 285 LHQPEKAQSILTELFYHPETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSL 364 (765)
T ss_pred cCCcHHHHHHHHHHhhcCCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHH
Confidence 899999999999987653211 13456667778899999999999999998752 1123 234567
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 036072 509 IMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588 (631)
Q Consensus 509 Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~ 588 (631)
+...+...|+.++|+++++++...... +...+..+...+...|++++|++.+++.+... +-+...+...+..+.+.|+
T Consensus 365 ~a~~l~~~g~~~eA~~~l~~al~~~P~-n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~-Pd~~~l~~~~a~~al~~~~ 442 (765)
T PRK10049 365 LSQVAKYSNDLPQAEMRARELAYNAPG-NQGLRIDYASVLQARGWPRAAENELKKAEVLE-PRNINLEVEQAWTALDLQE 442 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC-CCChHHHHHHHHHHHHhCC
Confidence 788889999999999999999876433 67888899999999999999999999998864 3345667778889999999
Q ss_pred HHHHHHHHHHHHhcC
Q 036072 589 SYVLDELAQKMRFSG 603 (631)
Q Consensus 589 ~~~A~~l~~~m~~~g 603 (631)
+++|+.+++++....
T Consensus 443 ~~~A~~~~~~ll~~~ 457 (765)
T PRK10049 443 WRQMDVLTDDVVARE 457 (765)
T ss_pred HHHHHHHHHHHHHhC
Confidence 999999999998754
|
|
| >TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70) | Back alignment and domain information |
|---|
Probab=99.71 E-value=5.7e-13 Score=149.58 Aligned_cols=336 Identities=13% Similarity=0.028 Sum_probs=254.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc
Q 036072 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGR 326 (631)
Q Consensus 247 ~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~ 326 (631)
.+...-..+.+.|+++.|+..|++.....+ ++..|..+..+|...|++++|++.++..++.. +.+...|..+..+|..
T Consensus 129 ~~k~~G~~~~~~~~~~~Ai~~y~~al~~~p-~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~-p~~~~a~~~~a~a~~~ 206 (615)
T TIGR00990 129 KLKEKGNKAYRNKDFNKAIKLYSKAIECKP-DPVYYSNRAACHNALGDWEKVVEDTTAALELD-PDYSKALNRRANAYDG 206 (615)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-chHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 445566778889999999999999887654 56788999999999999999999999999875 5567788999999999
Q ss_pred CCChHHHHHHHHHHhc------------------------------ccCCChhhHHHHHH--------------------
Q 036072 327 SKLPKEAQLLFDKLKH------------------------------RFTPNLTTYTVLLG-------------------- 356 (631)
Q Consensus 327 ~g~~~~A~~l~~~m~~------------------------------~~~p~~~~y~~Li~-------------------- 356 (631)
.|++++|..-|..+.. ..+.+...+..+..
T Consensus 207 lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 286 (615)
T TIGR00990 207 LGKYADALLDLTASCIIDGFRNEQSAQAVERLLKKFAESKAKEILETKPENLPSVTFVGNYLQSFRPKPRPAGLEDSNEL 286 (615)
T ss_pred cCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHccCCcchhhhhccccc
Confidence 9999999875543311 00111111111100
Q ss_pred ----------HH------HhcCCHHHHHHHHHHHHHcC-CCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcH
Q 036072 357 ----------GW------CRVKNLMEAGRVWNEMIDKG-FKP-DVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV 418 (631)
Q Consensus 357 ----------~~------~~~g~~~~A~~l~~~m~~~g-~~p-~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~ 418 (631)
.+ ...+++++|.+.|+...+.+ ..| +...|+.+...+...|++++|+..|+...+. .|+
T Consensus 287 ~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l--~P~- 363 (615)
T TIGR00990 287 DEETGNGQLQLGLKSPESKADESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIEL--DPR- 363 (615)
T ss_pred ccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCC-
Confidence 00 11257889999999998765 233 4566788888888999999999999998874 444
Q ss_pred HHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 036072 419 RSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSG 498 (631)
Q Consensus 419 ~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g 498 (631)
....|..+...+...|++++|...|+...+... -+...|..+...+...|++++|...|++..+..
T Consensus 364 -------------~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~ 429 (615)
T TIGR00990 364 -------------VTQSYIKRASMNLELGDPDKAEEDFDKALKLNS-EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD 429 (615)
T ss_pred -------------cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 234455667778889999999999999887643 357888889999999999999999999999864
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH-----
Q 036072 499 FKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPV----- 573 (631)
Q Consensus 499 ~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~----- 573 (631)
+.+...+..+..++.+.|++++|...|++.++... -+...|+.+...+...|++++|.+.|++.....-..+.
T Consensus 430 -P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~P-~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~ 507 (615)
T TIGR00990 430 -PDFIFSHIQLGVTQYKEGSIASSMATFRRCKKNFP-EAPDVYNYYGELLLDQNKFDEAIEKFDTAIELEKETKPMYMNV 507 (615)
T ss_pred -ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCccccccccH
Confidence 34577788889999999999999999999987532 25788999999999999999999999999875321111
Q ss_pred H-HHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 036072 574 L-DYNKFAADLSRAGRSYVLDELAQKMRFSG 603 (631)
Q Consensus 574 ~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g 603 (631)
. .++..+..+...|++++|.+++++.....
T Consensus 508 ~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~ 538 (615)
T TIGR00990 508 LPLINKALALFQWKQDFIEAENLCEKALIID 538 (615)
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 1 12222333445799999999999876544
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.70 E-value=1.6e-13 Score=135.62 Aligned_cols=310 Identities=16% Similarity=0.206 Sum_probs=184.1
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhc-ccCCChhhHHHHHH
Q 036072 278 SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLG 356 (631)
Q Consensus 278 ~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~-~~~p~~~~y~~Li~ 356 (631)
+++++.++|.++|+--..+.|.+++++......+.+..+||.+|.+-.-..+ .+++.+|.. +..||..|+|++++
T Consensus 206 T~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~ 281 (625)
T KOG4422|consen 206 TDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLS 281 (625)
T ss_pred CchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHH
Confidence 3455666666666666666666666666655556666666666554322211 445555543 45666666666666
Q ss_pred HHHhcCCHHH----HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHH----cCCCCcHHHHHHHHHH
Q 036072 357 GWCRVKNLME----AGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRS-DAIKLFEVMKA----KGPSPNVRSYTIMIWK 427 (631)
Q Consensus 357 ~~~~~g~~~~----A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~-~A~~ll~~m~~----~g~~p~~~~~~~li~~ 427 (631)
+..+.|+++. |.+++.+|++.|+.|...+|..+|..+++.++.. .|..++.++.. +.+.|-..+
T Consensus 282 c~akfg~F~~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~------- 354 (625)
T KOG4422|consen 282 CAAKFGKFEDARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPT------- 354 (625)
T ss_pred HHHHhcchHHHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCc-------
Confidence 6666665543 3445556666666666666666666666555542 23333333332 112221111
Q ss_pred HhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CCCCCH---HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 036072 428 FCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEER----GCPPDG---LTYNALIKLMKIQKMPDEAVRIYKEMVRSGFK 500 (631)
Q Consensus 428 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~---~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 500 (631)
+...|...+..|.+..+.+.|.++..-+... -+.|+. .-|..+..+.|.....+.-...|+.|.-.-+-
T Consensus 355 ----d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~ 430 (625)
T KOG4422|consen 355 ----DNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYF 430 (625)
T ss_pred ----hhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceec
Confidence 3344555666677777888777777666532 133332 24556677778888888888888888877777
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-C--------HHH-----HHHH------
Q 036072 501 PTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQD-R--------SGE-----AYKY------ 560 (631)
Q Consensus 501 p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g-~--------~~~-----A~~l------ 560 (631)
|+..+...++++....|.++-.-++|..++..|...+...-.-++..+++.. . +.. |..+
T Consensus 431 p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~ 510 (625)
T KOG4422|consen 431 PHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYES 510 (625)
T ss_pred CCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHh
Confidence 8888888888888888888888888888888775555555444555555433 1 100 1111
Q ss_pred -HHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 036072 561 -LEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGK 604 (631)
Q Consensus 561 -l~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 604 (631)
-.+|.... -+....+.++-.+.+.|..++|.+++.-+..++.
T Consensus 511 ~~~R~r~~~--~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~ 553 (625)
T KOG4422|consen 511 QPIRQRAQD--WPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHN 553 (625)
T ss_pred hHHHHHhcc--CChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCC
Confidence 12233333 3344566777777888888888888888755553
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=3.9e-12 Score=143.47 Aligned_cols=384 Identities=13% Similarity=0.064 Sum_probs=277.7
Q ss_pred HHHHHHHHhhccC-chhHHHHHHHhhcCCCCCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHH
Q 036072 212 NLVVDVLERFRHA-RRPAFRFFCWAGDKPGFAHNS--RTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNA 288 (631)
Q Consensus 212 ~~~~~vl~~~~~~-~~~A~~~f~~~~~~~g~~p~~--~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~ 288 (631)
..+..++..+++. ...|+..|..+.+. .|+. ..+ .++..+...|+.++|+.++++.......+......+...
T Consensus 36 ~~y~~aii~~r~Gd~~~Al~~L~qaL~~---~P~~~~av~-dll~l~~~~G~~~~A~~~~eka~~p~n~~~~~llalA~l 111 (822)
T PRK14574 36 TQYDSLIIRARAGDTAPVLDYLQEESKA---GPLQSGQVD-DWLQIAGWAGRDQEVIDVYERYQSSMNISSRGLASAARA 111 (822)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHhh---CccchhhHH-HHHHHHHHcCCcHHHHHHHHHhccCCCCCHHHHHHHHHH
Confidence 3355555554432 34688888776433 2332 234 888999999999999999999984444455566666789
Q ss_pred HHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHH
Q 036072 289 FAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAG 368 (631)
Q Consensus 289 ~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~ 368 (631)
+...|++++|+++|+.+.+.. +-+...+..++..|...++.++|++.++.+.... |+...+..++..+...++..+|+
T Consensus 112 y~~~gdyd~Aiely~kaL~~d-P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~d-p~~~~~l~layL~~~~~~~~~AL 189 (822)
T PRK14574 112 YRNEKRWDQALALWQSSLKKD-PTNPDLISGMIMTQADAGRGGVVLKQATELAERD-PTVQNYMTLSYLNRATDRNYDAL 189 (822)
T ss_pred HHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccC-cchHHHHHHHHHHHhcchHHHHH
Confidence 999999999999999999986 4557778888899999999999999999998763 34455555555555566776799
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------------------cCCCCc---HHHHHHHH
Q 036072 369 RVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKA--------------------KGPSPN---VRSYTIMI 425 (631)
Q Consensus 369 ~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~--------------------~g~~p~---~~~~~~li 425 (631)
+.++++.+.. +-+...+..++.++.+.|-...|+++..+-.. .+..++ ..-|..+=
T Consensus 190 ~~~ekll~~~-P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~l~~~~~a~~vr~a~~~~~~~~~r~~~~d 268 (822)
T PRK14574 190 QASSEAVRLA-PTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQLERDAAAEQVRMAVLPTRSETERFDIAD 268 (822)
T ss_pred HHHHHHHHhC-CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHHHHHHHHHHHHhhcccccccchhhHHHHH
Confidence 9999999973 33567778888999999988888877664221 111110 00111111
Q ss_pred HHH------hh---cCH-------HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 036072 426 WKF------CK---QNA-------AVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVR 489 (631)
Q Consensus 426 ~~~------~~---~~~-------~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ 489 (631)
.++ .. .++ .+.--.+-++...|++.++++.|+.|...+.+....+-.++..+|...+++++|+.
T Consensus 269 ~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~~~~~~P~y~~~a~adayl~~~~P~kA~~ 348 (822)
T PRK14574 269 KALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEAEGYKMPDYARRWAASAYIDRRLPEKAAP 348 (822)
T ss_pred HHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhhcCCCCCHHHHHHHHHHHHhcCCcHHHHH
Confidence 111 11 011 11123355677889999999999999988877666788889999999999999999
Q ss_pred HHHHHHHCC-----CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----------CCC--H-HHHHHHHHHHHH
Q 036072 490 IYKEMVRSG-----FKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC-----------CPD--D-NSYTVLIGGLIS 550 (631)
Q Consensus 490 l~~~m~~~g-----~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~-----------~p~--~-~t~~~li~~~~~ 550 (631)
+|..+.... ..++......|.-+|...+++++|..+++.+.+... .|| - ..+..++..+..
T Consensus 349 l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~ 428 (822)
T PRK14574 349 ILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVA 428 (822)
T ss_pred HHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHH
Confidence 999987642 123444457888999999999999999999987311 122 2 334456777888
Q ss_pred cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 036072 551 QDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603 (631)
Q Consensus 551 ~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 603 (631)
.|+..+|++.++++.... +-|......+...+...|++..|+++++......
T Consensus 429 ~gdl~~Ae~~le~l~~~a-P~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~ 480 (822)
T PRK14574 429 LNDLPTAQKKLEDLSSTA-PANQNLRIALASIYLARDLPRKAEQELKAVESLA 480 (822)
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhC
Confidence 999999999999998764 6678888899999999999999999998766543
|
|
| >PRK10049 pgaA outer membrane protein PgaA; Provisional | Back alignment and domain information |
|---|
Probab=99.68 E-value=1.6e-12 Score=148.87 Aligned_cols=379 Identities=12% Similarity=0.028 Sum_probs=278.2
Q ss_pred CCCCCHHHHHHHHHhhccCc--hhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHH
Q 036072 206 GINLSHNLVVDVLERFRHAR--RPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFK 283 (631)
Q Consensus 206 ~~~~~~~~~~~vl~~~~~~~--~~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~ 283 (631)
..++++..|...+.-..-.+ ..|++.|..... .-..+...+..+...+.+.|++++|..+|++..+..+.+...+.
T Consensus 10 ~~~~~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~--~~~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~ 87 (765)
T PRK10049 10 KSALSNNQIADWLQIALWAGQDAEVITVYNRYRV--HMQLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQR 87 (765)
T ss_pred ccCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHH
Confidence 34677777776666543333 347777776543 12344667899999999999999999999999988887888888
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCC
Q 036072 284 IAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKN 363 (631)
Q Consensus 284 ~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~ 363 (631)
.+..++...|++++|+..++.+.+.. +.+.. +..+..++...|+.++|...++++.+..+.+...+..+...+...+.
T Consensus 88 ~la~~l~~~g~~~eA~~~l~~~l~~~-P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~P~~~~~~~~la~~l~~~~~ 165 (765)
T PRK10049 88 GLILTLADAGQYDEALVKAKQLVSGA-PDKAN-LLALAYVYKRAGRHWDELRAMTQALPRAPQTQQYPTEYVQALRNNRL 165 (765)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCC
Confidence 99999999999999999999998874 45566 88888889999999999999999988777788888888888889999
Q ss_pred HHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHH-----HcCCH---HHHHHHHHHHHHc-CCCCcHHHHHHHHHHH
Q 036072 364 LMEAGRVWNEMIDKGFKPDV------VAHNIMLEGLL-----KIGKR---SDAIKLFEVMKAK-GPSPNVRSYTIMIWKF 428 (631)
Q Consensus 364 ~~~A~~l~~~m~~~g~~p~~------~ty~~li~~~~-----~~g~~---~~A~~ll~~m~~~-g~~p~~~~~~~li~~~ 428 (631)
.++|++.++.... .|+. .....++.... ..+++ ++|++.++.+.+. ...|+... .+.
T Consensus 166 ~e~Al~~l~~~~~---~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~~~--~~~--- 237 (765)
T PRK10049 166 SAPALGAIDDANL---TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDATA--DYQ--- 237 (765)
T ss_pred hHHHHHHHHhCCC---CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCccch--HHH---
Confidence 9999998876664 2331 11122222222 12234 6788888888754 22333211 000
Q ss_pred hhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---CHH
Q 036072 429 CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP-PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKP---TIH 504 (631)
Q Consensus 429 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~ 504 (631)
......+..+...|++++|...|+.+.+.+.. |+. ....+..+|...|++++|+.+|+++.+..-.. ...
T Consensus 238 -----~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~~~~~P~~-a~~~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~~~~~ 311 (765)
T PRK10049 238 -----RARIDRLGALLARDRYKDVISEYQRLKAEGQIIPPW-AQRWVASAYLKLHQPEKAQSILTELFYHPETIADLSDE 311 (765)
T ss_pred -----HHHHHHHHHHHHhhhHHHHHHHHHHhhccCCCCCHH-HHHHHHHHHHhcCCcHHHHHHHHHHhhcCCCCCCCChH
Confidence 00111122344668999999999999887643 332 22225678999999999999999988643111 134
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----------CCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 036072 505 TYNMIMKSYFQTGNYEMGRKVWDEMIRRGC-----------CPD---DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMK 570 (631)
Q Consensus 505 t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~-----------~p~---~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~ 570 (631)
....|..++...|++++|..+++.+.+... .|+ ...+..+...+...|+.++|+++++++.... +
T Consensus 312 ~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~-P 390 (765)
T PRK10049 312 ELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNA-P 390 (765)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-C
Confidence 566777788999999999999999987531 123 2345667778889999999999999998863 5
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 036072 571 APVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603 (631)
Q Consensus 571 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 603 (631)
-+...+..+...+...|++++|++.+++.....
T Consensus 391 ~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~ 423 (765)
T PRK10049 391 GNQGLRIDYASVLQARGWPRAAENELKKAEVLE 423 (765)
T ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhC
Confidence 567788999999999999999999999987644
|
|
| >KOG4422 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=99.67 E-value=5.3e-12 Score=124.98 Aligned_cols=405 Identities=13% Similarity=0.125 Sum_probs=286.5
Q ss_pred HHHHHHHhcCCCCCHHHHHHHHHh--hccCchh---HHHHHHHhhcCCC-------------------CCCCHHHHHHHH
Q 036072 197 NMEAVLDECGINLSHNLVVDVLER--FRHARRP---AFRFFCWAGDKPG-------------------FAHNSRTYNSMM 252 (631)
Q Consensus 197 ~l~~~l~~~~~~~~~~~~~~vl~~--~~~~~~~---A~~~f~~~~~~~g-------------------~~p~~~~y~~li 252 (631)
-+-..|+..|+++++.+-..+++- |.+...+ -++-|--+. +.| .+.+..+|..||
T Consensus 136 ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~-~~~E~S~~sWK~G~vAdL~~E~~PKT~et~s~mI 214 (625)
T KOG4422|consen 136 ILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMR-NFGEDSTSSWKSGAVADLLFETLPKTDETVSIMI 214 (625)
T ss_pred HHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhcc-ccccccccccccccHHHHHHhhcCCCchhHHHHH
Confidence 356678889999999887776653 2222222 222222221 111 234578999999
Q ss_pred HHHHhcCChhHHHHHHHHHHHC-CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChH
Q 036072 253 SILGRARQFETMVSMLEEMGEK-GLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPK 331 (631)
Q Consensus 253 ~~~~~~g~~~~A~~l~~~m~~~-g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~ 331 (631)
.++|+--+.+.|.+++++..+. |.+..++||.+|.+-.-... .+++.+|....+.||..|+|+++.+..+.|+++
T Consensus 215 ~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~Pnl~TfNalL~c~akfg~F~ 290 (625)
T KOG4422|consen 215 AGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTPNLFTFNALLSCAAKFGKFE 290 (625)
T ss_pred HHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCCchHhHHHHHHHHHHhcchH
Confidence 9999999999999999998765 45899999999977554333 788999999999999999999999999999887
Q ss_pred HH----HHHHHHHhc-ccCCChhhHHHHHHHHHhcCCHHH-HHHHHHHHHH----cCCCC----CHHHHHHHHHHHHHcC
Q 036072 332 EA----QLLFDKLKH-RFTPNLTTYTVLLGGWCRVKNLME-AGRVWNEMID----KGFKP----DVVAHNIMLEGLLKIG 397 (631)
Q Consensus 332 ~A----~~l~~~m~~-~~~p~~~~y~~Li~~~~~~g~~~~-A~~l~~~m~~----~g~~p----~~~ty~~li~~~~~~g 397 (631)
.| .+++.+|++ ++.|...+|..+|..+++.++..+ |..++.++.. +-++| |..-|...|..|.+..
T Consensus 291 ~ar~aalqil~EmKeiGVePsLsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~ 370 (625)
T KOG4422|consen 291 DARKAALQILGEMKEIGVEPSLSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLR 370 (625)
T ss_pred HHHHHHHHHHHHHHHhCCCcchhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhh
Confidence 65 456667776 699999999999999999887644 4555555543 22333 4566788889999999
Q ss_pred CHHHHHHHHHHHHHcC---CCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 036072 398 KRSDAIKLFEVMKAKG---PSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474 (631)
Q Consensus 398 ~~~~A~~ll~~m~~~g---~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 474 (631)
+.+-|.++..-+.... ..++... ...-|..+....|+....+.....|+.|.-.-+-|+..+...+
T Consensus 371 d~~LA~~v~~ll~tg~N~~~ig~~~~-----------~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~ 439 (625)
T KOG4422|consen 371 DLELAYQVHGLLKTGDNWKFIGPDQH-----------RNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHL 439 (625)
T ss_pred hHHHHHHHHHHHHcCCchhhcChHHH-----------HHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHH
Confidence 9999999887665421 1222211 1223556677778888899999999999988888999999999
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CH--------H----H-HHHHHH-------HHHHcC
Q 036072 475 IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG-NY--------E----M-GRKVWD-------EMIRRG 533 (631)
Q Consensus 475 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g-~~--------~----~-A~~~~~-------~m~~~g 533 (631)
+++..-.+.++-.-++|.+++..|...+...-.-++..+++.. .. . + |..+++ +|..
T Consensus 440 lrA~~v~~~~e~ipRiw~D~~~~ght~r~~l~eeil~~L~~~k~hp~tp~r~Ql~~~~ak~aad~~e~~e~~~~R~r~-- 517 (625)
T KOG4422|consen 440 LRALDVANRLEVIPRIWKDSKEYGHTFRSDLREEILMLLARDKLHPLTPEREQLQVAFAKCAADIKEAYESQPIRQRA-- 517 (625)
T ss_pred HHHHhhcCcchhHHHHHHHHHHhhhhhhHHHHHHHHHHHhcCCCCCCChHHHHHHHHHHHHHHHHHHHHHhhHHHHHh--
Confidence 9999999999999999999998886555555444455555433 11 0 0 111111 2222
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC----CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHH
Q 036072 534 CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM----KAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSN 609 (631)
Q Consensus 534 ~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~----~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~ 609 (631)
........+...-.+.+.|..++|.++|.-+.+.+- .|......-+++.-.+....-.|..+++-|-..+......
T Consensus 518 ~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~n~~~~E~ 597 (625)
T KOG4422|consen 518 QDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAFNLPICEG 597 (625)
T ss_pred ccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCchhhhH
Confidence 233556667777778999999999999999966542 2333334466677778888999999999887666544443
Q ss_pred HHHHHHHhhh
Q 036072 610 VLARWAETTK 619 (631)
Q Consensus 610 ~l~~~~~~~k 619 (631)
.-.+.-+...
T Consensus 598 La~RI~e~f~ 607 (625)
T KOG4422|consen 598 LAQRIMEDFA 607 (625)
T ss_pred HHHHHHHhcC
Confidence 3334433333
|
|
| >KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=99.65 E-value=2.8e-13 Score=139.41 Aligned_cols=286 Identities=16% Similarity=0.111 Sum_probs=174.6
Q ss_pred cCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHH
Q 036072 258 ARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLF 337 (631)
Q Consensus 258 ~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~ 337 (631)
.|+.++|...|.+..+..+.-.-+|+.|...+-.+|+...|++-|++..+.. +--...|-.|...|...+.++.|...+
T Consensus 197 ~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkld-P~f~dAYiNLGnV~ke~~~~d~Avs~Y 275 (966)
T KOG4626|consen 197 EGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLD-PNFLDAYINLGNVYKEARIFDRAVSCY 275 (966)
T ss_pred hcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhcCC-CcchHHHhhHHHHHHHHhcchHHHHHH
Confidence 3455555555544444433222345555555556666666666666666543 223455666666666666666666666
Q ss_pred HHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 036072 338 DKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD-VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416 (631)
Q Consensus 338 ~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p 416 (631)
......-+.....|..|...|...|.++.|++.|++..+. .|+ ...|+.|..++-..|++.+|...|...... .|
T Consensus 276 ~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~--~P~F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l--~p 351 (966)
T KOG4626|consen 276 LRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL--QPNFPDAYNNLANALKDKGSVTEAVDCYNKALRL--CP 351 (966)
T ss_pred HHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhc--CCCchHHHhHHHHHHHhccchHHHHHHHHHHHHh--CC
Confidence 6654433444556666666666667777777777666653 333 456677777777777777777766666542 22
Q ss_pred cHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 036072 417 NVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPD-GLTYNALIKLMKIQKMPDEAVRIYKEMV 495 (631)
Q Consensus 417 ~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~l~~~m~ 495 (631)
+ .+.+.+.|...|...|.+++|..+|....+- .|. ...++.|...|-+.|++++|+..|++.+
T Consensus 352 ~--------------hadam~NLgni~~E~~~~e~A~~ly~~al~v--~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal 415 (966)
T KOG4626|consen 352 N--------------HADAMNNLGNIYREQGKIEEATRLYLKALEV--FPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL 415 (966)
T ss_pred c--------------cHHHHHHHHHHHHHhccchHHHHHHHHHHhh--ChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH
Confidence 2 4456667777777777777777777666553 222 3456666677777777777777777766
Q ss_pred HCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 036072 496 RSGFKPT-IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567 (631)
Q Consensus 496 ~~g~~p~-~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~ 567 (631)
+ ++|+ ...|+.+...|-..|+++.|.+.+.+.+..+.. =...++.|...|-..|++.+|+.-+++.+..
T Consensus 416 r--I~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt-~AeAhsNLasi~kDsGni~~AI~sY~~aLkl 485 (966)
T KOG4626|consen 416 R--IKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPT-FAEAHSNLASIYKDSGNIPEAIQSYRTALKL 485 (966)
T ss_pred h--cCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcH-HHHHHhhHHHHhhccCCcHHHHHHHHHHHcc
Confidence 5 3454 456667777777777777777777766654211 2445666677777777777777777776653
|
|
| >PRK14574 hmsH outer membrane protein; Provisional | Back alignment and domain information |
|---|
Probab=99.58 E-value=1.8e-10 Score=130.08 Aligned_cols=357 Identities=12% Similarity=0.045 Sum_probs=260.7
Q ss_pred hhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 036072 226 RPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELM 305 (631)
Q Consensus 226 ~~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m 305 (631)
..|+..++... .+ -..+......+...+...|++++|+++|+++.+..+.++..+..++..+...++.++|++.++.+
T Consensus 85 ~~A~~~~eka~-~p-~n~~~~~llalA~ly~~~gdyd~Aiely~kaL~~dP~n~~~l~gLa~~y~~~~q~~eAl~~l~~l 162 (822)
T PRK14574 85 QEVIDVYERYQ-SS-MNISSRGLASAARAYRNEKRWDQALALWQSSLKKDPTNPDLISGMIMTQADAGRGGVVLKQATEL 162 (822)
T ss_pred HHHHHHHHHhc-cC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHhhcCCHHHHHHHHHHh
Confidence 34888777654 11 11223344444668888899999999999999999988888888899999999999999999999
Q ss_pred HhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--------
Q 036072 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK-------- 377 (631)
Q Consensus 306 ~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~-------- 377 (631)
... .|+...+..++..+...++..+|.+.++++.+..+.+...+..++....+.|-...|+++..+-.+.
T Consensus 163 ~~~--dp~~~~~l~layL~~~~~~~~~AL~~~ekll~~~P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~f~~~~~~~ 240 (822)
T PRK14574 163 AER--DPTVQNYMTLSYLNRATDRNYDALQASSEAVRLAPTSEEVLKNHLEILQRNRIVEPALRLAKENPNLVSAEHYRQ 240 (822)
T ss_pred ccc--CcchHHHHHHHHHHHhcchHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccccCHHHHHH
Confidence 886 4566666555555555666766999999998887778888888888888888776666655432210
Q ss_pred -----------------------------------------CCCCCH-H----HHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 378 -----------------------------------------GFKPDV-V----AHNIMLEGLLKIGKRSDAIKLFEVMKA 411 (631)
Q Consensus 378 -----------------------------------------g~~p~~-~----ty~~li~~~~~~g~~~~A~~ll~~m~~ 411 (631)
+-.|.. . ..-=.+-++...|++.++++.|+.|..
T Consensus 241 l~~~~~a~~vr~a~~~~~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~aL~~r~r~~~vi~~y~~l~~ 320 (822)
T PRK14574 241 LERDAAAEQVRMAVLPTRSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGALLVRHQTADLIKEYEAMEA 320 (822)
T ss_pred HHHHHHHHHHhhcccccccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHHHHHhhhHHHHHHHHHHhhh
Confidence 011111 0 011123344455666666666666665
Q ss_pred cCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC-----CCCCHHHHHHHHHHHHhcCChhH
Q 036072 412 KGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERG-----CPPDGLTYNALIKLMKIQKMPDE 486 (631)
Q Consensus 412 ~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-----~~p~~~t~~~li~~~~~~g~~~~ 486 (631)
.|... ...+-.++..+|...+++++|..+++.+.... ..++......|.-++...+++++
T Consensus 321 ~~~~~---------------P~y~~~a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~ 385 (822)
T PRK14574 321 EGYKM---------------PDYARRWAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDK 385 (822)
T ss_pred cCCCC---------------CHHHHHHHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHH
Confidence 54321 22344567889999999999999999986642 23344446789999999999999
Q ss_pred HHHHHHHHHHCCC-------------CCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 036072 487 AVRIYKEMVRSGF-------------KPTI-HTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQD 552 (631)
Q Consensus 487 A~~l~~~m~~~g~-------------~p~~-~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 552 (631)
|..+++++.+..- .||- ..+..++..+...|+..+|++.++++...... |......+...+...|
T Consensus 386 A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~aP~-n~~l~~~~A~v~~~Rg 464 (822)
T PRK14574 386 AYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSSTAPA-NQNLRIALASIYLARD 464 (822)
T ss_pred HHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcC
Confidence 9999999997311 1222 23455677889999999999999999876544 8899999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 036072 553 RSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603 (631)
Q Consensus 553 ~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 603 (631)
.+.+|.+.++.+.... +-+..+....+.++...|++++|.++.+++.+..
T Consensus 465 ~p~~A~~~~k~a~~l~-P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~ 514 (822)
T PRK14574 465 LPRKAEQELKAVESLA-PRSLILERAQAETAMALQEWHQMELLTDDVISRS 514 (822)
T ss_pred CHHHHHHHHHHHhhhC-CccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhC
Confidence 9999999997776652 4456667788899999999999999998876543
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.52 E-value=1.4e-10 Score=122.78 Aligned_cols=282 Identities=10% Similarity=0.080 Sum_probs=147.1
Q ss_pred cCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHH--HHHHHHHcCCChHHHHH
Q 036072 258 ARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTIN--CLLENLGRSKLPKEAQL 335 (631)
Q Consensus 258 ~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~--~Ll~~~~~~g~~~~A~~ 335 (631)
.|+++.|.+.+....+....+.-.|.....+....|+++.|.+.+..+.+. .|+...+. .....+...|+++.|..
T Consensus 97 eGd~~~A~k~l~~~~~~~~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~ 174 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHAEQPVVNYLLAAEAAQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARH 174 (398)
T ss_pred CCCHHHHHHHHHHHHhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHH
Confidence 578888887776655442222223333344446777788888888777664 34433222 33556677777777777
Q ss_pred HHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH-------HHHHHHHHHHHcCCHHHHHHHHHH
Q 036072 336 LFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVV-------AHNIMLEGLLKIGKRSDAIKLFEV 408 (631)
Q Consensus 336 l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-------ty~~li~~~~~~g~~~~A~~ll~~ 408 (631)
.++.+.+..+-+...+..+...|.+.|++++|.+++..+.+.+..++.. +|..++.......+.+...++++.
T Consensus 175 ~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~ 254 (398)
T PRK10747 175 GVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKN 254 (398)
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHh
Confidence 7777776666677777777777777777777777777777765442221 122222222222223333333332
Q ss_pred HHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 036072 409 MKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAV 488 (631)
Q Consensus 409 m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~ 488 (631)
+.+. .| .++.....+...+...|+.++|.+++++..+. .++... .++.+....++.++++
T Consensus 255 lp~~--~~--------------~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al 314 (398)
T PRK10747 255 QSRK--TR--------------HQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLE 314 (398)
T ss_pred CCHH--Hh--------------CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHH
Confidence 2111 01 13333344445555555555555555554442 222211 1122222335555555
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 036072 489 RIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564 (631)
Q Consensus 489 ~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m 564 (631)
+..+...+.. +-|...+..+...|...+++++|.+.|+.+.+. .|+..+|..|...+.+.|+.++|.+++++-
T Consensus 315 ~~~e~~lk~~-P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 315 KVLRQQIKQH-GDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHHHHHHhhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5555555432 223344445555555555555555555555543 345555555555555555555555555544
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.51 E-value=1.5e-10 Score=124.83 Aligned_cols=338 Identities=12% Similarity=0.051 Sum_probs=253.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 036072 246 RTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG 325 (631)
Q Consensus 246 ~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~ 325 (631)
...-.....+...|++++|..++.+..+..+.....|.+|...|-..|+.+++...+-..-... +-|...|..+.+...
T Consensus 140 ~~ll~eAN~lfarg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~ 218 (895)
T KOG2076|consen 140 RQLLGEANNLFARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSE 218 (895)
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 3333344444455999999999999999999999999999999999999999998887776665 667799999999999
Q ss_pred cCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH----HHHHHHHHHcCCHHH
Q 036072 326 RSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH----NIMLEGLLKIGKRSD 401 (631)
Q Consensus 326 ~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty----~~li~~~~~~g~~~~ 401 (631)
+.|.++.|.-+|.+..+..+++...+---+..|-+.|+...|.+-|.++.......|..-+ -.+++.+...++.+.
T Consensus 219 ~~~~i~qA~~cy~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~ 298 (895)
T KOG2076|consen 219 QLGNINQARYCYSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERER 298 (895)
T ss_pred hcccHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHH
Confidence 9999999999999999888888888888889999999999999999999986332232222 334566777888899
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC------------------
Q 036072 402 AIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERG------------------ 463 (631)
Q Consensus 402 A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g------------------ 463 (631)
|.+.++.....+..- . +...++.++..|.+...++.|......+....
T Consensus 299 a~~~le~~~s~~~~~--~------------~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~ 364 (895)
T KOG2076|consen 299 AAKALEGALSKEKDE--A------------SLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEP 364 (895)
T ss_pred HHHHHHHHHhhcccc--c------------cccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccc
Confidence 999998877632110 0 22334455666666677777777777766521
Q ss_pred ---------CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036072 464 ---------CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKP--TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532 (631)
Q Consensus 464 ---------~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~ 532 (631)
+.++... .-++-++......+....+.....+..+.| +...|.-+..+|...|++.+|..+|..+...
T Consensus 365 ~~~~~~~~~~s~~l~v-~rl~icL~~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~ 443 (895)
T KOG2076|consen 365 NALCEVGKELSYDLRV-IRLMICLVHLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNR 443 (895)
T ss_pred cccccCCCCCCccchh-HhHhhhhhcccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcC
Confidence 1222222 122233445555556666666666665333 4677888899999999999999999999876
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036072 533 GCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600 (631)
Q Consensus 533 g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 600 (631)
...-+...|--+..+|...|..++|.+.++..+... +-+...-.+|...+.+.|+.++|.+.++.|.
T Consensus 444 ~~~~~~~vw~~~a~c~~~l~e~e~A~e~y~kvl~~~-p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~ 510 (895)
T KOG2076|consen 444 EGYQNAFVWYKLARCYMELGEYEEAIEFYEKVLILA-PDNLDARITLASLYQQLGNHEKALETLEQII 510 (895)
T ss_pred ccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCchhhhhhHHHHHHhcCCHHHHHHHHhccc
Confidence 555577889899999999999999999999988753 2234445577888889999999999988854
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.50 E-value=2.3e-10 Score=121.76 Aligned_cols=135 Identities=10% Similarity=0.013 Sum_probs=90.6
Q ss_pred HHHHHHHHHHH--hcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 036072 246 RTYNSMMSILG--RARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLEN 323 (631)
Q Consensus 246 ~~y~~li~~~~--~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~ 323 (631)
..+..+.+++. ..|+++.|.+.+.+..+....+...+-....+....|+.+.|.+.+....+..-.+...........
T Consensus 83 k~~~~~~~glla~~~g~~~~A~~~l~~~~~~~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l 162 (409)
T TIGR00540 83 KAQKQTEEALLKLAEGDYAKAEKLIAKNADHAAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRI 162 (409)
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHhhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHH
Confidence 34445555543 4688888888887766654434444555566677778888888888777654312222233334666
Q ss_pred HHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 036072 324 LGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFK 380 (631)
Q Consensus 324 ~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~ 380 (631)
+...|+++.|...++.+.+..+-+..++..+...+...|++++|.+++..+.+.++.
T Consensus 163 ~l~~~~~~~Al~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~ 219 (409)
T TIGR00540 163 LLAQNELHAARHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLF 219 (409)
T ss_pred HHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCC
Confidence 777788888888888877766667777777788888888888888888888777543
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.48 E-value=1.8e-09 Score=124.67 Aligned_cols=320 Identities=12% Similarity=0.061 Sum_probs=220.6
Q ss_pred CChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhC-C-CCcCHHHHHHHHHHHHcCCC---hHHH
Q 036072 259 RQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKY-K-FKAGVDTINCLLENLGRSKL---PKEA 333 (631)
Q Consensus 259 g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~-g-~~~~~~~~~~Ll~~~~~~g~---~~~A 333 (631)
+...++...++.|....+-+.....-+.-.....|+.++|.++|+..... + ...+....+.|+..|.+.+. ..++
T Consensus 356 ~~~~~~~~~~~~~y~~~~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~ 435 (987)
T PRK09782 356 RNKAEALRLARLLYQQEPANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKV 435 (987)
T ss_pred CchhHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHH
Confidence 45556666666666655545555555555566778888888888777662 1 12344555567777766655 2233
Q ss_pred HHH----------------------HHHHhc---ccCC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 036072 334 QLL----------------------FDKLKH---RFTP--NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH 386 (631)
Q Consensus 334 ~~l----------------------~~~m~~---~~~p--~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty 386 (631)
..+ .+.... ..++ +...|..+..++.. ++.++|...|.+.... .|+....
T Consensus 436 ~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~ 512 (987)
T PRK09782 436 AILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQH 512 (987)
T ss_pred HHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHH
Confidence 222 111111 1234 56677888777776 7888888877777764 3665544
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC
Q 036072 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPP 466 (631)
Q Consensus 387 ~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 466 (631)
..+...+...|++++|...|+.+... .|+.. .+..+...+.+.|+.++|...++...+... .
T Consensus 513 L~lA~al~~~Gr~eeAi~~~rka~~~--~p~~~---------------a~~~la~all~~Gd~~eA~~~l~qAL~l~P-~ 574 (987)
T PRK09782 513 RAVAYQAYQVEDYATALAAWQKISLH--DMSNE---------------DLLAAANTAQAAGNGAARDRWLQQAEQRGL-G 574 (987)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHhcc--CCCcH---------------HHHHHHHHHHHCCCHHHHHHHHHHHHhcCC-c
Confidence 44455556889999999999887553 22221 123345667778899999999988887642 2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036072 467 DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIG 546 (631)
Q Consensus 467 ~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 546 (631)
+...+..+...+...|++++|...+++..+. .|+...+..+..++.+.|++++|...+++..+.... +...++.+..
T Consensus 575 ~~~l~~~La~~l~~~Gr~~eAl~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd-~~~a~~nLG~ 651 (987)
T PRK09782 575 DNALYWWLHAQRYIPGQPELALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELEPN-NSNYQAALGY 651 (987)
T ss_pred cHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 3333334444455669999999999988875 467788888888899999999999999998886433 6677888888
Q ss_pred HHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 036072 547 GLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603 (631)
Q Consensus 547 ~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 603 (631)
++...|+.++|++.+++..+.. +-+...+..+..++...|++++|+..+++.....
T Consensus 652 aL~~~G~~eeAi~~l~~AL~l~-P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 652 ALWDSGDIAQSREMLERAHKGL-PDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 8889999999999999888764 3456778889999999999999999998886544
|
|
| >PRK10747 putative protoheme IX biogenesis protein; Provisional | Back alignment and domain information |
|---|
Probab=99.47 E-value=3.9e-10 Score=119.43 Aligned_cols=288 Identities=10% Similarity=0.030 Sum_probs=218.9
Q ss_pred ccCHHHHHHHHHHHHhCCCCcCHHH-HHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHH--HHHHHHHhcCCHHHHH
Q 036072 292 AKERKKAVAIFELMNKYKFKAGVDT-INCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYT--VLLGGWCRVKNLMEAG 368 (631)
Q Consensus 292 ~g~~~~A~~v~~~m~~~g~~~~~~~-~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~--~Li~~~~~~g~~~~A~ 368 (631)
.|++++|.+.+....+.. .++.. |.....+..+.|+.+.|...+.++.+. .|+...+. .....+...|+++.|.
T Consensus 97 eGd~~~A~k~l~~~~~~~--~~p~l~~llaA~aA~~~g~~~~A~~~l~~A~~~-~~~~~~~~~l~~a~l~l~~g~~~~Al 173 (398)
T PRK10747 97 EGDYQQVEKLMTRNADHA--EQPVVNYLLAAEAAQQRGDEARANQHLERAAEL-ADNDQLPVEITRVRIQLARNENHAAR 173 (398)
T ss_pred CCCHHHHHHHHHHHHhcc--cchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc-CCcchHHHHHHHHHHHHHCCCHHHHH
Confidence 699999998888766642 22333 333345558899999999999999764 33433222 3367889999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCC
Q 036072 369 RVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRR 448 (631)
Q Consensus 369 ~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~ 448 (631)
..++.+.+.. +-+...+..+...|.+.|++++|.+++..+.+.+..++. ....+ -..+|..++.......+
T Consensus 174 ~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l-------~~~a~~~l~~~~~~~~~ 244 (398)
T PRK10747 174 HGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAML-------EQQAWIGLMDQAMADQG 244 (398)
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHH-------HHHHHHHHHHHHHHhcC
Confidence 9999999875 336778889999999999999999999999988665322 22211 01122233333344456
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 036072 449 MDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDE 528 (631)
Q Consensus 449 ~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~ 528 (631)
.+...++++.+.+. .+.+......+..++...|+.++|.+++++..+. .++... .++.+....++.+++.+..+.
T Consensus 245 ~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~l~~--~~~~~l--~~l~~~l~~~~~~~al~~~e~ 319 (398)
T PRK10747 245 SEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQQIILDGLKR--QYDERL--VLLIPRLKTNNPEQLEKVLRQ 319 (398)
T ss_pred HHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHH--HHHHhhccCCChHHHHHHHHH
Confidence 66677777766443 3457788889999999999999999999999884 455532 233344456999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036072 529 MIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599 (631)
Q Consensus 529 m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 599 (631)
..+.... |...+..+...|.+.+++++|.+.|+.+.+. .|+..+|..+..++.+.|+.++|.+++++-
T Consensus 320 ~lk~~P~-~~~l~l~lgrl~~~~~~~~~A~~~le~al~~--~P~~~~~~~La~~~~~~g~~~~A~~~~~~~ 387 (398)
T PRK10747 320 QIKQHGD-TPLLWSTLGQLLMKHGEWQEASLAFRAALKQ--RPDAYDYAWLADALDRLHKPEEAAAMRRDG 387 (398)
T ss_pred HHhhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 9987443 6778889999999999999999999999985 699999999999999999999999999865
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.46 E-value=5.1e-13 Score=134.88 Aligned_cols=256 Identities=18% Similarity=0.207 Sum_probs=69.1
Q ss_pred HHHHHcCCChHHHHHHHHHHhccc--CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 036072 321 LENLGRSKLPKEAQLLFDKLKHRF--TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGK 398 (631)
Q Consensus 321 l~~~~~~g~~~~A~~l~~~m~~~~--~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~ 398 (631)
...+.+.|++++|.++++...... +.|...|..+...+...+++++|.+.++++...+.. +...+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccc-ccccc
Confidence 344444455555555553322211 222333333344444445555555555555443222 33334444444 34455
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHH
Q 036072 399 RSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERG-CPPDGLTYNALIKL 477 (631)
Q Consensus 399 ~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~li~~ 477 (631)
+++|.+++....+.. ++. ..+..++..+.+.++++++.++++.+.... .+.+...|..+...
T Consensus 93 ~~~A~~~~~~~~~~~--~~~---------------~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~ 155 (280)
T PF13429_consen 93 PEEALKLAEKAYERD--GDP---------------RYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEI 155 (280)
T ss_dssp ------------------------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHH
T ss_pred ccccccccccccccc--ccc---------------chhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHH
Confidence 555555544433221 111 112223333444455555555555544321 23344455555555
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 036072 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEA 557 (631)
Q Consensus 478 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 557 (631)
+.+.|+.++|++++++..+.. +-|....+.++..+...|+.+++.++++...+.. ..|...+..+..+|...|+.++|
T Consensus 156 ~~~~G~~~~A~~~~~~al~~~-P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~A 233 (280)
T PF13429_consen 156 YEQLGDPDKALRDYRKALELD-PDDPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEEA 233 (280)
T ss_dssp HHHCCHHHHHHHHHHHHHHH--TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHHH
T ss_pred HHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhccccccccc
Confidence 555666666666666555542 1134455555555555565555555555554432 22344455555555566666666
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036072 558 YKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQK 598 (631)
Q Consensus 558 ~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 598 (631)
+.++++..... +.|+.....+..++...|+.++|.++.++
T Consensus 234 l~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~ 273 (280)
T PF13429_consen 234 LEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQ 273 (280)
T ss_dssp HHHHHHHHHHS-TT-HHHHHHHHHHHT--------------
T ss_pred ccccccccccc-ccccccccccccccccccccccccccccc
Confidence 66666655532 33555555566666666666666555544
|
|
| >PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B | Back alignment and domain information |
|---|
Probab=99.44 E-value=7.8e-13 Score=133.54 Aligned_cols=260 Identities=14% Similarity=0.110 Sum_probs=80.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCC--CCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcC
Q 036072 250 SMMSILGRARQFETMVSMLEEMGEKG--LLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS 327 (631)
Q Consensus 250 ~li~~~~~~g~~~~A~~l~~~m~~~g--~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~ 327 (631)
.+...+.+.|++++|++++++..... ..+...|..+...+...++++.|++.++.+.+.+ +-+...+..++.. ...
T Consensus 13 ~~A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~-~~~~~~~~~l~~l-~~~ 90 (280)
T PF13429_consen 13 RLARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASD-KANPQDYERLIQL-LQD 90 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-ccccccccccccc-ccc
Confidence 34666677778888888775543333 3344555556666666777777777777777665 2355556666665 567
Q ss_pred CChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 036072 328 KLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKG-FKPDVVAHNIMLEGLLKIGKRSDAIKLF 406 (631)
Q Consensus 328 g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~ty~~li~~~~~~g~~~~A~~ll 406 (631)
+++++|.+++...-+.. ++...+..++..+.+.++++++.++++.+.... ...+...|..+...+.+.|+.++|++.+
T Consensus 91 ~~~~~A~~~~~~~~~~~-~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~ 169 (280)
T PF13429_consen 91 GDPEEALKLAEKAYERD-GDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDY 169 (280)
T ss_dssp ----------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHH
T ss_pred ccccccccccccccccc-cccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 77777777766543332 355556666777777777777777777765432 3345566666667777777777777777
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH
Q 036072 407 EVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDE 486 (631)
Q Consensus 407 ~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 486 (631)
++..+. .|+ +..+.+.++..+...|+.+++.+++....+.. +.|...+..+..+|...|+.++
T Consensus 170 ~~al~~--~P~--------------~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~-~~~~~~~~~la~~~~~lg~~~~ 232 (280)
T PF13429_consen 170 RKALEL--DPD--------------DPDARNALAWLLIDMGDYDEAREALKRLLKAA-PDDPDLWDALAAAYLQLGRYEE 232 (280)
T ss_dssp HHHHHH---TT---------------HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH--HTSCCHCHHHHHHHHHHT-HHH
T ss_pred HHHHHc--CCC--------------CHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-cCHHHHHHHHHHHhcccccccc
Confidence 777664 333 33334445555566666666666666655442 2344455566666666666666
Q ss_pred HHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036072 487 AVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMI 530 (631)
Q Consensus 487 A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~ 530 (631)
|+.+|++..+.. +.|......+..++...|+.++|.++..+..
T Consensus 233 Al~~~~~~~~~~-p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~ 275 (280)
T PF13429_consen 233 ALEYLEKALKLN-PDDPLWLLAYADALEQAGRKDEALRLRRQAL 275 (280)
T ss_dssp HHHHHHHHHHHS-TT-HHHHHHHHHHHT----------------
T ss_pred cccccccccccc-ccccccccccccccccccccccccccccccc
Confidence 666666666542 3355556666666666666666666655543
|
|
| >PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional | Back alignment and domain information |
|---|
Probab=99.44 E-value=9e-09 Score=118.92 Aligned_cols=333 Identities=11% Similarity=0.017 Sum_probs=248.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCCHHHHHHHHHHHHHccC---HHHHHHH----------------
Q 036072 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEK---GLLSMETFKIAMNAFAAAKE---RKKAVAI---------------- 301 (631)
Q Consensus 244 ~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~---g~~~~~~~~~li~~~~~~g~---~~~A~~v---------------- 301 (631)
+.....-+--...+.|+.++|.++|+..... +-.+.....-++..|.+.+. ..++..+
T Consensus 375 ~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 454 (987)
T PRK09782 375 NLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSKPLPLAEQRQWQSQL 454 (987)
T ss_pred CHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhccccccchhHHHHhhh
Confidence 3455555555677889999999999998762 22456666678888887766 3333222
Q ss_pred ------HHHHHhC-CC-Cc--CHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 036072 302 ------FELMNKY-KF-KA--GVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVW 371 (631)
Q Consensus 302 ------~~~m~~~-g~-~~--~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~ 371 (631)
.+..... +. ++ +...|..+..++.. ++.++|...+.+..... |+......+...+...|++++|...|
T Consensus 455 ~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~~-Pd~~~~L~lA~al~~~Gr~eeAi~~~ 532 (987)
T PRK09782 455 PGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQRQ-PDAWQHRAVAYQAYQVEDYATALAAW 532 (987)
T ss_pred hhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHhC-CchHHHHHHHHHHHHCCCHHHHHHHH
Confidence 1122111 11 33 67788888888876 78888999888876543 44433444455557899999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHH
Q 036072 372 NEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDI 451 (631)
Q Consensus 372 ~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~ 451 (631)
+++... .|+...+..+...+.+.|+.++|...++...+.. |+.. ..+..+.......|++++
T Consensus 533 rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~--P~~~--------------~l~~~La~~l~~~Gr~~e 594 (987)
T PRK09782 533 QKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRG--LGDN--------------ALYWWLHAQRYIPGQPEL 594 (987)
T ss_pred HHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CccH--------------HHHHHHHHHHHhCCCHHH
Confidence 998664 4555566777888999999999999999998753 4321 112223334446699999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 452 VYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIR 531 (631)
Q Consensus 452 A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~ 531 (631)
|...+++..+. .|+...|..+..++.+.|+.++|+..|++..+.. +-+...++.+..++...|++++|+..+++..+
T Consensus 595 Al~~~~~AL~l--~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~-Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~AL~ 671 (987)
T PRK09782 595 ALNDLTRSLNI--APSANAYVARATIYRQRHNVPAAVSDLRAALELE-PNNSNYQAALGYALWDSGDIAQSREMLERAHK 671 (987)
T ss_pred HHHHHHHHHHh--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 99999999875 4578889999999999999999999999999874 44577888888999999999999999999998
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036072 532 RGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRF 601 (631)
Q Consensus 532 ~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 601 (631)
.... +...+..+..++...|++++|...+++..+.. +-+..+.........+..+++.|.+-+++--.
T Consensus 672 l~P~-~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~-P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~ 739 (987)
T PRK09782 672 GLPD-DPALIRQLAYVNQRLDDMAATQHYARLVIDDI-DNQALITPLTPEQNQQRFNFRRLHEEVGRRWT 739 (987)
T ss_pred hCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCchhhhhhhHHHHHHHHHHHHHHHHHHHhh
Confidence 6443 67889999999999999999999999999864 22335566777777788888888877665433
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.44 E-value=5e-10 Score=107.74 Aligned_cols=301 Identities=14% Similarity=0.095 Sum_probs=216.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCc---CHHHHHHHHH
Q 036072 246 RTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKA---GVDTINCLLE 322 (631)
Q Consensus 246 ~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~---~~~~~~~Ll~ 322 (631)
..|-.=++.+. .++.++|.++|-+|.+...-+.++.-+|.+.|...|..+.|+.+...+.+..--+ .......|..
T Consensus 37 r~Yv~GlNfLL-s~Q~dKAvdlF~e~l~~d~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~ 115 (389)
T COG2956 37 RDYVKGLNFLL-SNQPDKAVDLFLEMLQEDPETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGR 115 (389)
T ss_pred HHHHhHHHHHh-hcCcchHHHHHHHHHhcCchhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHH
Confidence 34444444443 4678999999999999777778888899999999999999999999988752111 1234455677
Q ss_pred HHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCC
Q 036072 323 NLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDV----VAHNIMLEGLLKIGK 398 (631)
Q Consensus 323 ~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~ty~~li~~~~~~g~ 398 (631)
-|...|-++.|+.+|..+.+...--......|+..|-...+|++|+++-+++.+.|-++.. .-|.-+...+....+
T Consensus 116 Dym~aGl~DRAE~~f~~L~de~efa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~~~~~~~ 195 (389)
T COG2956 116 DYMAAGLLDRAEDIFNQLVDEGEFAEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQALASSD 195 (389)
T ss_pred HHHHhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHHHhhhhh
Confidence 7889999999999999987643334556788899999999999999999998887655432 233444445555678
Q ss_pred HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 036072 399 RSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLM 478 (631)
Q Consensus 399 ~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~ 478 (631)
++.|..++.+..+. .|+.+--+++ +.+.+...|+++.|.+.++...+.+..--..+...|..+|
T Consensus 196 ~d~A~~~l~kAlqa--~~~cvRAsi~--------------lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y 259 (389)
T COG2956 196 VDRARELLKKALQA--DKKCVRASII--------------LGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECY 259 (389)
T ss_pred HHHHHHHHHHHHhh--Cccceehhhh--------------hhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHH
Confidence 88999998888765 3333222222 4566777899999999999988876655567788888899
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---cCCHH
Q 036072 479 KIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLIS---QDRSG 555 (631)
Q Consensus 479 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~---~g~~~ 555 (631)
...|+.++....+..+.+... ....-..+-+.-....-.+.|..++.+-+.. +|+...+.-||..-.. .|...
T Consensus 260 ~~lg~~~~~~~fL~~~~~~~~--g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k 335 (389)
T COG2956 260 AQLGKPAEGLNFLRRAMETNT--GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAK 335 (389)
T ss_pred HHhCCHHHHHHHHHHHHHccC--CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchh
Confidence 999999999999988887643 3333444444444445556666655554443 5888888888886653 45567
Q ss_pred HHHHHHHHHHHC
Q 036072 556 EAYKYLEEMLEK 567 (631)
Q Consensus 556 ~A~~ll~~m~~~ 567 (631)
+-+.+++.|+..
T Consensus 336 ~sL~~lr~mvge 347 (389)
T COG2956 336 ESLDLLRDMVGE 347 (389)
T ss_pred hhHHHHHHHHHH
Confidence 777778888754
|
|
| >TIGR00540 hemY_coli hemY protein | Back alignment and domain information |
|---|
Probab=99.42 E-value=9.1e-10 Score=117.20 Aligned_cols=292 Identities=11% Similarity=-0.037 Sum_probs=210.9
Q ss_pred HHccCHHHHHHHHHHHHhCCCCcCH-HHHHHHHHHHHcCCChHHHHHHHHHHhcccCCCh-hhHHHHHHHHHhcCCHHHH
Q 036072 290 AAAKERKKAVAIFELMNKYKFKAGV-DTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNL-TTYTVLLGGWCRVKNLMEA 367 (631)
Q Consensus 290 ~~~g~~~~A~~v~~~m~~~g~~~~~-~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~-~~y~~Li~~~~~~g~~~~A 367 (631)
...|+++.|.+.+....+.. |+. ..+-....++...|+.+.|...+.+..+..+.+. ...-.....+...|+++.|
T Consensus 95 ~~~g~~~~A~~~l~~~~~~~--~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 95 LAEGDYAKAEKLIAKNADHA--AEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAA 172 (409)
T ss_pred HhCCCHHHHHHHHHHHhhcC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHH
Confidence 35699999999998887763 443 3344456778889999999999999876543222 2444458888999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccC
Q 036072 368 GRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRR 447 (631)
Q Consensus 368 ~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g 447 (631)
...++.+.+.. +-+...+..+...+...|++++|.+++..+.+.+..+. ..+..+-. ..+..++ ..+
T Consensus 173 l~~l~~l~~~~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~-~~~~~l~~-------~a~~~~l----~~~ 239 (409)
T TIGR00540 173 RHGVDKLLEMA-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDD-EEFADLEQ-------KAEIGLL----DEA 239 (409)
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCH-HHHHHHHH-------HHHHHHH----HHH
Confidence 99999999975 33667888999999999999999999999999865432 22221100 1111111 122
Q ss_pred CHHHHHHHHHHHHHcCC---CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH-HHHHHHH--HHcCCHHH
Q 036072 448 RMDIVYDLLKEMEERGC---PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTY-NMIMKSY--FQTGNYEM 521 (631)
Q Consensus 448 ~~~~A~~l~~~m~~~g~---~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-~~Li~~~--~~~g~~~~ 521 (631)
..+.+.+.+..+.+... +.+...+..+...+...|+.++|.+++++..+.. ||.... ..++..+ ...++.+.
T Consensus 240 ~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~~--pd~~~~~~~~l~~~~~l~~~~~~~ 317 (409)
T TIGR00540 240 MADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKKL--GDDRAISLPLCLPIPRLKPEDNEK 317 (409)
T ss_pred HHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhC--CCcccchhHHHHHhhhcCCCChHH
Confidence 22323334444443321 1377888899999999999999999999999863 343311 0123333 33577888
Q ss_pred HHHHHHHHHHcCCCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036072 522 GRKVWDEMIRRGCCPDD--NSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599 (631)
Q Consensus 522 A~~~~~~m~~~g~~p~~--~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 599 (631)
+.+.++...+.... |. ....++...|.+.|++++|.+.|+........|+...+..+...+.+.|+.++|.+++++-
T Consensus 318 ~~~~~e~~lk~~p~-~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La~ll~~~g~~~~A~~~~~~~ 396 (409)
T TIGR00540 318 LEKLIEKQAKNVDD-KPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAADAFDQAGDKAEAAAMRQDS 396 (409)
T ss_pred HHHHHHHHHHhCCC-ChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 99998888775322 44 6677889999999999999999996554445789999999999999999999999999874
|
This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis. |
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.42 E-value=5.5e-09 Score=103.76 Aligned_cols=297 Identities=10% Similarity=0.064 Sum_probs=215.7
Q ss_pred HHHHHHHHHHh--cCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 036072 247 TYNSMMSILGR--ARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENL 324 (631)
Q Consensus 247 ~y~~li~~~~~--~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~ 324 (631)
.-..+.+++.+ .|+|..|++++.+-.+.+..+.-.|.....+.-..|+.+.+-..+.+..+..-.++...+-......
T Consensus 84 a~~~~~egl~~l~eG~~~qAEkl~~rnae~~e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarll 163 (400)
T COG3071 84 ARKALNEGLLKLFEGDFQQAEKLLRRNAEHGEQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLL 163 (400)
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHhhhcCcchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHH
Confidence 33445555543 6999999999999888877777778888888888899999999999998874466777777778888
Q ss_pred HcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHHcC
Q 036072 325 GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDV-------VAHNIMLEGLLKIG 397 (631)
Q Consensus 325 ~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-------~ty~~li~~~~~~g 397 (631)
...|+.+.|..-++++.+..+-++........+|.+.|++.....++..|.+.|+--|. .+|+.+++-....+
T Consensus 164 l~~~d~~aA~~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~ 243 (400)
T COG3071 164 LNRRDYPAARENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDN 243 (400)
T ss_pred HhCCCchhHHHHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccc
Confidence 88999999999888888766678888999999999999999999999999998876554 35566665555545
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 036072 398 KRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477 (631)
Q Consensus 398 ~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~ 477 (631)
..+.-...++..-.+ . +.++..-.+++.-+.++|+.++|.++..+..+++..|.. ...-.
T Consensus 244 ~~~gL~~~W~~~pr~-l---------------r~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~~~~ 303 (400)
T COG3071 244 GSEGLKTWWKNQPRK-L---------------RNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CRLIP 303 (400)
T ss_pred cchHHHHHHHhccHH-h---------------hcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HHHHh
Confidence 444444444433221 1 113344445666777788888888888887777666552 12223
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 036072 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEA 557 (631)
Q Consensus 478 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 557 (631)
+.+-++.+.-++..++-.+.. +-+...+.+|...|.+.+.|.+|...|+..++. .|+..+|+.+..++.+.|+..+|
T Consensus 304 ~l~~~d~~~l~k~~e~~l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A 380 (400)
T COG3071 304 RLRPGDPEPLIKAAEKWLKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEA 380 (400)
T ss_pred hcCCCCchHHHHHHHHHHHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHH
Confidence 456677777666666655431 223467778888888888888888888876654 56888888888888888888888
Q ss_pred HHHHHHHHH
Q 036072 558 YKYLEEMLE 566 (631)
Q Consensus 558 ~~ll~~m~~ 566 (631)
.++.++...
T Consensus 381 ~~~r~e~L~ 389 (400)
T COG3071 381 EQVRREALL 389 (400)
T ss_pred HHHHHHHHH
Confidence 888877654
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.40 E-value=3.2e-09 Score=115.58 Aligned_cols=352 Identities=13% Similarity=0.090 Sum_probs=207.1
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-HHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc
Q 036072 248 YNSMMSILGRARQFETMVSMLEEMGEKGLLS-METFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGR 326 (631)
Q Consensus 248 y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~-~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~ 326 (631)
|-.+.+.|-..|+++.|...|.+......-+ .-.+.-+.+.+.+.|+.+.+...|+...+.. +-+..+...|...|..
T Consensus 310 ~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~-p~~~etm~iLG~Lya~ 388 (1018)
T KOG2002|consen 310 FYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQL-PNNYETMKILGCLYAH 388 (1018)
T ss_pred HHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHhC-cchHHHHHHHHhHHHh
Confidence 3334444444444444444444443332221 1123334444444444444444444444432 2233333333333433
Q ss_pred CC----ChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHH----HHHcCCCCCHHHHHHHHHHHHHcCC
Q 036072 327 SK----LPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNE----MIDKGFKPDVVAHNIMLEGLLKIGK 398 (631)
Q Consensus 327 ~g----~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~----m~~~g~~p~~~ty~~li~~~~~~g~ 398 (631)
.+ ..+.|..++.+..+..+.|...|-.+...|-...-+.. +.+|.. |...+..+.....|.+.......|+
T Consensus 389 ~~~~~~~~d~a~~~l~K~~~~~~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~ 467 (1018)
T KOG2002|consen 389 SAKKQEKRDKASNVLGKVLEQTPVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLNNVASLHFRLGN 467 (1018)
T ss_pred hhhhhHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcC
Confidence 32 22333333333333333344444444444443333322 444433 3344555677778888888888899
Q ss_pred HHHHHHHHHHHHHc---CCCCcHH-------HHHHH--HHHHhhc-----------------------------------
Q 036072 399 RSDAIKLFEVMKAK---GPSPNVR-------SYTIM--IWKFCKQ----------------------------------- 431 (631)
Q Consensus 399 ~~~A~~ll~~m~~~---g~~p~~~-------~~~~l--i~~~~~~----------------------------------- 431 (631)
++.|...|...... -..+|.. -||.- ....+..
T Consensus 468 ~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkehp~YId~ylRl~~ma~~k~~~~ 547 (1018)
T KOG2002|consen 468 IEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKEHPGYIDAYLRLGCMARDKNNLY 547 (1018)
T ss_pred hHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHCchhHHHHHHhhHHHHhccCcH
Confidence 99999988887654 1223331 23221 1111110
Q ss_pred ---------------CHHHHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHh------------cCC
Q 036072 432 ---------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEER-GCPPDGLTYNALIKLMKI------------QKM 483 (631)
Q Consensus 432 ---------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~li~~~~~------------~g~ 483 (631)
++.+++-+...+.+...+..|.+-|....+. ...+|.+..-+|-+.|.. .+.
T Consensus 548 ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l~~~~rn~ek~kk~ 627 (1018)
T KOG2002|consen 548 EASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQALHNPSRNPEKEKKH 627 (1018)
T ss_pred HHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHhcccccChHHHHHH
Confidence 4445555555555555555555555444432 122455555555554432 334
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 036072 484 PDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEE 563 (631)
Q Consensus 484 ~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~ 563 (631)
.++|+++|.+.++.. +-|...-|.+.-+++..|++.+|..+|.+..+.... +..+|-.+..+|...|++..|+++|+.
T Consensus 628 ~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~-~~dv~lNlah~~~e~~qy~~AIqmYe~ 705 (1018)
T KOG2002|consen 628 QEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSD-FEDVWLNLAHCYVEQGQYRLAIQMYEN 705 (1018)
T ss_pred HHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHHHhh-CCceeeeHHHHHHHHHHHHHHHHHHHH
Confidence 678999999988864 457778888899999999999999999999986432 556788899999999999999999998
Q ss_pred HHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 036072 564 MLEK-GMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603 (631)
Q Consensus 564 m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 603 (631)
..+. .-..+..+...|..++.+.|.+.+|.+.+.......
T Consensus 706 ~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 706 CLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred HHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 8765 445677889999999999999999999887766544
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.39 E-value=3.9e-10 Score=118.34 Aligned_cols=284 Identities=13% Similarity=0.105 Sum_probs=179.5
Q ss_pred ChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCC--CCcCHHHHHHHHHHHHcCCChHHHHHHH
Q 036072 260 QFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYK--FKAGVDTINCLLENLGRSKLPKEAQLLF 337 (631)
Q Consensus 260 ~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g--~~~~~~~~~~Ll~~~~~~g~~~~A~~l~ 337 (631)
+.++|..+|+.....-.-+..+...+..+|...+++++|+.+|+.+.+.. ..-+.++|.+.+--+-+ +-++..+
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~----~v~Ls~L 409 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQD----EVALSYL 409 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHh----hHHHHHH
Confidence 45677777777555444445666777778888888888888887777642 12244555555433221 1112222
Q ss_pred -HHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 036072 338 -DKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKP-DVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415 (631)
Q Consensus 338 -~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~ 415 (631)
+.+.+..+..+.+|-++..+|.-.++.+.|++.|+...+. .| ...+|..+-.-+.....+|.|...|+.. +.
T Consensus 410 aq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~faYayTLlGhE~~~~ee~d~a~~~fr~A----l~ 483 (638)
T KOG1126|consen 410 AQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPRFAYAYTLLGHESIATEEFDKAMKSFRKA----LG 483 (638)
T ss_pred HHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCccchhhhhcCChhhhhHHHHhHHHHHHhh----hc
Confidence 2233334446677888888888788888888877777763 44 5667777767777777777777777766 34
Q ss_pred CcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 036072 416 PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMV 495 (631)
Q Consensus 416 p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~ 495 (631)
.|...|++ |..|...|.+.++++.|+-.|+...+-+.. +.+....+...+.+.|+.|+|+++++++.
T Consensus 484 ~~~rhYnA------------wYGlG~vy~Kqek~e~Ae~~fqkA~~INP~-nsvi~~~~g~~~~~~k~~d~AL~~~~~A~ 550 (638)
T KOG1126|consen 484 VDPRHYNA------------WYGLGTVYLKQEKLEFAEFHFQKAVEINPS-NSVILCHIGRIQHQLKRKDKALQLYEKAI 550 (638)
T ss_pred CCchhhHH------------HHhhhhheeccchhhHHHHHHHhhhcCCcc-chhHHhhhhHHHHHhhhhhHHHHHHHHHH
Confidence 45666653 455666777777777777777776664333 45555566666777777777777777777
Q ss_pred HCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 036072 496 RSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568 (631)
Q Consensus 496 ~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g 568 (631)
...-+ |...-.-.+..+...+++++|...++++.+.-.+ +...|..+...|.+.|+.+.|+.-|--|.+..
T Consensus 551 ~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~~vP~-es~v~~llgki~k~~~~~~~Al~~f~~A~~ld 621 (638)
T KOG1126|consen 551 HLDPK-NPLCKYHRASILFSLGRYVEALQELEELKELVPQ-ESSVFALLGKIYKRLGNTDLALLHFSWALDLD 621 (638)
T ss_pred hcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHHhCcc-hHHHHHHHHHHHHHHccchHHHHhhHHHhcCC
Confidence 65422 3333334455566677777777777777764211 44556666677777777777777777766654
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.38 E-value=1.1e-09 Score=109.14 Aligned_cols=162 Identities=15% Similarity=0.167 Sum_probs=104.6
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036072 432 NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMK 511 (631)
Q Consensus 432 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~ 511 (631)
+..+.-.+.+.|--..+...|++++.+.... ++-|+....-|...|-+.|+-.+|.+.+-+--+. ++-|..|...|..
T Consensus 557 n~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ydsyry-fp~nie~iewl~a 634 (840)
T KOG2003|consen 557 NAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCHYDSYRY-FPCNIETIEWLAA 634 (840)
T ss_pred hHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhhhhcccc-cCcchHHHHHHHH
Confidence 5555555666666666666666666554432 4445666777777777777777777665544332 3556677777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH-HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHH
Q 036072 512 SYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLI-SQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSY 590 (631)
Q Consensus 512 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~-~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~ 590 (631)
-|....-+++|+.+|++..- +.|+..-|..||..|. +.|++++|.+++++..++ ++-|......|++.+...|..
T Consensus 635 yyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk-fpedldclkflvri~~dlgl~- 710 (840)
T KOG2003|consen 635 YYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK-FPEDLDCLKFLVRIAGDLGLK- 710 (840)
T ss_pred HHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh-CccchHHHHHHHHHhccccch-
Confidence 77777777777777776543 4678888877776665 567888888888777654 455666677777777666643
Q ss_pred HHHHHHHHH
Q 036072 591 VLDELAQKM 599 (631)
Q Consensus 591 ~A~~l~~~m 599 (631)
++.++.+++
T Consensus 711 d~key~~kl 719 (840)
T KOG2003|consen 711 DAKEYADKL 719 (840)
T ss_pred hHHHHHHHH
Confidence 334444443
|
|
| >COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.37 E-value=2.5e-09 Score=102.98 Aligned_cols=292 Identities=17% Similarity=0.120 Sum_probs=218.6
Q ss_pred HccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcc--cCCC--hhhHHHHHHHHHhcCCHHH
Q 036072 291 AAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR--FTPN--LTTYTVLLGGWCRVKNLME 366 (631)
Q Consensus 291 ~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~--~~p~--~~~y~~Li~~~~~~g~~~~ 366 (631)
-.++.++|++.|-+|.+.. +-+..+.-+|.+.|.+.|..+.|+++...+.+. ...+ ......|..-|...|-+|.
T Consensus 47 Ls~Q~dKAvdlF~e~l~~d-~~t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DR 125 (389)
T COG2956 47 LSNQPDKAVDLFLEMLQED-PETFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDR 125 (389)
T ss_pred hhcCcchHHHHHHHHHhcC-chhhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhH
Confidence 4578899999999999854 455666778899999999999999999998764 1111 2345667888999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhcc
Q 036072 367 AGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNR 446 (631)
Q Consensus 367 A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~ 446 (631)
|+++|..+.+.|.. -......|+..|-...+|++|+++-+++.+.+-.+. +.-| ...|.-|...+...
T Consensus 126 AE~~f~~L~de~ef-a~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~----~~eI-------AqfyCELAq~~~~~ 193 (389)
T COG2956 126 AEDIFNQLVDEGEF-AEGALQQLLNIYQATREWEKAIDVAERLVKLGGQTY----RVEI-------AQFYCELAQQALAS 193 (389)
T ss_pred HHHHHHHHhcchhh-hHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccc----hhHH-------HHHHHHHHHHHhhh
Confidence 99999999986422 455678899999999999999999999988654433 2222 23345567777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 036072 447 RRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW 526 (631)
Q Consensus 447 g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~ 526 (631)
.+++.|..++.+..+...+ .+..--.+-......|+++.|.+.|+...+.+..--..+...|..+|...|+.++...++
T Consensus 194 ~~~d~A~~~l~kAlqa~~~-cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQn~~yl~evl~~L~~~Y~~lg~~~~~~~fL 272 (389)
T COG2956 194 SDVDRARELLKKALQADKK-CVRASIILGRVELAKGDYQKAVEALERVLEQNPEYLSEVLEMLYECYAQLGKPAEGLNFL 272 (389)
T ss_pred hhHHHHHHHHHHHHhhCcc-ceehhhhhhHHHHhccchHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHhCCHHHHHHHH
Confidence 8999999999988765322 222333455678899999999999999999865555678899999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHH
Q 036072 527 DEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRA---GRSYVLDELAQKMR 600 (631)
Q Consensus 527 ~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~---g~~~~A~~l~~~m~ 600 (631)
..+.+... +...-..+-.......-.+.|..++.+-+.. .|+...+..|+..-..- |...+-..++++|-
T Consensus 273 ~~~~~~~~--g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r--~Pt~~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 273 RRAMETNT--GADAELMLADLIELQEGIDAAQAYLTRQLRR--KPTMRGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred HHHHHccC--CccHHHHHHHHHHHhhChHHHHHHHHHHHhh--CCcHHHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 99987633 3334444444444555667777777776665 68988888888876433 34555556666664
|
|
| >KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription] | Back alignment and domain information |
|---|
Probab=99.37 E-value=4.9e-09 Score=113.46 Aligned_cols=371 Identities=12% Similarity=0.062 Sum_probs=278.0
Q ss_pred hhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 036072 226 RPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELM 305 (631)
Q Consensus 226 ~~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m 305 (631)
..|.+++..+.++. +.+...|..|..+|-..|+.+++...+-...-..+-+.+.|..+.......|+++.|.-.|.+.
T Consensus 156 eeA~~i~~EvIkqd--p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~p~d~e~W~~ladls~~~~~i~qA~~cy~rA 233 (895)
T KOG2076|consen 156 EEAEEILMEVIKQD--PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLNPKDYELWKRLADLSEQLGNINQARYCYSRA 233 (895)
T ss_pred HHHHHHHHHHHHhC--ccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 45889888876654 3457899999999999999999998887777677778899999999999999999999999999
Q ss_pred HhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChh-----hHHHHHHHHHhcCCHHHHHHHHHHHHHc-CC
Q 036072 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLT-----TYTVLLGGWCRVKNLMEAGRVWNEMIDK-GF 379 (631)
Q Consensus 306 ~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~-----~y~~Li~~~~~~g~~~~A~~l~~~m~~~-g~ 379 (631)
++.. +++...+--=+..|-+.|+...|...|.++-...+|... .--.+++.+...++-+.|.+.++..... +-
T Consensus 234 I~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~~~~ 312 (895)
T KOG2076|consen 234 IQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSKEKD 312 (895)
T ss_pred HhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhccc
Confidence 9986 566666666678899999999999999999876554322 2234466677778889999998887763 23
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHH------HHHHhhc------CHHHHHHHHHHHhccC
Q 036072 380 KPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM------IWKFCKQ------NAAVYTCLITGFGNRR 447 (631)
Q Consensus 380 ~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~l------i~~~~~~------~~~~~~~li~~~~~~g 447 (631)
.-+...+++++..+.+...++.|......+......+|..-+.+- ...++.. +..+ --++-++.+.+
T Consensus 313 ~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v-~rl~icL~~L~ 391 (895)
T KOG2076|consen 313 EASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRV-IRLMICLVHLK 391 (895)
T ss_pred cccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchh-HhHhhhhhccc
Confidence 345667889999999999999999999888774444444333110 0001110 1111 12334455555
Q ss_pred CHHHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 036072 448 RMDIVYDLLKEMEERG--CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525 (631)
Q Consensus 448 ~~~~A~~l~~~m~~~g--~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~ 525 (631)
..+....+...+.+.. +.-+...|.-+..+|...|++.+|+.+|..+......-+...|-.+..+|...|.+++|.+.
T Consensus 392 ~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A~e~ 471 (895)
T KOG2076|consen 392 ERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEAIEF 471 (895)
T ss_pred ccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHHHHH
Confidence 6666666666666665 33356688889999999999999999999999876666788999999999999999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--------CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036072 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLE--------KGMKAPVLDYNKFAADLSRAGRSYVLDELAQ 597 (631)
Q Consensus 526 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~--------~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 597 (631)
|+..+..... +...--.|-..+.+.|+.++|.+.+..+.. .+..|+....-.....+...|+.++-.....
T Consensus 472 y~kvl~~~p~-~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi~t~~ 550 (895)
T KOG2076|consen 472 YEKVLILAPD-NLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFINTAS 550 (895)
T ss_pred HHHHHhcCCC-chhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 9999875322 344455566678899999999999998542 2455666666777788889999887666655
Q ss_pred HHHh
Q 036072 598 KMRF 601 (631)
Q Consensus 598 ~m~~ 601 (631)
.|-.
T Consensus 551 ~Lv~ 554 (895)
T KOG2076|consen 551 TLVD 554 (895)
T ss_pred HHHH
Confidence 5544
|
|
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2e-10 Score=123.33 Aligned_cols=255 Identities=18% Similarity=0.091 Sum_probs=175.4
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 036072 345 TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424 (631)
Q Consensus 345 ~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~l 424 (631)
.++..+|.+++..-.-+|+.+.|..++.+|++.|+..+..-|-.|+-+ .++...+..++..|.+.|+.|+..|+...
T Consensus 201 ~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~ady 277 (1088)
T KOG4318|consen 201 APTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADY 277 (1088)
T ss_pred CCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHH
Confidence 379999999999999999999999999999999999998877777765 78888999999999999999999998776
Q ss_pred HHHHhhc-------------------------------------------------------------------------
Q 036072 425 IWKFCKQ------------------------------------------------------------------------- 431 (631)
Q Consensus 425 i~~~~~~------------------------------------------------------------------------- 431 (631)
+-.+.+.
T Consensus 278 vip~l~N~~t~~~~e~sq~~hg~tAavrsaa~rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l~hQgk~ 357 (1088)
T KOG4318|consen 278 VIPQLSNGQTKYGEEGSQLAHGFTAAVRSAACRGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKLRHQGKG 357 (1088)
T ss_pred HHhhhcchhhhhcccccchhhhhhHHHHHHHhcccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHHHHcCCC
Confidence 5544441
Q ss_pred --------------------CHHHHHHHHHHHhcc----------------------CCHHHHHHHHHHHHH--------
Q 036072 432 --------------------NAAVYTCLITGFGNR----------------------RRMDIVYDLLKEMEE-------- 461 (631)
Q Consensus 432 --------------------~~~~~~~li~~~~~~----------------------g~~~~A~~l~~~m~~-------- 461 (631)
++..|..++.-|.+. .+..+..++......
T Consensus 358 e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv 437 (1088)
T KOG4318|consen 358 EEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLV 437 (1088)
T ss_pred chHHHHHhhhcCCccccCcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHh
Confidence 222232222222211 111111111111100
Q ss_pred --------cCCCC-------CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 036072 462 --------RGCPP-------DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW 526 (631)
Q Consensus 462 --------~g~~p-------~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~ 526 (631)
+-+.| --..-+.++..|+..-+..+++..-++....-+. ..|..||+-++.....+.|..+.
T Consensus 438 ~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~lf~---g~ya~Li~l~~~hdkle~Al~~~ 514 (1088)
T KOG4318|consen 438 GLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDLLFA---GLYALLIKLMDLHDKLEYALSFV 514 (1088)
T ss_pred hhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh---hHHHHHhhhHHHHHHHHHHHhch
Confidence 00111 0112456666777777777777665555543222 67889999999999999999999
Q ss_pred HHHHHc--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036072 527 DEMIRR--GCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM-KAP-VLDYNKFAADLSRAGRSYVLDELAQKMRFS 602 (631)
Q Consensus 527 ~~m~~~--g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~-~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 602 (631)
+++... .+..|..-+..+.+.+.+.+...++.++++++.+.-. .|+ ..++-.+++.....|+.+...++.+-+...
T Consensus 515 ~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvsl 594 (1088)
T KOG4318|consen 515 DEIDTRDESIHLDLPLMTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSL 594 (1088)
T ss_pred hhhcccchhhhcccHhHHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHh
Confidence 888754 3445777788888889999999999999999876422 222 344556777778888888888887776665
Q ss_pred CCC
Q 036072 603 GKF 605 (631)
Q Consensus 603 g~~ 605 (631)
|..
T Consensus 595 gl~ 597 (1088)
T KOG4318|consen 595 GLS 597 (1088)
T ss_pred hhh
Confidence 543
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.34 E-value=2.3e-08 Score=100.75 Aligned_cols=293 Identities=13% Similarity=0.078 Sum_probs=220.4
Q ss_pred HHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccC---CChhhHHHHHHHHHhcC
Q 036072 286 MNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT---PNLTTYTVLLGGWCRVK 362 (631)
Q Consensus 286 i~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~---p~~~~y~~Li~~~~~~g 362 (631)
..++-.....+++.+-.+.....|++-+...-+....+.-...+++.|+.+|+++.+..+ .|..+|..++-.-....
T Consensus 234 ~~a~~el~q~~e~~~k~e~l~~~gf~~~~~i~~~~A~~~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~s 313 (559)
T KOG1155|consen 234 KKAYQELHQHEEALQKKERLSSVGFPNSMYIKTQIAAASYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKS 313 (559)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhH
Confidence 345555567777777778888888777766666666677778899999999999877533 36677877764433322
Q ss_pred CHH-HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHH
Q 036072 363 NLM-EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLIT 441 (631)
Q Consensus 363 ~~~-~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~ 441 (631)
.+. -|..+++ -...+ ..|..++.+.|.-.++.++|...|+...+.+ |. ...+|+.+.+
T Consensus 314 kLs~LA~~v~~---idKyR--~ETCCiIaNYYSlr~eHEKAv~YFkRALkLN--p~--------------~~~aWTLmGH 372 (559)
T KOG1155|consen 314 KLSYLAQNVSN---IDKYR--PETCCIIANYYSLRSEHEKAVMYFKRALKLN--PK--------------YLSAWTLMGH 372 (559)
T ss_pred HHHHHHHHHHH---hccCC--ccceeeehhHHHHHHhHHHHHHHHHHHHhcC--cc--------------hhHHHHHhhH
Confidence 211 1222211 11223 3467777888888899999999999998753 33 3456777888
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 036072 442 GFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEM 521 (631)
Q Consensus 442 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~ 521 (631)
-|...++...|.+-++...+-.. .|-..|-.|-++|.-.+...-|+-.|++..+.. +-|...|.+|.++|.+.++.++
T Consensus 373 EyvEmKNt~AAi~sYRrAvdi~p-~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~~k-PnDsRlw~aLG~CY~kl~~~~e 450 (559)
T KOG1155|consen 373 EYVEMKNTHAAIESYRRAVDINP-RDYRAWYGLGQAYEIMKMHFYALYYFQKALELK-PNDSRLWVALGECYEKLNRLEE 450 (559)
T ss_pred HHHHhcccHHHHHHHHHHHhcCc-hhHHHHhhhhHHHHHhcchHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHhccHHH
Confidence 99999999999999999988743 488899999999999999999999999998863 4578899999999999999999
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHH
Q 036072 522 GRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK----GMKAP--VLDYNKFAADLSRAGRSYVLDEL 595 (631)
Q Consensus 522 A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~----g~~p~--~~~~~~li~~~~~~g~~~~A~~l 595 (631)
|++-|......|-. +...+..|...|-+.++.++|..+|++.++. |...+ .....-|..-+.+.+++++|..+
T Consensus 451 AiKCykrai~~~dt-e~~~l~~LakLye~l~d~~eAa~~yek~v~~~~~eg~~~~~t~ka~~fLA~~f~k~~~~~~As~Y 529 (559)
T KOG1155|consen 451 AIKCYKRAILLGDT-EGSALVRLAKLYEELKDLNEAAQYYEKYVEVSELEGEIDDETIKARLFLAEYFKKMKDFDEASYY 529 (559)
T ss_pred HHHHHHHHHhcccc-chHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHhhcchHHHHHH
Confidence 99999999886533 6688999999999999999999998887652 43322 22223366777899999999998
Q ss_pred HHHHHhc
Q 036072 596 AQKMRFS 602 (631)
Q Consensus 596 ~~~m~~~ 602 (631)
..+....
T Consensus 530 a~~~~~~ 536 (559)
T KOG1155|consen 530 ATLVLKG 536 (559)
T ss_pred HHHHhcC
Confidence 8776643
|
|
| >COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism] | Back alignment and domain information |
|---|
Probab=99.31 E-value=1.8e-08 Score=100.10 Aligned_cols=292 Identities=11% Similarity=0.091 Sum_probs=232.4
Q ss_pred HccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcc-cCCChhhHHHHHHHHHhcCCHHHHHH
Q 036072 291 AAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGR 369 (631)
Q Consensus 291 ~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~-~~p~~~~y~~Li~~~~~~g~~~~A~~ 369 (631)
..|++.+|++...+-.+.+ +.....|..-..+.-..|+.+.+-.++.+..+. ..++...+-+........|+++.|..
T Consensus 96 ~eG~~~qAEkl~~rnae~~-e~p~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 96 FEGDFQQAEKLLRRNAEHG-EQPVLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred hcCcHHHHHHHHHHhhhcC-cchHHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHHH
Confidence 3699999999999988887 445556666778888899999999999998764 45566778888899999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCH
Q 036072 370 VWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRM 449 (631)
Q Consensus 370 l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~ 449 (631)
-++++.+.+.. +.........+|.+.|++..+..++..|.+.|.-.+...-. + ...+|+.+++-....+..
T Consensus 175 ~v~~ll~~~pr-~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~-l-------e~~a~~glL~q~~~~~~~ 245 (400)
T COG3071 175 NVDQLLEMTPR-HPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR-L-------EQQAWEGLLQQARDDNGS 245 (400)
T ss_pred HHHHHHHhCcC-ChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH-H-------HHHHHHHHHHHHhccccc
Confidence 99999987544 56678889999999999999999999999998765543221 1 345677777777766777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 036072 450 DIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEM 529 (631)
Q Consensus 450 ~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m 529 (631)
+.-...++....+ .+-++..-.+++.-+...|+.++|.++.++..+.+..|+..+ + -.+.+-++...-.+..++-
T Consensus 246 ~gL~~~W~~~pr~-lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~---~-~~~l~~~d~~~l~k~~e~~ 320 (400)
T COG3071 246 EGLKTWWKNQPRK-LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCR---L-IPRLRPGDPEPLIKAAEKW 320 (400)
T ss_pred hHHHHHHHhccHH-hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHH---H-HhhcCCCCchHHHHHHHHH
Confidence 7766677666543 444667777888889999999999999999999887776222 2 2345667777777777766
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036072 530 IRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600 (631)
Q Consensus 530 ~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 600 (631)
.+.. .-++..+.+|...|.+++.+.+|.+.|+...+. .|+..+|+-+..++.+.|+..+|.++.++-.
T Consensus 321 l~~h-~~~p~L~~tLG~L~~k~~~w~kA~~~leaAl~~--~~s~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 321 LKQH-PEDPLLLSTLGRLALKNKLWGKASEALEAALKL--RPSASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHhC-CCChhHHHHHHHHHHHhhHHHHHHHHHHHHHhc--CCChhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 6542 225588899999999999999999999977774 7899999999999999999999999887654
|
|
| >KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=99.29 E-value=3.3e-08 Score=99.64 Aligned_cols=165 Identities=10% Similarity=-0.019 Sum_probs=142.3
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036072 433 AAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKS 512 (631)
Q Consensus 433 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~ 512 (631)
+.|...+.+.|.-.++.++|...|+...+.+.. ....|+.+-.-|...++...|.+-|+..++-. +-|-..|-.|.++
T Consensus 330 ~ETCCiIaNYYSlr~eHEKAv~YFkRALkLNp~-~~~aWTLmGHEyvEmKNt~AAi~sYRrAvdi~-p~DyRAWYGLGQa 407 (559)
T KOG1155|consen 330 PETCCIIANYYSLRSEHEKAVMYFKRALKLNPK-YLSAWTLMGHEYVEMKNTHAAIESYRRAVDIN-PRDYRAWYGLGQA 407 (559)
T ss_pred ccceeeehhHHHHHHhHHHHHHHHHHHHhcCcc-hhHHHHHhhHHHHHhcccHHHHHHHHHHHhcC-chhHHHHhhhhHH
Confidence 345556677888889999999999998876433 45677778888999999999999999999875 5688999999999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 036072 513 YFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVL 592 (631)
Q Consensus 513 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 592 (631)
|.-.+...-|.-+|++..+-... |...|.+|..+|.+.++.++|.+.|+.....| ..+...|..|...+-+.++.++|
T Consensus 408 Yeim~Mh~YaLyYfqkA~~~kPn-DsRlw~aLG~CY~kl~~~~eAiKCykrai~~~-dte~~~l~~LakLye~l~d~~eA 485 (559)
T KOG1155|consen 408 YEIMKMHFYALYYFQKALELKPN-DSRLWVALGECYEKLNRLEEAIKCYKRAILLG-DTEGSALVRLAKLYEELKDLNEA 485 (559)
T ss_pred HHHhcchHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHhccHHHHHHHHHHHHhcc-ccchHHHHHHHHHHHHHHhHHHH
Confidence 99999999999999999886433 88999999999999999999999999999887 33667899999999999999999
Q ss_pred HHHHHHHHh
Q 036072 593 DELAQKMRF 601 (631)
Q Consensus 593 ~~l~~~m~~ 601 (631)
.+.+++--+
T Consensus 486 a~~yek~v~ 494 (559)
T KOG1155|consen 486 AQYYEKYVE 494 (559)
T ss_pred HHHHHHHHH
Confidence 988876543
|
|
| >KOG2003 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.29 E-value=7.9e-09 Score=103.27 Aligned_cols=369 Identities=14% Similarity=0.084 Sum_probs=205.6
Q ss_pred HHHHHHHhhcCCCCCCCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCHH----HHHHHHHHHHHccCHHHHHHH
Q 036072 228 AFRFFCWAGDKPGFAHNS-RTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSME----TFKIAMNAFAAAKERKKAVAI 301 (631)
Q Consensus 228 A~~~f~~~~~~~g~~p~~-~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~-~~~~----~~~~li~~~~~~g~~~~A~~v 301 (631)
|+..++-+.+.. .-||. ..-..+-..+.+.+.+.+|+++|+....+-+ ++.. +.+.+...+.+.|.++.|+..
T Consensus 220 alntyeiivknk-mf~nag~lkmnigni~~kkr~fskaikfyrmaldqvpsink~~rikil~nigvtfiq~gqy~dains 298 (840)
T KOG2003|consen 220 ALNTYEIIVKNK-MFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQVPSINKDMRIKILNNIGVTFIQAGQYDDAINS 298 (840)
T ss_pred Hhhhhhhhhccc-ccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhccccchhhHHHHHhhcCeeEEecccchhhHhh
Confidence 555555543332 22332 2223344566777888888888877766543 2322 455555667788999999999
Q ss_pred HHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcc---------c----CCChhhHHH-----HHHHHHhcCC
Q 036072 302 FELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR---------F----TPNLTTYTV-----LLGGWCRVKN 363 (631)
Q Consensus 302 ~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~---------~----~p~~~~y~~-----Li~~~~~~g~ 363 (631)
|+...+. .|+..+--.|+-++..-|+.++..+.|.+|..- + .|+....|. .+.-+-+.+.
T Consensus 299 fdh~m~~--~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~lk~~ek~~k 376 (840)
T KOG2003|consen 299 FDHCMEE--APNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDHLKNMEKENK 376 (840)
T ss_pred HHHHHHh--CccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHHHHHHHHhhh
Confidence 9888876 477766666666666788999999999888531 1 133333322 2222222221
Q ss_pred --HHHHHHHHHHHHHcCCCCCHH-----H--------HH--------HHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHH
Q 036072 364 --LMEAGRVWNEMIDKGFKPDVV-----A--------HN--------IMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRS 420 (631)
Q Consensus 364 --~~~A~~l~~~m~~~g~~p~~~-----t--------y~--------~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~ 420 (631)
-++++-.--++..--+.|+.. . |. .-...|.+.|+++.|++++.-+.+..-......
T Consensus 377 a~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~dlei~ka~~~lk~~d~~~aieilkv~~~kdnk~~saa 456 (840)
T KOG2003|consen 377 ADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAIDLEINKAGELLKNGDIEGAIEILKVFEKKDNKTASAA 456 (840)
T ss_pred hhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhhhhhhHHHHHHhccCHHHHHHHHHHHHhccchhhHHH
Confidence 122221111222222233311 0 00 011246789999999999988876533222111
Q ss_pred HHHH--HHHH--hhc-----------------CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC-------------
Q 036072 421 YTIM--IWKF--CKQ-----------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPP------------- 466 (631)
Q Consensus 421 ~~~l--i~~~--~~~-----------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p------------- 466 (631)
-+.| +..+ .+. ++.....-.+....+|++++|.+.+++.....-.-
T Consensus 457 a~nl~~l~flqggk~~~~aqqyad~aln~dryn~~a~~nkgn~~f~ngd~dka~~~ykeal~ndasc~ealfniglt~e~ 536 (840)
T KOG2003|consen 457 ANNLCALRFLQGGKDFADAQQYADIALNIDRYNAAALTNKGNIAFANGDLDKAAEFYKEALNNDASCTEALFNIGLTAEA 536 (840)
T ss_pred hhhhHHHHHHhcccchhHHHHHHHHHhcccccCHHHhhcCCceeeecCcHHHHHHHHHHHHcCchHHHHHHHHhcccHHH
Confidence 1111 1111 000 11111111112223455666666665554432111
Q ss_pred --------------------CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 036072 467 --------------------DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW 526 (631)
Q Consensus 467 --------------------~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~ 526 (631)
+.....-+...|....+..+|++++.+.... ++.|....+.|...|-+.|+-..|.+.+
T Consensus 537 ~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~sl-ip~dp~ilskl~dlydqegdksqafq~~ 615 (840)
T KOG2003|consen 537 LGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANSL-IPNDPAILSKLADLYDQEGDKSQAFQCH 615 (840)
T ss_pred hcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhccc-CCCCHHHHHHHHHHhhcccchhhhhhhh
Confidence 2222333333344444444444444333322 3445666777777777777777776665
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHHhcC
Q 036072 527 DEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADL-SRAGRSYVLDELAQKMRFSG 603 (631)
Q Consensus 527 ~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~-~~~g~~~~A~~l~~~m~~~g 603 (631)
-+--.. +.-|..+..-|..-|....-+++|+.+|++..- +.|+..-|..++..| .+.|++..|.++++++...-
T Consensus 616 ydsyry-fp~nie~iewl~ayyidtqf~ekai~y~ekaal--iqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrkf 690 (840)
T KOG2003|consen 616 YDSYRY-FPCNIETIEWLAAYYIDTQFSEKAINYFEKAAL--IQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRKF 690 (840)
T ss_pred hhcccc-cCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHh--cCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhC
Confidence 433322 334666777777777788888899999987754 689999999877655 57899999999999876543
|
|
| >KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.27 E-value=2e-09 Score=113.09 Aligned_cols=280 Identities=15% Similarity=0.024 Sum_probs=211.3
Q ss_pred CHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcc---cCCChhhHHHHHHHHHhcCCHHHHHHH
Q 036072 294 ERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR---FTPNLTTYTVLLGGWCRVKNLMEAGRV 370 (631)
Q Consensus 294 ~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~---~~p~~~~y~~Li~~~~~~g~~~~A~~l 370 (631)
+.++|+..|..+.+. +.-+..+...+..+|...+++++|+++|+.++.. ...+..+|.+.+-.+-+. -++..
T Consensus 334 ~~~~A~~~~~klp~h-~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~----v~Ls~ 408 (638)
T KOG1126|consen 334 NCREALNLFEKLPSH-HYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDE----VALSY 408 (638)
T ss_pred HHHHHHHHHHhhHHh-cCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhh----HHHHH
Confidence 567899999885554 3444577778899999999999999999999764 334677888877554332 12222
Q ss_pred H-HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCH
Q 036072 371 W-NEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRM 449 (631)
Q Consensus 371 ~-~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~ 449 (631)
+ +++.+. -+-.+.+|.++-.+|.-.++.+.|++.|++..+. +|+ ...+|+.+.+-+.....+
T Consensus 409 Laq~Li~~-~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQl--dp~--------------faYayTLlGhE~~~~ee~ 471 (638)
T KOG1126|consen 409 LAQDLIDT-DPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQL--DPR--------------FAYAYTLLGHESIATEEF 471 (638)
T ss_pred HHHHHHhh-CCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhcc--CCc--------------cchhhhhcCChhhhhHHH
Confidence 2 222222 2335789999999999999999999999998873 452 223444555566667789
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHH---HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 036072 450 DIVYDLLKEMEERGCPPDGLTYNA---LIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW 526 (631)
Q Consensus 450 ~~A~~l~~~m~~~g~~p~~~t~~~---li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~ 526 (631)
|.|...|+.... .|...||+ |...|.+.++++.|+-.|++..+-+ +-+......+...+-+.|+.++|++++
T Consensus 472 d~a~~~fr~Al~----~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~IN-P~nsvi~~~~g~~~~~~k~~d~AL~~~ 546 (638)
T KOG1126|consen 472 DKAMKSFRKALG----VDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEIN-PSNSVILCHIGRIQHQLKRKDKALQLY 546 (638)
T ss_pred HhHHHHHHhhhc----CCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCC-ccchhHHhhhhHHHHHhhhhhHHHHHH
Confidence 999999987654 35555555 5667999999999999999999864 446677788888899999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036072 527 DEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFS 602 (631)
Q Consensus 527 ~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 602 (631)
++......+ |+..--..+..+...+++++|+..++++++. ++-+...|-.+...|-+.|+.+.|+.-+.-+-..
T Consensus 547 ~~A~~ld~k-n~l~~~~~~~il~~~~~~~eal~~LEeLk~~-vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~l 620 (638)
T KOG1126|consen 547 EKAIHLDPK-NPLCKYHRASILFSLGRYVEALQELEELKEL-VPQESSVFALLGKIYKRLGNTDLALLHFSWALDL 620 (638)
T ss_pred HHHHhcCCC-CchhHHHHHHHHHhhcchHHHHHHHHHHHHh-CcchHHHHHHHHHHHHHHccchHHHHhhHHHhcC
Confidence 999987555 5555445666788889999999999999985 2334566889999999999999998877665543
|
|
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.20 E-value=1.5e-08 Score=98.26 Aligned_cols=90 Identities=11% Similarity=0.037 Sum_probs=40.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 036072 474 LIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDR 553 (631)
Q Consensus 474 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 553 (631)
+...+...|++++|...+.+..+.. +.+...+..+...+...|++++|...+++..+. ...+...+..+...+...|+
T Consensus 141 l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 218 (234)
T TIGR02521 141 AGLCALKAGDFDKAEKYLTRALQID-PQRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGD 218 (234)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-cCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhh
Confidence 3444444455555555554444432 112334444444555555555555555554443 12233444444444445555
Q ss_pred HHHHHHHHHHHH
Q 036072 554 SGEAYKYLEEML 565 (631)
Q Consensus 554 ~~~A~~ll~~m~ 565 (631)
.++|..+.+.+.
T Consensus 219 ~~~a~~~~~~~~ 230 (234)
T TIGR02521 219 VAAAQRYGAQLQ 230 (234)
T ss_pred HHHHHHHHHHHH
Confidence 555555544443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW | Back alignment and domain information |
|---|
Probab=99.18 E-value=2.1e-08 Score=97.32 Aligned_cols=86 Identities=8% Similarity=0.022 Sum_probs=36.8
Q ss_pred HhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHH
Q 036072 443 FGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMG 522 (631)
Q Consensus 443 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A 522 (631)
+...|++++|...+.+..+... .+...+..+...+...|++++|..++++..+. ...+...+..+...+...|+.++|
T Consensus 145 ~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a 222 (234)
T TIGR02521 145 ALKAGDFDKAEKYLTRALQIDP-QRPESLLELAELYYLRGQYKDARAYLERYQQT-YNQTAESLWLGIRIARALGDVAAA 222 (234)
T ss_pred HHHcCCHHHHHHHHHHHHHhCc-CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHHhhHHHH
Confidence 3334444444444444333211 12333444444444455555555555544443 122333344444444445555555
Q ss_pred HHHHHHHH
Q 036072 523 RKVWDEMI 530 (631)
Q Consensus 523 ~~~~~~m~ 530 (631)
..+++.+.
T Consensus 223 ~~~~~~~~ 230 (234)
T TIGR02521 223 QRYGAQLQ 230 (234)
T ss_pred HHHHHHHH
Confidence 55444443
|
Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain. |
| >KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.17 E-value=7.2e-10 Score=119.10 Aligned_cols=82 Identities=20% Similarity=0.192 Sum_probs=42.5
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036072 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545 (631)
Q Consensus 466 p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li 545 (631)
|+..+|.+++..-..+|+.+.|..++.+|.+.|+..+..-|-.|+-+ .++..-++.+++-|.+.|+.|+..|+...+
T Consensus 202 ~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p~seT~adyv 278 (1088)
T KOG4318|consen 202 PTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYFWPLLLG---INAAQVFEFVLRGMQEKGVQPGSETQADYV 278 (1088)
T ss_pred CChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccchhhhhc---CccchHHHHHHHHHHHhcCCCCcchhHHHH
Confidence 45555555555555555555555555555555555555444444433 444444555555555555555555555554
Q ss_pred HHHHH
Q 036072 546 GGLIS 550 (631)
Q Consensus 546 ~~~~~ 550 (631)
..+..
T Consensus 279 ip~l~ 283 (1088)
T KOG4318|consen 279 IPQLS 283 (1088)
T ss_pred Hhhhc
Confidence 44444
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.17 E-value=5.3e-07 Score=94.54 Aligned_cols=359 Identities=10% Similarity=0.037 Sum_probs=234.1
Q ss_pred CCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCH
Q 036072 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL---SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGV 314 (631)
Q Consensus 238 ~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~---~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~ 314 (631)
..|+..|...|-.=...+-+.|..-.+..+......-|+- -..+|..-...|.+.+.++-|..+|...++.- +.+.
T Consensus 472 ~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvf-p~k~ 550 (913)
T KOG0495|consen 472 ANGVEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVF-PCKK 550 (913)
T ss_pred hcceeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhc-cchh
Confidence 4567777777777777777777777777777777777663 23367777777777777777777777776642 4455
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 036072 315 DTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLL 394 (631)
Q Consensus 315 ~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~ 394 (631)
..|..+...--..|..+....+|++.....+.....|-....-+-..|++..|..++....+.... +...|-.-+....
T Consensus 551 slWlra~~~ek~hgt~Esl~Allqkav~~~pkae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~ 629 (913)
T KOG0495|consen 551 SLWLRAAMFEKSHGTRESLEALLQKAVEQCPKAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEF 629 (913)
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCcchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhh
Confidence 566665555555667777777777766666656666666666666777777777777766665322 5556666666666
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhc-----------------CHHHHHHHHHHHhccCCHHHHHHHHH
Q 036072 395 KIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ-----------------NAAVYTCLITGFGNRRRMDIVYDLLK 457 (631)
Q Consensus 395 ~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~-----------------~~~~~~~li~~~~~~g~~~~A~~l~~ 457 (631)
.+.+++.|..+|......+-.+-+.+-++-+.-+... -...|-.+.+.+-+.++++.|.+.|.
T Consensus 630 en~e~eraR~llakar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~ 709 (913)
T KOG0495|consen 630 ENDELERARDLLAKARSISGTERVWMKSANLERYLDNVEEALRLLEEALKSFPDFHKLWLMLGQIEEQMENIEMAREAYL 709 (913)
T ss_pred ccccHHHHHHHHHHHhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHhCCchHHHHHHHhHHHHHHHHHHHHHHHHH
Confidence 6666677766666655432222222211111111111 22345555566666666777766665
Q ss_pred HHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----C
Q 036072 458 EMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR----G 533 (631)
Q Consensus 458 ~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~----g 533 (631)
.-... ++-..-.|-.|...=-+.|.+-+|..++++..-.+ +-+...|-..|++=.+.|+.+.|..++.+.+.. |
T Consensus 710 ~G~k~-cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg 787 (913)
T KOG0495|consen 710 QGTKK-CPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSG 787 (913)
T ss_pred hcccc-CCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccc
Confidence 54333 33344566666666677778888888888877664 446778888888888888888887766655442 1
Q ss_pred -------------------------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 036072 534 -------------------------CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588 (631)
Q Consensus 534 -------------------------~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~ 588 (631)
+.-|....-.+...+....++++|.+.|.+.+..+ +-...+|.-+...+.++|.
T Consensus 788 ~LWaEaI~le~~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d-~d~GD~wa~fykfel~hG~ 866 (913)
T KOG0495|consen 788 LLWAEAIWLEPRPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKD-PDNGDAWAWFYKFELRHGT 866 (913)
T ss_pred hhHHHHHHhccCcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccC-CccchHHHHHHHHHHHhCC
Confidence 12345555566666777788899999999988765 3345678888888889998
Q ss_pred HHHHHHHHHHHHh
Q 036072 589 SYVLDELAQKMRF 601 (631)
Q Consensus 589 ~~~A~~l~~~m~~ 601 (631)
-+.-.+++.+...
T Consensus 867 eed~kev~~~c~~ 879 (913)
T KOG0495|consen 867 EEDQKEVLKKCET 879 (913)
T ss_pred HHHHHHHHHHHhc
Confidence 8888888887754
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.17 E-value=3.7e-08 Score=108.97 Aligned_cols=215 Identities=10% Similarity=0.019 Sum_probs=107.0
Q ss_pred ChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 036072 329 LPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEV 408 (631)
Q Consensus 329 ~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~ 408 (631)
+.++|...+++..+..+.+...+..+...+...|++++|...|++..+.. +.+...+..+...+...|++++|...++.
T Consensus 319 ~~~~A~~~~~~Al~ldP~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi~~~~~ 397 (553)
T PRK12370 319 AMIKAKEHAIKATELDHNNPQALGLLGLINTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEALQTINE 397 (553)
T ss_pred HHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 35566666666555445555566666666666666666666666666542 11344555555666666666666666666
Q ss_pred HHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 036072 409 MKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAV 488 (631)
Q Consensus 409 m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~ 488 (631)
..+.. |+... .+..++..+...|++++|...+++..+...+-+...+..+..++...|+.++|.
T Consensus 398 Al~l~--P~~~~--------------~~~~~~~~~~~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~ 461 (553)
T PRK12370 398 CLKLD--PTRAA--------------AGITKLWITYYHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELAR 461 (553)
T ss_pred HHhcC--CCChh--------------hHHHHHHHHHhccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHH
Confidence 65532 22110 001111223334566666666666554422213334455555566666666666
Q ss_pred HHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 489 RIYKEMVRSGFKPT-IHTYNMIMKSYFQTGNYEMGRKVWDEMIRR-GCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLE 566 (631)
Q Consensus 489 ~l~~~m~~~g~~p~-~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~ 566 (631)
..+.++... .|+ ....+.+...|+..| ++|...++.+.+. ...+....+..+ .|.-.|+.+.+..+ +++.+
T Consensus 462 ~~~~~~~~~--~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~~~~~~~~~~~~--~~~~~g~~~~~~~~-~~~~~ 534 (553)
T PRK12370 462 KLTKEISTQ--EITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQRIDNNPGLLPL--VLVAHGEAIAEKMW-NKFKN 534 (553)
T ss_pred HHHHHhhhc--cchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhhHhhcCchHHHH--HHHHHhhhHHHHHH-HHhhc
Confidence 666665443 222 223334444445555 3555555554432 111121222222 23444555555444 55555
Q ss_pred C
Q 036072 567 K 567 (631)
Q Consensus 567 ~ 567 (631)
.
T Consensus 535 ~ 535 (553)
T PRK12370 535 E 535 (553)
T ss_pred c
Confidence 4
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.16 E-value=6.8e-11 Score=84.99 Aligned_cols=49 Identities=37% Similarity=0.793 Sum_probs=30.5
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 036072 346 PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLL 394 (631)
Q Consensus 346 p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~ 394 (631)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.+|++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~ 49 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLC 49 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHc
Confidence 4556666666666666666666666666666666666666666666654
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.16 E-value=2.6e-06 Score=86.30 Aligned_cols=369 Identities=11% Similarity=0.051 Sum_probs=247.1
Q ss_pred hHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 036072 227 PAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMN 306 (631)
Q Consensus 227 ~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~ 306 (631)
.|..+|+...... ..+...|-.-+..=.+++++..|..++++....-+--...|-..+..=-..|++..|.++|+...
T Consensus 91 RARSv~ERALdvd--~r~itLWlkYae~Emknk~vNhARNv~dRAvt~lPRVdqlWyKY~ymEE~LgNi~gaRqiferW~ 168 (677)
T KOG1915|consen 91 RARSVFERALDVD--YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTILPRVDQLWYKYIYMEEMLGNIAGARQIFERWM 168 (677)
T ss_pred HHHHHHHHHHhcc--cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHhcchHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 4888888764322 33567788888888899999999999999887644334466666667777899999999999998
Q ss_pred hCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CC-CCCHH
Q 036072 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK-GF-KPDVV 384 (631)
Q Consensus 307 ~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~-g~-~p~~~ 384 (631)
+. .|+...|++.|+.=.+.+.++.|..+++...-- .|++..|--....=.+.|+...|..+|....+. |- ..+..
T Consensus 169 ~w--~P~eqaW~sfI~fElRykeieraR~IYerfV~~-HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~d~~~e~ 245 (677)
T KOG1915|consen 169 EW--EPDEQAWLSFIKFELRYKEIERARSIYERFVLV-HPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGDDEEAEI 245 (677)
T ss_pred cC--CCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhee-cccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhhHHHHHH
Confidence 86 799999999999999999999999999987643 388999998888889999999999999888764 11 11223
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcH---HHHHHHH---HHHhhc------------------------CHH
Q 036072 385 AHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV---RSYTIMI---WKFCKQ------------------------NAA 434 (631)
Q Consensus 385 ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~---~~~~~li---~~~~~~------------------------~~~ 434 (631)
.+.+....=.++..++.|.-+|.-..+. .|.. ..|..+. ..+... |-.
T Consensus 246 lfvaFA~fEe~qkE~ERar~iykyAld~--~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~np~nYD 323 (677)
T KOG1915|consen 246 LFVAFAEFEERQKEYERARFIYKYALDH--IPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKNPYNYD 323 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh--cCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhCCCCch
Confidence 3444444434456677777777666553 1221 1111111 111110 555
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHH-------HHHHHHHH---HHhcCChhHHHHHHHHHHHC-------
Q 036072 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGL-------TYNALIKL---MKIQKMPDEAVRIYKEMVRS------- 497 (631)
Q Consensus 435 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-------t~~~li~~---~~~~g~~~~A~~l~~~m~~~------- 497 (631)
+|--.+..-...|+.+...++|+..... ++|-.. .|..+=-+ =....+++.+.++|+..++.
T Consensus 324 sWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lIPHkkFt 402 (677)
T KOG1915|consen 324 SWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLIPHKKFT 402 (677)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhcCcccch
Confidence 6666777777788888888888888765 444221 12111111 13456666666666554441
Q ss_pred -----------------------------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 036072 498 -----------------------------GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGL 548 (631)
Q Consensus 498 -----------------------------g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~ 548 (631)
|.-|-..+|...|..=.+.++++.+.+++++.++.+.. |..+|......=
T Consensus 403 FaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~Pe-~c~~W~kyaElE 481 (677)
T KOG1915|consen 403 FAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFSPE-NCYAWSKYAELE 481 (677)
T ss_pred HHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcChH-hhHHHHHHHHHH
Confidence 33455555555566556667777777777777766543 566666666666
Q ss_pred HHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 036072 549 ISQDRSGEAYKYLEEMLEKG-MKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGK 604 (631)
Q Consensus 549 ~~~g~~~~A~~ll~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 604 (631)
...|+.+.|..+|+-+++.. .......|.+.|.--...|.++.|..+++++.+...
T Consensus 482 ~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~ 538 (677)
T KOG1915|consen 482 TSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQ 538 (677)
T ss_pred HHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcc
Confidence 66777777777777776653 233445567777777777778888888877776554
|
|
| >KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism] | Back alignment and domain information |
|---|
Probab=99.16 E-value=1.5e-06 Score=95.41 Aligned_cols=364 Identities=11% Similarity=0.045 Sum_probs=212.2
Q ss_pred hhHHHHHHHh-hcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcc---CHHHHHHH
Q 036072 226 RPAFRFFCWA-GDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAK---ERKKAVAI 301 (631)
Q Consensus 226 ~~A~~~f~~~-~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g---~~~~A~~v 301 (631)
+.|+.+|..+ ...+...||+.. .+-..+.+.++.+.|+..|.+..+.++.+..++..|...-.... .+..+++.
T Consensus 181 ~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~l 258 (1018)
T KOG2002|consen 181 RGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQL 258 (1018)
T ss_pred HHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHHHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHH
Confidence 4577777763 346667777654 22345567788888888888877776655444444433333333 34455555
Q ss_pred HHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 036072 302 FELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT---PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKG 378 (631)
Q Consensus 302 ~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~---p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g 378 (631)
+...-... .-++.+.+.|...|.-.|++..+..+...+..... .-...|.-+.++|-..|++++|...|.+....
T Consensus 259 l~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~- 336 (1018)
T KOG2002|consen 259 LQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTENKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKA- 336 (1018)
T ss_pred HHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHcc-
Confidence 55544433 45677777788888888888888888777654311 12335777888888888888888888777654
Q ss_pred CCCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhc------------------------C
Q 036072 379 FKPDV--VAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ------------------------N 432 (631)
Q Consensus 379 ~~p~~--~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~------------------------~ 432 (631)
.++. ..+--+...+.+.|+++.+...|+...+. .|+..--..++..+... +
T Consensus 337 -~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~etm~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~~~d 413 (1018)
T KOG2002|consen 337 -DNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYETMKILGCLYAHSAKKQEKRDKASNVLGKVLEQTPVD 413 (1018)
T ss_pred -CCCCccccccchhHHHHHhchHHHHHHHHHHHHHh--CcchHHHHHHHHhHHHhhhhhhHHHHHHHHHHHHHHhccccc
Confidence 3333 33445677888888888888888887764 33332222222211110 3
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHH----HHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC---CCC-----
Q 036072 433 AAVYTCLITGFGNRRRMDIVYDLLKE----MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS---GFK----- 500 (631)
Q Consensus 433 ~~~~~~li~~~~~~g~~~~A~~l~~~----m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~----- 500 (631)
...|-.+...|-.. +...++.+|.. |...+-.+.....|.+.......|++++|...|...... ...
T Consensus 414 ~~a~l~laql~e~~-d~~~sL~~~~~A~d~L~~~~~~ip~E~LNNvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~ 492 (1018)
T KOG2002|consen 414 SEAWLELAQLLEQT-DPWASLDAYGNALDILESKGKQIPPEVLNNVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGK 492 (1018)
T ss_pred HHHHHHHHHHHHhc-ChHHHHHHHHHHHHHHHHcCCCCCHHHHHhHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccc
Confidence 34444444444443 33333555543 334455566677777777777777777777777766543 112
Q ss_pred -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 036072 501 -PTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD-NSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNK 578 (631)
Q Consensus 501 -p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~ 578 (631)
++..+-..+...+-..++.+.|.+.|..+.+.. |+- ..|--+.......+...+|...+++..+.. .-++..+..
T Consensus 493 ~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilkeh--p~YId~ylRl~~ma~~k~~~~ea~~~lk~~l~~d-~~np~arsl 569 (1018)
T KOG2002|consen 493 STNLTLKYNLARLLEELHDTEVAEEMYKSILKEH--PGYIDAYLRLGCMARDKNNLYEASLLLKDALNID-SSNPNARSL 569 (1018)
T ss_pred cchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHHC--chhHHHHHHhhHHHHhccCcHHHHHHHHHHHhcc-cCCcHHHHH
Confidence 222233334455556667777777777777652 221 112222211112356677777777776653 334445555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHH
Q 036072 579 FAADLSRAGRSYVLDELAQKMR 600 (631)
Q Consensus 579 li~~~~~~g~~~~A~~l~~~m~ 600 (631)
+...+.+...+..|.+-++.+.
T Consensus 570 ~G~~~l~k~~~~~a~k~f~~i~ 591 (1018)
T KOG2002|consen 570 LGNLHLKKSEWKPAKKKFETIL 591 (1018)
T ss_pred HHHHHHhhhhhcccccHHHHHH
Confidence 6666666666666666555443
|
|
| >PRK12370 invasion protein regulator; Provisional | Back alignment and domain information |
|---|
Probab=99.15 E-value=2.3e-08 Score=110.68 Aligned_cols=252 Identities=12% Similarity=0.042 Sum_probs=177.4
Q ss_pred ChHHHHHHHHHHhcccCCChhhHHHHHHHHH---------hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 036072 329 LPKEAQLLFDKLKHRFTPNLTTYTVLLGGWC---------RVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399 (631)
Q Consensus 329 ~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~---------~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~ 399 (631)
..++|..+|++..+..+.+...|..+..++. ..+++++|...+++..+.. +-+..++..+...+...|++
T Consensus 276 ~~~~A~~~~~~Al~ldP~~a~a~~~La~~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~~g~~ 354 (553)
T PRK12370 276 SLQQALKLLTQCVNMSPNSIAPYCALAECYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTIHSEY 354 (553)
T ss_pred HHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHccCH
Confidence 3467777777766654545556655555443 2345899999999999863 23677788888888999999
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 036072 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMK 479 (631)
Q Consensus 400 ~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~ 479 (631)
++|...|++..+. .|+ +...+..+...+...|++++|...+++..+.... +...+..++..+.
T Consensus 355 ~~A~~~~~~Al~l--~P~--------------~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~l~P~-~~~~~~~~~~~~~ 417 (553)
T PRK12370 355 IVGSLLFKQANLL--SPI--------------SADIKYYYGWNLFMAGQLEEALQTINECLKLDPT-RAAAGITKLWITY 417 (553)
T ss_pred HHHHHHHHHHHHh--CCC--------------CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-ChhhHHHHHHHHH
Confidence 9999999999885 455 4455666778888999999999999999886443 2223334444566
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 036072 480 IQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559 (631)
Q Consensus 480 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ 559 (631)
..|++++|...++++.+..-.-+...+..+..+|...|+.++|...++++..... .+....+.+...|...| ++|..
T Consensus 418 ~~g~~eeA~~~~~~~l~~~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g--~~a~~ 494 (553)
T PRK12370 418 YHTGIDDAIRLGDELRSQHLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEI-TGLIAVNLLYAEYCQNS--ERALP 494 (553)
T ss_pred hccCHHHHHHHHHHHHHhccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccc-hhHHHHHHHHHHHhccH--HHHHH
Confidence 7899999999999988754222455677788889999999999999998765421 13444555556667666 58888
Q ss_pred HHHHHHHC-CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 036072 560 YLEEMLEK-GMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGK 604 (631)
Q Consensus 560 ll~~m~~~-g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 604 (631)
.++++.+. ...+...-+ +-..+.-.|+.+.+..+ +++.+.|.
T Consensus 495 ~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 495 TIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred HHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccch
Confidence 88877653 112221122 45556667787777777 88887774
|
|
| >PF13041 PPR_2: PPR repeat family | Back alignment and domain information |
|---|
Probab=99.13 E-value=1.5e-10 Score=83.16 Aligned_cols=50 Identities=44% Similarity=0.771 Sum_probs=48.3
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh
Q 036072 381 PDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK 430 (631)
Q Consensus 381 p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~ 430 (631)
||..+||++|.+|++.|++++|.++|++|.+.|+.||..||+++|+++|+
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 89999999999999999999999999999999999999999999998875
|
|
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.12 E-value=1.9e-07 Score=100.34 Aligned_cols=296 Identities=15% Similarity=0.112 Sum_probs=199.5
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhc
Q 036072 282 FKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRV 361 (631)
Q Consensus 282 ~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~ 361 (631)
.--....+...|++++|++.++.-... +......+......+.+.|+.++|..++..+.++.+.|..-|..+..+..-.
T Consensus 7 lLY~~~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rNPdn~~Yy~~L~~~~g~~ 85 (517)
T PF12569_consen 7 LLYKNSILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRNPDNYDYYRGLEEALGLQ 85 (517)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHhhh
Confidence 333455667778888888888665443 2333444556677778888888888888888777666666666666666332
Q ss_pred C-----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHH
Q 036072 362 K-----NLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR-SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAV 435 (631)
Q Consensus 362 g-----~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~-~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 435 (631)
. +.+....+|+++...- |.......+.-.+.....+ ..+..++..+...|++ .+
T Consensus 86 ~~~~~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvP------------------sl 145 (517)
T PF12569_consen 86 LQLSDEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVP------------------SL 145 (517)
T ss_pred cccccccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCc------------------hH
Confidence 2 4666777777776642 3322222222222221122 2344455555566643 34
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHc----C----------CCCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 036072 436 YTCLITGFGNRRRMDIVYDLLKEMEER----G----------CPPDG--LTYNALIKLMKIQKMPDEAVRIYKEMVRSGF 499 (631)
Q Consensus 436 ~~~li~~~~~~g~~~~A~~l~~~m~~~----g----------~~p~~--~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 499 (631)
|+.|-..|....+.+-..+++..+... + -.|+. .++..+.+.|...|++++|++++++.+++
T Consensus 146 F~~lk~Ly~d~~K~~~i~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h-- 223 (517)
T PF12569_consen 146 FSNLKPLYKDPEKAAIIESLVEEYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH-- 223 (517)
T ss_pred HHHHHHHHcChhHHHHHHHHHHHHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--
Confidence 444555555555555555666555432 1 13444 34566677889999999999999999997
Q ss_pred CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH---
Q 036072 500 KPT-IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLD--- 575 (631)
Q Consensus 500 ~p~-~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~--- 575 (631)
.|+ +..|..-.+.|-+.|++.+|.+.++........ |...-+-.+..+.+.|++++|.+++....+.+..|....
T Consensus 224 tPt~~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD~~-DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~m 302 (517)
T PF12569_consen 224 TPTLVELYMTKARILKHAGDLKEAAEAMDEARELDLA-DRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDM 302 (517)
T ss_pred CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCChh-hHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHH
Confidence 455 778999999999999999999999999987655 777778888889999999999999999987765432211
Q ss_pred -----HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036072 576 -----YNKFAADLSRAGRSYVLDELAQKMRF 601 (631)
Q Consensus 576 -----~~~li~~~~~~g~~~~A~~l~~~m~~ 601 (631)
..-...+|.+.|++..|++.+..+..
T Consensus 303 Qc~Wf~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 303 QCMWFETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 24567889999999999887766543
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala | Back alignment and domain information |
|---|
Probab=99.10 E-value=5.7e-07 Score=96.72 Aligned_cols=297 Identities=16% Similarity=0.123 Sum_probs=208.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcC-
Q 036072 249 NSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS- 327 (631)
Q Consensus 249 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~- 327 (631)
-....++...|++++|++.++.-...-+.....+......+.+.|+.++|..+|..+++.+ +.+..-|..+..+..-.
T Consensus 8 LY~~~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~ 86 (517)
T PF12569_consen 8 LYKNSILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQL 86 (517)
T ss_pred HHHHHHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhc
Confidence 3445667889999999999988655544455678888999999999999999999999987 44555555666665222
Q ss_pred ----CChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCH-HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 036072 328 ----KLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNL-MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDA 402 (631)
Q Consensus 328 ----g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~-~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A 402 (631)
.+.+....+++++.+.++ .....-.+.-.+.....+ ..+...+..+...|+++ +|+.|-..|....+..-.
T Consensus 87 ~~~~~~~~~~~~~y~~l~~~yp-~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i 162 (517)
T PF12569_consen 87 QLSDEDVEKLLELYDELAEKYP-RSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAII 162 (517)
T ss_pred ccccccHHHHHHHHHHHHHhCc-cccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHH
Confidence 356778889998877653 222222222222222233 34555667777888653 466666666655566666
Q ss_pred HHHHHHHHHc----CC----------CCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC-
Q 036072 403 IKLFEVMKAK----GP----------SPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPD- 467 (631)
Q Consensus 403 ~~ll~~m~~~----g~----------~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~- 467 (631)
.+++...... +. .|+... .++.-+...|...|++++|+++++...+. .|+
T Consensus 163 ~~l~~~~~~~l~~~~~~~~~~~~~~~~p~~~l-------------w~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt~ 227 (517)
T PF12569_consen 163 ESLVEEYVNSLESNGSFSNGDDEEKEPPSTLL-------------WTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPTL 227 (517)
T ss_pred HHHHHHHHHhhcccCCCCCccccccCCchHHH-------------HHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCc
Confidence 6666665532 11 122211 23455677888899999999999998886 344
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH------HH
Q 036072 468 GLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDN------SY 541 (631)
Q Consensus 468 ~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~------t~ 541 (631)
+..|..-...+-+.|++++|.+.++...+.. .-|...-+-.+..+.++|++++|.+++......+..|-.. .|
T Consensus 228 ~ely~~KarilKh~G~~~~Aa~~~~~Ar~LD-~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~~~~~~L~~mQc~W 306 (517)
T PF12569_consen 228 VELYMTKARILKHAGDLKEAAEAMDEARELD-LADRYINSKCAKYLLRAGRIEEAEKTASLFTREDVDPLSNLNDMQCMW 306 (517)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHhCC-hhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCCCcccCHHHHHHHH
Confidence 6678888889999999999999999999876 3477777788888899999999999999988776533322 22
Q ss_pred --HHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 542 --TVLIGGLISQDRSGEAYKYLEEMLE 566 (631)
Q Consensus 542 --~~li~~~~~~g~~~~A~~ll~~m~~ 566 (631)
.-...+|.+.|++..|++.|....+
T Consensus 307 f~~e~a~a~~r~~~~~~ALk~~~~v~k 333 (517)
T PF12569_consen 307 FETECAEAYLRQGDYGLALKRFHAVLK 333 (517)
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 3345678899999999887766544
|
N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], []. |
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=99.09 E-value=1.4e-08 Score=97.81 Aligned_cols=236 Identities=11% Similarity=0.096 Sum_probs=185.9
Q ss_pred CcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH-HH
Q 036072 311 KAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHN-IM 389 (631)
Q Consensus 311 ~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~-~l 389 (631)
..|..--+.+.++|.+.|.+.+|++.|+.-.+. .|-+.||-.|-++|.+..+.+.|+.+|.+-.+. .|-.+||. -+
T Consensus 220 ~~dwwWk~Q~gkCylrLgm~r~AekqlqssL~q-~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g~ 296 (478)
T KOG1129|consen 220 TLDWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQ-FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLGQ 296 (478)
T ss_pred hHhHHHHHHHHHHHHHhcChhhhHHHHHHHhhc-CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhhh
Confidence 344444567888999999999999988876554 356788989999999999999999999988875 45555554 45
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHH
Q 036072 390 LEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGL 469 (631)
Q Consensus 390 i~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 469 (631)
.+.+-..++.++|.++|+...+.. |. ++.+..++...|.-.++++.|+.+++++.+.|+. +..
T Consensus 297 ARi~eam~~~~~a~~lYk~vlk~~--~~--------------nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~-spe 359 (478)
T KOG1129|consen 297 ARIHEAMEQQEDALQLYKLVLKLH--PI--------------NVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ-SPE 359 (478)
T ss_pred HHHHHHHHhHHHHHHHHHHHHhcC--Cc--------------cceeeeeeeeccccCCChHHHHHHHHHHHHhcCC-ChH
Confidence 577778899999999999887752 22 3344455566777788999999999999999987 788
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 036072 470 TYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPT--IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGG 547 (631)
Q Consensus 470 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 547 (631)
.|+.+--+|...+++|-++.-|.+....--.|+ ...|..|-......|++..|.+.|+-....+.. +...+|.|.-.
T Consensus 360 Lf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d~~-h~ealnNLavL 438 (478)
T KOG1129|consen 360 LFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSDAQ-HGEALNNLAVL 438 (478)
T ss_pred HHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccCcc-hHHHHHhHHHH
Confidence 888888888889999999999988886544444 456777777778889999999999988876443 56788888887
Q ss_pred HHHcCCHHHHHHHHHHHHHC
Q 036072 548 LISQDRSGEAYKYLEEMLEK 567 (631)
Q Consensus 548 ~~~~g~~~~A~~ll~~m~~~ 567 (631)
-.+.|++++|..+++...+.
T Consensus 439 ~~r~G~i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 439 AARSGDILGARSLLNAAKSV 458 (478)
T ss_pred HhhcCchHHHHHHHHHhhhh
Confidence 88899999999999888764
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=99.08 E-value=2.1e-07 Score=98.94 Aligned_cols=243 Identities=17% Similarity=0.203 Sum_probs=177.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-----CC-CCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCC
Q 036072 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK-----GF-KPDVV-AHNIMLEGLLKIGKRSDAIKLFEVMKAK---GPSP 416 (631)
Q Consensus 347 ~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~-----g~-~p~~~-ty~~li~~~~~~g~~~~A~~ll~~m~~~---g~~p 416 (631)
-..+...|...|...|+++.|+.+++...+. |. .|... ..+.+...|...+++++|..+|+++... ..-+
T Consensus 198 ~~~~~~~La~~y~~~g~~e~A~~l~k~Al~~l~k~~G~~hl~va~~l~~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~ 277 (508)
T KOG1840|consen 198 RLRTLRNLAEMYAVQGRLEKAEPLCKQALRILEKTSGLKHLVVASMLNILALVYRSLGKYDEAVNLYEEALTIREEVFGE 277 (508)
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHccCccCHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHhcCC
Confidence 3456677999999999999999999887754 31 22222 2334667888999999999999998752 1111
Q ss_pred cHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHH---c--CCC-CCH-HHHHHHHHHHHhcCChhHHHH
Q 036072 417 NVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEE---R--GCP-PDG-LTYNALIKLMKIQKMPDEAVR 489 (631)
Q Consensus 417 ~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~---~--g~~-p~~-~t~~~li~~~~~~g~~~~A~~ 489 (631)
+... -..+++.|...|.+.|++++|...++...+ + |.. |.. ..++.+...|+..+++++|..
T Consensus 278 ~h~~-----------va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~ 346 (508)
T KOG1840|consen 278 DHPA-----------VAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKK 346 (508)
T ss_pred CCHH-----------HHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHH
Confidence 2111 234567778889999999999888876543 1 222 122 246677778999999999999
Q ss_pred HHHHHHHC---CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----C-CCC-CHHHHHHHHHHHHHcCCHH
Q 036072 490 IYKEMVRS---GFKP----TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR-----G-CCP-DDNSYTVLIGGLISQDRSG 555 (631)
Q Consensus 490 l~~~m~~~---g~~p----~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~-----g-~~p-~~~t~~~li~~~~~~g~~~ 555 (631)
+++...+. -+.+ -..+++.|...|.+.|++++|.+++++++.. | ..+ ....++.|...|.+.+++.
T Consensus 347 l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~ 426 (508)
T KOG1840|consen 347 LLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYE 426 (508)
T ss_pred HHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccc
Confidence 99876642 1222 2467899999999999999999999998753 1 122 2557888999999999999
Q ss_pred HHHHHHHHHHH----CCC-CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036072 556 EAYKYLEEMLE----KGM-KAP-VLDYNKFAADLSRAGRSYVLDELAQKMR 600 (631)
Q Consensus 556 ~A~~ll~~m~~----~g~-~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~ 600 (631)
+|.++|.+... .|. .|+ ..+|..|...|.+.|+++.|.++.+...
T Consensus 427 ~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 427 EAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 99999987653 232 223 4569999999999999999999988764
|
|
| >KOG0495 consensus HAT repeat protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=99.07 E-value=3.3e-06 Score=88.73 Aligned_cols=346 Identities=12% Similarity=0.062 Sum_probs=229.2
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH----HHHCCC-CCHHHHHHHHHHHHHccCHHHHHHHH
Q 036072 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEE----MGEKGL-LSMETFKIAMNAFAAAKERKKAVAIF 302 (631)
Q Consensus 228 A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~----m~~~g~-~~~~~~~~li~~~~~~g~~~~A~~v~ 302 (631)
|.++++... ..++-+...|......=-.+|+.+...+++.+ +...|+ .+.+.|-.=...|-..|..--+..+.
T Consensus 425 AkkvLNkaR--e~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe~~e~agsv~TcQAIi 502 (913)
T KOG0495|consen 425 AKKVLNKAR--EIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAEACEDAGSVITCQAII 502 (913)
T ss_pred HHHHHHHHH--hhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHHHHhhcCChhhHHHHH
Confidence 566776654 34566789999999998999999999999876 445676 68889999899999999999999999
Q ss_pred HHHHhCCCCc--CHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 036072 303 ELMNKYKFKA--GVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFK 380 (631)
Q Consensus 303 ~~m~~~g~~~--~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~ 380 (631)
...+..|+.- -..||+.-...|.+.+.++-|..+|.....-++-+...|......=-..|..++...+|++.... ++
T Consensus 503 ~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~Esl~Allqkav~~-~p 581 (913)
T KOG0495|consen 503 RAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQ-CP 581 (913)
T ss_pred HHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-CC
Confidence 9998888643 35688888899999999999999999998888888889999888888889999999999999986 34
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 036072 381 PDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEME 460 (631)
Q Consensus 381 p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 460 (631)
-....|-....-+-..|++..|..++....+.... +...|-.-+..-. .+..++.|..+|.+..
T Consensus 582 kae~lwlM~ake~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~---------------en~e~eraR~llakar 645 (913)
T KOG0495|consen 582 KAEILWLMYAKEKWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEF---------------ENDELERARDLLAKAR 645 (913)
T ss_pred cchhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhh---------------ccccHHHHHHHHHHHh
Confidence 45566666777788899999999999998876433 4444544433322 3345566666665544
Q ss_pred HcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHH
Q 036072 461 ERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPT-IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDN 539 (631)
Q Consensus 461 ~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~ 539 (631)
.. .|+...|.--+..--..+..++|++++++..+. -|+ ...|..+.+.+-+.++++.|.+.|..-.+. ++-..-
T Consensus 646 ~~--sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk~--fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k~-cP~~ip 720 (913)
T KOG0495|consen 646 SI--SGTERVWMKSANLERYLDNVEEALRLLEEALKS--FPDFHKLWLMLGQIEEQMENIEMAREAYLQGTKK-CPNSIP 720 (913)
T ss_pred cc--CCcchhhHHHhHHHHHhhhHHHHHHHHHHHHHh--CCchHHHHHHHhHHHHHHHHHHHHHHHHHhcccc-CCCCch
Confidence 42 344444444444444455556666666555543 222 234445555555555555555555443332 111223
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036072 540 SYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQK 598 (631)
Q Consensus 540 t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 598 (631)
.|-.|...=.+.|.+-.|..++++..-++ +-+...|-..|..-.+.|+.+.|..++.+
T Consensus 721 LWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~lmak 778 (913)
T KOG0495|consen 721 LWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAELLMAK 778 (913)
T ss_pred HHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHHHHHH
Confidence 33333333344455555555555554443 33444455555555555555555544433
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=99.05 E-value=8.9e-07 Score=90.09 Aligned_cols=351 Identities=11% Similarity=0.018 Sum_probs=207.3
Q ss_pred hhHHHHHHHhhcCCCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 036072 226 RPAFRFFCWAGDKPGFAHN-SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFEL 304 (631)
Q Consensus 226 ~~A~~~f~~~~~~~g~~p~-~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~ 304 (631)
+.|.+++.|..+ ..|| +.-|......|...|+|+++.+--.+..+.++--..++..=..++-..|++++|+.=...
T Consensus 132 ~eAIkyY~~AI~---l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~P~Y~KAl~RRA~A~E~lg~~~eal~D~tv 208 (606)
T KOG0547|consen 132 DEAIKYYTQAIE---LCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELNPDYVKALLRRASAHEQLGKFDEALFDVTV 208 (606)
T ss_pred HHHHHHHHHHHh---cCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHhhccHHHHHHhhhH
Confidence 348888888753 3456 777888888888999998888777777766554445666666777777888877632221
Q ss_pred HH-hCCC--------------------------------CcCHHHHHHHHHHHHc--------CC---------------
Q 036072 305 MN-KYKF--------------------------------KAGVDTINCLLENLGR--------SK--------------- 328 (631)
Q Consensus 305 m~-~~g~--------------------------------~~~~~~~~~Ll~~~~~--------~g--------------- 328 (631)
.. -.|+ -|+....++....+.. .+
T Consensus 209 ~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~~~~~~~~~~ksDa~l~~~l~~l~ 288 (606)
T KOG0547|consen 209 LCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADPKPLFDNKSDKSDAALAEALEALE 288 (606)
T ss_pred HHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccccccccCCCccchhhHHHHHHHHH
Confidence 11 0011 1111111111111100 00
Q ss_pred -----ChHHHHHHHHHHhcc--cCC--C---------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036072 329 -----LPKEAQLLFDKLKHR--FTP--N---------LTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIML 390 (631)
Q Consensus 329 -----~~~~A~~l~~~m~~~--~~p--~---------~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li 390 (631)
.+..|...+.+-... ..+ + ..+...-...+.-.|+.-.|..-|+..+.....++. .|--+.
T Consensus 289 ~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a 367 (606)
T KOG0547|consen 289 KGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRA 367 (606)
T ss_pred hhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccch-HHHHHH
Confidence 001111111100000 000 0 001111111122234555555555555554222211 144455
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHH
Q 036072 391 EGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLT 470 (631)
Q Consensus 391 ~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 470 (631)
.+|....+.++..+.|.+..+.... ++.+|.--.+.+.-.+++++|..=|++....... +...
T Consensus 368 ~~y~d~~~~~~~~~~F~~A~~ldp~----------------n~dvYyHRgQm~flL~q~e~A~aDF~Kai~L~pe-~~~~ 430 (606)
T KOG0547|consen 368 AAYADENQSEKMWKDFNKAEDLDPE----------------NPDVYYHRGQMRFLLQQYEEAIADFQKAISLDPE-NAYA 430 (606)
T ss_pred HHHhhhhccHHHHHHHHHHHhcCCC----------------CCchhHhHHHHHHHHHHHHHHHHHHHHHhhcChh-hhHH
Confidence 5556666666666666665553222 3344444445555557888999888887765322 4556
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----CCCHH--HHHH
Q 036072 471 YNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC-----CPDDN--SYTV 543 (631)
Q Consensus 471 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~-----~p~~~--t~~~ 543 (631)
|.-+.-+..+.+.+++++..|++.++. ++-....|+.....+...+++++|.+.|+..++... ..+.. +...
T Consensus 431 ~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka 509 (606)
T KOG0547|consen 431 YIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKA 509 (606)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhh
Confidence 666666677888999999999999876 455678899999999999999999999999886422 12222 2222
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036072 544 LIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600 (631)
Q Consensus 544 li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 600 (631)
++..- -.+++..|.+++++..+.+ +-....|..|...-.+.|+.++|+++|++--
T Consensus 510 ~l~~q-wk~d~~~a~~Ll~KA~e~D-pkce~A~~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 510 LLVLQ-WKEDINQAENLLRKAIELD-PKCEQAYETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred Hhhhc-hhhhHHHHHHHHHHHHccC-chHHHHHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 22222 3488999999999998865 3345668999999999999999999998754
|
|
| >KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning] | Back alignment and domain information |
|---|
Probab=99.04 E-value=7.2e-06 Score=83.23 Aligned_cols=344 Identities=12% Similarity=0.066 Sum_probs=238.5
Q ss_pred HHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 036072 228 AFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNK 307 (631)
Q Consensus 228 A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~ 307 (631)
|.++|+..+ ...|+...|++.|+.=.+-+.++.|..++++..-.. |....|-.....=-++|+...|..+|+...+
T Consensus 160 aRqiferW~---~w~P~eqaW~sfI~fElRykeieraR~IYerfV~~H-P~v~~wikyarFE~k~g~~~~aR~VyerAie 235 (677)
T KOG1915|consen 160 ARQIFERWM---EWEPDEQAWLSFIKFELRYKEIERARSIYERFVLVH-PKVSNWIKYARFEEKHGNVALARSVYERAIE 235 (677)
T ss_pred HHHHHHHHH---cCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheec-ccHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 777775443 457888999999999888899999999998887554 6677777777777888899999998888876
Q ss_pred C-CC-CcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCC--hhhHHHHHHHHHhcCCHHHHHHHH--------HHHH
Q 036072 308 Y-KF-KAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPN--LTTYTVLLGGWCRVKNLMEAGRVW--------NEMI 375 (631)
Q Consensus 308 ~-g~-~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~--~~~y~~Li~~~~~~g~~~~A~~l~--------~~m~ 375 (631)
. |- ..+...+++....=.++..++.|..+|.-..+.++.+ ...|..+...=-+-|+.....+.. +.+.
T Consensus 236 ~~~~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v 315 (677)
T KOG1915|consen 236 FLGDDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEV 315 (677)
T ss_pred HhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHH
Confidence 4 21 1122334444444455677888888888777766555 456666665555666655554442 3333
Q ss_pred HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc--HHHHHHHHHH-----Hhhc-----------------
Q 036072 376 DKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN--VRSYTIMIWK-----FCKQ----------------- 431 (631)
Q Consensus 376 ~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~--~~~~~~li~~-----~~~~----------------- 431 (631)
.. -.-|-.+|--.++.--..|+.+...++|+..... +.|- ...|.-.|.. +...
T Consensus 316 ~~-np~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l 393 (677)
T KOG1915|consen 316 SK-NPYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACL 393 (677)
T ss_pred Hh-CCCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 33 2335566767777777789999999999988765 3331 1122222211 1100
Q ss_pred -----CHHHHHHH----HHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 036072 432 -----NAAVYTCL----ITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPT 502 (631)
Q Consensus 432 -----~~~~~~~l----i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 502 (631)
...+|..+ ...-.++.++..|.+++.... |.-|-..+|...|..=.+.++++.+..+|++.++.+ +-|
T Consensus 394 ~lIPHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AI--G~cPK~KlFk~YIelElqL~efDRcRkLYEkfle~~-Pe~ 470 (677)
T KOG1915|consen 394 DLIPHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAI--GKCPKDKLFKGYIELELQLREFDRCRKLYEKFLEFS-PEN 470 (677)
T ss_pred hhcCcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHh--ccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-hHh
Confidence 22233333 333345677888888887654 556788899999999899999999999999999975 446
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036072 503 IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG-CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAA 581 (631)
Q Consensus 503 ~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~ 581 (631)
..+|......=...|+.+.|..+|+-.+... .......|.+.|+.=...|.++.|..+++++++.. +...+|-++..
T Consensus 471 c~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt--~h~kvWisFA~ 548 (677)
T KOG1915|consen 471 CYAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRT--QHVKVWISFAK 548 (677)
T ss_pred hHHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhc--ccchHHHhHHH
Confidence 7788888777778999999999999988753 33346678888888889999999999999999863 33335555544
Q ss_pred H
Q 036072 582 D 582 (631)
Q Consensus 582 ~ 582 (631)
-
T Consensus 549 f 549 (677)
T KOG1915|consen 549 F 549 (677)
T ss_pred H
Confidence 3
|
|
| >KOG1129 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.98 E-value=1.1e-07 Score=91.79 Aligned_cols=232 Identities=11% Similarity=0.037 Sum_probs=164.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHh
Q 036072 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCR 360 (631)
Q Consensus 281 ~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~ 360 (631)
--+-+.++|.+.|.+.+|.+.|+..++. .|-+.||-.|-++|.+..+...|+.++.+-.+.++-|+....-+.+.+-.
T Consensus 225 Wk~Q~gkCylrLgm~r~AekqlqssL~q--~~~~dTfllLskvY~ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~ea 302 (478)
T KOG1129|consen 225 WKQQMGKCYLRLGMPRRAEKQLQSSLTQ--FPHPDTFLLLSKVYQRIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEA 302 (478)
T ss_pred HHHHHHHHHHHhcChhhhHHHHHHHhhc--CCchhHHHHHHHHHHHhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHH
Confidence 3456777888888888888888777765 56677777778888888888888888887777766676666667777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHH
Q 036072 361 VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLI 440 (631)
Q Consensus 361 ~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li 440 (631)
.++.++|.++|+...+. ...++.....+...|.-.++.+-|+.+|..+.+.|+. ++..|+.+.
T Consensus 303 m~~~~~a~~lYk~vlk~-~~~nvEaiAcia~~yfY~~~PE~AlryYRRiLqmG~~----------------speLf~Nig 365 (478)
T KOG1129|consen 303 MEQQEDALQLYKLVLKL-HPINVEAIACIAVGYFYDNNPEMALRYYRRILQMGAQ----------------SPELFCNIG 365 (478)
T ss_pred HHhHHHHHHHHHHHHhc-CCccceeeeeeeeccccCCChHHHHHHHHHHHHhcCC----------------ChHHHhhHH
Confidence 78888888888877765 2334555555666677778888888888888877765 455566666
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 036072 441 TGFGNRRRMDIVYDLLKEMEERGCPPD--GLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518 (631)
Q Consensus 441 ~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~ 518 (631)
-+|.-.+++|-++.-|.+....--.|+ ...|-.+-......|++..|.+.|+-....+ ..+...+|.|.-.-.+.|+
T Consensus 366 LCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~~d-~~h~ealnNLavL~~r~G~ 444 (478)
T KOG1129|consen 366 LCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALTSD-AQHGEALNNLAVLAARSGD 444 (478)
T ss_pred HHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhccC-cchHHHHHhHHHHHhhcCc
Confidence 667777778877777776654422232 2345555556667788888888887777654 3356677777777778888
Q ss_pred HHHHHHHHHHHHHc
Q 036072 519 YEMGRKVWDEMIRR 532 (631)
Q Consensus 519 ~~~A~~~~~~m~~~ 532 (631)
+++|..+++.....
T Consensus 445 i~~Arsll~~A~s~ 458 (478)
T KOG1129|consen 445 ILGARSLLNAAKSV 458 (478)
T ss_pred hHHHHHHHHHhhhh
Confidence 88888888877654
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.93 E-value=2e-06 Score=89.28 Aligned_cols=285 Identities=14% Similarity=0.031 Sum_probs=182.5
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHH
Q 036072 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINC 319 (631)
Q Consensus 240 g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~ 319 (631)
+...|+.....-.+-+-..+++++..++.+...+..++....+..-|.++...|+..+-..+=..+.+.- +-...+|-+
T Consensus 239 ~l~~~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~y-P~~a~sW~a 317 (611)
T KOG1173|consen 239 GLAENLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLY-PSKALSWFA 317 (611)
T ss_pred hhhhcHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHhC-CCCCcchhh
Confidence 3445556666666666677778888888887777777766666666667777777777666666666653 455667777
Q ss_pred HHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--C-CCCCHHHHHHHHHHHHHc
Q 036072 320 LLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK--G-FKPDVVAHNIMLEGLLKI 396 (631)
Q Consensus 320 Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~--g-~~p~~~ty~~li~~~~~~ 396 (631)
+..-|.-.|...+|.+.|.+...-.+.=...|-.+...|+-.+.-++|+..|....+. | ..|. --+---|.+.
T Consensus 318 Vg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~----LYlgmey~~t 393 (611)
T KOG1173|consen 318 VGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPS----LYLGMEYMRT 393 (611)
T ss_pred HHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchH----HHHHHHHHHh
Confidence 7766666677778877777754322222346777777777777777777777665543 2 1221 1122345566
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc----C--CCCCHHH
Q 036072 397 GKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEER----G--CPPDGLT 470 (631)
Q Consensus 397 g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g--~~p~~~t 470 (631)
+..+.|.++|.+... +.|+ |+.+++-+.-...+.+.+.+|..+|....+. + ..-...+
T Consensus 394 ~n~kLAe~Ff~~A~a--i~P~--------------Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~ 457 (611)
T KOG1173|consen 394 NNLKLAEKFFKQALA--IAPS--------------DPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPT 457 (611)
T ss_pred ccHHHHHHHHHHHHh--cCCC--------------cchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHH
Confidence 777777777776654 3444 3344444444455556777777777765421 0 1113445
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 036072 471 YNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGL 548 (631)
Q Consensus 471 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~ 548 (631)
++.|-.+|.+.+.+++|+..+++.+... +-+..++.++.-.|...|+++.|.+.|.+.+- +.||..+-..++..+
T Consensus 458 ~~NLGH~~Rkl~~~~eAI~~~q~aL~l~-~k~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 458 LNNLGHAYRKLNKYEEAIDYYQKALLLS-PKDASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred HHhHHHHHHHHhhHHHHHHHHHHHHHcC-CCchhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 6777777777778888888777777653 45677777777777777888888777777664 356665555555533
|
|
| >KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.90 E-value=2.9e-06 Score=86.47 Aligned_cols=342 Identities=11% Similarity=-0.012 Sum_probs=218.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENL 324 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~ 324 (631)
...+-..-.-|-++|.+++|++.|.+..+..+.-+..|.....+|...|+|+++++--...++.+ +.-+..+..-..++
T Consensus 115 A~~lK~~GN~~f~~kkY~eAIkyY~~AI~l~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~-P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 115 AAALKTKGNKFFRNKKYDEAIKYYTQAIELCPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN-PDYVKALLRRASAH 193 (606)
T ss_pred HHHHHhhhhhhhhcccHHHHHHHHHHHHhcCCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC-cHHHHHHHHHHHHH
Confidence 34455555667788999999999999988766546788888899999999999988887777754 22233444445566
Q ss_pred HcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHH--------HHH-c--CCCCCHHHHHHHHHHH
Q 036072 325 GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNE--------MID-K--GFKPDVVAHNIMLEGL 393 (631)
Q Consensus 325 ~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~--------m~~-~--g~~p~~~ty~~li~~~ 393 (631)
-..|++++|+.=. |-..++.++....-.-.+.++++. -.. + -+-|.....++....+
T Consensus 194 E~lg~~~eal~D~------------tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF 261 (606)
T KOG0547|consen 194 EQLGKFDEALFDV------------TVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSF 261 (606)
T ss_pred HhhccHHHHHHhh------------hHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhc
Confidence 6667776664322 222333333333322333333322 122 1 1334544444444333
Q ss_pred HHc--------C-----CHHHHHHHHHHHHHcCCCCc-----HHHHHHHHHHHhhc-C------HHHHHHHHHHHhccCC
Q 036072 394 LKI--------G-----KRSDAIKLFEVMKAKGPSPN-----VRSYTIMIWKFCKQ-N------AAVYTCLITGFGNRRR 448 (631)
Q Consensus 394 ~~~--------g-----~~~~A~~ll~~m~~~g~~p~-----~~~~~~li~~~~~~-~------~~~~~~li~~~~~~g~ 448 (631)
-.. + ...++.+.+..-...|..-. ..++........+. | ..+...-...+.-.|+
T Consensus 262 ~~~~~~~~~~~~~ksDa~l~~~l~~l~~~~~e~Y~~a~~~~te~~~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~ 341 (606)
T KOG0547|consen 262 HADPKPLFDNKSDKSDAALAEALEALEKGLEEGYLKAYDKATEECLGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGD 341 (606)
T ss_pred cccccccccCCCccchhhHHHHHHHHHhhCchhHHHHHHHHHHHhhhhhhhccccccchhHHHHHHHHHHhhhhhhhcCC
Confidence 210 1 12233333322221121100 00000000000000 1 1111111223344688
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 036072 449 MDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDE 528 (631)
Q Consensus 449 ~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~ 528 (631)
...|..-|+..+.....++. .|--+..+|....+.++.++.|.+..+.+ +-|..+|..=.+.+.-.+++++|..=|++
T Consensus 342 ~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~A~~ld-p~n~dvYyHRgQm~flL~q~e~A~aDF~K 419 (606)
T KOG0547|consen 342 SLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNKAEDLD-PENPDVYYHRGQMRFLLQQYEEAIADFQK 419 (606)
T ss_pred chhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHHHHhcC-CCCCchhHhHHHHHHHHHHHHHHHHHHHH
Confidence 89999999998887555443 26667778999999999999999999865 44677788888888889999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 036072 529 MIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603 (631)
Q Consensus 529 m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 603 (631)
.+..... +...|-.+.-+..+.+++++++..|++.+.+ ++-.+..|+.....+...++++.|.+.++...+..
T Consensus 420 ai~L~pe-~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk-FP~~~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE 492 (606)
T KOG0547|consen 420 AISLDPE-NAYAYIQLCCALYRQHKIAESMKTFEEAKKK-FPNCPEVYNLFAEILTDQQQFDKAVKQYDKAIELE 492 (606)
T ss_pred HhhcChh-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCCCchHHHHHHHHHhhHHhHHHHHHHHHHHHhhc
Confidence 9886433 5667777777777999999999999999887 56678899999999999999999999999876543
|
|
| >KOG1840 consensus Kinesin light chain [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.89 E-value=7.9e-07 Score=94.57 Aligned_cols=199 Identities=22% Similarity=0.188 Sum_probs=143.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHc-----CCC-C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCC-CcHH
Q 036072 353 VLLGGWCRVKNLMEAGRVWNEMIDK-----GFK-P-DVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK-----GPS-PNVR 419 (631)
Q Consensus 353 ~Li~~~~~~g~~~~A~~l~~~m~~~-----g~~-p-~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~-----g~~-p~~~ 419 (631)
.+...|...+++++|..+|+++... |-. | -..+++.|..+|++.|++++|...++...+- |.. |.
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~-- 323 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPE-- 323 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHH--
Confidence 4666777778888888888777642 211 1 2346677777888888888888877766542 111 11
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHhcCChhHHHHHHH
Q 036072 420 SYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEER---GCPPD----GLTYNALIKLMKIQKMPDEAVRIYK 492 (631)
Q Consensus 420 ~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~----~~t~~~li~~~~~~g~~~~A~~l~~ 492 (631)
-...++.++..|+..+++++|..++....+. -+.++ ..+++.|...|.+.|++++|.++|+
T Consensus 324 ------------v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k 391 (508)
T KOG1840|consen 324 ------------VAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYK 391 (508)
T ss_pred ------------HHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHH
Confidence 1233556777888899999999999865432 12222 3589999999999999999999999
Q ss_pred HHHHC----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CC-CCC-HHHHHHHHHHHHHcCCHHHHHH
Q 036072 493 EMVRS----GFK--P-TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR----GC-CPD-DNSYTVLIGGLISQDRSGEAYK 559 (631)
Q Consensus 493 ~m~~~----g~~--p-~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~-~~t~~~li~~~~~~g~~~~A~~ 559 (631)
+++.. +.+ + ....++.|...|.+.+.+.+|.++|.+.... |. .|+ ..+|..|...|...|++++|.+
T Consensus 392 ~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~ 471 (508)
T KOG1840|consen 392 KAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEE 471 (508)
T ss_pred HHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHH
Confidence 98742 122 1 2456788999999999999999999876542 32 223 4678999999999999999999
Q ss_pred HHHHHH
Q 036072 560 YLEEML 565 (631)
Q Consensus 560 ll~~m~ 565 (631)
+.+...
T Consensus 472 ~~~~~~ 477 (508)
T KOG1840|consen 472 LEEKVL 477 (508)
T ss_pred HHHHHH
Confidence 988776
|
|
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.89 E-value=7e-05 Score=79.22 Aligned_cols=142 Identities=3% Similarity=-0.043 Sum_probs=75.8
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHhhccCchhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 036072 198 MEAVLDECGINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL 277 (631)
Q Consensus 198 l~~~l~~~~~~~~~~~~~~vl~~~~~~~~~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 277 (631)
+.++|.+.+-....-.+..+.-.+-...+.|......-.+ +-.-+.+.|..+--.+-...++++|++.|......+..
T Consensus 30 ~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr--~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~~d 107 (700)
T KOG1156|consen 30 IKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLR--NDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIEKD 107 (700)
T ss_pred HHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhc--cCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcCCC
Confidence 4455665544444333333332222222335444333211 11234567777766666777888888888888777666
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhc
Q 036072 278 SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH 342 (631)
Q Consensus 278 ~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~ 342 (631)
+...+.-+.-.-++.++++........+.+.. +.....|..+..++.-.|+...|..+++...+
T Consensus 108 N~qilrDlslLQ~QmRd~~~~~~tr~~LLql~-~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~ 171 (700)
T KOG1156|consen 108 NLQILRDLSLLQIQMRDYEGYLETRNQLLQLR-PSQRASWIGFAVAQHLLGEYKMALEILEEFEK 171 (700)
T ss_pred cHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66666555555555555555555555555442 22334444555555555556666655555543
|
|
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.88 E-value=8.9e-05 Score=78.22 Aligned_cols=348 Identities=12% Similarity=0.133 Sum_probs=190.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhC------CCCcCHHHHHHH
Q 036072 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKY------KFKAGVDTINCL 320 (631)
Q Consensus 247 ~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~------g~~~~~~~~~~L 320 (631)
.|...+......+-.+.+..++++..+. ++..-+-.|..++..+++++|-+.+...... ..+.+...|.-+
T Consensus 140 IW~lyl~Fv~~~~lPets~rvyrRYLk~---~P~~~eeyie~L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~el 216 (835)
T KOG2047|consen 140 IWDLYLKFVESHGLPETSIRVYRRYLKV---APEAREEYIEYLAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLEL 216 (835)
T ss_pred chHHHHHHHHhCCChHHHHHHHHHHHhc---CHHHHHHHHHHHHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHH
Confidence 3444444444555556666666665543 3444556677777888888888777766532 124555666666
Q ss_pred HHHHHcCCChH---HHHHHHHHHhcccCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 036072 321 LENLGRSKLPK---EAQLLFDKLKHRFTPN-LTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKI 396 (631)
Q Consensus 321 l~~~~~~g~~~---~A~~l~~~m~~~~~p~-~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~ 396 (631)
.+..+++-+.- ....+++.+..+++.. -..|+.|.+.|.+.|.++.|.++|++.... ..+...|..+-++|+.-
T Consensus 217 cdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYYIr~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~F 294 (835)
T KOG2047|consen 217 CDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYYIRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQF 294 (835)
T ss_pred HHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHH
Confidence 66666554333 2334444444433322 247899999999999999999999988775 33455566666666642
Q ss_pred CC----------------------HHHHHHHHHHHHHcCC-----------CCcHHHHHHHHHH-----------Hhhc-
Q 036072 397 GK----------------------RSDAIKLFEVMKAKGP-----------SPNVRSYTIMIWK-----------FCKQ- 431 (631)
Q Consensus 397 g~----------------------~~~A~~ll~~m~~~g~-----------~p~~~~~~~li~~-----------~~~~- 431 (631)
.. ++-.+.-|+.+...+. ..++..|..-+.. |...
T Consensus 295 EE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l~e~~~~~~i~tyteAv 374 (835)
T KOG2047|consen 295 EESCVAAKMELADEESGNEEDDVDLELHMARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKLYEGNAAEQINTYTEAV 374 (835)
T ss_pred HHHHHHHHHhhhhhcccChhhhhhHHHHHHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhhhhcCChHHHHHHHHHHH
Confidence 21 1122222222222110 0011111111110 0000
Q ss_pred -----------CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 036072 432 -----------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPD---GLTYNALIKLMKIQKMPDEAVRIYKEMVRS 497 (631)
Q Consensus 432 -----------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 497 (631)
....|..+.+.|-..|+++.|..+|++..+...+-- ..+|..-...=.+..+++.|+++.+.....
T Consensus 375 ~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~v 454 (835)
T KOG2047|consen 375 KTVDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHV 454 (835)
T ss_pred HccCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcC
Confidence 334677788888889999999999988766433211 233444444445566777777777665421
Q ss_pred C----------CCC-------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-------------------------
Q 036072 498 G----------FKP-------TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC------------------------- 535 (631)
Q Consensus 498 g----------~~p-------~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~------------------------- 535 (631)
- -.| +...|..+++.--..|-++....+|+.+++..+.
T Consensus 455 P~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLriaTPqii~NyAmfLEeh~yfeesFk~Y 534 (835)
T KOG2047|consen 455 PTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIATPQIIINYAMFLEEHKYFEESFKAY 534 (835)
T ss_pred CCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 1 011 2334455555555566777777777766654332
Q ss_pred ---------CCH-HHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHH--HHHHHHHHhcCCHHHHHHHHHHHH
Q 036072 536 ---------PDD-NSYTVLIGGLIS---QDRSGEAYKYLEEMLEKGMKAPVLDY--NKFAADLSRAGRSYVLDELAQKMR 600 (631)
Q Consensus 536 ---------p~~-~t~~~li~~~~~---~g~~~~A~~ll~~m~~~g~~p~~~~~--~~li~~~~~~g~~~~A~~l~~~m~ 600 (631)
|++ ..|+..+.-+.+ .-..+.|..+|++.++ |.+|...-+ -.....=.+.|....|+.++++..
T Consensus 535 ErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat 613 (835)
T KOG2047|consen 535 ERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERAT 613 (835)
T ss_pred HcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 232 345555544443 2345677777777777 445443322 222222234566666777777654
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.88 E-value=9.3e-05 Score=74.23 Aligned_cols=294 Identities=13% Similarity=0.016 Sum_probs=196.2
Q ss_pred HHHHHccCHHHHHHHHHHHHhC-CCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHH
Q 036072 287 NAFAAAKERKKAVAIFELMNKY-KFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLM 365 (631)
Q Consensus 287 ~~~~~~g~~~~A~~v~~~m~~~-g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~ 365 (631)
.+.+..++...|...+-.+... -++-++.....+.+++...|+.++|...|++...-.+.++.......-.+.+.|+++
T Consensus 204 ~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e 283 (564)
T KOG1174|consen 204 LAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCE 283 (564)
T ss_pred HHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHh
Confidence 3334445555666665555433 346678888889999999999999999999877543334444444445556788888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhc
Q 036072 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGN 445 (631)
Q Consensus 366 ~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~ 445 (631)
....+...+.... .-+...|-.-...+...++++.|+.+-++..+. .|. . ...|-.-...+..
T Consensus 284 ~~~~L~~~Lf~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~--~~r--~------------~~alilKG~lL~~ 346 (564)
T KOG1174|consen 284 QDSALMDYLFAKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDS--EPR--N------------HEALILKGRLLIA 346 (564)
T ss_pred hHHHHHHHHHhhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhcc--Ccc--c------------chHHHhccHHHHh
Confidence 8888888877642 122333333344455677888888888877653 222 1 1112122345666
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH-HHHHH-cCCHHHHH
Q 036072 446 RRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIM-KSYFQ-TGNYEMGR 523 (631)
Q Consensus 446 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li-~~~~~-~g~~~~A~ 523 (631)
.|++++|.--|+...... +-+...|..|+..|...|.+.+|..+-+...+. +..+..+...+. ..|.- .-.-++|.
T Consensus 347 ~~R~~~A~IaFR~Aq~La-p~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAK 424 (564)
T KOG1174|consen 347 LERHTQAVIAFRTAQMLA-PYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAK 424 (564)
T ss_pred ccchHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHH
Confidence 788999988888876542 236788999999999999999888877666553 234555554442 33332 22346788
Q ss_pred HHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036072 524 KVWDEMIRRGCCPD-DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFS 602 (631)
Q Consensus 524 ~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 602 (631)
++++.-... .|+ ....+.+...|...|..++++.+++..+. ..||....+.|.+.+...+.+.+|++.|......
T Consensus 425 kf~ek~L~~--~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 425 KFAEKSLKI--NPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--IFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred HHHHhhhcc--CCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--hccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 887776654 344 33456666777788999999999888776 3678888888999998888888888888776554
Q ss_pred C
Q 036072 603 G 603 (631)
Q Consensus 603 g 603 (631)
+
T Consensus 501 d 501 (564)
T KOG1174|consen 501 D 501 (564)
T ss_pred C
Confidence 4
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.84 E-value=2.4e-05 Score=81.78 Aligned_cols=202 Identities=10% Similarity=-0.013 Sum_probs=122.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--C-HHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHH--
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLL--S-METFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINC-- 319 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~--~-~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~-- 319 (631)
...|..+...+...|+.+.+...+......... + .+........+...|++++|.+.++...+.. +.+...+..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhH
Confidence 345555666666667777766666665544332 2 2333344455667788888888888877653 334444432
Q ss_pred -HHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 036072 320 -LLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGK 398 (631)
Q Consensus 320 -Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~ 398 (631)
........+....+.+.+.......+........+...+...|++++|...+++..+.. +.+...+..+...+...|+
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~-p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN-PDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCC
Confidence 11112223555555555554222233333445556677788888888888888888763 3345667777788888888
Q ss_pred HHHHHHHHHHHHHcCCC-CcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHH
Q 036072 399 RSDAIKLFEVMKAKGPS-PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEE 461 (631)
Q Consensus 399 ~~~A~~ll~~m~~~g~~-p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 461 (631)
+++|..+++........ ++.. ...|..+...+...|++++|..++++...
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~-------------~~~~~~la~~~~~~G~~~~A~~~~~~~~~ 214 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLR-------------GHNWWHLALFYLERGDYEAALAIYDTHIA 214 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchh-------------HHHHHHHHHHHHHCCCHHHHHHHHHHHhc
Confidence 88888888877654221 1111 12234456667777888888888887653
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.84 E-value=8.8e-06 Score=79.71 Aligned_cols=91 Identities=13% Similarity=0.173 Sum_probs=50.1
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHH-HHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhc
Q 036072 509 IMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTV-LIGGLISQDRSGEAYKYLEEMLEKGMKAPVLD-YNKFAADLSRA 586 (631)
Q Consensus 509 Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~-li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~-~~~li~~~~~~ 586 (631)
+.++++..|++.+|+++|-.+....++ |..+|.. |.++|.+.++++-|++++-++... .+..+ ...+.+.|.++
T Consensus 399 ~AQAk~atgny~eaEelf~~is~~~ik-n~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~---~e~fsLLqlIAn~CYk~ 474 (557)
T KOG3785|consen 399 LAQAKLATGNYVEAEELFIRISGPEIK-NKILYKSMLARCYIRNKKPQLAWDMMLKTNTP---SERFSLLQLIANDCYKA 474 (557)
T ss_pred HHHHHHHhcChHHHHHHHhhhcChhhh-hhHHHHHHHHHHHHhcCCchHHHHHHHhcCCc---hhHHHHHHHHHHHHHHH
Confidence 455666667777777776655544333 4445443 345566666666666555433221 12222 33445666667
Q ss_pred CCHHHHHHHHHHHHhcC
Q 036072 587 GRSYVLDELAQKMRFSG 603 (631)
Q Consensus 587 g~~~~A~~l~~~m~~~g 603 (631)
+.+--|.+.|+.++..+
T Consensus 475 ~eFyyaaKAFd~lE~lD 491 (557)
T KOG3785|consen 475 NEFYYAAKAFDELEILD 491 (557)
T ss_pred HHHHHHHHhhhHHHccC
Confidence 76666666666665544
|
|
| >KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.82 E-value=8.3e-06 Score=84.74 Aligned_cols=281 Identities=12% Similarity=0.051 Sum_probs=220.9
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHH
Q 036072 278 SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357 (631)
Q Consensus 278 ~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~ 357 (631)
+......-...+...+++.+..++++...+.. ++....+..=|.++...|+..+-..+=.++.+..|....+|.++.-.
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~d-pfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~yP~~a~sW~aVg~Y 321 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKD-PFHLPCLPLHIACLYELGKSNKLFLLSHKLVDLYPSKALSWFAVGCY 321 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhC-CCCcchHHHHHHHHHHhcccchHHHHHHHHHHhCCCCCcchhhHHHH
Confidence 55566666777888899999999999998875 66667777777788899998888888888888888899999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CC-CCcHHHHHHHHHHHhhcCHH
Q 036072 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK--GP-SPNVRSYTIMIWKFCKQNAA 434 (631)
Q Consensus 358 ~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~--g~-~p~~~~~~~li~~~~~~~~~ 434 (631)
|.-.|...+|.+.|.+.....- .-...|-.+...|.-.|..|+|+..+...-+. |. .|...
T Consensus 322 Yl~i~k~seARry~SKat~lD~-~fgpaWl~fghsfa~e~EhdQAmaaY~tAarl~~G~hlP~LY--------------- 385 (611)
T KOG1173|consen 322 YLMIGKYSEARRYFSKATTLDP-TFGPAWLAFGHSFAGEGEHDQAMAAYFTAARLMPGCHLPSLY--------------- 385 (611)
T ss_pred HHHhcCcHHHHHHHHHHhhcCc-cccHHHHHHhHHhhhcchHHHHHHHHHHHHHhccCCcchHHH---------------
Confidence 9999999999999998775421 12456888889999999999999988766542 22 23221
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----C-CC-CCHHHHHH
Q 036072 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS----G-FK-PTIHTYNM 508 (631)
Q Consensus 435 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~----g-~~-p~~~t~~~ 508 (631)
+.--|.+.+..+.|.++|.+.... .+-|+..++-+--.....+.+.+|..+|+..... + -+ -...+++.
T Consensus 386 ----lgmey~~t~n~kLAe~Ff~~A~ai-~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~N 460 (611)
T KOG1173|consen 386 ----LGMEYMRTNNLKLAEKFFKQALAI-APSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNN 460 (611)
T ss_pred ----HHHHHHHhccHHHHHHHHHHHHhc-CCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHh
Confidence 223466778999999999987765 3346778888777777889999999999887731 1 11 24567899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036072 509 IMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADL 583 (631)
Q Consensus 509 Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~ 583 (631)
|..+|.+.+.+++|+..++..+....+ |..+|.++.-.|...|+++.|.+.|.+.+. +.|+..+-..++..+
T Consensus 461 LGH~~Rkl~~~~eAI~~~q~aL~l~~k-~~~~~asig~iy~llgnld~Aid~fhKaL~--l~p~n~~~~~lL~~a 532 (611)
T KOG1173|consen 461 LGHAYRKLNKYEEAIDYYQKALLLSPK-DASTHASIGYIYHLLGNLDKAIDHFHKALA--LKPDNIFISELLKLA 532 (611)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHcCCC-chhHHHHHHHHHHHhcChHHHHHHHHHHHh--cCCccHHHHHHHHHH
Confidence 999999999999999999999886444 888999999889999999999999999876 467766655555533
|
|
| >KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.81 E-value=3.6e-05 Score=77.08 Aligned_cols=285 Identities=9% Similarity=-0.006 Sum_probs=186.5
Q ss_pred hHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 036072 227 PAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMN 306 (631)
Q Consensus 227 ~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~ 306 (631)
.|...|..+....-++-|+.....+.+.+...|+..+|+..|+.....++.+..........+...|+.+....+...+.
T Consensus 214 ~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~MD~Ya~LL~~eg~~e~~~~L~~~Lf 293 (564)
T KOG1174|consen 214 DASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAMDLYAVLLGQEGGCEQDSALMDYLF 293 (564)
T ss_pred hhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhHHHHHHHHHhccCHhhHHHHHHHHH
Confidence 36677776666667788888999999999999999999999999887776443333333344556777777777776665
Q ss_pred hCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 036072 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH 386 (631)
Q Consensus 307 ~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty 386 (631)
... +-+...|..-.......+++..|+.+-++...-.+-++..|-.-...+...++.++|.-.|+...... +-+...|
T Consensus 294 ~~~-~~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~~r~~~alilKG~lL~~~~R~~~A~IaFR~Aq~La-p~rL~~Y 371 (564)
T KOG1174|consen 294 AKV-KYTASHWFVHAQLLYDEKKFERALNFVEKCIDSEPRNHEALILKGRLLIALERHTQAVIAFRTAQMLA-PYRLEIY 371 (564)
T ss_pred hhh-hcchhhhhhhhhhhhhhhhHHHHHHHHHHHhccCcccchHHHhccHHHHhccchHHHHHHHHHHHhcc-hhhHHHH
Confidence 532 23334444444455566788888888777655444456666666677888899999999998887642 2467889
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHh-ccCCHHHHHHHHHHHHHcCCC
Q 036072 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFG-NRRRMDIVYDLLKEMEERGCP 465 (631)
Q Consensus 387 ~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~-~~g~~~~A~~l~~~m~~~g~~ 465 (631)
..|+.+|...|++.+|.-+-+...+. +..+..+.+.+ . + ..+. .-.--++|.++++.-.. +.
T Consensus 372 ~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~-g-----------~--~V~~~dp~~rEKAKkf~ek~L~--~~ 434 (564)
T KOG1174|consen 372 RGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLF-G-----------T--LVLFPDPRMREKAKKFAEKSLK--IN 434 (564)
T ss_pred HHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhh-c-----------c--eeeccCchhHHHHHHHHHhhhc--cC
Confidence 99999999999999888776655432 11122222111 0 0 0000 11123566666655433 23
Q ss_pred CCH-HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036072 466 PDG-LTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532 (631)
Q Consensus 466 p~~-~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~ 532 (631)
|+- ...+.+...+...|..+.++.++++.... .||....+.|.+.+...+.+.+|+..|......
T Consensus 435 P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~--~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~ 500 (564)
T KOG1174|consen 435 PIYTPAVNLIAELCQVEGPTKDIIKLLEKHLII--FPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQ 500 (564)
T ss_pred CccHHHHHHHHHHHHhhCccchHHHHHHHHHhh--ccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 442 24455566677777777777777776653 567777777777777777777777777766654
|
|
| >cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals | Back alignment and domain information |
|---|
Probab=98.80 E-value=2.4e-05 Score=81.86 Aligned_cols=303 Identities=12% Similarity=-0.013 Sum_probs=187.9
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhCCC-CcCH-HHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHH
Q 036072 279 METFKIAMNAFAAAKERKKAVAIFELMNKYKF-KAGV-DTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLG 356 (631)
Q Consensus 279 ~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~-~~~~-~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~ 356 (631)
...|..+...+...|+.+.+.+.+....+... ..+. .........+...|++++|..++++..+..+.+...+.. ..
T Consensus 6 ~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~-~~ 84 (355)
T cd05804 6 ALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDDYPRDLLALKL-HL 84 (355)
T ss_pred HHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHH-hH
Confidence 34566666777777888887777766654321 2222 222222345567899999999999988766666656553 22
Q ss_pred HHHh----cCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhc
Q 036072 357 GWCR----VKNLMEAGRVWNEMIDKGFKPD-VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ 431 (631)
Q Consensus 357 ~~~~----~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~ 431 (631)
.+.. .+..+.+.+.+.. .....|+ ......+...+...|++++|.+.+++..+.. |+
T Consensus 85 ~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~--p~-------------- 146 (355)
T cd05804 85 GAFGLGDFSGMRDHVARVLPL--WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELN--PD-------------- 146 (355)
T ss_pred HHHHhcccccCchhHHHHHhc--cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--CC--------------
Confidence 3333 4455555555554 1222333 3344456678889999999999999998853 44
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC-CCCH--HHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHH-
Q 036072 432 NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC-PPDG--LTYNALIKLMKIQKMPDEAVRIYKEMVRSGF-KPTIHTY- 506 (631)
Q Consensus 432 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~--~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~- 506 (631)
+...+..+...|...|++++|..++++..+... .++. ..|..+...+...|++++|..+++++..... .+.....
T Consensus 147 ~~~~~~~la~i~~~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~ 226 (355)
T cd05804 147 DAWAVHAVAHVLEMQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLL 226 (355)
T ss_pred CcHHHHHHHHHHHHcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHh
Confidence 334456677888899999999999998876532 2232 3455778889999999999999999865322 1222211
Q ss_pred H--HHHHHHHHcCCHHHHHHHHHHHHH---cCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC--------C
Q 036072 507 N--MIMKSYFQTGNYEMGRKVWDEMIR---RGC--CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMK--------A 571 (631)
Q Consensus 507 ~--~Li~~~~~~g~~~~A~~~~~~m~~---~g~--~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~--------p 571 (631)
+ .++.-+...|....+.+. +.+.. ... ............++...|+.++|..+++.+...... .
T Consensus 227 ~~~~~l~~~~~~g~~~~~~~w-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~ 305 (355)
T cd05804 227 DAASLLWRLELAGHVDVGDRW-EDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPAR 305 (355)
T ss_pred hHHHHHHHHHhcCCCChHHHH-HHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHH
Confidence 1 233333444543333222 22211 111 111122235666778899999999999998763222 0
Q ss_pred CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036072 572 PVLDYNKFAADLSRAGRSYVLDELAQKMRF 601 (631)
Q Consensus 572 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 601 (631)
..........++.+.|+.++|.+.+.....
T Consensus 306 ~~~~~~l~A~~~~~~g~~~~A~~~L~~al~ 335 (355)
T cd05804 306 DVGLPLAEALYAFAEGNYATALELLGPVRD 335 (355)
T ss_pred hhhHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 122233444556789999999998887654
|
A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure. |
| >KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics] | Back alignment and domain information |
|---|
Probab=98.80 E-value=0.00013 Score=77.36 Aligned_cols=329 Identities=16% Similarity=0.091 Sum_probs=222.3
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHH
Q 036072 254 ILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEA 333 (631)
Q Consensus 254 ~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A 333 (631)
.+...|+-++|......-...++-+...|+.+.-.+....++++|++.|......+ +-|...+..|--.-++.++++..
T Consensus 50 ~L~~lg~~~ea~~~vr~glr~d~~S~vCwHv~gl~~R~dK~Y~eaiKcy~nAl~~~-~dN~qilrDlslLQ~QmRd~~~~ 128 (700)
T KOG1156|consen 50 TLNCLGKKEEAYELVRLGLRNDLKSHVCWHVLGLLQRSDKKYDEAIKCYRNALKIE-KDNLQILRDLSLLQIQMRDYEGY 128 (700)
T ss_pred hhhcccchHHHHHHHHHHhccCcccchhHHHHHHHHhhhhhHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHHHhhhhH
Confidence 35567899999999988888777788889999989999999999999999999886 66778888777777778888887
Q ss_pred HHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHH------HHHHcCCHHHHHHHH
Q 036072 334 QLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKG-FKPDVVAHNIMLE------GLLKIGKRSDAIKLF 406 (631)
Q Consensus 334 ~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~ty~~li~------~~~~~g~~~~A~~ll 406 (631)
...-..+.+-.+.....|..+..++.-.|++..|..++++..+.. -.|+...|..... ...+.|..++|.+.+
T Consensus 129 ~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L 208 (700)
T KOG1156|consen 129 LETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHL 208 (700)
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHH
Confidence 777777665545567789999999999999999999999998764 3566666654332 345678888888777
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHhcCChh
Q 036072 407 EVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPD 485 (631)
Q Consensus 407 ~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~-~~~~~g~~~ 485 (631)
..-... ..|... .-..-...+.+.+++++|..++..+... .||..-|...+. ++.+-.+.-
T Consensus 209 ~~~e~~--i~Dkla--------------~~e~ka~l~~kl~~lEeA~~~y~~Ll~r--nPdn~~Yy~~l~~~lgk~~d~~ 270 (700)
T KOG1156|consen 209 LDNEKQ--IVDKLA--------------FEETKADLLMKLGQLEEAVKVYRRLLER--NPDNLDYYEGLEKALGKIKDML 270 (700)
T ss_pred HhhhhH--HHHHHH--------------HhhhHHHHHHHHhhHHhHHHHHHHHHhh--CchhHHHHHHHHHHHHHHhhhH
Confidence 654332 111111 1122344556667777777777777665 244444433332 221111111
Q ss_pred HHH-HHH----------------------------------HHHHHCCC-------------------------------
Q 036072 486 EAV-RIY----------------------------------KEMVRSGF------------------------------- 499 (631)
Q Consensus 486 ~A~-~l~----------------------------------~~m~~~g~------------------------------- 499 (631)
++. .+| ..+.+.|+
T Consensus 271 ~~lk~ly~~ls~~y~r~e~p~Rlplsvl~~eel~~~vdkyL~~~l~Kg~p~vf~dl~SLyk~p~k~~~le~Lvt~y~~~L 350 (700)
T KOG1156|consen 271 EALKALYAILSEKYPRHECPRRLPLSVLNGEELKEIVDKYLRPLLSKGVPSVFKDLRSLYKDPEKVAFLEKLVTSYQHSL 350 (700)
T ss_pred HHHHHHHHHHhhcCcccccchhccHHHhCcchhHHHHHHHHHHHhhcCCCchhhhhHHHHhchhHhHHHHHHHHHHHhhc
Confidence 111 111 11222221
Q ss_pred ---------------CCCH--HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHH
Q 036072 500 ---------------KPTI--HTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD-NSYTVLIGGLISQDRSGEAYKYL 561 (631)
Q Consensus 500 ---------------~p~~--~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~-~t~~~li~~~~~~g~~~~A~~ll 561 (631)
+|+. .|+..++..|-+.|+++.|..+.+..+.+ .|+. ..|..=.+.+...|++++|..++
T Consensus 351 ~~~~~f~~~D~~~~E~PttllWt~y~laqh~D~~g~~~~A~~yId~AIdH--TPTliEly~~KaRI~kH~G~l~eAa~~l 428 (700)
T KOG1156|consen 351 SGTGMFNFLDDGKQEPPTTLLWTLYFLAQHYDKLGDYEVALEYIDLAIDH--TPTLIELYLVKARIFKHAGLLDEAAAWL 428 (700)
T ss_pred ccccCCCcccccccCCchHHHHHHHHHHHHHHHcccHHHHHHHHHHHhcc--CchHHHHHHHHHHHHHhcCChHHHHHHH
Confidence 2332 33455667777888888888888887764 3442 23444446677788888888888
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 036072 562 EEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGK 604 (631)
Q Consensus 562 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 604 (631)
++..+.+ .+|...=..-+.-..++.+.++|.+++.+....|.
T Consensus 429 ~ea~elD-~aDR~INsKcAKYmLrAn~i~eA~~~~skFTr~~~ 470 (700)
T KOG1156|consen 429 DEAQELD-TADRAINSKCAKYMLRANEIEEAEEVLSKFTREGF 470 (700)
T ss_pred HHHHhcc-chhHHHHHHHHHHHHHccccHHHHHHHHHhhhccc
Confidence 8888775 55666555677777888888888888888877764
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.79 E-value=9.8e-06 Score=82.27 Aligned_cols=117 Identities=14% Similarity=-0.074 Sum_probs=62.4
Q ss_pred CChhHHHHHHHHHHHCCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHH
Q 036072 259 RQFETMVSMLEEMGEKGLLS----METFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQ 334 (631)
Q Consensus 259 g~~~~A~~l~~~m~~~g~~~----~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~ 334 (631)
++.+.++.-+.++......+ ...|..+...+...|+.++|...|+...+.. +.+...|+.+...+...|++++|.
T Consensus 40 ~~~e~~i~~~~~~l~~~~~~~~~~a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~ 118 (296)
T PRK11189 40 LQQEVILARLNQILASRDLTDEERAQLHYERGVLYDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAY 118 (296)
T ss_pred hHHHHHHHHHHHHHccccCCcHhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 34455555555555433321 2235555555555566666666665555543 334555555555555566666666
Q ss_pred HHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036072 335 LLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMID 376 (631)
Q Consensus 335 ~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~ 376 (631)
..|+...+..+.+..+|..+...+...|++++|.+.|+...+
T Consensus 119 ~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~~~~~~al~ 160 (296)
T PRK11189 119 EAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQDDLLAFYQ 160 (296)
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555555544333445555555555555566666555555554
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.74 E-value=5.4e-05 Score=79.25 Aligned_cols=371 Identities=12% Similarity=0.114 Sum_probs=219.5
Q ss_pred HHhhccCch--hHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCH
Q 036072 218 LERFRHARR--PAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKER 295 (631)
Q Consensus 218 l~~~~~~~~--~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~ 295 (631)
+.+..+..+ .|.+....+.. +++-|...+..=+-++.+.++|++|+.+.+.-..... ...-+--=..+..+.++.
T Consensus 19 ln~~~~~~e~e~a~k~~~Kil~--~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~~~-~~~~~fEKAYc~Yrlnk~ 95 (652)
T KOG2376|consen 19 LNRHGKNGEYEEAVKTANKILS--IVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGALLV-INSFFFEKAYCEYRLNKL 95 (652)
T ss_pred HHHhccchHHHHHHHHHHHHHh--cCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchhhh-cchhhHHHHHHHHHcccH
Confidence 444455443 36666655532 2233455566666677888889998855543221111 111111223344567889
Q ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCC----------------------------C
Q 036072 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTP----------------------------N 347 (631)
Q Consensus 296 ~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p----------------------------~ 347 (631)
++|+..++-.. +.+..+...-...+.+.|++++|..+|+.+.+...+ .
T Consensus 96 Dealk~~~~~~----~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l~~~~~q~v~~v~ 171 (652)
T KOG2376|consen 96 DEALKTLKGLD----RLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAALQVQLLQSVPEVP 171 (652)
T ss_pred HHHHHHHhccc----ccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhhhHHHHHhccCCC
Confidence 99988887222 223335555556677899999999999998432111 1
Q ss_pred hhhHHHHH---HHHHhcCCHHHHHHHHHHHHHcC-------------CCCCHH-HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036072 348 LTTYTVLL---GGWCRVKNLMEAGRVWNEMIDKG-------------FKPDVV-AHNIMLEGLLKIGKRSDAIKLFEVMK 410 (631)
Q Consensus 348 ~~~y~~Li---~~~~~~g~~~~A~~l~~~m~~~g-------------~~p~~~-ty~~li~~~~~~g~~~~A~~ll~~m~ 410 (631)
..+|..+. -.+...|++.+|+++++...+.+ ++-+.. .-..|...+-..|+.++|.+++....
T Consensus 172 e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~~~i 251 (652)
T KOG2376|consen 172 EDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYVDII 251 (652)
T ss_pred cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHH
Confidence 11333333 34556799999999998883211 111111 22334556677899999999999888
Q ss_pred HcCCCCcHHHHHHHHHH---Hhhc--------------------------------------------------------
Q 036072 411 AKGPSPNVRSYTIMIWK---FCKQ-------------------------------------------------------- 431 (631)
Q Consensus 411 ~~g~~p~~~~~~~li~~---~~~~-------------------------------------------------------- 431 (631)
+... +|.....+..+- +...
T Consensus 252 ~~~~-~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~~q~r~~~ 330 (652)
T KOG2376|consen 252 KRNP-ADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKMDQVRELS 330 (652)
T ss_pred HhcC-CCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHH
Confidence 7643 222111111100 0000
Q ss_pred -------CHHHHHHHHHHHhc--cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHH--------HH
Q 036072 432 -------NAAVYTCLITGFGN--RRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYK--------EM 494 (631)
Q Consensus 432 -------~~~~~~~li~~~~~--~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~--------~m 494 (631)
....+..++..+.+ ...+..+.+++...-+....-.....-.+++.....|+++.|.+++. .+
T Consensus 331 a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~ 410 (652)
T KOG2376|consen 331 ASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADGHPEKSKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSI 410 (652)
T ss_pred HhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhccCCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhh
Confidence 22233333333222 12355666666666554333234556667777888999999999998 55
Q ss_pred HHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--CCCCCHHH----HHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 036072 495 VRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR--GCCPDDNS----YTVLIGGLISQDRSGEAYKYLEEMLEKG 568 (631)
Q Consensus 495 ~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~--g~~p~~~t----~~~li~~~~~~g~~~~A~~ll~~m~~~g 568 (631)
.+.+..| .+..+++..|.+.++-+.|..++.+.+.. .-.+.... +..+...-.+.|+.++|..+++++.+..
T Consensus 411 ~~~~~~P--~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~n 488 (652)
T KOG2376|consen 411 LEAKHLP--GTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKFN 488 (652)
T ss_pred hhhccCh--hHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHhC
Confidence 5555555 45566777788888777777777776642 11122233 3333334447899999999999999865
Q ss_pred CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036072 569 MKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600 (631)
Q Consensus 569 ~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 600 (631)
++|..+...++.+|++. +.+.|+.+-+++.
T Consensus 489 -~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 489 -PNDTDLLVQLVTAYARL-DPEKAESLSKKLP 518 (652)
T ss_pred -CchHHHHHHHHHHHHhc-CHHHHHHHhhcCC
Confidence 67888899999999876 4677777766654
|
|
| >PRK11189 lipoprotein NlpI; Provisional | Back alignment and domain information |
|---|
Probab=98.71 E-value=1.3e-05 Score=81.31 Aligned_cols=203 Identities=11% Similarity=-0.074 Sum_probs=143.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENL 324 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~ 324 (631)
...|..+-..+.+.|++++|...|++..+..+.+..+|+.+...+...|++++|++.|+...+.. +-+..+|..+..++
T Consensus 64 a~~~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l 142 (296)
T PRK11189 64 AQLHYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELD-PTYNYAYLNRGIAL 142 (296)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 35677778889999999999999999999988889999999999999999999999999999875 44577888888899
Q ss_pred HcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 036072 325 GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIK 404 (631)
Q Consensus 325 ~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ 404 (631)
...|++++|.+.|+...+..+.+.. .......+...++.++|...|.+.... ..++...+ . ......|+.+.+ +
T Consensus 143 ~~~g~~~eA~~~~~~al~~~P~~~~-~~~~~~l~~~~~~~~~A~~~l~~~~~~-~~~~~~~~-~--~~~~~lg~~~~~-~ 216 (296)
T PRK11189 143 YYGGRYELAQDDLLAFYQDDPNDPY-RALWLYLAESKLDPKQAKENLKQRYEK-LDKEQWGW-N--IVEFYLGKISEE-T 216 (296)
T ss_pred HHCCCHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHccCCHHHHHHHHHHHHhh-CCccccHH-H--HHHHHccCCCHH-H
Confidence 9999999999999998765444432 222233344567899999999776543 23333222 2 223345666554 3
Q ss_pred HHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 036072 405 LFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERG 463 (631)
Q Consensus 405 ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 463 (631)
.+..+.+. +.-+... . .....+|..+...+.+.|++++|...|++..+..
T Consensus 217 ~~~~~~~~-~~~~~~l-~-------~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 217 LMERLKAG-ATDNTEL-A-------ERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHHHHhc-CCCcHHH-H-------HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 55555432 1111110 0 0023456667777778888888888888777654
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.64 E-value=0.00012 Score=79.05 Aligned_cols=354 Identities=14% Similarity=0.058 Sum_probs=206.1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCc-CHHHHHHHH
Q 036072 243 HNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKA-GVDTINCLL 321 (631)
Q Consensus 243 p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~-~~~~~~~Ll 321 (631)
-|...|..+.=++.+.|+++.+.+.|++....-....+.|..+-..|...|.-..|+.+++......-.| +...+-..-
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lmas 400 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMAS 400 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHHH
Confidence 3456666666666666666666666666554433344555555556666666555555555544332112 222222222
Q ss_pred HHHHc-CCChH--------------------------------------------------HHHHHHHHHhcccCCChhh
Q 036072 322 ENLGR-SKLPK--------------------------------------------------EAQLLFDKLKHRFTPNLTT 350 (631)
Q Consensus 322 ~~~~~-~g~~~--------------------------------------------------~A~~l~~~m~~~~~p~~~~ 350 (631)
..|.+ .+..+ ++.+.+++..+..+-|...
T Consensus 401 klc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~~ 480 (799)
T KOG4162|consen 401 KLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPLV 480 (799)
T ss_pred HHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCchH
Confidence 22221 12222 3333333333322234444
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCC--------------
Q 036072 351 YTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK-GPS-------------- 415 (631)
Q Consensus 351 y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~-g~~-------------- 415 (631)
..-+.--|+..++++.|.+..++..+.+-.-+...|..+.-.+...+++.+|+.+.+..... |..
T Consensus 481 if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~~ 560 (799)
T KOG4162|consen 481 IFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELTF 560 (799)
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhhc
Confidence 44444556677788888888888777655567777877777777788888888877765543 110
Q ss_pred ----CcHHHHHHHHHHHhhcCHHH-----HHHHHHHHh----ccCCHHHHHHHHHHH--------HHcC---------C-
Q 036072 416 ----PNVRSYTIMIWKFCKQNAAV-----YTCLITGFG----NRRRMDIVYDLLKEM--------EERG---------C- 464 (631)
Q Consensus 416 ----p~~~~~~~li~~~~~~~~~~-----~~~li~~~~----~~g~~~~A~~l~~~m--------~~~g---------~- 464 (631)
-...|...++..+-.. ..+ -..+...-. ...+..+|.+....+ ...| +
T Consensus 561 ~~~e~~l~t~~~~L~~we~~-~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~ 639 (799)
T KOG4162|consen 561 NDREEALDTCIHKLALWEAE-YGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVL 639 (799)
T ss_pred ccHHHHHHHHHHHHHHHHhh-hhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCccccc
Confidence 0011111111110000 000 000000000 000111111111111 0011 1
Q ss_pred -CCC------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 036072 465 -PPD------GLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537 (631)
Q Consensus 465 -~p~------~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 537 (631)
.|+ ...|......+.+.+..++|...+.+..... .-....|......+...|.+++|.+.|......+.. +
T Consensus 640 ~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~-h 717 (799)
T KOG4162|consen 640 PGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPD-H 717 (799)
T ss_pred CCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCC-C
Confidence 122 2246666778889999999998888887653 445677777778888999999999999988875433 5
Q ss_pred HHHHHHHHHHHHHcCCHHHHHH--HHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036072 538 DNSYTVLIGGLISQDRSGEAYK--YLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600 (631)
Q Consensus 538 ~~t~~~li~~~~~~g~~~~A~~--ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 600 (631)
+.+..++...+.+.|+..-|.. ++.++.+.+ +-+...|-.+...+-+.|+.+.|.+.|.-.-
T Consensus 718 v~s~~Ala~~lle~G~~~la~~~~~L~dalr~d-p~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~ 781 (799)
T KOG4162|consen 718 VPSMTALAELLLELGSPRLAEKRSLLSDALRLD-PLNHEAWYYLGEVFKKLGDSKQAAECFQAAL 781 (799)
T ss_pred cHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHccchHHHHHHHHHHH
Confidence 6778889999999999888887 999999987 5678889999999999999999999887543
|
|
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.62 E-value=3.5e-05 Score=71.72 Aligned_cols=192 Identities=11% Similarity=-0.043 Sum_probs=86.0
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCH
Q 036072 285 AMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNL 364 (631)
Q Consensus 285 li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~ 364 (631)
|.-.|...|+...|.+-+++.++.. +.+..+|..+...|-+.|+.+.|.+-|++..+-.+-+-.+.|.....+|..|++
T Consensus 41 Lal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl~p~~GdVLNNYG~FLC~qg~~ 119 (250)
T COG3063 41 LALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSLAPNNGDVLNNYGAFLCAQGRP 119 (250)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhcCCCccchhhhhhHHHHhCCCh
Confidence 3444444555555555555544443 223334444444444555555555555544443333444455555555555555
Q ss_pred HHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHH
Q 036072 365 MEAGRVWNEMIDKG-FKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGF 443 (631)
Q Consensus 365 ~~A~~l~~~m~~~g-~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~ 443 (631)
++|...|++....- ..--..+|..+.-+..+.|+.+.|.+.|+...+.. |+ .+.+.-.+....
T Consensus 120 ~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d--p~--------------~~~~~l~~a~~~ 183 (250)
T COG3063 120 EEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD--PQ--------------FPPALLELARLH 183 (250)
T ss_pred HHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC--cC--------------CChHHHHHHHHH
Confidence 55555555544321 11112344444444455555555555555544421 11 111222233333
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHH
Q 036072 444 GNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEM 494 (631)
Q Consensus 444 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m 494 (631)
.+.|++-.|..+++.....+. ++.......|..--..|+.+.+-++=..+
T Consensus 184 ~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL 233 (250)
T COG3063 184 YKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQL 233 (250)
T ss_pred HhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 444455555555554444433 44444444444444445544444433333
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.62 E-value=1.7e-06 Score=86.85 Aligned_cols=123 Identities=20% Similarity=0.246 Sum_probs=63.5
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036072 439 LITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKI----QKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514 (631)
Q Consensus 439 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~ 514 (631)
.+..|.+.++++.|.+.++.|.+. ..| .+...+..++.. .+.+.+|..+|+++.+. +.++..+.+.+..++.
T Consensus 137 ~Vqi~L~~~R~dlA~k~l~~~~~~--~eD-~~l~qLa~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l 212 (290)
T PF04733_consen 137 AVQILLKMNRPDLAEKELKNMQQI--DED-SILTQLAEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHL 212 (290)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHCC--SCC-HHHHHHHHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhc--CCc-HHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHH
Confidence 345555556666666666666543 122 222223333322 22466666666665443 3456666666666666
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHH
Q 036072 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS-GEAYKYLEEMLE 566 (631)
Q Consensus 515 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~-~~A~~ll~~m~~ 566 (631)
..|++++|.+++.+..+.+.. |..+...+|.+....|+. +.+.+++.++..
T Consensus 213 ~~~~~~eAe~~L~~al~~~~~-~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~ 264 (290)
T PF04733_consen 213 QLGHYEEAEELLEEALEKDPN-DPDTLANLIVCSLHLGKPTEAAERYLSQLKQ 264 (290)
T ss_dssp HCT-HHHHHHHHHHHCCC-CC-HHHHHHHHHHHHHHTT-TCHHHHHHHHHCHH
T ss_pred HhCCHHHHHHHHHHHHHhccC-CHHHHHHHHHHHHHhCCChhHHHHHHHHHHH
Confidence 666666666666666554332 445555555555555555 455556666554
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.60 E-value=4.4e-05 Score=71.08 Aligned_cols=196 Identities=14% Similarity=0.092 Sum_probs=99.3
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhc
Q 036072 352 TVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ 431 (631)
Q Consensus 352 ~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~ 431 (631)
..|.-+|...|+...|..-+++..+.. +-+..+|..+...|.+.|+.+.|.+.|+...+. .|+
T Consensus 39 lqLal~YL~~gd~~~A~~nlekAL~~D-Ps~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAlsl--~p~-------------- 101 (250)
T COG3063 39 LQLALGYLQQGDYAQAKKNLEKALEHD-PSYYLAHLVRAHYYQKLGENDLADESYRKALSL--APN-------------- 101 (250)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChhhHHHHHHHHHhc--CCC--------------
Confidence 334444555555555555555554431 112334444455555555555555555555442 232
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036072 432 NAAVYTCLITGFGNRRRMDIVYDLLKEMEERG-CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIM 510 (631)
Q Consensus 432 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li 510 (631)
+..+.|...-.+|..|++++|...|++....- ..--..+|..+.-+..+.|+.+.|...|++..+.. +-...+.-.+.
T Consensus 102 ~GdVLNNYG~FLC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~d-p~~~~~~l~~a 180 (250)
T COG3063 102 NGDVLNNYGAFLCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELD-PQFPPALLELA 180 (250)
T ss_pred ccchhhhhhHHHHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhC-cCCChHHHHHH
Confidence 33344444444555555555555555544431 11122345445445556666666666666666542 22234445555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 511 KSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLE 566 (631)
Q Consensus 511 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~ 566 (631)
....+.|++..|..+++.....+. ++..+.-..|+.-...|+.+.|.++=..+..
T Consensus 181 ~~~~~~~~y~~Ar~~~~~~~~~~~-~~A~sL~L~iriak~~gd~~~a~~Y~~qL~r 235 (250)
T COG3063 181 RLHYKAGDYAPARLYLERYQQRGG-AQAESLLLGIRIAKRLGDRAAAQRYQAQLQR 235 (250)
T ss_pred HHHHhcccchHHHHHHHHHHhccc-ccHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 566666666666666666555443 5555555555555566666666555555444
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.58 E-value=3.7e-05 Score=73.85 Aligned_cols=276 Identities=12% Similarity=0.077 Sum_probs=124.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHH-HHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 036072 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFK-IAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLE 322 (631)
Q Consensus 244 ~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~-~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~ 322 (631)
+......+-..|-...++..|...++++....+ ...-|. --...+.+.+.+..|+.+...|... +....-..-+.
T Consensus 43 ~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P-~~~qYrlY~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLq 118 (459)
T KOG4340|consen 43 SRAGLSLLGYCYYRLQEFALAAECYEQLGQLHP-ELEQYRLYQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQ 118 (459)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCh-HHHHHHHHHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHH
Confidence 344444555555555555556555555544322 111111 1233444555555555555555431 11111111111
Q ss_pred H--HHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 036072 323 N--LGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRS 400 (631)
Q Consensus 323 ~--~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~ 400 (631)
+ ....+++..+..+++++... .+..+.+...-...+.|++++|.+-|+...+-|---....||..+..| +.|+.+
T Consensus 119 aAIkYse~Dl~g~rsLveQlp~e--n~Ad~~in~gCllykegqyEaAvqkFqaAlqvsGyqpllAYniALaHy-~~~qya 195 (459)
T KOG4340|consen 119 AAIKYSEGDLPGSRSLVEQLPSE--NEADGQINLGCLLYKEGQYEAAVQKFQAALQVSGYQPLLAYNLALAHY-SSRQYA 195 (459)
T ss_pred HHHhcccccCcchHHHHHhccCC--CccchhccchheeeccccHHHHHHHHHHHHhhcCCCchhHHHHHHHHH-hhhhHH
Confidence 1 12335555555555555421 133344444444456677777777777666643333445566555333 456677
Q ss_pred HHHHHHHHHHHcCCCCcH----HHHHHHHHHHhhcCH---------HHHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCC
Q 036072 401 DAIKLFEVMKAKGPSPNV----RSYTIMIWKFCKQNA---------AVYTCLITGFGNRRRMDIVYDLLKEMEER-GCPP 466 (631)
Q Consensus 401 ~A~~ll~~m~~~g~~p~~----~~~~~li~~~~~~~~---------~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p 466 (631)
.|+++..++.++|+.-.+ ..-+..++.-.-.++ ..+|.-...+.+.|+++.|.+-+-+|.-+ .-..
T Consensus 196 sALk~iSEIieRG~r~HPElgIGm~tegiDvrsvgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~el 275 (459)
T KOG4340|consen 196 SALKHISEIIERGIRQHPELGIGMTTEGIDVRSVGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEEL 275 (459)
T ss_pred HHHHHHHHHHHhhhhcCCccCccceeccCchhcccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccC
Confidence 777777777776654211 111111111000011 12222233344556666666666555422 2233
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 036072 467 DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDE 528 (631)
Q Consensus 467 ~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~ 528 (631)
|++|...+.-.= ..+++-...+-+.-+.+.+ +-...||..++-.||+..-++.|..++.+
T Consensus 276 DPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAE 335 (459)
T KOG4340|consen 276 DPVTLHNQALMN-MDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAE 335 (459)
T ss_pred CchhhhHHHHhc-ccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhh
Confidence 444444332211 2233434444344444332 12345566666666666666666655543
|
|
| >KOG4340 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.54 E-value=1.5e-05 Score=76.36 Aligned_cols=326 Identities=12% Similarity=0.068 Sum_probs=212.2
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHH-HHHHHc
Q 036072 248 YNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCL-LENLGR 326 (631)
Q Consensus 248 y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~L-l~~~~~ 326 (631)
+.+.+-.+.+..++++|++++..-.+..+.+....+.|..+|....++..|-+.++.+-.. -|...-|... ...+.+
T Consensus 13 ftaviy~lI~d~ry~DaI~~l~s~~Er~p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql--~P~~~qYrlY~AQSLY~ 90 (459)
T KOG4340|consen 13 FTAVVYRLIRDARYADAIQLLGSELERSPRSRAGLSLLGYCYYRLQEFALAAECYEQLGQL--HPELEQYRLYQAQSLYK 90 (459)
T ss_pred hHHHHHHHHHHhhHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhh--ChHHHHHHHHHHHHHHH
Confidence 5666777788889999999999888888878889999999999999999999999999876 4555555432 345567
Q ss_pred CCChHHHHHHHHHHhcccCCChhhHHHHHHH--HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 036072 327 SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG--WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIK 404 (631)
Q Consensus 327 ~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~--~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ 404 (631)
.+.+..|+++...|.+. ++...-..-+.+ ....+++..+..+++++...| +..+.+.......+.|+++.|.+
T Consensus 91 A~i~ADALrV~~~~~D~--~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en---~Ad~~in~gCllykegqyEaAvq 165 (459)
T KOG4340|consen 91 ACIYADALRVAFLLLDN--PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN---EADGQINLGCLLYKEGQYEAAVQ 165 (459)
T ss_pred hcccHHHHHHHHHhcCC--HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC---ccchhccchheeeccccHHHHHH
Confidence 88899999999888764 222111111222 234578888888888876432 44444444455668899999999
Q ss_pred HHHHHHHc-CCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHH--------------
Q 036072 405 LFEVMKAK-GPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGL-------------- 469 (631)
Q Consensus 405 ll~~m~~~-g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~-------------- 469 (631)
-|+...+- |..|- ..||..+ +..+.|+++.|++...++.++|++-.+.
T Consensus 166 kFqaAlqvsGyqpl----------------lAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDvrs 228 (459)
T KOG4340|consen 166 KFQAALQVSGYQPL----------------LAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDVRS 228 (459)
T ss_pred HHHHHHhhcCCCch----------------hHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCchhc
Confidence 99887764 45432 3455544 4445679999999999999998763111
Q ss_pred -------HHHHHHH-------HHHhcCChhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 036072 470 -------TYNALIK-------LMKIQKMPDEAVRIYKEMVR-SGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC 534 (631)
Q Consensus 470 -------t~~~li~-------~~~~~g~~~~A~~l~~~m~~-~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~ 534 (631)
.-+.++. .+.+.++++.|.+-+.+|-- .....|..|...+.-.- ..+++.+..+-+.-+...+.
T Consensus 229 vgNt~~lh~Sal~eAfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~n-~~~~p~~g~~KLqFLL~~nP 307 (459)
T KOG4340|consen 229 VGNTLVLHQSALVEAFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALMN-MDARPTEGFEKLQFLLQQNP 307 (459)
T ss_pred ccchHHHHHHHHHHHhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHhc-ccCCccccHHHHHHHHhcCC
Confidence 1123333 34567788888887777752 22234556654432221 23445555555666666544
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCCHHHHHHHHHHH-HhcCCHHHHHHHHHHHH
Q 036072 535 CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM-KAPVLDYNKFAADL-SRAGRSYVLDELAQKMR 600 (631)
Q Consensus 535 ~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~-~p~~~~~~~li~~~-~~~g~~~~A~~l~~~m~ 600 (631)
. ...||..++-.||+..-++-|-+++-+-...-+ -.+...|+. +.++ ...-..++|.+-++.+.
T Consensus 308 f-P~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Yly~L-LdaLIt~qT~pEea~KKL~~La 373 (459)
T KOG4340|consen 308 F-PPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPYLYDL-LDALITCQTAPEEAFKKLDGLA 373 (459)
T ss_pred C-ChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHHHHHH-HHHHHhCCCCHHHHHHHHHHHH
Confidence 3 466788888888888888888887765333211 122333433 3343 34455677776666554
|
|
| >PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=98.54 E-value=5.5e-06 Score=83.16 Aligned_cols=253 Identities=10% Similarity=0.051 Sum_probs=166.3
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChH
Q 036072 253 SILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPK 331 (631)
Q Consensus 253 ~~~~~~g~~~~A~~l~~~m~~~g~-~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~ 331 (631)
+-+--.|++..++.-.+ ...... ........+.+++...|+.+.++ .++.... .|.......+...+....+-+
T Consensus 9 rn~fy~G~Y~~~i~e~~-~~~~~~~~~~e~~~~~~Rs~iAlg~~~~vl---~ei~~~~-~~~l~av~~la~y~~~~~~~e 83 (290)
T PF04733_consen 9 RNQFYLGNYQQCINEAS-LKSFSPENKLERDFYQYRSYIALGQYDSVL---SEIKKSS-SPELQAVRLLAEYLSSPSDKE 83 (290)
T ss_dssp HHHHCTT-HHHHCHHHH-CHTSTCHHHHHHHHHHHHHHHHTT-HHHHH---HHS-TTS-SCCCHHHHHHHHHHCTSTTHH
T ss_pred HHHHHhhhHHHHHHHhh-ccCCCchhHHHHHHHHHHHHHHcCChhHHH---HHhccCC-ChhHHHHHHHHHHHhCccchH
Confidence 34445688888776555 222222 23446677889999999877544 3443333 566666655554443334444
Q ss_pred HHHHHHHHHh-cccC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 036072 332 EAQLLFDKLK-HRFT-PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVM 409 (631)
Q Consensus 332 ~A~~l~~~m~-~~~~-p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m 409 (631)
.+..-+++.. +... .+..........+...|++++|++++..- -+.......+..|.+.++++.|.+.++.|
T Consensus 84 ~~l~~l~~~~~~~~~~~~~~~~~~~A~i~~~~~~~~~AL~~l~~~------~~lE~~al~Vqi~L~~~R~dlA~k~l~~~ 157 (290)
T PF04733_consen 84 SALEELKELLADQAGESNEIVQLLAATILFHEGDYEEALKLLHKG------GSLELLALAVQILLKMNRPDLAEKELKNM 157 (290)
T ss_dssp CHHHHHHHCCCTS---CHHHHHHHHHHHHCCCCHHHHHHCCCTTT------TCHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccccccHHHHHHHHHHHHHcCCHHHHHHHHHcc------CcccHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 5554444433 2222 23333333345667789999999988653 36677788899999999999999999999
Q ss_pred HHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHH
Q 036072 410 KAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVR 489 (631)
Q Consensus 410 ~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ 489 (631)
.+. ..|....+ + ..+++..+.....+.+|..+|+++.++ ..++..+.+.+..+....|++++|.+
T Consensus 158 ~~~--~eD~~l~q-L-----------a~awv~l~~g~e~~~~A~y~f~El~~~-~~~t~~~lng~A~~~l~~~~~~eAe~ 222 (290)
T PF04733_consen 158 QQI--DEDSILTQ-L-----------AEAWVNLATGGEKYQDAFYIFEELSDK-FGSTPKLLNGLAVCHLQLGHYEEAEE 222 (290)
T ss_dssp HCC--SCCHHHHH-H-----------HHHHHHHHHTTTCCCHHHHHHHHHHCC-S--SHHHHHHHHHHHHHCT-HHHHHH
T ss_pred Hhc--CCcHHHHH-H-----------HHHHHHHHhCchhHHHHHHHHHHHHhc-cCCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 874 34433222 1 233455555556899999999998775 56788999999999999999999999
Q ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHc
Q 036072 490 IYKEMVRSGFKPTIHTYNMIMKSYFQTGNY-EMGRKVWDEMIRR 532 (631)
Q Consensus 490 l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~-~~A~~~~~~m~~~ 532 (631)
++.+..+.. .-+..+...++.+....|+. +.+.+++.++...
T Consensus 223 ~L~~al~~~-~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL~~~ 265 (290)
T PF04733_consen 223 LLEEALEKD-PNDPDTLANLIVCSLHLGKPTEAAERYLSQLKQS 265 (290)
T ss_dssp HHHHHCCC--CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHCHHH
T ss_pred HHHHHHHhc-cCCHHHHHHHHHHHHHhCCChhHHHHHHHHHHHh
Confidence 999987654 33567777788888888887 7788888888764
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A. |
| >KOG2047 consensus mRNA splicing factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.53 E-value=0.0014 Score=69.52 Aligned_cols=305 Identities=12% Similarity=0.130 Sum_probs=167.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcc----------------------CHHHHHHHH
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAK----------------------ERKKAVAIF 302 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g----------------------~~~~A~~v~ 302 (631)
...|++|.+-|.+.|.++.|.++|++....- .+..-|..+.++|+.-. +++-....|
T Consensus 248 g~Lw~SLAdYYIr~g~~ekarDvyeeai~~v-~tvrDFt~ifd~Ya~FEE~~~~~~me~a~~~~~n~ed~~dl~~~~a~~ 326 (835)
T KOG2047|consen 248 GFLWCSLADYYIRSGLFEKARDVYEEAIQTV-MTVRDFTQIFDAYAQFEESCVAAKMELADEESGNEEDDVDLELHMARF 326 (835)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHhh-eehhhHHHHHHHHHHHHHHHHHHHHhhhhhcccChhhhhhHHHHHHHH
Confidence 3579999999999999999999999877652 23333444444443321 122233334
Q ss_pred HHHHhCCC-----------CcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCC------hhhHHHHHHHHHhcCCHH
Q 036072 303 ELMNKYKF-----------KAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPN------LTTYTVLLGGWCRVKNLM 365 (631)
Q Consensus 303 ~~m~~~g~-----------~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~------~~~y~~Li~~~~~~g~~~ 365 (631)
+.+..... +-++..|..-+.. ..|+..+-...+.+....+.|. ...|..+.+.|-..|+++
T Consensus 327 e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~l--~e~~~~~~i~tyteAv~~vdP~ka~Gs~~~Lw~~faklYe~~~~l~ 404 (835)
T KOG2047|consen 327 ESLMNRRPLLLNSVLLRQNPHNVEEWHKRVKL--YEGNAAEQINTYTEAVKTVDPKKAVGSPGTLWVEFAKLYENNGDLD 404 (835)
T ss_pred HHHHhccchHHHHHHHhcCCccHHHHHhhhhh--hcCChHHHHHHHHHHHHccCcccCCCChhhHHHHHHHHHHhcCcHH
Confidence 44433220 1222333322222 2456666777777765544332 246888999999999999
Q ss_pred HHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-----------CCcHHHHHHHHHHHhhc
Q 036072 366 EAGRVWNEMIDKGFKPD---VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP-----------SPNVRSYTIMIWKFCKQ 431 (631)
Q Consensus 366 ~A~~l~~~m~~~g~~p~---~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~-----------~p~~~~~~~li~~~~~~ 431 (631)
.|..+|++..+-..+-- ..+|.....+=.+..+++.|+++++......- .+....++
T Consensus 405 ~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhr--------- 475 (835)
T KOG2047|consen 405 DARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHR--------- 475 (835)
T ss_pred HHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHH---------
Confidence 99999999887543322 34455555555667788889888877653211 11122222
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH-HHHHHHH
Q 036072 432 NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTI-HTYNMIM 510 (631)
Q Consensus 432 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-~t~~~Li 510 (631)
+..+|...+...-..|-++....+++.+.+..+. ++.+.......+-.+.-++++.++|++-+..=-.|+. ..|+..+
T Consensus 476 SlkiWs~y~DleEs~gtfestk~vYdriidLria-TPqii~NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYL 554 (835)
T KOG2047|consen 476 SLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA-TPQIIINYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYL 554 (835)
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHH
Confidence 3455666666666666777777777777765543 2222111122233445566666666654443222332 3445444
Q ss_pred HHHHH---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHH
Q 036072 511 KSYFQ---TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGG--LISQDRSGEAYKYLEE 563 (631)
Q Consensus 511 ~~~~~---~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~--~~~~g~~~~A~~ll~~ 563 (631)
.-+.+ .-.++.|..+|++.++ |++|...-+--|+-+ =.+.|-...|+.++++
T Consensus 555 tkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyer 611 (835)
T KOG2047|consen 555 TKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYER 611 (835)
T ss_pred HHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 44433 1246666666666666 444433222111111 1134555555555554
|
|
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.49 E-value=0.0022 Score=66.91 Aligned_cols=116 Identities=16% Similarity=0.123 Sum_probs=60.4
Q ss_pred hhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHH
Q 036072 484 PDEAVRIYKEMVRS-GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP-DDNSYTVLIGGLISQDRSGEAYKYL 561 (631)
Q Consensus 484 ~~~A~~l~~~m~~~-g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~ll 561 (631)
.+....+++++... ...|+ .+|..+|+.-.+..-+..|..+|.+..+.+..+ ++..+++++.-||. ++.+-|.++|
T Consensus 347 ~~~~~~~~~~ll~~~~~~~t-Lv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIF 424 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLT-LVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIF 424 (656)
T ss_pred hhhhHHHHHHHHhhhccCCc-eehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHH
Confidence 34444455554432 22232 345555665556666666666666666655444 55556666655543 5556666666
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036072 562 EEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFS 602 (631)
Q Consensus 562 ~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 602 (631)
+-=+.. +.-++.--...++-+...++-..|..+|++...+
T Consensus 425 eLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s 464 (656)
T KOG1914|consen 425 ELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTS 464 (656)
T ss_pred HHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhc
Confidence 544332 1222233344555555555555555555555554
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.44 E-value=2.6e-07 Score=59.84 Aligned_cols=32 Identities=41% Similarity=0.778 Sum_probs=24.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 036072 378 GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVM 409 (631)
Q Consensus 378 g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m 409 (631)
|+.||..||++||.+||+.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 66777777777777777777777777777776
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.00048 Score=76.10 Aligned_cols=163 Identities=13% Similarity=0.144 Sum_probs=94.6
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-C--CHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHH
Q 036072 243 HNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-L--SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINC 319 (631)
Q Consensus 243 p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~-~--~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~ 319 (631)
-|+......+.++...+-..+.+++++++.-.+. . +....+.||-...+. +..++.+..+++.... .|+
T Consensus 982 ~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAika-d~trVm~YI~rLdnyD-a~~------ 1053 (1666)
T KOG0985|consen 982 QDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIKA-DRTRVMEYINRLDNYD-APD------ 1053 (1666)
T ss_pred CChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhhc-ChHHHHHHHHHhccCC-chh------
Confidence 3566666778888888888888888888765544 2 333455555444443 3345555555555443 122
Q ss_pred HHHHHHcCCChHHHHHHHHHHhcc----------------------cCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036072 320 LLENLGRSKLPKEAQLLFDKLKHR----------------------FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK 377 (631)
Q Consensus 320 Ll~~~~~~g~~~~A~~l~~~m~~~----------------------~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~ 377 (631)
+...+..++.+++|..+|+...-. --.....|..+..+-.+.|.+.+|.+-|-+..
T Consensus 1054 ia~iai~~~LyEEAF~ifkkf~~n~~A~~VLie~i~~ldRA~efAe~~n~p~vWsqlakAQL~~~~v~dAieSyikad-- 1131 (1666)
T KOG0985|consen 1054 IAEIAIENQLYEEAFAIFKKFDMNVSAIQVLIENIGSLDRAYEFAERCNEPAVWSQLAKAQLQGGLVKDAIESYIKAD-- 1131 (1666)
T ss_pred HHHHHhhhhHHHHHHHHHHHhcccHHHHHHHHHHhhhHHHHHHHHHhhCChHHHHHHHHHHHhcCchHHHHHHHHhcC--
Confidence 112222333334444444332110 00134567777777777777777766654322
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHH
Q 036072 378 GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVR 419 (631)
Q Consensus 378 g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~ 419 (631)
|...|.-+++...+.|.+++-.+++....+....|.+.
T Consensus 1132 ----Dps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~E~~id 1169 (1666)
T KOG0985|consen 1132 ----DPSNYLEVIDVASRTGKYEDLVKYLLMARKKVREPYID 1169 (1666)
T ss_pred ----CcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhcCccch
Confidence 55667788888888888888888777666665555543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.43 E-value=0.001 Score=78.80 Aligned_cols=333 Identities=11% Similarity=-0.030 Sum_probs=203.3
Q ss_pred hcCChhHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCC------CcC--HHHHHHHHHHHHcC
Q 036072 257 RARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKF------KAG--VDTINCLLENLGRS 327 (631)
Q Consensus 257 ~~g~~~~A~~l~~~m~~~g~-~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~------~~~--~~~~~~Ll~~~~~~ 327 (631)
..|+++.+...++.+..... .++.........+...|+++++..++....+.-- .+. ......+...+...
T Consensus 386 ~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 465 (903)
T PRK04841 386 NQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQVAIND 465 (903)
T ss_pred hcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHHHHhC
Confidence 34555555555544421111 1222333444555677899999988887754310 111 11222233455678
Q ss_pred CChHHHHHHHHHHhcccCC-C----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHHcC
Q 036072 328 KLPKEAQLLFDKLKHRFTP-N----LTTYTVLLGGWCRVKNLMEAGRVWNEMIDK----GF-KPDVVAHNIMLEGLLKIG 397 (631)
Q Consensus 328 g~~~~A~~l~~~m~~~~~p-~----~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~----g~-~p~~~ty~~li~~~~~~g 397 (631)
|++++|...+++..+..+. + ....+.+...+...|++++|...+++.... |- .....++..+...+...|
T Consensus 466 g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~~~~~G 545 (903)
T PRK04841 466 GDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEILFAQG 545 (903)
T ss_pred CCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHCC
Confidence 9999999999886543221 1 124566667778899999999999887743 11 111234555667788899
Q ss_pred CHHHHHHHHHHHHHc----CCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc--CCCC--CHH
Q 036072 398 KRSDAIKLFEVMKAK----GPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEER--GCPP--DGL 469 (631)
Q Consensus 398 ~~~~A~~ll~~m~~~----g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p--~~~ 469 (631)
++++|...+++.... +.. +... ....+..+...+...|++++|...+.+.... ...+ ...
T Consensus 546 ~~~~A~~~~~~al~~~~~~~~~-~~~~-----------~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~ 613 (903)
T PRK04841 546 FLQAAYETQEKAFQLIEEQHLE-QLPM-----------HEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQ 613 (903)
T ss_pred CHHHHHHHHHHHHHHHHHhccc-cccH-----------HHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHH
Confidence 999999998876652 111 1000 0112333455666779999999999887542 1112 233
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCC--CCCCHH--H-H-HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC---HHH
Q 036072 470 TYNALIKLMKIQKMPDEAVRIYKEMVRSG--FKPTIH--T-Y-NMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD---DNS 540 (631)
Q Consensus 470 t~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~p~~~--t-~-~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~---~~t 540 (631)
.+..+...+...|+.++|.+.+..+.... ...... . . ...+..+...|+.+.|...+........... ...
T Consensus 614 ~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~ 693 (903)
T PRK04841 614 CLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQ 693 (903)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHH
Confidence 44556667888999999999998876421 111111 1 0 1122445568899999998877654221111 112
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036072 541 YTVLIGGLISQDRSGEAYKYLEEMLEK----GMKAP-VLDYNKFAADLSRAGRSYVLDELAQKMRF 601 (631)
Q Consensus 541 ~~~li~~~~~~g~~~~A~~ll~~m~~~----g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 601 (631)
+..+..++...|+.++|...+++.... |...+ ..++..+..++.+.|+.++|...+.+...
T Consensus 694 ~~~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~ 759 (903)
T PRK04841 694 WRNIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALK 759 (903)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345667788899999999999988653 32222 24566778888999999999998887755
|
|
| >KOG3785 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=98.42 E-value=0.00082 Score=66.27 Aligned_cols=314 Identities=13% Similarity=0.085 Sum_probs=170.4
Q ss_pred cCHHHHHHHHHHHHhCCCCcCHHHHHHH-HHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCH-------
Q 036072 293 KERKKAVAIFELMNKYKFKAGVDTINCL-LENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNL------- 364 (631)
Q Consensus 293 g~~~~A~~v~~~m~~~g~~~~~~~~~~L-l~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~------- 364 (631)
-.+++|++++......+ |.-...|.- .-+|.+..-++-+.+++......++.+....|.......+.=+-
T Consensus 165 ~HYQeAIdvYkrvL~dn--~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q~pdStiA~NLkacn~fRl~ngr~ae~E~ 242 (557)
T KOG3785|consen 165 MHYQEAIDVYKRVLQDN--PEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQFPDSTIAKNLKACNLFRLINGRTAEDEK 242 (557)
T ss_pred HHHHHHHHHHHHHHhcC--hhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHhCCCcHHHHHHHHHHHhhhhccchhHHHH
Confidence 34567777777666542 344444432 33455666666666666665555555555555444433332111
Q ss_pred ----------------------------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC
Q 036072 365 ----------------------------MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP 416 (631)
Q Consensus 365 ----------------------------~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p 416 (631)
+.|++++-.+.+. -+.+...|+-.|.+.+++.+|..+.+++.- ..|
T Consensus 243 k~ladN~~~~~~f~~~l~rHNLVvFrngEgALqVLP~L~~~----IPEARlNL~iYyL~q~dVqeA~~L~Kdl~P--ttP 316 (557)
T KOG3785|consen 243 KELADNIDQEYPFIEYLCRHNLVVFRNGEGALQVLPSLMKH----IPEARLNLIIYYLNQNDVQEAISLCKDLDP--TTP 316 (557)
T ss_pred HHHHhcccccchhHHHHHHcCeEEEeCCccHHHhchHHHhh----ChHhhhhheeeecccccHHHHHHHHhhcCC--CCh
Confidence 1222222222211 112333455567788888888887776531 223
Q ss_pred cHHHHHHHHHHHhhc--------------------------CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHH
Q 036072 417 NVRSYTIMIWKFCKQ--------------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLT 470 (631)
Q Consensus 417 ~~~~~~~li~~~~~~--------------------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 470 (631)
-......++.+.... +..--.++...+.-..++++++-.+..++.--..-|...
T Consensus 317 ~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn 396 (557)
T KOG3785|consen 317 YEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFN 396 (557)
T ss_pred HHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhh
Confidence 333222222221111 111122333344444466777766666655433333333
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHHHHHH
Q 036072 471 YNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSY-TVLIGGLI 549 (631)
Q Consensus 471 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~-~~li~~~~ 549 (631)
| .+.++++..|.+.+|+++|-.+....++-+..-...|.++|.+++..+.|+.++-++.. ..+..+. ..+.+-|.
T Consensus 397 ~-N~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t---~~e~fsLLqlIAn~CY 472 (557)
T KOG3785|consen 397 L-NLAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNT---PSERFSLLQLIANDCY 472 (557)
T ss_pred h-HHHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCC---chhHHHHHHHHHHHHH
Confidence 3 36788889999999999998877665554444456777889999999988777655533 2233333 33445677
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHH-------HHHHHHHHhcCC----HHHHHHHHHHHHhcCC---CchHHHHHHHH
Q 036072 550 SQDRSGEAYKYLEEMLEKGMKAPVLDY-------NKFAADLSRAGR----SYVLDELAQKMRFSGK---FEVSNVLARWA 615 (631)
Q Consensus 550 ~~g~~~~A~~ll~~m~~~g~~p~~~~~-------~~li~~~~~~g~----~~~A~~l~~~m~~~g~---~~~~~~l~~~~ 615 (631)
+.+.+--|-+.|+++...+ |++..| .-+...++.... .....+++.-++.++. ..+-.++..|.
T Consensus 473 k~~eFyyaaKAFd~lE~lD--P~pEnWeGKRGACaG~f~~l~~~~~~~~p~~~~rEVvhllr~~~nsq~E~mikvvrkwa 550 (557)
T KOG3785|consen 473 KANEFYYAAKAFDELEILD--PTPENWEGKRGACAGLFRQLANHKTDPIPISQMREVVHLLRMKPNSQCEFMIKVVRKWA 550 (557)
T ss_pred HHHHHHHHHHhhhHHHccC--CCccccCCccchHHHHHHHHHcCCCCCCchhHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 8888888888888877654 444443 234444443322 2334445444444443 34556666887
Q ss_pred Hhhhh
Q 036072 616 ETTKN 620 (631)
Q Consensus 616 ~~~k~ 620 (631)
+.-+.
T Consensus 551 ~~~~v 555 (557)
T KOG3785|consen 551 ETHNV 555 (557)
T ss_pred HhcCC
Confidence 75443
|
|
| >PF12854 PPR_1: PPR repeat | Back alignment and domain information |
|---|
Probab=98.41 E-value=3.4e-07 Score=59.33 Aligned_cols=32 Identities=41% Similarity=0.775 Sum_probs=15.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 036072 533 GCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564 (631)
Q Consensus 533 g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m 564 (631)
|+.||..||++||.+|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 34444444444444444444444444444444
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.00017 Score=82.24 Aligned_cols=224 Identities=9% Similarity=0.013 Sum_probs=118.1
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCC-----ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 036072 313 GVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTP-----NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHN 387 (631)
Q Consensus 313 ~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p-----~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~ 387 (631)
+...|-..|......++.++|.+++++....+.+ -..+|.++++.-...|.-+...++|++..+.. -....|.
T Consensus 1457 SSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqyc--d~~~V~~ 1534 (1710)
T KOG1070|consen 1457 SSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQYC--DAYTVHL 1534 (1710)
T ss_pred cchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHhc--chHHHHH
Confidence 3444555555555566666666666655433211 12345555555555555556666666655531 1123455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC-
Q 036072 388 IMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPP- 466 (631)
Q Consensus 388 ~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p- 466 (631)
.|...|.+.+.+++|.++|+.|.+. +.- ...+|...+..+.++.+-+.|..++.+..+.=.+-
T Consensus 1535 ~L~~iy~k~ek~~~A~ell~~m~KK-F~q---------------~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~e 1598 (1710)
T KOG1070|consen 1535 KLLGIYEKSEKNDEADELLRLMLKK-FGQ---------------TRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQE 1598 (1710)
T ss_pred HHHHHHHHhhcchhHHHHHHHHHHH-hcc---------------hhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhh
Confidence 5666666666666666666666554 111 22334444555555555566666665554431110
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHH
Q 036072 467 DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD--NSYTVL 544 (631)
Q Consensus 467 ~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~l 544 (631)
......-.+..-.+.|+.+.+..+|+.....- +--...|+.++++=.++|+.+.+..+|++.+..++.|-. ..|...
T Consensus 1599 Hv~~IskfAqLEFk~GDaeRGRtlfEgll~ay-PKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKkw 1677 (1710)
T KOG1070|consen 1599 HVEFISKFAQLEFKYGDAERGRTLFEGLLSAY-PKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKKW 1677 (1710)
T ss_pred hHHHHHHHHHHHhhcCCchhhHHHHHHHHhhC-ccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHHH
Confidence 12233334444456667777777776666542 223456666677666777777777777777666655442 344555
Q ss_pred HHHHHHcCCHH
Q 036072 545 IGGLISQDRSG 555 (631)
Q Consensus 545 i~~~~~~g~~~ 555 (631)
+..=-++|+-+
T Consensus 1678 LeyEk~~Gde~ 1688 (1710)
T KOG1070|consen 1678 LEYEKSHGDEK 1688 (1710)
T ss_pred HHHHHhcCchh
Confidence 54444445543
|
|
| >PRK04841 transcriptional regulator MalT; Provisional | Back alignment and domain information |
|---|
Probab=98.37 E-value=0.0009 Score=79.31 Aligned_cols=305 Identities=10% Similarity=-0.003 Sum_probs=186.0
Q ss_pred HHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccC-------CCh--hhHHHHHHH
Q 036072 287 NAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT-------PNL--TTYTVLLGG 357 (631)
Q Consensus 287 ~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~-------p~~--~~y~~Li~~ 357 (631)
......|+++.+..+++.+.......+..........+...|++++|..++........ +.. .....+...
T Consensus 382 ~~l~~~g~~~~l~~~l~~lp~~~~~~~~~l~~~~a~~~~~~g~~~~a~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~a~~ 461 (903)
T PRK04841 382 WSLFNQGELSLLEECLNALPWEVLLENPRLVLLQAWLAQSQHRYSEVNTLLARAEQELKDRNIELDGTLQAEFNALRAQV 461 (903)
T ss_pred HHHHhcCChHHHHHHHHhCCHHHHhcCcchHHHHHHHHHHCCCHHHHHHHHHHHHHhccccCcccchhHHHHHHHHHHHH
Confidence 33445577777666666552211111222233344455677999999998887654211 111 122233455
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCH
Q 036072 358 WCRVKNLMEAGRVWNEMIDKGFKPD----VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNA 433 (631)
Q Consensus 358 ~~~~g~~~~A~~l~~~m~~~g~~p~----~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~ 433 (631)
+...|++++|...+++..+.--..+ ....+.+...+...|++++|...+.+........... +. ..
T Consensus 462 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~-~~---------~~ 531 (903)
T PRK04841 462 AINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVY-HY---------AL 531 (903)
T ss_pred HHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcch-HH---------HH
Confidence 6688999999999998876311112 1344556667788999999999998887531111100 00 01
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCC--C
Q 036072 434 AVYTCLITGFGNRRRMDIVYDLLKEMEER----GCP--P-DGLTYNALIKLMKIQKMPDEAVRIYKEMVRS--GFKP--T 502 (631)
Q Consensus 434 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~--p-~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p--~ 502 (631)
.++..+...+...|++++|...+++..+. +.. + ....+..+...+...|++++|...+.+.... ...+ .
T Consensus 532 ~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~ 611 (903)
T PRK04841 532 WSLLQQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQ 611 (903)
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHH
Confidence 23345566778899999999998876542 221 1 2234455556677889999999999887652 1112 2
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CCHHHH-----HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---H
Q 036072 503 IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC-PDDNSY-----TVLIGGLISQDRSGEAYKYLEEMLEKGMKAP---V 573 (631)
Q Consensus 503 ~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~-p~~~t~-----~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~---~ 573 (631)
...+..+...+...|++++|...++........ .....+ ...+..+...|+.+.|..++........... .
T Consensus 612 ~~~~~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~ 691 (903)
T PRK04841 612 LQCLAMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQ 691 (903)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHH
Confidence 344555667788899999999999887642110 011111 1122344568999999999877654321111 1
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036072 574 LDYNKFAADLSRAGRSYVLDELAQKMRF 601 (631)
Q Consensus 574 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 601 (631)
..+..+..++...|+.++|..++++...
T Consensus 692 ~~~~~~a~~~~~~g~~~~A~~~l~~al~ 719 (903)
T PRK04841 692 GQWRNIARAQILLGQFDEAEIILEELNE 719 (903)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 1245677888999999999999887754
|
|
| >KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=98.36 E-value=0.00027 Score=80.71 Aligned_cols=239 Identities=13% Similarity=0.129 Sum_probs=179.4
Q ss_pred HHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 036072 338 DKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK-GFKP---DVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413 (631)
Q Consensus 338 ~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~-g~~p---~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g 413 (631)
+++....+.+...|-..|......++.++|.++.++.... +++- -...|.++++.-..-|.-+...++|+++.+.
T Consensus 1448 erlvrssPNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy- 1526 (1710)
T KOG1070|consen 1448 ERLVRSSPNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY- 1526 (1710)
T ss_pred HHHHhcCCCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh-
Confidence 3333334456678999999999999999999999998754 1211 1345667777777778888889999988764
Q ss_pred CCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH
Q 036072 414 PSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKE 493 (631)
Q Consensus 414 ~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~ 493 (631)
+ | .-.+|..|...|.+.+..++|.++|+.|.++- .-....|...+..+.+..+-+.|..++.+
T Consensus 1527 c--d--------------~~~V~~~L~~iy~k~ek~~~A~ell~~m~KKF-~q~~~vW~~y~~fLl~~ne~~aa~~lL~r 1589 (1710)
T KOG1070|consen 1527 C--D--------------AYTVHLKLLGIYEKSEKNDEADELLRLMLKKF-GQTRKVWIMYADFLLRQNEAEAARELLKR 1589 (1710)
T ss_pred c--c--------------hHHHHHHHHHHHHHhhcchhHHHHHHHHHHHh-cchhhHHHHHHHHHhcccHHHHHHHHHHH
Confidence 1 1 12356778888999999999999999998762 24667888899999999999999999999
Q ss_pred HHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 036072 494 MVRSGFK-PTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP 572 (631)
Q Consensus 494 m~~~g~~-p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~ 572 (631)
..+.=-+ -......-.+..-.+.|+.+.+..+|+.....-.+ -...|+.+|+.-.++|+.+.+..+|++....++.|-
T Consensus 1590 AL~~lPk~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPK-RtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1590 ALKSLPKQEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPK-RTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred HHhhcchhhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCcc-chhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 8874111 12444555566667899999999999998876433 567899999999999999999999999999988775
Q ss_pred HH--HHHHHHHHHHhcCCHHHHHHH
Q 036072 573 VL--DYNKFAADLSRAGRSYVLDEL 595 (631)
Q Consensus 573 ~~--~~~~li~~~~~~g~~~~A~~l 595 (631)
.. .|..++..-...|+-+.++.+
T Consensus 1669 kmKfffKkwLeyEk~~Gde~~vE~V 1693 (1710)
T KOG1070|consen 1669 KMKFFFKKWLEYEKSHGDEKNVEYV 1693 (1710)
T ss_pred HhHHHHHHHHHHHHhcCchhhHHHH
Confidence 43 366666666666775554443
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.35 E-value=0.00046 Score=70.27 Aligned_cols=215 Identities=7% Similarity=0.004 Sum_probs=140.1
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 036072 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAK-ERKKAVAIFELMNKYKFKAGVDTINCLLENLG 325 (631)
Q Consensus 247 ~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g-~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~ 325 (631)
++..+-.++...++.++|+.+.+++.+..+-+..+|+.--.++...| ++++++..++.+.+.. +-+..+|+.-.-.+.
T Consensus 39 a~~~~ra~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~n-pknyqaW~~R~~~l~ 117 (320)
T PLN02789 39 AMDYFRAVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDN-PKNYQIWHHRRWLAE 117 (320)
T ss_pred HHHHHHHHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHC-CcchHHhHHHHHHHH
Confidence 34444555566778889999999988887777777776666666667 5788999998888765 445556765544455
Q ss_pred cCCC--hHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc---CCH-
Q 036072 326 RSKL--PKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKI---GKR- 399 (631)
Q Consensus 326 ~~g~--~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~---g~~- 399 (631)
+.|. .+++..+++.+.+..+-|..+|+...-.+...|+++++++.++++.+.... |..+|+.....+.+. |..
T Consensus 118 ~l~~~~~~~el~~~~kal~~dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N~sAW~~R~~vl~~~~~l~~~~ 196 (320)
T PLN02789 118 KLGPDAANKELEFTRKILSLDAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-NNSAWNQRYFVITRSPLLGGLE 196 (320)
T ss_pred HcCchhhHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-chhHHHHHHHHHHhcccccccc
Confidence 5554 266788888887766778889998888888899999999999999987544 556666655555443 222
Q ss_pred ---HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 036072 400 ---SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGN----RRRMDIVYDLLKEMEERGCPPDGLTYN 472 (631)
Q Consensus 400 ---~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~ 472 (631)
+++++....+... .|+ +..+|+-+...+.. .+...+|.+.+.+..+.++ .+.....
T Consensus 197 ~~~e~el~y~~~aI~~--~P~--------------N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~~-~s~~al~ 259 (320)
T PLN02789 197 AMRDSELKYTIDAILA--NPR--------------NESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKDS-NHVFALS 259 (320)
T ss_pred ccHHHHHHHHHHHHHh--CCC--------------CcCHHHHHHHHHhcCCcccccchhHHHHHHHhhcccC-CcHHHHH
Confidence 3455555555443 233 33344444444444 1334456666666554332 2455566
Q ss_pred HHHHHHHh
Q 036072 473 ALIKLMKI 480 (631)
Q Consensus 473 ~li~~~~~ 480 (631)
.|+..|+.
T Consensus 260 ~l~d~~~~ 267 (320)
T PLN02789 260 DLLDLLCE 267 (320)
T ss_pred HHHHHHHh
Confidence 66666654
|
|
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=98.33 E-value=0.0042 Score=68.53 Aligned_cols=211 Identities=16% Similarity=0.090 Sum_probs=114.6
Q ss_pred HHHHHHhcCCCCCHHHHHHHHHhhcc-CchhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 036072 198 MEAVLDECGINLSHNLVVDVLERFRH-ARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL 276 (631)
Q Consensus 198 l~~~l~~~~~~~~~~~~~~vl~~~~~-~~~~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~ 276 (631)
+...|++.+..+....+.+ |..++. ..+.|....+-...-.+ .|..|...+-..|.+.++.++|..+|++.....+
T Consensus 32 ~~kllkk~Pn~~~a~vLka-Lsl~r~gk~~ea~~~Le~~~~~~~--~D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~P 108 (932)
T KOG2053|consen 32 LGKLLKKHPNALYAKVLKA-LSLFRLGKGDEALKLLEALYGLKG--TDDLTLQFLQNVYRDLGKLDEAVHLYERANQKYP 108 (932)
T ss_pred HHHHHHHCCCcHHHHHHHH-HHHHHhcCchhHHHHHhhhccCCC--CchHHHHHHHHHHHHHhhhhHHHHHHHHHHhhCC
Confidence 4455555554433333332 222222 22347766665533222 2788888888889999999999999988887755
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCC----------ChHHHHHHHHHHhccc-C
Q 036072 277 LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSK----------LPKEAQLLFDKLKHRF-T 345 (631)
Q Consensus 277 ~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g----------~~~~A~~l~~~m~~~~-~ 345 (631)
- .+....+..+|.+.+.+.+-.++--+|-+. ++-....+=+++..+...- -..-|.+.++.+.+.- +
T Consensus 109 ~-eell~~lFmayvR~~~yk~qQkaa~~LyK~-~pk~~yyfWsV~Slilqs~~~~~~~~~~i~l~LA~~m~~~~l~~~gk 186 (932)
T KOG2053|consen 109 S-EELLYHLFMAYVREKSYKKQQKAALQLYKN-FPKRAYYFWSVISLILQSIFSENELLDPILLALAEKMVQKLLEKKGK 186 (932)
T ss_pred c-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-CCcccchHHHHHHHHHHhccCCcccccchhHHHHHHHHHHHhccCCc
Confidence 4 666777777888887776655544444332 2344555555555544321 1223444555543321 1
Q ss_pred -CChhhHHHHHHHHHhcCCHHHHHHHH-HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 036072 346 -PNLTTYTVLLGGWCRVKNLMEAGRVW-NEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413 (631)
Q Consensus 346 -p~~~~y~~Li~~~~~~g~~~~A~~l~-~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g 413 (631)
-+..-.......+...|.+++|++++ ....+.-..-+...-+.-+..+...+++.+..++-.++...|
T Consensus 187 ~~s~aE~~Lyl~iL~~~~k~~eal~~l~~~la~~l~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 187 IESEAEIILYLLILELQGKYQEALEFLAITLAEKLTSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred cchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 11122223334445667788888877 333333222233333444555555666666666655555544
|
|
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.32 E-value=0.0001 Score=77.14 Aligned_cols=263 Identities=16% Similarity=0.108 Sum_probs=187.7
Q ss_pred HHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 036072 322 ENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSD 401 (631)
Q Consensus 322 ~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~ 401 (631)
.-+.+.|++.+|.-.|+......+-+...|--|.......++-..|+..+.+..+.. .-|....-.|.-.|...|.-..
T Consensus 293 ~~lm~nG~L~~A~LafEAAVkqdP~haeAW~~LG~~qaENE~E~~ai~AL~rcl~Ld-P~NleaLmaLAVSytNeg~q~~ 371 (579)
T KOG1125|consen 293 CNLMKNGDLSEAALAFEAAVKQDPQHAEAWQKLGITQAENENEQNAISALRRCLELD-PTNLEALMALAVSYTNEGLQNQ 371 (579)
T ss_pred HHHHhcCCchHHHHHHHHHHhhChHHHHHHHHhhhHhhhccchHHHHHHHHHHHhcC-CccHHHHHHHHHHHhhhhhHHH
Confidence 345678999999999998887777788899999999999999999999999988852 2256667777788888888889
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHH-HcCCCCCHHHHHHHHHHHHh
Q 036072 402 AIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEME-ERGCPPDGLTYNALIKLMKI 480 (631)
Q Consensus 402 A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~-~~g~~p~~~t~~~li~~~~~ 480 (631)
|+.+++......+. |..+..+ ..+...-+. ..+.....+....++|-++. +.+..+|......|--.|.-
T Consensus 372 Al~~L~~Wi~~~p~-----y~~l~~a--~~~~~~~~~--~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~l 442 (579)
T KOG1125|consen 372 ALKMLDKWIRNKPK-----YVHLVSA--GENEDFENT--KSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNL 442 (579)
T ss_pred HHHHHHHHHHhCcc-----chhcccc--CccccccCC--cCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhc
Confidence 99999887654211 0000000 000000000 01111123455566665554 55655788888888888999
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHH
Q 036072 481 QKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD-DNSYTVLIGGLISQDRSGEAYK 559 (631)
Q Consensus 481 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~ 559 (631)
.|++++|.+.|+.++... +-|..+||.|...++...+.++|+..|++.++. +|+ +.+...|.-+|...|.+++|.+
T Consensus 443 s~efdraiDcf~~AL~v~-Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNlG~ykEA~~ 519 (579)
T KOG1125|consen 443 SGEFDRAVDCFEAALQVK-PNDYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNLGAYKEAVK 519 (579)
T ss_pred chHHHHHHHHHHHHHhcC-CchHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhhhhHHHHHH
Confidence 999999999999999863 446789999999999999999999999999875 455 3344456667899999999999
Q ss_pred HHHHHHHC---------CCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036072 560 YLEEMLEK---------GMKAPVLDYNKFAADLSRAGRSYVLDELAQ 597 (631)
Q Consensus 560 ll~~m~~~---------g~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 597 (631)
.|-+.+.. +..++...|.+|=.++...++.|.+.+...
T Consensus 520 hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a~~ 566 (579)
T KOG1125|consen 520 HLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEAAP 566 (579)
T ss_pred HHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHhcc
Confidence 88776532 112234678888888888888886666543
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.31 E-value=9.6e-05 Score=72.35 Aligned_cols=171 Identities=11% Similarity=0.029 Sum_probs=130.5
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHhCCCC-cC-HHH
Q 036072 242 AHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSM---ETFKIAMNAFAAAKERKKAVAIFELMNKYKFK-AG-VDT 316 (631)
Q Consensus 242 ~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~---~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~-~~-~~~ 316 (631)
......+-.+...+...|+++.|...|+++....+.++ .++..+..++...|++++|+..++.+.+..-. +. ..+
T Consensus 30 ~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 109 (235)
T TIGR03302 30 EWPAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRLHPNHPDADYA 109 (235)
T ss_pred cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCchHHH
Confidence 34567788888889999999999999999988766443 57788889999999999999999999876421 11 124
Q ss_pred HHHHHHHHHcC--------CChHHHHHHHHHHhcccCCChhhH-----------------HHHHHHHHhcCCHHHHHHHH
Q 036072 317 INCLLENLGRS--------KLPKEAQLLFDKLKHRFTPNLTTY-----------------TVLLGGWCRVKNLMEAGRVW 371 (631)
Q Consensus 317 ~~~Ll~~~~~~--------g~~~~A~~l~~~m~~~~~p~~~~y-----------------~~Li~~~~~~g~~~~A~~l~ 371 (631)
+..+..++... |+.++|.+.|+.+....+.+...+ ..+...|.+.|++++|...+
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~~~~ 189 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRRYPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAINRF 189 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHHHHH
Confidence 55555555544 778899999999876554444332 13456788899999999999
Q ss_pred HHHHHcCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036072 372 NEMIDKGF--KPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412 (631)
Q Consensus 372 ~~m~~~g~--~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~ 412 (631)
+...+... ......+..+..++.+.|++++|..+++.+...
T Consensus 190 ~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~ 232 (235)
T TIGR03302 190 ETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGAN 232 (235)
T ss_pred HHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 99987621 223568889999999999999999999888764
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG1125 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.27 E-value=0.00014 Score=76.25 Aligned_cols=120 Identities=18% Similarity=0.150 Sum_probs=75.2
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHc
Q 036072 438 CLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPT-IHTYNMIMKSYFQT 516 (631)
Q Consensus 438 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~Li~~~~~~ 516 (631)
.|.-.|--.|++++|.+.|+........ |..+||-|-..++...+.++|+..|.+.++. +|+ +.....|.-+|...
T Consensus 435 ~LGVLy~ls~efdraiDcf~~AL~v~Pn-d~~lWNRLGAtLAN~~~s~EAIsAY~rALqL--qP~yVR~RyNlgIS~mNl 511 (579)
T KOG1125|consen 435 GLGVLYNLSGEFDRAVDCFEAALQVKPN-DYLLWNRLGATLANGNRSEEAISAYNRALQL--QPGYVRVRYNLGISCMNL 511 (579)
T ss_pred hhHHHHhcchHHHHHHHHHHHHHhcCCc-hHHHHHHhhHHhcCCcccHHHHHHHHHHHhc--CCCeeeeehhhhhhhhhh
Confidence 3444455556777777777776654322 5667777777777777777787777777764 454 23334455567777
Q ss_pred CCHHHHHHHHHHHHH---c------CCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 036072 517 GNYEMGRKVWDEMIR---R------GCCPDDNSYTVLIGGLISQDRSGEAYKY 560 (631)
Q Consensus 517 g~~~~A~~~~~~m~~---~------g~~p~~~t~~~li~~~~~~g~~~~A~~l 560 (631)
|.+++|.+.|-..+. + +..++...|.+|=.++.-.++.+-+...
T Consensus 512 G~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l~~a 564 (579)
T KOG1125|consen 512 GAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLLQEA 564 (579)
T ss_pred hhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHHHHh
Confidence 777777776665443 1 1223456777777667766766644443
|
|
| >KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.0071 Score=63.87 Aligned_cols=222 Identities=12% Similarity=0.119 Sum_probs=137.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHH--HHHHH-
Q 036072 248 YNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINC--LLENL- 324 (631)
Q Consensus 248 y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~--Ll~~~- 324 (631)
.-+=++.+...+++++|......+...++.+..++..=+-+..+.+++++|+.+.+.-.. ..+++. +=.+|
T Consensus 15 l~t~ln~~~~~~e~e~a~k~~~Kil~~~pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc 88 (652)
T KOG2376|consen 15 LLTDLNRHGKNGEYEEAVKTANKILSIVPDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYC 88 (652)
T ss_pred HHHHHHHhccchHHHHHHHHHHHHHhcCCCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHH
Confidence 334566677889999999999999998877888999999999999999999965543321 112222 23444
Q ss_pred -HcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 036072 325 -GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAI 403 (631)
Q Consensus 325 -~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~ 403 (631)
.+.+..++|...++..... +..+...-...+.+.+++++|.++|+.+.+++.. .+...+.+-+.. ...+.
T Consensus 89 ~Yrlnk~Dealk~~~~~~~~---~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~d----d~d~~~r~nl~a--~~a~l 159 (652)
T KOG2376|consen 89 EYRLNKLDEALKTLKGLDRL---DDKLLELRAQVLYRLERYDEALDIYQHLAKNNSD----DQDEERRANLLA--VAAAL 159 (652)
T ss_pred HHHcccHHHHHHHHhccccc---chHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCc----hHHHHHHHHHHH--HHHhh
Confidence 4678999999998844332 4456666778899999999999999999887432 233333221110 00111
Q ss_pred HHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc-------CCCCCH------H-
Q 036072 404 KLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEER-------GCPPDG------L- 469 (631)
Q Consensus 404 ~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-------g~~p~~------~- 469 (631)
.. ..|......| ..+|..+.+. .-.+...|++.+|+++++..... +-.-+. .
T Consensus 160 ~~-~~~q~v~~v~-e~syel~yN~------------Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~ 225 (652)
T KOG2376|consen 160 QV-QLLQSVPEVP-EDSYELLYNT------------ACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNP 225 (652)
T ss_pred hH-HHHHhccCCC-cchHHHHHHH------------HHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHH
Confidence 11 1233322333 3344443322 23455678888888888776211 100001 0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 036072 470 TYNALIKLMKIQKMPDEAVRIYKEMVRSG 498 (631)
Q Consensus 470 t~~~li~~~~~~g~~~~A~~l~~~m~~~g 498 (631)
+-.-|.-++-..|+.++|..+|...++..
T Consensus 226 IrvQlayVlQ~~Gqt~ea~~iy~~~i~~~ 254 (652)
T KOG2376|consen 226 IRVQLAYVLQLQGQTAEASSIYVDIIKRN 254 (652)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHhc
Confidence 11223335667788888888888777654
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.25 E-value=0.00064 Score=77.08 Aligned_cols=241 Identities=9% Similarity=0.135 Sum_probs=147.8
Q ss_pred CCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHH
Q 036072 241 FAH-NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINC 319 (631)
Q Consensus 241 ~~p-~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~ 319 (631)
+.| +...|..|+..+...+++++|.++.+...+..+-....|-.+...+...++...+.-+ .
T Consensus 26 ~~p~n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~P~~i~~yy~~G~l~~q~~~~~~~~lv-----------------~ 88 (906)
T PRK14720 26 YSLSKFKELDDLIDAYKSENLTDEAKDICEEHLKEHKKSISALYISGILSLSRRPLNDSNLL-----------------N 88 (906)
T ss_pred CCcchHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCCcceehHHHHHHHHHhhcchhhhhhh-----------------h
Confidence 443 4678999999999999999999999988877765555555555577777776555444 2
Q ss_pred HHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 036072 320 LLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399 (631)
Q Consensus 320 Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~ 399 (631)
+++......++.....+...|.+ ..-+...+..+..+|-+.|+.++|..+|+++.+.. .-|..+.|.+...|... ++
T Consensus 89 ~l~~~~~~~~~~~ve~~~~~i~~-~~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D-~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 89 LIDSFSQNLKWAIVEHICDKILL-YGENKLALRTLAEAYAKLNENKKLKGVWERLVKAD-RDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhhhcccccchhHHHHHHHHHHh-hhhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHh-hH
Confidence 33333334444344444444443 23345577778888888888888888888888765 44677788888888888 88
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 036072 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMK 479 (631)
Q Consensus 400 ~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~ 479 (631)
++|.+++...... |...+++..+.+++.++...... +
T Consensus 166 ~KA~~m~~KAV~~------------------------------~i~~kq~~~~~e~W~k~~~~~~~-d------------ 202 (906)
T PRK14720 166 EKAITYLKKAIYR------------------------------FIKKKQYVGIEEIWSKLVHYNSD-D------------ 202 (906)
T ss_pred HHHHHHHHHHHHH------------------------------HHhhhcchHHHHHHHHHHhcCcc-c------------
Confidence 8888888776442 33335666667777666654211 1
Q ss_pred hcCChhHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 036072 480 IQKMPDEAVRIYKEMVRS-GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLI 549 (631)
Q Consensus 480 ~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~ 549 (631)
++.-.++.+.+... |..--..++-.+-..|-..++++++..+++.+++.... |.....-++.+|.
T Consensus 203 ----~d~f~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~-n~~a~~~l~~~y~ 268 (906)
T PRK14720 203 ----FDFFLRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNK-NNKAREELIRFYK 268 (906)
T ss_pred ----chHHHHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCc-chhhHHHHHHHHH
Confidence 12222222222221 22223344455555566666666666666666665433 4444555555544
|
|
| >PLN02789 farnesyltranstransferase | Back alignment and domain information |
|---|
Probab=98.24 E-value=0.00095 Score=68.02 Aligned_cols=213 Identities=8% Similarity=-0.029 Sum_probs=143.6
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCC-ChHHHHHHHHHHhcccCCChhhHHHHHHHHHhc
Q 036072 283 KIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSK-LPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRV 361 (631)
Q Consensus 283 ~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g-~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~ 361 (631)
..+-..+...+..++|+.+.+.+++.. +-+..+|+.--.++...| .+++++..++++.+..+.+..+|+.....+.+.
T Consensus 41 ~~~ra~l~~~e~serAL~lt~~aI~ln-P~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l 119 (320)
T PLN02789 41 DYFRAVYASDERSPRALDLTADVIRLN-PGNYTVWHFRRLCLEALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKL 119 (320)
T ss_pred HHHHHHHHcCCCCHHHHHHHHHHHHHC-chhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHc
Confidence 333344445677889999999988864 445556666555666666 679999999998877777777888776666667
Q ss_pred CCH--HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHH
Q 036072 362 KNL--MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCL 439 (631)
Q Consensus 362 g~~--~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~l 439 (631)
|+. ++++.+++.+.+... -|..+|+...-++...|+++++++.++++.+.... + ..+|+..
T Consensus 120 ~~~~~~~el~~~~kal~~dp-kNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~-N---------------~sAW~~R 182 (320)
T PLN02789 120 GPDAANKELEFTRKILSLDA-KNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVR-N---------------NSAWNQR 182 (320)
T ss_pred CchhhHHHHHHHHHHHHhCc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCC-c---------------hhHHHHH
Confidence 753 778999989987643 37788988888888999999999999999987544 2 2223332
Q ss_pred HHHHhcc---CC----HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc----CChhHHHHHHHHHHHCCCCCCHHHHHH
Q 036072 440 ITGFGNR---RR----MDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQ----KMPDEAVRIYKEMVRSGFKPTIHTYNM 508 (631)
Q Consensus 440 i~~~~~~---g~----~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~----g~~~~A~~l~~~m~~~g~~p~~~t~~~ 508 (631)
...+.+. |. .++++++..++..... -|...|+.+...+... +...+|...+.+..+.+ ..+......
T Consensus 183 ~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P-~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~-~~s~~al~~ 260 (320)
T PLN02789 183 YFVITRSPLLGGLEAMRDSELKYTIDAILANP-RNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD-SNHVFALSD 260 (320)
T ss_pred HHHHHhccccccccccHHHHHHHHHHHHHhCC-CCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc-CCcHHHHHH
Confidence 2222222 22 3456666666665533 3566777777777662 33455777777766543 335666777
Q ss_pred HHHHHHH
Q 036072 509 IMKSYFQ 515 (631)
Q Consensus 509 Li~~~~~ 515 (631)
|++.|+.
T Consensus 261 l~d~~~~ 267 (320)
T PLN02789 261 LLDLLCE 267 (320)
T ss_pred HHHHHHh
Confidence 7777764
|
|
| >KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.22 E-value=0.006 Score=67.88 Aligned_cols=311 Identities=13% Similarity=0.128 Sum_probs=183.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHhCC--CCcCHHHHH
Q 036072 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL---SMETFKIAMNAFAAAKERKKAVAIFELMNKYK--FKAGVDTIN 318 (631)
Q Consensus 244 ~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~---~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g--~~~~~~~~~ 318 (631)
|...|+.++.- .-..-..+++.....+++ +++..+..+.++...+-..+.+++++.+.-.. +.-+...-|
T Consensus 951 D~~LW~~VL~e-----~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfMtadLp~eLIELLEKIvL~~S~Fse~~nLQn 1025 (1666)
T KOG0985|consen 951 DPDLWAKVLNE-----ENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSENRNLQN 1025 (1666)
T ss_pred ChHHHHHHHhc-----cChHHHHHHHHHHHhcCCccCChHHHHHHHHHHHhcCCcHHHHHHHHHHhcCCcccccchhhhh
Confidence 46777766632 112234567777777663 88899999999999999999999999987432 222333334
Q ss_pred HHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 036072 319 CLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGK 398 (631)
Q Consensus 319 ~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~ 398 (631)
.|+-... .-+.....+..+++..-..|++ ...+...+-+++|..+|+... .+..+.+.||.- .+.
T Consensus 1026 LLiLtAi-kad~trVm~YI~rLdnyDa~~i------a~iai~~~LyEEAF~ifkkf~-----~n~~A~~VLie~---i~~ 1090 (1666)
T KOG0985|consen 1026 LLILTAI-KADRTRVMEYINRLDNYDAPDI------AEIAIENQLYEEAFAIFKKFD-----MNVSAIQVLIEN---IGS 1090 (1666)
T ss_pred hHHHHHh-hcChHHHHHHHHHhccCCchhH------HHHHhhhhHHHHHHHHHHHhc-----ccHHHHHHHHHH---hhh
Confidence 4444433 4456677777777765434443 344556677888888887653 244445555542 244
Q ss_pred HHHHHHHHHHHH-------------HcCCCCcHHHHHHHHHHHhhc-CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC
Q 036072 399 RSDAIKLFEVMK-------------AKGPSPNVRSYTIMIWKFCKQ-NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464 (631)
Q Consensus 399 ~~~A~~ll~~m~-------------~~g~~p~~~~~~~li~~~~~~-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 464 (631)
.+.|.++-+... +.|..|+ .|.+|.+. |+..|..++....+.|.+++-.+++...+++.-
T Consensus 1091 ldRA~efAe~~n~p~vWsqlakAQL~~~~v~d------AieSyikadDps~y~eVi~~a~~~~~~edLv~yL~MaRkk~~ 1164 (1666)
T KOG0985|consen 1091 LDRAYEFAERCNEPAVWSQLAKAQLQGGLVKD------AIESYIKADDPSNYLEVIDVASRTGKYEDLVKYLLMARKKVR 1164 (1666)
T ss_pred HHHHHHHHHhhCChHHHHHHHHHHHhcCchHH------HHHHHHhcCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHhhc
Confidence 555554443321 1111111 23333333 666777778888888888888888777776655
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 036072 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544 (631)
Q Consensus 465 ~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 544 (631)
.|... +.||-+|++.+++.+.++++. .||......+.+-|...+.++.|.-+|. +..-|..|
T Consensus 1165 E~~id--~eLi~AyAkt~rl~elE~fi~-------gpN~A~i~~vGdrcf~~~~y~aAkl~y~---------~vSN~a~L 1226 (1666)
T KOG0985|consen 1165 EPYID--SELIFAYAKTNRLTELEEFIA-------GPNVANIQQVGDRCFEEKMYEAAKLLYS---------NVSNFAKL 1226 (1666)
T ss_pred Cccch--HHHHHHHHHhchHHHHHHHhc-------CCCchhHHHHhHHHhhhhhhHHHHHHHH---------HhhhHHHH
Confidence 55443 467778888887766555442 4566666666666666666666655554 23334455
Q ss_pred HHHHHHcCCHHHHHHHHHH------------------------HHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036072 545 IGGLISQDRSGEAYKYLEE------------------------MLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQK 598 (631)
Q Consensus 545 i~~~~~~g~~~~A~~ll~~------------------------m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 598 (631)
...+...|+++.|.+.-++ |-...+........-++..|-..|-+++.+.+++-
T Consensus 1227 a~TLV~LgeyQ~AVD~aRKAns~ktWK~VcfaCvd~~EFrlAQiCGL~iivhadeLeeli~~Yq~rGyFeElIsl~Ea 1304 (1666)
T KOG0985|consen 1227 ASTLVYLGEYQGAVDAARKANSTKTWKEVCFACVDKEEFRLAQICGLNIIVHADELEELIEYYQDRGYFEELISLLEA 1304 (1666)
T ss_pred HHHHHHHHHHHHHHHHhhhccchhHHHHHHHHHhchhhhhHHHhcCceEEEehHhHHHHHHHHHhcCcHHHHHHHHHh
Confidence 5555555555554433222 22222223344456666777777777776666653
|
|
| >TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO | Back alignment and domain information |
|---|
Probab=98.21 E-value=0.00039 Score=68.01 Aligned_cols=58 Identities=10% Similarity=0.200 Sum_probs=30.6
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCC-CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 509 IMKSYFQTGNYEMGRKVWDEMIRRGC-CP-DDNSYTVLIGGLISQDRSGEAYKYLEEMLE 566 (631)
Q Consensus 509 Li~~~~~~g~~~~A~~~~~~m~~~g~-~p-~~~t~~~li~~~~~~g~~~~A~~ll~~m~~ 566 (631)
+...|.+.|++++|...++...+... .| ....+..+..++...|++++|.++++.+..
T Consensus 172 ~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~ 231 (235)
T TIGR03302 172 VARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGA 231 (235)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 33445555666666666665554311 11 234555555666666666666665555543
|
Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795). |
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.20 E-value=0.00031 Score=76.03 Aligned_cols=133 Identities=20% Similarity=0.210 Sum_probs=89.9
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036072 432 NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMK 511 (631)
Q Consensus 432 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~ 511 (631)
+...|.-+...+-..|+++.|+.+|...++ |-+++...|-.|+.++|-++-++- -|......|.+
T Consensus 911 d~~L~~WWgqYlES~GemdaAl~~Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~es------gd~AAcYhlaR 975 (1416)
T KOG3617|consen 911 DESLYSWWGQYLESVGEMDAALSFYSSAKD---------YFSMVRIKCIQGKTDKAARIAEES------GDKAACYHLAR 975 (1416)
T ss_pred chHHHHHHHHHHhcccchHHHHHHHHHhhh---------hhhheeeEeeccCchHHHHHHHhc------ccHHHHHHHHH
Confidence 555666677777788999999999987665 556777788899999999887652 25667778899
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC---------------CHHHHHHHHHHHHHCCCCCCHHHH
Q 036072 512 SYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQD---------------RSGEAYKYLEEMLEKGMKAPVLDY 576 (631)
Q Consensus 512 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g---------------~~~~A~~ll~~m~~~g~~p~~~~~ 576 (631)
.|-..|++.+|..+|.+... |...|+.|-.++ +.-.|-.+|++. |. .+
T Consensus 976 ~YEn~g~v~~Av~FfTrAqa---------fsnAIRlcKEnd~~d~L~nlal~s~~~d~v~aArYyEe~---g~-----~~ 1038 (1416)
T KOG3617|consen 976 MYENDGDVVKAVKFFTRAQA---------FSNAIRLCKENDMKDRLANLALMSGGSDLVSAARYYEEL---GG-----YA 1038 (1416)
T ss_pred HhhhhHHHHHHHHHHHHHHH---------HHHHHHHHHhcCHHHHHHHHHhhcCchhHHHHHHHHHHc---ch-----hh
Confidence 99999999999999987643 333333332222 222233333332 21 23
Q ss_pred HHHHHHHHhcCCHHHHHHHH
Q 036072 577 NKFAADLSRAGRSYVLDELA 596 (631)
Q Consensus 577 ~~li~~~~~~g~~~~A~~l~ 596 (631)
...+..|-++|.+.+|+++.
T Consensus 1039 ~~AVmLYHkAGm~~kALelA 1058 (1416)
T KOG3617|consen 1039 HKAVMLYHKAGMIGKALELA 1058 (1416)
T ss_pred hHHHHHHHhhcchHHHHHHH
Confidence 45567778888888877764
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.19 E-value=0.0057 Score=63.94 Aligned_cols=351 Identities=15% Similarity=0.109 Sum_probs=200.0
Q ss_pred hhHHHHHHHhh-cCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 036072 226 RPAFRFFCWAG-DKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFEL 304 (631)
Q Consensus 226 ~~A~~~f~~~~-~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~ 304 (631)
..|...|.... -.+ +|-+.|..-..+|+..|+|++|++=-.+-.+..+.=+..|+....++.-.|++++|+..|.+
T Consensus 19 ~~ai~~~t~ai~l~p---~nhvlySnrsaa~a~~~~~~~al~da~k~~~l~p~w~kgy~r~Gaa~~~lg~~~eA~~ay~~ 95 (539)
T KOG0548|consen 19 ETAIRLFTEAIMLSP---TNHVLYSNRSAAYASLGSYEKALKDATKTRRLNPDWAKGYSRKGAALFGLGDYEEAILAYSE 95 (539)
T ss_pred HHHHHHHHHHHccCC---CccchhcchHHHHHHHhhHHHHHHHHHHHHhcCCchhhHHHHhHHHHHhcccHHHHHHHHHH
Confidence 45788776543 233 37788999999999999999998877777777665567999999999999999999999999
Q ss_pred HHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHH------HHhc----ccCCChhhHHHHHHHHHhc----------CCH
Q 036072 305 MNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFD------KLKH----RFTPNLTTYTVLLGGWCRV----------KNL 364 (631)
Q Consensus 305 m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~------~m~~----~~~p~~~~y~~Li~~~~~~----------g~~ 364 (631)
-++.. +.+...++.+..++... . .+.+.|. .+.. +.......|..++..+-+. .++
T Consensus 96 GL~~d-~~n~~L~~gl~~a~~~~--~-~~~~~~~~p~~~~~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~~~l~d~r~ 171 (539)
T KOG0548|consen 96 GLEKD-PSNKQLKTGLAQAYLED--Y-AADQLFTKPYFHEKLANLPLTNYSLSDPAYVKILEIIQKNPTSLKLYLNDPRL 171 (539)
T ss_pred HhhcC-CchHHHHHhHHHhhhHH--H-HhhhhccCcHHHHHhhcChhhhhhhccHHHHHHHHHhhcCcHhhhcccccHHH
Confidence 98874 55666777787777211 0 0111111 1110 0011122333333332221 111
Q ss_pred HHHHHHHHHH-----HHcC-------CCCC----------------------HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036072 365 MEAGRVWNEM-----IDKG-------FKPD----------------------VVAHNIMLEGLLKIGKRSDAIKLFEVMK 410 (631)
Q Consensus 365 ~~A~~l~~~m-----~~~g-------~~p~----------------------~~ty~~li~~~~~~g~~~~A~~ll~~m~ 410 (631)
..|...+... ...| ..|. ..-+..+.++..+..+++.|++-+....
T Consensus 172 m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~~k~~a~~ek~lgnaaykkk~f~~a~q~y~~a~ 251 (539)
T KOG0548|consen 172 MKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERRVKEKAHKEKELGNAAYKKKDFETAIQHYAKAL 251 (539)
T ss_pred HHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHHHHHhhhHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 2222211110 0001 1110 1123344455555566666666665554
Q ss_pred HcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHH-------HHHHHHhcCC
Q 036072 411 AKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNA-------LIKLMKIQKM 483 (631)
Q Consensus 411 ~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~-------li~~~~~~g~ 483 (631)
+.. . +..-++....+|...|.+.++...-..-.+.|-. ...-|+. +-.+|.+.++
T Consensus 252 el~---~--------------~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~ 313 (539)
T KOG0548|consen 252 ELA---T--------------DITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKRED 313 (539)
T ss_pred hHh---h--------------hhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHh
Confidence 432 2 2223344455566666666555555554444322 1112222 2234555667
Q ss_pred hhHHHHHHHHHHHCCCCCCHHHH-------------------------HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 036072 484 PDEAVRIYKEMVRSGFKPTIHTY-------------------------NMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD 538 (631)
Q Consensus 484 ~~~A~~l~~~m~~~g~~p~~~t~-------------------------~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 538 (631)
++.|+..|.+.......|+..+- ..-...+.+.|++..|++.|.++++.... |.
T Consensus 314 ~~~ai~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~P~-Da 392 (539)
T KOG0548|consen 314 YEGAIKYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRDPE-DA 392 (539)
T ss_pred HHHHHHHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCc-hh
Confidence 77777777776654333332221 11234466778888888888888877633 77
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 036072 539 NSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603 (631)
Q Consensus 539 ~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 603 (631)
..|..-.-+|.+.|.+..|++-.+..++.. ++...-|..=..++....+++.|++.|.+-.+..
T Consensus 393 ~lYsNRAac~~kL~~~~~aL~Da~~~ieL~-p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 393 RLYSNRAACYLKLGEYPEALKDAKKCIELD-PNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 888888888888888888888777777652 2222234444445555556777777776665544
|
|
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.009 Score=58.99 Aligned_cols=301 Identities=11% Similarity=0.034 Sum_probs=181.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHH-HHHHH
Q 036072 246 RTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINC-LLENL 324 (631)
Q Consensus 246 ~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~-Ll~~~ 324 (631)
.-.--+-+.+...|++.+|+.-|....+.++.+-.++-.-...|...|+-..|+.=+...++. +||...-.. -...+
T Consensus 39 ekhlElGk~lla~~Q~sDALt~yHaAve~dp~~Y~aifrRaT~yLAmGksk~al~Dl~rVlel--KpDF~~ARiQRg~vl 116 (504)
T KOG0624|consen 39 EKHLELGKELLARGQLSDALTHYHAAVEGDPNNYQAIFRRATVYLAMGKSKAALQDLSRVLEL--KPDFMAARIQRGVVL 116 (504)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhcCCccchhhHHHHHhc--CccHHHHHHHhchhh
Confidence 333345666777899999999999888876655555555667788889888888888888876 566543221 23456
Q ss_pred HcCCChHHHHHHHHHHhcccCC-------------Chhh--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 036072 325 GRSKLPKEAQLLFDKLKHRFTP-------------NLTT--YTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIM 389 (631)
Q Consensus 325 ~~~g~~~~A~~l~~~m~~~~~p-------------~~~~--y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~l 389 (631)
.+.|.++.|..=|+.+.+..+. .... ....+..+.-.|+...|+..+..+.+.. .-|...|..-
T Consensus 117 lK~Gele~A~~DF~~vl~~~~s~~~~~eaqskl~~~~e~~~l~~ql~s~~~~GD~~~ai~~i~~llEi~-~Wda~l~~~R 195 (504)
T KOG0624|consen 117 LKQGELEQAEADFDQVLQHEPSNGLVLEAQSKLALIQEHWVLVQQLKSASGSGDCQNAIEMITHLLEIQ-PWDASLRQAR 195 (504)
T ss_pred hhcccHHHHHHHHHHHHhcCCCcchhHHHHHHHHhHHHHHHHHHHHHHHhcCCchhhHHHHHHHHHhcC-cchhHHHHHH
Confidence 7889999999999887653221 1111 1223444555677777777777777642 2355566666
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHH
Q 036072 390 LEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGL 469 (631)
Q Consensus 390 i~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 469 (631)
..+|...|++..|+.=+...-+. ..| +...+-.+-..+...|+.+.++...++..+. .||..
T Consensus 196 akc~i~~~e~k~AI~Dlk~askL--s~D--------------nTe~~ykis~L~Y~vgd~~~sL~~iRECLKl--dpdHK 257 (504)
T KOG0624|consen 196 AKCYIAEGEPKKAIHDLKQASKL--SQD--------------NTEGHYKISQLLYTVGDAENSLKEIRECLKL--DPDHK 257 (504)
T ss_pred HHHHHhcCcHHHHHHHHHHHHhc--ccc--------------chHHHHHHHHHHHhhhhHHHHHHHHHHHHcc--Ccchh
Confidence 67777777777777655544332 222 4445556666777777777777777776553 34432
Q ss_pred H----HHHH---H------HHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 036072 470 T----YNAL---I------KLMKIQKMPDEAVRIYKEMVRSGFKPT---IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533 (631)
Q Consensus 470 t----~~~l---i------~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g 533 (631)
. |-.| . ......+++.++++-.+...+..-.-. ...+..+-.++...|++.+|++...+.++..
T Consensus 258 ~Cf~~YKklkKv~K~les~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d 337 (504)
T KOG0624|consen 258 LCFPFYKKLKKVVKSLESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDID 337 (504)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcC
Confidence 1 1111 1 112334455555555555554321111 1223344555556666777777666666542
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 036072 534 CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568 (631)
Q Consensus 534 ~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g 568 (631)
.. |+.++.--..+|.-...+++|+.-|+...+.+
T Consensus 338 ~~-dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 338 PD-DVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred ch-HHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 11 35666666666666666777777666666543
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.00016 Score=68.83 Aligned_cols=158 Identities=10% Similarity=-0.049 Sum_probs=106.9
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCC
Q 036072 249 NSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSK 328 (631)
Q Consensus 249 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g 328 (631)
...-..+--.|+-+....+..........+....+..+....+.|++..|+..|.+..... ++|..+|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~-p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAYPKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLA-PTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccCcccHHHHHHHHHHHHHhcchHHHHHHHHHHhccC-CCChhhhhHHHHHHHHcc
Confidence 3444555555666666666665555545566666667777777777777777777777655 667777777777777777
Q ss_pred ChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 036072 329 LPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEV 408 (631)
Q Consensus 329 ~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~ 408 (631)
+.+.|..-|.+..+-..-+...+|.|...|.-.|+++.|..++......+.. |...-..+.......|++++|..+...
T Consensus 149 r~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~a-d~~v~~NLAl~~~~~g~~~~A~~i~~~ 227 (257)
T COG5010 149 RFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAA-DSRVRQNLALVVGLQGDFREAEDIAVQ 227 (257)
T ss_pred ChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCC-chHHHHHHHHHHhhcCChHHHHhhccc
Confidence 7777777777776655556667777777777777777777777777765432 455555666667777777777776544
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.18 E-value=0.0012 Score=71.08 Aligned_cols=235 Identities=14% Similarity=0.093 Sum_probs=175.9
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHH
Q 036072 280 ETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWC 359 (631)
Q Consensus 280 ~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~ 359 (631)
..-..+...+...|-...|+.+|+++. .|..+|.+|+..|+..+|..+..+..+ -+|+...|..+.+...
T Consensus 399 q~q~~laell~slGitksAl~I~Erle---------mw~~vi~CY~~lg~~~kaeei~~q~le-k~~d~~lyc~LGDv~~ 468 (777)
T KOG1128|consen 399 QLQRLLAELLLSLGITKSALVIFERLE---------MWDPVILCYLLLGQHGKAEEINRQELE-KDPDPRLYCLLGDVLH 468 (777)
T ss_pred hHHHHHHHHHHHcchHHHHHHHHHhHH---------HHHHHHHHHHHhcccchHHHHHHHHhc-CCCcchhHHHhhhhcc
Confidence 455667788888999999999998764 466788899999999999998888777 5788899999998888
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHH
Q 036072 360 RVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCL 439 (631)
Q Consensus 360 ~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~l 439 (631)
.---+++|+++.+....+ +-..+.......++++++.+.|+.-.+...- ...+|-.+
T Consensus 469 d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~npl----------------q~~~wf~~ 525 (777)
T KOG1128|consen 469 DPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPL----------------QLGTWFGL 525 (777)
T ss_pred ChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCcc----------------chhHHHhc
Confidence 888889999998876543 1111222223468899999988876654211 23455556
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 036072 440 ITGFGNRRRMDIVYDLLKEMEERGCPP-DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518 (631)
Q Consensus 440 i~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~ 518 (631)
.-+..+.+++..|.+.|.....- .| +...||.+-.+|.+.++-.+|...+.+..+.+ .-+...|...+....+.|.
T Consensus 526 G~~ALqlek~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn-~~~w~iWENymlvsvdvge 602 (777)
T KOG1128|consen 526 GCAALQLEKEQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCN-YQHWQIWENYMLVSVDVGE 602 (777)
T ss_pred cHHHHHHhhhHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcC-CCCCeeeechhhhhhhccc
Confidence 66677889999999999887764 34 46789999999999999999999999999877 4456667777778889999
Q ss_pred HHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHH
Q 036072 519 YEMGRKVWDEMIRRG-CCPDDNSYTVLIGGLIS 550 (631)
Q Consensus 519 ~~~A~~~~~~m~~~g-~~p~~~t~~~li~~~~~ 550 (631)
+++|.+.+..+.+.. ..-|......++....+
T Consensus 603 ~eda~~A~~rll~~~~~~~d~~vl~~iv~~~~~ 635 (777)
T KOG1128|consen 603 FEDAIKAYHRLLDLRKKYKDDEVLLIIVRTVLE 635 (777)
T ss_pred HHHHHHHHHHHHHhhhhcccchhhHHHHHHHHh
Confidence 999999999887531 11255555555555443
|
|
| >KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.021 Score=62.33 Aligned_cols=343 Identities=13% Similarity=0.037 Sum_probs=220.5
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcc--cCCChhhHHHH
Q 036072 277 LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR--FTPNLTTYTVL 354 (631)
Q Consensus 277 ~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~--~~p~~~~y~~L 354 (631)
.+..+|..+.-+....|+++.+.+.|+.....- --..+.|+.+-..|...|.-..|..+++.-... .++++..+-..
T Consensus 321 nd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~-~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~Lma 399 (799)
T KOG4162|consen 321 NDAAIFDHLTFALSRCGQFEVLAEQFEQALPFS-FGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVLLMA 399 (799)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhh-hhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHHHHH
Confidence 367788888899999999999999999987654 345677888888899999999999998875432 24455555555
Q ss_pred HHHHHh-cCCHHHHHHHHHHHHHc--CC--CCCHHHHHHHHHHHHHc-----------CCHHHHHHHHHHHHHc-CCCCc
Q 036072 355 LGGWCR-VKNLMEAGRVWNEMIDK--GF--KPDVVAHNIMLEGLLKI-----------GKRSDAIKLFEVMKAK-GPSPN 417 (631)
Q Consensus 355 i~~~~~-~g~~~~A~~l~~~m~~~--g~--~p~~~ty~~li~~~~~~-----------g~~~~A~~ll~~m~~~-g~~p~ 417 (631)
-..|.+ .+.+++++++-.+..+. |. ......|..+--+|... ....++++.+++..+. +-.|+
T Consensus 400 sklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~~a~~~seR~~~h~kslqale~av~~d~~dp~ 479 (799)
T KOG4162|consen 400 SKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQARQANLKSERDALHKKSLQALEEAVQFDPTDPL 479 (799)
T ss_pred HHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhhcCCChHHHHHHHHHHHHHHHHHHhcCCCCch
Confidence 555544 36777777777666652 11 11233344444344321 1245778888887765 35577
Q ss_pred HHHHHHHHHHHhhc------------------CHHHHHHHHHHHhccCCHHHHHHHHHHHHHc-CC--------------
Q 036072 418 VRSYTIMIWKFCKQ------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEER-GC-------------- 464 (631)
Q Consensus 418 ~~~~~~li~~~~~~------------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~-------------- 464 (631)
+..|-.+-.+..+. +...|.-|.-.+.-.+++.+|+.+.+...+. |.
T Consensus 480 ~if~lalq~A~~R~l~sAl~~~~eaL~l~~~~~~~~whLLALvlSa~kr~~~Al~vvd~al~E~~~N~~l~~~~~~i~~~ 559 (799)
T KOG4162|consen 480 VIFYLALQYAEQRQLTSALDYAREALALNRGDSAKAWHLLALVLSAQKRLKEALDVVDAALEEFGDNHVLMDGKIHIELT 559 (799)
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHhhhhhhhchhhhhhhhh
Confidence 77776665554443 6778888888888889999999988765432 21
Q ss_pred ----CCCHHHHHHHHHHHHh---------cC--------------ChhHHHHHHHHHH--------HCC---------CC
Q 036072 465 ----PPDGLTYNALIKLMKI---------QK--------------MPDEAVRIYKEMV--------RSG---------FK 500 (631)
Q Consensus 465 ----~p~~~t~~~li~~~~~---------~g--------------~~~~A~~l~~~m~--------~~g---------~~ 500 (631)
.-...|...++..+-. .| +..+|......+. ..| +.
T Consensus 560 ~~~~e~~l~t~~~~L~~we~~~~~q~~~~~g~~~~lk~~l~la~~q~~~a~s~sr~ls~l~a~~~~~~~se~~Lp~s~~~ 639 (799)
T KOG4162|consen 560 FNDREEALDTCIHKLALWEAEYGVQQTLDEGKLLRLKAGLHLALSQPTDAISTSRYLSSLVASQLKSAGSELKLPSSTVL 639 (799)
T ss_pred cccHHHHHHHHHHHHHHHHhhhhHhhhhhhhhhhhhhcccccCcccccccchhhHHHHHHHHhhhhhcccccccCccccc
Confidence 0011223333332220 00 1111111111110 011 01
Q ss_pred --CC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 036072 501 --PT------IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP 572 (631)
Q Consensus 501 --p~------~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~ 572 (631)
|+ ...|......+.+.++.++|...+.+..... .-....|......+...|+.++|.+.|......+ +-+
T Consensus 640 ~~~~~~~~~~~~lwllaa~~~~~~~~~~~a~~CL~Ea~~~~-~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ld-P~h 717 (799)
T KOG4162|consen 640 PGPDSLWYLLQKLWLLAADLFLLSGNDDEARSCLLEASKID-PLSASVYYLRGLLLEVKGQLEEAKEAFLVALALD-PDH 717 (799)
T ss_pred CCCCchHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHhcc-hhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcC-CCC
Confidence 22 2345667777888899999987777776642 2356677777777888999999999999998754 334
Q ss_pred HHHHHHHHHHHHhcCCHHHHHH--HHHHHHhcCCCchHHHHHHHHHhhhhhhh
Q 036072 573 VLDYNKFAADLSRAGRSYVLDE--LAQKMRFSGKFEVSNVLARWAETTKNRVY 623 (631)
Q Consensus 573 ~~~~~~li~~~~~~g~~~~A~~--l~~~m~~~g~~~~~~~l~~~~~~~k~~~~ 623 (631)
+....++..++.+.|+...|.. ++..+-+-+. ...++-...++++++...
T Consensus 718 v~s~~Ala~~lle~G~~~la~~~~~L~dalr~dp-~n~eaW~~LG~v~k~~Gd 769 (799)
T KOG4162|consen 718 VPSMTALAELLLELGSPRLAEKRSLLSDALRLDP-LNHEAWYYLGEVFKKLGD 769 (799)
T ss_pred cHHHHHHHHHHHHhCCcchHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHccc
Confidence 5678899999999999888888 8888887775 334444466666665543
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.16 E-value=0.0014 Score=62.52 Aligned_cols=171 Identities=15% Similarity=0.174 Sum_probs=98.8
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCH
Q 036072 370 VWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRM 449 (631)
Q Consensus 370 l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~ 449 (631)
+.+.+.......+......-...|++.|++++|++...... ..+....+ +..+.+..+.
T Consensus 95 l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~----~lE~~Al~-----------------VqI~lk~~r~ 153 (299)
T KOG3081|consen 95 LYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE----NLEAAALN-----------------VQILLKMHRF 153 (299)
T ss_pred HHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc----hHHHHHHH-----------------HHHHHHHHHH
Confidence 34444444334343444444456777777777777665421 11111111 2233444567
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 036072 450 DIVYDLLKEMEERGCPPDGLTYNALIKLMKI----QKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525 (631)
Q Consensus 450 ~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~ 525 (631)
+-|.+.++.|.+- -+..|.+-|..+|.+ .+....|.-+|++|.++ ..|+..+.+....++...|++++|..+
T Consensus 154 d~A~~~lk~mq~i---ded~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~l 229 (299)
T KOG3081|consen 154 DLAEKELKKMQQI---DEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESL 229 (299)
T ss_pred HHHHHHHHHHHcc---chHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHH
Confidence 7777777777764 245566666666543 34567777777777664 467777777777777778888888888
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHHH
Q 036072 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRSG-EAYKYLEEMLE 566 (631)
Q Consensus 526 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~-~A~~ll~~m~~ 566 (631)
+++...+... ++.+...+|.+-...|... --.+.+.+++.
T Consensus 230 L~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~ 270 (299)
T KOG3081|consen 230 LEEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQLKL 270 (299)
T ss_pred HHHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHh
Confidence 8777776444 4555555554444445443 33445555554
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.13 E-value=0.0019 Score=69.29 Aligned_cols=337 Identities=15% Similarity=0.162 Sum_probs=180.5
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCHH-HHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCC
Q 036072 251 MMSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKL 329 (631)
Q Consensus 251 li~~~~~~g~~~~A~~l~~~m~~~g~~~~~-~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~ 329 (631)
.|..|....+|++++.+-+ ..|.|.-+ .-.+.++++...|+-++|-++- .. +-.+ -..|..|.+.|.
T Consensus 563 aigmy~~lhkwde~i~lae---~~~~p~~eklk~sy~q~l~dt~qd~ka~elk----~s----dgd~-laaiqlyika~~ 630 (1636)
T KOG3616|consen 563 AIGMYQELHKWDEAIALAE---AKGHPALEKLKRSYLQALMDTGQDEKAAELK----ES----DGDG-LAAIQLYIKAGK 630 (1636)
T ss_pred HHHHHHHHHhHHHHHHHHH---hcCChHHHHHHHHHHHHHHhcCchhhhhhhc----cc----cCcc-HHHHHHHHHcCC
Confidence 4445555555565555432 23443222 3445566666667666665431 11 1111 235677888888
Q ss_pred hHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 036072 330 PKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVM 409 (631)
Q Consensus 330 ~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m 409 (631)
+..|.+....-. .+..|..+...+..++.+..-+++|-++|+++.+ +.-.+.+|-+..-+.+|+++-+-.
T Consensus 631 p~~a~~~a~n~~-~l~~de~il~~ia~alik~elydkagdlfeki~d---------~dkale~fkkgdaf~kaielarfa 700 (1636)
T KOG3616|consen 631 PAKAARAALNDE-ELLADEEILEHIAAALIKGELYDKAGDLFEKIHD---------FDKALECFKKGDAFGKAIELARFA 700 (1636)
T ss_pred chHHHHhhcCHH-HhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC---------HHHHHHHHHcccHHHHHHHHHHhh
Confidence 877765443211 1223555566666666666666777777766653 222333333333344444433221
Q ss_pred HH---------cCCC-CcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 036072 410 KA---------KGPS-PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMK 479 (631)
Q Consensus 410 ~~---------~g~~-p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~ 479 (631)
-- -|.. --...+...|+.|...+ ..-..|.+....+.|.+|+.+++.+.+... -..-|..+...|+
T Consensus 701 fp~evv~lee~wg~hl~~~~q~daainhfiea~--~~~kaieaai~akew~kai~ildniqdqk~--~s~yy~~iadhya 776 (1636)
T KOG3616|consen 701 FPEEVVKLEEAWGDHLEQIGQLDAAINHFIEAN--CLIKAIEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYA 776 (1636)
T ss_pred CcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhh--hHHHHHHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhc
Confidence 00 0000 00111122222222211 111234556667889999999998887633 3345777888899
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 036072 480 IQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYK 559 (631)
Q Consensus 480 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ 559 (631)
..|+++.|.++|.+. ..++-.|.+|.+.|+|+.|.++-.+.. |.......|-+-..-+-++|++.+|.+
T Consensus 777 n~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla~e~~--~~e~t~~~yiakaedldehgkf~eaeq 845 (1636)
T KOG3616|consen 777 NKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLAEECH--GPEATISLYIAKAEDLDEHGKFAEAEQ 845 (1636)
T ss_pred cchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHHHHhc--CchhHHHHHHHhHHhHHhhcchhhhhh
Confidence 999999999988653 235667888999999999888876654 333345555555555556666666655
Q ss_pred HHHH---------HH-HCCC-----------CCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC-chHHHHH---
Q 036072 560 YLEE---------ML-EKGM-----------KAP--VLDYNKFAADLSRAGRSYVLDELAQKMRFSGKF-EVSNVLA--- 612 (631)
Q Consensus 560 ll~~---------m~-~~g~-----------~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-~~~~~l~--- 612 (631)
++-. |- +.|. .|+ ..|...+..-|...|+...|++-|-+. |.+ ..-|++.
T Consensus 846 lyiti~~p~~aiqmydk~~~~ddmirlv~k~h~d~l~dt~~~f~~e~e~~g~lkaae~~flea---~d~kaavnmyk~s~ 922 (1636)
T KOG3616|consen 846 LYITIGEPDKAIQMYDKHGLDDDMIRLVEKHHGDHLHDTHKHFAKELEAEGDLKAAEEHFLEA---GDFKAAVNMYKASE 922 (1636)
T ss_pred eeEEccCchHHHHHHHhhCcchHHHHHHHHhChhhhhHHHHHHHHHHHhccChhHHHHHHHhh---hhHHHHHHHhhhhh
Confidence 4321 11 1111 122 224456666777778877777665433 222 2334442
Q ss_pred HHHHhhhhhhhccCc
Q 036072 613 RWAETTKNRVYRKDR 627 (631)
Q Consensus 613 ~~~~~~k~~~~~~~~ 627 (631)
-|.+.+.....+..+
T Consensus 923 lw~dayriaktegg~ 937 (1636)
T KOG3616|consen 923 LWEDAYRIAKTEGGA 937 (1636)
T ss_pred hHHHHHHHHhccccc
Confidence 577766665555444
|
|
| >KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00017 Score=77.41 Aligned_cols=210 Identities=14% Similarity=0.094 Sum_probs=96.0
Q ss_pred HHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 036072 320 LLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399 (631)
Q Consensus 320 Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~ 399 (631)
+...+...|-...|..+|+++ ..|..+|.+|+..|+..+|..+..+..+ -+||...|..+.+......-+
T Consensus 404 laell~slGitksAl~I~Erl--------emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv~~d~s~y 473 (777)
T KOG1128|consen 404 LAELLLSLGITKSALVIFERL--------EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDVLHDPSLY 473 (777)
T ss_pred HHHHHHHcchHHHHHHHHHhH--------HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhhccChHHH
Confidence 344444555555555555432 2355555555555555555555544444 244444444444443333334
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 036072 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMK 479 (631)
Q Consensus 400 ~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~ 479 (631)
++|.++.+..... +-..+.....+.++++++.+.|+.-.+... ....+|-.+-.+..
T Consensus 474 EkawElsn~~sar----------------------A~r~~~~~~~~~~~fs~~~~hle~sl~~np-lq~~~wf~~G~~AL 530 (777)
T KOG1128|consen 474 EKAWELSNYISAR----------------------AQRSLALLILSNKDFSEADKHLERSLEINP-LQLGTWFGLGCAAL 530 (777)
T ss_pred HHHHHHhhhhhHH----------------------HHHhhccccccchhHHHHHHHHHHHhhcCc-cchhHHHhccHHHH
Confidence 4444444433211 000011111223455555555554333211 12334444444444
Q ss_pred hcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 036072 480 IQKMPDEAVRIYKEMVRSGFKP-TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAY 558 (631)
Q Consensus 480 ~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~ 558 (631)
+.++++.|.+.|...... .| +...||.+-.+|.+.++-.+|...+.+..+.+. -+-..|...+-...+.|.+++|+
T Consensus 531 qlek~q~av~aF~rcvtL--~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~-~~w~iWENymlvsvdvge~eda~ 607 (777)
T KOG1128|consen 531 QLEKEQAAVKAFHRCVTL--EPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNY-QHWQIWENYMLVSVDVGEFEDAI 607 (777)
T ss_pred HHhhhHHHHHHHHHHhhc--CCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCC-CCCeeeechhhhhhhcccHHHHH
Confidence 555555555555554442 22 234455555555555555555555555555432 23444444444455555555555
Q ss_pred HHHHHHH
Q 036072 559 KYLEEML 565 (631)
Q Consensus 559 ~ll~~m~ 565 (631)
+.+.++.
T Consensus 608 ~A~~rll 614 (777)
T KOG1128|consen 608 KAYHRLL 614 (777)
T ss_pred HHHHHHH
Confidence 5555554
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=98.12 E-value=0.00029 Score=79.00 Aligned_cols=149 Identities=13% Similarity=0.075 Sum_probs=130.0
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHH
Q 036072 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINC 319 (631)
Q Consensus 240 g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~ 319 (631)
.+..++..+-.|..+..+.|.+++|..+++...+..+-+...+..+...+.+.+++++|+..++...... +-+......
T Consensus 81 ~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~-p~~~~~~~~ 159 (694)
T PRK15179 81 RYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGG-SSSAREILL 159 (694)
T ss_pred hccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcC-CCCHHHHHH
Confidence 3456789999999999999999999999999999988888999999999999999999999999999986 556777788
Q ss_pred HHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036072 320 LLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIML 390 (631)
Q Consensus 320 Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li 390 (631)
+..++.+.|++++|..+|+++....+.+..++..+...+-+.|+.++|...|+...+. ..+....|+..+
T Consensus 160 ~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~ 229 (694)
T PRK15179 160 EAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRL 229 (694)
T ss_pred HHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHH
Confidence 8889999999999999999998765666889999999999999999999999999875 234445555444
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.00015 Score=68.67 Aligned_cols=119 Identities=10% Similarity=0.114 Sum_probs=80.0
Q ss_pred cCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHH-HHcCCC--hHHHH
Q 036072 258 ARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLEN-LGRSKL--PKEAQ 334 (631)
Q Consensus 258 ~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~-~~~~g~--~~~A~ 334 (631)
.++.+++...++...+.++.+.+.|..+...|...|++++|...|+...+.. +.+...+..+..+ +...|+ .++|.
T Consensus 52 ~~~~~~~i~~l~~~L~~~P~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 52 QQTPEAQLQALQDKIRANPQNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred chhHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 4555666666666666666677777777777777777777777777777665 4456666666654 345555 46777
Q ss_pred HHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036072 335 LLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK 377 (631)
Q Consensus 335 ~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~ 377 (631)
+++++..+..+.+..++..+...+.+.|++++|...|+++.+.
T Consensus 131 ~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l 173 (198)
T PRK10370 131 EMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQKVLDL 173 (198)
T ss_pred HHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 7777776665666667777777777777777777777777664
|
|
| >KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=98.08 E-value=0.004 Score=67.77 Aligned_cols=222 Identities=14% Similarity=0.095 Sum_probs=141.4
Q ss_pred hhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-C--------CCHHHHHHHHHHHHHccCHH
Q 036072 226 RPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG-L--------LSMETFKIAMNAFAAAKERK 296 (631)
Q Consensus 226 ~~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g-~--------~~~~~~~~li~~~~~~g~~~ 296 (631)
+.|.+-...+. +..+|..|.+.+.+.++++-|.-.+..|.... . .+.++=..+.......|..+
T Consensus 745 D~AfksI~~Ik-------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgMlE 817 (1416)
T KOG3617|consen 745 DAAFKSIQFIK-------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGMLE 817 (1416)
T ss_pred HHHHHHHHHHh-------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhhHH
Confidence 34665555553 36899999999999999999888888876432 1 11133333444456789999
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036072 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMID 376 (631)
Q Consensus 297 ~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~ 376 (631)
+|+.+|...++. ..|=+.|-..|.+++|.++-+.-. ++. -..||......+-..++.+.|++.|++...
T Consensus 818 eA~~lYr~ckR~---------DLlNKlyQs~g~w~eA~eiAE~~D-RiH-Lr~Tyy~yA~~Lear~Di~~AleyyEK~~~ 886 (1416)
T KOG3617|consen 818 EALILYRQCKRY---------DLLNKLYQSQGMWSEAFEIAETKD-RIH-LRNTYYNYAKYLEARRDIEAALEYYEKAGV 886 (1416)
T ss_pred HHHHHHHHHHHH---------HHHHHHHHhcccHHHHHHHHhhcc-cee-hhhhHHHHHHHHHhhccHHHHHHHHHhcCC
Confidence 999999998874 334456777899999998865432 211 134666677777777888888887765321
Q ss_pred ----------cC---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHH
Q 036072 377 ----------KG---------FKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYT 437 (631)
Q Consensus 377 ----------~g---------~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~ 437 (631)
.. -..|...|...-..+-..|+.+.|+.+|...++ |-
T Consensus 887 hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D------------------------~f 942 (1416)
T KOG3617|consen 887 HAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD------------------------YF 942 (1416)
T ss_pred hHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh------------------------hh
Confidence 10 112344455555555566777777777766543 34
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHH
Q 036072 438 CLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMV 495 (631)
Q Consensus 438 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~ 495 (631)
++++..|-.|+.++|-.+-++-. |....-.|.+.|-..|++.+|...|.+..
T Consensus 943 s~VrI~C~qGk~~kAa~iA~esg------d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 943 SMVRIKCIQGKTDKAARIAEESG------DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred hheeeEeeccCchHHHHHHHhcc------cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 45555666677777766655421 33444456666667777777776665543
|
|
| >COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion] | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.00091 Score=63.78 Aligned_cols=128 Identities=14% Similarity=0.069 Sum_probs=69.7
Q ss_pred HHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcC
Q 036072 283 KIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVK 362 (631)
Q Consensus 283 ~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g 362 (631)
..+-..+...|+-+....+........ .-+....+.++....+.|++..|...|.+....-++|...|+.+.-+|.+.|
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~~-~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~G 148 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIAY-PKDRELLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLG 148 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhccC-cccHHHHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHcc
Confidence 334444444555555544444433221 3344444455566666666666666666666555566666666666666666
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036072 363 NLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412 (631)
Q Consensus 363 ~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~ 412 (631)
++++|..-|.+..+.- .-+...+|.|.-.+.-.|+.+.|..++......
T Consensus 149 r~~~Ar~ay~qAl~L~-~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~ 197 (257)
T COG5010 149 RFDEARRAYRQALELA-PNEPSIANNLGMSLLLRGDLEDAETLLLPAYLS 197 (257)
T ss_pred ChhHHHHHHHHHHHhc-cCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhC
Confidence 6666666666655541 113344555555555566666666666555544
|
|
| >PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional | Back alignment and domain information |
|---|
Probab=98.05 E-value=0.0016 Score=73.91 Aligned_cols=238 Identities=12% Similarity=0.106 Sum_probs=130.9
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHH
Q 036072 278 SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357 (631)
Q Consensus 278 ~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~ 357 (631)
+...+..|+..+...+++++|.++.+...+.. +-....|-.+...+...++...+..+ .++..
T Consensus 30 n~~a~~~Li~~~~~~~~~deai~i~~~~l~~~-P~~i~~yy~~G~l~~q~~~~~~~~lv----------------~~l~~ 92 (906)
T PRK14720 30 KFKELDDLIDAYKSENLTDEAKDICEEHLKEH-KKSISALYISGILSLSRRPLNDSNLL----------------NLIDS 92 (906)
T ss_pred hHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhC-CcceehHHHHHHHHHhhcchhhhhhh----------------hhhhh
Confidence 34566667777777777777777766555542 22222222222244444444433332 22222
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHH
Q 036072 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYT 437 (631)
Q Consensus 358 ~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~ 437 (631)
.....++.-+..+...|.+.+ -+..++-.+..+|-+.|+.++|..+++++.+.. |+ ++.+.|
T Consensus 93 ~~~~~~~~~ve~~~~~i~~~~--~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--~~--------------n~~aLN 154 (906)
T PRK14720 93 FSQNLKWAIVEHICDKILLYG--ENKLALRTLAEAYAKLNENKKLKGVWERLVKAD--RD--------------NPEIVK 154 (906)
T ss_pred cccccchhHHHHHHHHHHhhh--hhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--cc--------------cHHHHH
Confidence 223333333333333333321 123355666667777777777777777776643 33 445555
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 036072 438 CLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517 (631)
Q Consensus 438 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g 517 (631)
.+.-.|... ++++|..++.+.... +...+++..+.++|.++.... .-+...+
T Consensus 155 n~AY~~ae~-dL~KA~~m~~KAV~~---------------~i~~kq~~~~~e~W~k~~~~~-~~d~d~f----------- 206 (906)
T PRK14720 155 KLATSYEEE-DKEKAITYLKKAIYR---------------FIKKKQYVGIEEIWSKLVHYN-SDDFDFF----------- 206 (906)
T ss_pred HHHHHHHHh-hHHHHHHHHHHHHHH---------------HHhhhcchHHHHHHHHHHhcC-cccchHH-----------
Confidence 566666666 677776666655443 455566677777777776642 1122222
Q ss_pred CHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036072 518 NYEMGRKVWDEMIRR-GCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584 (631)
Q Consensus 518 ~~~~A~~~~~~m~~~-g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~ 584 (631)
.++.+.+... |..--..++-.+...|-..++++++..+++.+++.. +-|.....-++.+|.
T Consensus 207 -----~~i~~ki~~~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~-~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 207 -----LRIERKVLGHREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHD-NKNNKAREELIRFYK 268 (906)
T ss_pred -----HHHHHHHHhhhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcC-CcchhhHHHHHHHHH
Confidence 2222222221 222234556666777888899999999999999875 335556666777765
|
|
| >KOG3616 consensus Selective LIM binding factor [Transcription] | Back alignment and domain information |
|---|
Probab=98.04 E-value=0.0016 Score=69.68 Aligned_cols=192 Identities=13% Similarity=0.058 Sum_probs=121.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHH
Q 036072 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAA 434 (631)
Q Consensus 355 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~ 434 (631)
|.+....+.|.+|+.+++.+.+... -..-|..+...|...|+++.|.++|.+.-
T Consensus 739 ieaai~akew~kai~ildniqdqk~--~s~yy~~iadhyan~~dfe~ae~lf~e~~------------------------ 792 (1636)
T KOG3616|consen 739 IEAAIGAKEWKKAISILDNIQDQKT--ASGYYGEIADHYANKGDFEIAEELFTEAD------------------------ 792 (1636)
T ss_pred HHHHhhhhhhhhhHhHHHHhhhhcc--ccccchHHHHHhccchhHHHHHHHHHhcc------------------------
Confidence 4555667788888888888887632 23346677788888999999998886541
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036072 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514 (631)
Q Consensus 435 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~ 514 (631)
.++-.|.+|.+.|+|++|.++-.+. .|.......|-+-..-+-+.|++.+|.++|-.+- .|+ ..|.+|-
T Consensus 793 ~~~dai~my~k~~kw~da~kla~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~-----~aiqmyd 861 (1636)
T KOG3616|consen 793 LFKDAIDMYGKAGKWEDAFKLAEEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPD-----KAIQMYD 861 (1636)
T ss_pred hhHHHHHHHhccccHHHHHHHHHHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----Cch-----HHHHHHH
Confidence 2344578888899999998886654 3444455666666666778888888887775442 344 2456677
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 036072 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDE 594 (631)
Q Consensus 515 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 594 (631)
+.|..+..+++.++-.-. .-..|...+..-|...|+.++|..-|-+.- .|.+-++.|-..+.|++|-+
T Consensus 862 k~~~~ddmirlv~k~h~d---~l~dt~~~f~~e~e~~g~lkaae~~flea~---------d~kaavnmyk~s~lw~dayr 929 (1636)
T KOG3616|consen 862 KHGLDDDMIRLVEKHHGD---HLHDTHKHFAKELEAEGDLKAAEEHFLEAG---------DFKAAVNMYKASELWEDAYR 929 (1636)
T ss_pred hhCcchHHHHHHHHhChh---hhhHHHHHHHHHHHhccChhHHHHHHHhhh---------hHHHHHHHhhhhhhHHHHHH
Confidence 777777777666543221 122344455555666666666665543322 23444445555555554444
Q ss_pred H
Q 036072 595 L 595 (631)
Q Consensus 595 l 595 (631)
+
T Consensus 930 i 930 (1636)
T KOG3616|consen 930 I 930 (1636)
T ss_pred H
Confidence 3
|
|
| >PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional | Back alignment and domain information |
|---|
Probab=98.03 E-value=0.0011 Score=62.87 Aligned_cols=119 Identities=12% Similarity=0.166 Sum_probs=78.0
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HHcCC--HHHHH
Q 036072 447 RRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSY-FQTGN--YEMGR 523 (631)
Q Consensus 447 g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~-~~~g~--~~~A~ 523 (631)
++.+++...++...+... .|...|..+...|...|++++|...|++..+.. .-+...+..+..++ ...|+ .++|.
T Consensus 53 ~~~~~~i~~l~~~L~~~P-~~~~~w~~Lg~~~~~~g~~~~A~~a~~~Al~l~-P~~~~~~~~lA~aL~~~~g~~~~~~A~ 130 (198)
T PRK10370 53 QTPEAQLQALQDKIRANP-QNSEQWALLGEYYLWRNDYDNALLAYRQALQLR-GENAELYAALATVLYYQAGQHMTPQTR 130 (198)
T ss_pred hhHHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCCCcHHHH
Confidence 455566666655555432 366677777777777777777777777777653 23556666666653 45555 47777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 036072 524 KVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568 (631)
Q Consensus 524 ~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g 568 (631)
+++++..+.+.. +...+..+...+.+.|++++|...|+++.+..
T Consensus 131 ~~l~~al~~dP~-~~~al~~LA~~~~~~g~~~~Ai~~~~~aL~l~ 174 (198)
T PRK10370 131 EMIDKALALDAN-EVTALMLLASDAFMQADYAQAIELWQKVLDLN 174 (198)
T ss_pred HHHHHHHHhCCC-ChhHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 777777776544 56666777777777777777777777777653
|
|
| >KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=98.02 E-value=0.011 Score=61.77 Aligned_cols=339 Identities=15% Similarity=0.054 Sum_probs=217.2
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcC-HHHHHHHHHHHHcCCChH
Q 036072 253 SILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAG-VDTINCLLENLGRSKLPK 331 (631)
Q Consensus 253 ~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~-~~~~~~Ll~~~~~~g~~~ 331 (631)
.+.+..|+++.|+.+|.+.....+.+...|+.=..+|+..|++++|++=-..-++. .|+ ...|.....++.-.|+++
T Consensus 10 naa~s~~d~~~ai~~~t~ai~l~p~nhvlySnrsaa~a~~~~~~~al~da~k~~~l--~p~w~kgy~r~Gaa~~~lg~~~ 87 (539)
T KOG0548|consen 10 NAAFSSGDFETAIRLFTEAIMLSPTNHVLYSNRSAAYASLGSYEKALKDATKTRRL--NPDWAKGYSRKGAALFGLGDYE 87 (539)
T ss_pred HhhcccccHHHHHHHHHHHHccCCCccchhcchHHHHHHHhhHHHHHHHHHHHHhc--CCchhhHHHHhHHHHHhcccHH
Confidence 45567899999999999999888887778999999999999999998877666665 454 456888888888889999
Q ss_pred HHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHH--HHHcCCCCC--------HHHHHHHHHHHHHc-----
Q 036072 332 EAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNE--MIDKGFKPD--------VVAHNIMLEGLLKI----- 396 (631)
Q Consensus 332 ~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~--m~~~g~~p~--------~~ty~~li~~~~~~----- 396 (631)
+|..-|.+-.+..+.|...++-+..++.- +. .+.+.|.. |.. ++.-+ ..+|..++..+-+.
T Consensus 88 eA~~ay~~GL~~d~~n~~L~~gl~~a~~~--~~-~~~~~~~~p~~~~-~l~~~p~t~~~~~~~~~~~~l~~~~~~p~~l~ 163 (539)
T KOG0548|consen 88 EAILAYSEGLEKDPSNKQLKTGLAQAYLE--DY-AADQLFTKPYFHE-KLANLPLTNYSLSDPAYVKILEIIQKNPTSLK 163 (539)
T ss_pred HHHHHHHHHhhcCCchHHHHHhHHHhhhH--HH-HhhhhccCcHHHH-HhhcChhhhhhhccHHHHHHHHHhhcCcHhhh
Confidence 99999999877777788888888888711 11 11111110 000 11111 22344444443321
Q ss_pred --CCHHHHHHHHHHHHHc--------CC-------CCc---------HHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHH
Q 036072 397 --GKRSDAIKLFEVMKAK--------GP-------SPN---------VRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMD 450 (631)
Q Consensus 397 --g~~~~A~~ll~~m~~~--------g~-------~p~---------~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~ 450 (631)
...+...+....+... |. .|. ..-...-.. .+....-.-.+.++..+..+++
T Consensus 164 ~~l~d~r~m~a~~~l~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~d~~ee~~--~k~~a~~ek~lgnaaykkk~f~ 241 (539)
T KOG0548|consen 164 LYLNDPRLMKADGQLKGVDELLFYASGIEILASMAEPCKQEHNGFPIIEDNTEERR--VKEKAHKEKELGNAAYKKKDFE 241 (539)
T ss_pred cccccHHHHHHHHHHhcCccccccccccccCCCCCCcccccCCCCCccchhHHHHH--HHHhhhHHHHHHHHHHHhhhHH
Confidence 1111111111111110 00 010 000000000 0002233455667777778888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH-------HHHHHHHHHcCCHHHHH
Q 036072 451 IVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTY-------NMIMKSYFQTGNYEMGR 523 (631)
Q Consensus 451 ~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~-------~~Li~~~~~~g~~~~A~ 523 (631)
.|.+-+....+.. -+..-++....+|...|.+.++........+.|.. ...-| ..+..+|.+.++++.|+
T Consensus 242 ~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre-~rad~klIak~~~r~g~a~~k~~~~~~ai 318 (539)
T KOG0548|consen 242 TAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRE-LRADYKLIAKALARLGNAYTKREDYEGAI 318 (539)
T ss_pred HHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHH-HHHHHHHHHHHHHHhhhhhhhHHhHHHHH
Confidence 8888888877754 35555666777899999888888877777766532 12222 33444677778899999
Q ss_pred HHHHHHHHcCCCCCHHHH-------------------------HHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 036072 524 KVWDEMIRRGCCPDDNSY-------------------------TVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNK 578 (631)
Q Consensus 524 ~~~~~m~~~g~~p~~~t~-------------------------~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~ 578 (631)
..|.+.......|+..+= ..=...+.+.|++.+|++.|.+++... +-|...|..
T Consensus 319 ~~~~kaLte~Rt~~~ls~lk~~Ek~~k~~e~~a~~~pe~A~e~r~kGne~Fk~gdy~~Av~~YteAIkr~-P~Da~lYsN 397 (539)
T KOG0548|consen 319 KYYQKALTEHRTPDLLSKLKEAEKALKEAERKAYINPEKAEEEREKGNEAFKKGDYPEAVKHYTEAIKRD-PEDARLYSN 397 (539)
T ss_pred HHHHHHhhhhcCHHHHHHHHHHHHHHHHHHHHHhhChhHHHHHHHHHHHHHhccCHHHHHHHHHHHHhcC-CchhHHHHH
Confidence 999887765444433211 111345667899999999999999986 667888999
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHhcC
Q 036072 579 FAADLSRAGRSYVLDELAQKMRFSG 603 (631)
Q Consensus 579 li~~~~~~g~~~~A~~l~~~m~~~g 603 (631)
-.-+|.+.|.+..|+.-.+...+..
T Consensus 398 RAac~~kL~~~~~aL~Da~~~ieL~ 422 (539)
T KOG0548|consen 398 RAACYLKLGEYPEALKDAKKCIELD 422 (539)
T ss_pred HHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 9999999999999988776665543
|
|
| >KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=98.01 E-value=0.0063 Score=58.22 Aligned_cols=252 Identities=14% Similarity=0.102 Sum_probs=152.8
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHH-
Q 036072 254 ILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKE- 332 (631)
Q Consensus 254 ~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~- 332 (631)
-+--.|.+..++..-+...... .+.+.-..+-++|...|.+.....- ++... .+....+..+......-+..+.
T Consensus 17 n~fY~Gnyq~~ine~~~~~~~~-~~~e~d~y~~raylAlg~~~~~~~e---I~~~~-~~~lqAvr~~a~~~~~e~~~~~~ 91 (299)
T KOG3081|consen 17 NYFYLGNYQQCINEAEKFSSSK-TDVELDVYMYRAYLALGQYQIVISE---IKEGK-ATPLQAVRLLAEYLELESNKKSI 91 (299)
T ss_pred HHHHhhHHHHHHHHHHhhcccc-chhHHHHHHHHHHHHcccccccccc---ccccc-CChHHHHHHHHHHhhCcchhHHH
Confidence 3344566666665544443322 3344455566777777776544322 22222 2222222222222222222222
Q ss_pred HHHHHHHHhcc-cCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 333 AQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKA 411 (631)
Q Consensus 333 A~~l~~~m~~~-~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~ 411 (631)
..++.+.+... ...+......-...|+..+++++|++...... +......=+..+.+..+++-|.+.++.|.+
T Consensus 92 ~~~l~E~~a~~~~~sn~i~~l~aa~i~~~~~~~deAl~~~~~~~------~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~ 165 (299)
T KOG3081|consen 92 LASLYELVADSTDGSNLIDLLLAAIIYMHDGDFDEALKALHLGE------NLEAAALNVQILLKMHRFDLAEKELKKMQQ 165 (299)
T ss_pred HHHHHHHHHhhccchhHHHHHHhhHHhhcCCChHHHHHHHhccc------hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 23334444332 22333334444677899999999999987722 233344445567788899999999999987
Q ss_pred cCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHH
Q 036072 412 KGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIY 491 (631)
Q Consensus 412 ~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~ 491 (631)
- -+..|.+.|- +++|......+.+.+|.-+|++|.++ ..|+..+.+....++...|++++|..++
T Consensus 166 i---ded~tLtQLA-----------~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~lL 230 (299)
T KOG3081|consen 166 I---DEDATLTQLA-----------QAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAESLL 230 (299)
T ss_pred c---chHHHHHHHH-----------HHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHHHH
Confidence 4 2344444332 23344445566799999999999876 6789999999999999999999999999
Q ss_pred HHHHHCCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHHc
Q 036072 492 KEMVRSGFKPTIHTYNMIMKSYFQTGNY-EMGRKVWDEMIRR 532 (631)
Q Consensus 492 ~~m~~~g~~p~~~t~~~Li~~~~~~g~~-~~A~~~~~~m~~~ 532 (631)
++......+ +..+...+|-+-...|.- +-..+.+..+...
T Consensus 231 ~eaL~kd~~-dpetL~Nliv~a~~~Gkd~~~~~r~l~QLk~~ 271 (299)
T KOG3081|consen 231 EEALDKDAK-DPETLANLIVLALHLGKDAEVTERNLSQLKLS 271 (299)
T ss_pred HHHHhccCC-CHHHHHHHHHHHHHhCCChHHHHHHHHHHHhc
Confidence 999987533 456665555555555554 4445666666654
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.98 E-value=0.0023 Score=66.16 Aligned_cols=141 Identities=16% Similarity=0.054 Sum_probs=88.6
Q ss_pred HHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHH
Q 036072 356 GGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAV 435 (631)
Q Consensus 356 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~ 435 (631)
..+...|++++|+..++.+... .+-|..-+......+.+.++.++|.+.++.+... .|+. ...
T Consensus 314 ~~~~~~~~~d~A~~~l~~L~~~-~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l--~P~~--------------~~l 376 (484)
T COG4783 314 LQTYLAGQYDEALKLLQPLIAA-QPDNPYYLELAGDILLEANKAKEAIERLKKALAL--DPNS--------------PLL 376 (484)
T ss_pred HHHHHhcccchHHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCCc--------------cHH
Confidence 3444667777777777776664 2223444445556777777777777777777663 4442 122
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 036072 436 YTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515 (631)
Q Consensus 436 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~ 515 (631)
+-.+..+|.+.|++.+|..+++..... .+-|...|..|.++|...|+..++..-..++ |..
T Consensus 377 ~~~~a~all~~g~~~eai~~L~~~~~~-~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~------------------~~~ 437 (484)
T COG4783 377 QLNLAQALLKGGKPQEAIRILNRYLFN-DPEDPNGWDLLAQAYAELGNRAEALLARAEG------------------YAL 437 (484)
T ss_pred HHHHHHHHHhcCChHHHHHHHHHHhhc-CCCCchHHHHHHHHHHHhCchHHHHHHHHHH------------------HHh
Confidence 334556677777777777777776654 3346777777777777777777776665554 234
Q ss_pred cCCHHHHHHHHHHHHHc
Q 036072 516 TGNYEMGRKVWDEMIRR 532 (631)
Q Consensus 516 ~g~~~~A~~~~~~m~~~ 532 (631)
.|++++|...+....+.
T Consensus 438 ~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 438 AGRLEQAIIFLMRASQQ 454 (484)
T ss_pred CCCHHHHHHHHHHHHHh
Confidence 56677777766666553
|
|
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00096 Score=59.74 Aligned_cols=95 Identities=8% Similarity=-0.056 Sum_probs=68.8
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 036072 471 YNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLIS 550 (631)
Q Consensus 471 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 550 (631)
+..+...+...|++++|...|+...... +.+...|..+..++...|++++|...|+...+.... +...+..+..++..
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~-~~~a~~~lg~~l~~ 104 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQ-PWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDAS-HPEPVYQTGVCLKM 104 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHH
Confidence 4445666677788888888887777654 346677777777777788888888888877765432 66777777777777
Q ss_pred cCCHHHHHHHHHHHHHC
Q 036072 551 QDRSGEAYKYLEEMLEK 567 (631)
Q Consensus 551 ~g~~~~A~~ll~~m~~~ 567 (631)
.|+.++|...|+..++.
T Consensus 105 ~g~~~eAi~~~~~Al~~ 121 (144)
T PRK15359 105 MGEPGLAREAFQTAIKM 121 (144)
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 78888888888777765
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.94 E-value=0.00033 Score=61.85 Aligned_cols=95 Identities=12% Similarity=-0.019 Sum_probs=43.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHh
Q 036072 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCR 360 (631)
Q Consensus 281 ~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~ 360 (631)
....+...+...|++++|.+.|+.+...+ +.+...+..+...+...|++++|..+++...+..+.+...+..+...|..
T Consensus 19 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~ 97 (135)
T TIGR02552 19 QIYALAYNLYQQGRYDEALKLFQLLAAYD-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAAECLLA 97 (135)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH
Confidence 33344444444444444444444444432 23344444444444444444444444444433333344444444444444
Q ss_pred cCCHHHHHHHHHHHHH
Q 036072 361 VKNLMEAGRVWNEMID 376 (631)
Q Consensus 361 ~g~~~~A~~l~~~m~~ 376 (631)
.|++++|...|+...+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (135)
T TIGR02552 98 LGEPESALKALDLAIE 113 (135)
T ss_pred cCCHHHHHHHHHHHHH
Confidence 4555555554444444
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >PRK15359 type III secretion system chaperone protein SscB; Provisional | Back alignment and domain information |
|---|
Probab=97.93 E-value=0.00043 Score=61.99 Aligned_cols=106 Identities=8% Similarity=-0.074 Sum_probs=75.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcC
Q 036072 248 YNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS 327 (631)
Q Consensus 248 y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~ 327 (631)
+......+...|++++|...|+......+.+..++..+..++...|++++|+..|+...+.. +.+...+..+..++...
T Consensus 27 ~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~-p~~~~a~~~lg~~l~~~ 105 (144)
T PRK15359 27 VYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD-ASHPEPVYQTGVCLKMM 105 (144)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHHHc
Confidence 33455666777788888888888777777777777777777777788888887777777764 55667777777777777
Q ss_pred CChHHHHHHHHHHhcccCCChhhHHHH
Q 036072 328 KLPKEAQLLFDKLKHRFTPNLTTYTVL 354 (631)
Q Consensus 328 g~~~~A~~l~~~m~~~~~p~~~~y~~L 354 (631)
|+.++|...|+...+..+.+...|...
T Consensus 106 g~~~eAi~~~~~Al~~~p~~~~~~~~~ 132 (144)
T PRK15359 106 GEPGLAREAFQTAIKMSYADASWSEIR 132 (144)
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHH
Confidence 777777777777665544444444333
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.90 E-value=0.017 Score=64.59 Aligned_cols=130 Identities=13% Similarity=-0.018 Sum_probs=72.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLL--SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLE 322 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~--~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~ 322 (631)
...+....+.|++..+++.|..+.-...+.... -...|....-.|...++...|+.-|+...+.. +-|...|..+..
T Consensus 526 aeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGe 604 (1238)
T KOG1127|consen 526 AEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGE 604 (1238)
T ss_pred hhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHH
Confidence 445666666666666666666663333222221 11223334445555666666666666666554 456666777777
Q ss_pred HHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036072 323 NLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMI 375 (631)
Q Consensus 323 ~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~ 375 (631)
+|...|.+..|.++|.+...-.+.+...-.-....-+..|.+.+|+..+....
T Consensus 605 AY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYkeald~l~~ii 657 (1238)
T KOG1127|consen 605 AYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKEALDALGLII 657 (1238)
T ss_pred HHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 77777777777777766654322222222222334455667777776666554
|
|
| >PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional | Back alignment and domain information |
|---|
Probab=97.88 E-value=0.0018 Score=72.69 Aligned_cols=154 Identities=8% Similarity=0.013 Sum_probs=128.3
Q ss_pred HHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChh
Q 036072 270 EMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLT 349 (631)
Q Consensus 270 ~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~ 349 (631)
......+.+.+++-.|.......|..++|+.+++...+.. +-+......+...+.+.+.+++|...+++.....+.+..
T Consensus 77 ~~~~~~~~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~~~-Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~ 155 (694)
T PRK15179 77 DYVRRYPHTELFQVLVARALEAAHRSDEGLAVWRGIHQRF-PDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAR 155 (694)
T ss_pred HHHHhccccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHH
Confidence 3334444568899999999999999999999999999974 445666777889999999999999999999988788889
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 036072 350 TYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIW 426 (631)
Q Consensus 350 ~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~ 426 (631)
..+.+..++.+.|++++|..+|+++...+ .-+..++..+-..+.+.|+.++|...|+...+. ..+...-|+..+.
T Consensus 156 ~~~~~a~~l~~~g~~~~A~~~y~~~~~~~-p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~-~~~~~~~~~~~~~ 230 (694)
T PRK15179 156 EILLEAKSWDEIGQSEQADACFERLSRQH-PEFENGYVGWAQSLTRRGALWRARDVLQAGLDA-IGDGARKLTRRLV 230 (694)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-hCcchHHHHHHHH
Confidence 99999999999999999999999999842 234788889999999999999999999998765 3344455555443
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.87 E-value=0.00041 Score=72.18 Aligned_cols=125 Identities=16% Similarity=0.221 Sum_probs=103.5
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036072 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514 (631)
Q Consensus 435 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~ 514 (631)
...+|+..+...++++.|.++|+++.+.. |+ ....++..+...++..+|.+++++..+.. +-+......-...|.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~--pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD--PE--VAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC--Cc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 34456777778899999999999999874 44 44457788888889999999999998753 446777788888899
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036072 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEML 565 (631)
Q Consensus 515 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~ 565 (631)
+.++++.|.++.+++.+.... +..+|..|..+|...|++++|+..++.+-
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~-~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPS-EFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 999999999999999986322 56799999999999999999999988764
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.84 E-value=3.1e-05 Score=50.38 Aligned_cols=33 Identities=36% Similarity=0.831 Sum_probs=20.5
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC
Q 036072 350 TYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD 382 (631)
Q Consensus 350 ~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 382 (631)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 466666666666666666666666666666655
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.065 Score=56.31 Aligned_cols=389 Identities=12% Similarity=0.128 Sum_probs=221.7
Q ss_pred CCCHHHHHHHHHhhccCc-hhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHH
Q 036072 208 NLSHNLVVDVLERFRHAR-RPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAM 286 (631)
Q Consensus 208 ~~~~~~~~~vl~~~~~~~-~~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li 286 (631)
+.+-+....+++.....+ +.+..+++.+.... .-+...|..-|+.-.+.++++..+.+|.+.... +.+.+.|..-|
T Consensus 17 P~di~sw~~lire~qt~~~~~~R~~YEq~~~~F--P~s~r~W~~yi~~El~skdfe~VEkLF~RCLvk-vLnlDLW~lYl 93 (656)
T KOG1914|consen 17 PYDIDSWSQLIREAQTQPIDKVRETYEQLVNVF--PSSPRAWKLYIERELASKDFESVEKLFSRCLVK-VLNLDLWKLYL 93 (656)
T ss_pred CccHHHHHHHHHHHccCCHHHHHHHHHHHhccC--CCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH-HhhHhHHHHHH
Confidence 344455556666654433 34667777665433 334678889999999999999999999988754 34566666666
Q ss_pred HHHHHc-cC----HHHHHHHHHHHHh-CCCCc-CHHHHHHHHHHH---------HcCCChHHHHHHHHHHhcccCC----
Q 036072 287 NAFAAA-KE----RKKAVAIFELMNK-YKFKA-GVDTINCLLENL---------GRSKLPKEAQLLFDKLKHRFTP---- 346 (631)
Q Consensus 287 ~~~~~~-g~----~~~A~~v~~~m~~-~g~~~-~~~~~~~Ll~~~---------~~~g~~~~A~~l~~~m~~~~~p---- 346 (631)
..-.+. ++ .+...+.|+.... .|+.+ +...|+..+..+ ....+++...+++.++...---
T Consensus 94 ~YVR~~~~~~~~~r~~m~qAy~f~l~kig~di~s~siW~eYi~FL~~vea~gk~ee~QRI~~vRriYqral~tPm~nlEk 173 (656)
T KOG1914|consen 94 SYVRETKGKLFGYREKMVQAYDFALEKIGMDIKSYSIWDEYINFLEGVEAVGKYEENQRITAVRRIYQRALVTPMHNLEK 173 (656)
T ss_pred HHHHHHccCcchHHHHHHHHHHHHHHHhccCcccchhHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHhcCccccHHH
Confidence 555443 22 2334455555443 34333 223344444332 2223445555566655321000
Q ss_pred ---ChhhHHHHHHH-------HHhcCCHHHHHHHHHHHHH--cCCCCCHHH---------------HHHHHHHHHHcC--
Q 036072 347 ---NLTTYTVLLGG-------WCRVKNLMEAGRVWNEMID--KGFKPDVVA---------------HNIMLEGLLKIG-- 397 (631)
Q Consensus 347 ---~~~~y~~Li~~-------~~~~g~~~~A~~l~~~m~~--~g~~p~~~t---------------y~~li~~~~~~g-- 397 (631)
|-..|..=|.. --+...+..|.++++++.. +|+..+..+ |-.+|.-=..++
T Consensus 174 LW~DY~~fE~~IN~~tarK~i~e~s~~Ym~AR~~~qel~~lt~GL~r~~~~vp~~~T~~e~~qv~~W~n~I~wEksNpL~ 253 (656)
T KOG1914|consen 174 LWKDYEAFEQEINIITARKFIGERSPEYMNARRVYQELQNLTRGLNRNAPAVPPKGTKDEIQQVELWKNWIKWEKSNPLR 253 (656)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHHHHHhhhcccCCCCCCCCChHHHHHHHHHHHHHHHHhcCCcc
Confidence 11111111111 1122355666666666653 233221111 222222111100
Q ss_pred -----------------------C----HHHHHHHHHHH----HHcCCCCcH--------HHHHHHHHHHhhcCHHHHHH
Q 036072 398 -----------------------K----RSDAIKLFEVM----KAKGPSPNV--------RSYTIMIWKFCKQNAAVYTC 438 (631)
Q Consensus 398 -----------------------~----~~~A~~ll~~m----~~~g~~p~~--------~~~~~li~~~~~~~~~~~~~ 438 (631)
- +-++...+.+. .+.|-.|+. .+|...|.+..+.+...|..
T Consensus 254 t~~~~~~~~Rv~yayeQ~ll~l~~~peiWy~~s~yl~~~s~l~~~~~d~~~a~~~t~e~~~~yEr~I~~l~~~~~~Ly~~ 333 (656)
T KOG1914|consen 254 TLDGTMLTRRVMYAYEQCLLYLGYHPEIWYDYSMYLIEISDLLTEKGDVPDAKSLTDEAASIYERAIEGLLKENKLLYFA 333 (656)
T ss_pred cccccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhhHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 0 01111111111 011222221 12233333333333334444
Q ss_pred HHHHHhcc---CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-CHHHHHHHHHHHH
Q 036072 439 LITGFGNR---RRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKP-TIHTYNMIMKSYF 514 (631)
Q Consensus 439 li~~~~~~---g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~Li~~~~ 514 (631)
+...--.. ...+.....++++...-..--..+|..+|+...+..-+..|..+|.+..+.+..+ .+..++++|.-||
T Consensus 334 ~a~~eE~~~~~n~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~c 413 (656)
T KOG1914|consen 334 LADYEESRYDDNKEKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYC 413 (656)
T ss_pred HHhhHHHhcccchhhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHh
Confidence 33321111 1355566666666554222233468888888888999999999999999988777 7888889988777
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHH
Q 036072 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP--VLDYNKFAADLSRAGRSYVL 592 (631)
Q Consensus 515 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A 592 (631)
.++.+-|.++|+-=.++ ..-+..--...+.-+...++-..|..+|++.+..++.++ ..+|..++.-=+.-|+...+
T Consensus 414 -skD~~~AfrIFeLGLkk-f~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si 491 (656)
T KOG1914|consen 414 -SKDKETAFRIFELGLKK-FGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSI 491 (656)
T ss_pred -cCChhHHHHHHHHHHHh-cCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHH
Confidence 46778899999976654 122444456677888888999999999999998876665 45799999999999999999
Q ss_pred HHHHHHHHh
Q 036072 593 DELAQKMRF 601 (631)
Q Consensus 593 ~~l~~~m~~ 601 (631)
.++-+++..
T Consensus 492 ~~lekR~~~ 500 (656)
T KOG1914|consen 492 LKLEKRRFT 500 (656)
T ss_pred HHHHHHHHH
Confidence 999888754
|
|
| >COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.0064 Score=63.02 Aligned_cols=239 Identities=13% Similarity=0.032 Sum_probs=137.5
Q ss_pred HHHHhhccCchhHHHHHHHhhc--CCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC---CCHHHHHHHHHHHH
Q 036072 216 DVLERFRHARRPAFRFFCWAGD--KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL---LSMETFKIAMNAFA 290 (631)
Q Consensus 216 ~vl~~~~~~~~~A~~~f~~~~~--~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~---~~~~~~~~li~~~~ 290 (631)
..|.+-+.+++--.+||+.+.. ..+-.|.... ++.=.-..+..++....+.|...+. ++...+...+.+..
T Consensus 210 ~~L~raGydp~gM~~ff~rl~~~~~~~~~~p~yl----~THPlp~~RIa~lr~ra~q~p~~~~~d~~~~~~~~~r~~~~~ 285 (484)
T COG4783 210 TTLVRAGYDPQGMPEFFERLADQLRYGGQPPEYL----LTHPLPEERIADLRNRAEQSPPYNKLDSPDFQLARARIRAKY 285 (484)
T ss_pred HHHHHcCCCchhHHHHHHHHHHHHhcCCCCChHH----hcCCCchhHHHHHHHHHHhCCCCCCCCCccHHHHHHHHHHHh
Confidence 3344456666667788888763 2232222221 1111112344455555555554433 34445555555444
Q ss_pred HccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHH
Q 036072 291 AAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRV 370 (631)
Q Consensus 291 ~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l 370 (631)
....-..+-.++.+..+. .-..--|..- -.+...|..+.|+..++.+....+.|+..+......+.+.++.++|.+.
T Consensus 286 ~~~~~~~~~~~~~~~~~~--~~~aa~YG~A-~~~~~~~~~d~A~~~l~~L~~~~P~N~~~~~~~~~i~~~~nk~~~A~e~ 362 (484)
T COG4783 286 EALPNQQAADLLAKRSKR--GGLAAQYGRA-LQTYLAGQYDEALKLLQPLIAAQPDNPYYLELAGDILLEANKAKEAIER 362 (484)
T ss_pred ccccccchHHHHHHHhCc--cchHHHHHHH-HHHHHhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHH
Confidence 433333333333322221 1112223333 3344677888888888887777777777777778888888888888888
Q ss_pred HHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCH
Q 036072 371 WNEMIDKGFKPD-VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRM 449 (631)
Q Consensus 371 ~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~ 449 (631)
++.+... .|+ ....-.+..+|.+.|+..+|+.+++...... |+ ++..|..|..+|...|+.
T Consensus 363 ~~kal~l--~P~~~~l~~~~a~all~~g~~~eai~~L~~~~~~~--p~--------------dp~~w~~LAqay~~~g~~ 424 (484)
T COG4783 363 LKKALAL--DPNSPLLQLNLAQALLKGGKPQEAIRILNRYLFND--PE--------------DPNGWDLLAQAYAELGNR 424 (484)
T ss_pred HHHHHhc--CCCccHHHHHHHHHHHhcCChHHHHHHHHHHhhcC--CC--------------CchHHHHHHHHHHHhCch
Confidence 8888775 454 4455566677888888888888887776652 32 455566666677777777
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 036072 450 DIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS 497 (631)
Q Consensus 450 ~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 497 (631)
.++..-..++.. ..|++++|...+....+.
T Consensus 425 ~~a~~A~AE~~~------------------~~G~~~~A~~~l~~A~~~ 454 (484)
T COG4783 425 AEALLARAEGYA------------------LAGRLEQAIIFLMRASQQ 454 (484)
T ss_pred HHHHHHHHHHHH------------------hCCCHHHHHHHHHHHHHh
Confidence 666666555432 346666666666665553
|
|
| >PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi | Back alignment and domain information |
|---|
Probab=97.81 E-value=0.00054 Score=71.30 Aligned_cols=125 Identities=14% Similarity=0.151 Sum_probs=81.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc
Q 036072 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGR 326 (631)
Q Consensus 247 ~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~ 326 (631)
.-..+++.+...++++.|..+|+++.+.. +++...+++.+...++..+|++++++..+.. +.+...+....+.+.+
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~---pev~~~LA~v~l~~~~E~~AI~ll~~aL~~~-p~d~~LL~~Qa~fLl~ 246 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERD---PEVAVLLARVYLLMNEEVEAIRLLNEALKEN-PQDSELLNLQAEFLLS 246 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcC---CcHHHHHHHHHHhcCcHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHh
Confidence 34445555556677777777777777665 2344456666666677777777777766543 4455555556666667
Q ss_pred CCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036072 327 SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMI 375 (631)
Q Consensus 327 ~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~ 375 (631)
.++.+.|..+.+++.+-.+.+-.+|..|..+|.+.|+++.|+..++.+.
T Consensus 247 k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~P 295 (395)
T PF09295_consen 247 KKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSCP 295 (395)
T ss_pred cCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCc
Confidence 7777777777777666555555677777777777777777776666654
|
They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other []. |
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.79 E-value=0.014 Score=55.54 Aligned_cols=151 Identities=15% Similarity=0.071 Sum_probs=83.7
Q ss_pred CHHHHHHHHHHHHhC---C-CCcCHH-HHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHH
Q 036072 294 ERKKAVAIFELMNKY---K-FKAGVD-TINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAG 368 (631)
Q Consensus 294 ~~~~A~~v~~~m~~~---g-~~~~~~-~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~ 368 (631)
+.++.++++..++.. | ..++.. .|..++-+....|..+.|..+++.+..+++.+..+-..-...+--.|++++|+
T Consensus 27 nseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~ 106 (289)
T KOG3060|consen 27 NSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAI 106 (289)
T ss_pred CHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHH
Confidence 345555555555432 2 334433 34445556667777888888888877776444444333333344567777777
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCC
Q 036072 369 RVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRR 448 (631)
Q Consensus 369 ~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~ 448 (631)
++|+.+.+.. +.|.++|--=+...-..|+.-+|++-+.+..+. +.. |...|.-+...|...|+
T Consensus 107 e~y~~lL~dd-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~-F~~---------------D~EAW~eLaeiY~~~~~ 169 (289)
T KOG3060|consen 107 EYYESLLEDD-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDK-FMN---------------DQEAWHELAEIYLSEGD 169 (289)
T ss_pred HHHHHHhccC-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHH-hcC---------------cHHHHHHHHHHHHhHhH
Confidence 7777777654 335555554444444555555666555555442 111 44455555555555566
Q ss_pred HHHHHHHHHHHHH
Q 036072 449 MDIVYDLLKEMEE 461 (631)
Q Consensus 449 ~~~A~~l~~~m~~ 461 (631)
+++|.-.++++.-
T Consensus 170 f~kA~fClEE~ll 182 (289)
T KOG3060|consen 170 FEKAAFCLEELLL 182 (289)
T ss_pred HHHHHHHHHHHHH
Confidence 6666666665554
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.76 E-value=0.00039 Score=72.65 Aligned_cols=124 Identities=13% Similarity=0.111 Sum_probs=76.6
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 036072 463 GCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS--GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNS 540 (631)
Q Consensus 463 g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 540 (631)
+.+.+......+++.+....+++.+..++.+.... ....-..|..++|+.|.+.|..+++..+++.=...|+.||..+
T Consensus 61 ~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s 140 (429)
T PF10037_consen 61 KKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFS 140 (429)
T ss_pred CCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhh
Confidence 34445566666666666666666666666666543 2222233445667777777777777776666666677777777
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 036072 541 YTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRA 586 (631)
Q Consensus 541 ~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~ 586 (631)
+|.||+.+.+.|++..|.++..+|+.++...+..|+..-+.+|.+.
T Consensus 141 ~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 141 FNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred HHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 7777777777777777777766666665555555655555555444
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >TIGR00756 PPR pentatricopeptide repeat domain (PPR motif) | Back alignment and domain information |
|---|
Probab=97.75 E-value=5.1e-05 Score=49.29 Aligned_cols=33 Identities=39% Similarity=0.695 Sum_probs=22.8
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC
Q 036072 540 SYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP 572 (631)
Q Consensus 540 t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~ 572 (631)
+|+++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 566677777777777777777777776666665
|
This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR. |
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.75 E-value=4.7e-05 Score=49.26 Aligned_cols=33 Identities=30% Similarity=0.514 Sum_probs=19.1
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC
Q 036072 349 TTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKP 381 (631)
Q Consensus 349 ~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p 381 (631)
.+|+.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 355555555555555555555555555555554
|
|
| >TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD | Back alignment and domain information |
|---|
Probab=97.72 E-value=0.0013 Score=57.98 Aligned_cols=116 Identities=18% Similarity=0.068 Sum_probs=93.4
Q ss_pred HHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 036072 301 IFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFK 380 (631)
Q Consensus 301 v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~ 380 (631)
.++...+.. +.+......+...+...|++++|...|+.+....+.+...|..+...+.+.|++++|..+++...+.+ +
T Consensus 5 ~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-p 82 (135)
T TIGR02552 5 TLKDLLGLD-SEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALD-P 82 (135)
T ss_pred hHHHHHcCC-hhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-C
Confidence 344444443 23445666778888999999999999999887767788999999999999999999999999988764 4
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHH
Q 036072 381 PDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRS 420 (631)
Q Consensus 381 p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~ 420 (631)
.+...+..+...+...|++++|...|+...+. .|+...
T Consensus 83 ~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~~~~ 120 (135)
T TIGR02552 83 DDPRPYFHAAECLLALGEPESALKALDLAIEI--CGENPE 120 (135)
T ss_pred CChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--ccccch
Confidence 46777888888999999999999999998875 454443
|
ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array. |
| >KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton] | Back alignment and domain information |
|---|
Probab=97.69 E-value=0.15 Score=56.83 Aligned_cols=227 Identities=14% Similarity=0.074 Sum_probs=127.5
Q ss_pred hHHHHHHHhhcCCCCCCCHHHHHHHHHHH--HhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHH
Q 036072 227 PAFRFFCWAGDKPGFAHNSRTYNSMMSIL--GRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFEL 304 (631)
Q Consensus 227 ~A~~~f~~~~~~~g~~p~~~~y~~li~~~--~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~ 304 (631)
.|++-...+.++.+- ..|..+++++ .|.|..++|..+++.....+..|..|...+-.+|...++.++|..+|+.
T Consensus 27 kal~~~~kllkk~Pn----~~~a~vLkaLsl~r~gk~~ea~~~Le~~~~~~~~D~~tLq~l~~~y~d~~~~d~~~~~Ye~ 102 (932)
T KOG2053|consen 27 KALAKLGKLLKKHPN----ALYAKVLKALSLFRLGKGDEALKLLEALYGLKGTDDLTLQFLQNVYRDLGKLDEAVHLYER 102 (932)
T ss_pred HHHHHHHHHHHHCCC----cHHHHHHHHHHHHHhcCchhHHHHHhhhccCCCCchHHHHHHHHHHHHHhhhhHHHHHHHH
Confidence 366666655555432 3344444443 4566777777777766665555666777777777777777777777777
Q ss_pred HHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 036072 305 MNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVV 384 (631)
Q Consensus 305 m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 384 (631)
..+. .|+......+..+|++.+++.+-.++--+|-+.++.+...+=++++.+.+... .|+..
T Consensus 103 ~~~~--~P~eell~~lFmayvR~~~yk~qQkaa~~LyK~~pk~~yyfWsV~Slilqs~~----------------~~~~~ 164 (932)
T KOG2053|consen 103 ANQK--YPSEELLYHLFMAYVREKSYKKQQKAALQLYKNFPKRAYYFWSVISLILQSIF----------------SENEL 164 (932)
T ss_pred HHhh--CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccchHHHHHHHHHHhcc----------------CCccc
Confidence 7665 35566666666677776666655554444444444445544444444332211 11111
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHH-HHHHHcC
Q 036072 385 AHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLL-KEMEERG 463 (631)
Q Consensus 385 ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~-~~m~~~g 463 (631)
.. .+. ..-|.+.++.+.+.+-.-. +-. -.-.-...+-..|++++|.+++ ....+.-
T Consensus 165 ~~-~i~--------l~LA~~m~~~~l~~~gk~~--s~a------------E~~Lyl~iL~~~~k~~eal~~l~~~la~~l 221 (932)
T KOG2053|consen 165 LD-PIL--------LALAEKMVQKLLEKKGKIE--SEA------------EIILYLLILELQGKYQEALEFLAITLAEKL 221 (932)
T ss_pred cc-chh--------HHHHHHHHHHHhccCCccc--hHH------------HHHHHHHHHHhcccHHHHHHHHHHHHHHhc
Confidence 11 111 1224445555544430101 000 0001122344567899999988 4455554
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC
Q 036072 464 CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSG 498 (631)
Q Consensus 464 ~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g 498 (631)
...+...-+.-+..+...+++.+..++-.++...|
T Consensus 222 ~~~~~~l~~~~~dllk~l~~w~~l~~l~~~Ll~k~ 256 (932)
T KOG2053|consen 222 TSANLYLENKKLDLLKLLNRWQELFELSSRLLEKG 256 (932)
T ss_pred cccchHHHHHHHHHHHHhcChHHHHHHHHHHHHhC
Confidence 44555666677788888899999999988888875
|
|
| >PF13812 PPR_3: Pentatricopeptide repeat domain | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.00011 Score=47.45 Aligned_cols=32 Identities=25% Similarity=0.473 Sum_probs=15.6
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 036072 540 SYTVLIGGLISQDRSGEAYKYLEEMLEKGMKA 571 (631)
Q Consensus 540 t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p 571 (631)
+|+.+|.+|++.|+++.|.++|++|.+.|+.|
T Consensus 3 ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 3 TYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 44444444444444444444444444444443
|
|
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.61 E-value=0.0026 Score=57.00 Aligned_cols=124 Identities=14% Similarity=0.154 Sum_probs=71.6
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH--HHHHHHH
Q 036072 471 YNALIKLMKIQKMPDEAVRIYKEMVRSGFKPT---IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD--NSYTVLI 545 (631)
Q Consensus 471 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~--~t~~~li 545 (631)
|..++..+ ..++...+...++.+.+.. ..+ ....-.+...+...|++++|...|+.+......++. ...-.|.
T Consensus 15 y~~~~~~~-~~~~~~~~~~~~~~l~~~~-~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA 92 (145)
T PF09976_consen 15 YEQALQAL-QAGDPAKAEAAAEQLAKDY-PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLA 92 (145)
T ss_pred HHHHHHHH-HCCCHHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHH
Confidence 34444444 3666666766677766642 112 222333446666777777777777777765422221 2333455
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036072 546 GGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQK 598 (631)
Q Consensus 546 ~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 598 (631)
..+...|++++|+..++...... .....+.....++.+.|++++|...|++
T Consensus 93 ~~~~~~~~~d~Al~~L~~~~~~~--~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 93 RILLQQGQYDEALATLQQIPDEA--FKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHcCCHHHHHHHHHhccCcc--hHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 66667777777777775533322 2334556677777777777777777664
|
|
| >PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms | Back alignment and domain information |
|---|
Probab=97.60 E-value=0.0018 Score=67.81 Aligned_cols=116 Identities=16% Similarity=0.174 Sum_probs=63.0
Q ss_pred CcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcc---cCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 036072 311 KAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR---FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHN 387 (631)
Q Consensus 311 ~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~---~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~ 387 (631)
+.+...+..+++.+....+.+.+..++-..+.. ...-..|..++|+.|.+.|..++++.+++.=...|+-||..++|
T Consensus 63 ~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n 142 (429)
T PF10037_consen 63 PVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFN 142 (429)
T ss_pred CCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHH
Confidence 334444444555555555555555555555431 11222334466666666666666666666666666666666666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 036072 388 IMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIW 426 (631)
Q Consensus 388 ~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~ 426 (631)
.||+.+.+.|++..|.++..+|...+...+..|+...+.
T Consensus 143 ~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~ 181 (429)
T PF10037_consen 143 LLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALY 181 (429)
T ss_pred HHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHH
Confidence 666666666666666666666555544444444444333
|
The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins []. |
| >PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function | Back alignment and domain information |
|---|
Probab=97.55 E-value=0.0053 Score=54.99 Aligned_cols=126 Identities=13% Similarity=-0.024 Sum_probs=68.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCH--HHHHHH
Q 036072 246 RTYNSMMSILGRARQFETMVSMLEEMGEKGLLSM---ETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGV--DTINCL 320 (631)
Q Consensus 246 ~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~---~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~--~~~~~L 320 (631)
..|..++..+. .++...+...++.+...+.-+. ...-.+...+...|++++|...|+........++. .....|
T Consensus 13 ~~y~~~~~~~~-~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~L 91 (145)
T PF09976_consen 13 ALYEQALQALQ-AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRL 91 (145)
T ss_pred HHHHHHHHHHH-CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHH
Confidence 34555555553 6666666666777766655432 23333445666667777777777766665422211 122334
Q ss_pred HHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 036072 321 LENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNE 373 (631)
Q Consensus 321 l~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~ 373 (631)
...+...|++++|+..++..... ......+......|.+.|++++|...|+.
T Consensus 92 A~~~~~~~~~d~Al~~L~~~~~~-~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~ 143 (145)
T PF09976_consen 92 ARILLQQGQYDEALATLQQIPDE-AFKALAAELLGDIYLAQGDYDEARAAYQK 143 (145)
T ss_pred HHHHHHcCCHHHHHHHHHhccCc-chHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 55566666666666666553321 12333445555666666666666666554
|
|
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.54 E-value=0.0013 Score=54.42 Aligned_cols=77 Identities=19% Similarity=0.416 Sum_probs=49.0
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHhcCC--------hhHHHHHHHHHHHCCCCCCHHHHHHH
Q 036072 439 LITGFGNRRRMDIVYDLLKEMEERGC-PPDGLTYNALIKLMKIQKM--------PDEAVRIYKEMVRSGFKPTIHTYNMI 509 (631)
Q Consensus 439 li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~li~~~~~~g~--------~~~A~~l~~~m~~~g~~p~~~t~~~L 509 (631)
.|..+...+++.....+|..++..|+ .|+..+|+.++.+.++..- .-+.+.+|+.|...+++|+..||+.+
T Consensus 31 ~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYniv 110 (120)
T PF08579_consen 31 NINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYNIV 110 (120)
T ss_pred HHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHHHH
Confidence 34445555777777777777777777 7777777777777655432 23455566666666666666666666
Q ss_pred HHHHHH
Q 036072 510 MKSYFQ 515 (631)
Q Consensus 510 i~~~~~ 515 (631)
+..+.+
T Consensus 111 l~~Llk 116 (120)
T PF08579_consen 111 LGSLLK 116 (120)
T ss_pred HHHHHH
Confidence 655543
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.50 E-value=0.0016 Score=65.45 Aligned_cols=83 Identities=16% Similarity=0.201 Sum_probs=37.3
Q ss_pred CChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHHHHHHcCCHHHHHH
Q 036072 328 KLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD---VVAHNIMLEGLLKIGKRSDAIK 404 (631)
Q Consensus 328 g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~ty~~li~~~~~~g~~~~A~~ 404 (631)
++.+.|.++|+...+.++.+...|...++.+.+.++.+.|..+|+..... +.++ ...|...+..=.+.|+.+.+.+
T Consensus 50 ~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~l~~~~d~~~aR~lfer~i~~-l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~ 128 (280)
T PF05843_consen 50 KDPKRARKIFERGLKKFPSDPDFWLEYLDFLIKLNDINNARALFERAISS-LPKEKQSKKIWKKFIEFESKYGDLESVRK 128 (280)
T ss_dssp S-HHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHCCT-SSCHHHCHHHHHHHHHHHHHHS-HHHHHH
T ss_pred CCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhCcHHHHHHHHHHHHHh-cCchhHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 33344555555544444444444555555555555555555555554433 1111 1245555555555555555555
Q ss_pred HHHHHHH
Q 036072 405 LFEVMKA 411 (631)
Q Consensus 405 ll~~m~~ 411 (631)
+.+.+.+
T Consensus 129 v~~R~~~ 135 (280)
T PF05843_consen 129 VEKRAEE 135 (280)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 5555444
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins | Back alignment and domain information |
|---|
Probab=97.44 E-value=0.0033 Score=63.17 Aligned_cols=131 Identities=15% Similarity=0.097 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHH-ccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 036072 246 RTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAA-AKERKKAVAIFELMNKYKFKAGVDTINCLLENL 324 (631)
Q Consensus 246 ~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~-~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~ 324 (631)
.+|..+|+..-+.+..+.|..+|.+..+.+..+..+|......-.. .++.+.|.++|+...+. +..+...|..-++.+
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~-f~~~~~~~~~Y~~~l 80 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDKRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK-FPSDPDFWLEYLDFL 80 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH-HTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 5799999999999999999999999997766677788777666444 57777799999999986 467888899999999
Q ss_pred HcCCChHHHHHHHHHHhcccCCCh---hhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036072 325 GRSKLPKEAQLLFDKLKHRFTPNL---TTYTVLLGGWCRVKNLMEAGRVWNEMIDK 377 (631)
Q Consensus 325 ~~~g~~~~A~~l~~~m~~~~~p~~---~~y~~Li~~~~~~g~~~~A~~l~~~m~~~ 377 (631)
.+.|+.+.|..+|+.....+.++. ..|...+..=.+.|+++.+.++.+.+.+.
T Consensus 81 ~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 81 IKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 999999999999999987755444 58999999999999999999999999885
|
The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.42 E-value=0.00019 Score=45.20 Aligned_cols=29 Identities=38% Similarity=0.825 Sum_probs=16.3
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcC
Q 036072 350 TYTVLLGGWCRVKNLMEAGRVWNEMIDKG 378 (631)
Q Consensus 350 ~y~~Li~~~~~~g~~~~A~~l~~~m~~~g 378 (631)
+||++|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 45555555555555555555555555544
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.003 Score=50.54 Aligned_cols=89 Identities=15% Similarity=0.086 Sum_probs=39.6
Q ss_pred HHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHH
Q 036072 286 MNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLM 365 (631)
Q Consensus 286 i~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~ 365 (631)
...+...|++++|+..++...+.. +.+...+..+...+...+++++|.+.|+......+.+..++..+...+...|+++
T Consensus 7 a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (100)
T cd00189 7 GNLYYKLGDYDEALEYYEKALELD-PDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLGKYE 85 (100)
T ss_pred HHHHHHHhcHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHHhHH
Confidence 333444444444444444444332 1222334444444444444555555444443333333344444555555555555
Q ss_pred HHHHHHHHHH
Q 036072 366 EAGRVWNEMI 375 (631)
Q Consensus 366 ~A~~l~~~m~ 375 (631)
+|...+....
T Consensus 86 ~a~~~~~~~~ 95 (100)
T cd00189 86 EALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHH
Confidence 5555554443
|
|
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.06 Score=54.80 Aligned_cols=111 Identities=14% Similarity=0.164 Sum_probs=84.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 036072 470 TYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLI 549 (631)
Q Consensus 470 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~ 549 (631)
+.+.-|.-+...|+...|.++-.+. + .|+...|-..+.+|+..++|++-.++... + -++.-|..++.+|.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s--k----KsPIGyepFv~~~~ 248 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS--K----KSPIGYEPFVEACL 248 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC--C----CCCCChHHHHHHHH
Confidence 4555566677788888888776554 2 57888899999999999999987776432 1 25678999999999
Q ss_pred HcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036072 550 SQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600 (631)
Q Consensus 550 ~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 600 (631)
+.|+..+|..++.++ .+..-+..|.++|++.+|.+..-+.+
T Consensus 249 ~~~~~~eA~~yI~k~----------~~~~rv~~y~~~~~~~~A~~~A~~~k 289 (319)
T PF04840_consen 249 KYGNKKEASKYIPKI----------PDEERVEMYLKCGDYKEAAQEAFKEK 289 (319)
T ss_pred HCCCHHHHHHHHHhC----------ChHHHHHHHHHCCCHHHHHHHHHHcC
Confidence 999999999888772 22456777888888888877765544
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends | Back alignment and domain information |
|---|
Probab=97.38 E-value=0.0025 Score=52.82 Aligned_cols=41 Identities=22% Similarity=0.351 Sum_probs=21.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCC-CCCHHHHHHHHHHHHH
Q 036072 475 IKLMKIQKMPDEAVRIYKEMVRSGF-KPTIHTYNMIMKSYFQ 515 (631)
Q Consensus 475 i~~~~~~g~~~~A~~l~~~m~~~g~-~p~~~t~~~Li~~~~~ 515 (631)
|..+...+++...-.+|+.+++.|+ .|+..+|+.++.+.++
T Consensus 32 I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~ 73 (120)
T PF08579_consen 32 INSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAK 73 (120)
T ss_pred HHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHH
Confidence 3344444555555555555555555 5555555555555443
|
Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ]. |
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.37 E-value=0.0051 Score=52.53 Aligned_cols=95 Identities=13% Similarity=0.035 Sum_probs=40.3
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCC--CcCHHHHHHHHHH
Q 036072 249 NSMMSILGRARQFETMVSMLEEMGEKGLL---SMETFKIAMNAFAAAKERKKAVAIFELMNKYKF--KAGVDTINCLLEN 323 (631)
Q Consensus 249 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~---~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~--~~~~~~~~~Ll~~ 323 (631)
-.....+.+.|++++|...|+.+....+. ....+..+..++...|+++.|.+.|+.+..... ......+..+..+
T Consensus 6 ~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~~ 85 (119)
T TIGR02795 6 YDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGMS 85 (119)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHHH
Confidence 33444444455555555555555443321 123334444444444444445444444443210 0112233333444
Q ss_pred HHcCCChHHHHHHHHHHhcc
Q 036072 324 LGRSKLPKEAQLLFDKLKHR 343 (631)
Q Consensus 324 ~~~~g~~~~A~~l~~~m~~~ 343 (631)
+.+.|+.++|...++++.+.
T Consensus 86 ~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 86 LQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHhCChHHHHHHHHHHHHH
Confidence 44444444444444444433
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat | Back alignment and domain information |
|---|
Probab=97.35 E-value=0.0002 Score=45.09 Aligned_cols=29 Identities=34% Similarity=0.566 Sum_probs=13.3
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 036072 540 SYTVLIGGLISQDRSGEAYKYLEEMLEKG 568 (631)
Q Consensus 540 t~~~li~~~~~~g~~~~A~~ll~~m~~~g 568 (631)
+|+.+|++|++.|++++|.++|++|.+.|
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g 30 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERG 30 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCc
Confidence 34444444444444444444444444443
|
Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein. |
| >cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C | Back alignment and domain information |
|---|
Probab=97.34 E-value=0.0033 Score=50.31 Aligned_cols=90 Identities=17% Similarity=0.117 Sum_probs=42.8
Q ss_pred HHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 036072 320 LLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399 (631)
Q Consensus 320 Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~ 399 (631)
+...+...|++++|..+++...+..+.+...+..+...+...+++++|.+.|+...... ..+..++..+...+...|+.
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 84 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELD-PDNAKAYYNLGLAYYKLGKY 84 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC-CcchhHHHHHHHHHHHHHhH
Confidence 34444445555555555555443333333444445555555555555555555544432 11223444444555555555
Q ss_pred HHHHHHHHHHH
Q 036072 400 SDAIKLFEVMK 410 (631)
Q Consensus 400 ~~A~~ll~~m~ 410 (631)
++|...+....
T Consensus 85 ~~a~~~~~~~~ 95 (100)
T cd00189 85 EEALEAYEKAL 95 (100)
T ss_pred HHHHHHHHHHH
Confidence 55555554443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=97.33 E-value=0.043 Score=55.27 Aligned_cols=123 Identities=12% Similarity=0.112 Sum_probs=62.9
Q ss_pred HHHhc-CChhHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-----CCHH-HHHH
Q 036072 477 LMKIQ-KMPDEAVRIYKEMVR----SGFKPT--IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC-----PDDN-SYTV 543 (631)
Q Consensus 477 ~~~~~-g~~~~A~~l~~~m~~----~g~~p~--~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~-----p~~~-t~~~ 543 (631)
.|... |++++|++.|++..+ .+ .+. ..++..+...+.+.|++++|.++|+++...-.. .+.. .|-.
T Consensus 123 ~ye~~~~d~e~Ai~~Y~~A~~~y~~e~-~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~ 201 (282)
T PF14938_consen 123 IYEEQLGDYEKAIEYYQKAAELYEQEG-SPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLK 201 (282)
T ss_dssp HHCCTT--HHHHHHHHHHHHHHHHHTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHHHHCC-ChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHH
Confidence 34444 667777777766553 12 111 234556667777788888888888877654221 1221 1222
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC--CCCCC--HHHHHHHHHHHHhc--CCHHHHHHHHHHHH
Q 036072 544 LIGGLISQDRSGEAYKYLEEMLEK--GMKAP--VLDYNKFAADLSRA--GRSYVLDELAQKMR 600 (631)
Q Consensus 544 li~~~~~~g~~~~A~~ll~~m~~~--g~~p~--~~~~~~li~~~~~~--g~~~~A~~l~~~m~ 600 (631)
.+-++...|+...|.+.+++.... ++..+ ......|+.++-.. ..++.+..-++.+.
T Consensus 202 a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 202 AILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 233455567888888888877654 33333 22344555555432 22444444444443
|
|
| >KOG3060 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=97.30 E-value=0.084 Score=50.38 Aligned_cols=169 Identities=12% Similarity=0.043 Sum_probs=129.0
Q ss_pred CCCCHH-HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHH
Q 036072 241 FAHNSR-TYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINC 319 (631)
Q Consensus 241 ~~p~~~-~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~ 319 (631)
..++.. .|..++=+....|+.+.|...++.+..+-+-+..+-..-...+-..|.+++|+++++.+++.. +.|..++-.
T Consensus 47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~KR 125 (289)
T KOG3060|consen 47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAMLLEATGNYKEAIEYYESLLEDD-PTDTVIRKR 125 (289)
T ss_pred cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHHHHHHhhchhhHHHHHHHHhccC-cchhHHHHH
Confidence 445544 466666777788999999999999988765555555444555667899999999999999886 666777766
Q ss_pred HHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHHHHHHH---
Q 036072 320 LLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVA-HNIMLEGLLK--- 395 (631)
Q Consensus 320 Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t-y~~li~~~~~--- 395 (631)
=+-..-..|..-+|++-+....+.+..|...|.-+...|...|++++|.-.++++.-. .|.... +..+...+.-
T Consensus 126 KlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~--~P~n~l~f~rlae~~Yt~gg 203 (289)
T KOG3060|consen 126 KLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLI--QPFNPLYFQRLAEVLYTQGG 203 (289)
T ss_pred HHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHHHHhh
Confidence 5656666788889999999998889999999999999999999999999999999874 454433 3344444333
Q ss_pred cCCHHHHHHHHHHHHHc
Q 036072 396 IGKRSDAIKLFEVMKAK 412 (631)
Q Consensus 396 ~g~~~~A~~ll~~m~~~ 412 (631)
..+...|.++|....+.
T Consensus 204 ~eN~~~arkyy~~alkl 220 (289)
T KOG3060|consen 204 AENLELARKYYERALKL 220 (289)
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 33567788888888764
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.14 Score=50.09 Aligned_cols=55 Identities=15% Similarity=0.065 Sum_probs=30.8
Q ss_pred HHHcCCChHHHHHHHHHHhcccCCChhhH---HHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036072 323 NLGRSKLPKEAQLLFDKLKHRFTPNLTTY---TVLLGGWCRVKNLMEAGRVWNEMIDK 377 (631)
Q Consensus 323 ~~~~~g~~~~A~~l~~~m~~~~~p~~~~y---~~Li~~~~~~g~~~~A~~l~~~m~~~ 377 (631)
.+...|++++|.+.|+.+....+-+.... -.+..++.+.+++++|...+++..+.
T Consensus 41 ~~~~~g~y~~Ai~~f~~l~~~yP~s~~a~~a~l~la~ayy~~~~y~~A~~~~e~fi~~ 98 (243)
T PRK10866 41 QKLQDGNWKQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL 98 (243)
T ss_pred HHHHCCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 34455666666666666655443333332 33445556666666666666666654
|
|
| >KOG1127 consensus TPR repeat-containing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.29 E-value=0.24 Score=55.84 Aligned_cols=149 Identities=11% Similarity=0.046 Sum_probs=103.2
Q ss_pred hhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHH
Q 036072 261 FETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKL 340 (631)
Q Consensus 261 ~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m 340 (631)
...|...|-+.....+.-...|..|...|+...+...|.+.|+...+.. ..+......+.+.|++..+++.|..+.-..
T Consensus 474 ~~~al~ali~alrld~~~apaf~~LG~iYrd~~Dm~RA~kCf~KAFeLD-atdaeaaaa~adtyae~~~we~a~~I~l~~ 552 (1238)
T KOG1127|consen 474 SALALHALIRALRLDVSLAPAFAFLGQIYRDSDDMKRAKKCFDKAFELD-ATDAEAAAASADTYAEESTWEEAFEICLRA 552 (1238)
T ss_pred HHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-chhhhhHHHHHHHhhccccHHHHHHHHHHH
Confidence 3334444433333333333478888888888888888888888888765 556777888888999999999998884443
Q ss_pred hcccCCChhh--HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 341 KHRFTPNLTT--YTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKA 411 (631)
Q Consensus 341 ~~~~~p~~~~--y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~ 411 (631)
.+..+.-... |--..-.|.+.++..+|..-|+...... +.|...|..+..+|.+.|++..|+++|.+...
T Consensus 553 ~qka~a~~~k~nW~~rG~yyLea~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~ 624 (1238)
T KOG1127|consen 553 AQKAPAFACKENWVQRGPYYLEAHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASL 624 (1238)
T ss_pred hhhchHHHHHhhhhhccccccCccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHh
Confidence 3322212222 2334445667788888888888777653 23677888999999999999999999987765
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.0051 Score=57.37 Aligned_cols=36 Identities=28% Similarity=0.440 Sum_probs=28.6
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC
Q 036072 448 RMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKM 483 (631)
Q Consensus 448 ~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~ 483 (631)
+-+-|++++++|...|+.||..|+..|++.+.+.+.
T Consensus 118 Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 118 QQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 556788888888888888888888888888855543
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms] | Back alignment and domain information |
|---|
Probab=97.24 E-value=0.26 Score=49.03 Aligned_cols=206 Identities=11% Similarity=0.044 Sum_probs=128.4
Q ss_pred HHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 036072 321 LENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRS 400 (631)
Q Consensus 321 l~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~ 400 (631)
+..+.-.|+...|+.....+.+-.+-|...|..-..+|...|+...|+.=++...+..- -+..++--+-..+...|+.+
T Consensus 162 l~s~~~~GD~~~ai~~i~~llEi~~Wda~l~~~Rakc~i~~~e~k~AI~Dlk~askLs~-DnTe~~ykis~L~Y~vgd~~ 240 (504)
T KOG0624|consen 162 LKSASGSGDCQNAIEMITHLLEIQPWDASLRQARAKCYIAEGEPKKAIHDLKQASKLSQ-DNTEGHYKISQLLYTVGDAE 240 (504)
T ss_pred HHHHhcCCchhhHHHHHHHHHhcCcchhHHHHHHHHHHHhcCcHHHHHHHHHHHHhccc-cchHHHHHHHHHHHhhhhHH
Confidence 33444566777777777777666666666777777777777777777665555444321 23444445555666667777
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHH---HHHHH
Q 036072 401 DAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYN---ALIKL 477 (631)
Q Consensus 401 ~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~---~li~~ 477 (631)
.++...++-.+ +.||....-.....+-+.. ... .-+......++|.++++-.+...+.......+.|+ .+-.+
T Consensus 241 ~sL~~iRECLK--ldpdHK~Cf~~YKklkKv~-K~l-es~e~~ie~~~~t~cle~ge~vlk~ep~~~~ir~~~~r~~c~C 316 (504)
T KOG0624|consen 241 NSLKEIRECLK--LDPDHKLCFPFYKKLKKVV-KSL-ESAEQAIEEKHWTECLEAGEKVLKNEPEETMIRYNGFRVLCTC 316 (504)
T ss_pred HHHHHHHHHHc--cCcchhhHHHHHHHHHHHH-HHH-HHHHHHHhhhhHHHHHHHHHHHHhcCCcccceeeeeeheeeec
Confidence 77766666655 3454332211111111100 000 00223345577888888887777664443344444 44556
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 036072 478 MKIQKMPDEAVRIYKEMVRSGFKPT-IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG 533 (631)
Q Consensus 478 ~~~~g~~~~A~~l~~~m~~~g~~p~-~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g 533 (631)
+...+++.+|++...+..+. .|+ +.++.-=..+|.-..+++.|+.-|+...+.+
T Consensus 317 ~~~d~~~~eAiqqC~evL~~--d~~dv~~l~dRAeA~l~dE~YD~AI~dye~A~e~n 371 (504)
T KOG0624|consen 317 YREDEQFGEAIQQCKEVLDI--DPDDVQVLCDRAEAYLGDEMYDDAIHDYEKALELN 371 (504)
T ss_pred ccccCCHHHHHHHHHHHHhc--CchHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcC
Confidence 67788999999999998875 454 8888888899999999999999999998764
|
|
| >TIGR02795 tol_pal_ybgF tol-pal system protein YbgF | Back alignment and domain information |
|---|
Probab=97.13 E-value=0.013 Score=49.98 Aligned_cols=96 Identities=10% Similarity=0.025 Sum_probs=51.4
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHhcccCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC--CCHHHHHHHHH
Q 036072 317 INCLLENLGRSKLPKEAQLLFDKLKHRFTPN---LTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFK--PDVVAHNIMLE 391 (631)
Q Consensus 317 ~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~---~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~--p~~~ty~~li~ 391 (631)
+..+...+.+.|++++|...|+.+....+.+ ...+..+...+.+.|++++|...|+.+...... .....+..+..
T Consensus 5 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~~ 84 (119)
T TIGR02795 5 YYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLGM 84 (119)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHHH
Confidence 3444455555566666666665554432221 234455566666666666666666666543111 11334555555
Q ss_pred HHHHcCCHHHHHHHHHHHHHc
Q 036072 392 GLLKIGKRSDAIKLFEVMKAK 412 (631)
Q Consensus 392 ~~~~~g~~~~A~~ll~~m~~~ 412 (631)
++.+.|+.++|.+.++++.+.
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~ 105 (119)
T TIGR02795 85 SLQELGDKEKAKATLQQVIKR 105 (119)
T ss_pred HHHHhCChHHHHHHHHHHHHH
Confidence 666666666666666666554
|
Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction. |
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.45 Score=49.15 Aligned_cols=132 Identities=14% Similarity=0.207 Sum_probs=103.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH-HHHHH
Q 036072 468 GLTYNALIKLMKIQKMPDEAVRIYKEMVRSG-FKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNS-YTVLI 545 (631)
Q Consensus 468 ~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t-~~~li 545 (631)
...|...|.+..+..-++.|..+|-++.+.+ +.+++..++++|..++ .|+...|..+|+--..+ .||... -+-.+
T Consensus 397 t~v~C~~~N~v~r~~Gl~aaR~~F~k~rk~~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~--f~d~~~y~~kyl 473 (660)
T COG5107 397 TFVFCVHLNYVLRKRGLEAARKLFIKLRKEGIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLK--FPDSTLYKEKYL 473 (660)
T ss_pred hhHHHHHHHHHHHHhhHHHHHHHHHHHhccCCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHh--CCCchHHHHHHH
Confidence 4567888888888889999999999999988 6788889999998776 56778889999865554 234443 35567
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 036072 546 GGLISQDRSGEAYKYLEEMLEKGMKAP--VLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603 (631)
Q Consensus 546 ~~~~~~g~~~~A~~ll~~m~~~g~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 603 (631)
.-+..-++-+.|..+|+..+.+ +..+ ..+|..+|..-..-|+...|..+-++|.+.-
T Consensus 474 ~fLi~inde~naraLFetsv~r-~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf~e~~ 532 (660)
T COG5107 474 LFLIRINDEENARALFETSVER-LEKTQLKRIYDKMIEYESMVGSLNNVYSLEERFRELV 532 (660)
T ss_pred HHHHHhCcHHHHHHHHHHhHHH-HHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHHHHHc
Confidence 7778889999999999966554 2222 4479999999999999999988888887644
|
|
| >PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses | Back alignment and domain information |
|---|
Probab=97.10 E-value=0.0075 Score=56.29 Aligned_cols=87 Identities=15% Similarity=0.254 Sum_probs=52.8
Q ss_pred CHHHHHHHHHHHHhc-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc----------------CCHHHHHHH
Q 036072 467 DGLTYNALIKLMKIQ-----KMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT----------------GNYEMGRKV 525 (631)
Q Consensus 467 ~~~t~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~----------------g~~~~A~~~ 525 (631)
+..+|..++..|.+. |.++-....+..|.+.|+.-|..+|+.|++.+=+. .+-+-|+++
T Consensus 46 ~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~F~hyp~Qq~c~i~l 125 (228)
T PF06239_consen 46 DKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAEFMHYPRQQECAIDL 125 (228)
T ss_pred cHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHHhccCcHHHHHHHHH
Confidence 555666666655433 45555556666666666666666666666654321 123456677
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 036072 526 WDEMIRRGCCPDDNSYTVLIGGLISQDR 553 (631)
Q Consensus 526 ~~~m~~~g~~p~~~t~~~li~~~~~~g~ 553 (631)
+++|...|+-||..++..+++.+.+.+.
T Consensus 126 L~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 126 LEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 7777777777777777777777655443
|
ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 []. |
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=96.97 E-value=0.0016 Score=52.28 Aligned_cols=79 Identities=20% Similarity=0.315 Sum_probs=31.2
Q ss_pred CChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 036072 482 KMPDEAVRIYKEMVRSGFK-PTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKY 560 (631)
Q Consensus 482 g~~~~A~~l~~~m~~~g~~-p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l 560 (631)
|+++.|+.+++++.+..-. ++...+..+..+|.+.|++++|..+++. .+.+.. +....-.+..+|.+.|++++|+++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~-~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPS-NPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHC-HHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCC-CHHHHHHHHHHHHHhCCHHHHHHH
Confidence 4445555555555443211 1222333344455555555555555544 111110 122222334444445555555544
Q ss_pred HH
Q 036072 561 LE 562 (631)
Q Consensus 561 l~ 562 (631)
++
T Consensus 81 l~ 82 (84)
T PF12895_consen 81 LE 82 (84)
T ss_dssp HH
T ss_pred Hh
Confidence 44
|
|
| >PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A | Back alignment and domain information |
|---|
Probab=96.96 E-value=0.0019 Score=51.75 Aligned_cols=81 Identities=20% Similarity=0.170 Sum_probs=40.5
Q ss_pred cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 036072 516 TGNYEMGRKVWDEMIRRGCC-PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDE 594 (631)
Q Consensus 516 ~g~~~~A~~~~~~m~~~g~~-p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 594 (631)
.|+++.|+.+++++.+.... ++...+-.+..+|.+.|++++|..++++ .+.+. .+....-.+..+|.+.|++++|++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~-~~~~~~~l~a~~~~~l~~y~eAi~ 79 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDP-SNPDIHYLLARCLLKLGKYEEAIK 79 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHH-CHHHHHHHHHHHHHHTT-HHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCC-CCHHHHHHHHHHHHHhCCHHHHHH
Confidence 35566666666666654321 1333344456666666666666666655 21111 112233344566666666666666
Q ss_pred HHHH
Q 036072 595 LAQK 598 (631)
Q Consensus 595 l~~~ 598 (631)
.+++
T Consensus 80 ~l~~ 83 (84)
T PF12895_consen 80 ALEK 83 (84)
T ss_dssp HHHH
T ss_pred HHhc
Confidence 6554
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.054 Score=50.01 Aligned_cols=83 Identities=7% Similarity=-0.076 Sum_probs=44.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcC--HHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHH
Q 036072 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAG--VDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGW 358 (631)
Q Consensus 281 ~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~--~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~ 358 (631)
.+..+...+...|++++|...|+...+....+. ...+..+...+.+.|++++|...+++..+..+.+...+..+...+
T Consensus 37 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 116 (172)
T PRK02603 37 VYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAVIY 116 (172)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 445555555555666666666665554321111 244555555666666666666666665544333445555555555
Q ss_pred HhcCC
Q 036072 359 CRVKN 363 (631)
Q Consensus 359 ~~~g~ 363 (631)
...|+
T Consensus 117 ~~~g~ 121 (172)
T PRK02603 117 HKRGE 121 (172)
T ss_pred HHcCC
Confidence 55554
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.94 E-value=0.84 Score=49.62 Aligned_cols=228 Identities=14% Similarity=0.139 Sum_probs=121.2
Q ss_pred cCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHH
Q 036072 344 FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTI 423 (631)
Q Consensus 344 ~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~ 423 (631)
++.+....-.+..++...|.-++|.+.|-+... | ...+..|...+++.+|.++-+... .|.+.+.
T Consensus 848 Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQW~~avelaq~~~----l~qv~tl-- 912 (1189)
T KOG2041|consen 848 LPEDSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQWGEAVELAQRFQ----LPQVQTL-- 912 (1189)
T ss_pred cCcccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHHHHHHHHHHHhcc----chhHHHH--
Confidence 444666777788888888888888877654332 1 235667788888888888766542 2333332
Q ss_pred HHHHHhhc---CHHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036072 424 MIWKFCKQ---NAAVYTCLITGFGNRRRMDIVYDLLKEMEER----GCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVR 496 (631)
Q Consensus 424 li~~~~~~---~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 496 (631)
|.-+... +..+. --|..+.+.|++-+|-+++.+|.+. +.++-..--..++.++. ..+..++.+-.+....
T Consensus 913 -iak~aaqll~~~~~~-eaIe~~Rka~~~~daarll~qmae~e~~K~~p~lr~KklYVL~AlL-vE~h~~~ik~~~~~~~ 989 (1189)
T KOG2041|consen 913 -IAKQAAQLLADANHM-EAIEKDRKAGRHLDAARLLSQMAEREQEKYVPYLRLKKLYVLGALL-VENHRQTIKELRKIDK 989 (1189)
T ss_pred -HHHHHHHHHhhcchH-HHHHHhhhcccchhHHHHHHHHhHHHhhccCCHHHHHHHHHHHHHH-HHHHHHHHHHhhhhhh
Confidence 2111110 11111 1356677778888888888888643 44432222122222221 1222333333444444
Q ss_pred CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH--HHHHHHcCCHHHHHHHHHHHHH-CCCCCCH
Q 036072 497 SGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL--IGGLISQDRSGEAYKYLEEMLE-KGMKAPV 573 (631)
Q Consensus 497 ~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l--i~~~~~~g~~~~A~~ll~~m~~-~g~~p~~ 573 (631)
+|..-+... +...|-..++-++.+..-. -...|.-+ ..--...|.++.|++.--.+.+ ..+-|..
T Consensus 990 ~g~~~dat~-------lles~~l~~~~ri~~n~Wr-----gAEAyHFmilAQrql~eg~v~~Al~Tal~L~DYEd~lpP~ 1057 (1189)
T KOG2041|consen 990 HGFLEDATD-------LLESGLLAEQSRILENTWR-----GAEAYHFMILAQRQLFEGRVKDALQTALILSDYEDFLPPA 1057 (1189)
T ss_pred cCcchhhhh-------hhhhhhhhhHHHHHHhhhh-----hHHHHHHHHHHHHHHHhchHHHHHHHHhhhccHhhcCCHH
Confidence 443322111 1222333333333332221 23344444 4444567888888876655554 2567888
Q ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036072 574 LDYNKFAADLSRAGRSYVLDELAQKMRF 601 (631)
Q Consensus 574 ~~~~~li~~~~~~g~~~~A~~l~~~m~~ 601 (631)
..|+.+.-+-+....+.-.-+.|-+++.
T Consensus 1058 eiySllALaaca~raFGtCSKAfmkLe~ 1085 (1189)
T KOG2041|consen 1058 EIYSLLALAACAVRAFGTCSKAFMKLEA 1085 (1189)
T ss_pred HHHHHHHHHHhhhhhhhhhHHHHHHHHh
Confidence 8888887777776666655555555543
|
|
| >PRK10866 outer membrane biogenesis protein BamD; Provisional | Back alignment and domain information |
|---|
Probab=96.90 E-value=0.25 Score=48.41 Aligned_cols=58 Identities=10% Similarity=0.027 Sum_probs=43.1
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC--CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036072 543 VLIGGLISQDRSGEAYKYLEEMLEK--GMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600 (631)
Q Consensus 543 ~li~~~~~~g~~~~A~~ll~~m~~~--g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 600 (631)
.+..-|.+.|.+..|..-++.+++. +.+........++.+|.+.|..++|.++...+.
T Consensus 180 ~ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 180 SVAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 3455678888888888888888875 333344556778888888999988888777664
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.7 Score=47.93 Aligned_cols=360 Identities=15% Similarity=0.092 Sum_probs=184.2
Q ss_pred hHHHHHHHhhcCCCCCC---C-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHH--HHHHccCHHHHHH
Q 036072 227 PAFRFFCWAGDKPGFAH---N-SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMN--AFAAAKERKKAVA 300 (631)
Q Consensus 227 ~A~~~f~~~~~~~g~~p---~-~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~--~~~~~g~~~~A~~ 300 (631)
.|.++|..+.....-.| . ...-+.++++|.. ++.+.+...+.+..+...-+ .|-.+.. .+-+.+.+.+|++
T Consensus 24 esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~s--~~l~LF~~L~~Y~~k~~~kal~ 100 (549)
T PF07079_consen 24 ESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGKS--AYLPLFKALVAYKQKEYRKALQ 100 (549)
T ss_pred HHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCc--hHHHHHHHHHHHHhhhHHHHHH
Confidence 36666666543322222 1 2334566666654 34555555555555543322 2333332 2346677888888
Q ss_pred HHHHHHhC--CCCc------------CHHHHHHHHHHHHcCCChHHHHHHHHHHhcc-----cCCChhhHHHHHHHHHhc
Q 036072 301 IFELMNKY--KFKA------------GVDTINCLLENLGRSKLPKEAQLLFDKLKHR-----FTPNLTTYTVLLGGWCRV 361 (631)
Q Consensus 301 v~~~m~~~--g~~~------------~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~-----~~p~~~~y~~Li~~~~~~ 361 (631)
.+...... +..+ |...=+..++.+...|.+.++..+++++.++ ..-+..+|+-++-.+.+.
T Consensus 101 ~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vlmlsrS 180 (549)
T PF07079_consen 101 ALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVLMLSRS 180 (549)
T ss_pred HHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHHHHhHH
Confidence 77776654 2211 1112234566777888888888888887654 235777777776666543
Q ss_pred CCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHc-CCHHH--------HHHHHHHH--------------------
Q 036072 362 KNLMEAGRVWNEMIDK---GFKPDVVAHNIMLEGLLKI-GKRSD--------AIKLFEVM-------------------- 409 (631)
Q Consensus 362 g~~~~A~~l~~~m~~~---g~~p~~~ty~~li~~~~~~-g~~~~--------A~~ll~~m-------------------- 409 (631)
.|-++++. .+-|| |.-+|-.|.+. ..++. +.+++..+
T Consensus 181 --------YfLEl~e~~s~dl~pd---yYemilfY~kki~~~d~~~Y~k~~peeeL~s~imqhlfi~p~e~l~~~mq~l~ 249 (549)
T PF07079_consen 181 --------YFLELKESMSSDLYPD---YYEMILFYLKKIHAFDQRPYEKFIPEEELFSTIMQHLFIVPKERLPPLMQILE 249 (549)
T ss_pred --------HHHHHHHhcccccChH---HHHHHHHHHHHHHHHhhchHHhhCcHHHHHHHHHHHHHhCCHhhccHHHHHHH
Confidence 44444332 23333 33344444432 11111 12222211
Q ss_pred --HHcCCCCcHH-HHHHHHHHHh----------------------hcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC
Q 036072 410 --KAKGPSPNVR-SYTIMIWKFC----------------------KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464 (631)
Q Consensus 410 --~~~g~~p~~~-~~~~li~~~~----------------------~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 464 (631)
...-+.|+-. ....++..+. +.-..++..++....+.++...|...+.-+.--..
T Consensus 250 ~We~~yv~p~~~LVi~~L~~~f~~~~e~~~~~ce~ia~~~i~~Lke~li~~F~~~Ls~~Vk~~~T~~a~q~l~lL~~ldp 329 (549)
T PF07079_consen 250 NWENFYVHPNYDLVIEPLKQQFMSDPEQVGHFCEAIASSKIEKLKEELIDRFGNLLSFKVKQVQTEEAKQYLALLKILDP 329 (549)
T ss_pred HHHhhccCCchhHHHHHHHHHHhcChHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHhcCC
Confidence 1112222211 1111111111 11334566667777777777777766665543211
Q ss_pred CC-------------------CHHHHHHH---HHH------------------------HHhcC-ChhHHHHHHHHHHHC
Q 036072 465 PP-------------------DGLTYNAL---IKL------------------------MKIQK-MPDEAVRIYKEMVRS 497 (631)
Q Consensus 465 ~p-------------------~~~t~~~l---i~~------------------------~~~~g-~~~~A~~l~~~m~~~ 497 (631)
.. |...|+.+ +.. +-+.| .-++|+++++.+.+-
T Consensus 330 ~~svs~Kllls~~~lq~Iv~~DD~~~Tklr~yL~lwe~~qs~DiDrqQLvh~L~~~Ak~lW~~g~~dekalnLLk~il~f 409 (549)
T PF07079_consen 330 RISVSEKLLLSPKVLQDIVCEDDESYTKLRDYLNLWEEIQSYDIDRQQLVHYLVFGAKHLWEIGQCDEKALNLLKLILQF 409 (549)
T ss_pred cchhhhhhhcCHHHHHHHHhcchHHHHHHHHHHHHHHHHHhhcccHHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHh
Confidence 00 11111100 000 11122 245666666666542
Q ss_pred CCCCCHHHHHH----HHHHHHH---cCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHH--HHHcCCHHHHHHHHHHH
Q 036072 498 GFKPTIHTYNM----IMKSYFQ---TGNYEMGRKVWDEMIRRGCCPDD----NSYTVLIGG--LISQDRSGEAYKYLEEM 564 (631)
Q Consensus 498 g~~p~~~t~~~----Li~~~~~---~g~~~~A~~~~~~m~~~g~~p~~----~t~~~li~~--~~~~g~~~~A~~ll~~m 564 (631)
. .-|...-|. +=.+|.. ...+..-.++-+-+.+.|+.|-. ..-|.|.+| +..+|++.++.-+-..+
T Consensus 410 t-~yD~ec~n~v~~fvKq~Y~qaLs~~~~~rLlkLe~fi~e~gl~~i~i~e~eian~LaDAEyLysqgey~kc~~ys~WL 488 (549)
T PF07079_consen 410 T-NYDIECENIVFLFVKQAYKQALSMHAIPRLLKLEDFITEVGLTPITISEEEIANFLADAEYLYSQGEYHKCYLYSSWL 488 (549)
T ss_pred c-cccHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhcCCCcccccHHHHHHHHHHHHHHHhcccHHHHHHHHHHH
Confidence 1 112222222 2223332 12334444444445556776543 334444443 44689999988776666
Q ss_pred HHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 036072 565 LEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603 (631)
Q Consensus 565 ~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 603 (631)
.+ +.|++.+|..+..++....++++|..++.+++...
T Consensus 489 ~~--iaPS~~~~RLlGl~l~e~k~Y~eA~~~l~~LP~n~ 525 (549)
T PF07079_consen 489 TK--IAPSPQAYRLLGLCLMENKRYQEAWEYLQKLPPNE 525 (549)
T ss_pred HH--hCCcHHHHHHHHHHHHHHhhHHHHHHHHHhCCCch
Confidence 55 68999999999999999999999999999998633
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=96.89 E-value=0.022 Score=59.31 Aligned_cols=86 Identities=8% Similarity=-0.100 Sum_probs=40.8
Q ss_pred HHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHH
Q 036072 290 AAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGR 369 (631)
Q Consensus 290 ~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~ 369 (631)
...|++++|++.|+.+++.. +-+...|..+..+|...|++++|...++.+....+.+...|..+..+|...|++++|..
T Consensus 13 ~~~~~~~~Ai~~~~~Al~~~-P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg~~~eA~~ 91 (356)
T PLN03088 13 FVDDDFALAVDLYTQAIDLD-PNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLEEYQTAKA 91 (356)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCCHHHHHH
Confidence 33444444444444444433 23344444444444445555555555544444333344445555555555555555555
Q ss_pred HHHHHHH
Q 036072 370 VWNEMID 376 (631)
Q Consensus 370 l~~~m~~ 376 (631)
.|++..+
T Consensus 92 ~~~~al~ 98 (356)
T PLN03088 92 ALEKGAS 98 (356)
T ss_pred HHHHHHH
Confidence 5555544
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=96.88 E-value=1 Score=49.63 Aligned_cols=375 Identities=15% Similarity=0.146 Sum_probs=191.0
Q ss_pred CCCHHHHHHHHHHHHHhhcchHHHHHHHHhcCCCCCHHHHHHH-----HHhhcc--CchhHHHHHHHhhcCCCCCCCHHH
Q 036072 175 TADPREIERVCKVIDELFSLDRNMEAVLDECGINLSHNLVVDV-----LERFRH--ARRPAFRFFCWAGDKPGFAHNSRT 247 (631)
Q Consensus 175 ~~~~~~l~~~~~~i~~~~~~~~~l~~~l~~~~~~~~~~~~~~v-----l~~~~~--~~~~A~~~f~~~~~~~g~~p~~~~ 247 (631)
..++.+..++|+.+.-+-.+ .....|+++|.+.|..+ +.++-. ....|.++-.|+....+.- ..+
T Consensus 402 ~~~~d~~~~v~~~lrVln~~------r~~~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~--~~V 473 (829)
T KOG2280|consen 402 TPNPDEYMRVCRELRVLNAL------RDVRIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPESQG--DRV 473 (829)
T ss_pred cCChHHHHHHHHHHHHHhhh------cccccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCccccc--cHH
Confidence 36677777888776543221 12456888887776543 333322 2234777777774333211 455
Q ss_pred HHHHHHHHHhcCC---hhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCC----cCHHHHHHH
Q 036072 248 YNSMMSILGRARQ---FETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFK----AGVDTINCL 320 (631)
Q Consensus 248 y~~li~~~~~~g~---~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~----~~~~~~~~L 320 (631)
|.....-+.+..+ -+.+..+-+++... ..+.-.|..+.+.....|+.+.|..+++.=...+-. .+..-+...
T Consensus 474 l~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~A 552 (829)
T KOG2280|consen 474 LLEWARRKIKQSDKMDEEVLDKIDEKLSAK-LTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLA 552 (829)
T ss_pred HHHHHHHHHhccCccchHHHHHHHHHhccc-CCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHH
Confidence 6666666665532 22233333333332 233345667777777778888887776543322210 011112223
Q ss_pred HHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 036072 321 LENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRS 400 (631)
Q Consensus 321 l~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~ 400 (631)
+.-+.+.|+.+....++-.+.... +...|...+ .+.-.|..+|.+..+..-+ . .+-+.| ..++-.
T Consensus 553 L~kaies~d~~Li~~Vllhlk~~~--~~s~l~~~l------~~~p~a~~lY~~~~r~~~~---~---~l~d~y-~q~dn~ 617 (829)
T KOG2280|consen 553 LKKAIESGDTDLIIQVLLHLKNKL--NRSSLFMTL------RNQPLALSLYRQFMRHQDR---A---TLYDFY-NQDDNH 617 (829)
T ss_pred HHHHHhcCCchhHHHHHHHHHHHH--HHHHHHHHH------HhchhhhHHHHHHHHhhch---h---hhhhhh-hcccch
Confidence 333444455554444444443220 111111111 2233444444444432100 0 111111 122222
Q ss_pred HHHHHHH--HH----HHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCCCHHHHHH
Q 036072 401 DAIKLFE--VM----KAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEER-GCPPDGLTYNA 473 (631)
Q Consensus 401 ~A~~ll~--~m----~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~ 473 (631)
.+..-|. .. ...|..|+..+.. ..+.+....++. ..+ .++..+-+.+.+.+..+ |......+.+-
T Consensus 618 ~~~a~~~~q~~~~~~~~~~r~~~lk~~a---~~~a~sk~~s~e--~ka---~ed~~kLl~lQ~~Le~q~~~~f~dlSl~d 689 (829)
T KOG2280|consen 618 QALASFHLQASYAAETIEGRIPALKTAA---NAFAKSKEKSFE--AKA---LEDQMKLLKLQRTLEDQFGGSFVDLSLHD 689 (829)
T ss_pred hhhhhhhhhhhhhhhhhcccchhHHHHH---HHHhhhhhhhhH--HHH---HHHHHHHHHHHHHHHHHhccccccCcHHH
Confidence 2222111 00 0112233322211 111111000000 000 01222333344444332 33334445555
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 036072 474 LIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDR 553 (631)
Q Consensus 474 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 553 (631)
-+.-+...|+..+|.++-.+.+ -||-..|-.=+.+++..++|++-+++-+.+. .+.-|.-++.+|.+.|+
T Consensus 690 Tv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskk------sPIGy~PFVe~c~~~~n 759 (829)
T KOG2280|consen 690 TVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKK------SPIGYLPFVEACLKQGN 759 (829)
T ss_pred HHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccC------CCCCchhHHHHHHhccc
Confidence 6666778899999988877654 5788888888999999999998777665543 35667888999999999
Q ss_pred HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036072 554 SGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600 (631)
Q Consensus 554 ~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 600 (631)
.+||.+++.+.-.. .-.+.+|.+.|++.+|.++.-+-+
T Consensus 760 ~~EA~KYiprv~~l---------~ekv~ay~~~~~~~eAad~A~~~r 797 (829)
T KOG2280|consen 760 KDEAKKYIPRVGGL---------QEKVKAYLRVGDVKEAADLAAEHR 797 (829)
T ss_pred HHHHhhhhhccCCh---------HHHHHHHHHhccHHHHHHHHHHhc
Confidence 99999998764321 156788899999988888775544
|
|
| >PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional | Back alignment and domain information |
|---|
Probab=96.87 E-value=0.027 Score=58.65 Aligned_cols=100 Identities=9% Similarity=-0.131 Sum_probs=84.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChH
Q 036072 252 MSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPK 331 (631)
Q Consensus 252 i~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~ 331 (631)
...+...|+++.|+.+|++..+..+-+...|..+..+|...|++++|+..++.+++.. +.+...|..+..+|...|+++
T Consensus 9 a~~a~~~~~~~~Ai~~~~~Al~~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~-P~~~~a~~~lg~~~~~lg~~~ 87 (356)
T PLN03088 9 AKEAFVDDDFALAVDLYTQAIDLDPNNAELYADRAQANIKLGNFTEAVADANKAIELD-PSLAKAYLRKGTACMKLEEYQ 87 (356)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCCHH
Confidence 4456678999999999999999888888899999999999999999999999999875 557788888899999999999
Q ss_pred HHHHHHHHHhcccCCChhhHH
Q 036072 332 EAQLLFDKLKHRFTPNLTTYT 352 (631)
Q Consensus 332 ~A~~l~~~m~~~~~p~~~~y~ 352 (631)
+|...|+...+..+.+.....
T Consensus 88 eA~~~~~~al~l~P~~~~~~~ 108 (356)
T PLN03088 88 TAKAALEKGASLAPGDSRFTK 108 (356)
T ss_pred HHHHHHHHHHHhCCCCHHHHH
Confidence 999999998765444444433
|
|
| >PRK02603 photosystem I assembly protein Ycf3; Provisional | Back alignment and domain information |
|---|
Probab=96.84 E-value=0.051 Score=50.16 Aligned_cols=129 Identities=15% Similarity=0.094 Sum_probs=75.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036072 434 AVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPD--GLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMK 511 (631)
Q Consensus 434 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~ 511 (631)
..+..+...+...|++++|...|++..+....+. ...+..+...+.+.|++++|...+.+..+.. +-+...+..+..
T Consensus 36 ~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 114 (172)
T PRK02603 36 FVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELN-PKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHH
Confidence 3455566667777888888888877765433222 3466667777777788888888777777642 223555566666
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 036072 512 SYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588 (631)
Q Consensus 512 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~ 588 (631)
+|...|+...+..-++.... .+++|.+++++....+ |+ .|..++..+...|+
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~---------------------~~~~A~~~~~~a~~~~--p~--~~~~~~~~~~~~~~ 166 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEA---------------------LFDKAAEYWKQAIRLA--PN--NYIEAQNWLKTTGR 166 (172)
T ss_pred HHHHcCChHhHhhCHHHHHH---------------------HHHHHHHHHHHHHhhC--ch--hHHHHHHHHHhcCc
Confidence 66666665444433322211 1456677777766542 22 24455555544443
|
|
| >PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A | Back alignment and domain information |
|---|
Probab=96.83 E-value=0.036 Score=55.83 Aligned_cols=165 Identities=15% Similarity=0.165 Sum_probs=104.9
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHh----CCCCcC--
Q 036072 246 RTYNSMMSILGRARQFETMVSMLEEMGEK----GLL--SMETFKIAMNAFAAAKERKKAVAIFELMNK----YKFKAG-- 313 (631)
Q Consensus 246 ~~y~~li~~~~~~g~~~~A~~l~~~m~~~----g~~--~~~~~~~li~~~~~~g~~~~A~~v~~~m~~----~g~~~~-- 313 (631)
..|+.....|-..+++++|.+.|.+.... +-. ....|.....+|.+. ++++|++.++...+ .| .++
T Consensus 36 ~~y~~Aa~~fk~~~~~~~A~~ay~kAa~~~~~~~~~~~Aa~~~~~Aa~~~k~~-~~~~Ai~~~~~A~~~y~~~G-~~~~a 113 (282)
T PF14938_consen 36 DLYEKAANCFKLAKDWEKAAEAYEKAADCYEKLGDKFEAAKAYEEAANCYKKG-DPDEAIECYEKAIEIYREAG-RFSQA 113 (282)
T ss_dssp HHHHHHHHHHHHTT-CHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHT-THHHHHHHHHHHHHHHHHCT--HHHH
T ss_pred HHHHHHHHHHHHHhccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhh-CHHHHHHHHHHHHHHHHhcC-cHHHH
Confidence 44556666677777777777777765432 111 122555555555444 77788877776654 23 222
Q ss_pred HHHHHHHHHHHHcC-CChHHHHHHHHHHhccc----CC--ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-----
Q 036072 314 VDTINCLLENLGRS-KLPKEAQLLFDKLKHRF----TP--NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKP----- 381 (631)
Q Consensus 314 ~~~~~~Ll~~~~~~-g~~~~A~~l~~~m~~~~----~p--~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p----- 381 (631)
...+..+...|-.. |+++.|.+.|++..+-+ .+ -...+..+...+.+.|++++|.++|++....-...
T Consensus 114 A~~~~~lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~ 193 (282)
T PF14938_consen 114 AKCLKELAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKY 193 (282)
T ss_dssp HHHHHHHHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccch
Confidence 34566677788888 89999999999875421 11 13456778889999999999999999988653322
Q ss_pred CHH-HHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036072 382 DVV-AHNIMLEGLLKIGKRSDAIKLFEVMKAK 412 (631)
Q Consensus 382 ~~~-ty~~li~~~~~~g~~~~A~~ll~~m~~~ 412 (631)
+.. .|-..+-++...||...|.+.+++....
T Consensus 194 ~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~ 225 (282)
T PF14938_consen 194 SAKEYFLKAILCHLAMGDYVAARKALERYCSQ 225 (282)
T ss_dssp HHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTT
T ss_pred hHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 222 2233444667789999999999998764
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.81 E-value=0.023 Score=52.21 Aligned_cols=96 Identities=15% Similarity=0.022 Sum_probs=61.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036072 468 GLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKP--TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545 (631)
Q Consensus 468 ~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li 545 (631)
...|..+...+...|++++|+..|++.......+ ...++..+..+|...|++++|...++....... ....++..+.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~-~~~~~~~~la 113 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNP-FLPQALNNMA 113 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCc-CcHHHHHHHH
Confidence 3455666666777788888888888877643222 234677777888888888888888887776422 1344455555
Q ss_pred HHHH-------HcCCHHHHHHHHHHH
Q 036072 546 GGLI-------SQDRSGEAYKYLEEM 564 (631)
Q Consensus 546 ~~~~-------~~g~~~~A~~ll~~m 564 (631)
..+. ..|++++|...+++.
T Consensus 114 ~i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 114 VICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHH
Confidence 5555 666666555555543
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.79 E-value=0.14 Score=49.07 Aligned_cols=143 Identities=13% Similarity=-0.016 Sum_probs=99.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHH---
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCL--- 320 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~-~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~L--- 320 (631)
..+-+.++..+.-.|.+.-...++++..+.+. .++.....|++.-.+.|+.+.|...|+...+..-..+..+++.+
T Consensus 177 ~~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~ 256 (366)
T KOG2796|consen 177 GRVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLM 256 (366)
T ss_pred HHHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHh
Confidence 46667788888888889888999999888775 47778888888888899999999998877654333443333333
Q ss_pred --HHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 036072 321 --LENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIM 389 (631)
Q Consensus 321 --l~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~l 389 (631)
...|.-.+++..|...|.++....+-|+...|.-.-+..-.|+..+|.+.++.|.+. .|...+-+++
T Consensus 257 n~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~--~P~~~l~es~ 325 (366)
T KOG2796|consen 257 NSAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQ--DPRHYLHESV 325 (366)
T ss_pred hhhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhcc--CCccchhhhH
Confidence 234555677777777777776655556666665555555667888888888888775 4444444433
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.76 E-value=0.088 Score=47.03 Aligned_cols=87 Identities=8% Similarity=-0.019 Sum_probs=43.4
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 036072 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEA 557 (631)
Q Consensus 478 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 557 (631)
+...|++++|.++|+-+.... .-+..-|..|..+|-..|++++|+..|.......+. |+..+-.+..++...|+.+.|
T Consensus 45 ly~~G~l~~A~~~f~~L~~~D-p~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~d-dp~~~~~ag~c~L~lG~~~~A 122 (157)
T PRK15363 45 LMEVKEFAGAARLFQLLTIYD-AWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKID-APQAPWAAAECYLACDNVCYA 122 (157)
T ss_pred HHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CchHHHHHHHHHHHcCCHHHH
Confidence 445555555555555554432 123334444455555555555555555555544332 444455555555555555555
Q ss_pred HHHHHHHHH
Q 036072 558 YKYLEEMLE 566 (631)
Q Consensus 558 ~~ll~~m~~ 566 (631)
.+.|+..+.
T Consensus 123 ~~aF~~Ai~ 131 (157)
T PRK15363 123 IKALKAVVR 131 (157)
T ss_pred HHHHHHHHH
Confidence 555554443
|
|
| >CHL00033 ycf3 photosystem I assembly protein Ycf3 | Back alignment and domain information |
|---|
Probab=96.70 E-value=0.034 Score=51.11 Aligned_cols=92 Identities=7% Similarity=-0.140 Sum_probs=43.9
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhCCCCc--CHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHH
Q 036072 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKA--GVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGW 358 (631)
Q Consensus 281 ~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~--~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~ 358 (631)
.+..+...+...|++++|+..|+........+ ...++..+...|...|+.++|...++......+....+++.+...+
T Consensus 37 ~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~ 116 (168)
T CHL00033 37 TYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVIC 116 (168)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHH
Confidence 34444444555555555555555554432111 1234555555555556666666655555443333334444444444
Q ss_pred H-------hcCCHHHHHHHHH
Q 036072 359 C-------RVKNLMEAGRVWN 372 (631)
Q Consensus 359 ~-------~~g~~~~A~~l~~ 372 (631)
. +.|+++.|...++
T Consensus 117 ~~~~~~~~~~g~~~~A~~~~~ 137 (168)
T CHL00033 117 HYRGEQAIEQGDSEIAEAWFD 137 (168)
T ss_pred HHhhHHHHHcccHHHHHHHHH
Confidence 4 4555554444443
|
|
| >PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional | Back alignment and domain information |
|---|
Probab=96.67 E-value=0.079 Score=47.31 Aligned_cols=92 Identities=10% Similarity=-0.027 Sum_probs=64.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCC
Q 036072 250 SMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKL 329 (631)
Q Consensus 250 ~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~ 329 (631)
.+...+...|++++|..+|+-+...++.+..-|-.|..++-..|++++|+..|....... +-++..+-.+..++...|+
T Consensus 40 ~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~-~ddp~~~~~ag~c~L~lG~ 118 (157)
T PRK15363 40 RYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIK-IDAPQAPWAAAECYLACDN 118 (157)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcCC
Confidence 344445566777777777777777777666677777777777777777777777777766 4566666677777777777
Q ss_pred hHHHHHHHHHHhc
Q 036072 330 PKEAQLLFDKLKH 342 (631)
Q Consensus 330 ~~~A~~l~~~m~~ 342 (631)
.+.|.+.|+....
T Consensus 119 ~~~A~~aF~~Ai~ 131 (157)
T PRK15363 119 VCYAIKALKAVVR 131 (157)
T ss_pred HHHHHHHHHHHHH
Confidence 7777777766543
|
|
| >COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=96.62 E-value=1.1 Score=46.44 Aligned_cols=321 Identities=12% Similarity=0.099 Sum_probs=176.9
Q ss_pred HHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCC
Q 036072 268 LEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPN 347 (631)
Q Consensus 268 ~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~ 347 (631)
+++-.+.++.+...|-.||..+...+..++..+++++|..- ++.-..+|..-|.+-...+++...+.+|.+-..+ ..+
T Consensus 31 LRerIkdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~p-fp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k-~l~ 108 (660)
T COG5107 31 LRERIKDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSP-FPIMEHAWRLYMSGELARKDFRSVESLFGRCLKK-SLN 108 (660)
T ss_pred HHHHhhcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCC-CccccHHHHHHhcchhhhhhHHHHHHHHHHHHhh-hcc
Confidence 33334456678889999999999999999999999999763 3445667877787777778999999999986543 235
Q ss_pred hhhHHHHHHHHHhcCCHH------HHHHHHHHHH-HcCCCCCH-HHHHHHHHHH---HHcCC------HHHHHHHHHHHH
Q 036072 348 LTTYTVLLGGWCRVKNLM------EAGRVWNEMI-DKGFKPDV-VAHNIMLEGL---LKIGK------RSDAIKLFEVMK 410 (631)
Q Consensus 348 ~~~y~~Li~~~~~~g~~~------~A~~l~~~m~-~~g~~p~~-~ty~~li~~~---~~~g~------~~~A~~ll~~m~ 410 (631)
...|...+..--+.+..- ...+.|+-.. -.++.|-. ..|+..+..+ -..|. +|...+.+.+|.
T Consensus 109 ldLW~lYl~YIRr~n~~~tGq~r~~i~~ayefv~~~~~~e~~s~~~W~ey~~fle~~~~~~kwEeQqrid~iR~~Y~ral 188 (660)
T COG5107 109 LDLWMLYLEYIRRVNNLITGQKRFKIYEAYEFVLGCAIFEPQSENYWDEYGLFLEYIEELGKWEEQQRIDKIRNGYMRAL 188 (660)
T ss_pred HhHHHHHHHHHHhhCcccccchhhhhHHHHHHHHhcccccccccchHHHHHHHHHhccccccHHHHHHHHHHHHHHHHHH
Confidence 777888777666554221 1222333222 24555543 3344444332 22333 344455555554
Q ss_pred HcCCCC---------------cHHHHHHHH-----------HHHhh----------c-----------------------
Q 036072 411 AKGPSP---------------NVRSYTIMI-----------WKFCK----------Q----------------------- 431 (631)
Q Consensus 411 ~~g~~p---------------~~~~~~~li-----------~~~~~----------~----------------------- 431 (631)
.-.+.. +..|-..++ ..|-. .
T Consensus 189 ~tP~~nleklW~dy~~fE~e~N~~TarKfvge~sp~ym~ar~~yqe~~nlt~Gl~v~~~~~~Rt~nK~~r~s~S~WlNwI 268 (660)
T COG5107 189 QTPMGNLEKLWKDYENFELELNKITARKFVGETSPIYMSARQRYQEIQNLTRGLSVKNPINLRTANKAARTSDSNWLNWI 268 (660)
T ss_pred cCccccHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHhccccccCchhhhhhccccccccchhhhHh
Confidence 321110 001100000 00000 0
Q ss_pred --------------------------------CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HH
Q 036072 432 --------------------------------NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LM 478 (631)
Q Consensus 432 --------------------------------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~-~~ 478 (631)
.+.+|----..+...++-+.|+..... |++..+. ....+. .|
T Consensus 269 kwE~en~l~L~~~~~~qRi~y~~~q~~~y~~~~~evw~dys~Y~~~isd~q~al~tv~r----g~~~sps-L~~~lse~y 343 (660)
T COG5107 269 KWEMENGLKLGGRPHEQRIHYIHNQILDYFYYAEEVWFDYSEYLIGISDKQKALKTVER----GIEMSPS-LTMFLSEYY 343 (660)
T ss_pred hHhhcCCcccCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHhhccHHHHHHHHHHh----cccCCCc-hheeHHHHH
Confidence 111111111122233344444443332 2221111 111111 12
Q ss_pred HhcCChhHHHHHHHHHH----------H----CCC---------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 036072 479 KIQKMPDEAVRIYKEMV----------R----SGF---------------KPTIHTYNMIMKSYFQTGNYEMGRKVWDEM 529 (631)
Q Consensus 479 ~~~g~~~~A~~l~~~m~----------~----~g~---------------~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m 529 (631)
.-..+.+.....|+... + .+. ..-...|..+|.+-.+..-++.|..+|-++
T Consensus 344 el~nd~e~v~~~fdk~~q~L~r~ys~~~s~~~s~~D~N~e~~~Ell~kr~~k~t~v~C~~~N~v~r~~Gl~aaR~~F~k~ 423 (660)
T COG5107 344 ELVNDEEAVYGCFDKCTQDLKRKYSMGESESASKVDNNFEYSKELLLKRINKLTFVFCVHLNYVLRKRGLEAARKLFIKL 423 (660)
T ss_pred hhcccHHHHhhhHHHHHHHHHHHHhhhhhhhhccccCCccccHHHHHHHHhhhhhHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 22222222222222111 0 011 011244666777777778899999999999
Q ss_pred HHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHH
Q 036072 530 IRRG-CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQ 597 (631)
Q Consensus 530 ~~~g-~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~ 597 (631)
.+.| +.+++..++++|..++. |+..-|..+|+-=+.. +..+..--...+.-+.+.++-+.|..+|+
T Consensus 424 rk~~~~~h~vyi~~A~~E~~~~-~d~~ta~~ifelGl~~-f~d~~~y~~kyl~fLi~inde~naraLFe 490 (660)
T COG5107 424 RKEGIVGHHVYIYCAFIEYYAT-GDRATAYNIFELGLLK-FPDSTLYKEKYLLFLIRINDEENARALFE 490 (660)
T ss_pred hccCCCCcceeeeHHHHHHHhc-CCcchHHHHHHHHHHh-CCCchHHHHHHHHHHHHhCcHHHHHHHHH
Confidence 9988 67889999999987764 8888899998765543 22333334567777788888877877777
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.58 E-value=0.066 Score=54.31 Aligned_cols=58 Identities=14% Similarity=0.122 Sum_probs=42.6
Q ss_pred HHHHHHHHHH--HHhcCChhHHHHHHHHHHHCCCCCH----HHHHHHHHHHHHccCHHHHHHHH
Q 036072 245 SRTYNSMMSI--LGRARQFETMVSMLEEMGEKGLLSM----ETFKIAMNAFAAAKERKKAVAIF 302 (631)
Q Consensus 245 ~~~y~~li~~--~~~~g~~~~A~~l~~~m~~~g~~~~----~~~~~li~~~~~~g~~~~A~~v~ 302 (631)
...|...+.+ +|+.|+.+.-+.+|+...+.|.-+. .+|.-|.++|.-.+++++|++..
T Consensus 15 ~SCleLalEGERLck~gdcraGv~ff~aA~qvGTeDl~tLSAIYsQLGNAyfyL~DY~kAl~yH 78 (639)
T KOG1130|consen 15 RSCLELALEGERLCKMGDCRAGVDFFKAALQVGTEDLSTLSAIYSQLGNAYFYLKDYEKALKYH 78 (639)
T ss_pred hHHHHHHHHHHHHHhccchhhhHHHHHHHHHhcchHHHHHHHHHHHhcchhhhHhhHHHHHhhh
Confidence 4455555544 7888999999999988888887432 36677777788888888887764
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.53 E-value=0.7 Score=43.90 Aligned_cols=56 Identities=20% Similarity=0.173 Sum_probs=32.3
Q ss_pred HHHHcCCChHHHHHHHHHHhcccCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036072 322 ENLGRSKLPKEAQLLFDKLKHRFTPN---LTTYTVLLGGWCRVKNLMEAGRVWNEMIDK 377 (631)
Q Consensus 322 ~~~~~~g~~~~A~~l~~~m~~~~~p~---~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~ 377 (631)
..+...|++++|...|+.+....+.+ ......++.++.+.|++++|...++++.+.
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~ 71 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKL 71 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 34456677777777777766543322 224445566666777777777777776654
|
|
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=96.50 E-value=0.12 Score=44.35 Aligned_cols=86 Identities=15% Similarity=0.072 Sum_probs=38.5
Q ss_pred HHHHccCHHHHHHHHHHHHhCCCCcC--HHHHHHHHHHHHcCCChHHHHHHHHHHhcccCC---ChhhHHHHHHHHHhcC
Q 036072 288 AFAAAKERKKAVAIFELMNKYKFKAG--VDTINCLLENLGRSKLPKEAQLLFDKLKHRFTP---NLTTYTVLLGGWCRVK 362 (631)
Q Consensus 288 ~~~~~g~~~~A~~v~~~m~~~g~~~~--~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p---~~~~y~~Li~~~~~~g 362 (631)
++-..|+.++|+.+|+.....|.... ...+..+...|...|++++|..+|++....++. +......+..++...|
T Consensus 10 a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L~~~g 89 (120)
T PF12688_consen 10 AHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALALYNLG 89 (120)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHHCC
Confidence 33444555555555555555443322 223333444455555555555555554433222 2222222233444555
Q ss_pred CHHHHHHHHHH
Q 036072 363 NLMEAGRVWNE 373 (631)
Q Consensus 363 ~~~~A~~l~~~ 373 (631)
+.++|++.+-.
T Consensus 90 r~~eAl~~~l~ 100 (120)
T PF12688_consen 90 RPKEALEWLLE 100 (120)
T ss_pred CHHHHHHHHHH
Confidence 55555555443
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.49 E-value=0.0095 Score=45.29 Aligned_cols=52 Identities=12% Similarity=0.188 Sum_probs=32.5
Q ss_pred hcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhC
Q 036072 257 RARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKY 308 (631)
Q Consensus 257 ~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~ 308 (631)
+.|++++|+.+|+++....+-+..++..+..+|.+.|++++|.++++.+...
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~ 54 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQ 54 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGG
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4566666666666666666556666666666666666666666666666654
|
... |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.48 E-value=0.13 Score=56.21 Aligned_cols=67 Identities=13% Similarity=-0.037 Sum_probs=55.6
Q ss_pred cCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036072 344 FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412 (631)
Q Consensus 344 ~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~ 412 (631)
.+.+..+|.++.-.+...|++++|...+++..+. .|+...|..+...+...|+.++|.+.+++....
T Consensus 416 ~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L--~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L 482 (517)
T PRK10153 416 LNVLPRIYEILAVQALVKGKTDEAYQAINKAIDL--EMSWLNYVLLGKVYELKGDNRLAADAYSTAFNL 482 (517)
T ss_pred CcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 3445577888877777789999999999999886 468888999999999999999999999888774
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.72 Score=42.09 Aligned_cols=156 Identities=14% Similarity=0.164 Sum_probs=116.7
Q ss_pred CCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCCHHH
Q 036072 464 CPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG---CCPDDNS 540 (631)
Q Consensus 464 ~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~t 540 (631)
..|+...--.|..+....|+..+|...|++...--+.-|....-.+.++....+++.+|...++++.+.. -.|| +
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd--~ 162 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPD--G 162 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCC--c
Confidence 4577777778899999999999999999998876566788888899999999999999999999988753 3344 3
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH----HHHHHHHhcCCCchHHHHHHHHH
Q 036072 541 YTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLD----ELAQKMRFSGKFEVSNVLARWAE 616 (631)
Q Consensus 541 ~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~----~l~~~m~~~g~~~~~~~l~~~~~ 616 (631)
.-.+.+.|...|++.+|..-|+...+. -|+...-......+.++|+.+++. ++++.++.+-..-. +--.+|.+
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v~d~~~r~~~H~r-kh~reW~~ 239 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAVVDTAKRSRPHYR-KHHREWIK 239 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcchhHH-HHHHHHHH
Confidence 445778889999999999999999885 556555555667778888776654 45555554443222 33347777
Q ss_pred hhhhhhhc
Q 036072 617 TTKNRVYR 624 (631)
Q Consensus 617 ~~k~~~~~ 624 (631)
....+.++
T Consensus 240 ~A~~~~~q 247 (251)
T COG4700 240 TANERLKQ 247 (251)
T ss_pred HHHHHHHh
Confidence 66555543
|
|
| >PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.0098 Score=45.23 Aligned_cols=50 Identities=18% Similarity=0.133 Sum_probs=24.2
Q ss_pred CCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036072 327 SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMID 376 (631)
Q Consensus 327 ~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~ 376 (631)
.|++++|..+|+.+....+-+..++..+..+|.+.|++++|..+++.+..
T Consensus 4 ~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~ 53 (68)
T PF14559_consen 4 QGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLK 53 (68)
T ss_dssp TTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHG
T ss_pred ccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44455555555554444444444444555555555555555555555444
|
... |
| >PRK10153 DNA-binding transcriptional activator CadC; Provisional | Back alignment and domain information |
|---|
Probab=96.42 E-value=0.14 Score=55.81 Aligned_cols=144 Identities=10% Similarity=-0.021 Sum_probs=104.2
Q ss_pred CCCCCHHHHHHHHHHHHhc-----CChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcc--------CHHHHHHHHHHHH
Q 036072 240 GFAHNSRTYNSMMSILGRA-----RQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAK--------ERKKAVAIFELMN 306 (631)
Q Consensus 240 g~~p~~~~y~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g--------~~~~A~~v~~~m~ 306 (631)
....|...|...+++.... ++.+.|..+|++..+..+-....|..+..++.... +...+.+..+...
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKSEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 3456788898888886543 23779999999999998877777776655544331 2234444444433
Q ss_pred hC-CCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 036072 307 KY-KFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVA 385 (631)
Q Consensus 307 ~~-g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 385 (631)
.. ....+...|..+.-.+...|++++|...+++..+.. |+...|..+...+...|+.++|.+.|++.... .|...+
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~-ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L--~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLE-MSWLNYVLLGKVYELKGDNRLAADAYSTAFNL--RPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCch
Confidence 32 234456777777666667899999999999987654 57889999999999999999999999998875 455445
Q ss_pred H
Q 036072 386 H 386 (631)
Q Consensus 386 y 386 (631)
|
T Consensus 489 ~ 489 (517)
T PRK10153 489 L 489 (517)
T ss_pred H
Confidence 4
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.37 E-value=1.2 Score=48.20 Aligned_cols=88 Identities=14% Similarity=0.115 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----------
Q 036072 469 LTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD---------- 538 (631)
Q Consensus 469 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~---------- 538 (631)
.+...+..-+-+...+..|-++|..|-+. ..+++.....++|++|..+-+...+. .||+
T Consensus 748 e~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~dVy~pyaqwLAE 816 (1081)
T KOG1538|consen 748 EPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDDVYMPYAQWLAE 816 (1081)
T ss_pred hHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--cccccchHHHHhhh
Confidence 34444444455566667777777776432 24566677777888777776665542 2222
Q ss_pred -HHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 036072 539 -NSYTVLIGGLISQDRSGEAYKYLEEMLEK 567 (631)
Q Consensus 539 -~t~~~li~~~~~~g~~~~A~~ll~~m~~~ 567 (631)
.-|.-.-.+|.++|+..||..+++++...
T Consensus 817 ~DrFeEAqkAfhkAGr~~EA~~vLeQLtnn 846 (1081)
T KOG1538|consen 817 NDRFEEAQKAFHKAGRQREAVQVLEQLTNN 846 (1081)
T ss_pred hhhHHHHHHHHHHhcchHHHHHHHHHhhhh
Confidence 12333345677888888888888887654
|
|
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.31 E-value=0.15 Score=50.24 Aligned_cols=116 Identities=16% Similarity=0.180 Sum_probs=85.2
Q ss_pred hhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcC---CChHHHHHHH
Q 036072 261 FETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS---KLPKEAQLLF 337 (631)
Q Consensus 261 ~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~---g~~~~A~~l~ 337 (631)
.+....-++.-...++-|.+.|-.|..+|...|+++.|...|....+.. ..+...+..+..++... .+..++..+|
T Consensus 138 ~~~l~a~Le~~L~~nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll 216 (287)
T COG4235 138 MEALIARLETHLQQNPGDAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALL 216 (287)
T ss_pred HHHHHHHHHHHHHhCCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHH
Confidence 3344444555556677788888888888888888888888888888764 55666666666655433 3456778888
Q ss_pred HHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036072 338 DKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK 377 (631)
Q Consensus 338 ~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~ 377 (631)
+++....+-|+.+...|...+...|++.+|...|+.|.+.
T Consensus 217 ~~al~~D~~~iral~lLA~~afe~g~~~~A~~~Wq~lL~~ 256 (287)
T COG4235 217 RQALALDPANIRALSLLAFAAFEQGDYAEAAAAWQMLLDL 256 (287)
T ss_pred HHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhc
Confidence 8887776677778888888888888888888888888875
|
|
| >KOG2796 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=96.27 E-value=0.097 Score=50.12 Aligned_cols=134 Identities=10% Similarity=0.057 Sum_probs=102.1
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH---
Q 036072 434 AVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIM--- 510 (631)
Q Consensus 434 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li--- 510 (631)
.+.++++..+...|.+.-...++.+.++...+-++.....|.+.-.+.|+.+.|...|++..+..-+.|..+++.++
T Consensus 178 ~Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 178 RVMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhh
Confidence 45566777777888899999999999998777788888999999999999999999999887654455554544443
Q ss_pred --HHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 036072 511 --KSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568 (631)
Q Consensus 511 --~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g 568 (631)
..|.-.+++..|...+.++...+.. |+...|.-.-++...|+..+|++.++.|+...
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~-~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~ 316 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPR-NAVANNNKALCLLYLGKLKDALKQLEAMVQQD 316 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCC-chhhhchHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 3455677899999999988876433 55555544444556799999999999999863
|
|
| >PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A | Back alignment and domain information |
|---|
Probab=96.09 E-value=0.53 Score=44.75 Aligned_cols=171 Identities=13% Similarity=0.084 Sum_probs=96.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcC
Q 036072 251 MMSILGRARQFETMVSMLEEMGEKGLL---SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS 327 (631)
Q Consensus 251 li~~~~~~g~~~~A~~l~~~m~~~g~~---~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~ 327 (631)
....+...|++++|...|+.+....+. ...+.-.++.++.+.|+++.|...++.+.+.-..-....+...+.+.+..
T Consensus 11 ~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~ 90 (203)
T PF13525_consen 11 KALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYY 90 (203)
T ss_dssp HHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHH
Confidence 444556789999999999999887552 45577788889999999999999999987752111112222222222111
Q ss_pred C-------------ChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 036072 328 K-------------LPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLL 394 (631)
Q Consensus 328 g-------------~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~ 394 (631)
. ...+|.. .+..++.-|=...-..+|...+..+.+. =...--.+...|.
T Consensus 91 ~~~~~~~~~~~D~~~~~~A~~--------------~~~~li~~yP~S~y~~~A~~~l~~l~~~----la~~e~~ia~~Y~ 152 (203)
T PF13525_consen 91 KQIPGILRSDRDQTSTRKAIE--------------EFEELIKRYPNSEYAEEAKKRLAELRNR----LAEHELYIARFYY 152 (203)
T ss_dssp HHHHHHH-TT---HHHHHHHH--------------HHHHHHHH-TTSTTHHHHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HhCccchhcccChHHHHHHHH--------------HHHHHHHHCcCchHHHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 1 1122233 3444555555555556666655555432 0111123567788
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHH
Q 036072 395 KIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIV 452 (631)
Q Consensus 395 ~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A 452 (631)
+.|.+..|..-++.+.+. -|+.... ..+...++.+|.+.|..+.+
T Consensus 153 ~~~~y~aA~~r~~~v~~~--yp~t~~~-----------~~al~~l~~~y~~l~~~~~a 197 (203)
T PF13525_consen 153 KRGKYKAAIIRFQYVIEN--YPDTPAA-----------EEALARLAEAYYKLGLKQAA 197 (203)
T ss_dssp CTT-HHHHHHHHHHHHHH--STTSHHH-----------HHHHHHHHHHHHHTT-HHHH
T ss_pred HcccHHHHHHHHHHHHHH--CCCCchH-----------HHHHHHHHHHHHHhCChHHH
Confidence 889999999999888875 2332221 12344556667777766643
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=96.08 E-value=0.027 Score=42.38 Aligned_cols=55 Identities=15% Similarity=0.038 Sum_probs=27.8
Q ss_pred HHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036072 322 ENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMID 376 (631)
Q Consensus 322 ~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~ 376 (631)
..+...|++++|..+|+++.+..+-+...+..+..++...|++++|...|+++.+
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~ 59 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALE 59 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444455555555555555544444445555555555555555555555555543
|
|
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=96.05 E-value=0.083 Score=51.73 Aligned_cols=102 Identities=15% Similarity=0.181 Sum_probs=79.8
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 036072 441 TGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE 520 (631)
Q Consensus 441 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~ 520 (631)
.-..+.+++.+|+..|.+.++.... |.+.|..=..+|++.|+++.|++=.+..+... .-...+|..|-.+|...|+++
T Consensus 89 N~~m~~~~Y~eAv~kY~~AI~l~P~-nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~ 166 (304)
T KOG0553|consen 89 NKLMKNKDYQEAVDKYTEAIELDPT-NAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYE 166 (304)
T ss_pred HHHHHhhhHHHHHHHHHHHHhcCCC-cchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHH
Confidence 4477788999999999998886333 67777888889999999999998888887753 223678999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036072 521 MGRKVWDEMIRRGCCPDDNSYTVLIG 546 (631)
Q Consensus 521 ~A~~~~~~m~~~g~~p~~~t~~~li~ 546 (631)
+|++.|++.++. .|+-.+|-.=+.
T Consensus 167 ~A~~aykKaLel--dP~Ne~~K~nL~ 190 (304)
T KOG0553|consen 167 EAIEAYKKALEL--DPDNESYKSNLK 190 (304)
T ss_pred HHHHHHHhhhcc--CCCcHHHHHHHH
Confidence 999999988864 566666654443
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=96.03 E-value=1.4 Score=45.20 Aligned_cols=52 Identities=15% Similarity=0.118 Sum_probs=24.5
Q ss_pred hcCChhHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 480 IQKMPDEAVRIYKEMVR---SGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIR 531 (631)
Q Consensus 480 ~~g~~~~A~~l~~~m~~---~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~ 531 (631)
+.|.+..|.+.|.+.+. ..++++...|.....+..+.|+..+|+.--++..+
T Consensus 261 k~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~ 315 (486)
T KOG0550|consen 261 KNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK 315 (486)
T ss_pred hccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh
Confidence 44445555555555443 23334444444444444455555555554444443
|
|
| >KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=96.03 E-value=0.42 Score=48.77 Aligned_cols=131 Identities=12% Similarity=0.005 Sum_probs=74.9
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHH----HHcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHH----CCC-CCCHH
Q 036072 435 VYTCLITGFGNRRRMDIVYDLLKEM----EERGCPP-DGLTYNALIKLMKIQKMPDEAVRIYKEMVR----SGF-KPTIH 504 (631)
Q Consensus 435 ~~~~li~~~~~~g~~~~A~~l~~~m----~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~l~~~m~~----~g~-~p~~~ 504 (631)
.|..|.+.|.-.|+++.|+...+.- ++-|-.. --..+..+-.++.-.|+++.|.+.|+.... .|- .....
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 3445555555667777776554432 1222211 123556666777777778887777765432 221 12344
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036072 505 TYNMIMKSYFQTGNYEMGRKVWDEMIRR-----GCCPDDNSYTVLIGGLISQDRSGEAYKYLEEML 565 (631)
Q Consensus 505 t~~~Li~~~~~~g~~~~A~~~~~~m~~~-----g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~ 565 (631)
...+|...|.-..++++|+.++.+-+.. ...-....+..|..+|...|..++|+.+.+.-+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl 342 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHL 342 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHH
Confidence 5556777777777777777776643321 111134566677777777777777777665543
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.97 E-value=2.2 Score=43.49 Aligned_cols=321 Identities=13% Similarity=0.094 Sum_probs=187.2
Q ss_pred HHHhhccCchhHHHHHHHhhcCCCCCCCHHHHHHHHHHHH--hcCChhHHHHHHHHHHHCCCCCHHHHHHHH--HHHHHc
Q 036072 217 VLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILG--RARQFETMVSMLEEMGEKGLLSMETFKIAM--NAFAAA 292 (631)
Q Consensus 217 vl~~~~~~~~~A~~~f~~~~~~~g~~p~~~~y~~li~~~~--~~g~~~~A~~l~~~m~~~g~~~~~~~~~li--~~~~~~ 292 (631)
++...-.++..+.+.|..-.++ ..|..|=.++. -.|+-..|.++-.+..+.=.-+.+..--|+ ++-.-.
T Consensus 61 lv~~iw~sP~t~~Ryfr~rKRd-------rgyqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~e 133 (531)
T COG3898 61 LVRSIWESPYTARRYFRERKRD-------RGYQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLE 133 (531)
T ss_pred HHHHHHhCcHHHHHHHHHHHhh-------hHHHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhc
Confidence 3444455556677777765544 44566666654 357777887776665432222333333333 444556
Q ss_pred cCHHHHHHHHHHHHhCCCCcCHH--HHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHH
Q 036072 293 KERKKAVAIFELMNKYKFKAGVD--TINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRV 370 (631)
Q Consensus 293 g~~~~A~~v~~~m~~~g~~~~~~--~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l 370 (631)
|+++.|.+-|+.|... |... -+..|.-..-+.|+.+.|..+-+..-..-+--...+.+.+...|..|+|+.|+++
T Consensus 134 G~~~~Ar~kfeAMl~d---PEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkL 210 (531)
T COG3898 134 GDYEDARKKFEAMLDD---PETRLLGLRGLYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKL 210 (531)
T ss_pred CchHHHHHHHHHHhcC---hHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHH
Confidence 9999999999999863 2222 2233444445678999988888877665444567888999999999999999999
Q ss_pred HHHHHHc-CCCCCHHHH--HHHHHHHHH---cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHh
Q 036072 371 WNEMIDK-GFKPDVVAH--NIMLEGLLK---IGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFG 444 (631)
Q Consensus 371 ~~~m~~~-g~~p~~~ty--~~li~~~~~---~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~ 444 (631)
++.-+.. -+.++..-- ..|+.+-.. .-+...|...-.+..+ +.||..--. -.-..++.
T Consensus 211 vd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaa--------------v~AAralf 274 (531)
T COG3898 211 VDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAA--------------VVAARALF 274 (531)
T ss_pred HHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHH--------------HHHHHHHH
Confidence 9887754 244443221 222222111 1233444443333332 334422111 11245677
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH-CCCCCC-HHHHHHHHHHHHHcCCHHHH
Q 036072 445 NRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVR-SGFKPT-IHTYNMIMKSYFQTGNYEMG 522 (631)
Q Consensus 445 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~-~g~~p~-~~t~~~Li~~~~~~g~~~~A 522 (631)
+.|+..++-.+++.+-+...-|+. + ..|....--+.++.-+++..+ ..++|| ......+..+-...|++..|
T Consensus 275 ~d~~~rKg~~ilE~aWK~ePHP~i--a----~lY~~ar~gdta~dRlkRa~~L~slk~nnaes~~~va~aAlda~e~~~A 348 (531)
T COG3898 275 RDGNLRKGSKILETAWKAEPHPDI--A----LLYVRARSGDTALDRLKRAKKLESLKPNNAESSLAVAEAALDAGEFSAA 348 (531)
T ss_pred hccchhhhhhHHHHHHhcCCChHH--H----HHHHHhcCCCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHhccchHHH
Confidence 778888888888888776544442 2 223333333344444444433 123443 44555666777777887777
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCC
Q 036072 523 RKVWDEMIRRGCCPDDNSYTVLIGGLIS-QDRSGEAYKYLEEMLEKGMKA 571 (631)
Q Consensus 523 ~~~~~~m~~~g~~p~~~t~~~li~~~~~-~g~~~~A~~ll~~m~~~g~~p 571 (631)
..--+.... ..|....|-.|.+.-.. .|+-.++...+-+.+...-.|
T Consensus 349 Ra~Aeaa~r--~~pres~~lLlAdIeeAetGDqg~vR~wlAqav~APrdP 396 (531)
T COG3898 349 RAKAEAAAR--EAPRESAYLLLADIEEAETGDQGKVRQWLAQAVKAPRDP 396 (531)
T ss_pred HHHHHHHhh--hCchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCCCCC
Confidence 666555544 35666677666655443 377788887777776653333
|
|
| >PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B | Back alignment and domain information |
|---|
Probab=95.97 E-value=0.028 Score=42.26 Aligned_cols=56 Identities=11% Similarity=0.119 Sum_probs=33.7
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhC
Q 036072 253 SILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKY 308 (631)
Q Consensus 253 ~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~ 308 (631)
..+.+.|++++|...|+++.+..+-+...+..+..++...|++++|...|+.+.+.
T Consensus 5 ~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~ 60 (65)
T PF13432_consen 5 RALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALEL 60 (65)
T ss_dssp HHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 44555666666666666666665555556666666666666666666666666543
|
|
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=95.94 E-value=0.043 Score=41.78 Aligned_cols=60 Identities=22% Similarity=0.298 Sum_probs=26.5
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHH
Q 036072 505 TYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQD-RSGEAYKYLEEML 565 (631)
Q Consensus 505 t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g-~~~~A~~ll~~m~ 565 (631)
+|..+...+...|++++|+..|++.++.... +...|..+..+|...| ++++|++.+++.+
T Consensus 5 ~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~-~~~~~~~~g~~~~~~~~~~~~A~~~~~~al 65 (69)
T PF13414_consen 5 AWYNLGQIYFQQGDYEEAIEYFEKAIELDPN-NAEAYYNLGLAYMKLGKDYEEAIEDFEKAL 65 (69)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHHTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CHHHHHHHHHHHHHhCccHHHHHHHHHHHH
Confidence 3444444444444444444444444443211 3334444444444444 3444444444443
|
... |
| >PF12688 TPR_5: Tetratrico peptide repeat | Back alignment and domain information |
|---|
Probab=95.93 E-value=0.48 Score=40.62 Aligned_cols=54 Identities=13% Similarity=0.276 Sum_probs=26.4
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 478 MKIQKMPDEAVRIYKEMVRSGFKPT--IHTYNMIMKSYFQTGNYEMGRKVWDEMIR 531 (631)
Q Consensus 478 ~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~Li~~~~~~g~~~~A~~~~~~m~~ 531 (631)
+-..|+.++|+.+|++..+.|.... ...+-.+...|...|++++|..++++...
T Consensus 11 ~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~ 66 (120)
T PF12688_consen 11 HDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALE 66 (120)
T ss_pred HHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3444555555555555555443332 22334444455555555555555555544
|
|
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=95.88 E-value=0.2 Score=49.55 Aligned_cols=98 Identities=9% Similarity=0.042 Sum_probs=50.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhCC--CCcCHHHHHHH
Q 036072 246 RTYNSMMSILGRARQFETMVSMLEEMGEKGLLS---METFKIAMNAFAAAKERKKAVAIFELMNKYK--FKAGVDTINCL 320 (631)
Q Consensus 246 ~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~---~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g--~~~~~~~~~~L 320 (631)
..|+..+..+.+.|++++|...|+.+.+..+-+ +.++.-+..+|...|++++|...|+.+.+.- -+.....+-.+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 345555555455566666666666666554422 3455555555555666666666665555431 01122333334
Q ss_pred HHHHHcCCChHHHHHHHHHHhcc
Q 036072 321 LENLGRSKLPKEAQLLFDKLKHR 343 (631)
Q Consensus 321 l~~~~~~g~~~~A~~l~~~m~~~ 343 (631)
...+...|+.++|..+|+.+.+.
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~ 246 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKK 246 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHH
Confidence 44444555555555555555443
|
|
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.87 E-value=0.048 Score=48.78 Aligned_cols=73 Identities=18% Similarity=0.280 Sum_probs=56.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh-----CCCCcCHHHH
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNK-----YKFKAGVDTI 317 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~-----~g~~~~~~~~ 317 (631)
......++..+...|+++.|..+.+.+....+.+...|..+|.+|...|+...|+++|+.+.+ .|+.|+..+-
T Consensus 62 ~~~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 62 LDALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 456667777788899999999999999999999999999999999999999999999988854 4888877654
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A | Back alignment and domain information |
|---|
Probab=95.81 E-value=0.041 Score=41.86 Aligned_cols=63 Identities=16% Similarity=0.151 Sum_probs=42.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHh
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAK-ERKKAVAIFELMNK 307 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g-~~~~A~~v~~~m~~ 307 (631)
..+|..+-..+...|++++|+..|++..+.++.+..+|..+..++...| ++++|++.|+..++
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~ 66 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALK 66 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHH
Confidence 4566666666677777777777777766666656666666666666666 56666666666554
|
... |
| >COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.66 E-value=0.63 Score=45.93 Aligned_cols=100 Identities=11% Similarity=0.079 Sum_probs=64.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCCHHHHHH
Q 036072 467 DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG---NYEMGRKVWDEMIRRGCCPDDNSYTV 543 (631)
Q Consensus 467 ~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g---~~~~A~~~~~~m~~~g~~p~~~t~~~ 543 (631)
|...|..|-.+|...|+.+.|..-|.+..+.. .+|...+..+..++.... +..++..+|+++...... |..+...
T Consensus 155 d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~-g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~-~iral~l 232 (287)
T COG4235 155 DAEGWDLLGRAYMALGRASDALLAYRNALRLA-GDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPA-NIRALSL 232 (287)
T ss_pred CchhHHHHHHHHHHhcchhHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCc-cHHHHHH
Confidence 66677777777777777777777777776642 334555555555554432 345667777777765433 5556666
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHCC
Q 036072 544 LIGGLISQDRSGEAYKYLEEMLEKG 568 (631)
Q Consensus 544 li~~~~~~g~~~~A~~ll~~m~~~g 568 (631)
|...+...|++.+|...|+.|.+..
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~l 257 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLL 257 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcC
Confidence 6666777777777777777777653
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=95.63 E-value=1 Score=38.74 Aligned_cols=135 Identities=13% Similarity=0.088 Sum_probs=80.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHH---HHHHHHHHHHcCCHHHH
Q 036072 446 RRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHT---YNMIMKSYFQTGNYEMG 522 (631)
Q Consensus 446 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t---~~~Li~~~~~~g~~~~A 522 (631)
.|.+++..+++.+.... -+..-||.+|--....-+-+-..++++.+-+ -.|... .-.++.+|+..|.
T Consensus 15 dG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGk---iFDis~C~NlKrVi~C~~~~n~---- 84 (161)
T PF09205_consen 15 DGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGK---IFDISKCGNLKRVIECYAKRNK---- 84 (161)
T ss_dssp TT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGG---GS-GGG-S-THHHHHHHHHTT-----
T ss_pred hchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhh---hcCchhhcchHHHHHHHHHhcc----
Confidence 46777788888777654 2555666666555555554555555554432 222211 2234444444433
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036072 523 RKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFS 602 (631)
Q Consensus 523 ~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 602 (631)
+....+..+..+...|+-+.-.++++++...+ .+++.....+..+|.+.|+..++.+++++.-++
T Consensus 85 --------------~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACek 149 (161)
T PF09205_consen 85 --------------LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEK 149 (161)
T ss_dssp ----------------HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHT
T ss_pred --------------hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHh
Confidence 33445556777888899998889998887643 677888889999999999999999999999888
Q ss_pred CCC
Q 036072 603 GKF 605 (631)
Q Consensus 603 g~~ 605 (631)
|..
T Consensus 150 G~k 152 (161)
T PF09205_consen 150 GLK 152 (161)
T ss_dssp T-H
T ss_pred chH
Confidence 853
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production | Back alignment and domain information |
|---|
Probab=95.56 E-value=0.12 Score=46.20 Aligned_cols=69 Identities=20% Similarity=0.162 Sum_probs=40.3
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHH
Q 036072 317 INCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMID-----KGFKPDVVA 385 (631)
Q Consensus 317 ~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~t 385 (631)
...++..+...|++++|..+...+....+.|...|..+|.+|...|+..+|.++|+.+.. .|+.|+..+
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~ 138 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPET 138 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHH
Confidence 344555566667777777777776666666666777777777777777777777766542 366666544
|
It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A. |
| >PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex | Back alignment and domain information |
|---|
Probab=95.53 E-value=3.3 Score=42.24 Aligned_cols=106 Identities=18% Similarity=0.068 Sum_probs=72.8
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 036072 439 LITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518 (631)
Q Consensus 439 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~ 518 (631)
.|.-+...|+...|.++-.+. . .|+..-|..-+.+++..+++++-.++... +-++.-|..++.+|.+.|+
T Consensus 183 Ti~~li~~~~~k~A~kl~k~F---k-v~dkrfw~lki~aLa~~~~w~eL~~fa~s------kKsPIGyepFv~~~~~~~~ 252 (319)
T PF04840_consen 183 TIRKLIEMGQEKQAEKLKKEF---K-VPDKRFWWLKIKALAENKDWDELEKFAKS------KKSPIGYEPFVEACLKYGN 252 (319)
T ss_pred HHHHHHHCCCHHHHHHHHHHc---C-CcHHHHHHHHHHHHHhcCCHHHHHHHHhC------CCCCCChHHHHHHHHHCCC
Confidence 355556667777777775554 2 26778888888888888888877765432 1233567788888888888
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 036072 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564 (631)
Q Consensus 519 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m 564 (631)
..+|..+...+. +..-+..|.+.|++.+|.+.--+.
T Consensus 253 ~~eA~~yI~k~~----------~~~rv~~y~~~~~~~~A~~~A~~~ 288 (319)
T PF04840_consen 253 KKEASKYIPKIP----------DEERVEMYLKCGDYKEAAQEAFKE 288 (319)
T ss_pred HHHHHHHHHhCC----------hHHHHHHHHHCCCHHHHHHHHHHc
Confidence 888888777621 234566778888888887665443
|
Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm |
| >KOG0553 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.49 E-value=0.58 Score=46.01 Aligned_cols=88 Identities=15% Similarity=-0.021 Sum_probs=62.3
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHH
Q 036072 255 LGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQ 334 (631)
Q Consensus 255 ~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~ 334 (631)
+.+.++|++|+..|.+..+..+.+..-|..=..+|.+.|.++.|++-.+..+... +-...+|..|-.+|...|++++|.
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iD-p~yskay~RLG~A~~~~gk~~~A~ 169 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSID-PHYSKAYGRLGLAYLALGKYEEAI 169 (304)
T ss_pred HHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcC-hHHHHHHHHHHHHHHccCcHHHHH
Confidence 4556777777777777777766666666667777777777777777777776654 344566777777777777777777
Q ss_pred HHHHHHhcc
Q 036072 335 LLFDKLKHR 343 (631)
Q Consensus 335 ~l~~~m~~~ 343 (631)
+.|.+..+-
T Consensus 170 ~aykKaLel 178 (304)
T KOG0553|consen 170 EAYKKALEL 178 (304)
T ss_pred HHHHhhhcc
Confidence 777766654
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.41 E-value=0.21 Score=43.26 Aligned_cols=50 Identities=18% Similarity=0.071 Sum_probs=27.1
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHH
Q 036072 499 FKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIR-RGCCPDDNSYTVLIGGL 548 (631)
Q Consensus 499 ~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~-~g~~p~~~t~~~li~~~ 548 (631)
..|+..+..+++.+|+..|++..|.++.+...+ .++..+..+|..|+.-.
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 345555555555555555555555555555543 24444555555555433
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PRK10803 tol-pal system protein YbgF; Provisional | Back alignment and domain information |
|---|
Probab=95.36 E-value=0.33 Score=48.08 Aligned_cols=60 Identities=12% Similarity=0.094 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcC----HHHHHHHHHHHHcCCChHHHHHHHHHHhc
Q 036072 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAG----VDTINCLLENLGRSKLPKEAQLLFDKLKH 342 (631)
Q Consensus 281 ~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~----~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~ 342 (631)
.|...+..+.+.|++++|+..|+.+.+.- |+ ...+..+...|...|++++|...|+.+.+
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~y--P~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~ 208 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKKY--PDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVK 208 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHHC--cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34443333344455555555555554432 11 12334444444444555555555444443
|
|
| >COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown] | Back alignment and domain information |
|---|
Probab=95.27 E-value=1.7 Score=39.74 Aligned_cols=131 Identities=15% Similarity=0.035 Sum_probs=93.1
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhccc--CCChhhHHHH
Q 036072 277 LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRF--TPNLTTYTVL 354 (631)
Q Consensus 277 ~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~--~p~~~~y~~L 354 (631)
++..-...|..+....|+..+|...|++...--+--|....-.+.++....+++..|...++.+-+.. .-++.+.-.+
T Consensus 87 pTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~Ll~ 166 (251)
T COG4700 87 PTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGHLLF 166 (251)
T ss_pred hhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCchHHH
Confidence 34445566778888888888888888888876666777788888888888888888888888875421 1133345566
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 036072 355 LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVM 409 (631)
Q Consensus 355 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m 409 (631)
.+.+.-.|.+.+|+.-|+...+. -|+...-...-..+.+.|+.+++..-+.++
T Consensus 167 aR~laa~g~~a~Aesafe~a~~~--ypg~~ar~~Y~e~La~qgr~~ea~aq~~~v 219 (251)
T COG4700 167 ARTLAAQGKYADAESAFEVAISY--YPGPQARIYYAEMLAKQGRLREANAQYVAV 219 (251)
T ss_pred HHHHHhcCCchhHHHHHHHHHHh--CCCHHHHHHHHHHHHHhcchhHHHHHHHHH
Confidence 78888888999899988888875 455444444445566777766665544444
|
|
| >KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=95.23 E-value=4.4 Score=41.80 Aligned_cols=178 Identities=11% Similarity=0.031 Sum_probs=112.6
Q ss_pred CChhhHHHH-HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHcCCCCcHHHHH
Q 036072 346 PNLTTYTVL-LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEG--LLKIGKRSDAIKLFEVMKAKGPSPNVRSYT 422 (631)
Q Consensus 346 p~~~~y~~L-i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~--~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~ 422 (631)
|.-.+|-.+ ..++.-.|++++|.++--...+.. ....+...+++ +.-.++.+.|...|++.+.. .|+...-.
T Consensus 166 pac~~a~~lka~cl~~~~~~~~a~~ea~~ilkld---~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~l--dpdh~~sk 240 (486)
T KOG0550|consen 166 PACFKAKLLKAECLAFLGDYDEAQSEAIDILKLD---ATNAEALYVRGLCLYYNDNADKAINHFQQALRL--DPDHQKSK 240 (486)
T ss_pred chhhHHHHhhhhhhhhcccchhHHHHHHHHHhcc---cchhHHHHhcccccccccchHHHHHHHhhhhcc--ChhhhhHH
Confidence 333445444 356667788888888776666542 12233334433 33467788888888887664 44433322
Q ss_pred HHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 036072 423 IMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEER---GCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGF 499 (631)
Q Consensus 423 ~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 499 (631)
++-...- .-..+..=.+-..+.|.+..|.+.+.+.... .+.++...|.....+..+.|+.++|+.-.++..+..
T Consensus 241 ~~~~~~k--~le~~k~~gN~~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD- 317 (486)
T KOG0550|consen 241 SASMMPK--KLEVKKERGNDAFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKID- 317 (486)
T ss_pred hHhhhHH--HHHHHHhhhhhHhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcC-
Confidence 2211110 1112333345567889999999999998754 456667778888888899999999999988887642
Q ss_pred CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036072 500 KPT-IHTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532 (631)
Q Consensus 500 ~p~-~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~ 532 (631)
+. +..|..-..++...++|++|.+-|+...+.
T Consensus 318 -~syikall~ra~c~l~le~~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 318 -SSYIKALLRRANCHLALEKWEEAVEDYEKAMQL 350 (486)
T ss_pred -HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 11 222333345566678899999999888764
|
|
| >COG3898 Uncharacterized membrane-bound protein [Function unknown] | Back alignment and domain information |
|---|
Probab=95.22 E-value=4.2 Score=41.58 Aligned_cols=262 Identities=15% Similarity=0.069 Sum_probs=167.9
Q ss_pred CCCHHHHHHHHHHH--HhcCChhHHHHHHHHHHHCCCCCHHHH----HHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHH
Q 036072 242 AHNSRTYNSMMSIL--GRARQFETMVSMLEEMGEKGLLSMETF----KIAMNAFAAAKERKKAVAIFELMNKYKFKAGVD 315 (631)
Q Consensus 242 ~p~~~~y~~li~~~--~~~g~~~~A~~l~~~m~~~g~~~~~~~----~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~ 315 (631)
.-|....-.++.+- .-.|+++.|.+-|+.|.. ++++- ..|.-..-+.|..+.|.+.-+..-..- +.-..
T Consensus 115 ssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~----dPEtRllGLRgLyleAqr~GareaAr~yAe~Aa~~A-p~l~W 189 (531)
T COG3898 115 SSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLD----DPETRLLGLRGLYLEAQRLGAREAARHYAERAAEKA-PQLPW 189 (531)
T ss_pred hccchHHHHHHHHHHHHhcCchHHHHHHHHHHhc----ChHHHHHhHHHHHHHHHhcccHHHHHHHHHHHHhhc-cCCch
Confidence 33445444455443 347999999999999975 33433 333333456789999998888877653 33456
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHhcc--cCCChh--hHHHHHHHHHh---cCCHHHHHHHHHHHHHcCCCCCHHHH-H
Q 036072 316 TINCLLENLGRSKLPKEAQLLFDKLKHR--FTPNLT--TYTVLLGGWCR---VKNLMEAGRVWNEMIDKGFKPDVVAH-N 387 (631)
Q Consensus 316 ~~~~Ll~~~~~~g~~~~A~~l~~~m~~~--~~p~~~--~y~~Li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~ty-~ 387 (631)
.+...+...+..|+++.|+++++.-+.. +.++.. .-..|+.+-+. .-+...|...-.+..+ +.||..-- .
T Consensus 190 A~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav 267 (531)
T COG3898 190 AARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMSLLDADPASARDDALEANK--LAPDLVPAAV 267 (531)
T ss_pred HHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHhh--cCCccchHHH
Confidence 7788999999999999999999987643 444443 22333333221 1244455554444433 56664432 2
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCC
Q 036072 388 IMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEER-GCPP 466 (631)
Q Consensus 388 ~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p 466 (631)
.-..++.+.|++.++-.+++.+-+....|++.. +-.+.+.|+ .+..-++..... .++|
T Consensus 268 ~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~-------------------lY~~ar~gd--ta~dRlkRa~~L~slk~ 326 (531)
T COG3898 268 VAARALFRDGNLRKGSKILETAWKAEPHPDIAL-------------------LYVRARSGD--TALDRLKRAKKLESLKP 326 (531)
T ss_pred HHHHHHHhccchhhhhhHHHHHHhcCCChHHHH-------------------HHHHhcCCC--cHHHHHHHHHHHHhcCc
Confidence 344788999999999999999988766666432 111223343 233333332211 2333
Q ss_pred -CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcC
Q 036072 467 -DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ-TGNYEMGRKVWDEMIRRG 533 (631)
Q Consensus 467 -~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~-~g~~~~A~~~~~~m~~~g 533 (631)
+......+..+-...|++..|..--+..... .|....|-.|.+.-.- .|+-.++...+.+..+..
T Consensus 327 nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~--~pres~~lLlAdIeeAetGDqg~vR~wlAqav~AP 393 (531)
T COG3898 327 NNAESSLAVAEAALDAGEFSAARAKAEAAARE--APRESAYLLLADIEEAETGDQGKVRQWLAQAVKAP 393 (531)
T ss_pred cchHHHHHHHHHHHhccchHHHHHHHHHHhhh--CchhhHHHHHHHHHhhccCchHHHHHHHHHHhcCC
Confidence 4456666777778889998887776666553 6888888777776554 599999999988887653
|
|
| >KOG2041 consensus WD40 repeat protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=95.17 E-value=6.3 Score=43.27 Aligned_cols=228 Identities=13% Similarity=0.093 Sum_probs=118.1
Q ss_pred CcCHHHHHHHHHHHHcCCChHHHHHHHHHHhc--ccCC--------ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC
Q 036072 311 KAGVDTINCLLENLGRSKLPKEAQLLFDKLKH--RFTP--------NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFK 380 (631)
Q Consensus 311 ~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~--~~~p--------~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~ 380 (631)
.|.+..|..|.......-.++.|+..|-+..+ +++. +...-.+=|. +--|++++|+++|-+|-.+
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeaek~yld~drr--- 763 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAEKLYLDADRR--- 763 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhhhhhhccchh---
Confidence 45666666666655555555555555554432 1110 0000111111 2236777777777666554
Q ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcH----HHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHH
Q 036072 381 PDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV----RSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLL 456 (631)
Q Consensus 381 p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~----~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 456 (631)
...|..+.+.|++-.+.++++. .|-..|. ..++.+=..+. +-..|......|.+.|+.+.-.+.+
T Consensus 764 ------DLAielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa--~~~~We~A~~yY~~~~~~e~~~ecl 832 (1189)
T KOG2041|consen 764 ------DLAIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFA--EMMEWEEAAKYYSYCGDTENQIECL 832 (1189)
T ss_pred ------hhhHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHH--HHHHHHHHHHHHHhccchHhHHHHH
Confidence 2345556666666665555532 1111111 11222211111 2234455555555555554433332
Q ss_pred HHHHH--------cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 036072 457 KEMEE--------RGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDE 528 (631)
Q Consensus 457 ~~m~~--------~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~ 528 (631)
-.+.. ..++-+....-.+..++...|.-++|.+.|-+-. .| .+.+..|...++|.+|.++-+.
T Consensus 833 y~le~f~~LE~la~~Lpe~s~llp~~a~mf~svGMC~qAV~a~Lr~s----~p-----kaAv~tCv~LnQW~~avelaq~ 903 (1189)
T KOG2041|consen 833 YRLELFGELEVLARTLPEDSELLPVMADMFTSVGMCDQAVEAYLRRS----LP-----KAAVHTCVELNQWGEAVELAQR 903 (1189)
T ss_pred HHHHhhhhHHHHHHhcCcccchHHHHHHHHHhhchHHHHHHHHHhcc----Cc-----HHHHHHHHHHHHHHHHHHHHHh
Confidence 22211 1244466667778888889999888888775432 12 2446677888888888887664
Q ss_pred HHHcCCCCCHHHH--------------HHHHHHHHHcCCHHHHHHHHHHHHHC
Q 036072 529 MIRRGCCPDDNSY--------------TVLIGGLISQDRSGEAYKYLEEMLEK 567 (631)
Q Consensus 529 m~~~g~~p~~~t~--------------~~li~~~~~~g~~~~A~~ll~~m~~~ 567 (631)
..-. ...+. ---|..+.++|+.-+|.+++.+|.+.
T Consensus 904 ~~l~----qv~tliak~aaqll~~~~~~eaIe~~Rka~~~~daarll~qmae~ 952 (1189)
T KOG2041|consen 904 FQLP----QVQTLIAKQAAQLLADANHMEAIEKDRKAGRHLDAARLLSQMAER 952 (1189)
T ss_pred ccch----hHHHHHHHHHHHHHhhcchHHHHHHhhhcccchhHHHHHHHHhHH
Confidence 4321 11111 11244566778877788888888643
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=95.14 E-value=3.8 Score=42.43 Aligned_cols=32 Identities=9% Similarity=0.090 Sum_probs=25.4
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 036072 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS 497 (631)
Q Consensus 466 p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 497 (631)
.+-..+.+++.++.-.|+.++|.+.+++|.+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 35566777888888888888888888888876
|
|
| >PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase | Back alignment and domain information |
|---|
Probab=95.12 E-value=0.47 Score=41.09 Aligned_cols=57 Identities=9% Similarity=0.004 Sum_probs=47.9
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcCC
Q 036072 532 RGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK-GMKAPVLDYNKFAADLSRAGR 588 (631)
Q Consensus 532 ~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~-g~~p~~~~~~~li~~~~~~g~ 588 (631)
....|+..+..+++.+|+..|++..|+++++...+. +++.+...|..|+.-....-+
T Consensus 46 spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W~~v~s~ 103 (126)
T PF12921_consen 46 SPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEWAYVLSS 103 (126)
T ss_pred CCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHhcC
Confidence 456789999999999999999999999999998764 788888899888877655544
|
The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria []. |
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=95.05 E-value=0.073 Score=41.66 Aligned_cols=60 Identities=22% Similarity=0.365 Sum_probs=25.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc----CC-CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 036072 505 TYNMIMKSYFQTGNYEMGRKVWDEMIRR----GC-CPD-DNSYTVLIGGLISQDRSGEAYKYLEEM 564 (631)
Q Consensus 505 t~~~Li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~-~~t~~~li~~~~~~g~~~~A~~ll~~m 564 (631)
+|+.+..+|...|++++|+..|++..+. |- .|+ ..++..+...|...|++++|++++++.
T Consensus 7 ~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~a 72 (78)
T PF13424_consen 7 AYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKA 72 (78)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 3444444444555555555544444321 10 011 233444444444444444444444443
|
... |
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=95.03 E-value=0.15 Score=39.22 Aligned_cols=57 Identities=14% Similarity=0.068 Sum_probs=43.4
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCC
Q 036072 253 SILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYK 309 (631)
Q Consensus 253 ~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g 309 (631)
..|.+.++++.|+++++.+...++.+...+.....++...|++++|.+.|+...+.+
T Consensus 3 ~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~ 59 (73)
T PF13371_consen 3 QIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELS 59 (73)
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHC
Confidence 456777788888888888877777777777777777778888888888877777653
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=95.02 E-value=2.5 Score=45.85 Aligned_cols=202 Identities=18% Similarity=0.150 Sum_probs=129.1
Q ss_pred CCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCCC-----HHHHHHHHHHHHh----cC
Q 036072 413 GPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEER-GCPPD-----GLTYNALIKLMKI----QK 482 (631)
Q Consensus 413 g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~-----~~t~~~li~~~~~----~g 482 (631)
|+.--..+++.+|+.+ +..+..++...+=.|+-+.+++.+.+-.+. ++.-. .-.|..++..++. ..
T Consensus 172 gv~~G~G~f~L~lSlL----Pp~~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~ 247 (468)
T PF10300_consen 172 GVYFGFGLFNLVLSLL----PPKVLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDV 247 (468)
T ss_pred hHHHHHHHHHHHHHhC----CHHHHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCC
Confidence 3333344444444432 345667788888889999999999887654 22211 1234555554443 45
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHHcCCHHHHH
Q 036072 483 MPDEAVRIYKEMVRSGFKPTIHTYNMI-MKSYFQTGNYEMGRKVWDEMIRRG---CCPDDNSYTVLIGGLISQDRSGEAY 558 (631)
Q Consensus 483 ~~~~A~~l~~~m~~~g~~p~~~t~~~L-i~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~t~~~li~~~~~~g~~~~A~ 558 (631)
..+.|.+++..+.+. -|+...|... .+.+...|++++|.+.|++..... .+.....+--+...+.-.+++++|.
T Consensus 248 ~~~~a~~lL~~~~~~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~ 325 (468)
T PF10300_consen 248 PLEEAEELLEEMLKR--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAA 325 (468)
T ss_pred CHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHH
Confidence 678899999999886 5666555433 455667999999999999766421 1112344555666778889999999
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHH-HhcCCH-------HHHHHHHHHHHh-----cCCC-chHHHHHHHHHhhhhh
Q 036072 559 KYLEEMLEKGMKAPVLDYNKFAADL-SRAGRS-------YVLDELAQKMRF-----SGKF-EVSNVLARWAETTKNR 621 (631)
Q Consensus 559 ~ll~~m~~~g~~p~~~~~~~li~~~-~~~g~~-------~~A~~l~~~m~~-----~g~~-~~~~~l~~~~~~~k~~ 621 (631)
+.|..+.+.. .-+..+|..+..+| ...|+. ++|.+++++.+. .|+. ++.....+..+..+.+
T Consensus 326 ~~f~~L~~~s-~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~l~~k~~gk~lp~E~Fv~RK~~~~~~~ 401 (468)
T PF10300_consen 326 EYFLRLLKES-KWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPKLKQKKAGKSLPLEKFVIRKAQKYEKQ 401 (468)
T ss_pred HHHHHHHhcc-ccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHHHHhhhccCCCChHHHHHHHHHHHHhc
Confidence 9999999864 33455555444433 566777 888899888754 3333 4455555555555544
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.97 E-value=1.8 Score=38.23 Aligned_cols=42 Identities=10% Similarity=0.145 Sum_probs=19.5
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHH
Q 036072 250 SMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAA 291 (631)
Q Consensus 250 ~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~ 291 (631)
.+|..+...+....+..+++.+...+..++..++.++..|++
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~li~ly~~ 53 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNSENPALQTKLIELYAK 53 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCccchhHHHHHHHHHHH
Confidence 344444444444455555554444443344444445544444
|
|
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.91 E-value=10 Score=44.37 Aligned_cols=106 Identities=9% Similarity=-0.008 Sum_probs=58.4
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 036072 441 TGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE 520 (631)
Q Consensus 441 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~ 520 (631)
.-+.....+++|.-.|+..-+ ..-.+.+|-.+|++.+|+.+..++....-. -..+-..|+.-+...++.-
T Consensus 947 ~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~~de-~~~~a~~L~s~L~e~~kh~ 1016 (1265)
T KOG1920|consen 947 DHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEGKDE-LVILAEELVSRLVEQRKHY 1016 (1265)
T ss_pred HHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCCHHH-HHHHHHHHHHHHHHcccch
Confidence 334444555555555544321 112355666778888888777776532100 1112245666777778877
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 036072 521 MGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564 (631)
Q Consensus 521 ~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m 564 (631)
+|-++..+.... ..-.+..|++...+++|..+....
T Consensus 1017 eAa~il~e~~sd--------~~~av~ll~ka~~~~eAlrva~~~ 1052 (1265)
T KOG1920|consen 1017 EAAKILLEYLSD--------PEEAVALLCKAKEWEEALRVASKA 1052 (1265)
T ss_pred hHHHHHHHHhcC--------HHHHHHHHhhHhHHHHHHHHHHhc
Confidence 777777766543 122344456666677776655443
|
|
| >PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus | Back alignment and domain information |
|---|
Probab=94.90 E-value=2.2 Score=36.80 Aligned_cols=68 Identities=16% Similarity=0.193 Sum_probs=44.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 036072 467 DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC 535 (631)
Q Consensus 467 ~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~ 535 (631)
+.......+..+...|.-++-.+++.++.+.+ .++....-.+..+|.+.|+..++.+++.+..++|++
T Consensus 85 ~se~vD~ALd~lv~~~kkDqLdki~~~l~kn~-~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 85 LSEYVDLALDILVKQGKKDQLDKIYNELKKNE-EINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHhhcc-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 34455666777778888888888888877533 667777778888888888888888888888887764
|
Their exact function has not, as yet, been determined. ; PDB: 1WY6_A. |
| >KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription] | Back alignment and domain information |
|---|
Probab=94.86 E-value=11 Score=44.27 Aligned_cols=90 Identities=22% Similarity=0.316 Sum_probs=59.2
Q ss_pred CCCHHHHHHHH----HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHH
Q 036072 465 PPDGLTYNALI----KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNS 540 (631)
Q Consensus 465 ~p~~~t~~~li----~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t 540 (631)
.|+...+..+. ..+.....+++|.-.|+..-+ ..-.+.+|..+|+|.+|+.+..++... -|...
T Consensus 932 ~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dWr~~l~~a~ql~~~---~de~~ 999 (1265)
T KOG1920|consen 932 KPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDWREALSLAAQLSEG---KDELV 999 (1265)
T ss_pred ccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccHHHHHHHHHhhcCC---HHHHH
Confidence 34554444444 444566777777777665432 234567888889999988888877542 13222
Q ss_pred --HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 541 --YTVLIGGLISQDRSGEAYKYLEEMLE 566 (631)
Q Consensus 541 --~~~li~~~~~~g~~~~A~~ll~~m~~ 566 (631)
-..|+.-+...++.-+|-+++.+...
T Consensus 1000 ~~a~~L~s~L~e~~kh~eAa~il~e~~s 1027 (1265)
T KOG1920|consen 1000 ILAEELVSRLVEQRKHYEAAKILLEYLS 1027 (1265)
T ss_pred HHHHHHHHHHHHcccchhHHHHHHHHhc
Confidence 25677788889999999888887765
|
|
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=94.74 E-value=3 Score=46.69 Aligned_cols=74 Identities=12% Similarity=0.186 Sum_probs=48.6
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH----HHHHCCCCCCHHHHHHHHHH
Q 036072 507 NMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLE----EMLEKGMKAPVLDYNKFAAD 582 (631)
Q Consensus 507 ~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~----~m~~~g~~p~~~~~~~li~~ 582 (631)
--++..++...+.+.+..+.+..-+. ++..|..++..+++.+..+...+... .......-|.. .++..
T Consensus 709 ~dl~~~~~q~~d~E~~it~~~~~g~~----~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ippl----~VL~~ 780 (933)
T KOG2114|consen 709 QDLMLYFQQISDPETVITLCERLGKE----DPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPPL----HVLQI 780 (933)
T ss_pred HHHHHHHHHhhChHHHHHHHHHhCcc----ChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCHH----HHHHH
Confidence 34667777888888888877766554 88899999999998886655554444 44444444433 34455
Q ss_pred HHhcCC
Q 036072 583 LSRAGR 588 (631)
Q Consensus 583 ~~~~g~ 588 (631)
+++.+.
T Consensus 781 Lakn~~ 786 (933)
T KOG2114|consen 781 LAKNGT 786 (933)
T ss_pred HhcCCc
Confidence 555554
|
|
| >PF13281 DUF4071: Domain of unknown function (DUF4071) | Back alignment and domain information |
|---|
Probab=94.62 E-value=6.5 Score=40.76 Aligned_cols=176 Identities=14% Similarity=0.067 Sum_probs=109.3
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHh---cCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036072 437 TCLITGFGNRRRMDIVYDLLKEMEERG---CPPDGLTYNALIKLMKI---QKMPDEAVRIYKEMVRSGFKPTIHTYNMIM 510 (631)
Q Consensus 437 ~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~~~t~~~li~~~~~---~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li 510 (631)
-.++-+|....+++...++++.|...- +.-....--...-++.+ .|+.++|++++..+....-.++..+|..+.
T Consensus 145 ~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~G 224 (374)
T PF13281_consen 145 INLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLG 224 (374)
T ss_pred HHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHH
Confidence 345667888899999999999998651 11111211223335556 899999999999977766688899998888
Q ss_pred HHHHHc---------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-H---HHHHHHH---HH-HHHCC---CC
Q 036072 511 KSYFQT---------GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDR-S---GEAYKYL---EE-MLEKG---MK 570 (631)
Q Consensus 511 ~~~~~~---------g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~-~---~~A~~ll---~~-m~~~g---~~ 570 (631)
..|-.. ...++|...|.+.-+. .||..+=-.+...+...|. . .+..++- .. +.++| -.
T Consensus 225 RIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~--~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 225 RIYKDLFLESNFTDRESLDKAIEWYRKGFEI--EPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHHcCccchHHHHHHHHHHHHHHcC--CccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 877531 1356777777766543 2333221112222222332 1 2333332 22 22333 24
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CCchHHHHHHH
Q 036072 571 APVLDYNKFAADLSRAGRSYVLDELAQKMRFSG--KFEVSNVLARW 614 (631)
Q Consensus 571 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--~~~~~~~l~~~ 614 (631)
.+...+.+++.++.-.|+.+.|.+.+++|.... .+.+.+.+...
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~W~l~St~~ni 348 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPAWELESTLENI 348 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcchhHHHHHHHH
Confidence 567778999999999999999999999987643 23344444433
|
|
| >PF13371 TPR_9: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=94.59 E-value=0.21 Score=38.34 Aligned_cols=54 Identities=7% Similarity=-0.076 Sum_probs=27.3
Q ss_pred HHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036072 323 NLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMID 376 (631)
Q Consensus 323 ~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~ 376 (631)
.|.+.+++++|.++++.+..-.+.+...|.....++.+.|++++|.+.|+...+
T Consensus 4 ~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~ 57 (73)
T PF13371_consen 4 IYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALE 57 (73)
T ss_pred HHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 344445555555555555444444444555555555555555555555555554
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=94.54 E-value=0.62 Score=45.28 Aligned_cols=37 Identities=22% Similarity=0.337 Sum_probs=32.0
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 036072 448 RMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484 (631)
Q Consensus 448 ~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 484 (631)
+-+-+++++++|...|+.||..+-..|++++.+.+-.
T Consensus 138 QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 138 QQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hhhHHHHHHHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 3456789999999999999999999999999777654
|
|
| >KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.54 E-value=3.3 Score=44.92 Aligned_cols=216 Identities=16% Similarity=0.146 Sum_probs=118.4
Q ss_pred HHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc-HHHHHHHHHH
Q 036072 351 YTVLLGGWCRVKN--LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN-VRSYTIMIWK 427 (631)
Q Consensus 351 y~~Li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~-~~~~~~li~~ 427 (631)
++..=++|.+..+ +-+...-+++|+++|-.|+... +...|+-.|++.+|.++|.+- |...- ...|+-|
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iL---lA~~~Ay~gKF~EAAklFk~~---G~enRAlEmyTDl--- 671 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLL---LADVFAYQGKFHEAAKLFKRS---GHENRALEMYTDL--- 671 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHH---HHHHHHhhhhHHHHHHHHHHc---CchhhHHHHHHHH---
Confidence 3334444544443 3344455677778887787653 334555667777777777542 22210 0111100
Q ss_pred HhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHH--cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHH------HHHCCC
Q 036072 428 FCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEE--RGCPPDGLTYNALIKLMKIQKMPDEAVRIYKE------MVRSGF 499 (631)
Q Consensus 428 ~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~--~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~------m~~~g~ 499 (631)
. .--+.+-|...|..++-..+.++-.+ ..++-. .+....+...|+.++|..+.-+ +.+-+-
T Consensus 672 ------R-MFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~keP----kaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~r 740 (1081)
T KOG1538|consen 672 ------R-MFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEP----KAAAEMLISAGEHVKAIEICGDHGWVDMLIDIAR 740 (1081)
T ss_pred ------H-HHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCc----HHHHHHhhcccchhhhhhhhhcccHHHHHHHHHh
Confidence 0 00122333344444444443333211 112111 1233445567888877765421 222222
Q ss_pred C---CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 036072 500 K---PTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576 (631)
Q Consensus 500 ~---p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~ 576 (631)
+ .+..+...+..-+.+...+..|.++|..|-+. ..++......+++.+|..+-+...+. .|| .|
T Consensus 741 kld~~ere~l~~~a~ylk~l~~~gLAaeIF~k~gD~---------ksiVqlHve~~~W~eAFalAe~hPe~--~~d--Vy 807 (1081)
T KOG1538|consen 741 KLDKAEREPLLLCATYLKKLDSPGLAAEIFLKMGDL---------KSLVQLHVETQRWDEAFALAEKHPEF--KDD--VY 807 (1081)
T ss_pred hcchhhhhHHHHHHHHHhhccccchHHHHHHHhccH---------HHHhhheeecccchHhHhhhhhCccc--ccc--cc
Confidence 2 23445555555555667788888888887532 34667778899999999888766542 343 45
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHH
Q 036072 577 NKFAADLSRAGRSYVLDELAQKM 599 (631)
Q Consensus 577 ~~li~~~~~~g~~~~A~~l~~~m 599 (631)
.-...-++...++++|.+.|.+.
T Consensus 808 ~pyaqwLAE~DrFeEAqkAfhkA 830 (1081)
T KOG1538|consen 808 MPYAQWLAENDRFEEAQKAFHKA 830 (1081)
T ss_pred chHHHHhhhhhhHHHHHHHHHHh
Confidence 56677788888999999988765
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=94.35 E-value=0.88 Score=48.63 Aligned_cols=132 Identities=14% Similarity=0.045 Sum_probs=75.0
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHH
Q 036072 256 GRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQL 335 (631)
Q Consensus 256 ~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~ 335 (631)
.-.++++.+.++.+.-.-..-.+....+.++..+-+.|..+.|+++-..-. .-.+...+.|+++.|.+
T Consensus 272 v~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~------------~rFeLAl~lg~L~~A~~ 339 (443)
T PF04053_consen 272 VLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPD------------HRFELALQLGNLDIALE 339 (443)
T ss_dssp HHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HH------------HHHHHHHHCT-HHHHHH
T ss_pred HHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChH------------HHhHHHHhcCCHHHHHH
Confidence 345677776665541111111345567777777777788777777643221 12344556777777766
Q ss_pred HHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 036072 336 LFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413 (631)
Q Consensus 336 l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g 413 (631)
+.+++. +...|..|.....+.|+++-|++.|.+..+ |..|+-.|.-.|+.+...++.+.....|
T Consensus 340 ~a~~~~-----~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~ 403 (443)
T PF04053_consen 340 IAKELD-----DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG 403 (443)
T ss_dssp HCCCCS-----THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT
T ss_pred HHHhcC-----cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc
Confidence 654443 456777777777777777777777777654 5666667777777777666666665544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=94.33 E-value=6.4 Score=39.43 Aligned_cols=160 Identities=10% Similarity=0.052 Sum_probs=97.4
Q ss_pred HhcCChhHHHHHHHHHHHCC-CCCHH--------HHHHHHHHHHHcc-CHHHHHHHHHHHHhC--------CCCcC----
Q 036072 256 GRARQFETMVSMLEEMGEKG-LLSME--------TFKIAMNAFAAAK-ERKKAVAIFELMNKY--------KFKAG---- 313 (631)
Q Consensus 256 ~~~g~~~~A~~l~~~m~~~g-~~~~~--------~~~~li~~~~~~g-~~~~A~~v~~~m~~~--------g~~~~---- 313 (631)
.+.|+++.|..++.+..... ..++. .|+.-... ...+ +++.|..++++..+. ...++
T Consensus 4 ~~~~~~~~A~~~~~K~~~~~~~~~~~~~~~La~~~yn~G~~l-~~~~~~~~~a~~wL~~a~~~l~~~~~~~~~~~~~~el 82 (278)
T PF08631_consen 4 WKQGDLDLAEHMYSKAKDLLNSLDPDMAEELARVCYNIGKSL-LSKKDKYEEAVKWLQRAYDILEKPGKMDKLSPDGSEL 82 (278)
T ss_pred hhhCCHHHHHHHHHHhhhHHhcCCcHHHHHHHHHHHHHHHHH-HHcCCChHHHHHHHHHHHHHHHhhhhccccCCcHHHH
Confidence 46789999999998887654 33332 23333333 3344 787777766655443 11222
Q ss_pred -HHHHHHHHHHHHcCCChH---HHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 036072 314 -VDTINCLLENLGRSKLPK---EAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIM 389 (631)
Q Consensus 314 -~~~~~~Ll~~~~~~g~~~---~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~l 389 (631)
..++..++.+|...+..+ +|..+++.+....+-...+|-.-+..+.+.++.+++.+++..|... +.-....+..+
T Consensus 83 r~~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~-~~~~e~~~~~~ 161 (278)
T PF08631_consen 83 RLSILRLLANAYLEWDTYESVEKALNALRLLESEYGNKPEVFLLKLEILLKSFDEEEYEEILMRMIRS-VDHSESNFDSI 161 (278)
T ss_pred HHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCCCcHHHHHHHHHHhccCChhHHHHHHHHHHHh-cccccchHHHH
Confidence 345667778888777655 4555666665555444667767788888889999999999999986 22123345554
Q ss_pred HHHH---HHcCCHHHHHHHHHHHHHcCCCCcH
Q 036072 390 LEGL---LKIGKRSDAIKLFEVMKAKGPSPNV 418 (631)
Q Consensus 390 i~~~---~~~g~~~~A~~ll~~m~~~g~~p~~ 418 (631)
+..+ ... ....|...+..+....+.|..
T Consensus 162 l~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~ 192 (278)
T PF08631_consen 162 LHHIKQLAEK-SPELAAFCLDYLLLNRFKSSE 192 (278)
T ss_pred HHHHHHHHhh-CcHHHHHHHHHHHHHHhCCCh
Confidence 5444 332 334566666666555455444
|
It is also involved in sporulation []. |
| >smart00299 CLH Clathrin heavy chain repeat homology | Back alignment and domain information |
|---|
Probab=94.32 E-value=2.8 Score=36.94 Aligned_cols=124 Identities=13% Similarity=0.101 Sum_probs=74.2
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 036072 438 CLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517 (631)
Q Consensus 438 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g 517 (631)
.++..+...+.......+++.+...+. .+...++.++..|++.+. .+.++.+.. ..+......+++.|.+.+
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~~-~~~~~~~~li~ly~~~~~-~~ll~~l~~------~~~~yd~~~~~~~c~~~~ 83 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLNS-ENPALQTKLIELYAKYDP-QKEIERLDN------KSNHYDIEKVGKLCEKAK 83 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccCc-cchhHHHHHHHHHHHHCH-HHHHHHHHh------ccccCCHHHHHHHHHHcC
Confidence 345556666778888888888877763 567788888888876643 444444442 112223344677777777
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036072 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQ-DRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584 (631)
Q Consensus 518 ~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~-g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~ 584 (631)
.++++..++.++.. |...+..+... ++++.|.+++.+- .+...|..++..+.
T Consensus 84 l~~~~~~l~~k~~~---------~~~Al~~~l~~~~d~~~a~~~~~~~------~~~~lw~~~~~~~l 136 (140)
T smart00299 84 LYEEAVELYKKDGN---------FKDAIVTLIEHLGNYEKAIEYFVKQ------NNPELWAEVLKALL 136 (140)
T ss_pred cHHHHHHHHHhhcC---------HHHHHHHHHHcccCHHHHHHHHHhC------CCHHHHHHHHHHHH
Confidence 77777777776532 12223333333 6777777766641 24456666665554
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=94.30 E-value=3.1 Score=37.51 Aligned_cols=86 Identities=10% Similarity=-0.034 Sum_probs=42.9
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 036072 479 KIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAY 558 (631)
Q Consensus 479 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~ 558 (631)
...|++++|..+|.-+.-.+. -+..-+..|..+|-..+++++|...|......+.. |+..+-....+|...|+.+.|.
T Consensus 48 y~~Gk~~eA~~~F~~L~~~d~-~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~-dp~p~f~agqC~l~l~~~~~A~ 125 (165)
T PRK15331 48 YNQGRLDEAETFFRFLCIYDF-YNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKN-DYRPVFFTGQCQLLMRKAAKAR 125 (165)
T ss_pred HHCCCHHHHHHHHHHHHHhCc-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccC-CCCccchHHHHHHHhCCHHHHH
Confidence 355556666666555554331 23334445555555555566665555544433221 3333333445555555555555
Q ss_pred HHHHHHHH
Q 036072 559 KYLEEMLE 566 (631)
Q Consensus 559 ~ll~~m~~ 566 (631)
..|...++
T Consensus 126 ~~f~~a~~ 133 (165)
T PRK15331 126 QCFELVNE 133 (165)
T ss_pred HHHHHHHh
Confidence 55555554
|
|
| >PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H | Back alignment and domain information |
|---|
Probab=94.28 E-value=0.12 Score=40.31 Aligned_cols=63 Identities=24% Similarity=0.180 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC--CCC---CC-HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036072 538 DNSYTVLIGGLISQDRSGEAYKYLEEMLEK--GMK---AP-VLDYNKFAADLSRAGRSYVLDELAQKMR 600 (631)
Q Consensus 538 ~~t~~~li~~~~~~g~~~~A~~ll~~m~~~--g~~---p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~ 600 (631)
..+|+.+...|...|++++|++.|++.++. ... |+ ..++..+..++...|++++|++++++..
T Consensus 5 a~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al 73 (78)
T PF13424_consen 5 ANAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKAL 73 (78)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 357888999999999999999999998754 122 22 4568899999999999999999998764
|
... |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.19 E-value=5.8 Score=38.45 Aligned_cols=80 Identities=16% Similarity=-0.008 Sum_probs=51.0
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036072 314 VDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPN---LTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIML 390 (631)
Q Consensus 314 ~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~---~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li 390 (631)
...|+..+.. .+.|++++|.+.|+.+..+.+-+ ..+--.++.++.+.+++++|+..+++....-..-....|..-|
T Consensus 35 ~~LY~~g~~~-L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 35 SELYNEGLTE-LQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHHH-HhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 3444444433 46788888888888887654433 3455666777788888888888888877653332333455555
Q ss_pred HHHH
Q 036072 391 EGLL 394 (631)
Q Consensus 391 ~~~~ 394 (631)
.+++
T Consensus 114 kgLs 117 (254)
T COG4105 114 KGLS 117 (254)
T ss_pred HHHH
Confidence 5555
|
|
| >PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans | Back alignment and domain information |
|---|
Probab=94.18 E-value=3.5 Score=44.63 Aligned_cols=169 Identities=14% Similarity=0.167 Sum_probs=110.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHH
Q 036072 386 HNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGN----RRRMDIVYDLLKEMEE 461 (631)
Q Consensus 386 y~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~ 461 (631)
+..++....-.|+-+.+++++.+..+.+-.-.+..--.| -.|...+..++. ....+.|.+++..+.+
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~L---------L~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~ 261 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVL---------LWYHLVVPSFLGIDGEDVPLEEAEELLEEMLK 261 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHH---------HHHHHHHHHHcCCcccCCCHHHHHHHHHHHHH
Confidence 445666667778999999998876654221122211111 234444443333 4678999999999988
Q ss_pred cCCCCCHHHHHHH-HHHHHhcCChhHHHHHHHHHHHCC--C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC
Q 036072 462 RGCPPDGLTYNAL-IKLMKIQKMPDEAVRIYKEMVRSG--F-KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD 537 (631)
Q Consensus 462 ~g~~p~~~t~~~l-i~~~~~~g~~~~A~~l~~~m~~~g--~-~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~ 537 (631)
+ -|+...|... -+.+...|++++|++.|++..... . ......+--+.-++.-..+|++|.+.|..+.+..-. +
T Consensus 262 ~--yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~W-S 338 (468)
T PF10300_consen 262 R--YPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKW-S 338 (468)
T ss_pred h--CCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhcccc-H
Confidence 6 4666666543 345678899999999999766421 1 123345566777888999999999999999975322 4
Q ss_pred HHHHHHHHHHHH-HcCCH-------HHHHHHHHHHHH
Q 036072 538 DNSYTVLIGGLI-SQDRS-------GEAYKYLEEMLE 566 (631)
Q Consensus 538 ~~t~~~li~~~~-~~g~~-------~~A~~ll~~m~~ 566 (631)
..+|..+..+|. ..|+. ++|.++|.+...
T Consensus 339 ka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 339 KAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 445554444433 56777 888888887653
|
In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus. |
| >COG4105 ComL DNA uptake lipoprotein [General function prediction only] | Back alignment and domain information |
|---|
Probab=94.00 E-value=6.4 Score=38.19 Aligned_cols=185 Identities=16% Similarity=0.131 Sum_probs=108.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC---CHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLL---SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLL 321 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~---~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll 321 (631)
...|+.-+..+ +.|++++|.+.|+.+..+.+. ...+.-.++.++-+.++++.|+..+++..+.-..-....|..-|
T Consensus 35 ~~LY~~g~~~L-~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~dY~~Yl 113 (254)
T COG4105 35 SELYNEGLTEL-QKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNADYAYYL 113 (254)
T ss_pred HHHHHHHHHHH-hcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChhHHHHH
Confidence 44566555544 679999999999999988773 56688888899999999999999999998763222333344444
Q ss_pred HHHHc-------CCChHHHHHHHHHHh---cccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH-HHHH
Q 036072 322 ENLGR-------SKLPKEAQLLFDKLK---HRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH-NIML 390 (631)
Q Consensus 322 ~~~~~-------~g~~~~A~~l~~~m~---~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty-~~li 390 (631)
.+++. ..|...+...|..+. .++|.+..+ .+|...+..+... ..-+ -.+.
T Consensus 114 kgLs~~~~i~~~~rDq~~~~~A~~~f~~~i~ryPnS~Ya--------------~dA~~~i~~~~d~-----LA~~Em~Ia 174 (254)
T COG4105 114 KGLSYFFQIDDVTRDQSAARAAFAAFKELVQRYPNSRYA--------------PDAKARIVKLNDA-----LAGHEMAIA 174 (254)
T ss_pred HHHHHhccCCccccCHHHHHHHHHHHHHHHHHCCCCcch--------------hhHHHHHHHHHHH-----HHHHHHHHH
Confidence 44432 234444444444443 333322211 1222222222111 0001 1345
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 036072 391 EGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEER 462 (631)
Q Consensus 391 ~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 462 (631)
+.|.+.|.+..|..-+++|.+. ..-+..+. ..+-.+..+|...|-.++|.+.-.-+...
T Consensus 175 ryY~kr~~~~AA~nR~~~v~e~-y~~t~~~~------------eaL~~l~eaY~~lgl~~~a~~~~~vl~~N 233 (254)
T COG4105 175 RYYLKRGAYVAAINRFEEVLEN-YPDTSAVR------------EALARLEEAYYALGLTDEAKKTAKVLGAN 233 (254)
T ss_pred HHHHHhcChHHHHHHHHHHHhc-cccccchH------------HHHHHHHHHHHHhCChHHHHHHHHHHHhc
Confidence 6788888888888888888876 22222222 23334556666667777766665555543
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.95 E-value=7.9 Score=39.07 Aligned_cols=134 Identities=14% Similarity=0.210 Sum_probs=78.1
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH--cC----CHHHHHHHHHHHHHcCC---CCcHHHHHHHHHHHhhcCHH
Q 036072 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLK--IG----KRSDAIKLFEVMKAKGP---SPNVRSYTIMIWKFCKQNAA 434 (631)
Q Consensus 364 ~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~--~g----~~~~A~~ll~~m~~~g~---~p~~~~~~~li~~~~~~~~~ 434 (631)
+++...+++.|.+.|+.-+..+|-+..-.... .. ...+|..+|+.|++... .++...+..++..-.. +..
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~~~~-~~e 156 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAMTSE-DVE 156 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhcccc-cHH
Confidence 45667788889998988888777653333332 22 35688889999988642 2444444444322111 000
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHhcCC--hhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036072 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGL--TYNALIKLMKIQKM--PDEAVRIYKEMVRSGFKPTIHTYNMIM 510 (631)
Q Consensus 435 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~t~~~Li 510 (631)
.-.+.++.+|+.+.+.|...+.. ....++..+..... ..++.++++.+.+.|+++....|..+.
T Consensus 157 ------------~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lG 224 (297)
T PF13170_consen 157 ------------ELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLG 224 (297)
T ss_pred ------------HHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHH
Confidence 02456677777777777655432 33333333222222 346778888888888887776665554
|
|
| >KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=93.80 E-value=0.77 Score=44.63 Aligned_cols=88 Identities=16% Similarity=0.203 Sum_probs=49.2
Q ss_pred CHHHHHHHHHHHHh-----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC----------------CHHHHHHH
Q 036072 467 DGLTYNALIKLMKI-----QKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG----------------NYEMGRKV 525 (631)
Q Consensus 467 ~~~t~~~li~~~~~-----~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g----------------~~~~A~~~ 525 (631)
|...|...+..+.. .+.++-....++.|.+.|+.-|..+|+.|+..+-+.. +-+-++++
T Consensus 66 dK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~HYP~QQ~C~I~v 145 (406)
T KOG3941|consen 66 DKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFLHYPQQQNCAIKV 145 (406)
T ss_pred cHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHhhCchhhhHHHHH
Confidence 44444444444432 2344444445555555666666666655555432221 12346677
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 036072 526 WDEMIRRGCCPDDNSYTVLIGGLISQDRS 554 (631)
Q Consensus 526 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 554 (631)
+++|...|+.||..+-..|++++.+.+..
T Consensus 146 LeqME~hGVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 146 LEQMEWHGVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred HHHHHHcCCCCchHHHHHHHHHhcccccc
Confidence 77777777777777777777777665544
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.78 E-value=4.7 Score=38.65 Aligned_cols=212 Identities=15% Similarity=0.115 Sum_probs=111.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENL 324 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~ 324 (631)
...|.....+|-...+|++|...+.+..+..-.+...|+ ....++.|.-+.++|.+. .--+..|+.....|
T Consensus 31 as~yekAAvafRnAk~feKakdcLlkA~~~yEnnrslfh-------AAKayEqaamLake~~kl--sEvvdl~eKAs~lY 101 (308)
T KOG1585|consen 31 ASLYEKAAVAFRNAKKFEKAKDCLLKASKGYENNRSLFH-------AAKAYEQAAMLAKELSKL--SEVVDLYEKASELY 101 (308)
T ss_pred HHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHhcccHHH-------HHHHHHHHHHHHHHHHHh--HHHHHHHHHHHHHH
Confidence 456667777788888899888877776543222222221 122334444444444443 22234455666778
Q ss_pred HcCCChHHHHHHHHHHh---cccCCChh--hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 036072 325 GRSKLPKEAQLLFDKLK---HRFTPNLT--TYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399 (631)
Q Consensus 325 ~~~g~~~~A~~l~~~m~---~~~~p~~~--~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~ 399 (631)
..+|..+.|-..+++.- +...|+.. .|.--+...-..++...|.+++ ...-..+.+..++
T Consensus 102 ~E~GspdtAAmaleKAak~lenv~Pd~AlqlYqralavve~~dr~~ma~el~---------------gk~sr~lVrl~kf 166 (308)
T KOG1585|consen 102 VECGSPDTAAMALEKAAKALENVKPDDALQLYQRALAVVEEDDRDQMAFELY---------------GKCSRVLVRLEKF 166 (308)
T ss_pred HHhCCcchHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHhccchHHHHHHHH---------------HHhhhHhhhhHHh
Confidence 88888888777777643 33334322 2333333333333333333333 3333455555666
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHH
Q 036072 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERG---CPPDGLTYNALIK 476 (631)
Q Consensus 400 ~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g---~~p~~~t~~~li~ 476 (631)
++|-..+..-.. ..-...+|+. .-..|-+.|-.|....++..|.+.++.--+.+ -.-+..+...||.
T Consensus 167 ~Eaa~a~lKe~~--~~~~~~~y~~--------~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ 236 (308)
T KOG1585|consen 167 TEAATAFLKEGV--AADKCDAYNS--------QCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLT 236 (308)
T ss_pred hHHHHHHHHhhh--HHHHHhhccc--------HHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHH
Confidence 666554433211 0001111111 11224445556666678888888888754432 1224567777887
Q ss_pred HHHhcCChhHHHHHH
Q 036072 477 LMKIQKMPDEAVRIY 491 (631)
Q Consensus 477 ~~~~~g~~~~A~~l~ 491 (631)
+| ..|+.+++.+++
T Consensus 237 ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 237 AY-DEGDIEEIKKVL 250 (308)
T ss_pred Hh-ccCCHHHHHHHH
Confidence 77 667777766655
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.58 E-value=0.98 Score=46.36 Aligned_cols=96 Identities=18% Similarity=0.023 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 036072 314 VDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGL 393 (631)
Q Consensus 314 ~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~ 393 (631)
..+++.|.-+|.+.+++..|++..+....-.++|+....-=..+|...|+++.|+..|+.+.+. .|+..+-..-|..|
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~--~P~Nka~~~el~~l 334 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKL--EPSNKAARAELIKL 334 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHh--CCCcHHHHHHHHHH
Confidence 3445566667777777777777777766655667766666677777777777777777777763 55544444433333
Q ss_pred H-HcCC-HHHHHHHHHHHHH
Q 036072 394 L-KIGK-RSDAIKLFEVMKA 411 (631)
Q Consensus 394 ~-~~g~-~~~A~~ll~~m~~ 411 (631)
. +..+ .+...++|..|..
T Consensus 335 ~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 335 KQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 3 2222 3344566666654
|
|
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=93.37 E-value=9 Score=37.93 Aligned_cols=52 Identities=12% Similarity=-0.040 Sum_probs=29.5
Q ss_pred HcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036072 325 GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMID 376 (631)
Q Consensus 325 ~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~ 376 (631)
...|+..+|..+|.......+-+...--.|..+|...|+.+.|..++..+..
T Consensus 145 ~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~ 196 (304)
T COG3118 145 IEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPL 196 (304)
T ss_pred hhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcc
Confidence 3455566666666655544344445555556666666666666666665543
|
|
| >PF13170 DUF4003: Protein of unknown function (DUF4003) | Back alignment and domain information |
|---|
Probab=93.35 E-value=4 Score=41.19 Aligned_cols=153 Identities=13% Similarity=0.224 Sum_probs=95.4
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh--cC----ChhHHHHHHHHHHHCCC---CCCHHHHHHHHHHHHHcCC-
Q 036072 449 MDIVYDLLKEMEERGCPPDGLTYNALIKLMKI--QK----MPDEAVRIYKEMVRSGF---KPTIHTYNMIMKSYFQTGN- 518 (631)
Q Consensus 449 ~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~--~g----~~~~A~~l~~~m~~~g~---~p~~~t~~~Li~~~~~~g~- 518 (631)
+++...+++.|.+.|..-+..+|-+....... .. ...+|..+|+.|++... .++..++..|+.. ..++
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 56677888999999999888777664443333 22 34679999999998642 2445566666543 3333
Q ss_pred ---HHHHHHHHHHHHHcCCCCCHH--HHHHHHHHHHHcCC--HHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC---
Q 036072 519 ---YEMGRKVWDEMIRRGCCPDDN--SYTVLIGGLISQDR--SGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR--- 588 (631)
Q Consensus 519 ---~~~A~~~~~~m~~~g~~p~~~--t~~~li~~~~~~g~--~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~--- 588 (631)
.+.++.+|+.+.+.|+..+.. ....++..+..... ...+.++++.+.+.|+++....|..+.-...-.+.
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~lGlLall~~~~~~ 235 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTLGLLALLEDPEEK 235 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHHHHHHhcCCchHH
Confidence 466778888888877765432 33333333222222 45788999999999999887777655443333333
Q ss_pred -HHHHHHHHHHHHhcC
Q 036072 589 -SYVLDELAQKMRFSG 603 (631)
Q Consensus 589 -~~~A~~l~~~m~~~g 603 (631)
.+...++.+.+++..
T Consensus 236 ~~~~i~ev~~~L~~~k 251 (297)
T PF13170_consen 236 IVEEIKEVIDELKEQK 251 (297)
T ss_pred HHHHHHHHHHHHhhCc
Confidence 234445555555443
|
|
| >PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length | Back alignment and domain information |
|---|
Probab=93.28 E-value=12 Score=39.18 Aligned_cols=137 Identities=10% Similarity=0.067 Sum_probs=81.3
Q ss_pred HHhcCChhHHHHHHHHHHHCCCC-----CHHHH-HHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHH--HHc
Q 036072 255 LGRARQFETMVSMLEEMGEKGLL-----SMETF-KIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLEN--LGR 326 (631)
Q Consensus 255 ~~~~g~~~~A~~l~~~m~~~g~~-----~~~~~-~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~--~~~ 326 (631)
+-+.+++.+|.++|.+..+.--. ..+++ +.++++|.. ++.+.....+....+.- | ...|-.|..+ +.+
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~--~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQF--G-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhc--C-CchHHHHHHHHHHHH
Confidence 34678889999998888655332 33333 445566554 45555555555555432 2 2334444433 245
Q ss_pred CCChHHHHHHHHHHhcccC---------------CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC----CCCHHHHH
Q 036072 327 SKLPKEAQLLFDKLKHRFT---------------PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGF----KPDVVAHN 387 (631)
Q Consensus 327 ~g~~~~A~~l~~~m~~~~~---------------p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~----~p~~~ty~ 387 (631)
.+++.+|.+.+..-.++.. +|...=+..+..+...|++.++..+++.|...=+ .-+..+|+
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd 171 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYD 171 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHH
Confidence 6788888887776554311 1222235566777788888888888887776432 35777777
Q ss_pred HHHHHHHH
Q 036072 388 IMLEGLLK 395 (631)
Q Consensus 388 ~li~~~~~ 395 (631)
.++-.+.+
T Consensus 172 ~~vlmlsr 179 (549)
T PF07079_consen 172 RAVLMLSR 179 (549)
T ss_pred HHHHHHhH
Confidence 76655554
|
Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown. |
| >PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis [] | Back alignment and domain information |
|---|
Probab=93.25 E-value=9.9 Score=38.04 Aligned_cols=162 Identities=9% Similarity=0.049 Sum_probs=91.9
Q ss_pred HHHHHHHHHHhccCCHH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036072 434 AVYTCLITGFGNRRRMD---IVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIM 510 (631)
Q Consensus 434 ~~~~~li~~~~~~g~~~---~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li 510 (631)
.++..++.+|...+..+ +|..+++.+...... ....+..-+..+.+.++.+.+.+++.+|+..- .-....+..++
T Consensus 85 ~iL~~La~~~l~~~~~~~~~ka~~~l~~l~~e~~~-~~~~~~L~l~il~~~~~~~~~~~~L~~mi~~~-~~~e~~~~~~l 162 (278)
T PF08631_consen 85 SILRLLANAYLEWDTYESVEKALNALRLLESEYGN-KPEVFLLKLEILLKSFDEEEYEEILMRMIRSV-DHSESNFDSIL 162 (278)
T ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHHHHHHhCCC-CcHHHHHHHHHHhccCChhHHHHHHHHHHHhc-ccccchHHHHH
Confidence 45566778888777654 556666666544222 34555556777777899999999999999862 21334555555
Q ss_pred HHH---HHcCCHHHHHHHHHHHHHcCCCCCHH-HHHH-HHHH---HHHcCC------HHHHHHHHHHHHH-CCCCCCHHH
Q 036072 511 KSY---FQTGNYEMGRKVWDEMIRRGCCPDDN-SYTV-LIGG---LISQDR------SGEAYKYLEEMLE-KGMKAPVLD 575 (631)
Q Consensus 511 ~~~---~~~g~~~~A~~~~~~m~~~g~~p~~~-t~~~-li~~---~~~~g~------~~~A~~ll~~m~~-~g~~p~~~~ 575 (631)
..+ ... ....|...++.++...+.|... .... ++.- ..+.++ .+...+++..... .+.+.+..+
T Consensus 163 ~~i~~l~~~-~~~~a~~~ld~~l~~r~~~~~~~~~e~~vl~~~~~~~~~~~~~~~~~i~~l~~~~~~v~~~~~~~ls~~~ 241 (278)
T PF08631_consen 163 HHIKQLAEK-SPELAAFCLDYLLLNRFKSSEDQWLEKLVLTRVLLTTQSKDLSSSEKIESLEELLSIVEHSLGKQLSAEA 241 (278)
T ss_pred HHHHHHHhh-CcHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHcCCccccchhHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 555 333 3456777777776655555553 1111 1111 112111 4444455553332 233333333
Q ss_pred HH---HH----HHHHHhcCCHHHHHHHHHH
Q 036072 576 YN---KF----AADLSRAGRSYVLDELAQK 598 (631)
Q Consensus 576 ~~---~l----i~~~~~~g~~~~A~~l~~~ 598 (631)
-. ++ +..+.+.++++.|.++++-
T Consensus 242 ~~a~~~LLW~~~~~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 242 ASAIHTLLWNKGKKHYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHHHHHHHHHHHHHHHhhcCHHHHHHHHHH
Confidence 22 22 3446778999999999873
|
It is also involved in sporulation []. |
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=93.16 E-value=1.2 Score=46.80 Aligned_cols=64 Identities=8% Similarity=-0.031 Sum_probs=48.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036072 467 DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTI----HTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532 (631)
Q Consensus 467 ~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~Li~~~~~~g~~~~A~~~~~~m~~~ 532 (631)
+...++.+..+|.+.|++++|+..|++.++. .|+. .+|..+..+|...|+.++|...+++.++.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL--~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALEL--NPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4567777777888888888888888887775 4553 35777788888888888888888887764
|
|
| >PRK15331 chaperone protein SicA; Provisional | Back alignment and domain information |
|---|
Probab=93.13 E-value=0.7 Score=41.62 Aligned_cols=85 Identities=7% Similarity=0.002 Sum_probs=54.9
Q ss_pred hcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHH
Q 036072 257 RARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLL 336 (631)
Q Consensus 257 ~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l 336 (631)
..|++++|..+|.-+...++.+..-+..|..++-..+++++|+..|......+ .-|+..+-....+|...|+.+.|...
T Consensus 49 ~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~-~~dp~p~f~agqC~l~l~~~~~A~~~ 127 (165)
T PRK15331 49 NQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLL-KNDYRPVFFTGQCQLLMRKAAKARQC 127 (165)
T ss_pred HCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc-cCCCCccchHHHHHHHhCCHHHHHHH
Confidence 35777777777777776666666666666666666777777777776665544 23444444555666666777777776
Q ss_pred HHHHhc
Q 036072 337 FDKLKH 342 (631)
Q Consensus 337 ~~~m~~ 342 (631)
|....+
T Consensus 128 f~~a~~ 133 (165)
T PRK15331 128 FELVNE 133 (165)
T ss_pred HHHHHh
Confidence 666554
|
|
| >KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=93.09 E-value=16 Score=40.87 Aligned_cols=162 Identities=11% Similarity=0.077 Sum_probs=97.3
Q ss_pred HHHHHHccCHHHHHHHHHHHHhCCCCc---CHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcC
Q 036072 286 MNAFAAAKERKKAVAIFELMNKYKFKA---GVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVK 362 (631)
Q Consensus 286 i~~~~~~g~~~~A~~v~~~m~~~g~~~---~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g 362 (631)
|+-+.+.+.+++|+++.+..... .+ ........|+.+.-.|++++|-...-.|... +..-|.-.+..+...+
T Consensus 363 i~Wll~~k~yeeAl~~~k~~~~~--~~~~~i~kv~~~yI~HLl~~~~y~~Aas~~p~m~gn---~~~eWe~~V~~f~e~~ 437 (846)
T KOG2066|consen 363 IDWLLEKKKYEEALDAAKASIGN--EERFVIKKVGKTYIDHLLFEGKYDEAASLCPKMLGN---NAAEWELWVFKFAELD 437 (846)
T ss_pred HHHHHHhhHHHHHHHHHHhccCC--ccccchHHHHHHHHHHHHhcchHHHHHhhhHHHhcc---hHHHHHHHHHHhcccc
Confidence 66777788888888777655443 33 3455667788888888888888777777654 5666776666666666
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhc------CHHHH
Q 036072 363 NLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ------NAAVY 436 (631)
Q Consensus 363 ~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~------~~~~~ 436 (631)
+......++ ....-..+...|..++..+.. .+.. .+++...+ ..++...-..++++.-.. +....
T Consensus 438 ~l~~Ia~~l---Pt~~~rL~p~vYemvLve~L~-~~~~---~F~e~i~~--Wp~~Lys~l~iisa~~~q~~q~Se~~~L~ 508 (846)
T KOG2066|consen 438 QLTDIAPYL---PTGPPRLKPLVYEMVLVEFLA-SDVK---GFLELIKE--WPGHLYSVLTIISATEPQIKQNSESTALL 508 (846)
T ss_pred ccchhhccC---CCCCcccCchHHHHHHHHHHH-HHHH---HHHHHHHh--CChhhhhhhHHHhhcchHHHhhccchhHH
Confidence 654433322 221122456678888888776 2222 22222222 223333333333222111 33445
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHH
Q 036072 437 TCLITGFGNRRRMDIVYDLLKEMEE 461 (631)
Q Consensus 437 ~~li~~~~~~g~~~~A~~l~~~m~~ 461 (631)
..|+..|...+++..|+.++-..++
T Consensus 509 e~La~LYl~d~~Y~~Al~~ylklk~ 533 (846)
T KOG2066|consen 509 EVLAHLYLYDNKYEKALPIYLKLQD 533 (846)
T ss_pred HHHHHHHHHccChHHHHHHHHhccC
Confidence 5588889999999999988877654
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=93.09 E-value=2 Score=37.73 Aligned_cols=79 Identities=10% Similarity=0.101 Sum_probs=57.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCC---CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 036072 246 RTYNSMMSILGRARQFETMVSMLEEMGEKGL---LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLE 322 (631)
Q Consensus 246 ~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~---~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~ 322 (631)
..|+.- ....+.|++++|.+.|+.+..+-+ ....+.-.++.+|.+.+++++|+..++..++....-....|...+.
T Consensus 12 ~ly~~a-~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~ 90 (142)
T PF13512_consen 12 ELYQEA-QEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMR 90 (142)
T ss_pred HHHHHH-HHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHH
Confidence 344433 344567999999999999998866 3567888899999999999999999999998753322344544455
Q ss_pred HHH
Q 036072 323 NLG 325 (631)
Q Consensus 323 ~~~ 325 (631)
+++
T Consensus 91 gL~ 93 (142)
T PF13512_consen 91 GLS 93 (142)
T ss_pred HHH
Confidence 443
|
|
| >PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional | Back alignment and domain information |
|---|
Probab=93.09 E-value=2.6 Score=44.30 Aligned_cols=65 Identities=14% Similarity=0.000 Sum_probs=57.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHH---HHHHHHHHHHHccCHHHHHHHHHHHHhC
Q 036072 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSME---TFKIAMNAFAAAKERKKAVAIFELMNKY 308 (631)
Q Consensus 244 ~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~---~~~~li~~~~~~g~~~~A~~v~~~m~~~ 308 (631)
+...|+.+-.+|.+.|++++|+..|++..+.++-+.+ +|..+..+|...|+.++|++.++...+.
T Consensus 74 ~a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 74 TAEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4778889999999999999999999999988876553 5899999999999999999999999875
|
|
| >KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.86 E-value=6.5 Score=37.74 Aligned_cols=56 Identities=18% Similarity=0.205 Sum_probs=35.0
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC---CCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 036072 505 TYNMIMKSYFQTGNYEMGRKVWDEMIRRG---CCPDDNSYTVLIGGLISQDRSGEAYKYL 561 (631)
Q Consensus 505 t~~~Li~~~~~~g~~~~A~~~~~~m~~~g---~~p~~~t~~~li~~~~~~g~~~~A~~ll 561 (631)
.|...|-.|....++..|.+.++.-...+ -.-+..+...|+.+|- .|+.+++.+++
T Consensus 192 ~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~lenLL~ayd-~gD~E~~~kvl 250 (308)
T KOG1585|consen 192 AYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRSLENLLTAYD-EGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHHHHHHHHHhc-cCCHHHHHHHH
Confidence 35566666777778888888887744321 1224566777777664 47777666554
|
|
| >PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment | Back alignment and domain information |
|---|
Probab=92.77 E-value=2.4 Score=45.36 Aligned_cols=142 Identities=15% Similarity=0.157 Sum_probs=100.1
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036072 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514 (631)
Q Consensus 435 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~ 514 (631)
-.+.++..+-+.|..+.|+.+..+-..+ .....+.|+++.|.++.++. .+...|..|.+...
T Consensus 297 ~~~~i~~fL~~~G~~e~AL~~~~D~~~r------------FeLAl~lg~L~~A~~~a~~~------~~~~~W~~Lg~~AL 358 (443)
T PF04053_consen 297 QGQSIARFLEKKGYPELALQFVTDPDHR------------FELALQLGNLDIALEIAKEL------DDPEKWKQLGDEAL 358 (443)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHSS-HHHH------------HHHHHHCT-HHHHHHHCCCC------STHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHhhcCChHHH------------hHHHHhcCCHHHHHHHHHhc------CcHHHHHHHHHHHH
Confidence 3556677888889999999887654332 23445789999998876543 36789999999999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHH
Q 036072 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDE 594 (631)
Q Consensus 515 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~ 594 (631)
..|+++-|++.|.+..+ |..|+-.|.-.|+.+...++.+.....| .++....++.-.|+.++..+
T Consensus 359 ~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl~~~a~~~~------~~n~af~~~~~lgd~~~cv~ 423 (443)
T PF04053_consen 359 RQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKLAKIAEERG------DINIAFQAALLLGDVEECVD 423 (443)
T ss_dssp HTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-------HHHHHHHHHHHT-HHHHHH
T ss_pred HcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHHHHHHHHcc------CHHHHHHHHHHcCCHHHHHH
Confidence 99999999999987653 4556666888899999888888888887 56666777777888877776
Q ss_pred HHHHHHhcCCCchHHHHH
Q 036072 595 LAQKMRFSGKFEVSNVLA 612 (631)
Q Consensus 595 l~~~m~~~g~~~~~~~l~ 612 (631)
++.+ .|..+.+.+++
T Consensus 424 lL~~---~~~~~~A~~~A 438 (443)
T PF04053_consen 424 LLIE---TGRLPEAALFA 438 (443)
T ss_dssp HHHH---TT-HHHHHHHH
T ss_pred HHHH---cCCchHHHHHH
Confidence 6543 45445555544
|
This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B. |
| >COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.71 E-value=5.8 Score=39.26 Aligned_cols=145 Identities=18% Similarity=0.131 Sum_probs=93.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChH
Q 036072 252 MSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPK 331 (631)
Q Consensus 252 i~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~ 331 (631)
.......|++.+|..+|........-+.+.-..+..+|...|+.+.|..++..+...--.........-|..+.+.....
T Consensus 141 ~~~~~~~e~~~~a~~~~~~al~~~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~~ 220 (304)
T COG3118 141 AKELIEAEDFGEAAPLLKQALQAAPENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAATP 220 (304)
T ss_pred hhhhhhccchhhHHHHHHHHHHhCcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcCC
Confidence 34456778999999999988887776777888889999999999999999988765421222222222344444444444
Q ss_pred HHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCC
Q 036072 332 EAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK--GFKPDVVAHNIMLEGLLKIGK 398 (631)
Q Consensus 332 ~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~ty~~li~~~~~~g~ 398 (631)
+...+-..... .+.|...-..+...+...|+.++|.+.+-.+..+ |.. |...-..++..+.-.|.
T Consensus 221 ~~~~l~~~~aa-dPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~-d~~~Rk~lle~f~~~g~ 287 (304)
T COG3118 221 EIQDLQRRLAA-DPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFE-DGEARKTLLELFEAFGP 287 (304)
T ss_pred CHHHHHHHHHh-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccc-CcHHHHHHHHHHHhcCC
Confidence 33333333332 2336677777888888889999888877666654 333 44455566665555553
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=92.47 E-value=2.8 Score=41.89 Aligned_cols=150 Identities=11% Similarity=0.028 Sum_probs=94.6
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH----HHHHHHHHHcCCHHH
Q 036072 446 RRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTY----NMIMKSYFQTGNYEM 521 (631)
Q Consensus 446 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~----~~Li~~~~~~g~~~~ 521 (631)
.|+..+|-..++++.+. .+-|...++..=.+|..+|+.+.-...++++... ..++...| ..+.-++..+|-+++
T Consensus 116 ~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 116 RGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred cccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 46777777777777765 4447777777777888888888888888777753 23333222 333344457788888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036072 522 GRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK---GMKAPVLDYNKFAADLSRAGRSYVLDELAQK 598 (631)
Q Consensus 522 A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~---g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~ 598 (631)
|++.-++..+.+.. |.-.-.++...+...|+.+++.++..+-.+. +.-.-...|=...-.+...+.++.|+++|++
T Consensus 194 AEk~A~ralqiN~~-D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~ 272 (491)
T KOG2610|consen 194 AEKQADRALQINRF-DCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDR 272 (491)
T ss_pred HHHHHHhhccCCCc-chHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHH
Confidence 88888777765422 5555566666677778888888777654322 1111122344445555666778888887764
|
|
| >KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones] | Back alignment and domain information |
|---|
Probab=92.37 E-value=2.6 Score=43.39 Aligned_cols=124 Identities=9% Similarity=0.044 Sum_probs=69.4
Q ss_pred HHHhccCCHHHHHHHHHHHHHc-----CCCC---------CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHH
Q 036072 441 TGFGNRRRMDIVYDLLKEMEER-----GCPP---------DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTY 506 (631)
Q Consensus 441 ~~~~~~g~~~~A~~l~~~m~~~-----g~~p---------~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~ 506 (631)
+.|.+.|++..|..-|+..... +..+ -..+++.+..+|.+.+++..|++..+..++.+ ++|....
T Consensus 216 n~~fK~gk~~~A~~~Yerav~~l~~~~~~~~ee~~~~~~~k~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~-~~N~KAL 294 (397)
T KOG0543|consen 216 NVLFKEGKFKLAKKRYERAVSFLEYRRSFDEEEQKKAEALKLACHLNLAACYLKLKEYKEAIESCNKVLELD-PNNVKAL 294 (397)
T ss_pred hHHHhhchHHHHHHHHHHHHHHhhccccCCHHHHHHHHHHHHHHhhHHHHHHHhhhhHHHHHHHHHHHHhcC-CCchhHH
Confidence 3466678888888777764431 1111 12245555666667777777777777666654 4555555
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHHH
Q 036072 507 NMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS-GEAYKYLEEMLE 566 (631)
Q Consensus 507 ~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~-~~A~~ll~~m~~ 566 (631)
..=..+|...|+++.|+..|+++++.... |...-+.|+..-.+.... +...++|..|..
T Consensus 295 yRrG~A~l~~~e~~~A~~df~ka~k~~P~-Nka~~~el~~l~~k~~~~~~kekk~y~~mF~ 354 (397)
T KOG0543|consen 295 YRRGQALLALGEYDLARDDFQKALKLEPS-NKAARAELIKLKQKIREYEEKEKKMYANMFA 354 (397)
T ss_pred HHHHHHHHhhccHHHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 56666677777777777777777664322 333333344333333333 233555555543
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=92.22 E-value=7 Score=41.32 Aligned_cols=162 Identities=8% Similarity=-0.008 Sum_probs=106.3
Q ss_pred CHHHHHHHHHHHHHc-CCCCC-HHHHHHHHHHHHh---------cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 036072 448 RMDIVYDLLKEMEER-GCPPD-GLTYNALIKLMKI---------QKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516 (631)
Q Consensus 448 ~~~~A~~l~~~m~~~-g~~p~-~~t~~~li~~~~~---------~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~ 516 (631)
..+.|+.+|.+.... .+.|+ ...|..+..++.. ..+..+|.++.++..+.+ .-|......+..++...
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 467888899988722 34554 3445544443322 123456777888888876 56788888888888888
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHhcCCHHHHHHH
Q 036072 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG-MKAPVLDYNKFAADLSRAGRSYVLDEL 595 (631)
Q Consensus 517 g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g-~~p~~~~~~~li~~~~~~g~~~~A~~l 595 (631)
++++.|...|++....+.. ...+|......+.-.|+.++|.+.+++..+.. .+.-.......++.|+..+ .++|..+
T Consensus 352 ~~~~~a~~~f~rA~~L~Pn-~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~~-~~~~~~~ 429 (458)
T PRK11906 352 GQAKVSHILFEQAKIHSTD-IASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPNP-LKNNIKL 429 (458)
T ss_pred cchhhHHHHHHHHhhcCCc-cHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCCc-hhhhHHH
Confidence 9999999999999876432 34455555555677899999999999977753 1222333444455666554 6777777
Q ss_pred HHHHHhcC--CCchHHHHH
Q 036072 596 AQKMRFSG--KFEVSNVLA 612 (631)
Q Consensus 596 ~~~m~~~g--~~~~~~~l~ 612 (631)
+-+-.++. .....|++.
T Consensus 430 ~~~~~~~~~~~~~~~~~~~ 448 (458)
T PRK11906 430 YYKETESESHRVIIDNILK 448 (458)
T ss_pred HhhccccccchhhHHHHHH
Confidence 76554443 345666663
|
|
| >KOG1258 consensus mRNA processing protein [RNA processing and modification] | Back alignment and domain information |
|---|
Probab=92.17 E-value=20 Score=38.93 Aligned_cols=341 Identities=9% Similarity=-0.001 Sum_probs=187.5
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 036072 243 HNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLE 322 (631)
Q Consensus 243 p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~ 322 (631)
.+...|+.+|.---...+.+.+..++..+...-+.--.-|......=.+.|..+.+.++|++.+.. ++.+...|...+.
T Consensus 43 ~~f~~wt~li~~~~~~~~~~~~r~~y~~fL~kyPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~a-ip~SvdlW~~Y~~ 121 (577)
T KOG1258|consen 43 LDFDAWTTLIQENDSIEDVDALREVYDIFLSKYPLCYGYWKKFADYEYKLGNAENSVKVFERGVQA-IPLSVDLWLSYLA 121 (577)
T ss_pred hcccchHHHHhccCchhHHHHHHHHHHHHHhhCccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHh-hhhHHHHHHHHHH
Confidence 344556666655555555566777777777665554455666666667778889999999888874 5677777777766
Q ss_pred HHHc-CCChHHHHHHHHHHhcc---cCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH---
Q 036072 323 NLGR-SKLPKEAQLLFDKLKHR---FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLK--- 395 (631)
Q Consensus 323 ~~~~-~g~~~~A~~l~~~m~~~---~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~--- 395 (631)
.+.. .|+.+.....|+...+- .--+...|...|..-...+++.....+|+...+. ...-|+..-.-|.+
T Consensus 122 f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei----P~~~~~~~f~~f~~~l~ 197 (577)
T KOG1258|consen 122 FLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI----PLHQLNRHFDRFKQLLN 197 (577)
T ss_pred HHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh----hhhHhHHHHHHHHHHHh
Confidence 5544 47777888888887652 2234567888888888888999999999988874 22223322222221
Q ss_pred ------cCCHHHHHHHHHHHHHc---C-CCCcHHHHHHHHHHHhhc---CHHHH-------HHHHHHHhccCCHHHHHHH
Q 036072 396 ------IGKRSDAIKLFEVMKAK---G-PSPNVRSYTIMIWKFCKQ---NAAVY-------TCLITGFGNRRRMDIVYDL 455 (631)
Q Consensus 396 ------~g~~~~A~~ll~~m~~~---g-~~p~~~~~~~li~~~~~~---~~~~~-------~~li~~~~~~g~~~~A~~l 455 (631)
....+++.++-...... + ..+.......-+...-.. -.... ..--.+|.......+....
T Consensus 198 ~~~~~~l~~~d~~~~l~~~~~~~~~~~~~~~~~e~~~~~v~~~~~~s~~l~~~~~~l~~~~~~~~~~~~~s~~~~~kr~~ 277 (577)
T KOG1258|consen 198 QNEEKILLSIDELIQLRSDVAERSKITHSQEPLEELEIGVKDSTDPSKSLTEEKTILKRIVSIHEKVYQKSEEEEEKRWG 277 (577)
T ss_pred cCChhhhcCHHHHHHHhhhHHhhhhcccccChhHHHHHHHhhccCccchhhHHHHHHHHHHHHHHHHHHhhHhHHHHHHh
Confidence 12233333333222210 0 001111111111110000 00000 0001111122222222223
Q ss_pred HHHHHHc---CCC----CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Q 036072 456 LKEMEER---GCP----PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDE 528 (631)
Q Consensus 456 ~~~m~~~---g~~----p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~ 528 (631)
|+.-... .++ ++..+|..-+.--...|+.+.+.-+|+...-- +..=...|-..+.-....|+.+-|..++..
T Consensus 278 fE~~IkrpYfhvkpl~~aql~nw~~yLdf~i~~g~~~~~~~l~ercli~-cA~Y~efWiky~~~m~~~~~~~~~~~~~~~ 356 (577)
T KOG1258|consen 278 FEEGIKRPYFHVKPLDQAQLKNWRYYLDFEITLGDFSRVFILFERCLIP-CALYDEFWIKYARWMESSGDVSLANNVLAR 356 (577)
T ss_pred hhhhccccccccCcccHHHHHHHHHHhhhhhhcccHHHHHHHHHHHHhH-HhhhHHHHHHHHHHHHHcCchhHHHHHHHh
Confidence 3332221 122 23457777788788888888888888877532 111123344444444455888888877776
Q ss_pred HHHcCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH-HHHHHHHHHhcCCHHHHH
Q 036072 529 MIRRGCC--PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLD-YNKFAADLSRAGRSYVLD 593 (631)
Q Consensus 529 m~~~g~~--p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~-~~~li~~~~~~g~~~~A~ 593 (631)
..+.-++ |....+.+.+ .-..|++..|..+++...+.- |+... -..-+....+.|+.+.+.
T Consensus 357 ~~~i~~k~~~~i~L~~a~f--~e~~~n~~~A~~~lq~i~~e~--pg~v~~~l~~~~~e~r~~~~~~~~ 420 (577)
T KOG1258|consen 357 ACKIHVKKTPIIHLLEARF--EESNGNFDDAKVILQRIESEY--PGLVEVVLRKINWERRKGNLEDAN 420 (577)
T ss_pred hhhhcCCCCcHHHHHHHHH--HHhhccHHHHHHHHHHHHhhC--CchhhhHHHHHhHHHHhcchhhhh
Confidence 6654332 2333333332 234679999999999888763 44332 234456667788887777
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=92.10 E-value=15 Score=39.15 Aligned_cols=56 Identities=13% Similarity=0.140 Sum_probs=24.8
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 036072 509 IMKSYFQTGNYEMGRKVWDEMIRRG-CCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564 (631)
Q Consensus 509 Li~~~~~~g~~~~A~~~~~~m~~~g-~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m 564 (631)
|..++.+.|+.++|.+.+++|.+.. ..-+......|+.++...+.+.++..++.+-
T Consensus 265 LAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kY 321 (539)
T PF04184_consen 265 LAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKY 321 (539)
T ss_pred HHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHh
Confidence 3444444455555555555544321 1112233444455555555555555555444
|
The molecular function of this protein is uncertain. |
| >KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=92.04 E-value=2 Score=47.97 Aligned_cols=154 Identities=11% Similarity=0.126 Sum_probs=88.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHH----HHCC----------C---CCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEM----GEKG----------L---LSMETFKIAMNAFAAAKERKKAVAIFELMNK 307 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m----~~~g----------~---~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~ 307 (631)
....+.++.+|...+++-.-.-+++.. ...+ + ........-+..+.+...++-|+.+-+.-
T Consensus 283 ~ss~~~i~~~~d~~n~~v~ys~vl~~l~d~l~~w~~~~~vltsdg~~~~L~ek~le~kL~iL~kK~ly~~Ai~LAk~~-- 360 (933)
T KOG2114|consen 283 NSSSNRIFKAYDLRNRYVLYSSVLEDLSDNLIEWSFDCLVLTSDGVVHELIEKDLETKLDILFKKNLYKVAINLAKSQ-- 360 (933)
T ss_pred ccchhheeehhhhcCcccchHHhHHHHHHHHHhcCCcEEEEecCCceeeeeeccHHHHHHHHHHhhhHHHHHHHHHhc--
Confidence 345567777777776654333333332 2222 1 12234555666677777777776654332
Q ss_pred CCCCcCHHHHHHHHHHH----HcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH
Q 036072 308 YKFKAGVDTINCLLENL----GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDV 383 (631)
Q Consensus 308 ~g~~~~~~~~~~Ll~~~----~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 383 (631)
..+..+...++..| .+.|++++|...|-+-..-..|. .+|.-|....++.+-..+++.+.+.|+. +.
T Consensus 361 ---~~d~d~~~~i~~kYgd~Ly~Kgdf~~A~~qYI~tI~~le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~gla-~~ 431 (933)
T KOG2114|consen 361 ---HLDEDTLAEIHRKYGDYLYGKGDFDEATDQYIETIGFLEPS-----EVIKKFLDAQRIKNLTSYLEALHKKGLA-NS 431 (933)
T ss_pred ---CCCHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHcccCChH-----HHHHHhcCHHHHHHHHHHHHHHHHcccc-cc
Confidence 23444444444433 45677777777666554433332 3455566666777777777777777765 44
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHH
Q 036072 384 VAHNIMLEGLLKIGKRSDAIKLFEVM 409 (631)
Q Consensus 384 ~ty~~li~~~~~~g~~~~A~~ll~~m 409 (631)
..-..|+.+|.+.++.++..++.+.-
T Consensus 432 dhttlLLncYiKlkd~~kL~efI~~~ 457 (933)
T KOG2114|consen 432 DHTTLLLNCYIKLKDVEKLTEFISKC 457 (933)
T ss_pred hhHHHHHHHHHHhcchHHHHHHHhcC
Confidence 44566777788877777766665543
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.82 E-value=1.8 Score=42.89 Aligned_cols=78 Identities=10% Similarity=0.165 Sum_probs=47.6
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHHHH
Q 036072 504 HTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLE-----KGMKAPVLDYNK 578 (631)
Q Consensus 504 ~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~-----~g~~p~~~~~~~ 578 (631)
.++..++..+...|+++.+...++++...... |...|..++.+|.+.|+...|+..|+++.+ .|+.|...+...
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~-~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPY-DEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 34555666666666666666666666665433 566666666666666666666666665543 366666665555
Q ss_pred HHHH
Q 036072 579 FAAD 582 (631)
Q Consensus 579 li~~ 582 (631)
+...
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 4444
|
|
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=91.74 E-value=4 Score=39.89 Aligned_cols=103 Identities=16% Similarity=0.150 Sum_probs=74.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCC---CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCC-C-CcCHHHHHHH
Q 036072 246 RTYNSMMSILGRARQFETMVSMLEEMGEKGL---LSMETFKIAMNAFAAAKERKKAVAIFELMNKYK-F-KAGVDTINCL 320 (631)
Q Consensus 246 ~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~---~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g-~-~~~~~~~~~L 320 (631)
..|+.-+..+- .|++..|...|....+..+ ..+..+-=|..++...|+++.|..+|..+.+.- - +--+..+-.|
T Consensus 143 ~~Y~~A~~~~k-sgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKl 221 (262)
T COG1729 143 KLYNAALDLYK-SGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKL 221 (262)
T ss_pred HHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHH
Confidence 36887777664 4668888888888888766 355666677888888888888888888777642 1 2234666677
Q ss_pred HHHHHcCCChHHHHHHHHHHhcccCCChh
Q 036072 321 LENLGRSKLPKEAQLLFDKLKHRFTPNLT 349 (631)
Q Consensus 321 l~~~~~~g~~~~A~~l~~~m~~~~~p~~~ 349 (631)
.....+.|+.++|..+|+++.++++-+..
T Consensus 222 g~~~~~l~~~d~A~atl~qv~k~YP~t~a 250 (262)
T COG1729 222 GVSLGRLGNTDEACATLQQVIKRYPGTDA 250 (262)
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHCCCCHH
Confidence 77777888888888888888777654443
|
|
| >COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=91.56 E-value=1.9 Score=42.60 Aligned_cols=79 Identities=11% Similarity=0.141 Sum_probs=69.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh-----CCCCcCHHHHHH
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNK-----YKFKAGVDTINC 319 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~-----~g~~~~~~~~~~ 319 (631)
..++..+++.+...|+++.+...++++....+.+...|..+|.+|.+.|+...|+..|+.+.+ .|+.|...+...
T Consensus 153 ~~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~ 232 (280)
T COG3629 153 IKALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRAL 232 (280)
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHH
Confidence 567888999999999999999999999999999999999999999999999999999998876 588888777666
Q ss_pred HHHH
Q 036072 320 LLEN 323 (631)
Q Consensus 320 Ll~~ 323 (631)
....
T Consensus 233 y~~~ 236 (280)
T COG3629 233 YEEI 236 (280)
T ss_pred HHHH
Confidence 5554
|
|
| >KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=91.26 E-value=2.9 Score=45.07 Aligned_cols=155 Identities=12% Similarity=0.019 Sum_probs=106.6
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 036072 437 TCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516 (631)
Q Consensus 437 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~ 516 (631)
+.+++.+.++|..++|+++- +|.... .....+.|+++.|.++..+.. +..-|..|.++....
T Consensus 618 t~va~Fle~~g~~e~AL~~s---------~D~d~r---Felal~lgrl~iA~~la~e~~------s~~Kw~~Lg~~al~~ 679 (794)
T KOG0276|consen 618 TKVAHFLESQGMKEQALELS---------TDPDQR---FELALKLGRLDIAFDLAVEAN------SEVKWRQLGDAALSA 679 (794)
T ss_pred hhHHhHhhhccchHhhhhcC---------CChhhh---hhhhhhcCcHHHHHHHHHhhc------chHHHHHHHHHHhhc
Confidence 34556666677777776543 222211 122346789999988876643 556789999999999
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 036072 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELA 596 (631)
Q Consensus 517 g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~ 596 (631)
|++..|.+.|....+ |..|+-.+...|+.+....+-....+.| ..|.-..+|...|+++++.+++
T Consensus 680 ~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~~~~~~g------~~N~AF~~~~l~g~~~~C~~lL 744 (794)
T KOG0276|consen 680 GELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLASLAKKQG------KNNLAFLAYFLSGDYEECLELL 744 (794)
T ss_pred ccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHHHHHhhc------ccchHHHHHHHcCCHHHHHHHH
Confidence 999999998886654 4556777778888877777777777777 3345556778889999988888
Q ss_pred HHH---HhcC-------CCchHHHHHHHHHhhhhhhhc
Q 036072 597 QKM---RFSG-------KFEVSNVLARWAETTKNRVYR 624 (631)
Q Consensus 597 ~~m---~~~g-------~~~~~~~l~~~~~~~k~~~~~ 624 (631)
.+- ++.. .-.+++++..|.+.+.+-..+
T Consensus 745 i~t~r~peAal~ArtYlps~vs~iv~~wk~~l~k~~~k 782 (794)
T KOG0276|consen 745 ISTQRLPEAALFARTYLPSQVSRIVELWKEDLSKVSEK 782 (794)
T ss_pred HhcCcCcHHHHHHhhhChHHHHHHHHHHHHHhhhhhhh
Confidence 654 2221 226888999999888754443
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=91.12 E-value=12 Score=34.12 Aligned_cols=135 Identities=14% Similarity=0.198 Sum_probs=89.6
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036072 453 YDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532 (631)
Q Consensus 453 ~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~ 532 (631)
.++++.+.+.+++|+...|..++..+.+.|++.... .+...++-+|.......+-.+. +....+.++--.|...
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~----qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLH----QLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH----HHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 456666778899999999999999999999865544 4455666777666655553333 2334445544444442
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036072 533 GCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRF 601 (631)
Q Consensus 533 g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 601 (631)
-...+..+++.+...|++-+|+.+.+...... ......++.+..+.++...-..+++-..+
T Consensus 88 ----L~~~~~~iievLL~~g~vl~ALr~ar~~~~~~----~~~~~~fLeAA~~~~D~~lf~~V~~ff~~ 148 (167)
T PF07035_consen 88 ----LGTAYEEIIEVLLSKGQVLEALRYARQYHKVD----SVPARKFLEAAANSNDDQLFYAVFRFFEE 148 (167)
T ss_pred ----hhhhHHHHHHHHHhCCCHHHHHHHHHHcCCcc----cCCHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 11246677888999999999999998763322 12235677777788877665555554444
|
|
| >PRK11906 transcriptional regulator; Provisional | Back alignment and domain information |
|---|
Probab=90.44 E-value=12 Score=39.64 Aligned_cols=146 Identities=12% Similarity=0.121 Sum_probs=80.3
Q ss_pred hhHHHHHHHHHH---HCCCCCHHHHHHHHHHHHH---------ccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCC
Q 036072 261 FETMVSMLEEMG---EKGLLSMETFKIAMNAFAA---------AKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSK 328 (631)
Q Consensus 261 ~~~A~~l~~~m~---~~g~~~~~~~~~li~~~~~---------~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g 328 (631)
.+.|..+|.+.. +..+.....|..+..++.. .....+|.+.-+...+.+ +-|......+..++.-.+
T Consensus 274 ~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~~ 352 (458)
T PRK11906 274 IYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLSG 352 (458)
T ss_pred HHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhhc
Confidence 345666666666 3332223344433333222 123445566666666665 556666666666666667
Q ss_pred ChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 036072 329 LPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKG-FKPDVVAHNIMLEGLLKIGKRSDAIKLFE 407 (631)
Q Consensus 329 ~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~ty~~li~~~~~~g~~~~A~~ll~ 407 (631)
+.+.|...|++...-.+....+|....-...-+|+.++|.+.+++..+.. .+.-.......+..|+.. ..++|+.+|-
T Consensus 353 ~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~~-~~~~~~~~~~ 431 (458)
T PRK11906 353 QAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVPN-PLKNNIKLYY 431 (458)
T ss_pred chhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcCC-chhhhHHHHh
Confidence 77777777777766544455566666666666777777777777755431 111222333334455543 3566666664
Q ss_pred H
Q 036072 408 V 408 (631)
Q Consensus 408 ~ 408 (631)
+
T Consensus 432 ~ 432 (458)
T PRK11906 432 K 432 (458)
T ss_pred h
Confidence 3
|
|
| >PF13512 TPR_18: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=90.35 E-value=5.9 Score=34.88 Aligned_cols=72 Identities=17% Similarity=0.203 Sum_probs=43.3
Q ss_pred HhcCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 036072 479 KIQKMPDEAVRIYKEMVRSG--FKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLIS 550 (631)
Q Consensus 479 ~~~g~~~~A~~l~~~m~~~g--~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 550 (631)
.+.|++++|.+.|+.+...- -.-....--.|+.+|.+.+++++|...+++.++....--..-|...+.|++.
T Consensus 21 l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 21 LQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 36677777777777776531 0122344556677777777777777777777765433333445555555543
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=90.28 E-value=24 Score=36.30 Aligned_cols=65 Identities=17% Similarity=0.190 Sum_probs=39.6
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 502 TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP---DDNSYTVLIGGLISQDRSGEAYKYLEEMLE 566 (631)
Q Consensus 502 ~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p---~~~t~~~li~~~~~~g~~~~A~~ll~~m~~ 566 (631)
...++..+.+.+.+.|.++.|...+..+...+... +....-.....+...|+.++|+..+++...
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 34566677777777777777777777766543111 233333344555666777777777766655
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG1729 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=90.16 E-value=7.1 Score=38.18 Aligned_cols=97 Identities=19% Similarity=0.272 Sum_probs=52.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCC-CHHHHHHHH
Q 036072 470 TYNALIKLMKIQKMPDEAVRIYKEMVRSGF--KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR-GCCP-DDNSYTVLI 545 (631)
Q Consensus 470 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~-g~~p-~~~t~~~li 545 (631)
.|+..+..| +.|++..|.+.|...++..- .-....+..|..++...|+++.|..+|..+.+. +-.| -+..+--|.
T Consensus 144 ~Y~~A~~~~-ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDLY-KSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHHH-HcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 455555544 55556666666666665310 112233445666666666666666666666543 1111 123444455
Q ss_pred HHHHHcCCHHHHHHHHHHHHHC
Q 036072 546 GGLISQDRSGEAYKYLEEMLEK 567 (631)
Q Consensus 546 ~~~~~~g~~~~A~~ll~~m~~~ 567 (631)
....+.|+.++|..+|++..+.
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~ 244 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKR 244 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHH
Confidence 5555666666666666666554
|
|
| >KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=90.03 E-value=37 Score=38.03 Aligned_cols=93 Identities=11% Similarity=0.132 Sum_probs=73.1
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 036072 498 GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577 (631)
Q Consensus 498 g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~ 577 (631)
|......+.+--+.-+...|+..+|.++-.+.. -||...|-.-+.+++..+++++-.++-+.+.. +.-|.
T Consensus 679 ~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk----ipdKr~~wLk~~aLa~~~kweeLekfAkskks------PIGy~ 748 (829)
T KOG2280|consen 679 GGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK----IPDKRLWWLKLTALADIKKWEELEKFAKSKKS------PIGYL 748 (829)
T ss_pred ccccccCcHHHHHHHHHHccchHHHHHHHHhcC----CcchhhHHHHHHHHHhhhhHHHHHHHHhccCC------CCCch
Confidence 333444556666777788899999999877765 36889999999999999999988877766542 33466
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 036072 578 KFAADLSRAGRSYVLDELAQKMR 600 (631)
Q Consensus 578 ~li~~~~~~g~~~~A~~l~~~m~ 600 (631)
-++.+|.+.|+.++|.+++-+..
T Consensus 749 PFVe~c~~~~n~~EA~KYiprv~ 771 (829)
T KOG2280|consen 749 PFVEACLKQGNKDEAKKYIPRVG 771 (829)
T ss_pred hHHHHHHhcccHHHHhhhhhccC
Confidence 78999999999999999998775
|
|
| >KOG2610 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=89.86 E-value=7.5 Score=39.02 Aligned_cols=154 Identities=6% Similarity=-0.118 Sum_probs=105.0
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhC---CCCcCHHHHHHHHHHHHcCCChHH
Q 036072 256 GRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKY---KFKAGVDTINCLLENLGRSKLPKE 332 (631)
Q Consensus 256 ~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~---g~~~~~~~~~~Ll~~~~~~g~~~~ 332 (631)
--.|.+.+|-..++++.+..+.+.-.+...=.+|.-.|+...-...++.+.-. +++....+...+.-++...|-+++
T Consensus 114 ~~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 114 WGRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPKWNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred hccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccccCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 34577888888888888877767667777778888888888888888877654 222223333334445567899999
Q ss_pred HHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 036072 333 AQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK---GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVM 409 (631)
Q Consensus 333 A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m 409 (631)
|++.-++..+-.+.|.-.-.++...+--.++..++.++..+-.+. +--.-..-|-...-.+...+.++.|+++|+.-
T Consensus 194 AEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD~e 273 (491)
T KOG2610|consen 194 AEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYDRE 273 (491)
T ss_pred HHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHHHH
Confidence 998888877666667777788888888889999988877654321 10001112333344556678899999998653
|
|
| >COG4649 Uncharacterized protein conserved in bacteria [Function unknown] | Back alignment and domain information |
|---|
Probab=89.75 E-value=16 Score=33.34 Aligned_cols=132 Identities=11% Similarity=0.076 Sum_probs=76.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC--HHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHH-HHHHH-
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS--METFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVD-TINCL- 320 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~--~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~-~~~~L- 320 (631)
...|...++ +++.+..++|+.-|.++.+.|.-+ .-..-.+.......|+...|+..|+++-...-.|-.. -...|
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlr 137 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLR 137 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHH
Confidence 344444443 456677888888888888877632 2233344455666788888888888876654333322 11111
Q ss_pred -HHHHHcCCChHHHHHHHHHHhc-ccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036072 321 -LENLGRSKLPKEAQLLFDKLKH-RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK 377 (631)
Q Consensus 321 -l~~~~~~g~~~~A~~l~~~m~~-~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~ 377 (631)
.-.+...|.++....-.+-+.. +.+.-...-.+|.-+-.+.|++.+|.+.|..+.+.
T Consensus 138 aa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~D 196 (221)
T COG4649 138 AAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAND 196 (221)
T ss_pred HHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHcc
Confidence 1234556777766666665542 33333344455666666777777777777766653
|
|
| >PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1 | Back alignment and domain information |
|---|
Probab=89.55 E-value=16 Score=33.24 Aligned_cols=113 Identities=13% Similarity=0.244 Sum_probs=76.5
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 036072 488 VRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567 (631)
Q Consensus 488 ~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~ 567 (631)
.++++.+.+.++.|+...|..+++.+.+.|.+... ..+...++-+|.......+-.+. +....+.++--+|..+
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L----~qllq~~Vi~DSk~lA~~LLs~~--~~~~~~~Ql~lDMLkR 87 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQL----HQLLQYHVIPDSKPLACQLLSLG--NQYPPAYQLGLDMLKR 87 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH----HHHHhhcccCCcHHHHHHHHHhH--ccChHHHHHHHHHHHH
Confidence 45566677789999999999999999999987654 44555666677766665553332 3334455554455433
Q ss_pred -CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHH
Q 036072 568 -GMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVL 611 (631)
Q Consensus 568 -g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~l 611 (631)
+ ..+..++..+...|++-+|.++.++...........++
T Consensus 88 L~-----~~~~~iievLL~~g~vl~ALr~ar~~~~~~~~~~~~fL 127 (167)
T PF07035_consen 88 LG-----TAYEEIIEVLLSKGQVLEALRYARQYHKVDSVPARKFL 127 (167)
T ss_pred hh-----hhHHHHHHHHHhCCCHHHHHHHHHHcCCcccCCHHHHH
Confidence 2 14667888999999999999999886444433333333
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=89.25 E-value=1.2 Score=30.37 Aligned_cols=39 Identities=10% Similarity=0.044 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHH
Q 036072 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIA 285 (631)
Q Consensus 247 ~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~l 285 (631)
+|..+...|.+.|++++|.++|++..+..+-+...+..+
T Consensus 3 ~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~L 41 (44)
T PF13428_consen 3 AWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRAL 41 (44)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHh
Confidence 445555666666666666666666666555555544433
|
|
| >PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene | Back alignment and domain information |
|---|
Probab=89.14 E-value=32 Score=36.72 Aligned_cols=59 Identities=7% Similarity=0.135 Sum_probs=34.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 473 ALIKLMKIQKMPDEAVRIYKEMVRSG-FKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIR 531 (631)
Q Consensus 473 ~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~ 531 (631)
.+...+-+.|+.++|.+.+++|.+.. ..-+......|+.++...+.+.++..++.+..+
T Consensus 264 RLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdD 323 (539)
T PF04184_consen 264 RLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDD 323 (539)
T ss_pred HHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhcc
Confidence 34445556677777777777766532 111233555666777777777777777666543
|
The molecular function of this protein is uncertain. |
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=88.56 E-value=15 Score=37.42 Aligned_cols=124 Identities=15% Similarity=0.023 Sum_probs=56.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCC-----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCCCHHHH---
Q 036072 474 LIKLMKIQKMPDEAVRIYKEMVRSGF-----KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIR----RGCCPDDNSY--- 541 (631)
Q Consensus 474 li~~~~~~g~~~~A~~l~~~m~~~g~-----~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~----~g~~p~~~t~--- 541 (631)
+-.+....+.++++++.|+...+... ......|..|-..|....++++|.-+..+..+ .++.--..-|
T Consensus 128 ~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~ 207 (518)
T KOG1941|consen 128 MGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAM 207 (518)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHH
Confidence 44444455556666666655543211 11223455566666666666666555444332 1221111112
Q ss_pred --HHHHHHHHHcCCHHHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHhcCCHHHHHHHHH
Q 036072 542 --TVLIGGLISQDRSGEAYKYLEEMLE----KGMKAP-VLDYNKFAADLSRAGRSYVLDELAQ 597 (631)
Q Consensus 542 --~~li~~~~~~g~~~~A~~ll~~m~~----~g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~ 597 (631)
-.|..++...|..-+|.+..++..+ .|-.+. ......+.+.|...|+.|.|..-++
T Consensus 208 ~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe 270 (518)
T KOG1941|consen 208 SLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRALQARCLLCFADIYRSRGDLERAFRRYE 270 (518)
T ss_pred HHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHH
Confidence 2233345555666556555555433 231111 1223455555666666666554444
|
|
| >PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases | Back alignment and domain information |
|---|
Probab=88.28 E-value=33 Score=35.24 Aligned_cols=62 Identities=11% Similarity=0.125 Sum_probs=31.0
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036072 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPP---DGLTYNALIKLMKIQKMPDEAVRIYKEMVR 496 (631)
Q Consensus 435 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 496 (631)
+|..++..+.+.|.++.|...+..+...+... +....-.-+..+-..|+.++|+..++...+
T Consensus 148 ~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~ 212 (352)
T PF02259_consen 148 TWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLK 212 (352)
T ss_pred HHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 44455555666666666666666655432111 122222233444455555666666655554
|
Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding |
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=88.07 E-value=21 Score=32.81 Aligned_cols=203 Identities=17% Similarity=0.117 Sum_probs=106.2
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHH
Q 036072 348 LTTYTVLLGGWCRVKNLMEAGRVWNEMIDK-GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIW 426 (631)
Q Consensus 348 ~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~ 426 (631)
...+......+...+++..+...+...... ........+..+...+...++...+.+.+.........+...
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 131 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPDLA------- 131 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcchH-------
Confidence 445555566666666666666666555542 122334445555555555666666666666655433222100
Q ss_pred HHhhcCHHHHHHHHH-HHhccCCHHHHHHHHHHHHHcCC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCH
Q 036072 427 KFCKQNAAVYTCLIT-GFGNRRRMDIVYDLLKEMEERGC--PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTI 503 (631)
Q Consensus 427 ~~~~~~~~~~~~li~-~~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 503 (631)
...... .+...|+++.|...+........ ......+......+...++.+.+...+....+.......
T Consensus 132 ---------~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 202 (291)
T COG0457 132 ---------EALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDA 202 (291)
T ss_pred ---------HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccch
Confidence 000111 45556667777776666643211 012233333333355666777777777776664211134
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 036072 504 HTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567 (631)
Q Consensus 504 ~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~ 567 (631)
..+..+...+...++++.|...+......... ....+..+...+...+..+++...+.+....
T Consensus 203 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 265 (291)
T COG0457 203 EALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEALEKALEL 265 (291)
T ss_pred HHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 55666666666677777777777766654221 1333333334444555666666666666554
|
|
| >PF13428 TPR_14: Tetratricopeptide repeat | Back alignment and domain information |
|---|
Probab=88.02 E-value=1.2 Score=30.26 Aligned_cols=20 Identities=25% Similarity=0.297 Sum_probs=7.6
Q ss_pred HHHHcCCChHHHHHHHHHHh
Q 036072 322 ENLGRSKLPKEAQLLFDKLK 341 (631)
Q Consensus 322 ~~~~~~g~~~~A~~l~~~m~ 341 (631)
..|...|++++|+++|+++.
T Consensus 9 ~~~~~~G~~~~A~~~~~~~l 28 (44)
T PF13428_consen 9 RAYRRLGQPDEAERLLRRAL 28 (44)
T ss_pred HHHHHcCCHHHHHHHHHHHH
Confidence 33333333333333333333
|
|
| >KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures] | Back alignment and domain information |
|---|
Probab=87.94 E-value=16 Score=37.13 Aligned_cols=171 Identities=13% Similarity=0.110 Sum_probs=91.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCC---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHH
Q 036072 350 TYTVLLGGWCRVKNLMEAGRVWNEMIDK-GFKP---DVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMI 425 (631)
Q Consensus 350 ~y~~Li~~~~~~g~~~~A~~l~~~m~~~-g~~p---~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li 425 (631)
.|-.+.+++-+.-++.+++.+-..-... |..| ......++-.++...+.++++++.|+...+-....+....
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~L---- 160 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAML---- 160 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCcee----
Confidence 3444445555555555555544443322 2222 1123334556666667778888877776543211111000
Q ss_pred HHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHH----cCCCCCHHHHHH-----HHHHHHhcCChhHHHHHHHHHHH
Q 036072 426 WKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEE----RGCPPDGLTYNA-----LIKLMKIQKMPDEAVRIYKEMVR 496 (631)
Q Consensus 426 ~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~~~t~~~-----li~~~~~~g~~~~A~~l~~~m~~ 496 (631)
.-.++-.|-..|.+..|+++|.-+..+..+ -++.--..-|.. |.-++...|.+-.|.+..++..+
T Consensus 161 ------Elqvcv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~k 234 (518)
T KOG1941|consen 161 ------ELQVCVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMK 234 (518)
T ss_pred ------eeehhhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 123455566677777777777665554332 233322223333 23356677887777777776554
Q ss_pred ----CCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036072 497 ----SGFKPT-IHTYNMIMKSYFQTGNYEMGRKVWDEMI 530 (631)
Q Consensus 497 ----~g~~p~-~~t~~~Li~~~~~~g~~~~A~~~~~~m~ 530 (631)
.|-.+. ......+.+.|...|+.+.|+.-|+...
T Consensus 235 lal~~Gdra~~arc~~~~aDIyR~~gd~e~af~rYe~Am 273 (518)
T KOG1941|consen 235 LALQHGDRALQARCLLCFADIYRSRGDLERAFRRYEQAM 273 (518)
T ss_pred HHHHhCChHHHHHHHHHHHHHHHhcccHhHHHHHHHHHH
Confidence 342221 2334566777888899888887777543
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=87.70 E-value=6.2 Score=36.48 Aligned_cols=92 Identities=10% Similarity=-0.023 Sum_probs=44.5
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHhcccC---CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc---CCCCCH----HHH
Q 036072 317 INCLLENLGRSKLPKEAQLLFDKLKHRFT---PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK---GFKPDV----VAH 386 (631)
Q Consensus 317 ~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~---p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~----~ty 386 (631)
+..+.+.|++.|+.+.|.+.|.++.+... .-...+-.+|......+++..+...+.+.... |...+. ..|
T Consensus 39 ~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~~ 118 (177)
T PF10602_consen 39 LEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKVY 118 (177)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 34445555555555555555555543211 11234445555555556665555555544432 111111 122
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHH
Q 036072 387 NIMLEGLLKIGKRSDAIKLFEVMK 410 (631)
Q Consensus 387 ~~li~~~~~~g~~~~A~~ll~~m~ 410 (631)
..+ .+...+++..|-+.|-+..
T Consensus 119 ~gL--~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 119 EGL--ANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHH--HHHHhchHHHHHHHHHccC
Confidence 222 2234678888888886654
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.64 E-value=7.2 Score=38.81 Aligned_cols=105 Identities=15% Similarity=0.228 Sum_probs=72.6
Q ss_pred cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC---CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 036072 462 RGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS---GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD 538 (631)
Q Consensus 462 ~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~---g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 538 (631)
.|......+...++..-....+++.+..++-++... -..|+...+ +.++. +-.-+.++++.++..=+..|+.||.
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~-~~irl-llky~pq~~i~~l~npIqYGiF~dq 135 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIH-TWIRL-LLKYDPQKAIYTLVNPIQYGIFPDQ 135 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHH-HHHHH-HHccChHHHHHHHhCcchhccccch
Confidence 455556666677776666677888888887777643 112222211 22222 2234667888888888888999999
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 036072 539 NSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568 (631)
Q Consensus 539 ~t~~~li~~~~~~g~~~~A~~ll~~m~~~g 568 (631)
.+++.+|+.+.+.+++.+|..+...|+...
T Consensus 136 f~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 136 FTFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hhHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 999999999999999988888888777654
|
|
| >PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1 | Back alignment and domain information |
|---|
Probab=87.47 E-value=2.8 Score=34.28 Aligned_cols=59 Identities=14% Similarity=0.115 Sum_probs=34.8
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHH
Q 036072 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLL 355 (631)
Q Consensus 297 ~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li 355 (631)
+..+.++.+....+.|++.+..+.+++|.+.+++..|.++|+.++.+..+...+|..++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~~~~~~Y~~~l 86 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCGNKKEIYPYIL 86 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTTT-TTHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccChHHHHHHHH
Confidence 44555556666666777777777777777777777777777777665444444565555
|
9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R .... |
| >cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va | Back alignment and domain information |
|---|
Probab=87.47 E-value=2.8 Score=33.91 Aligned_cols=59 Identities=14% Similarity=0.131 Sum_probs=31.4
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHH
Q 036072 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLL 355 (631)
Q Consensus 297 ~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li 355 (631)
++.+.++.+....+.|++.+..+.+++|.+.+++..|.++|+.++.+...+..+|..++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~~~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCGAHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHccCchhhHHHHH
Confidence 34444445555555566666666666666666666666666655544333333444443
|
Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios. |
| >PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed | Back alignment and domain information |
|---|
Probab=87.42 E-value=9.8 Score=35.58 Aligned_cols=71 Identities=8% Similarity=0.062 Sum_probs=41.8
Q ss_pred hHHHHHHHHHHHCCCC-CHHHHHHHHHHHHHccCHHHHHHHHHHHHhC---CCCcCHHHHHHHHHHHHcCCChHHH
Q 036072 262 ETMVSMLEEMGEKGLL-SMETFKIAMNAFAAAKERKKAVAIFELMNKY---KFKAGVDTINCLLENLGRSKLPKEA 333 (631)
Q Consensus 262 ~~A~~l~~~m~~~g~~-~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~---g~~~~~~~~~~Ll~~~~~~g~~~~A 333 (631)
+.|...|-.+...+.+ +++....|...|. ..+.+++++++....+. +-.+|+..+..|+..|.+.|+.+.|
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~A 197 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQA 197 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhh
Confidence 4566666666666664 4444444444443 56677777776666553 2245666666666666666666655
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.36 E-value=15 Score=31.76 Aligned_cols=90 Identities=11% Similarity=0.032 Sum_probs=43.9
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCH---HHHHHHHHHHHHcC
Q 036072 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR-GCCPDD---NSYTVLIGGLISQD 552 (631)
Q Consensus 477 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~---~t~~~li~~~~~~g 552 (631)
+.+..|+++.|++.|.+.+..- +-....||.=..++.-.|+.++|.+=+++..+. |-+ .. ..|..-...|...|
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~-P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g 129 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLA-PERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLG 129 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhc-ccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhC
Confidence 3445556666666665555431 234455555555555566666665555555542 221 11 11222222234455
Q ss_pred CHHHHHHHHHHHHHCC
Q 036072 553 RSGEAYKYLEEMLEKG 568 (631)
Q Consensus 553 ~~~~A~~ll~~m~~~g 568 (631)
+-+.|..-|+...+.|
T Consensus 130 ~dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 130 NDDAARADFEAAAQLG 145 (175)
T ss_pred chHHHHHhHHHHHHhC
Confidence 5555555555555554
|
|
| >KOG4555 consensus TPR repeat-containing protein [Function unknown] | Back alignment and domain information |
|---|
Probab=87.10 E-value=17 Score=31.48 Aligned_cols=90 Identities=17% Similarity=-0.004 Sum_probs=54.3
Q ss_pred HHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHH---HHHHHHHHHHcCC
Q 036072 323 NLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK-GFKPDVVA---HNIMLEGLLKIGK 398 (631)
Q Consensus 323 ~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t---y~~li~~~~~~g~ 398 (631)
++...|+.+.|++.|.+...-.+.....||.-..++--.|+.++|++=+++..+. |-+ +... |..--..|...|+
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~-trtacqa~vQRg~lyRl~g~ 130 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQ-TRTACQAFVQRGLLYRLLGN 130 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCcc-chHHHHHHHHHHHHHHHhCc
Confidence 3455667777777777665555556667777777777777777777766666654 222 2222 2222234555677
Q ss_pred HHHHHHHHHHHHHcC
Q 036072 399 RSDAIKLFEVMKAKG 413 (631)
Q Consensus 399 ~~~A~~ll~~m~~~g 413 (631)
-+.|..=|+..-+.|
T Consensus 131 dd~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 131 DDAARADFEAAAQLG 145 (175)
T ss_pred hHHHHHhHHHHHHhC
Confidence 777777776666555
|
|
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=87.08 E-value=34 Score=34.00 Aligned_cols=135 Identities=10% Similarity=0.083 Sum_probs=81.6
Q ss_pred CHHHHHHHHHHHHH-cCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHH-CCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 036072 448 RMDIVYDLLKEMEE-RGCPPDGLTYNALIKLMKIQK--MPDEAVRIYKEMVR-SGFKPTIHTYNMIMKSYFQTGNYEMGR 523 (631)
Q Consensus 448 ~~~~A~~l~~~m~~-~g~~p~~~t~~~li~~~~~~g--~~~~A~~l~~~m~~-~g~~p~~~t~~~Li~~~~~~g~~~~A~ 523 (631)
.+.+|+++|+.... ..+--|..+...+++...... ....-.++.+-+.. .+-.++..+...++..++..+++.+-.
T Consensus 143 ~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~kl~ 222 (292)
T PF13929_consen 143 IVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNKLF 222 (292)
T ss_pred HHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHHHH
Confidence 34555555553221 224446666666666655422 12222223333332 235677788888888888888888888
Q ss_pred HHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH-----HHHCCCCCCHHHHHHHHHH
Q 036072 524 KVWDEMIRR-GCCPDDNSYTVLIGGLISQDRSGEAYKYLEE-----MLEKGMKAPVLDYNKFAAD 582 (631)
Q Consensus 524 ~~~~~m~~~-g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~-----m~~~g~~p~~~~~~~li~~ 582 (631)
++|+..... +..-|...|..+|+.....|+..-..++.++ +.+.|+..+...-..+-..
T Consensus 223 ~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~L 287 (292)
T PF13929_consen 223 QFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSEL 287 (292)
T ss_pred HHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHH
Confidence 888877764 5566888888888888888888766666553 2334555555444444333
|
|
| >PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome | Back alignment and domain information |
|---|
Probab=86.86 E-value=9.1 Score=35.37 Aligned_cols=94 Identities=16% Similarity=0.106 Sum_probs=55.9
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCCH----HH
Q 036072 470 TYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPT--IHTYNMIMKSYFQTGNYEMGRKVWDEMIRR---GCCPDD----NS 540 (631)
Q Consensus 470 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~---g~~p~~----~t 540 (631)
.+..+...|++.|+.+.|.+.|.++.+....+. ...+-.+|+.....+++..+.....+.... |-.++. ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 456666777777777777777777776543333 344566677777777777777766655432 211111 12
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHH
Q 036072 541 YTVLIGGLISQDRSGEAYKYLEEML 565 (631)
Q Consensus 541 ~~~li~~~~~~g~~~~A~~ll~~m~ 565 (631)
|..|. +...+++.+|-+.|-+..
T Consensus 118 ~~gL~--~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEGLA--NLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHH--HHHhchHHHHHHHHHccC
Confidence 22222 234678887777776554
|
This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome. |
| >PF13929 mRNA_stabil: mRNA stabilisation | Back alignment and domain information |
|---|
Probab=86.11 E-value=26 Score=34.75 Aligned_cols=135 Identities=5% Similarity=0.077 Sum_probs=90.1
Q ss_pred cCChhHHHHHHHHHHHC-CC-CCHHHHHHHHHHHHH-ccC-HHHHHHHHHHHHh-CCCCcCHHHHHHHHHHHHcCCChHH
Q 036072 258 ARQFETMVSMLEEMGEK-GL-LSMETFKIAMNAFAA-AKE-RKKAVAIFELMNK-YKFKAGVDTINCLLENLGRSKLPKE 332 (631)
Q Consensus 258 ~g~~~~A~~l~~~m~~~-g~-~~~~~~~~li~~~~~-~g~-~~~A~~v~~~m~~-~g~~~~~~~~~~Ll~~~~~~g~~~~ 332 (631)
+..+.+|+.+|+..... .+ .+.++...+++.... .+. ...--++.+-+.. .+-.++..+...++..+++.+++.+
T Consensus 141 N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~~L~~~~dW~k 220 (292)
T PF13929_consen 141 NKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILEILAESRDWNK 220 (292)
T ss_pred hHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHHHHHhcccHHH
Confidence 34466777777744332 23 477788888888776 222 2222334444433 3457888888899999999999999
Q ss_pred HHHHHHHHhcc--cCCChhhHHHHHHHHHhcCCHHHHHHHHHH-----HHHcCCCCCHHHHHHHHHH
Q 036072 333 AQLLFDKLKHR--FTPNLTTYTVLLGGWCRVKNLMEAGRVWNE-----MIDKGFKPDVVAHNIMLEG 392 (631)
Q Consensus 333 A~~l~~~m~~~--~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~-----m~~~g~~p~~~ty~~li~~ 392 (631)
-.++++..... ..-|...|..+|..-.+.|+..-+.++.++ ++..|+..+...-..+-..
T Consensus 221 l~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~~GhLLwikR~~V~v~~~L~~~L~~L 287 (292)
T PF13929_consen 221 LFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIIDDGHLLWIKRNNVDVTDELRSQLSEL 287 (292)
T ss_pred HHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhhCCCeEEeeecCCcCCHHHHHHHHHH
Confidence 99988886543 556788899999999999998877776654 3344555555554444433
|
|
| >PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi | Back alignment and domain information |
|---|
Probab=85.70 E-value=68 Score=36.17 Aligned_cols=182 Identities=12% Similarity=0.043 Sum_probs=109.7
Q ss_pred HHHHHHHhhcCCCCCCC--HHHHHHHHHHHH-hcCChhHHHHHHHHHHHCC----CCC--HHHHHHHHHHHHHccCHHHH
Q 036072 228 AFRFFCWAGDKPGFAHN--SRTYNSMMSILG-RARQFETMVSMLEEMGEKG----LLS--METFKIAMNAFAAAKERKKA 298 (631)
Q Consensus 228 A~~~f~~~~~~~g~~p~--~~~y~~li~~~~-~~g~~~~A~~l~~~m~~~g----~~~--~~~~~~li~~~~~~g~~~~A 298 (631)
|++-++.+.++....|. ..++-.+...|. ...+++.|+..+++..... ..+ -.....++..+.+.+... |
T Consensus 40 ai~CL~~~~~~~~l~p~~ea~~~l~la~iL~~eT~n~~~Ae~~L~k~~~l~~~~~~~d~k~~~~~ll~~i~~~~~~~~-a 118 (608)
T PF10345_consen 40 AIKCLEAVLKQFKLSPRQEARVRLRLASILLEETENLDLAETYLEKAILLCERHRLTDLKFRCQFLLARIYFKTNPKA-A 118 (608)
T ss_pred HHHHHHHHhccCCCCHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHhcCHHH-H
Confidence 66666666555555553 445666777776 5688999999998764322 122 224445667777776666 8
Q ss_pred HHHHHHHHhCC----CCcCHHHHHHH-HHHHHcCCChHHHHHHHHHHhcc----cCCChhhHHHHHHHHH--hcCCHHHH
Q 036072 299 VAIFELMNKYK----FKAGVDTINCL-LENLGRSKLPKEAQLLFDKLKHR----FTPNLTTYTVLLGGWC--RVKNLMEA 367 (631)
Q Consensus 299 ~~v~~~m~~~g----~~~~~~~~~~L-l~~~~~~g~~~~A~~l~~~m~~~----~~p~~~~y~~Li~~~~--~~g~~~~A 367 (631)
....+..++.- ..+-...|..+ +..+...++...|.+.++.+... ..+-..++-.++.+.. +.+..+++
T Consensus 119 ~~~l~~~I~~~~~~~~~~w~~~frll~~~l~~~~~d~~~Al~~L~~~~~~a~~~~d~~~~v~~~l~~~~l~l~~~~~~d~ 198 (608)
T PF10345_consen 119 LKNLDKAIEDSETYGHSAWYYAFRLLKIQLALQHKDYNAALENLQSIAQLANQRGDPAVFVLASLSEALLHLRRGSPDDV 198 (608)
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhcCCCchhH
Confidence 88888776542 11222333333 33333447999999999887542 3344445555555544 34556777
Q ss_pred HHHHHHHHHcCC---------CCCHHHHHHHHHHHH--HcCCHHHHHHHHHHHH
Q 036072 368 GRVWNEMIDKGF---------KPDVVAHNIMLEGLL--KIGKRSDAIKLFEVMK 410 (631)
Q Consensus 368 ~~l~~~m~~~g~---------~p~~~ty~~li~~~~--~~g~~~~A~~ll~~m~ 410 (631)
.+.++.+..... .|-..+|..+++.++ ..|+++.+.+.++++.
T Consensus 199 ~~~l~~~~~~~~~~q~~~~~~~~qL~~~~lll~l~~~l~~~~~~~~~~~L~~lq 252 (608)
T PF10345_consen 199 LELLQRAIAQARSLQLDPSVHIPQLKALFLLLDLCCSLQQGDVKNSKQKLKQLQ 252 (608)
T ss_pred HHHHHHHHHHHhhcccCCCCCcHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 777777743221 345667777777665 4677767776666554
|
It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 []. |
| >PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex | Back alignment and domain information |
|---|
Probab=85.37 E-value=70 Score=36.05 Aligned_cols=64 Identities=11% Similarity=0.165 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccC-------HHHHHHHHHHHHhCC
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKE-------RKKAVAIFELMNKYK 309 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~-------~~~A~~v~~~m~~~g 309 (631)
..+|. +|=.|.|+|++++|.++..+....-......|...+..|....+ .++...-|+...+..
T Consensus 112 ~p~Wa-~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~ 182 (613)
T PF04097_consen 112 DPIWA-LIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNS 182 (613)
T ss_dssp EEHHH-HHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-
T ss_pred CccHH-HHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCC
Confidence 34453 66678899999999999966655444444567777777776532 235555566665543
|
It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A. |
| >KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport] | Back alignment and domain information |
|---|
Probab=85.33 E-value=76 Score=36.39 Aligned_cols=35 Identities=9% Similarity=-0.046 Sum_probs=19.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 036072 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDR 553 (631)
Q Consensus 519 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 553 (631)
...+...++-....-..-+...+|.++..|++..+
T Consensus 609 ~~~~i~yl~f~~~~l~~~~~~ihn~ll~lya~~~~ 643 (911)
T KOG2034|consen 609 ENQAIRYLEFCIEVLGMTNPAIHNSLLHLYAKHER 643 (911)
T ss_pred HHHHHHHHHHHHHhccCcCHHHHHHHHHHhhcCCc
Confidence 34444544444433223477788888877776443
|
|
| >COG0457 NrfG FOG: TPR repeat [General function prediction only] | Back alignment and domain information |
|---|
Probab=84.93 E-value=31 Score=31.64 Aligned_cols=228 Identities=18% Similarity=0.090 Sum_probs=155.7
Q ss_pred cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHH
Q 036072 361 VKNLMEAGRVWNEMIDKGFK-PDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCL 439 (631)
Q Consensus 361 ~g~~~~A~~l~~~m~~~g~~-p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~l 439 (631)
.+....+...+......... .....+......+...+++..+...+.........+. ....+..+
T Consensus 36 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------------~~~~~~~~ 101 (291)
T COG0457 36 LGELAEALELLEEALELLPNSDLAGLLLLLALALLKLGRLEEALELLEKALELELLPN--------------LAEALLNL 101 (291)
T ss_pred HhhHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccc--------------hHHHHHHH
Confidence 45556666666666654322 1356777888888899999999998887765301111 22334445
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-HHHhcCChhHHHHHHHHHHHCCC--CCCHHHHHHHHHHHHHc
Q 036072 440 ITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK-LMKIQKMPDEAVRIYKEMVRSGF--KPTIHTYNMIMKSYFQT 516 (631)
Q Consensus 440 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~-~~~~~g~~~~A~~l~~~m~~~g~--~p~~~t~~~Li~~~~~~ 516 (631)
...+...+.+..+.+.+.........+ ......... .+...|+++.|...+.+...... ......+......+...
T Consensus 102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 180 (291)
T COG0457 102 GLLLEALGKYEEALELLEKALALDPDP-DLAEALLALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEAL 180 (291)
T ss_pred HHHHHHHhhHHHHHHHHHHHHcCCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHh
Confidence 556666677899999999888754443 222222333 78899999999999999866321 12344455555557788
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 036072 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELA 596 (631)
Q Consensus 517 g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~ 596 (631)
++.+.+...+..............+..+...+...++.+.|...+......... ....+..+...+...|..+.+...+
T Consensus 181 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 259 (291)
T COG0457 181 GRYEEALELLEKALKLNPDDDAEALLNLGLLYLKLGKYEEALEYYEKALELDPD-NAEALYNLALLLLELGRYEEALEAL 259 (291)
T ss_pred cCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHcccHHHHHHHHHHHHhhCcc-cHHHHhhHHHHHHHcCCHHHHHHHH
Confidence 999999999999987532214677888888889999999999999999876322 2445556666666777789998888
Q ss_pred HHHHhcCC
Q 036072 597 QKMRFSGK 604 (631)
Q Consensus 597 ~~m~~~g~ 604 (631)
.+......
T Consensus 260 ~~~~~~~~ 267 (291)
T COG0457 260 EKALELDP 267 (291)
T ss_pred HHHHHhCc
Confidence 87765543
|
|
| >PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia | Back alignment and domain information |
|---|
Probab=84.61 E-value=30 Score=31.16 Aligned_cols=53 Identities=17% Similarity=-0.024 Sum_probs=26.4
Q ss_pred HcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036072 325 GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK 377 (631)
Q Consensus 325 ~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~ 377 (631)
.+.++.+.++.++..+.---+-....-..-...+...|+|.+|..+|+++.+.
T Consensus 21 l~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~ 73 (160)
T PF09613_consen 21 LRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEER 73 (160)
T ss_pred HccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhcc
Confidence 34456666666666654321111111111223345666677777777666554
|
|
| >KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms] | Back alignment and domain information |
|---|
Probab=83.81 E-value=77 Score=35.23 Aligned_cols=154 Identities=14% Similarity=0.089 Sum_probs=76.7
Q ss_pred HHhcCChhHHHHHHHHHHH-------CCCCCHHHHHHHHHHHHHcc-----CHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 036072 255 LGRARQFETMVSMLEEMGE-------KGLLSMETFKIAMNAFAAAK-----ERKKAVAIFELMNKYKFKAGVDTINCLLE 322 (631)
Q Consensus 255 ~~~~g~~~~A~~l~~~m~~-------~g~~~~~~~~~li~~~~~~g-----~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~ 322 (631)
++..++++.|...|+.+.+ .| .+....-+..+|.+.. +.+.|..++...-+.| .|+...+-..+.
T Consensus 259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~~--~~~a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~g-~~~a~~~lg~~~ 335 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAESFKKAATKG--LPPAQYGLGRLYLQGLGVEKIDYEKALKLYTKAAELG-NPDAQYLLGVLY 335 (552)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhc--CCccccHHHHHHhcCCCCccccHHHHHHHHHHHHhcC-CchHHHHHHHHH
Confidence 4456677777777777765 33 2223444555555432 5566777777777766 344444333333
Q ss_pred HHHc-CCChHHHHHHHHHHhcccCCChhhHHHHHHHHH--hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 036072 323 NLGR-SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWC--RVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399 (631)
Q Consensus 323 ~~~~-~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~--~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~ 399 (631)
.... ..+...|.++|...-....+....+.+++.... -..+...|..++....+.| .|-..--...+..+.. +++
T Consensus 336 ~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~ 413 (552)
T KOG1550|consen 336 ETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRY 413 (552)
T ss_pred HcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccc
Confidence 3322 245567777777655432222222222221111 2236667777777777665 2221111222222333 555
Q ss_pred HHHHHHHHHHHHcC
Q 036072 400 SDAIKLFEVMKAKG 413 (631)
Q Consensus 400 ~~A~~ll~~m~~~g 413 (631)
+.+.-.+..+.+.|
T Consensus 414 ~~~~~~~~~~a~~g 427 (552)
T KOG1550|consen 414 DTALALYLYLAELG 427 (552)
T ss_pred cHHHHHHHHHHHhh
Confidence 55555555555544
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=83.04 E-value=2.8 Score=27.03 Aligned_cols=23 Identities=22% Similarity=0.105 Sum_probs=10.7
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Q 036072 541 YTVLIGGLISQDRSGEAYKYLEE 563 (631)
Q Consensus 541 ~~~li~~~~~~g~~~~A~~ll~~ 563 (631)
|..|...|.+.|++++|++++++
T Consensus 2 l~~Lg~~~~~~g~~~~Ai~~y~~ 24 (36)
T PF13176_consen 2 LNNLGRIYRQQGDYEKAIEYYEQ 24 (36)
T ss_dssp HHHHHHHHHHCT-HHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHH
Confidence 34444445555555555555544
|
|
| >PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A | Back alignment and domain information |
|---|
Probab=82.82 E-value=2.9 Score=27.00 Aligned_cols=26 Identities=23% Similarity=0.479 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036072 505 TYNMIMKSYFQTGNYEMGRKVWDEMI 530 (631)
Q Consensus 505 t~~~Li~~~~~~g~~~~A~~~~~~m~ 530 (631)
+|+.|...|.+.|++++|+.+|++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46778888888888888888888754
|
|
| >COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only] | Back alignment and domain information |
|---|
Probab=81.83 E-value=8 Score=36.49 Aligned_cols=77 Identities=13% Similarity=0.127 Sum_probs=56.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCC--CCcCHHHHHHHHHH
Q 036072 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYK--FKAGVDTINCLLEN 323 (631)
Q Consensus 247 ~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g--~~~~~~~~~~Ll~~ 323 (631)
|.+..++.+.+.++..+|+...++-.+..+.+...-..+++.++-.|++++|..-++..-+.. ..+...+|..+|++
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir~ 81 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIRC 81 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHHH
Confidence 345667778888888888888888887777777788888888888888888887777666542 23445566666654
|
|
| >KOG4570 consensus Uncharacterized conserved protein [Function unknown] | Back alignment and domain information |
|---|
Probab=81.51 E-value=5.3 Score=39.68 Aligned_cols=102 Identities=13% Similarity=0.119 Sum_probs=71.7
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC---CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHH
Q 036072 240 GFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL---LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDT 316 (631)
Q Consensus 240 g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~---~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~ 316 (631)
|...+..+...++.......+++++..++-+++..-- ....+-.+.++.+. .-+.++++.++..-++.|+-||.++
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccchhh
Confidence 5555666677777777777788888888777764322 11112223333332 3356788888888888999999999
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHhc
Q 036072 317 INCLLENLGRSKLPKEAQLLFDKLKH 342 (631)
Q Consensus 317 ~~~Ll~~~~~~g~~~~A~~l~~~m~~ 342 (631)
++.+|+.+.+.+++.+|..+.-.|..
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~ 163 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMM 163 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHH
Confidence 99999999999999888887777654
|
|
| >KOG4234 consensus TPR repeat-containing protein [General function prediction only] | Back alignment and domain information |
|---|
Probab=80.13 E-value=17 Score=33.98 Aligned_cols=90 Identities=14% Similarity=0.089 Sum_probs=58.6
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 036072 477 LMKIQKMPDEAVRIYKEMVRSGFKPT-----IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQ 551 (631)
Q Consensus 477 ~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 551 (631)
-+.++|++++|..-|...++.- ++. ...|..-..++.+.+.++.|+.-..+.++.+.. ......--..+|.+.
T Consensus 104 ~~F~ngdyeeA~skY~~Ale~c-p~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pt-y~kAl~RRAeayek~ 181 (271)
T KOG4234|consen 104 ELFKNGDYEEANSKYQEALESC-PSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPT-YEKALERRAEAYEKM 181 (271)
T ss_pred HhhhcccHHHHHHHHHHHHHhC-ccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCch-hHHHHHHHHHHHHhh
Confidence 3667888888888888888752 221 233444455667788888888777777765322 122222223467777
Q ss_pred CCHHHHHHHHHHHHHCC
Q 036072 552 DRSGEAYKYLEEMLEKG 568 (631)
Q Consensus 552 g~~~~A~~ll~~m~~~g 568 (631)
..+++|++=|+++.+..
T Consensus 182 ek~eealeDyKki~E~d 198 (271)
T KOG4234|consen 182 EKYEEALEDYKKILESD 198 (271)
T ss_pred hhHHHHHHHHHHHHHhC
Confidence 88888888888888753
|
|
Homologous Structure Templates
Structure Templates Detected by BLAST
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST
Original result of RPS-BLAST against PDB70 database
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 74.1 bits (180), Expect = 7e-14
Identities = 25/166 (15%), Positives = 55/166 (33%), Gaps = 4/166 (2%)
Query: 445 NRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRI---YKEMVRSGFKP 501
+ +D+ + + A K + A + + +
Sbjct: 104 GKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLL 163
Query: 502 TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAY-KY 560
T+ YN +M + + G ++ V + G PD SY + + QD+ +
Sbjct: 164 TLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCMGRQDQDAGTIERC 223
Query: 561 LEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFE 606
LE+M ++G+K L ++ RA + ++ +
Sbjct: 224 LEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLP 269
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 72.5 bits (176), Expect = 2e-13
Identities = 27/260 (10%), Positives = 69/260 (26%), Gaps = 21/260 (8%)
Query: 278 SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLF 337
E + A ++ + + + + A L
Sbjct: 91 WEEQLARLLQEAPGKLSLDVEQAPSGQHSQAQLSGQQQRLLAFFKCCLLTDQLPLAHHLL 150
Query: 338 DKL----KHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGL 393
+ R L Y ++ GW R E V + D G PD++++ L+ +
Sbjct: 151 VVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAALQCM 210
Query: 394 LKIGKRSDAI-KLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIV 452
+ + + I + E M +G +++ + +
Sbjct: 211 GRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVH-------------- 256
Query: 453 YDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKS 512
+ P + + L++ + + +++ + +M + S
Sbjct: 257 -KVKPTFSLPPQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQ-LHMELAS 314
Query: 513 YFQTGNYEMGRKVWDEMIRR 532
+ E E+
Sbjct: 315 RVCVVSVEKPTLPSKEVKHA 334
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} Length = 1134 | Back alignment and structure |
|---|
Score = 51.4 bits (121), Expect = 8e-07
Identities = 27/230 (11%), Positives = 61/230 (26%), Gaps = 39/230 (16%)
Query: 238 KPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG----LLSMETFKIAMNAFAAAK 293
+ + + + Q +L + LL+++ + M +A
Sbjct: 120 QAQLSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQG 179
Query: 294 ERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTV 353
K+ V + ++ AG+ TP+L +Y
Sbjct: 180 AFKELVYVLFMVK----DAGL------------------------------TPDLLSYAA 205
Query: 354 LLGGWCRVKNLMEA-GRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412
L R R +M +G K + ++L + K+
Sbjct: 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLP 265
Query: 413 GPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEER 462
P + + ++ ++ V + + L E+ R
Sbjct: 266 PQLPPPVNTSKLLRDVYAKDGRVSYPKLHLPLKTLQCLFEKQLHMELASR 315
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 55.2 bits (132), Expect = 6e-08
Identities = 72/486 (14%), Positives = 152/486 (31%), Gaps = 132/486 (27%)
Query: 8 WSRISI-LLGHSLDSQSHYSTLSRSYGNGYGQLYSTTT-----ELLSLNQ--RQRRGAKR 59
S I S+ ++ + R Y + Q+++ L L Q + R AK
Sbjct: 95 MSPIKTEQRQPSMMTRMYIEQRDRLYNDN--QVFAKYNVSRLQPYLKLRQALLELRPAKN 152
Query: 60 V--HGDGGA-KCSRGSTLSLSRLLHYSSYCSLYR-------SHCQVPCLLPHSSSLHSLQ 109
V G G+ K + ++L L Y C + +C P + L LQ
Sbjct: 153 VLIDGVLGSGK----TWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETV-----LEMLQ 203
Query: 110 KVLLNKSTNVVASSLTNHNLATNILDSNCV--------NYRNVSSVTDDNQDS------D 155
K+L N + S + N+ I Y N V + Q++ +
Sbjct: 204 KLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFN 263
Query: 156 GEC------------D--GNNSESEITSVSYKSTADPREIERVC-KVID-ELFSLDRNME 199
C D + + I+ + T P E++ + K +D L R E
Sbjct: 264 LSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPR--E 321
Query: 200 AVLDECGIN-LSHNLVVDVL-------ERFRHARRPAFRFF---CWAGDKPG-------- 240
N +++ + + + ++H +P
Sbjct: 322 V----LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDR 377
Query: 241 ---FAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLL----SMETFKIAMNAFAAAK 293
F ++ ++S++ ++ ++ ++ + L+ T I
Sbjct: 378 LSVFPPSAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKESTISIPSIYLELKV 437
Query: 294 ERKKAVAIF-ELMNKYKFKAGVDTINCL---------------LENLGRSKLPKEAQLLF 337
+ + A+ +++ Y D+ + + L+N+ + +++F
Sbjct: 438 KLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVF 497
Query: 338 -D------KLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMID-KGFKPDVVAHNIM 389
D K++H T W +G + N + K +KP + ++
Sbjct: 498 LDFRFLEQKIRHDSTA-----------WN------ASGSILNTLQQLKFYKPYICDNDPK 540
Query: 390 LEGLLK 395
E L+
Sbjct: 541 YERLVN 546
|
| >1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 | Back alignment and structure |
|---|
Score = 53.3 bits (127), Expect = 2e-07
Identities = 80/599 (13%), Positives = 153/599 (25%), Gaps = 198/599 (33%)
Query: 141 YRNVSSVTDDNQDSDGECDGNNSESEITSVSYKSTADPREIERVCKVIDELFSLDRNMEA 200
Y+++ SV +D + +C + + S+ K EI+ + D + R
Sbjct: 18 YKDILSVFEDAFVDNFDC--KDVQDMPKSILSK-----EEIDHIIMSKDAVSGTLRLFWT 70
Query: 201 VLDECGINLSHNLVVDVLERFRHARRPAFRFFC--WAGDKPGFAHNSRTYNSMMSILGRA 258
+L + + V +VL R ++F ++ + +R Y L
Sbjct: 71 LLSK-QEEMVQKFVEEVL-------RINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYND 122
Query: 259 RQ-FETM-VSMLEEMGE--KGLLSMETFKI----AMNAFAAAKERKKAVAIFELMNKYKF 310
Q F VS L+ + + LL + K + K ++ YK
Sbjct: 123 NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSG------KTWVALDVCLSYKV 176
Query: 311 KAGVDTINCLLE------NLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNL 364
+ C ++ NL P+ + KL ++ PN
Sbjct: 177 Q-------CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPN----------------- 212
Query: 365 MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424
W D + H+I ++ +K+K P ++
Sbjct: 213 ------WTSRSDHSSNIKLRIHSI-----------QAELRRL--LKSK---PYENCLLVL 250
Query: 425 -------IWK-F---CK-----QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDG 468
W F CK + V L +D L E
Sbjct: 251 LNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDE-------V 303
Query: 469 LTYNALIKLMKIQKMPDEAVRI-------YKEMVRSGFKPTIHTYNMI------------ 509
+ + Q +P E + E +R G T + +
Sbjct: 304 KSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLA-TWDNWKHVNCDKLTTIIESS 362
Query: 510 --------MKSYFQ------------TGNYEMGRKVW------------DEMIRRGCCP- 536
+ F T + +W +++ +
Sbjct: 363 LNVLEPAEYRKMFDRLSVFPPSAHIPTILLSL---IWFDVIKSDVMVVVNKLHKYSLVEK 419
Query: 537 DDNSYTVLIGGL---ISQDRSG---------EAYKYLEEMLEKGMKAPVLD---YNKFAA 581
T+ I + + + Y + + P LD Y+
Sbjct: 420 QPKESTISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSDDLIPPYLDQYFYSHIGH 479
Query: 582 DLSRAGRSYVLDE----------LAQKMRFSG-----KFEVSNVLARWAETTKNRVYRK 625
L + L QK+R + N L + + Y+
Sbjct: 480 HLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL------KFYKP 532
|
Structure Templates Detected by HHsearch
Original result of HHsearch against PDB70 database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 631 | |||
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.97 | |
| 2xpi_A | 597 | Anaphase-promoting complex subunit CUT9; cell cycl | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.97 | |
| 4g26_A | 501 | Pentatricopeptide repeat-containing protein AT2G3 | 99.96 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.94 | |
| 1w3b_A | 388 | UDP-N-acetylglucosamine--peptide N-acetylglucosami | 99.92 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.89 | |
| 2y4t_A | 450 | DNAJ homolog subfamily C member 3; chaperone, endo | 99.87 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.86 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.84 | |
| 2gw1_A | 514 | Mitochondrial precursor proteins import receptor; | 99.82 | |
| 3ieg_A | 359 | DNAJ homolog subfamily C member 3; TPR motif, chap | 99.82 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.81 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.78 | |
| 3hym_B | 330 | Cell division cycle protein 16 homolog; APC, anaph | 99.76 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.75 | |
| 1fch_A | 368 | Peroxisomal targeting signal 1 receptor; protein-p | 99.73 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.72 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.71 | |
| 3fp2_A | 537 | TPR repeat-containing protein YHR117W; TOM71, mito | 99.71 | |
| 4eqf_A | 365 | PEX5-related protein; accessory protein, tetratric | 99.71 | |
| 3spa_A | 1134 | Mtrpol, DNA-directed RNA polymerase, mitochondrial | 99.7 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.7 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.69 | |
| 3cv0_A | 327 | Peroxisome targeting signal 1 receptor PEX5; TPR m | 99.69 | |
| 2xm6_A | 490 | Protein corresponding to locus C5321 from CFT073 s | 99.66 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.66 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.63 | |
| 3mkr_A | 291 | Coatomer subunit epsilon; tetratricopeptide repeat | 99.62 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.62 | |
| 1b89_A | 449 | Protein (clathrin heavy chain); triskelion, coated | 99.6 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.56 | |
| 2ooe_A | 530 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.55 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.53 | |
| 3uq3_A | 258 | Heat shock protein STI1; HSP90, peptide binding, c | 99.53 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.5 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.48 | |
| 2pl2_A | 217 | Hypothetical conserved protein TTC0263; TPR, prote | 99.47 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.47 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.47 | |
| 1ouv_A | 273 | Conserved hypothetical secreted protein; TPR repea | 99.46 | |
| 2ho1_A | 252 | Type 4 fimbrial biogenesis protein PILF; type IV p | 99.46 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.46 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.45 | |
| 4g1t_A | 472 | Interferon-induced protein with tetratricopeptide | 99.44 | |
| 2vq2_A | 225 | PILW, putative fimbrial biogenesis and twitching m | 99.44 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.43 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.43 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.43 | |
| 3u4t_A | 272 | TPR repeat-containing protein; structural genomics | 99.42 | |
| 1xi4_A | 1630 | Clathrin heavy chain; alpha-ZIG-ZAG, beta-propelle | 99.42 | |
| 2q7f_A | 243 | YRRB protein; TPR, protein binding; 2.49A {Bacillu | 99.42 | |
| 1xnf_A | 275 | Lipoprotein NLPI; TPR, tetratricopeptide, structur | 99.41 | |
| 2h6f_A | 382 | Protein farnesyltransferase/geranylgeranyltransfer | 99.39 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.39 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.39 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.38 | |
| 4a1s_A | 411 | PINS, partner of inscuteable; cell cycle, LGN, mit | 99.37 | |
| 3ro2_A | 338 | PINS homolog, G-protein-signaling modulator 2; TPR | 99.35 | |
| 3sf4_A | 406 | G-protein-signaling modulator 2; tetratricopeptide | 99.34 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.3 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.28 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.28 | |
| 2ond_A | 308 | Cleavage stimulation factor 77 kDa subunit; HAT do | 99.26 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.25 | |
| 3nf1_A | 311 | KLC 1, kinesin light chain 1; TPR, structural geno | 99.24 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.24 | |
| 3vtx_A | 184 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.23 | |
| 3ulq_A | 383 | Response regulator aspartate phosphatase F; tetrat | 99.22 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.21 | |
| 3e4b_A | 452 | ALGK; tetratricopeptide repeat, superhelix, algina | 99.21 | |
| 4abn_A | 474 | Tetratricopeptide repeat protein 5; P53 cofactor, | 99.19 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.17 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 99.16 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.16 | |
| 1hz4_A | 373 | MALT regulatory protein; two-helix bundles, helix | 99.13 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.12 | |
| 3as5_A | 186 | MAMA; tetratricopeptide repeats (TPR) containing p | 99.11 | |
| 3q15_A | 378 | PSP28, response regulator aspartate phosphatase H; | 99.11 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.02 | |
| 4gyw_A | 723 | UDP-N-acetylglucosamine--peptide N- acetylglucosam | 99.02 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 99.0 | |
| 3edt_B | 283 | KLC 2, kinesin light chain 2; superhelical, struct | 98.99 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 98.96 | |
| 4i17_A | 228 | Hypothetical protein; TPR repeats protein, structu | 98.96 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.93 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.89 | |
| 4e6h_A | 679 | MRNA 3'-END-processing protein RNA14; HAT domain, | 98.87 | |
| 2fo7_A | 136 | Synthetic consensus TPR protein; tetratricopeptide | 98.84 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.84 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.75 | |
| 3qky_A | 261 | Outer membrane assembly lipoprotein YFIO; membrane | 98.73 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.72 | |
| 1qqe_A | 292 | Vesicular transport protein SEC17; helix-turn-heli | 98.72 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.65 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.65 | |
| 3mv2_B | 310 | Coatomer subunit epsilon; vesicular membrane coat | 98.64 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.63 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.63 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.62 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.6 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.59 | |
| 2yhc_A | 225 | BAMD, UPF0169 lipoprotein YFIO; essential BAM comp | 98.57 | |
| 3rjv_A | 212 | Putative SEL1 repeat protein; alpha-alpha superhel | 98.57 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.55 | |
| 3urz_A | 208 | Uncharacterized protein; tetratricopeptide repeats | 98.55 | |
| 3dra_A | 306 | Protein farnesyltransferase/geranylgeranyltransfer | 98.54 | |
| 2vsy_A | 568 | XCC0866; transferase, glycosyl transferase, GT-B, | 98.54 | |
| 2pzi_A | 681 | Probable serine/threonine-protein kinase PKNG; ATP | 98.53 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.53 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.52 | |
| 2r5s_A | 176 | Uncharacterized protein VP0806; APC090868.1, vibri | 98.51 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.49 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.49 | |
| 2uy1_A | 493 | Cleavage stimulation factor 77; RNA-binding protei | 98.49 | |
| 3qou_A | 287 | Protein YBBN; thioredoxin-like fold, tetratricopep | 98.47 | |
| 3u3w_A | 293 | Transcriptional activator PLCR protein; ternary co | 98.46 | |
| 4ga2_A | 150 | E3 SUMO-protein ligase ranbp2; TPR motif, nuclear | 98.46 | |
| 2qfc_A | 293 | PLCR protein; TPR, HTH, transcription regulation; | 98.45 | |
| 2ifu_A | 307 | Gamma-SNAP; membrane fusion, snare complex disasse | 98.44 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.43 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.4 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.38 | |
| 1hh8_A | 213 | P67PHOX, NCF-2, neutrophil cytosol factor 2; cell | 98.35 | |
| 1a17_A | 166 | Serine/threonine protein phosphatase 5; hydrolase, | 98.33 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.33 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.32 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.29 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.29 | |
| 1na0_A | 125 | Designed protein CTPR3; de novo protein; HET: IPT; | 98.28 | |
| 3q7a_A | 349 | Farnesyltransferase alpha subunit; protein prenylt | 98.27 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.26 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.25 | |
| 2vyi_A | 131 | SGTA protein; chaperone, TPR repeat, phosphoprotei | 98.25 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.21 | |
| 3gw4_A | 203 | Uncharacterized protein; structural genomics, PSI- | 98.21 | |
| 4gco_A | 126 | Protein STI-1; structural genomics, PSI-biology, m | 98.21 | |
| 2lni_A | 133 | Stress-induced-phosphoprotein 1; structural genomi | 98.17 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.14 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.14 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.13 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.13 | |
| 2vgx_A | 148 | Chaperone SYCD; alternative dimer assembly, tetrat | 98.13 | |
| 1p5q_A | 336 | FKBP52, FK506-binding protein 4; isomerase; 2.80A | 98.12 | |
| 2e2e_A | 177 | Formate-dependent nitrite reductase complex NRFG; | 98.1 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 98.07 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.07 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.06 | |
| 3gyz_A | 151 | Chaperone protein IPGC; asymmetric homodimer, tetr | 98.06 | |
| 1elw_A | 118 | TPR1-domain of HOP; HOP, TPR-domain, peptide-compl | 98.04 | |
| 2c2l_A | 281 | CHIP, carboxy terminus of HSP70-interacting protei | 98.03 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.03 | |
| 4f3v_A | 282 | ESX-1 secretion system protein ECCA1; tetratricope | 98.02 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 98.02 | |
| 2xcb_A | 142 | PCRH, regulatory protein PCRH; protein transport, | 98.0 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 98.0 | |
| 2fbn_A | 198 | 70 kDa peptidylprolyl isomerase, putative; sulfur | 98.0 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.97 | |
| 3sz7_A | 164 | HSC70 cochaperone (SGT); TPR domain, GET4, GET5, G | 97.97 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.96 | |
| 3upv_A | 126 | Heat shock protein STI1; TPR-fold, adaptor protein | 97.94 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.91 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.91 | |
| 1elr_A | 131 | TPR2A-domain of HOP; HOP, TPR-domain, peptide-comp | 97.88 | |
| 2dba_A | 148 | Smooth muscle cell associated protein-1, isoform 2 | 97.88 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.85 | |
| 3q49_B | 137 | STIP1 homology and U box-containing protein 1; E3 | 97.84 | |
| 2kck_A | 112 | TPR repeat; tetratricopeptide repeat, structural g | 97.83 | |
| 4b4t_Q | 434 | 26S proteasome regulatory subunit RPN6; hydrolase, | 97.81 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.79 | |
| 3ro3_A | 164 | PINS homolog, G-protein-signaling modulator 2; asy | 97.78 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.77 | |
| 4gcn_A | 127 | Protein STI-1; structural genomics, PSI-biology, m | 97.74 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.72 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.69 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.67 | |
| 3dss_A | 331 | Geranylgeranyl transferase type-2 subunit alpha; p | 97.65 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.65 | |
| 1wao_1 | 477 | Serine/threonine protein phosphatase 5; hydrolase, | 97.64 | |
| 1hxi_A | 121 | PEX5, peroxisome targeting signal 1 receptor PEX5; | 97.64 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.63 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.59 | |
| 2xev_A | 129 | YBGF; tetratricopeptide, alpha-helical, metal bind | 97.58 | |
| 1ihg_A | 370 | Cyclophilin 40; ppiase immunophilin tetratricopept | 97.56 | |
| 1kt0_A | 457 | FKBP51, 51 kDa FK506-binding protein; FKBP-like pp | 97.56 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.51 | |
| 3k9i_A | 117 | BH0479 protein; putative protein binding protein, | 97.48 | |
| 3rkv_A | 162 | Putative peptidylprolyl isomerase; structural geno | 97.46 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.39 | |
| 1klx_A | 138 | Cysteine rich protein B; structural genomics, heli | 97.38 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.27 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.26 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.23 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.22 | |
| 2if4_A | 338 | ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, | 97.19 | |
| 3n71_A | 490 | Histone lysine methyltransferase SMYD1; heart deve | 97.14 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.14 | |
| 1dce_A | 567 | Protein (RAB geranylgeranyltransferase alpha subun | 97.11 | |
| 2l6j_A | 111 | TPR repeat-containing protein associated with HSP; | 97.11 | |
| 2hr2_A | 159 | Hypothetical protein; alpha-alpha superhelix fold, | 97.09 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 97.01 | |
| 2kat_A | 115 | Uncharacterized protein; NESG, structure, structur | 96.93 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.91 | |
| 1na3_A | 91 | Designed protein CTPR2; de novo protein; HET: IPT; | 96.83 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.74 | |
| 3mkq_A | 814 | Coatomer beta'-subunit; beta-propeller, alpha-sole | 96.73 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.56 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.38 | |
| 1zu2_A | 158 | Mitochondrial import receptor subunit TOM20-3; TPR | 96.3 | |
| 3ma5_A | 100 | Tetratricopeptide repeat domain protein; NESG, str | 96.17 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 95.78 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 95.6 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 95.59 | |
| 3qww_A | 433 | SET and MYND domain-containing protein 2; methyltr | 95.49 | |
| 3qwp_A | 429 | SET and MYND domain-containing protein 3; SMYD3,SE | 95.44 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 95.39 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 95.18 | |
| 3ly7_A | 372 | Transcriptional activator CADC; alpha/beta domain, | 94.66 | |
| 2kc7_A | 99 | BFR218_protein; tetratricopeptide repeat, all-alph | 94.44 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.23 | |
| 1wy6_A | 172 | Hypothetical protein ST1625; helical repeat protei | 94.13 | |
| 3mkq_B | 177 | Coatomer subunit alpha; beta-propeller, alpha-sole | 94.03 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 93.32 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 93.08 | |
| 3bee_A | 93 | Putative YFRE protein; putaive YFRE protein, struc | 92.89 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 92.82 | |
| 2v5f_A | 104 | Prolyl 4-hydroxylase subunit alpha-1; endoplasmic | 92.44 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 92.31 | |
| 1pc2_A | 152 | Mitochondria fission protein; unknown function; NM | 91.92 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 91.79 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 90.59 | |
| 3u64_A | 301 | Protein TP_0956; tetratrico peptide repeat, protei | 90.5 | |
| 4h7y_A | 161 | Dual specificity protein kinase TTK; mitotic check | 90.28 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 89.98 | |
| 3txn_A | 394 | 26S proteasome regulatory complex subunit P42B; PC | 89.28 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 88.96 | |
| 1v54_E | 109 | Cytochrome C oxidase polypeptide VA; oxidoreductas | 88.85 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 88.02 | |
| 4gns_B | 754 | Protein CSD3, chitin biosynthesis protein CHS6; FN | 87.57 | |
| 4b4t_P | 445 | 26S proteasome regulatory subunit RPN5; hydrolase, | 87.34 | |
| 2wpv_A | 312 | GET4, UPF0363 protein YOR164C; golgi-ER traffickin | 87.23 | |
| 2ff4_A | 388 | Probable regulatory protein EMBR; winged-helix, te | 86.59 | |
| 1nzn_A | 126 | CGI-135 protein, fission protein FIS1P; TPR, unkno | 84.49 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 83.85 | |
| 2y69_E | 152 | Cytochrome C oxidase subunit 5A; electron transpor | 83.61 | |
| 4ady_A | 963 | RPN2, 26S proteasome regulatory subunit RPN2; prot | 83.56 | |
| 3lpz_A | 336 | GET4 (YOR164C homolog); protein targeting, tail-an | 80.22 | |
| 4fhn_B | 1139 | Nucleoporin NUP120; protein complex,structural pro | 80.21 |
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=1e-28 Score=274.85 Aligned_cols=385 Identities=7% Similarity=-0.053 Sum_probs=267.7
Q ss_pred CHHHHHHHHHhhccCc--hhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC------------
Q 036072 210 SHNLVVDVLERFRHAR--RPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKG------------ 275 (631)
Q Consensus 210 ~~~~~~~vl~~~~~~~--~~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g------------ 275 (631)
+...+..+...+...+ ..|.++|+.+.. ..++..+|+.++.+|.+.|++++|..+|+++....
T Consensus 116 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 192 (597)
T 2xpi_A 116 NPNDAFWLAQVYCCTGDYARAKCLLTKEDL---YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQ 192 (597)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHTCG---GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CC
T ss_pred CchHHHHHHHHHHHcCcHHHHHHHHHHHhc---cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCcccccccccccccc
Confidence 4444444444443332 337777765532 24567777777777777777777777777432221
Q ss_pred ---C-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHH--------------------------------
Q 036072 276 ---L-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINC-------------------------------- 319 (631)
Q Consensus 276 ---~-~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~-------------------------------- 319 (631)
. .+..+|+.++.+|.+.|++++|+++|+.|.+.+ +.+...+..
T Consensus 193 ~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 271 (597)
T 2xpi_A 193 DGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVD-AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFL 271 (597)
T ss_dssp CSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHH
T ss_pred ccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHH
Confidence 1 135677777777777777777777777777654 222222222
Q ss_pred ------HHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 036072 320 ------LLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGL 393 (631)
Q Consensus 320 ------Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~ 393 (631)
++..|.+.|++++|.++|+++.+. +++..+|+.++.+|.+.|++++|.++|+++.+.+. .+..+|+.++.+|
T Consensus 272 ~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~ 349 (597)
T 2xpi_A 272 RSLYMLKLNKTSHEDELRRAEDYLSSINGL-EKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASL 349 (597)
T ss_dssp HHHHHTTSCTTTTHHHHHHHHHHHHTSTTG-GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHH
T ss_pred HHHHHHHHHHHcCcchHHHHHHHHHHhhcC-CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHH
Confidence 244455666666666666666543 45666666667777777777777777766665532 2555666666666
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhc-------------------CHHHHHHHHHHHhccCCHHHHHH
Q 036072 394 LKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ-------------------NAAVYTCLITGFGNRRRMDIVYD 454 (631)
Q Consensus 394 ~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~-------------------~~~~~~~li~~~~~~g~~~~A~~ 454 (631)
.+.|++++|.++++++.+.. ..+..+++.+...|.+. +..+|+.++.+|.+.|++++|.+
T Consensus 350 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 428 (597)
T 2xpi_A 350 HESGEKNKLYLISNDLVDRH-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAIS 428 (597)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHH
Confidence 66666666666666666432 23444555554444432 56678888888888888999998
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--
Q 036072 455 LLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR-- 532 (631)
Q Consensus 455 l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~-- 532 (631)
+|+++.+.+. .+..+|+.++.+|.+.|++++|.++|+++.+.. +.+..+|+.++.+|.+.|++++|.++|+++.+.
T Consensus 429 ~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 506 (597)
T 2xpi_A 429 AYTTAARLFQ-GTHLPYLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVK 506 (597)
T ss_dssp HHHHHHHTTT-TCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhCc-cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhh
Confidence 8888887643 367888888888888888899998888888754 346788888888888888999998888888775
Q ss_pred --CCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 036072 533 --GCCPD--DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGK 604 (631)
Q Consensus 533 --g~~p~--~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 604 (631)
+..|+ ..+|..++.+|.+.|++++|.++++++.+.+ +.+..+|..++.+|.+.|++++|.++++++.+...
T Consensus 507 ~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 507 KTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp HSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred ccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 66777 7788888888888899999998888888765 44778888888888888999888888888876553
|
| >2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe} | Back alignment and structure |
|---|
Probab=99.97 E-value=3.3e-29 Score=278.88 Aligned_cols=382 Identities=9% Similarity=-0.029 Sum_probs=323.3
Q ss_pred HHHHHHHhhccCc--hhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Q 036072 213 LVVDVLERFRHAR--RPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFA 290 (631)
Q Consensus 213 ~~~~vl~~~~~~~--~~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~ 290 (631)
.+..++..+...+ +.|+.+|+.+. +..|+..+|..++.+|.+.|++++|..+|+.+... ..+..+++.++.+|.
T Consensus 86 ~~~~~~~~~~~~g~~~~A~~~~~~~~---~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~l~~~~~ 161 (597)
T 2xpi_A 86 YLRLWRHDALMQQQYKCAAFVGEKVL---DITGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY-NRSSACRYLAAFCLV 161 (597)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH---HHHCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG-GTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCchHHHHHHHHHH---hhCCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc-ccchhHHHHHHHHHH
Confidence 3444455443333 45888888775 34568899999999999999999999999988643 357889999999999
Q ss_pred HccCHHHHHHHHHHHHh-C--------------CCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHH-
Q 036072 291 AAKERKKAVAIFELMNK-Y--------------KFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVL- 354 (631)
Q Consensus 291 ~~g~~~~A~~v~~~m~~-~--------------g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~L- 354 (631)
+.|++++|+++|+++.. . +.+.+..+|+.++.+|.+.|++++|.++|+++.+..+.+...+..+
T Consensus 162 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~ 241 (597)
T 2xpi_A 162 KLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAKCYEAFDQLV 241 (597)
T ss_dssp HTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCchhhHHHHHHH
Confidence 99999999999995322 1 2344689999999999999999999999999976544444444433
Q ss_pred -------------------------------------HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 036072 355 -------------------------------------LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIG 397 (631)
Q Consensus 355 -------------------------------------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g 397 (631)
+..|.+.|++++|.++|+++.+. .++..+|+.++.+|.+.|
T Consensus 242 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g 319 (597)
T 2xpi_A 242 SNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRS 319 (597)
T ss_dssp HTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTT
T ss_pred HhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhc
Confidence 55667889999999999999876 579999999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhc-------------------CHHHHHHHHHHHhccCCHHHHHHHHHH
Q 036072 398 KRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ-------------------NAAVYTCLITGFGNRRRMDIVYDLLKE 458 (631)
Q Consensus 398 ~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~-------------------~~~~~~~li~~~~~~g~~~~A~~l~~~ 458 (631)
++++|.++|+++.+.+.. +..+++.++..+.+. +..+|+.++.+|.+.|++++|.++|++
T Consensus 320 ~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 398 (597)
T 2xpi_A 320 RFIDVLAITTKILEIDPY-NLDVYPLHLASLHESGEKNKLYLISNDLVDRHPEKAVTWLAVGIYYLCVNKISEARRYFSK 398 (597)
T ss_dssp CHHHHHHHHHHHHHHCTT-CCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 999999999999986533 566677776666543 678999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH
Q 036072 459 MEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD 538 (631)
Q Consensus 459 m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~ 538 (631)
+.+... .+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|+.++.+|.+.|++++|.++|+++.+.... +.
T Consensus 399 ~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~ 475 (597)
T 2xpi_A 399 SSTMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALFQY-DP 475 (597)
T ss_dssp HHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCC-CH
T ss_pred HHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-Ch
Confidence 987633 368899999999999999999999999999874 457899999999999999999999999999986443 78
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 036072 539 NSYTVLIGGLISQDRSGEAYKYLEEMLEK----GMKAP--VLDYNKFAADLSRAGRSYVLDELAQKMRFSGK 604 (631)
Q Consensus 539 ~t~~~li~~~~~~g~~~~A~~ll~~m~~~----g~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 604 (631)
.+|+.++..|.+.|++++|.++|+++.+. +..|+ ..+|..++.+|.+.|++++|.++++++...+.
T Consensus 476 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p 547 (597)
T 2xpi_A 476 LLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLST 547 (597)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSS
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999876 67787 78999999999999999999999999987653
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.97 E-value=4.2e-29 Score=270.32 Aligned_cols=213 Identities=15% Similarity=0.251 Sum_probs=163.8
Q ss_pred HHHHHHHHHcCCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhcc
Q 036072 368 GRVWNEMIDKGFKPDV-VAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNR 446 (631)
Q Consensus 368 ~~l~~~m~~~g~~p~~-~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~ 446 (631)
..+.+++.+.+..... ..++.+|.+|++.|++++|+++|++|.+.|+.||..|||+||.+|++... .....+.
T Consensus 10 e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~------~~~~~~~ 83 (501)
T 4g26_A 10 ENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEA------ATESSPN 83 (501)
T ss_dssp --------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCC------CSSSSCC
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCc------hhhhhhc
Confidence 3344444444433322 23455555555555555555555555555555555555554444433200 0001223
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 036072 447 RRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW 526 (631)
Q Consensus 447 g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~ 526 (631)
+.+++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.++|
T Consensus 84 ~~l~~A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~ 163 (501)
T 4g26_A 84 PGLSRGFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVD 163 (501)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHH
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc
Q 036072 527 DEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRA 586 (631)
Q Consensus 527 ~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~ 586 (631)
++|.+.|+.||..||++||.+|++.|+.++|.++|++|.+.|+.|+..||+.++..|+..
T Consensus 164 ~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 164 AHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred HHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999999999999999864
|
| >4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A | Back alignment and structure |
|---|
Probab=99.96 E-value=7.3e-29 Score=268.44 Aligned_cols=205 Identities=17% Similarity=0.155 Sum_probs=177.8
Q ss_pred HHHHHHHHHhcc-cCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC---------HH
Q 036072 332 EAQLLFDKLKHR-FTPN-LTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGK---------RS 400 (631)
Q Consensus 332 ~A~~l~~~m~~~-~~p~-~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~---------~~ 400 (631)
.++.+.++++++ .... ...++.+|++|++.|++++|+++|++|.+.|+.||..|||+||.+|++.+. ++
T Consensus 8 ~~e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~ 87 (501)
T 4g26_A 8 PSENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLS 87 (501)
T ss_dssp ----------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHH
T ss_pred hHHHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHH
Confidence 345555666543 3322 346888999999999999999999999999999999999999999987664 68
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 036072 401 DAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKI 480 (631)
Q Consensus 401 ~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~ 480 (631)
+|.++|++|.+.|+.||..||+++ |.+|++.|++++|.++|++|.+.|+.||..||++||.+|++
T Consensus 88 ~A~~lf~~M~~~G~~Pd~~tyn~l---------------I~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~ 152 (501)
T 4g26_A 88 RGFDIFKQMIVDKVVPNEATFTNG---------------ARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCR 152 (501)
T ss_dssp HHHHHHHHHHHTTCCCCHHHHHHH---------------HHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCCCHHHHHHH---------------HHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHH
Confidence 999999999999999998887765 55666679999999999999999999999999999999999
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 036072 481 QKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQ 551 (631)
Q Consensus 481 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 551 (631)
.|++++|.++|++|.+.|+.||..||++||.+|++.|++++|.+++++|.+.|..|+..||++++..|+..
T Consensus 153 ~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 153 KGDADKAYEVDAHMVESEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred CCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999998863
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.94 E-value=3.1e-22 Score=210.31 Aligned_cols=368 Identities=14% Similarity=0.033 Sum_probs=312.5
Q ss_pred hhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 036072 226 RPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELM 305 (631)
Q Consensus 226 ~~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m 305 (631)
+.|.+.+..+.+.. +.+...+..+...+...|++++|...++...+..+.+..+|..+...+...|++++|++.|+.+
T Consensus 16 ~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 93 (388)
T 1w3b_A 16 EAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHA 93 (388)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34666665543321 2346677788888999999999999999999988888999999999999999999999999999
Q ss_pred HhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 036072 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVA 385 (631)
Q Consensus 306 ~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 385 (631)
.+.. +.+..+|..+..++.+.|++++|...|+++.+..+.+...+..+...+...|++++|.+.|+++.+.. +-+..+
T Consensus 94 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 171 (388)
T 1w3b_A 94 LRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVA 171 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHH
Confidence 9864 45677899999999999999999999999887666677788899999999999999999999999863 335788
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC
Q 036072 386 HNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465 (631)
Q Consensus 386 y~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 465 (631)
|..+...+...|++++|...|+++.+. .|+ +...|..+...+...|++++|...|++..+...
T Consensus 172 ~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~--------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p- 234 (388)
T 1w3b_A 172 WSNLGCVFNAQGEIWLAIHHFEKAVTL--DPN--------------FLDAYINLGNVLKEARIFDRAVAAYLRALSLSP- 234 (388)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHH--CTT--------------CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCT-
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhc--CCC--------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-
Confidence 999999999999999999999999885 343 445677788889999999999999999887643
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036072 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545 (631)
Q Consensus 466 p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li 545 (631)
-+..++..+..+|...|++++|.+.|+++.+.. +.+..+|..+..+|.+.|++++|...|+++.+.. +.+..+|..+.
T Consensus 235 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 312 (388)
T 1w3b_A 235 NHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLA 312 (388)
T ss_dssp TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHH
Confidence 267889999999999999999999999999864 3457889999999999999999999999999864 34789999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHhh
Q 036072 546 GGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARWAETT 618 (631)
Q Consensus 546 ~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~l~~~~~~~ 618 (631)
..+...|++++|.++++++.+.. +.+...+..+..++.+.|++++|.+.++++..... .....+...+...
T Consensus 313 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p-~~~~a~~~lg~~~ 383 (388)
T 1w3b_A 313 NIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGNTL 383 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT-TCHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC-CCHHHHHhHHHHH
Confidence 99999999999999999998763 45678899999999999999999999999986543 3445554544443
|
| >1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.92 E-value=2e-21 Score=204.08 Aligned_cols=338 Identities=14% Similarity=0.039 Sum_probs=292.1
Q ss_pred hhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 036072 226 RPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELM 305 (631)
Q Consensus 226 ~~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m 305 (631)
+.|..++....+. .+.+..+|..+..++.+.|++++|...|+++.+..+.+..+|..+..++...|++++|++.|+.+
T Consensus 50 ~~a~~~~~~a~~~--~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a 127 (388)
T 1w3b_A 50 DRSAHFSTLAIKQ--NPLLAEAYSNLGNVYKERGQLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSA 127 (388)
T ss_dssp HHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHH
T ss_pred HHHHHHHHHHHhc--CCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4577777765432 24568899999999999999999999999999988878889999999999999999999999999
Q ss_pred HhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 036072 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVA 385 (631)
Q Consensus 306 ~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 385 (631)
.+.. +.+...+..+...+...|++++|..+|+++.+..+.+..+|+.+...+.+.|++++|...|+++.+.. +-+...
T Consensus 128 l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~ 205 (388)
T 1w3b_A 128 LQYN-PDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PNFLDA 205 (388)
T ss_dssp HHHC-TTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred HHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHH
Confidence 9875 44566778888999999999999999999987767778899999999999999999999999999864 235778
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC
Q 036072 386 HNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465 (631)
Q Consensus 386 y~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 465 (631)
|..+...+...|++++|...+++..+. .|+ +..++..+...|.+.|++++|.+.|+++.+....
T Consensus 206 ~~~lg~~~~~~~~~~~A~~~~~~al~~--~p~--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 269 (388)
T 1w3b_A 206 YINLGNVLKEARIFDRAVAAYLRALSL--SPN--------------HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH 269 (388)
T ss_dssp HHHHHHHHHTTTCTTHHHHHHHHHHHH--CTT--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh--CcC--------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 899999999999999999999998875 343 4556777888999999999999999999986432
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036072 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545 (631)
Q Consensus 466 p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li 545 (631)
+..+|..+..++.+.|++++|...|+++.+.. +.+..+++.+...+...|++++|...++++.+.. +.+..++..+.
T Consensus 270 -~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 346 (388)
T 1w3b_A 270 -FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLA 346 (388)
T ss_dssp -CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHH
T ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 67789999999999999999999999999864 5678999999999999999999999999998763 23688999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 036072 546 GGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587 (631)
Q Consensus 546 ~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g 587 (631)
..|.+.|++++|.+.++++.+.. +.+...|..+...+...|
T Consensus 347 ~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 347 SVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHcc
Confidence 99999999999999999999853 334666777777776655
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.89 E-value=5.2e-20 Score=196.87 Aligned_cols=333 Identities=11% Similarity=0.050 Sum_probs=277.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 036072 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLEN 323 (631)
Q Consensus 244 ~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~ 323 (631)
+...|..+...+.+.|++++|+.+|+++.+..+.+..++..+..++...|++++|+..|+.+.+.+ +.+..++..+..+
T Consensus 25 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 103 (450)
T 2y4t_A 25 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRGHL 103 (450)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHH
Confidence 467899999999999999999999999998888889999999999999999999999999999876 5578899999999
Q ss_pred HHcCCChHHHHHHHHHHhcccCCCh---hhHHHHHH------------HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 036072 324 LGRSKLPKEAQLLFDKLKHRFTPNL---TTYTVLLG------------GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNI 388 (631)
Q Consensus 324 ~~~~g~~~~A~~l~~~m~~~~~p~~---~~y~~Li~------------~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ 388 (631)
|.+.|++++|...|+++.+..+.+. ..+..++. .+.+.|++++|...|+++.+.. +.+..++..
T Consensus 104 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 182 (450)
T 2y4t_A 104 LLKQGKLDEAEDDFKKVLKSNPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVC-VWDAELREL 182 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHH
Confidence 9999999999999999987655555 66666644 4899999999999999999863 347888999
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCH
Q 036072 389 MLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDG 468 (631)
Q Consensus 389 li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 468 (631)
+..+|.+.|++++|.+.|+.+.+.. |+ +..+|..+...|...|++++|...|+++.+.... +.
T Consensus 183 l~~~~~~~g~~~~A~~~~~~~~~~~--~~--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~ 245 (450)
T 2y4t_A 183 RAECFIKEGEPRKAISDLKAASKLK--ND--------------NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HK 245 (450)
T ss_dssp HHHHHHHTTCGGGGHHHHHHHHHHH--CS--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhC--CC--------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-hH
Confidence 9999999999999999999998752 22 4566777888999999999999999999875322 44
Q ss_pred HHHHHH------------HHHHHhcCChhHHHHHHHHHHHCCCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 469 LTYNAL------------IKLMKIQKMPDEAVRIYKEMVRSGFKPT-----IHTYNMIMKSYFQTGNYEMGRKVWDEMIR 531 (631)
Q Consensus 469 ~t~~~l------------i~~~~~~g~~~~A~~l~~~m~~~g~~p~-----~~t~~~Li~~~~~~g~~~~A~~~~~~m~~ 531 (631)
..+..+ ...|...|++++|..+|+++.+. .|+ ...|..+..++.+.|++++|...++++.+
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~ 323 (450)
T 2y4t_A 246 RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKT--EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQ 323 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 455444 78899999999999999999985 344 45788899999999999999999999987
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH------------HHhcC-----CHHHHHH
Q 036072 532 RGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAAD------------LSRAG-----RSYVLDE 594 (631)
Q Consensus 532 ~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~------------~~~~g-----~~~~A~~ 594 (631)
... .+...|..+..+|...|++++|...++++.+.. +-+...+..+..+ |...| +.+++.+
T Consensus 324 ~~p-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~ 401 (450)
T 2y4t_A 324 MEP-DNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN-ENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIK 401 (450)
T ss_dssp HCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHH
T ss_pred hCc-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHH
Confidence 632 378999999999999999999999999999853 3345566666533 33334 5566777
Q ss_pred HHHHH
Q 036072 595 LAQKM 599 (631)
Q Consensus 595 l~~~m 599 (631)
.++++
T Consensus 402 ~y~~~ 406 (450)
T 2y4t_A 402 AYRKL 406 (450)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77763
|
| >2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A | Back alignment and structure |
|---|
Probab=99.87 E-value=3.5e-19 Score=190.42 Aligned_cols=317 Identities=10% Similarity=-0.014 Sum_probs=260.6
Q ss_pred HHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcc
Q 036072 264 MVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR 343 (631)
Q Consensus 264 A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~ 343 (631)
+...+.+.....+.+...+..+...+...|++++|+.+|+.+.+.. +.+..++..+..+|...|++++|...|+++.+.
T Consensus 11 ~~~~~~~~~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 89 (450)
T 2y4t_A 11 VDLGTENLYFQSMADVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIQL 89 (450)
T ss_dssp ------------CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred ccccccccccccHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 3444555555555577789999999999999999999999999864 567899999999999999999999999999887
Q ss_pred cCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHH------------HHHHHHcCCHHHHHHHHH
Q 036072 344 FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDV----VAHNIM------------LEGLLKIGKRSDAIKLFE 407 (631)
Q Consensus 344 ~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~ty~~l------------i~~~~~~g~~~~A~~ll~ 407 (631)
.+.+..++..+...|.+.|++++|...|+++.+. .|+. ..+..+ ...+...|++++|++.|+
T Consensus 90 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~ 167 (450)
T 2y4t_A 90 KMDFTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLD 167 (450)
T ss_dssp CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6778899999999999999999999999999985 3443 455555 344889999999999999
Q ss_pred HHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHH
Q 036072 408 VMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEA 487 (631)
Q Consensus 408 ~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 487 (631)
.+.+.. |+ +..++..+..+|.+.|++++|..+|+++.+.. +.+..++..+...|...|++++|
T Consensus 168 ~~~~~~--~~--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A 230 (450)
T 2y4t_A 168 KILEVC--VW--------------DAELRELRAECFIKEGEPRKAISDLKAASKLK-NDNTEAFYKISTLYYQLGDHELS 230 (450)
T ss_dssp HHHHHC--TT--------------CHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHH-CSCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHhC--CC--------------ChHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 998753 33 45567778899999999999999999998763 34788999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHc
Q 036072 488 VRIYKEMVRSGFKPTIHTYNMI------------MKSYFQTGNYEMGRKVWDEMIRRGCCPD----DNSYTVLIGGLISQ 551 (631)
Q Consensus 488 ~~l~~~m~~~g~~p~~~t~~~L------------i~~~~~~g~~~~A~~~~~~m~~~g~~p~----~~t~~~li~~~~~~ 551 (631)
+..|+++.+.. +.+...+..+ ..+|...|++++|...|+++.+.... + ...|..+...+.+.
T Consensus 231 ~~~~~~~~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~l~~~~~~~ 308 (450)
T 2y4t_A 231 LSEVRECLKLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-IAEYTVRSKERICHCFSKD 308 (450)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHhC-CChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-chHHHHHHHHHHHHHHHHC
Confidence 99999998753 2344455444 88999999999999999999985322 2 45788899999999
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 036072 552 DRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603 (631)
Q Consensus 552 g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 603 (631)
|++++|...++++.+.. +.+...|..+..+|...|++++|.+.++++.+..
T Consensus 309 g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~ 359 (450)
T 2y4t_A 309 EKPVEAIRVCSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYETAQEHN 359 (450)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS
T ss_pred CCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 99999999999998763 4468899999999999999999999999997654
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.86 E-value=5.4e-19 Score=191.99 Aligned_cols=354 Identities=12% Similarity=-0.048 Sum_probs=292.7
Q ss_pred hhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 036072 226 RPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELM 305 (631)
Q Consensus 226 ~~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m 305 (631)
..|.+.|..+.... ||...|..+..++.+.|++++|...++++.+.++.+..++..+..++...|++++|+..|+.+
T Consensus 23 ~~A~~~~~~al~~~---p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 99 (514)
T 2gw1_A 23 DDAIKYYNWALELK---EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKPDYSKVLLRRASANEGLGKFADAMFDLSVL 99 (514)
T ss_dssp HHHHHHHHHHHHHC---CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcC---ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 45888888875433 689999999999999999999999999999988888899999999999999999999999998
Q ss_pred HhCCCCcC------------------------------------------------------------------------
Q 036072 306 NKYKFKAG------------------------------------------------------------------------ 313 (631)
Q Consensus 306 ~~~g~~~~------------------------------------------------------------------------ 313 (631)
.+.+. .+
T Consensus 100 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 178 (514)
T 2gw1_A 100 SLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMASFFGIFKPELTFA 178 (514)
T ss_dssp HHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHHHHHTTSCCCCCCS
T ss_pred HhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHHHHHhhcCHHHHHH
Confidence 77641 11
Q ss_pred -------HHHHHHHHHHHHc---CCChHHHHHHHHHHhc-----c--c-------CCChhhHHHHHHHHHhcCCHHHHHH
Q 036072 314 -------VDTINCLLENLGR---SKLPKEAQLLFDKLKH-----R--F-------TPNLTTYTVLLGGWCRVKNLMEAGR 369 (631)
Q Consensus 314 -------~~~~~~Ll~~~~~---~g~~~~A~~l~~~m~~-----~--~-------~p~~~~y~~Li~~~~~~g~~~~A~~ 369 (631)
...+..+...+.. .|++++|..+|+++.+ . . +.+..++..+...+...|++++|..
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~ 258 (514)
T 2gw1_A 179 NYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGIFKFLKNDPLGAHE 258 (514)
T ss_dssp SCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHHHHHHSSCHHHHHH
T ss_pred HhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHHHHHHCCCHHHHHH
Confidence 2233333333333 7999999999998766 2 1 2345678888999999999999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCH
Q 036072 370 VWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRM 449 (631)
Q Consensus 370 l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~ 449 (631)
.|+++.+... +...+..+...+...|++++|.+.++.+.+.. |+ +..++..+...|...|++
T Consensus 259 ~~~~~l~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~--------------~~~~~~~l~~~~~~~~~~ 320 (514)
T 2gw1_A 259 DIKKAIELFP--RVNSYIYMALIMADRNDSTEYYNYFDKALKLD--SN--------------NSSVYYHRGQMNFILQNY 320 (514)
T ss_dssp HHHHHHHHCC--CHHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC--TT--------------CTHHHHHHHHHHHHTTCT
T ss_pred HHHHHHhhCc--cHHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC--cC--------------CHHHHHHHHHHHHHhCCH
Confidence 9999988643 38888889999999999999999999988753 32 344566778889999999
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 036072 450 DIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEM 529 (631)
Q Consensus 450 ~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m 529 (631)
++|...|++..+.... +...+..+...+...|++++|..+++++.+.. +.+..++..+..+|...|++++|...++++
T Consensus 321 ~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 321 DQAGKDFDKAKELDPE-NIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp THHHHHHHHHHHTCSS-CSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChh-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 9999999999886443 56788889999999999999999999998753 335678899999999999999999999998
Q ss_pred HHcCCC-CC----HHHHHHHHHHHHH---cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036072 530 IRRGCC-PD----DNSYTVLIGGLIS---QDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRF 601 (631)
Q Consensus 530 ~~~g~~-p~----~~t~~~li~~~~~---~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 601 (631)
.+.... ++ ...|..+...+.. .|++++|...++++.+.. +.+...+..+..++.+.|++++|.+.+++...
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 864221 12 4488899999999 999999999999998864 44677889999999999999999999999887
Q ss_pred cCC
Q 036072 602 SGK 604 (631)
Q Consensus 602 ~g~ 604 (631)
...
T Consensus 478 ~~~ 480 (514)
T 2gw1_A 478 LAR 480 (514)
T ss_dssp HCS
T ss_pred hcc
Confidence 664
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.84 E-value=4.9e-17 Score=167.35 Aligned_cols=302 Identities=11% Similarity=0.023 Sum_probs=177.4
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 036072 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLEN 323 (631)
Q Consensus 244 ~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~ 323 (631)
|+..|..+...+...|++++|...|+++.+..+.+..++..+..++...|++++|+..|+.+.+.. +.+...+..+...
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~ 80 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHL 80 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHH
Confidence 356677788888888899999999988888777778888888888888888888888888888764 4466778888888
Q ss_pred HHcCCChHHHHHHHHHHhcccC---CChhhHHHH------------HHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 036072 324 LGRSKLPKEAQLLFDKLKHRFT---PNLTTYTVL------------LGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNI 388 (631)
Q Consensus 324 ~~~~g~~~~A~~l~~~m~~~~~---p~~~~y~~L------------i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~ 388 (631)
|...|++++|...|+++.+..+ .+...+..+ ...+...|++++|..+++++.+.. +.+...+..
T Consensus 81 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~ 159 (359)
T 3ieg_A 81 LLKQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC-VWDAELREL 159 (359)
T ss_dssp HHHHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCchHHHHH
Confidence 8888888888888888776544 445555544 355566666666666666665542 234555556
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCH
Q 036072 389 MLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDG 468 (631)
Q Consensus 389 li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 468 (631)
+...+...|++++|...++.+.+. .|+ +..++..+...|...|++++|...|+...+.... +.
T Consensus 160 ~~~~~~~~~~~~~A~~~~~~~~~~--~~~--------------~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~-~~ 222 (359)
T 3ieg_A 160 RAECFIKEGEPRKAISDLKAASKL--KSD--------------NTEAFYKISTLYYQLGDHELSLSEVRECLKLDQD-HK 222 (359)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTT--CSC--------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHh--CCC--------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-ch
Confidence 666666666666666666665553 222 2333444555555556666666666655543211 22
Q ss_pred HHHHH------------HHHHHHhcCChhHHHHHHHHHHHCCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036072 469 LTYNA------------LIKLMKIQKMPDEAVRIYKEMVRSGFKPTI----HTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532 (631)
Q Consensus 469 ~t~~~------------li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~Li~~~~~~g~~~~A~~~~~~m~~~ 532 (631)
..+.. +...+.+.|++++|...++++.+.... +. ..+..+..+|...|++++|...+++..+.
T Consensus 223 ~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 301 (359)
T 3ieg_A 223 RCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQM 301 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHh
Confidence 22211 123344444444444444444442111 11 11223344444444444444444444443
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 533 GCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLE 566 (631)
Q Consensus 533 g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~ 566 (631)
.. .+..+|..+...|...|++++|.+.|+++.+
T Consensus 302 ~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~ 334 (359)
T 3ieg_A 302 EP-DNVNALKDRAEAYLIEEMYDEAIQDYEAAQE 334 (359)
T ss_dssp CT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred Cc-ccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 11 1344444444444444444444444444444
|
| >2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.82 E-value=1.5e-17 Score=180.52 Aligned_cols=338 Identities=10% Similarity=-0.030 Sum_probs=278.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENL 324 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~ 324 (631)
...|......+.+.|++++|+..|+++...++ +..++..+..++...|++++|++.|+.+.+.. +.+..++..+..+|
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKE-DPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCc-cHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHH
Confidence 45677788889999999999999999998874 88899999999999999999999999999876 56788999999999
Q ss_pred HcCCChHHHHHHHHHHhcccCCC---------------------------------------------------------
Q 036072 325 GRSKLPKEAQLLFDKLKHRFTPN--------------------------------------------------------- 347 (631)
Q Consensus 325 ~~~g~~~~A~~l~~~m~~~~~p~--------------------------------------------------------- 347 (631)
...|++++|...|+++....+++
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 99999999999999876543222
Q ss_pred ----------------------hhhHHHHHHHHHh---cCCHHHHHHHHHHHHH-----cCCC--------CCHHHHHHH
Q 036072 348 ----------------------LTTYTVLLGGWCR---VKNLMEAGRVWNEMID-----KGFK--------PDVVAHNIM 389 (631)
Q Consensus 348 ----------------------~~~y~~Li~~~~~---~g~~~~A~~l~~~m~~-----~g~~--------p~~~ty~~l 389 (631)
...+..+...+.. .|++++|..+|+++.+ ..-. .+..++..+
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 243 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHT 243 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHH
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHH
Confidence 2233333333443 7999999999999988 3112 235678888
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHH
Q 036072 390 LEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGL 469 (631)
Q Consensus 390 i~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 469 (631)
...+...|++++|...++.+.+.. |+. .++..+...|...|++++|...++.+.+... .+..
T Consensus 244 ~~~~~~~~~~~~A~~~~~~~l~~~--~~~---------------~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~ 305 (514)
T 2gw1_A 244 GIFKFLKNDPLGAHEDIKKAIELF--PRV---------------NSYIYMALIMADRNDSTEYYNYFDKALKLDS-NNSS 305 (514)
T ss_dssp HHHHHHSSCHHHHHHHHHHHHHHC--CCH---------------HHHHHHHHHHHTSSCCTTGGGHHHHHHTTCT-TCTH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhC--ccH---------------HHHHHHHHHHHHCCCHHHHHHHHHHHhhcCc-CCHH
Confidence 899999999999999999998764 332 2345567888889999999999999987643 3677
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 036072 470 TYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLI 549 (631)
Q Consensus 470 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~ 549 (631)
.+..+...+...|++++|...++++.+.. +.+...+..+..+|...|++++|..+++++.+.... +..+|..+...|.
T Consensus 306 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~la~~~~ 383 (514)
T 2gw1_A 306 VYYHRGQMNFILQNYDQAGKDFDKAKELD-PENIFPYIQLACLAYRENKFDDCETLFSEAKRKFPE-APEVPNFFAEILT 383 (514)
T ss_dssp HHHHHHHHHHHTTCTTHHHHHHHHHHHTC-SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHhC-hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHccc-CHHHHHHHHHHHH
Confidence 88999999999999999999999999864 336778899999999999999999999999876432 6778899999999
Q ss_pred HcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHHHHh---cCCHHHHHHHHHHHHhcCC
Q 036072 550 SQDRSGEAYKYLEEMLEKGM-KAP----VLDYNKFAADLSR---AGRSYVLDELAQKMRFSGK 604 (631)
Q Consensus 550 ~~g~~~~A~~ll~~m~~~g~-~p~----~~~~~~li~~~~~---~g~~~~A~~l~~~m~~~g~ 604 (631)
..|++++|...++++.+... .++ ...+..+..++.. .|++++|.+.++++.....
T Consensus 384 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~ 446 (514)
T 2gw1_A 384 DKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDP 446 (514)
T ss_dssp HTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCT
T ss_pred HCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCc
Confidence 99999999999999976421 122 3488899999999 9999999999999876553
|
| >3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.82 E-value=2.6e-16 Score=161.86 Aligned_cols=302 Identities=10% Similarity=-0.014 Sum_probs=253.5
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHH
Q 036072 279 METFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGW 358 (631)
Q Consensus 279 ~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~ 358 (631)
.+.+..+...+...|++++|+..|+.+.+.. +.+..++..+...+...|++++|...|+++.+..+.+...|..+...+
T Consensus 3 ~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 81 (359)
T 3ieg_A 3 VEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMDFTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCcchHHHHHHHHH
Confidence 4678888999999999999999999999875 567889999999999999999999999998876666888999999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCC----CHHHHHHH------------HHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHH
Q 036072 359 CRVKNLMEAGRVWNEMIDKGFKP----DVVAHNIM------------LEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYT 422 (631)
Q Consensus 359 ~~~g~~~~A~~l~~~m~~~g~~p----~~~ty~~l------------i~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~ 422 (631)
...|++++|...|+++.+. .| +...+..+ ...+...|++++|.+.++.+.+.. |+
T Consensus 82 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~--~~----- 152 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVKADEMQRLRSQALDAFDGADYTAAITFLDKILEVC--VW----- 152 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT-----
T ss_pred HHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC--CC-----
Confidence 9999999999999999875 34 34444444 578889999999999999998753 32
Q ss_pred HHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC
Q 036072 423 IMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPT 502 (631)
Q Consensus 423 ~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 502 (631)
+..++..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...+++..+.. +.+
T Consensus 153 ---------~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~ 221 (359)
T 3ieg_A 153 ---------DAELRELRAECFIKEGEPRKAISDLKAASKLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD-QDH 221 (359)
T ss_dssp ---------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTC
T ss_pred ---------chHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-ccc
Confidence 44566777888999999999999999998864 3478899999999999999999999999998753 223
Q ss_pred HHHHH------------HHHHHHHHcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 503 IHTYN------------MIMKSYFQTGNYEMGRKVWDEMIRRGCCPDD----NSYTVLIGGLISQDRSGEAYKYLEEMLE 566 (631)
Q Consensus 503 ~~t~~------------~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~----~t~~~li~~~~~~g~~~~A~~ll~~m~~ 566 (631)
...+. .+...+...|++++|...++++.+.... +. ..+..+...+...|++++|.+.++++.+
T Consensus 222 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 300 (359)
T 3ieg_A 222 KRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTEPS-VAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQ 300 (359)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS-SHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 33332 3366789999999999999999986433 33 2355677889999999999999999998
Q ss_pred CCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 036072 567 KGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSG 603 (631)
Q Consensus 567 ~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 603 (631)
.. +.+...|..+..++.+.|++++|.+.+++.....
T Consensus 301 ~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~ 336 (359)
T 3ieg_A 301 ME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN 336 (359)
T ss_dssp HC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred hC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 63 4478889999999999999999999999998755
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.81 E-value=8.8e-17 Score=175.73 Aligned_cols=356 Identities=12% Similarity=0.020 Sum_probs=278.2
Q ss_pred hhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 036072 226 RPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELM 305 (631)
Q Consensus 226 ~~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m 305 (631)
..|.+.|..+.... +.+...|..+..++.+.|++++|+..|+++.+.++.+..++..+..++...|++++|+..|+.+
T Consensus 42 ~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~ 119 (537)
T 3fp2_A 42 NEAIKYYQYAIELD--PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPDHSKALLRRASANESLGNFTDAMFDLSVL 119 (537)
T ss_dssp C-CHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 45889888875432 3468899999999999999999999999999988888999999999999999999999999644
Q ss_pred HhCCCC------------------------------------cCHH------------------------------HHHH
Q 036072 306 NKYKFK------------------------------------AGVD------------------------------TINC 319 (631)
Q Consensus 306 ~~~g~~------------------------------------~~~~------------------------------~~~~ 319 (631)
....-. |+.. ....
T Consensus 120 ~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 199 (537)
T 3fp2_A 120 SLNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDA 199 (537)
T ss_dssp C-----------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHH
T ss_pred hcCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHHHHhhccccccHHHHHHHH
Confidence 211100 1100 1111
Q ss_pred HHHHHHcC--------CChHHHHHHHHHHhcccCCChh-------hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHH
Q 036072 320 LLENLGRS--------KLPKEAQLLFDKLKHRFTPNLT-------TYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVV 384 (631)
Q Consensus 320 Ll~~~~~~--------g~~~~A~~l~~~m~~~~~p~~~-------~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 384 (631)
+...+... |++++|..+|+++.+..+.+.. +|..+...+...|++++|...|+++.+. .|+..
T Consensus 200 l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~ 277 (537)
T 3fp2_A 200 LQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTVDDPLRENAALALCYTGIFHFLKNNLLDAQVLLQESINL--HPTPN 277 (537)
T ss_dssp HHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHH
T ss_pred HHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCCcchhhHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHhc--CCCch
Confidence 22222211 3778888888888765554433 4667778888899999999999999986 45678
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC
Q 036072 385 AHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464 (631)
Q Consensus 385 ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 464 (631)
.|..+...+...|++++|.+.++.+.+.. |+ +..+|..+...|...|++++|...|++..+...
T Consensus 278 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~--------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 341 (537)
T 3fp2_A 278 SYIFLALTLADKENSQEFFKFFQKAVDLN--PE--------------YPPTYYHRGQMYFILQDYKNAKEDFQKAQSLNP 341 (537)
T ss_dssp HHHHHHHHTCCSSCCHHHHHHHHHHHHHC--TT--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHhccC--CC--------------CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCC
Confidence 88888899999999999999999988753 32 455677788889999999999999999988643
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-----CCCCHH
Q 036072 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG-----CCPDDN 539 (631)
Q Consensus 465 ~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g-----~~p~~~ 539 (631)
. +...+..+...+...|++++|..+++++.+.. +.+...+..+..+|...|++++|...|+++.+.. ......
T Consensus 342 ~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 419 (537)
T 3fp2_A 342 E-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIG 419 (537)
T ss_dssp T-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTH
T ss_pred C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHH
Confidence 3 56788899999999999999999999999864 4457789999999999999999999999987642 112233
Q ss_pred HHHHHHHHHHHc----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 036072 540 SYTVLIGGLISQ----------DRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGK 604 (631)
Q Consensus 540 t~~~li~~~~~~----------g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 604 (631)
.+..+...+... |++++|...++++.+.. +.+...+..+..++.+.|++++|.+.+++......
T Consensus 420 ~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~ 493 (537)
T 3fp2_A 420 PLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILAR 493 (537)
T ss_dssp HHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCC
Confidence 345556677777 99999999999999864 45678899999999999999999999999877553
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.78 E-value=1.6e-16 Score=161.63 Aligned_cols=287 Identities=10% Similarity=-0.058 Sum_probs=196.1
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 036072 242 AHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLL 321 (631)
Q Consensus 242 ~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll 321 (631)
..+...+..+...+...|++++|..+|+++.+..+.+...+..++.++...|++++|..+++.+.+.. +.+...+..+.
T Consensus 19 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 19 QENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPFHASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp -CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 33455667777888888999999999998888877677777777888888888888888888888764 45677788888
Q ss_pred HHHHcCC-ChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 036072 322 ENLGRSK-LPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRS 400 (631)
Q Consensus 322 ~~~~~~g-~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~ 400 (631)
..+...| ++++|...|++..+..+.+...|..+...+...|++++|...|+++.+... .+...+..+...|...|+++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~ 176 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMK-GCHLPMLYIGLEYGLTNNSK 176 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTT-TCSHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhcc-ccHHHHHHHHHHHHHHhhHH
Confidence 8888888 888888888888766566677888888888888888888888888877632 23455666777888888888
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC--------CCCCHHHHH
Q 036072 401 DAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERG--------CPPDGLTYN 472 (631)
Q Consensus 401 ~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g--------~~p~~~t~~ 472 (631)
+|.+.++.+.+.. |+ +..++..+...|...|++++|...+++..+.. .+.+..++.
T Consensus 177 ~A~~~~~~al~~~--~~--------------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 240 (330)
T 3hym_B 177 LAERFFSQALSIA--PE--------------DPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLN 240 (330)
T ss_dssp HHHHHHHHHHTTC--TT--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHH
T ss_pred HHHHHHHHHHHhC--CC--------------ChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHH
Confidence 8888888877642 32 33445556666777777777777777665431 122334555
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 036072 473 ALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGL 548 (631)
Q Consensus 473 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~ 548 (631)
.+...+...|++++|...++++.+.. +.+...+..+..+|...|++++|...|+++.+... .+...+..+..++
T Consensus 241 ~la~~~~~~g~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~ 314 (330)
T 3hym_B 241 NLGHVCRKLKKYAEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRR-DDTFSVTMLGHCI 314 (330)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCS-CCHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCC-CchHHHHHHHHHH
Confidence 55666666666666666666655532 22345555555555566666666666555554321 1444444444444
|
| >3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.76 E-value=5.2e-16 Score=157.89 Aligned_cols=291 Identities=8% Similarity=-0.031 Sum_probs=215.2
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHH
Q 036072 278 SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357 (631)
Q Consensus 278 ~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~ 357 (631)
+...+..+...+...|++++|+++|+.+.+.. +.+...+..++..+...|++++|..+++++.+..+.+...|..+...
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~ 99 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPSNPVSWFAVGCY 99 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHH
Confidence 44567777778888888888888888887764 44556666677778888888888888888877666677788888888
Q ss_pred HHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHH
Q 036072 358 WCRVK-NLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVY 436 (631)
Q Consensus 358 ~~~~g-~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 436 (631)
+...| ++++|...|++..+.. +.+...|..+...+...|++++|.+.++.+.+.... +...+
T Consensus 100 ~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~----------------~~~~~ 162 (330)
T 3hym_B 100 YLMVGHKNEHARRYLSKATTLE-KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG----------------CHLPM 162 (330)
T ss_dssp HHHSCSCHHHHHHHHHHHHTTC-TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT----------------CSHHH
T ss_pred HHHhhhhHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc----------------cHHHH
Confidence 88888 8888888888887653 234667788888888888888888888888765322 22334
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC--------CCCCHHHHHH
Q 036072 437 TCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSG--------FKPTIHTYNM 508 (631)
Q Consensus 437 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g--------~~p~~~t~~~ 508 (631)
..+...|...|++++|...+++..+... .+...+..+...+...|++++|...++++.+.. ...+..++..
T Consensus 163 ~~l~~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 241 (330)
T 3hym_B 163 LYIGLEYGLTNNSKLAERFFSQALSIAP-EDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNN 241 (330)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHH
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHHhCC-CChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHH
Confidence 4466777778888888888888876532 356778888888888888888888888877531 1233567778
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH-HhcC
Q 036072 509 IMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADL-SRAG 587 (631)
Q Consensus 509 Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~-~~~g 587 (631)
+..+|...|++++|...+++..+.... +...|..+...|...|++++|.+.++++.+.. +.+...+..+..++ ...|
T Consensus 242 la~~~~~~g~~~~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~g 319 (330)
T 3hym_B 242 LGHVCRKLKKYAEALDYHRQALVLIPQ-NASTYSAIGYIHSLMGNFENAVDYFHTALGLR-RDDTFSVTMLGHCIEMYIG 319 (330)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTC-SCCHHHHHHHHHHHHTTTT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhhCcc-chHHHHHHHHHHHHhccHHHHHHHHHHHHccC-CCchHHHHHHHHHHHHHhC
Confidence 888888888888888888888775433 56777888888888888888888888877653 33566677777766 3455
Q ss_pred CH
Q 036072 588 RS 589 (631)
Q Consensus 588 ~~ 589 (631)
+.
T Consensus 320 ~~ 321 (330)
T 3hym_B 320 DS 321 (330)
T ss_dssp C-
T ss_pred ch
Confidence 54
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.75 E-value=2.4e-16 Score=163.37 Aligned_cols=302 Identities=11% Similarity=-0.046 Sum_probs=212.4
Q ss_pred HccCHHHHHH-HHHHHHhCCC---CcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHH
Q 036072 291 AAKERKKAVA-IFELMNKYKF---KAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLME 366 (631)
Q Consensus 291 ~~g~~~~A~~-v~~~m~~~g~---~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~ 366 (631)
..|++++|++ .|+...+... ..+...+..+...+...|++++|...|+++.+..+.+..+|..+...+.+.|++++
T Consensus 37 ~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 37 WLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp ---------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCcCHHH
Confidence 3466666666 6665544321 11234566677777777788888887777776656667777777778888888888
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHH--HHHHhhcCHHHHHHHHHHHh
Q 036072 367 AGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM--IWKFCKQNAAVYTCLITGFG 444 (631)
Q Consensus 367 A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~l--i~~~~~~~~~~~~~li~~~~ 444 (631)
|...|+++.+.. +.+..++..+...+...|++++|.+.++.+.+....... .+..+ +..... ....+..+...+
T Consensus 117 A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~-~~~~~~~~~~~~- 192 (368)
T 1fch_A 117 AISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAH-LVTPAEEGAGGAG-LGPSKRILGSLL- 192 (368)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGG-GCC----------------CTTHHHH-
T ss_pred HHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHH-HHHHHHHHhhhhc-ccHHHHHHHHHh-
Confidence 888888777653 336677777777888888888888888777764322111 10000 000000 000111122233
Q ss_pred ccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 036072 445 NRRRMDIVYDLLKEMEERGCPP-DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGR 523 (631)
Q Consensus 445 ~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~ 523 (631)
..|++++|...|+++.+..... +..++..+...|...|++++|...|+++.+.. +.+..++..+..+|...|++++|.
T Consensus 193 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 271 (368)
T 1fch_A 193 SDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAV 271 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred hcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHH
Confidence 7789999999999998764332 57899999999999999999999999998863 446789999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC----------CHHHHHHHHHHHHhcCCHHHHH
Q 036072 524 KVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKA----------PVLDYNKFAADLSRAGRSYVLD 593 (631)
Q Consensus 524 ~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p----------~~~~~~~li~~~~~~g~~~~A~ 593 (631)
..|+++.+... .+..++..+...|...|++++|...++++.+..... ....|..+..++...|+.++|.
T Consensus 272 ~~~~~al~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 350 (368)
T 1fch_A 272 AAYRRALELQP-GYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 350 (368)
T ss_dssp HHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHH
Confidence 99999988643 368899999999999999999999999998642111 2678999999999999999999
Q ss_pred HHHHH
Q 036072 594 ELAQK 598 (631)
Q Consensus 594 ~l~~~ 598 (631)
.++++
T Consensus 351 ~~~~~ 355 (368)
T 1fch_A 351 AADAR 355 (368)
T ss_dssp HHHTT
T ss_pred HhHHH
Confidence 88763
|
| >1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A | Back alignment and structure |
|---|
Probab=99.73 E-value=6.6e-16 Score=160.08 Aligned_cols=289 Identities=13% Similarity=0.016 Sum_probs=205.8
Q ss_pred cCChhHHHH-HHHHHHHCCCC----CHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHH
Q 036072 258 ARQFETMVS-MLEEMGEKGLL----SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKE 332 (631)
Q Consensus 258 ~g~~~~A~~-l~~~m~~~g~~----~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~ 332 (631)
.|++++|.. .+++....... +...+..+...+...|++++|+..|+.+.+.. +.+..++..+..+|...|++++
T Consensus 38 ~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 116 (368)
T 1fch_A 38 LSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQELL 116 (368)
T ss_dssp --------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCHHH
Confidence 356666666 55544433221 23355666677777777777777777777654 4466667777777777777777
Q ss_pred HHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHH---------------HHHHHHHcC
Q 036072 333 AQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNI---------------MLEGLLKIG 397 (631)
Q Consensus 333 A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~---------------li~~~~~~g 397 (631)
|...|+++.+..+.+..++..+...|...|++++|...|+++...... +...+.. .+..+...|
T Consensus 117 A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 195 (368)
T 1fch_A 117 AISALRRCLELKPDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEGAGGAGLGPSKRILGSLLSDS 195 (368)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------CTTHHHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHHhhhhcccHHHHHHHHHhhcc
Confidence 777777766555556667777777777777777777777777764321 1111111 233444889
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 036072 398 KRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL 477 (631)
Q Consensus 398 ~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~ 477 (631)
++++|...++.+.+...... +..++..+...|.+.|++++|...|+++.+.. +.+...|..+...
T Consensus 196 ~~~~A~~~~~~a~~~~p~~~--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~ 260 (368)
T 1fch_A 196 LFLEVKELFLAAVRLDPTSI--------------DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGAT 260 (368)
T ss_dssp HHHHHHHHHHHHHHHSTTSC--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcCcc--------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHH
Confidence 99999999999987533210 23456667888889999999999999998763 3367899999999
Q ss_pred HHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC----------CHHHHHHHHHH
Q 036072 478 MKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP----------DDNSYTVLIGG 547 (631)
Q Consensus 478 ~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p----------~~~t~~~li~~ 547 (631)
+...|++++|...|+++.+.. +.+...+..+..+|...|++++|...|+++.+..... ...+|..+..+
T Consensus 261 ~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~ 339 (368)
T 1fch_A 261 LANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLA 339 (368)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHH
Confidence 999999999999999998863 4467899999999999999999999999988742221 26899999999
Q ss_pred HHHcCCHHHHHHHHHHH
Q 036072 548 LISQDRSGEAYKYLEEM 564 (631)
Q Consensus 548 ~~~~g~~~~A~~ll~~m 564 (631)
|...|+.++|..++++.
T Consensus 340 ~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 340 LSMLGQSDAYGAADARD 356 (368)
T ss_dssp HHHHTCGGGHHHHHTTC
T ss_pred HHHhCChHhHHHhHHHH
Confidence 99999999999887643
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.72 E-value=3.4e-16 Score=162.45 Aligned_cols=277 Identities=9% Similarity=-0.055 Sum_probs=212.9
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 036072 313 GVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEG 392 (631)
Q Consensus 313 ~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~ 392 (631)
+...+..+...+.+.|++++|..+|+++.+..+.+..+|..+...|.+.|++++|...|+++.+.. +.+..+|..+..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 344577778888888888888888888877666778888888888999999999999998888763 3357788888888
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-CCHHHH
Q 036072 393 LLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP-PDGLTY 471 (631)
Q Consensus 393 ~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~ 471 (631)
|...|++++|.+.|+++.+. .|+.......+. .....+..+...|...|++++|..+|+++.+.... .+..++
T Consensus 143 ~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~----~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~ 216 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQ--NPKYKYLVKNKK----GSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQ 216 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--CHHHHCC-----------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHH
T ss_pred HHccccHHHHHHHHHHHHHh--CccchHHHhhhc----cchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHH
Confidence 99999999999999888774 232211100000 01234455678889999999999999999887432 268899
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 036072 472 NALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQ 551 (631)
Q Consensus 472 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~ 551 (631)
..+...|...|++++|+..|+++.+.. +.+..+|..+..+|...|++++|...|+++.+.... +..+|..+..+|...
T Consensus 217 ~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~ 294 (365)
T 4eqf_A 217 TGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQPG-FIRSRYNLGISCINL 294 (365)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-chHHHHHHHHHHHHC
Confidence 999999999999999999999999864 446889999999999999999999999999986432 588999999999999
Q ss_pred CCHHHHHHHHHHHHHCCC---C--------CCHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036072 552 DRSGEAYKYLEEMLEKGM---K--------APVLDYNKFAADLSRAGRSYVLDELAQK 598 (631)
Q Consensus 552 g~~~~A~~ll~~m~~~g~---~--------p~~~~~~~li~~~~~~g~~~~A~~l~~~ 598 (631)
|++++|...|+++.+..- . .+...|..+..++...|+.+.+.++.++
T Consensus 295 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 295 GAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQPELFQAANLG 352 (365)
T ss_dssp TCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCHHHHHHHHTT
T ss_pred CCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcHHHHHHHHHh
Confidence 999999999999986421 1 1356799999999999999998887664
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-17 Score=185.41 Aligned_cols=150 Identities=13% Similarity=0.079 Sum_probs=126.6
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHH---cCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 036072 433 AAVYTCLITGFGNRRRMDIVYDLLKEMEE---RGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMI 509 (631)
Q Consensus 433 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~---~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~L 509 (631)
..+||+||++||+.|++++|.++|.+|.+ +|+.||..|||+||.+||+.|++++|.++|++|.+.|+.||..|||+|
T Consensus 127 ~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYntL 206 (1134)
T 3spa_A 127 QQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAAA 206 (1134)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Confidence 45788889999999999999999988764 589999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC------HHHHHHHHHH
Q 036072 510 MKSYFQTGN-YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP------VLDYNKFAAD 582 (631)
Q Consensus 510 i~~~~~~g~-~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~------~~~~~~li~~ 582 (631)
|.++++.|+ .++|.++|++|.+.|+.||..+|+.++.++.+. .+++.++++ ..++.|+ ..+...|.+.
T Consensus 207 I~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~dl 281 (1134)
T 3spa_A 207 LQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRDV 281 (1134)
T ss_dssp HHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHHH
T ss_pred HHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHHH
Confidence 999999998 578999999999999999999999999877654 344444444 3455554 3344556666
Q ss_pred HHhcC
Q 036072 583 LSRAG 587 (631)
Q Consensus 583 ~~~~g 587 (631)
|.+.+
T Consensus 282 ~s~d~ 286 (1134)
T 3spa_A 282 YAKDG 286 (1134)
T ss_dssp HCCCS
T ss_pred HccCC
Confidence 66555
|
| >3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A | Back alignment and structure |
|---|
Probab=99.71 E-value=6.7e-15 Score=160.72 Aligned_cols=338 Identities=12% Similarity=-0.008 Sum_probs=264.4
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENL 324 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~ 324 (631)
...|..+...+.+.|++++|+..|+++.+..+.+..++..+..+|...|++++|++.|+.+.+.. +.+..++..+..++
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 103 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELDPNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASAN 103 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHH
Confidence 67788899999999999999999999999988899999999999999999999999999999876 56788999999999
Q ss_pred HcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCCCHHHHHH----------
Q 036072 325 GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK------GFKPDVVAHNI---------- 388 (631)
Q Consensus 325 ~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~------g~~p~~~ty~~---------- 388 (631)
...|++++|...|+.+... ....+..+..+...+...+|...++++... ...|+......
T Consensus 104 ~~~g~~~~A~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (537)
T 3fp2_A 104 ESLGNFTDAMFDLSVLSLN----GDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLE 179 (537)
T ss_dssp HHHTCHHHHHHHHHHHC---------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHH
T ss_pred HHcCCHHHHHHHHHHHhcC----CCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHH
Confidence 9999999999999744322 222233345566666678888888888543 12232222111
Q ss_pred ----------------HHHHHH------------HcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHH
Q 036072 389 ----------------MLEGLL------------KIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLI 440 (631)
Q Consensus 389 ----------------li~~~~------------~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li 440 (631)
+..++. ..|++++|..+++.+.+.... +...+..+ ..++..+.
T Consensus 180 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~p~-~~~~~~~~--------~~~~~~~g 250 (537)
T 3fp2_A 180 VSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSANTV-DDPLRENA--------ALALCYTG 250 (537)
T ss_dssp HHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC--CC-CHHHHHHH--------HHHHHHHH
T ss_pred HHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHCCC-cchhhHHH--------HHHHHHHH
Confidence 111111 124788999999988875322 22222221 23456677
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 036072 441 TGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE 520 (631)
Q Consensus 441 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~ 520 (631)
..+...|++++|...|+...+.. |+...+..+...+...|++++|...++++.+.. +.+..++..+..+|...|+++
T Consensus 251 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~ 327 (537)
T 3fp2_A 251 IFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYFILQDYK 327 (537)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHHhcCCHH
Confidence 88899999999999999998864 557888899999999999999999999999864 446888999999999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036072 521 MGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600 (631)
Q Consensus 521 ~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 600 (631)
+|...++++.+.... +...|..+...|...|++++|..+++++.+.. +.+...+..+...+...|++++|.+.++++.
T Consensus 328 ~A~~~~~~a~~~~~~-~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~ 405 (537)
T 3fp2_A 328 NAKEDFQKAQSLNPE-NVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYDIAK 405 (537)
T ss_dssp HHHHHHHHHHHHCTT-CSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 999999999986533 56789999999999999999999999998874 4456788999999999999999999999875
Q ss_pred h
Q 036072 601 F 601 (631)
Q Consensus 601 ~ 601 (631)
.
T Consensus 406 ~ 406 (537)
T 3fp2_A 406 R 406 (537)
T ss_dssp H
T ss_pred H
Confidence 4
|
| >4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.71 E-value=1.4e-15 Score=157.72 Aligned_cols=235 Identities=9% Similarity=-0.049 Sum_probs=148.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 036072 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLEN 323 (631)
Q Consensus 244 ~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~ 323 (631)
+...|..+...+.+.|++++|..+|+++.+..+.+..++..+..++...|++++|++.|+.+.+.. +.+..++..+..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 142 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQDPGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-PNNLKALMALAVS 142 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 345577888888888999999999999888877778888888888888888888888888888764 4567788888888
Q ss_pred HHcCCChHHHHHHHHHHhcccCCChhhH----------HHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHH
Q 036072 324 LGRSKLPKEAQLLFDKLKHRFTPNLTTY----------TVLLGGWCRVKNLMEAGRVWNEMIDKGFK-PDVVAHNIMLEG 392 (631)
Q Consensus 324 ~~~~g~~~~A~~l~~~m~~~~~p~~~~y----------~~Li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~ty~~li~~ 392 (631)
|...|++++|...|+++.+..+.+...+ ..+...+.+.|++++|..+|+++.+.... .+..++..+...
T Consensus 143 ~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 222 (365)
T 4eqf_A 143 YTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVL 222 (365)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHH
T ss_pred HHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHH
Confidence 8888888888888888765322222222 33466666667777777777776664221 145566666666
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 036072 393 LLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYN 472 (631)
Q Consensus 393 ~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~ 472 (631)
|...|++++|++.|+++.+.. |+ +..+|..+...|...|++++|...|+++.+... .+..++.
T Consensus 223 ~~~~g~~~~A~~~~~~al~~~--p~--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~ 285 (365)
T 4eqf_A 223 FHLSGEFNRAIDAFNAALTVR--PE--------------DYSLWNRLGATLANGDRSEEAVEAYTRALEIQP-GFIRSRY 285 (365)
T ss_dssp HHHHTCHHHHHHHHHHHHHHC--TT--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHhC--CC--------------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC-CchHHHH
Confidence 666666666666666665532 22 233444455555555555555555555554321 1344555
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHH
Q 036072 473 ALIKLMKIQKMPDEAVRIYKEMVR 496 (631)
Q Consensus 473 ~li~~~~~~g~~~~A~~l~~~m~~ 496 (631)
.+..+|...|++++|...|+++.+
T Consensus 286 ~l~~~~~~~g~~~~A~~~~~~al~ 309 (365)
T 4eqf_A 286 NLGISCINLGAYREAVSNFLTALS 309 (365)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHH
Confidence 555555555555555555555543
|
| >3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.70 E-value=2.5e-17 Score=183.36 Aligned_cols=127 Identities=20% Similarity=0.161 Sum_probs=115.7
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHH---CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 036072 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVR---SGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYT 542 (631)
Q Consensus 466 p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~---~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 542 (631)
--..|||+||.+||+.|++++|.++|.+|.+ .|+.||..|||+||.+||+.|++++|.++|++|.+.|+.||..|||
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 3456999999999999999999999988764 5899999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHcCCH-HHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHH
Q 036072 543 VLIGGLISQDRS-GEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVL 592 (631)
Q Consensus 543 ~li~~~~~~g~~-~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A 592 (631)
+||.++++.|+. ++|.++|++|.+.|+.||..+|++++..+.+.+-++.+
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~V 255 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAV 255 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHH
Confidence 999999999985 78999999999999999999999998877665433333
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.70 E-value=6e-15 Score=149.75 Aligned_cols=265 Identities=10% Similarity=-0.002 Sum_probs=160.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENL 324 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~ 324 (631)
...|..+...+...|++++|..+|+++.+..+.+..++..+..++...|++++|.+.|+.+.+.. +.+..++..+...|
T Consensus 21 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 21 HENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp SSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 34456677788888899999999988888777777888888888888888888888888888764 45677788888888
Q ss_pred HcCCChHHHHHHHHHHhcccCCChhhHHHH--------------HH-HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 036072 325 GRSKLPKEAQLLFDKLKHRFTPNLTTYTVL--------------LG-GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIM 389 (631)
Q Consensus 325 ~~~g~~~~A~~l~~~m~~~~~p~~~~y~~L--------------i~-~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~l 389 (631)
...|++++|...++++.+..+.+...+..+ .. .+...|++++|...++++.+.. +.+...+..+
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 178 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASL 178 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 888888888888888766544444444444 11 2334444445555544444432 1133444444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHH
Q 036072 390 LEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGL 469 (631)
Q Consensus 390 i~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ 469 (631)
...+.. .|++++|.+.++++.+... .+..
T Consensus 179 a~~~~~--------------------------------------------------~~~~~~A~~~~~~~~~~~~-~~~~ 207 (327)
T 3cv0_A 179 GVLYNL--------------------------------------------------SNNYDSAAANLRRAVELRP-DDAQ 207 (327)
T ss_dssp HHHHHH--------------------------------------------------TTCHHHHHHHHHHHHHHCT-TCHH
T ss_pred HHHHHH--------------------------------------------------hccHHHHHHHHHHHHHhCC-CcHH
Confidence 444444 4555555555554444321 2344
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-----------CH
Q 036072 470 TYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP-----------DD 538 (631)
Q Consensus 470 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p-----------~~ 538 (631)
.+..+...+...|++++|...++++.+.. +.+..++..+..+|...|++++|.+.++++.+..... +.
T Consensus 208 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 286 (327)
T 3cv0_A 208 LWNKLGATLANGNRPQEALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATR 286 (327)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCH
Confidence 55555555555555666665555555432 2234555556666666666666666666555432111 24
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHH
Q 036072 539 NSYTVLIGGLISQDRSGEAYKYLEE 563 (631)
Q Consensus 539 ~t~~~li~~~~~~g~~~~A~~ll~~ 563 (631)
.+|..+..++...|+.++|..++++
T Consensus 287 ~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 287 SMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 5556666666666666666665543
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.69 E-value=1.8e-12 Score=140.49 Aligned_cols=334 Identities=12% Similarity=0.085 Sum_probs=279.0
Q ss_pred hhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHH----ccCHHH
Q 036072 226 RPAFRFFCWAGDKPGFAHNSRTYNSMMSILGR----ARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAA----AKERKK 297 (631)
Q Consensus 226 ~~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~----~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~----~g~~~~ 297 (631)
..|+..|....+. | +...+..+-..|.. .+++++|...|++..+.| +...+..|...|.. .+++++
T Consensus 60 ~~A~~~~~~a~~~-~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~ 133 (490)
T 2xm6_A 60 TQAMDWFRRAAEQ-G---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG--LPQAQQNLGVMYHEGNGVKVDKAE 133 (490)
T ss_dssp HHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHH
T ss_pred HHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHH
Confidence 4588888776544 2 47788888888888 899999999999998876 56777778888888 789999
Q ss_pred HHHHHHHHHhCCCCcCHHHHHHHHHHHHc----CCChHHHHHHHHHHhcccCCChhhHHHHHHHHHh----cCCHHHHHH
Q 036072 298 AVAIFELMNKYKFKAGVDTINCLLENLGR----SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCR----VKNLMEAGR 369 (631)
Q Consensus 298 A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~----~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~----~g~~~~A~~ 369 (631)
|++.|+...+.| +...+..|...|.. .++.++|...|++..+. .+...+..|...|.. .+++++|.+
T Consensus 134 A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~~~~~A~~ 208 (490)
T 2xm6_A 134 SVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQ--GNVWSCNQLGYMYSRGLGVERNDAISAQ 208 (490)
T ss_dssp HHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHH
T ss_pred HHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHhcCCCCCcCHHHHHH
Confidence 999999999876 57778888888877 78999999999997653 377888899999988 899999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhc
Q 036072 370 VWNEMIDKGFKPDVVAHNIMLEGLLK----IGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGN 445 (631)
Q Consensus 370 l~~~m~~~g~~p~~~ty~~li~~~~~----~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~ 445 (631)
.|++..+.| +..++..+...|.. .++.++|.++|+...+.|. ...+..+...|..
T Consensus 209 ~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~------------------~~a~~~lg~~y~~ 267 (490)
T 2xm6_A 209 WYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQGN------------------SIAQFRLGYILEQ 267 (490)
T ss_dssp HHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTTC------------------HHHHHHHHHHHHH
T ss_pred HHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC------------------HHHHHHHHHHHHC
Confidence 999999875 66778888888886 7899999999999887642 2233334445555
Q ss_pred ----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 036072 446 ----RRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQ-----KMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516 (631)
Q Consensus 446 ----~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~ 516 (631)
.++.++|...|+...+.| +...+..+...|... ++.++|...|++..+.| +...+..|...|...
T Consensus 268 g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~ 341 (490)
T 2xm6_A 268 GLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQANLGAIYFRL 341 (490)
T ss_dssp TTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHS
T ss_pred CCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHHHHHHHHHHhC
Confidence 799999999999988764 566777788888887 89999999999999876 456778888888886
Q ss_pred C---CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----
Q 036072 517 G---NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLIS----QDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR---- 585 (631)
Q Consensus 517 g---~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~---- 585 (631)
| +.++|.+.|++..+.| +...+..|...|.. .+++++|.++|++..+.| +...+..|...|..
T Consensus 342 g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~Lg~~y~~g~g~ 415 (490)
T 2xm6_A 342 GSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQLGEIYYYGLGV 415 (490)
T ss_dssp CCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSS
T ss_pred CCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCC
Confidence 6 7899999999999874 78888899999998 899999999999999976 56788889999998
Q ss_pred cCCHHHHHHHHHHHHhcC
Q 036072 586 AGRSYVLDELAQKMRFSG 603 (631)
Q Consensus 586 ~g~~~~A~~l~~~m~~~g 603 (631)
.++.++|.+++++....|
T Consensus 416 ~~d~~~A~~~~~~A~~~~ 433 (490)
T 2xm6_A 416 ERDYVQAWAWFDTASTND 433 (490)
T ss_dssp CCCHHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHCC
Confidence 899999999999988776
|
| >3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A | Back alignment and structure |
|---|
Probab=99.69 E-value=1.2e-14 Score=147.51 Aligned_cols=276 Identities=10% Similarity=-0.045 Sum_probs=195.0
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 036072 316 TINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLK 395 (631)
Q Consensus 316 ~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~ 395 (631)
.+..+...+...|++++|..+|+++.+..+.+..++..+...+...|++++|...|+++.+.. +.+..++..+...+..
T Consensus 23 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 101 (327)
T 3cv0_A 23 NPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTN 101 (327)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHHHH
Confidence 344455556666666666666666655444556666666666666677777777666666542 2345566666666777
Q ss_pred cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHH-HH-HHhccCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 036072 396 IGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCL-IT-GFGNRRRMDIVYDLLKEMEERGCPPDGLTYNA 473 (631)
Q Consensus 396 ~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~l-i~-~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~ 473 (631)
.|++++|.+.++.+.+..... ...+..+..... +......+ .. .+...|++++|..+++++.+.... +...+..
T Consensus 102 ~~~~~~A~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~ 177 (327)
T 3cv0_A 102 EHNANAALASLRAWLLSQPQY-EQLGSVNLQADV--DIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMNPN-DAQLHAS 177 (327)
T ss_dssp TTCHHHHHHHHHHHHHTSTTT-TTC----------------------CCTTSHHHHHHHHHHHHHHHHHSTT-CHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCCcc-HHHHHHHhHHHH--HHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhCCC-CHHHHHH
Confidence 777777777776666542111 111111100000 00001111 12 367788999999999999886433 7889999
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 036072 474 LIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDR 553 (631)
Q Consensus 474 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 553 (631)
+...+...|++++|.++++++.+.. +.+..++..+..+|...|++++|...++++.+... .+..+|..+...|...|+
T Consensus 178 la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 178 LGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQEALDAYNRALDINP-GYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHhcc
Confidence 9999999999999999999998864 44678899999999999999999999999988643 368899999999999999
Q ss_pred HHHHHHHHHHHHHCCCCC-----------CHHHHHHHHHHHHhcCCHHHHHHHHHH
Q 036072 554 SGEAYKYLEEMLEKGMKA-----------PVLDYNKFAADLSRAGRSYVLDELAQK 598 (631)
Q Consensus 554 ~~~A~~ll~~m~~~g~~p-----------~~~~~~~li~~~~~~g~~~~A~~l~~~ 598 (631)
+++|.+.++++.+..... +...|..+..++.+.|+.++|..++++
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 311 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQ 311 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 999999999998753221 467899999999999999999998864
|
| >2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli} | Back alignment and structure |
|---|
Probab=99.66 E-value=1e-11 Score=134.50 Aligned_cols=321 Identities=11% Similarity=0.060 Sum_probs=270.1
Q ss_pred CHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHH----ccCHHHHHHHHHHHHhCCCCcCHH
Q 036072 244 NSRTYNSMMSILGR----ARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAA----AKERKKAVAIFELMNKYKFKAGVD 315 (631)
Q Consensus 244 ~~~~y~~li~~~~~----~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~----~g~~~~A~~v~~~m~~~g~~~~~~ 315 (631)
+...+..+-..|.. .+++++|...|++..+.| +...+..|...|.. .++.++|++.|+...+.| +..
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~--~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~ 112 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG--YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LPQ 112 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHH
Confidence 46777778778877 899999999999998875 56788888899998 899999999999999875 667
Q ss_pred HHHHHHHHHHc----CCChHHHHHHHHHHhcccCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 036072 316 TINCLLENLGR----SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCR----VKNLMEAGRVWNEMIDKGFKPDVVAHN 387 (631)
Q Consensus 316 ~~~~Ll~~~~~----~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~ty~ 387 (631)
.+..|...|.. .+++++|...|++..+. -+...+..|...|.. .+++++|.+.|++..+.| +...+.
T Consensus 113 a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~--~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a~~ 187 (490)
T 2xm6_A 113 AQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQ--GRDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWSCN 187 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC--CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 78888888888 78999999999997653 267788888888887 789999999999999875 678888
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhc----cCCHHHHHHHHHHH
Q 036072 388 IMLEGLLK----IGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGN----RRRMDIVYDLLKEM 459 (631)
Q Consensus 388 ~li~~~~~----~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m 459 (631)
.+...|.. .++.++|.+.|+...+.|. ...+..+...|.. .+++++|..+|+..
T Consensus 188 ~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~------------------~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a 249 (490)
T 2xm6_A 188 QLGYMYSRGLGVERNDAISAQWYRKSATSGD------------------ELGQLHLADMYYFGIGVTQDYTQSRVLFSQS 249 (490)
T ss_dssp HHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC------------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCCcCHHHHHHHHHHHHHCCC------------------HHHHHHHHHHHHcCCCCCCCHHHHHHHHHHH
Confidence 88888888 8999999999999887652 2233444555554 78999999999998
Q ss_pred HHcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc-----CCHHHHHHHHHHHH
Q 036072 460 EERGCPPDGLTYNALIKLMKI----QKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT-----GNYEMGRKVWDEMI 530 (631)
Q Consensus 460 ~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~-----g~~~~A~~~~~~m~ 530 (631)
.+.| +...+..+...|.. .++.++|..+|++..+.| +...+..|...|... +++++|...|++..
T Consensus 250 ~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~ 323 (490)
T 2xm6_A 250 AEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSA 323 (490)
T ss_dssp HTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHH
T ss_pred HHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHH
Confidence 8764 55667777777777 899999999999998875 556778888888887 89999999999999
Q ss_pred HcCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcC
Q 036072 531 RRGCCPDDNSYTVLIGGLISQD---RSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR----AGRSYVLDELAQKMRFSG 603 (631)
Q Consensus 531 ~~g~~p~~~t~~~li~~~~~~g---~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g 603 (631)
+.| +...+..+...|...| +.++|.++|++..+.| +...+..|...|.. .+++++|.+++++.-+.|
T Consensus 324 ~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~ 397 (490)
T 2xm6_A 324 EQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG 397 (490)
T ss_dssp HTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred hcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC
Confidence 875 5677888888888766 7899999999999875 67788899999998 899999999999998877
Q ss_pred C
Q 036072 604 K 604 (631)
Q Consensus 604 ~ 604 (631)
.
T Consensus 398 ~ 398 (490)
T 2xm6_A 398 L 398 (490)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.66 E-value=4e-14 Score=142.44 Aligned_cols=250 Identities=11% Similarity=0.076 Sum_probs=135.9
Q ss_pred HHHHccCHHHHHHHHHHHHhCCCCcC--HHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHH
Q 036072 288 AFAAAKERKKAVAIFELMNKYKFKAG--VDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLM 365 (631)
Q Consensus 288 ~~~~~g~~~~A~~v~~~m~~~g~~~~--~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~ 365 (631)
.....|+++.|+..++..... .|+ ......+.++|...|+++.|...++. ..+|+..++..+...+...++.+
T Consensus 8 ~~~~~g~y~~ai~~~~~~~~~--~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~---~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 8 NAFYIGSYQQCINEAQRVKPS--SPERDVERDVFLYRAYLAQRKYGVVLDEIKP---SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHTTCHHHHHHHHHHSCCC--SHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT---TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHhcccC--CchhhHHHHHHHHHHHHHCCCHHHHHHHhcc---cCChhHHHHHHHHHHHcCCCcHH
Confidence 334455555555555544332 122 22334445556666666555543322 23344555555666666666666
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHh
Q 036072 366 EAGRVWNEMIDKGFKPD-VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFG 444 (631)
Q Consensus 366 ~A~~l~~~m~~~g~~p~-~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~ 444 (631)
+|++.++++...+..|+ ...+..+...+...|++++|++.++. |+ +...+..++..|.
T Consensus 83 ~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~--------------~~~~~~~l~~~~~ 141 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GD--------------SLECMAMTVQILL 141 (291)
T ss_dssp HHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CC--------------SHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CC--------------CHHHHHHHHHHHH
Confidence 66666666655543332 33344444556666666666666554 11 2334444555556
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHH---HHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH
Q 036072 445 NRRRMDIVYDLLKEMEERGCPPDGLTY---NALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEM 521 (631)
Q Consensus 445 ~~g~~~~A~~l~~~m~~~g~~p~~~t~---~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~ 521 (631)
+.|++++|.+.|+.+.+.. |+.... ...+..+...|++++|..+|+++.+. .+.+...++.+..+|.+.|++++
T Consensus 142 ~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~e 218 (291)
T 3mkr_A 142 KLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEA 218 (291)
T ss_dssp HTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHH
T ss_pred HCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHH
Confidence 6666666666666665542 332111 11222333346667777777776665 24456666666677777777777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH-HHHHHHHHHHC
Q 036072 522 GRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGE-AYKYLEEMLEK 567 (631)
Q Consensus 522 A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~-A~~ll~~m~~~ 567 (631)
|...|++..+.... +..++..++..+...|+.++ +.++++++.+.
T Consensus 219 A~~~l~~al~~~p~-~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~ 264 (291)
T 3mkr_A 219 AEGVLQEALDKDSG-HPETLINLVVLSQHLGKPPEVTNRYLSQLKDA 264 (291)
T ss_dssp HHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHh
Confidence 77777776665332 56666666666666666654 45666666654
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.63 E-value=3.6e-12 Score=139.52 Aligned_cols=353 Identities=11% Similarity=0.052 Sum_probs=218.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 036072 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLEN 323 (631)
Q Consensus 244 ~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~ 323 (631)
|...|..++. +.+.|+++.|..+|+++.+..+.+...|..++..+.+.|++++|.++|+.+.+.. |+...|...+..
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~--p~~~lw~~~~~~ 88 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQFPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV--LHIDLWKCYLSY 88 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC--CCHHHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC--CChHHHHHHHHH
Confidence 4566666666 3556667777777777666666666666666666666677777777776666653 455555555532
Q ss_pred H-HcCCChHHHHH----HHHHHhcc---cCCChhhHHHHHHHHHh---------cCCHHHHHHHHHHHHHcCCCCCHHHH
Q 036072 324 L-GRSKLPKEAQL----LFDKLKHR---FTPNLTTYTVLLGGWCR---------VKNLMEAGRVWNEMIDKGFKPDVVAH 386 (631)
Q Consensus 324 ~-~~~g~~~~A~~----l~~~m~~~---~~p~~~~y~~Li~~~~~---------~g~~~~A~~l~~~m~~~g~~p~~~ty 386 (631)
. ...|+.+.|.+ +|+..... .+.+...|..++....+ .|+++.|..+|++..+.........|
T Consensus 89 ~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~ 168 (530)
T 2ooe_A 89 VRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLW 168 (530)
T ss_dssp HHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHH
T ss_pred HHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHH
Confidence 2 23455554443 44444321 12234556555554443 56666666666666652111111222
Q ss_pred HHHHHHH-------------HHcCCHHHHHHHHHHHH------HcC---CCCc--------HHHHHH-------------
Q 036072 387 NIMLEGL-------------LKIGKRSDAIKLFEVMK------AKG---PSPN--------VRSYTI------------- 423 (631)
Q Consensus 387 ~~li~~~-------------~~~g~~~~A~~ll~~m~------~~g---~~p~--------~~~~~~------------- 423 (631)
....... .+.++++.|..++.++. +.. +.|+ ...|..
T Consensus 169 ~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~ 248 (530)
T 2ooe_A 169 RDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTE 248 (530)
T ss_dssp HHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCS
T ss_pred HHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCC
Confidence 2221110 01233444444444321 110 1111 011111
Q ss_pred ---------------HHHHHhhcCHHHHHHHHHHHhc-------cCCHH-------HHHHHHHHHHHcCCCCCHHHHHHH
Q 036072 424 ---------------MIWKFCKQNAAVYTCLITGFGN-------RRRMD-------IVYDLLKEMEERGCPPDGLTYNAL 474 (631)
Q Consensus 424 ---------------li~~~~~~~~~~~~~li~~~~~-------~g~~~-------~A~~l~~~m~~~g~~p~~~t~~~l 474 (631)
.+... -.++..|..++..+.+ .|+++ +|..+|++..+.-.+-+...|..+
T Consensus 249 ~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~ 327 (530)
T 2ooe_A 249 DQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAY 327 (530)
T ss_dssp CSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHH
T ss_pred cchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHhCcccHHHHHHH
Confidence 11111 1156677777777765 68876 899999988763233467888899
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH-HHHc
Q 036072 475 IKLMKIQKMPDEAVRIYKEMVRSGFKPT--IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGG-LISQ 551 (631)
Q Consensus 475 i~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~-~~~~ 551 (631)
+..+.+.|++++|..+|+++.+. .|+ ...|..++..+.+.|++++|.++|++..+.... +...|...... +...
T Consensus 328 ~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~~~-~~~~~~~~a~~~~~~~ 404 (530)
T 2ooe_A 328 ADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALMEYYCS 404 (530)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCTTC-CTHHHHHHHHHHHHHT
T ss_pred HHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhccCC-chHHHHHHHHHHHHHc
Confidence 99999999999999999999985 443 357888899889999999999999999875322 23333322222 3368
Q ss_pred CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 036072 552 DRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGK 604 (631)
Q Consensus 552 g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 604 (631)
|+.++|.++|++.++.. +-+...|..++..+.+.|+.++|..++++....+.
T Consensus 405 ~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~ 456 (530)
T 2ooe_A 405 KDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGS 456 (530)
T ss_dssp CCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCC
T ss_pred CChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccC
Confidence 99999999999998763 34578899999999999999999999999887653
|
| >3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus} | Back alignment and structure |
|---|
Probab=99.62 E-value=1.4e-13 Score=138.40 Aligned_cols=254 Identities=10% Similarity=0.012 Sum_probs=205.5
Q ss_pred HHHHcCCChHHHHHHHHHHhcccCCC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH
Q 036072 322 ENLGRSKLPKEAQLLFDKLKHRFTPN-LTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRS 400 (631)
Q Consensus 322 ~~~~~~g~~~~A~~l~~~m~~~~~p~-~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~ 400 (631)
+-....|.+..|...++......+.+ ......+.++|...|++++|...++. .-.|+..++..+...+...++.+
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~----~~~~~~~a~~~la~~~~~~~~~~ 82 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKP----SSAPELQAVRMFAEYLASHSRRD 82 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCT----TSCHHHHHHHHHHHHHHCSTTHH
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhcc----cCChhHHHHHHHHHHHcCCCcHH
Confidence 44556899999999988765432222 23556678999999999999987755 24567788899999999999999
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh
Q 036072 401 DAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKI 480 (631)
Q Consensus 401 ~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~ 480 (631)
+|++.++++...+..|+ +...+..+...|...|++++|++.+++ +.+...+..+...+.+
T Consensus 83 ~A~~~l~~ll~~~~~P~--------------~~~~~~~la~~~~~~g~~~~Al~~l~~------~~~~~~~~~l~~~~~~ 142 (291)
T 3mkr_A 83 AIVAELDREMSRSVDVT--------------NTTFLLMAASIYFYDQNPDAALRTLHQ------GDSLECMAMTVQILLK 142 (291)
T ss_dssp HHHHHHHHHHHSCCCCS--------------CHHHHHHHHHHHHHTTCHHHHHHHHTT------CCSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccCCC--------------CHHHHHHHHHHHHHCCCHHHHHHHHhC------CCCHHHHHHHHHHHHH
Confidence 99999999998876777 344455667888999999999999987 4678899999999999
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHH---HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 036072 481 QKMPDEAVRIYKEMVRSGFKPTIHTY---NMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEA 557 (631)
Q Consensus 481 ~g~~~~A~~l~~~m~~~g~~p~~~t~---~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 557 (631)
.|++++|.+.|+++.+.. |+.... ..++..+...|++++|..+|+++.+.. +.+...|+.+..++.+.|++++|
T Consensus 143 ~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~~g~~~eA 219 (291)
T 3mkr_A 143 LDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMAQGRWEAA 219 (291)
T ss_dssp TTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred CCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999864 553211 223333444589999999999999873 34889999999999999999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH-HHHHHHHHHhcC
Q 036072 558 YKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYV-LDELAQKMRFSG 603 (631)
Q Consensus 558 ~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~-A~~l~~~m~~~g 603 (631)
...|+++++.. +-+..++..++..+...|+.++ +.++++++....
T Consensus 220 ~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~ 265 (291)
T 3mkr_A 220 EGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAH 265 (291)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 99999999874 4577889999999999999876 678998887654
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.62 E-value=2.9e-15 Score=155.35 Aligned_cols=221 Identities=8% Similarity=0.061 Sum_probs=59.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 036072 246 RTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG 325 (631)
Q Consensus 246 ~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~ 325 (631)
.+|..+..++.+.|++++|++.|.+. .+..+|..++.++...|++++|+..++..++. .+++.+.+.|+.+|.
T Consensus 33 ~vWs~La~A~l~~g~~~eAIdsfika-----~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~ 105 (449)
T 1b89_A 33 AVWSQLAKAQLQKGMVKEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALA 105 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHcC-----CCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHH
Confidence 35555555555555555555555332 23345555555555555555555544444442 233444555555555
Q ss_pred cCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 036072 326 RSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKL 405 (631)
Q Consensus 326 ~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~l 405 (631)
+.|+++++.++++ .|+..+|+.+...|...|.+++|...|..+ ..|..++.++.+.|++++|.+.
T Consensus 106 Klg~l~e~e~f~~------~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea 170 (449)
T 1b89_A 106 KTNRLAELEEFIN------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDG 170 (449)
T ss_dssp ---CHHHHTTTTT------CC----------------CTTTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHH
T ss_pred HhCCHHHHHHHHc------CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHH
Confidence 5555555554442 134445555555555555555555555544 1355555555555555555555
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 036072 406 FEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPD 485 (631)
Q Consensus 406 l~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 485 (631)
+..+. ++.+|..++.+|...|+++.|...... +...+.-...++..|.+.|.++
T Consensus 171 ~~KA~---------------------~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 171 ARKAN---------------------STRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFE 224 (449)
T ss_dssp HHHHT---------------------CHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHcC---------------------CchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHhhHHHHHHHHHHCCCHH
Confidence 55440 223344444455555555555333322 1122222334555555555555
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 036072 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515 (631)
Q Consensus 486 ~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~ 515 (631)
+|..+++...... .-....|+-|.-+|++
T Consensus 225 Eai~lLe~aL~le-~ah~~~ftel~il~~k 253 (449)
T 1b89_A 225 ELITMLEAALGLE-RAHMGMFTELAILYSK 253 (449)
T ss_dssp HHHHHHHHHTTST-TCCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCCc-HHHHHHHHHHHHHHHh
Confidence 5555555554332 2334444444444443
|
| >1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3 | Back alignment and structure |
|---|
Probab=99.60 E-value=6.4e-15 Score=152.79 Aligned_cols=323 Identities=11% Similarity=0.058 Sum_probs=170.8
Q ss_pred hHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 036072 227 PAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMN 306 (631)
Q Consensus 227 ~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~ 306 (631)
.|.+.|.. .+|..+|..++..+...|++++|+.+++...+ ...++.+...++.+|.+.|+++++.++++
T Consensus 50 eAIdsfik-------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ark-~~~~~~i~~~Li~~Y~Klg~l~e~e~f~~--- 118 (449)
T 1b89_A 50 EAIDSYIK-------ADDPSSYMEVVQAANTSGNWEELVKYLQMARK-KARESYVETELIFALAKTNRLAELEEFIN--- 118 (449)
T ss_dssp -------------------------------------------------------------------CHHHHTTTTT---
T ss_pred HHHHHHHc-------CCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHH-hCccchhHHHHHHHHHHhCCHHHHHHHHc---
Confidence 47777753 25788999999999999999999997776665 35567789999999999999999998884
Q ss_pred hCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 036072 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH 386 (631)
Q Consensus 307 ~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty 386 (631)
.|+..+|+.+.+.|...|.+++|...|..+ ..|..++.++.+.|++++|.+.+.++ .++.+|
T Consensus 119 ----~pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a--------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~W 180 (449)
T 1b89_A 119 ----GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV--------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTW 180 (449)
T ss_dssp ----CC----------------CTTTHHHHHHHT--------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHH
T ss_pred ----CCcHHHHHHHHHHHHHcCCHHHHHHHHHHh--------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhH
Confidence 477789999999999999999999999977 47999999999999999999999998 278999
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC
Q 036072 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPP 466 (631)
Q Consensus 387 ~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 466 (631)
..++.+|...|+++.|......+. ..|+ ....++..|.+.|++++|..+++...... +-
T Consensus 181 k~v~~aCv~~~ef~lA~~~~l~L~---~~ad-----------------~l~~lv~~Yek~G~~eEai~lLe~aL~le-~a 239 (449)
T 1b89_A 181 KEVCFACVDGKEFRLAQMCGLHIV---VHAD-----------------ELEELINYYQDRGYFEELITMLEAALGLE-RA 239 (449)
T ss_dssp HHHHHHHHHTTCHHHHHHTTTTTT---TCHH-----------------HHHHHHHHHHHTTCHHHHHHHHHHHTTST-TC
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHH---hCHh-----------------hHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HH
Confidence 999999999999999955443321 2222 23357888999999999999999977554 44
Q ss_pred CHHHHHHHHHHHHhc--CChhHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-C---
Q 036072 467 DGLTYNALIKLMKIQ--KMPDEAVRIYKEMVRSGFKP------TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG-C--- 534 (631)
Q Consensus 467 ~~~t~~~li~~~~~~--g~~~~A~~l~~~m~~~g~~p------~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g-~--- 534 (631)
...+|+-|--+|++- ++..+.++.|.. +.+++| +...|.-++-.|.+.++++.|... |.+.. .
T Consensus 240 h~~~ftel~il~~ky~p~k~~ehl~~~~~--~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t---m~~h~~~a~~ 314 (449)
T 1b89_A 240 HMGMFTELAILYSKFKPQKMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNHPTDAWK 314 (449)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHST--TSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH---HHHSTTTTCC
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHH--HhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHHHHH---HHhCChhhhh
Confidence 567777777777654 344455555432 122222 345688888999999999988774 33331 1
Q ss_pred ----------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 036072 535 ----------CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGK 604 (631)
Q Consensus 535 ----------~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 604 (631)
..|...|-..|..|.. ...+++.-+-..+...+ ..+..+..+.+.|+...+..+++.+...+.
T Consensus 315 ~~~f~~~~~kv~n~elyYkai~fyl~--~~p~~l~~ll~~l~~~l-----d~~r~v~~~~~~~~l~l~~~yl~~v~~~n~ 387 (449)
T 1b89_A 315 EGQFKDIITKVANVELYYRAIQFYLE--FKPLLLNDLLMVLSPRL-----DHTRAVNYFSKVKQLPLVKPYLRSVQNHNN 387 (449)
T ss_dssp HHHHHHHHHHCSSTHHHHHHHHHHHH--HCGGGHHHHHHHHGGGC-----CHHHHHHHHHHTTCTTTTHHHHHHHHTTCC
T ss_pred hHHHHHHHhchhHHHHHHHHHHHHHh--cCHHHHHHHHHHHHhcc-----CcHHHHHHHHHcCCcHHHHHHHHHHHHhhH
Confidence 1245566666666652 11222222222221111 134566777888888888888888777776
Q ss_pred CchHHHH
Q 036072 605 FEVSNVL 611 (631)
Q Consensus 605 ~~~~~~l 611 (631)
..+++.+
T Consensus 388 ~~vneal 394 (449)
T 1b89_A 388 KSVNESL 394 (449)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 6555555
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.56 E-value=2.7e-12 Score=137.74 Aligned_cols=341 Identities=12% Similarity=-0.007 Sum_probs=197.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHC---------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhC-----C-
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEK---------GLLSMETFKIAMNAFAAAKERKKAVAIFELMNKY-----K- 309 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~---------g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~-----g- 309 (631)
...||.+..++...|++++|++.|++..+. .+....+|+.+..+|...|++++|+..++...+. +
T Consensus 51 a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~ 130 (472)
T 4g1t_A 51 ATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSP 130 (472)
T ss_dssp CHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCS
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccc
Confidence 566777777777788888888877765431 1224457777777888888888887777766542 1
Q ss_pred -CCcCHHHHHHHHHHHHc--CCChHHHHHHHHHHhcccCCChhhHHHHHHHH---HhcCCHHHHHHHHHHHHHcCCCCCH
Q 036072 310 -FKAGVDTINCLLENLGR--SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGW---CRVKNLMEAGRVWNEMIDKGFKPDV 383 (631)
Q Consensus 310 -~~~~~~~~~~Ll~~~~~--~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~---~~~g~~~~A~~l~~~m~~~g~~p~~ 383 (631)
......++..+..++.. .+++++|...|++..+..+.+...+..+..++ ...++.++|++.+++..+.. +.+.
T Consensus 131 ~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~ 209 (472)
T 4g1t_A 131 YRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKKPKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQ 209 (472)
T ss_dssp SCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCH
T ss_pred cchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-Ccch
Confidence 01234455554444443 34677888888777655455555555554443 34466677777777766642 2244
Q ss_pred HHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHH
Q 036072 384 VAHNIMLEGLLK----IGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEM 459 (631)
Q Consensus 384 ~ty~~li~~~~~----~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m 459 (631)
.++..+...+.. .|+.++|.+++++..... |+ +..++..+...|...|++++|...+.+.
T Consensus 210 ~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~--~~--------------~~~~~~~lg~~~~~~~~~~~A~~~~~~a 273 (472)
T 4g1t_A 210 YLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA--PG--------------VTDVLRSAAKFYRRKDEPDKAIELLKKA 273 (472)
T ss_dssp HHHHHHHHHHHHCC------CHHHHHHHHHHHHC--SS--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC--cc--------------HHHHHHHHHHHHHHcCchHHHHHHHHHH
Confidence 455544444443 356677777777766542 22 3445556677777778888888888777
Q ss_pred HHcCCCCCHHHHHHHHHHHHh-------------------cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 036072 460 EERGCPPDGLTYNALIKLMKI-------------------QKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE 520 (631)
Q Consensus 460 ~~~g~~p~~~t~~~li~~~~~-------------------~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~ 520 (631)
.+.... +..++..+...|.. .+..++|...+++..+.. +.+..++..+...|...|+++
T Consensus 274 l~~~p~-~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~~~~~~~~~ 351 (472)
T 4g1t_A 274 LEYIPN-NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASLHALADQYE 351 (472)
T ss_dssp HHHSTT-CHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHHHHHTTCHH
T ss_pred HHhCCC-hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHHHHHhccHH
Confidence 765322 44555555444422 122456666666666543 233455667777788888888
Q ss_pred HHHHHHHHHHHcCCCCCHH--HHHHHHH-HHHHcCCHHHHHHHHHHHHHCCC-----------------------CCCHH
Q 036072 521 MGRKVWDEMIRRGCCPDDN--SYTVLIG-GLISQDRSGEAYKYLEEMLEKGM-----------------------KAPVL 574 (631)
Q Consensus 521 ~A~~~~~~m~~~g~~p~~~--t~~~li~-~~~~~g~~~~A~~ll~~m~~~g~-----------------------~p~~~ 574 (631)
+|...|++.++....+... .+..+.. .+...|+.++|+..|++.++... +.+..
T Consensus 352 ~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~~~~~~l~~~~~~~l~~~p~~~~ 431 (472)
T 4g1t_A 352 EAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREKEKMKDKLQKIAKMRLSKNGADSE 431 (472)
T ss_dssp HHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHHHHHHHHHHHHHHHHHHHCC-CTT
T ss_pred HHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHhCCCCHH
Confidence 8888888777654332211 1222222 23356777778777777665321 23456
Q ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHhcCC
Q 036072 575 DYNKFAADLSRAGRSYVLDELAQKMRFSGK 604 (631)
Q Consensus 575 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 604 (631)
+|..+..+|...|++++|++.+++..+.|.
T Consensus 432 ~~~~LG~~~~~~g~~~~A~~~y~kALe~~~ 461 (472)
T 4g1t_A 432 ALHVLAFLQELNEKMQQADEDSERGLESGS 461 (472)
T ss_dssp HHHHHHHHHHHHHHCC--------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 788899999999999999999999877664
|
| >2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.55 E-value=1e-10 Score=127.92 Aligned_cols=352 Identities=11% Similarity=0.070 Sum_probs=225.1
Q ss_pred hHHHHHHHhhcCCCCCCCHHHHHHHHHHH-HhcCChhHHHH----HHHHHHHC-CC--CCHHHHHHHHHHHHH-------
Q 036072 227 PAFRFFCWAGDKPGFAHNSRTYNSMMSIL-GRARQFETMVS----MLEEMGEK-GL--LSMETFKIAMNAFAA------- 291 (631)
Q Consensus 227 ~A~~~f~~~~~~~g~~p~~~~y~~li~~~-~~~g~~~~A~~----l~~~m~~~-g~--~~~~~~~~li~~~~~------- 291 (631)
.|.++|+...... |+...|...+... ...|+++.|.+ +|+..... |. .+...|...+.....
T Consensus 64 ~a~~~~~ral~~~---p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~ 140 (530)
T 2ooe_A 64 KVEKLFQRCLMKV---LHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSY 140 (530)
T ss_dssp HHHHHHHHHTTTC---CCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSST
T ss_pred HHHHHHHHHHhcC---CChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccH
Confidence 3666666554322 4555666555432 33455555444 55544332 22 345566665555443
Q ss_pred --ccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH-------------HcCCChHHHHHHHHHHh------cc----cCC
Q 036072 292 --AKERKKAVAIFELMNKYKFKAGVDTINCLLENL-------------GRSKLPKEAQLLFDKLK------HR----FTP 346 (631)
Q Consensus 292 --~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~-------------~~~g~~~~A~~l~~~m~------~~----~~p 346 (631)
.|+++.|..+|+..++.........|....... .+.+.+..|..++..+. +. ++|
T Consensus 141 ~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~~~~~~~~l~~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p 220 (530)
T 2ooe_A 141 AENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGINIHLAKKMIEDRSRDYMNARRVAKEYETVMKGLDRNAPSVPP 220 (530)
T ss_dssp THHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHTTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCC
T ss_pred HHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhchhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence 566777777777776631111122332221110 12234555655555421 11 233
Q ss_pred C--------hhhHHHHHHHHHhc----CCH----HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-------cCCHH---
Q 036072 347 N--------LTTYTVLLGGWCRV----KNL----MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLK-------IGKRS--- 400 (631)
Q Consensus 347 ~--------~~~y~~Li~~~~~~----g~~----~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~-------~g~~~--- 400 (631)
+ ...|...+...... ++. +.|..+|++.... .+-+...|..+...+.+ .|+++
T Consensus 221 ~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~ 299 (530)
T 2ooe_A 221 QNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAK 299 (530)
T ss_dssp C--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHH
T ss_pred CCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhh
Confidence 2 23444444332221 122 3566677777664 23356677777776665 67776
Q ss_pred ----HHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC--HHHHHHH
Q 036072 401 ----DAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPD--GLTYNAL 474 (631)
Q Consensus 401 ----~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~l 474 (631)
+|..+|++..+. +.|+ +...|..++..+.+.|++++|..+|+++.+. .|+ ...|..+
T Consensus 300 ~~~~~A~~~~~~Al~~-~~p~--------------~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~ 362 (530)
T 2ooe_A 300 LFSDEAANIYERAIST-LLKK--------------NMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQY 362 (530)
T ss_dssp HHHHHHHHHHHHHTTT-TCSS--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS--SSSCHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHH-hCcc--------------cHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc--cccCchHHHHHH
Confidence 788888877652 2344 4566777888888999999999999999985 343 3578888
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC
Q 036072 475 IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKS-YFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDR 553 (631)
Q Consensus 475 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~-~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~ 553 (631)
+..+.+.|+.++|.++|++..+.. ..+...|...... +...|+.++|..+|+..++... -+...|..++..+.+.|+
T Consensus 363 ~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p-~~~~~~~~~~~~~~~~g~ 440 (530)
T 2ooe_A 363 MKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNE 440 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHTTTTC
T ss_pred HHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCC-CCHHHHHHHHHHHHhCCC
Confidence 888899999999999999999753 2233333332222 3468999999999999987632 268899999999999999
Q ss_pred HHHHHHHHHHHHHCC-CCCC--HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036072 554 SGEAYKYLEEMLEKG-MKAP--VLDYNKFAADLSRAGRSYVLDELAQKMRF 601 (631)
Q Consensus 554 ~~~A~~ll~~m~~~g-~~p~--~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 601 (631)
.++|..+|++....+ ..|+ ...|..++......|+.+.+.++.+++.+
T Consensus 441 ~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~ 491 (530)
T 2ooe_A 441 DNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFT 491 (530)
T ss_dssp HHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHH
T ss_pred HhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 999999999999874 2332 45788889989999999999999988865
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.53 E-value=2.1e-12 Score=125.97 Aligned_cols=221 Identities=11% Similarity=0.066 Sum_probs=100.0
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccC---CC----hhhHHH
Q 036072 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT---PN----LTTYTV 353 (631)
Q Consensus 281 ~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~---p~----~~~y~~ 353 (631)
.+..+...+...|++++|+..|+.+.+.. .+..++..+..+|...|++++|...+++..+..+ ++ ..+|..
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~ 84 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFAR 84 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHH
Confidence 44444555555555555555555555444 4445555555555555555555555555433211 11 345555
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCH
Q 036072 354 LLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNA 433 (631)
Q Consensus 354 Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~ 433 (631)
+...+.+.|++++|...|++..+. .|+. ..+.+.|++++|.+.++.+... .|+ +.
T Consensus 85 l~~~~~~~~~~~~A~~~~~~a~~~--~~~~-------~~~~~~~~~~~a~~~~~~~~~~--~~~--------------~~ 139 (258)
T 3uq3_A 85 IGNAYHKLGDLKKTIEYYQKSLTE--HRTA-------DILTKLRNAEKELKKAEAEAYV--NPE--------------KA 139 (258)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCH-------HHHHHHHHHHHHHHHHHHHHHC--CHH--------------HH
T ss_pred HHHHHHHcccHHHHHHHHHHHHhc--Cchh-------HHHHHHhHHHHHHHHHHHHHHc--Ccc--------------hH
Confidence 555555555555555555555543 2221 2233344455555555554442 111 11
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036072 434 AVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSY 513 (631)
Q Consensus 434 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~ 513 (631)
..+..+...+...|++++|...|++..+... .+...|..+...|...|++++|...++++.+.. +.+...+..+..+|
T Consensus 140 ~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~ 217 (258)
T 3uq3_A 140 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAP-EDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 217 (258)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHH
Confidence 2233334444444444444444444443321 133444444444444444444444444444332 12233444444444
Q ss_pred HHcCCHHHHHHHHHHHH
Q 036072 514 FQTGNYEMGRKVWDEMI 530 (631)
Q Consensus 514 ~~~g~~~~A~~~~~~m~ 530 (631)
...|++++|...|++..
T Consensus 218 ~~~g~~~~A~~~~~~a~ 234 (258)
T 3uq3_A 218 IAVKEYASALETLDAAR 234 (258)
T ss_dssp HHTTCHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHH
Confidence 44444444444444443
|
| >3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=99.53 E-value=3.5e-12 Score=124.39 Aligned_cols=225 Identities=11% Similarity=0.034 Sum_probs=127.4
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--CCC----HHHHH
Q 036072 314 VDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGF--KPD----VVAHN 387 (631)
Q Consensus 314 ~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~--~p~----~~ty~ 387 (631)
...+..+...+...|++++|..+|++..+.. .+..+|..+...+...|++++|...+++..+... .++ ..+|.
T Consensus 5 a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~ 83 (258)
T 3uq3_A 5 ADKEKAEGNKFYKARQFDEAIEHYNKAWELH-KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFA 83 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHHhh-ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHH
Confidence 3455666666677777777777777765544 5666677777777777777777777776665311 111 35566
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC
Q 036072 388 IMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPD 467 (631)
Q Consensus 388 ~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~ 467 (631)
.+...+...|++++|.+.|+.+.+.. |+.. .+...|++++|...++.+..... .+
T Consensus 84 ~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~----------------------~~~~~~~~~~a~~~~~~~~~~~~-~~ 138 (258)
T 3uq3_A 84 RIGNAYHKLGDLKKTIEYYQKSLTEH--RTAD----------------------ILTKLRNAEKELKKAEAEAYVNP-EK 138 (258)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCHH----------------------HHHHHHHHHHHHHHHHHHHHCCH-HH
T ss_pred HHHHHHHHcccHHHHHHHHHHHHhcC--chhH----------------------HHHHHhHHHHHHHHHHHHHHcCc-ch
Confidence 66666666677777766666666532 2211 12223455666666666555321 12
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 036072 468 GLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGG 547 (631)
Q Consensus 468 ~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~ 547 (631)
...+..+...+...|++++|...++++.+.. +.+..++..+..+|...|++++|...+++..+.... +...|..+...
T Consensus 139 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~-~~~~~~~l~~~ 216 (258)
T 3uq3_A 139 AEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPN-FVRAYIRKATA 216 (258)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCHH-HHHHHHHHHHH
Confidence 3445555555556666666666666555532 224455555555555666666666666555554221 34555555555
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 036072 548 LISQDRSGEAYKYLEEMLE 566 (631)
Q Consensus 548 ~~~~g~~~~A~~ll~~m~~ 566 (631)
+...|++++|.+.+++..+
T Consensus 217 ~~~~g~~~~A~~~~~~a~~ 235 (258)
T 3uq3_A 217 QIAVKEYASALETLDAART 235 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 5555555555555555544
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.50 E-value=2.2e-12 Score=123.66 Aligned_cols=200 Identities=7% Similarity=-0.047 Sum_probs=166.4
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 036072 242 AHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLL 321 (631)
Q Consensus 242 ~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll 321 (631)
+++...|..+...+.+.|++++|...|++..+..+.+...+..+..++...|++++|+..|+...+.. +.+...+..+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg 80 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLS 80 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHH
Confidence 35667888999999999999999999999999998899999999999999999999999999999876 56788899999
Q ss_pred HHHHcC-----------CChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036072 322 ENLGRS-----------KLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIML 390 (631)
Q Consensus 322 ~~~~~~-----------g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li 390 (631)
.++... |++++|...|++..+..+.+...|..+...+...|++++|+..|++..+.. .+...+..+.
T Consensus 81 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la 158 (217)
T 2pl2_A 81 EAYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALA 158 (217)
T ss_dssp HHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHH
T ss_pred HHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHH
Confidence 999999 999999999999988767788899999999999999999999999999987 6889999999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHH
Q 036072 391 EGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEME 460 (631)
Q Consensus 391 ~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 460 (631)
.+|...|++++|+..|+...+. .|+ +..++..+...+.+.|++++|...|++..
T Consensus 159 ~~~~~~g~~~~A~~~~~~al~~--~P~--------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 159 ELYLSMGRLDEALAQYAKALEQ--APK--------------DLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHH--STT--------------CHHHHHHHHHHHTC---------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHh--CCC--------------ChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 9999999999999999999885 344 45566777888999999999999888754
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.48 E-value=1.3e-10 Score=114.99 Aligned_cols=225 Identities=8% Similarity=-0.073 Sum_probs=147.9
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCcHHHHH
Q 036072 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLK----IGKRSDAIKLFEVMKAKGPSPNVRSYT 422 (631)
Q Consensus 347 ~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~----~g~~~~A~~ll~~m~~~g~~p~~~~~~ 422 (631)
+..++..+...|...|++++|...|++..+. -+..++..+...|.. .+++++|++.|++..+.+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~--------- 72 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN--------- 72 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---------
Confidence 3445555666666666666666666666652 234555556666666 666666666666665543
Q ss_pred HHHHHHhhcCHHHHHHHHHHHhc----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHH
Q 036072 423 IMIWKFCKQNAAVYTCLITGFGN----RRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKI----QKMPDEAVRIYKEM 494 (631)
Q Consensus 423 ~li~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~l~~~m 494 (631)
+..++..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|+..|++.
T Consensus 73 ---------~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a 140 (273)
T 1ouv_A 73 ---------YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKA 140 (273)
T ss_dssp ---------CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHH
T ss_pred ---------CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHHcCCCcccCHHHHHHHHHHH
Confidence 12233344455555 667777777777666653 55666666677776 77777777777777
Q ss_pred HHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHH
Q 036072 495 VRSGFKPTIHTYNMIMKSYFQ----TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLIS----QDRSGEAYKYLEEMLE 566 (631)
Q Consensus 495 ~~~g~~p~~~t~~~Li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~ll~~m~~ 566 (631)
.+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|.+.+++..+
T Consensus 141 ~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~ 214 (273)
T 1ouv_A 141 CDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACE 214 (273)
T ss_dssp HHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHH
T ss_pred HhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHh
Confidence 7754 45566667777776 777777777777777653 45666677777777 7777777777777777
Q ss_pred CCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCC
Q 036072 567 KGMKAPVLDYNKFAADLSR----AGRSYVLDELAQKMRFSGK 604 (631)
Q Consensus 567 ~g~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~ 604 (631)
.+ +...+..+...|.. .+++++|.+++++..+.|.
T Consensus 215 ~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 215 LE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp TT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred CC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 64 25566677777777 7777778777777776664
|
| >2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus} | Back alignment and structure |
|---|
Probab=99.47 E-value=6.6e-12 Score=120.25 Aligned_cols=159 Identities=13% Similarity=-0.003 Sum_probs=85.0
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc-----------CChhHHHHHHHHHHHCCCCCCHH
Q 036072 436 YTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQ-----------KMPDEAVRIYKEMVRSGFKPTIH 504 (631)
Q Consensus 436 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~-----------g~~~~A~~l~~~m~~~g~~p~~~ 504 (631)
+..+...+.+.|++++|...|++..+... -+...+..+...+... |++++|+..|++..+.. +-+..
T Consensus 42 ~~~lg~~~~~~g~~~~A~~~~~~al~~~P-~~~~a~~~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~ 119 (217)
T 2pl2_A 42 LYWLARTQLKLGLVNPALENGKTLVARTP-RYLGGYMVLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAP 119 (217)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHH
Confidence 33334444444444444444444443321 1334444444444444 66777777777666642 22455
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036072 505 TYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLS 584 (631)
Q Consensus 505 t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~ 584 (631)
.+..+..+|...|++++|...|++..+.. .+...+..+..+|...|++++|...|+++.+.. +.+...+..+..++.
T Consensus 120 ~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~ 196 (217)
T 2pl2_A 120 LHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALL 196 (217)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHH
Confidence 66666667777777777777777776655 466666777777777777777777777776643 334556666777777
Q ss_pred hcCCHHHHHHHHHHH
Q 036072 585 RAGRSYVLDELAQKM 599 (631)
Q Consensus 585 ~~g~~~~A~~l~~~m 599 (631)
+.|++++|.+.+++.
T Consensus 197 ~~g~~~~A~~~~~~~ 211 (217)
T 2pl2_A 197 LKGKAEEAARAAALE 211 (217)
T ss_dssp C--------------
T ss_pred HccCHHHHHHHHHHH
Confidence 777777777666654
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.47 E-value=3.1e-11 Score=117.63 Aligned_cols=199 Identities=8% Similarity=-0.050 Sum_probs=85.5
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 036072 316 TINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLK 395 (631)
Q Consensus 316 ~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~ 395 (631)
.+..+...+...|++++|...|+++.+..+.+..++..+...|...|++++|.+.|+++.+.. ..+...+..+...|..
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~ 117 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFLYE 117 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHH
Confidence 344444444555555555555555444333344445555555555555555555555554432 1234444444455555
Q ss_pred cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036072 396 IGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475 (631)
Q Consensus 396 ~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li 475 (631)
.|++++|.++++++.+.+..|+ +...+..+...|...|++++|...|++..+... .+...+..+.
T Consensus 118 ~g~~~~A~~~~~~~~~~~~~~~--------------~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~la 182 (252)
T 2ho1_A 118 QKRYEEAYQRLLEASQDTLYPE--------------RSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNR-NQPSVALEMA 182 (252)
T ss_dssp TTCHHHHHHHHHHHTTCTTCTT--------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHhCccCcc--------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCc-ccHHHHHHHH
Confidence 5555555555554443212222 111222333334444444444444444433321 1233344444
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 476 KLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIR 531 (631)
Q Consensus 476 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~ 531 (631)
..+...|++++|..+++++.+.. ..+...+..+...|...|++++|.++++++.+
T Consensus 183 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~ 237 (252)
T 2ho1_A 183 DLLYKEREYVPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKR 237 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 44444444444444444443321 12333344444444444444444444444433
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.47 E-value=8.6e-10 Score=127.10 Aligned_cols=258 Identities=14% Similarity=0.116 Sum_probs=161.4
Q ss_pred HHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHH
Q 036072 286 MNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLM 365 (631)
Q Consensus 286 i~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~ 365 (631)
...+...|.+++|..+|++.. ......+.++. ..+++++|.++.++.. +..+|..+..++.+.|+++
T Consensus 1056 A~Iai~lglyEEAf~IYkKa~-----~~~~A~~VLie---~i~nldrAiE~Aervn-----~p~vWsqLAKAql~~G~~k 1122 (1630)
T 1xi4_A 1056 ANIAISNELFEEAFAIFRKFD-----VNTSAVQVLIE---HIGNLDRAYEFAERCN-----EPAVWSQLAKAQLQKGMVK 1122 (1630)
T ss_pred HHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHHHH---HHhhHHHHHHHHHhcC-----CHHHHHHHHHHHHhCCCHH
Confidence 344455566666666666542 11122222222 4556666666666542 4678888899999999999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhc-------------C
Q 036072 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ-------------N 432 (631)
Q Consensus 366 ~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~-------------~ 432 (631)
+|.+.|.+. -|...|.-++.+|.+.|++++|.++|....+..-.|...+ .+..+|++. +
T Consensus 1123 EAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt--~LafaYAKl~rleele~fI~~~n 1194 (1630)
T 1xi4_A 1123 EAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVET--ELIFALAKTNRLAELEEFINGPN 1194 (1630)
T ss_pred HHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccH--HHHHHHHhhcCHHHHHHHHhCCC
Confidence 999888653 3677788889999999999999999887666432222222 233333332 3
Q ss_pred HHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHH
Q 036072 433 AAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKS 512 (631)
Q Consensus 433 ~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~ 512 (631)
...|..+...|...|++++|..+|... ..|..+...|.+.|++++|.+.+++. .+..+|..+..+
T Consensus 1195 ~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~a 1259 (1630)
T 1xi4_A 1195 NAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFA 1259 (1630)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHH
Confidence 344555666666777777777777663 25666777777777777777777655 244666666666
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh
Q 036072 513 YFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR 585 (631)
Q Consensus 513 ~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~ 585 (631)
|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++..+... +-....|.-|...|++
T Consensus 1260 cve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaK 1326 (1630)
T 1xi4_A 1260 CVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSK 1326 (1630)
T ss_pred HhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHh
Confidence 77777766666654432 2255666677777777788888887776666543 2333345555555544
|
| >1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=99.46 E-value=1.3e-10 Score=115.11 Aligned_cols=224 Identities=13% Similarity=0.039 Sum_probs=162.1
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHcCCCCCHHHHHH
Q 036072 313 GVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCR----VKNLMEAGRVWNEMIDKGFKPDVVAHNI 388 (631)
Q Consensus 313 ~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~ty~~ 388 (631)
+..++..+...|...|++++|...|++..+ +.+...+..+...|.. .+++++|...|++..+.+ +...+..
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~--~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~ 79 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACD--LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---YSNGCHL 79 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHH--CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---CHHHHHH
Confidence 445555666666666777777777766554 2345566667777777 777777777777777664 5666777
Q ss_pred HHHHHHH----cCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhc----cCCHHHHHHHHHHHH
Q 036072 389 MLEGLLK----IGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGN----RRRMDIVYDLLKEME 460 (631)
Q Consensus 389 li~~~~~----~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~----~g~~~~A~~l~~~m~ 460 (631)
+...|.. .+++++|++.|+...+.+ +..++..+...|.. .+++++|...|++..
T Consensus 80 lg~~~~~g~~~~~~~~~A~~~~~~a~~~~------------------~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~ 141 (273)
T 1ouv_A 80 LGNLYYSGQGVSQNTNKALQYYSKACDLK------------------YAEGCASLGGIYHDGKVVTRDFKKAVEYFTKAC 141 (273)
T ss_dssp HHHHHHHTSSSCCCHHHHHHHHHHHHHTT------------------CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHH
T ss_pred HHHHHhCCCCcccCHHHHHHHHHHHHHcC------------------CccHHHHHHHHHHcCCCcccCHHHHHHHHHHHH
Confidence 7777777 777777777777776653 22334455566666 778888888888877
Q ss_pred HcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHc
Q 036072 461 ERGCPPDGLTYNALIKLMKI----QKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ----TGNYEMGRKVWDEMIRR 532 (631)
Q Consensus 461 ~~g~~p~~~t~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~----~g~~~~A~~~~~~m~~~ 532 (631)
+.+ +...+..+...|.. .+++++|...|++..+.+ +...+..+..+|.. .+++++|...|++..+.
T Consensus 142 ~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~ 215 (273)
T 1ouv_A 142 DLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACEL 215 (273)
T ss_dssp HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHT
T ss_pred hcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhC
Confidence 764 55666777777777 888888888888888764 45677788888888 88889998888888876
Q ss_pred CCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCC
Q 036072 533 GCCPDDNSYTVLIGGLIS----QDRSGEAYKYLEEMLEKG 568 (631)
Q Consensus 533 g~~p~~~t~~~li~~~~~----~g~~~~A~~ll~~m~~~g 568 (631)
+ +...+..+...|.. .+++++|.+.|++..+.|
T Consensus 216 ~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 216 E---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp T---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred C---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 4 36677777788887 888889999988888765
|
| >2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A | Back alignment and structure |
|---|
Probab=99.46 E-value=3.9e-11 Score=116.87 Aligned_cols=200 Identities=13% Similarity=-0.017 Sum_probs=132.2
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENL 324 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~ 324 (631)
...|..+...+...|++++|...|+++.+..+.+..++..+...+...|++++|.+.|+.+.+.. +.+...+..+...|
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 45667777777888888888888888877766667777777777788888888888887777654 34566677777777
Q ss_pred HcCCChHHHHHHHHHHhc--ccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 036072 325 GRSKLPKEAQLLFDKLKH--RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDA 402 (631)
Q Consensus 325 ~~~g~~~~A~~l~~~m~~--~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A 402 (631)
...|++++|..+|+++.+ ..+.+...+..+...+.+.|++++|...|+++.+.. ..+...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHH
Confidence 777777777777777665 333345566666777777777777777777766642 22455666666666666777777
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 036072 403 IKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEER 462 (631)
Q Consensus 403 ~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 462 (631)
...++.+.+.. |+ +...+..+...+...|++++|.++++.+.+.
T Consensus 195 ~~~~~~~~~~~--~~--------------~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 195 RQYYDLFAQGG--GQ--------------NARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHTTS--CC--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--cC--------------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 66666665532 21 2223334445555556666666666665554
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.46 E-value=2e-11 Score=120.34 Aligned_cols=233 Identities=11% Similarity=0.027 Sum_probs=125.6
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHHHHHHHHH
Q 036072 317 INCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD--VVAHNIMLEGLL 394 (631)
Q Consensus 317 ~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~ty~~li~~~~ 394 (631)
+......+...|++++|..+|++..+..+.+...+..+...|...|++++|...+++..+.+..++ ..+|..+...+.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~ 85 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILM 85 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHH
Confidence 334445555666666666666665554444455666666666666666666666666655321111 233555666666
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 036072 395 KIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474 (631)
Q Consensus 395 ~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 474 (631)
..|++++|++.|+...+.. |+ +..++..+...|...|++++|...|++..+.. +.+...+..+
T Consensus 86 ~~~~~~~A~~~~~~a~~~~--~~--------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l 148 (272)
T 3u4t_A 86 KKGQDSLAIQQYQAAVDRD--TT--------------RLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYEL 148 (272)
T ss_dssp HTTCHHHHHHHHHHHHHHS--TT--------------CTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHH
T ss_pred HcccHHHHHHHHHHHHhcC--cc--------------cHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHH
Confidence 6666666666666665532 21 22344455555666666666666666555441 2234444444
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcC-CCCC------HHHHHHH
Q 036072 475 IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN---YEMGRKVWDEMIRRG-CCPD------DNSYTVL 544 (631)
Q Consensus 475 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~---~~~A~~~~~~m~~~g-~~p~------~~t~~~l 544 (631)
...+...+++++|.+.|+++.+.. +.+...+..+..++...|+ +++|...++++.+.. -.|+ ..+|..+
T Consensus 149 ~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 227 (272)
T 3u4t_A 149 GQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYI 227 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHH
Confidence 423333446666666666666542 2234555555666666665 555666666555421 1112 1345555
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHC
Q 036072 545 IGGLISQDRSGEAYKYLEEMLEK 567 (631)
Q Consensus 545 i~~~~~~g~~~~A~~ll~~m~~~ 567 (631)
...|...|++++|.+.++++.+.
T Consensus 228 ~~~~~~~~~~~~A~~~~~~al~~ 250 (272)
T 3u4t_A 228 AYYYTINRDKVKADAAWKNILAL 250 (272)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhc
Confidence 66666666666666666666654
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.45 E-value=5.3e-11 Score=113.28 Aligned_cols=127 Identities=9% Similarity=-0.050 Sum_probs=60.5
Q ss_pred HHHHHhcc-CCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHc
Q 036072 439 LITGFGNR-RRMDIVYDLLKEMEERGCPPD-GLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQT 516 (631)
Q Consensus 439 li~~~~~~-g~~~~A~~l~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~ 516 (631)
+...|... |++++|...++.+.+.+..|+ ...+..+...+...|++++|...++++.+.. +.+...+..+..+|...
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 160 (225)
T 2vq2_A 82 YGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLA 160 (225)
T ss_dssp HHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHc
Confidence 33444444 444444444444443111121 3344444445555555555555555554432 22344555555555555
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 517 GNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLE 566 (631)
Q Consensus 517 g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~ 566 (631)
|++++|..+++++.+.....+...+..+...+...|+.++|..+++.+.+
T Consensus 161 ~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 210 (225)
T 2vq2_A 161 GQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA 210 (225)
T ss_dssp TCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 55555555555555432212444455555555555555555555555543
|
| >4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.44 E-value=5.3e-11 Score=127.61 Aligned_cols=321 Identities=12% Similarity=-0.014 Sum_probs=199.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC--------CCCCHHHHHHHHHHHHHc--cCHHHHHHHHHHHHhCCCCcC
Q 036072 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEK--------GLLSMETFKIAMNAFAAA--KERKKAVAIFELMNKYKFKAG 313 (631)
Q Consensus 244 ~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~--------g~~~~~~~~~li~~~~~~--g~~~~A~~v~~~m~~~g~~~~ 313 (631)
...+|+.+..+|...|++++|...+++..+. +.....++.....++... +++++|++.|+...+.. +-+
T Consensus 93 ~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~ 171 (472)
T 4g1t_A 93 SLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKN 171 (472)
T ss_dssp THHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTC
T ss_pred HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCC
Confidence 4678999999999999999999999887642 123466777776666665 46899999999999875 445
Q ss_pred HHHHHHHHHH---HHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhc----CCHHHHHHHHHHHHHcCCCCCHHHH
Q 036072 314 VDTINCLLEN---LGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRV----KNLMEAGRVWNEMIDKGFKPDVVAH 386 (631)
Q Consensus 314 ~~~~~~Ll~~---~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~----g~~~~A~~l~~~m~~~g~~p~~~ty 386 (631)
...+..+..+ +...++.++|...+++..+..+.+..++..+...+... +++++|.+.+++..... +.+..++
T Consensus 172 ~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~ 250 (472)
T 4g1t_A 172 PEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLNPDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKA-PGVTDVL 250 (472)
T ss_dssp HHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHCSSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHC-SSCHHHH
T ss_pred HHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhC-ccHHHHH
Confidence 6666555544 44567888899988887765566777777776666554 57889999999988763 3467788
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhc----CHHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 036072 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ----NAAVYTCLITGFGNRRRMDIVYDLLKEMEER 462 (631)
Q Consensus 387 ~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~----~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 462 (631)
..+...|...|++++|.+.+++..+.... +...+..+-..|... ...............+..+.|...++...+.
T Consensus 251 ~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~ 329 (472)
T 4g1t_A 251 RSAAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGCCYRAKVFQVMNLRENGMYGKRKLLELIGHAVAHLKKADEA 329 (472)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHC------CHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhHHHHHHHHHHHhhc
Confidence 89999999999999999999999875322 233333222111110 0000000000011112345666666666554
Q ss_pred CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHH--HHHHHHH-HHHHcCCHHHHHHHHHHHHHcCC-----
Q 036072 463 GCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIH--TYNMIMK-SYFQTGNYEMGRKVWDEMIRRGC----- 534 (631)
Q Consensus 463 g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~--t~~~Li~-~~~~~g~~~~A~~~~~~m~~~g~----- 534 (631)
... +...+..+...|...|++++|+..|++..+....+... .+..+.. .+...|+.++|+..|++..+...
T Consensus 330 ~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i~~~~~~~ 408 (472)
T 4g1t_A 330 NDN-LFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKINQKSREK 408 (472)
T ss_dssp CTT-TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHSCCCCHHH
T ss_pred CCc-hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHH
Confidence 322 34456667777777788888888887777654332211 1222222 22346777777777766654321
Q ss_pred ------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 036072 535 ------------------CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568 (631)
Q Consensus 535 ------------------~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g 568 (631)
+.+..+|..+...|...|++++|++.|++.++.+
T Consensus 409 ~~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 409 EKMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 2256788999999999999999999999998865
|
| >2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis} | Back alignment and structure |
|---|
Probab=99.44 E-value=7.3e-11 Score=112.27 Aligned_cols=165 Identities=13% Similarity=0.032 Sum_probs=91.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENL 324 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~ 324 (631)
...|..+...+...|++++|...|+++.+..+.+..++..+...+...|++++|.+.|+.+.+.. +.+..++..+...|
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~ 86 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGWFL 86 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHHHH
Confidence 44556666666666666666666666666555555566666666666666666666666665543 33455555555555
Q ss_pred HcC-CChHHHHHHHHHHhc--ccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 036072 325 GRS-KLPKEAQLLFDKLKH--RFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSD 401 (631)
Q Consensus 325 ~~~-g~~~~A~~l~~~m~~--~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~ 401 (631)
... |++++|...++.+.+ ..+.+...+..+...+.+.|++++|...|+++.+.. +.+...+..+...+...|++++
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 165 (225)
T 2vq2_A 87 CGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGD 165 (225)
T ss_dssp HTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHH
Confidence 555 666666666655544 222223455555555555555555555555555432 1134445555555555555555
Q ss_pred HHHHHHHHHH
Q 036072 402 AIKLFEVMKA 411 (631)
Q Consensus 402 A~~ll~~m~~ 411 (631)
|.+.++.+.+
T Consensus 166 A~~~~~~~~~ 175 (225)
T 2vq2_A 166 ADYYFKKYQS 175 (225)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555555444
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.43 E-value=3.2e-11 Score=125.66 Aligned_cols=248 Identities=8% Similarity=0.065 Sum_probs=192.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKE-RKKAVAIFELMNKYKFKAGVDTINCLLEN 323 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~-~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~ 323 (631)
...|+.+..++.+.|++++|+..+++..+..+-+..+|+.+..++...|+ +++|+..|+.+++.. +-+...|+.+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~-P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 45677788888899999999999999999998899999999999999997 999999999999976 5688899999999
Q ss_pred HHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH-cCCHHHH
Q 036072 324 LGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLK-IGKRSDA 402 (631)
Q Consensus 324 ~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~-~g~~~~A 402 (631)
+...|++++|+..|+++.+..+.+...|..+..++.+.|++++|+..|+++.+... -+...|+.+..++.. .|..++|
T Consensus 176 ~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~P-~~~~a~~~lg~~l~~l~~~~~eA 254 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDRA 254 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHhcCcchHH
Confidence 99999999999999999887777899999999999999999999999999998743 367889999999998 6665777
Q ss_pred -----HHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccC--CHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036072 403 -----IKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRR--RMDIVYDLLKEMEERGCPPDGLTYNALI 475 (631)
Q Consensus 403 -----~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g--~~~~A~~l~~~m~~~g~~p~~~t~~~li 475 (631)
++.++...+. .|+ +..+|+.+...+...| ++++|.+.+.++ +. .+.+...+..+.
T Consensus 255 ~~~~el~~~~~Al~l--~P~--------------~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La 316 (382)
T 2h6f_A 255 VLEREVQYTLEMIKL--VPH--------------NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLV 316 (382)
T ss_dssp HHHHHHHHHHHHHHH--STT--------------CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH--CCC--------------CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHH
Confidence 4677776663 343 4455666666666666 567777777776 22 233556666777
Q ss_pred HHHHhcC---------ChhHHHHHHHHH-HHCCCCCCHHHHHHHHHHH
Q 036072 476 KLMKIQK---------MPDEAVRIYKEM-VRSGFKPTIHTYNMIMKSY 513 (631)
Q Consensus 476 ~~~~~~g---------~~~~A~~l~~~m-~~~g~~p~~~t~~~Li~~~ 513 (631)
..|.+.| ..++|+++|+++ .+.. +.....|..+...+
T Consensus 317 ~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~D-P~r~~~w~~~~~~l 363 (382)
T 2h6f_A 317 DIYEDMLENQCDNKEDILNKALELCEILAKEKD-TIRKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTC-GGGHHHHHHHHHHH
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHHHHHhC-chhHHHHHHHHHHH
Confidence 7776653 246777777776 4432 22334444444433
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=1e-11 Score=120.08 Aligned_cols=166 Identities=14% Similarity=0.063 Sum_probs=93.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 036072 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLEN 323 (631)
Q Consensus 244 ~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~ 323 (631)
+...|..+...+...|++++|..+|+++.+..+.+..++..+...+...|++++|++.|+.+.+.. +.+..++..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 355666666677777777777777777777666666677777777777777777777777776653 3455666666666
Q ss_pred HHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 036072 324 LGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAI 403 (631)
Q Consensus 324 ~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~ 403 (631)
|...|++++|...++++.+..+.+...+..+...+.+.|++++|...++++.+.. ..+...+..+...+.+.|++++|.
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRAGMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHH
Confidence 6666777777776666655545555666666666666666666666666666542 224555555556666666666666
Q ss_pred HHHHHHHH
Q 036072 404 KLFEVMKA 411 (631)
Q Consensus 404 ~ll~~m~~ 411 (631)
+.++.+.+
T Consensus 180 ~~~~~~~~ 187 (243)
T 2q7f_A 180 SQFAAVTE 187 (243)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 66655544
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.43 E-value=4.1e-12 Score=125.38 Aligned_cols=151 Identities=11% Similarity=-0.088 Sum_probs=82.2
Q ss_pred cCChhHHHHHHHHHHHCCCC----CHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHH
Q 036072 258 ARQFETMVSMLEEMGEKGLL----SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEA 333 (631)
Q Consensus 258 ~g~~~~A~~l~~~m~~~g~~----~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A 333 (631)
.|++++|+..|+++.+.... +..++..+...+...|++++|++.|+.+.+.. +.+..++..+...|...|++++|
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHH
Confidence 35566666666666655321 23355566666666666666666666665543 33455556666666666666666
Q ss_pred HHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 334 QLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKA 411 (631)
Q Consensus 334 ~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~ 411 (631)
...|++..+..+.+..++..+...|.+.|++++|...|+++.+. .|+...+...+..+...|++++|...+.....
T Consensus 97 ~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 97 YEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 66666655544444555555666666666666666666655553 23322333333333444555555555544433
|
| >3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii} | Back alignment and structure |
|---|
Probab=99.42 E-value=3e-11 Score=119.10 Aligned_cols=245 Identities=9% Similarity=0.014 Sum_probs=122.3
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCC
Q 036072 250 SMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKL 329 (631)
Q Consensus 250 ~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~ 329 (631)
.....+...|++++|+..|++..+..+.+..++..+..++...|++++|++.|+...+.+ .+...
T Consensus 8 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~------------- 72 (272)
T 3u4t_A 8 RYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKV--NATKA------------- 72 (272)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTS--CTTTC-------------
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcc--CchhH-------------
Confidence 344445555555555555555555444444444444445555555555555555554421 11111
Q ss_pred hHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 036072 330 PKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVM 409 (631)
Q Consensus 330 ~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m 409 (631)
....|..+...+...|++++|...|++..+.. +.+..+|..+...|...|++++|++.+++.
T Consensus 73 -----------------~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 134 (272)
T 3u4t_A 73 -----------------KSADFEYYGKILMKKGQDSLAIQQYQAAVDRD-TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQ 134 (272)
T ss_dssp -----------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHGGG
T ss_pred -----------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHccCHHHHHHHHHHH
Confidence 01124444555555555555555555544432 113344555555555555555555555554
Q ss_pred HHcCCCCcHHHHHHHHHHHhhcCHHHHHHHH-HHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC---hh
Q 036072 410 KAKGPSPNVRSYTIMIWKFCKQNAAVYTCLI-TGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKM---PD 485 (631)
Q Consensus 410 ~~~g~~p~~~~~~~li~~~~~~~~~~~~~li-~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~---~~ 485 (631)
.+. .|+ +..+|..+. ..|. .+++++|.+.|++..+... .+...+..+...+...++ .+
T Consensus 135 l~~--~~~--------------~~~~~~~l~~~~~~-~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~ 196 (272)
T 3u4t_A 135 IRP--TTT--------------DPKVFYELGQAYYY-NKEYVKADSSFVKVLELKP-NIYIGYLWRARANAAQDPDTKQG 196 (272)
T ss_dssp CCS--SCC--------------CHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHSTTCSSC
T ss_pred hhc--CCC--------------cHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHhCc-cchHHHHHHHHHHHHcCcchhhH
Confidence 443 222 122222333 2222 2356666666666555422 234555555666666666 66
Q ss_pred HHHHHHHHHHHCC-CCCC------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036072 486 EAVRIYKEMVRSG-FKPT------IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIG 546 (631)
Q Consensus 486 ~A~~l~~~m~~~g-~~p~------~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 546 (631)
+|...++++.+.. -.|+ ..+|..+...|...|++++|...|+++.+.... |...+..+..
T Consensus 197 ~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~l~~ 263 (272)
T 3u4t_A 197 LAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPT-NKKAIDGLKM 263 (272)
T ss_dssp TTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHC-
T ss_pred HHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc-HHHHHHHhhh
Confidence 6777776666421 1122 246667777777788888888888877765422 4444444433
|
| >1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A | Back alignment and structure |
|---|
Probab=99.42 E-value=2.1e-09 Score=123.89 Aligned_cols=288 Identities=10% Similarity=-0.000 Sum_probs=177.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCCh
Q 036072 251 MMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLP 330 (631)
Q Consensus 251 li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~ 330 (631)
+...+...|.+++|..+|++.. ......+.++. ..+++++|.++.++. -+..+|..+..++...|++
T Consensus 1055 IA~Iai~lglyEEAf~IYkKa~----~~~~A~~VLie---~i~nldrAiE~Aerv------n~p~vWsqLAKAql~~G~~ 1121 (1630)
T 1xi4_A 1055 IANIAISNELFEEAFAIFRKFD----VNTSAVQVLIE---HIGNLDRAYEFAERC------NEPAVWSQLAKAQLQKGMV 1121 (1630)
T ss_pred HHHHHHhCCCHHHHHHHHHHcC----CHHHHHHHHHH---HHhhHHHHHHHHHhc------CCHHHHHHHHHHHHhCCCH
Confidence 5555555666666666666542 11111122211 344445554444433 1234444455555555555
Q ss_pred HHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC--------------------------CCCHH
Q 036072 331 KEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGF--------------------------KPDVV 384 (631)
Q Consensus 331 ~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~--------------------------~p~~~ 384 (631)
++|...|.+. .|...|..++.+|.+.|++++|.+.|....+..- .++..
T Consensus 1122 kEAIdsYiKA-----dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt~LafaYAKl~rleele~fI~~~n~a 1196 (1630)
T 1xi4_A 1122 KEAIDSYIKA-----DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVETELIFALAKTNRLAELEEFINGPNNA 1196 (1630)
T ss_pred HHHHHHHHhc-----CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccHHHHHHHHhhcCHHHHHHHHhCCCHH
Confidence 5555554332 1344444455555555555555555544443321 12333
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC
Q 036072 385 AHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464 (631)
Q Consensus 385 ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 464 (631)
.|..+...|...|++++|..+|.. ...|..+...|.+.|++++|.+.+++.
T Consensus 1197 d~~~iGd~le~eg~YeeA~~~Y~k------------------------A~ny~rLA~tLvkLge~q~AIEaarKA----- 1247 (1630)
T 1xi4_A 1197 HIQQVGDRCYDEKMYDAAKLLYNN------------------------VSNFGRLASTLVHLGEYQAAVDGARKA----- 1247 (1630)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHh------------------------hhHHHHHHHHHHHhCCHHHHHHHHHHh-----
Confidence 344444444444444444444443 346788899999999999999999876
Q ss_pred CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 036072 465 PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544 (631)
Q Consensus 465 ~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 544 (631)
-+..+|..+-.+|...|++..|......+ ..+...+..++..|.+.|.+++|+.+++..+... .-....|+-|
T Consensus 1248 -~n~~aWkev~~acve~~Ef~LA~~cgl~I-----iv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftEL 1320 (1630)
T 1xi4_A 1248 -NSTRTWKEVCFACVDGKEFRLAQMCGLHI-----VVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTEL 1320 (1630)
T ss_pred -CCHHHHHHHHHHHhhhhHHHHHHHHHHhh-----hcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHH
Confidence 36789999999999999999998876643 4466778899999999999999999998887654 3355677777
Q ss_pred HHHHHHc--CCHHHHHHHHHHHHHCCCCC------CHHHHHHHHHHHHhcCCHHHHHH
Q 036072 545 IGGLISQ--DRSGEAYKYLEEMLEKGMKA------PVLDYNKFAADLSRAGRSYVLDE 594 (631)
Q Consensus 545 i~~~~~~--g~~~~A~~ll~~m~~~g~~p------~~~~~~~li~~~~~~g~~~~A~~ 594 (631)
...|.+. ++..++.++|..-.. +++ +...|..++..|.+.|+++.|..
T Consensus 1321 aiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1321 AILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 7777753 445556665553322 222 35569999999999999999884
|
| >2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=99.42 E-value=2e-11 Score=118.03 Aligned_cols=94 Identities=12% Similarity=-0.018 Sum_probs=34.8
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 036072 317 INCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKI 396 (631)
Q Consensus 317 ~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~ 396 (631)
|..+...+...|++++|..+|+++.+..+.+..++..+...+.+.|++++|...|+++.+.. ..+...+..+...+...
T Consensus 26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~ 104 (243)
T 2q7f_A 26 GGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNVYVVK 104 (243)
T ss_dssp ----------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHHHHHh
Confidence 33344444444444444444444444333344444444444444444444444444444431 11334444444444444
Q ss_pred CCHHHHHHHHHHHHH
Q 036072 397 GKRSDAIKLFEVMKA 411 (631)
Q Consensus 397 g~~~~A~~ll~~m~~ 411 (631)
|++++|.+.++.+.+
T Consensus 105 ~~~~~A~~~~~~~~~ 119 (243)
T 2q7f_A 105 EMYKEAKDMFEKALR 119 (243)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 444444444444433
|
| >1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=99.41 E-value=5.5e-12 Score=124.48 Aligned_cols=247 Identities=11% Similarity=0.015 Sum_probs=170.0
Q ss_pred HccCHHHHHHHHHHHHhCCC---CcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHH
Q 036072 291 AAKERKKAVAIFELMNKYKF---KAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEA 367 (631)
Q Consensus 291 ~~g~~~~A~~v~~~m~~~g~---~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A 367 (631)
..|++++|++.|+.+.+... +.+..++..+...|...|++++|...|+++.+..+.+..+|..+...|...|++++|
T Consensus 17 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A 96 (275)
T 1xnf_A 17 PTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAA 96 (275)
T ss_dssp CCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHH
T ss_pred ccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHH
Confidence 45788999999999988632 224677888899999999999999999998877677888999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccC
Q 036072 368 GRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRR 447 (631)
Q Consensus 368 ~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g 447 (631)
...|++..+.. +.+..++..+...|...|++++|.+.++.+.+.. |+...... ++..+...|
T Consensus 97 ~~~~~~al~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~--~~~~~~~~---------------~~~~~~~~~ 158 (275)
T 1xnf_A 97 YEAFDSVLELD-PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD--PNDPFRSL---------------WLYLAEQKL 158 (275)
T ss_dssp HHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHH---------------HHHHHHHHH
T ss_pred HHHHHHHHhcC-ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCChHHHH---------------HHHHHHHhc
Confidence 99999998863 2357788889999999999999999999988753 33221111 122224457
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---CHHHHHHHHHHHHHcCCHHHHHH
Q 036072 448 RMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKP---TIHTYNMIMKSYFQTGNYEMGRK 524 (631)
Q Consensus 448 ~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~Li~~~~~~g~~~~A~~ 524 (631)
++++|...+....... +++...+. ++..+...++.++|...+.++.+..... +..++..+..+|...|++++|..
T Consensus 159 ~~~~A~~~~~~~~~~~-~~~~~~~~-~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~ 236 (275)
T 1xnf_A 159 DEKQAKEVLKQHFEKS-DKEQWGWN-IVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATA 236 (275)
T ss_dssp CHHHHHHHHHHHHHHS-CCCSTHHH-HHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CHHHHHHHHHHHHhcC-CcchHHHH-HHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHH
Confidence 8888888887766553 22333333 5556667777777777777765432110 13566666777777777777777
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 036072 525 VWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYL 561 (631)
Q Consensus 525 ~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll 561 (631)
.|+++.+.. |+. +.....++...|++++|++.+
T Consensus 237 ~~~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 237 LFKLAVANN--VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred HHHHHHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 777776542 211 222234455556666665554
|
| >2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ... | Back alignment and structure |
|---|
Probab=99.39 E-value=9.1e-11 Score=122.23 Aligned_cols=249 Identities=6% Similarity=-0.013 Sum_probs=191.8
Q ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCC-hHHHHHHHHHHhcccCCChhhHHHHHHH
Q 036072 279 METFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKL-PKEAQLLFDKLKHRFTPNLTTYTVLLGG 357 (631)
Q Consensus 279 ~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~-~~~A~~l~~~m~~~~~p~~~~y~~Li~~ 357 (631)
..+|..+...+...|++++|++.|+.+++.. +-+..+|+.+..++...|+ +++|+..|++..+..+.+..+|+.+..+
T Consensus 97 ~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~ 175 (382)
T 2h6f_A 97 RDVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVL 175 (382)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 4467778888889999999999999999875 5678889999999999996 9999999999988777788999999999
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHH
Q 036072 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYT 437 (631)
Q Consensus 358 ~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~ 437 (631)
+.+.|++++|+..|+++.+.. .-+...|..+..++.+.|++++|+..++.+.+. .|+ +..+|+
T Consensus 176 ~~~~g~~~eAl~~~~kal~ld-P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l--~P~--------------~~~a~~ 238 (382)
T 2h6f_A 176 VEWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKE--DVR--------------NNSVWN 238 (382)
T ss_dssp HHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHH--CTT--------------CHHHHH
T ss_pred HHHccCHHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHh--CCC--------------CHHHHH
Confidence 999999999999999999863 237788999999999999999999999999885 343 455666
Q ss_pred HHHHHHhc-cCCHHHH-----HHHHHHHHHcCCCCCHHHHHHHHHHHHhcC--ChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 036072 438 CLITGFGN-RRRMDIV-----YDLLKEMEERGCPPDGLTYNALIKLMKIQK--MPDEAVRIYKEMVRSGFKPTIHTYNMI 509 (631)
Q Consensus 438 ~li~~~~~-~g~~~~A-----~~l~~~m~~~g~~p~~~t~~~li~~~~~~g--~~~~A~~l~~~m~~~g~~p~~~t~~~L 509 (631)
.+...+.+ .|..++| +..|++..+.... +...|+.+...+...| ++++|++.+.++ +. ...+...+..+
T Consensus 239 ~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~-~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~L 315 (382)
T 2h6f_A 239 QRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPH-NESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFL 315 (382)
T ss_dssp HHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHH
T ss_pred HHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHH
Confidence 77777777 5554666 4777777665332 5677777777777777 578888888777 32 24456777888
Q ss_pred HHHHHHcC---------CHHHHHHHHHHH-HHcCCCCCHHHHHHHHHHHH
Q 036072 510 MKSYFQTG---------NYEMGRKVWDEM-IRRGCCPDDNSYTVLIGGLI 549 (631)
Q Consensus 510 i~~~~~~g---------~~~~A~~~~~~m-~~~g~~p~~~t~~~li~~~~ 549 (631)
..+|.+.| ..++|.++|+++ .+... .....|..+...+.
T Consensus 316 a~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP-~r~~~w~~~~~~l~ 364 (382)
T 2h6f_A 316 VDIYEDMLENQCDNKEDILNKALELCEILAKEKDT-IRKEYWRYIGRSLQ 364 (382)
T ss_dssp HHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCG-GGHHHHHHHHHHHH
T ss_pred HHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCc-hhHHHHHHHHHHHH
Confidence 88887764 257888888887 55421 13455555555444
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.39 E-value=1.8e-11 Score=127.86 Aligned_cols=278 Identities=12% Similarity=0.007 Sum_probs=186.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHhC----CCC-cC
Q 036072 243 HNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSM----ETFKIAMNAFAAAKERKKAVAIFELMNKY----KFK-AG 313 (631)
Q Consensus 243 p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~----~~~~~li~~~~~~g~~~~A~~v~~~m~~~----g~~-~~ 313 (631)
.....+......+...|++++|...|+++.+.++.+. .++..+...+...|++++|...++...+. +-. ..
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 86 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGE 86 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHH
Confidence 3466777788889999999999999999988776553 57888889999999999999999887543 211 22
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHhcccC--CC----hhhHHHHHHHHHhcCC--------------------HHHH
Q 036072 314 VDTINCLLENLGRSKLPKEAQLLFDKLKHRFT--PN----LTTYTVLLGGWCRVKN--------------------LMEA 367 (631)
Q Consensus 314 ~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~--p~----~~~y~~Li~~~~~~g~--------------------~~~A 367 (631)
..++..+...|...|++++|...+++..+..+ .+ ..++..+...|...|+ +++|
T Consensus 87 ~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A 166 (406)
T 3sf4_A 87 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAA 166 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHH
Confidence 55677788889999999999999988754211 12 4478888889999999 9999
Q ss_pred HHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCcHHHHHHHHHHHhhcCHHHHHHHHH
Q 036072 368 GRVWNEMIDK----GFKP-DVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP-SPNVRSYTIMIWKFCKQNAAVYTCLIT 441 (631)
Q Consensus 368 ~~l~~~m~~~----g~~p-~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~-~p~~~~~~~li~~~~~~~~~~~~~li~ 441 (631)
...+++..+. +..+ ...++..+...|...|++++|.+.+++..+... .++... ...++..+..
T Consensus 167 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----------~~~~~~~la~ 235 (406)
T 3sf4_A 167 VDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA-----------ERRAYSNLGN 235 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHH-----------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHH-----------HHHHHHHHHH
Confidence 9888876542 1111 134677788888889999999999888765311 111111 1234566677
Q ss_pred HHhccCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHH
Q 036072 442 GFGNRRRMDIVYDLLKEMEERGCP-PD----GLTYNALIKLMKIQKMPDEAVRIYKEMVRS----GFKP-TIHTYNMIMK 511 (631)
Q Consensus 442 ~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~Li~ 511 (631)
.|...|++++|...+++..+.... .+ ..++..+...|...|++++|...+++..+. +..+ ...++..+..
T Consensus 236 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~ 315 (406)
T 3sf4_A 236 AYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGN 315 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHH
Confidence 777778888887777766532100 11 335555666666666666666666665532 1000 1334555556
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 036072 512 SYFQTGNYEMGRKVWDEMIR 531 (631)
Q Consensus 512 ~~~~~g~~~~A~~~~~~m~~ 531 (631)
+|...|++++|...+++..+
T Consensus 316 ~~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 316 AYTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666655443
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.39 E-value=2.2e-11 Score=127.96 Aligned_cols=276 Identities=11% Similarity=-0.024 Sum_probs=182.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCH----HHHHHHHHHHHHccCHHHHHHHHHHHHhC----C-CCcCHH
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSM----ETFKIAMNAFAAAKERKKAVAIFELMNKY----K-FKAGVD 315 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~----~~~~~li~~~~~~g~~~~A~~v~~~m~~~----g-~~~~~~ 315 (631)
...+..+...+...|++++|...|+++.+.+..+. .++..+...|...|++++|++.|+...+. + ......
T Consensus 48 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 48 CLELALEGERLCNAGDCRAGVAFFQAAIQAGTEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHHhcccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 34455667778899999999999999998876554 47888899999999999999999888764 1 123456
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHhcc------cCCChhhHHHHHHHHHhcCC-----------------HHHHHHHHH
Q 036072 316 TINCLLENLGRSKLPKEAQLLFDKLKHR------FTPNLTTYTVLLGGWCRVKN-----------------LMEAGRVWN 372 (631)
Q Consensus 316 ~~~~Ll~~~~~~g~~~~A~~l~~~m~~~------~~p~~~~y~~Li~~~~~~g~-----------------~~~A~~l~~ 372 (631)
++..+...|...|++++|...+++..+. .+....++..+...|...|+ +++|.+.++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 7788888999999999999999986542 12234578888999999999 999999888
Q ss_pred HHHHc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CcHHHHHHHHHHHhhcCHHHHHHHHHHHhcc
Q 036072 373 EMIDK----GFKP-DVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS-PNVRSYTIMIWKFCKQNAAVYTCLITGFGNR 446 (631)
Q Consensus 373 ~m~~~----g~~p-~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~-p~~~~~~~li~~~~~~~~~~~~~li~~~~~~ 446 (631)
+..+. +..+ ...++..+...|...|++++|++.+++..+.... .+... ...++..+...|...
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----------~~~~~~~la~~~~~~ 276 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAA-----------ERRANSNLGNSHIFL 276 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH-----------HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHH-----------HHHHHHHHHHHHHHC
Confidence 76542 1111 2346777888889999999999999887653110 01100 123455667777777
Q ss_pred CCHHHHHHHHHHHHHcCCC-C----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CC-CCCHHHHHHHHHHHHHc
Q 036072 447 RRMDIVYDLLKEMEERGCP-P----DGLTYNALIKLMKIQKMPDEAVRIYKEMVRS----GF-KPTIHTYNMIMKSYFQT 516 (631)
Q Consensus 447 g~~~~A~~l~~~m~~~g~~-p----~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~----g~-~p~~~t~~~Li~~~~~~ 516 (631)
|++++|...+++..+.... . ...++..+...|...|++++|...+++..+. +. .....++..+..+|...
T Consensus 277 g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~ 356 (411)
T 4a1s_A 277 GQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAI 356 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHT
T ss_pred cCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHh
Confidence 7777777777766542100 0 1234555555566666666666666555432 00 00122444455555555
Q ss_pred CCHHHHHHHHHHHHH
Q 036072 517 GNYEMGRKVWDEMIR 531 (631)
Q Consensus 517 g~~~~A~~~~~~m~~ 531 (631)
|++++|...|++..+
T Consensus 357 g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 357 GGHERALKYAEQHLQ 371 (411)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHH
Confidence 555555555555443
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.38 E-value=2.3e-11 Score=123.10 Aligned_cols=204 Identities=13% Similarity=0.001 Sum_probs=137.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHhC----CC-CcCHHH
Q 036072 246 RTYNSMMSILGRARQFETMVSMLEEMGEKGLLS----METFKIAMNAFAAAKERKKAVAIFELMNKY----KF-KAGVDT 316 (631)
Q Consensus 246 ~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~----~~~~~~li~~~~~~g~~~~A~~v~~~m~~~----g~-~~~~~~ 316 (631)
..+......+...|++++|...|+++.+..+.+ ..++..+...+...|++++|++.++...+. +. .....+
T Consensus 6 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 6 LELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 344555667788899999999999988876655 357788888999999999999998887553 11 123556
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHhccc--CCC----hhhHHHHHHHHHhcCC--------------------HHHHHHH
Q 036072 317 INCLLENLGRSKLPKEAQLLFDKLKHRF--TPN----LTTYTVLLGGWCRVKN--------------------LMEAGRV 370 (631)
Q Consensus 317 ~~~Ll~~~~~~g~~~~A~~l~~~m~~~~--~p~----~~~y~~Li~~~~~~g~--------------------~~~A~~l 370 (631)
+..+...|...|++++|...+++..+.. .++ ..++..+...|...|+ +++|...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 7778888888999999999888865421 112 3377788888888888 8888888
Q ss_pred HHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CcHHHHHHHHHHHhhcCHHHHHHHHHHHh
Q 036072 371 WNEMIDK----GFKP-DVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS-PNVRSYTIMIWKFCKQNAAVYTCLITGFG 444 (631)
Q Consensus 371 ~~~m~~~----g~~p-~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~-p~~~~~~~li~~~~~~~~~~~~~li~~~~ 444 (631)
+++..+. +..+ ...++..+...+...|++++|.+.+++..+.... ++... ...++..+...|.
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~-----------~~~~~~~l~~~~~ 234 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAA-----------ERRAYSNLGNAYI 234 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHH-----------HHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHH-----------HHHHHHHHHHHHH
Confidence 8776532 1111 1345667777788888888888888776542100 01000 1123445555666
Q ss_pred ccCCHHHHHHHHHHHH
Q 036072 445 NRRRMDIVYDLLKEME 460 (631)
Q Consensus 445 ~~g~~~~A~~l~~~m~ 460 (631)
..|++++|...+++..
T Consensus 235 ~~g~~~~A~~~~~~al 250 (338)
T 3ro2_A 235 FLGEFETASEYYKKTL 250 (338)
T ss_dssp HHTCHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHH
Confidence 6666666666666544
|
| >4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster} | Back alignment and structure |
|---|
Probab=99.37 E-value=4e-11 Score=126.00 Aligned_cols=274 Identities=11% Similarity=-0.009 Sum_probs=167.7
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCH----HHHHHHHHHHHcCCChHHHHHHHHHHhcc------cCCChhh
Q 036072 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGV----DTINCLLENLGRSKLPKEAQLLFDKLKHR------FTPNLTT 350 (631)
Q Consensus 281 ~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~----~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~------~~p~~~~ 350 (631)
.+..+...+...|++++|+..|+.+.+.. +.+. ..+..+...|...|++++|...+++..+. .+....+
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 128 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAKS 128 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHHH
Confidence 45566778899999999999999999874 2333 47888889999999999999999987542 2234567
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHHcCC-----------------HHHHHHHHHH
Q 036072 351 YTVLLGGWCRVKNLMEAGRVWNEMIDK----GF-KPDVVAHNIMLEGLLKIGK-----------------RSDAIKLFEV 408 (631)
Q Consensus 351 y~~Li~~~~~~g~~~~A~~l~~~m~~~----g~-~p~~~ty~~li~~~~~~g~-----------------~~~A~~ll~~ 408 (631)
+..+...|...|++++|...|++..+. +- .....++..+...|...|+ +++|++.+++
T Consensus 129 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~ 208 (411)
T 4a1s_A 129 SGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQE 208 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHHH
Confidence 889999999999999999999987754 11 1124577888889999999 8888887776
Q ss_pred HHHcCCC-CcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcC
Q 036072 409 MKAKGPS-PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP-PD----GLTYNALIKLMKIQK 482 (631)
Q Consensus 409 m~~~g~~-p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~~li~~~~~~g 482 (631)
..+.... .+... ...++..+...|...|++++|...+++..+.... .+ ...+..+...|...|
T Consensus 209 al~~~~~~~~~~~-----------~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 277 (411)
T 4a1s_A 209 NLKLMRDLGDRGA-----------QGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLG 277 (411)
T ss_dssp HHHHHHHHTCHHH-----------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHcCCHHH-----------HHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCc
Confidence 5432000 00000 1234555666677777777777777665432100 01 124555555566666
Q ss_pred ChhHHHHHHHHHHHCCC----C-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHHHcC
Q 036072 483 MPDEAVRIYKEMVRSGF----K-PTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR----GC-CPDDNSYTVLIGGLISQD 552 (631)
Q Consensus 483 ~~~~A~~l~~~m~~~g~----~-p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~t~~~li~~~~~~g 552 (631)
++++|...+++..+... . ....++..+..+|...|++++|...+++..+. +. .....++..+...|...|
T Consensus 278 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 357 (411)
T 4a1s_A 278 QFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIG 357 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhc
Confidence 66666666655543210 0 01334455555555555555555555554432 00 001223444444444445
Q ss_pred CHHHHHHHHHHHHH
Q 036072 553 RSGEAYKYLEEMLE 566 (631)
Q Consensus 553 ~~~~A~~ll~~m~~ 566 (631)
++++|.+++++..+
T Consensus 358 ~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 358 GHERALKYAEQHLQ 371 (411)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHH
Confidence 55555544444443
|
| >3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.35 E-value=2.4e-11 Score=122.90 Aligned_cols=274 Identities=12% Similarity=-0.027 Sum_probs=171.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcC----HHHHHHHHHHHHcCCChHHHHHHHHHHhcc------cCCChhh
Q 036072 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAG----VDTINCLLENLGRSKLPKEAQLLFDKLKHR------FTPNLTT 350 (631)
Q Consensus 281 ~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~----~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~------~~p~~~~ 350 (631)
.+......+...|++++|+..|+.+.+.. +.+ ...+..+...|...|++++|...+++..+. .+....+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 45556778889999999999999999874 233 467888899999999999999999986432 1123557
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCC--------------------HHHHHHH
Q 036072 351 YTVLLGGWCRVKNLMEAGRVWNEMIDKGF-KPD----VVAHNIMLEGLLKIGK--------------------RSDAIKL 405 (631)
Q Consensus 351 y~~Li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~ty~~li~~~~~~g~--------------------~~~A~~l 405 (631)
+..+...|...|++++|...+++..+... ..+ ..++..+...+...|+ +++|.+.
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 88899999999999999999998765311 112 3477888889999999 8888888
Q ss_pred HHHHHHcCCC-CcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHH
Q 036072 406 FEVMKAKGPS-PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC-PPD----GLTYNALIKLMK 479 (631)
Q Consensus 406 l~~m~~~g~~-p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~li~~~~ 479 (631)
+++..+.... .+... ...++..+...|...|++++|...+++..+... .++ ..++..+...+.
T Consensus 166 ~~~a~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~ 234 (338)
T 3ro2_A 166 YEENLSLVTALGDRAA-----------QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYI 234 (338)
T ss_dssp HHHHHHHHHHHTCHHH-----------HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHH-----------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHH
Confidence 8776542000 01100 123455666777777888888877776653210 011 124555555666
Q ss_pred hcCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHH
Q 036072 480 IQKMPDEAVRIYKEMVRS----GFKP-TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR----GC-CPDDNSYTVLIGGLI 549 (631)
Q Consensus 480 ~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~----g~-~p~~~t~~~li~~~~ 549 (631)
..|++++|...+++..+. +..+ ...++..+...|...|++++|...+++..+. +. .....++..+...|.
T Consensus 235 ~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~ 314 (338)
T 3ro2_A 235 FLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYT 314 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHH
Confidence 666666666666655432 1000 0334455555555666666666655555432 00 001223444445555
Q ss_pred HcCCHHHHHHHHHHHHH
Q 036072 550 SQDRSGEAYKYLEEMLE 566 (631)
Q Consensus 550 ~~g~~~~A~~ll~~m~~ 566 (631)
..|++++|...++++.+
T Consensus 315 ~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 315 ALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHTCHHHHHHHHHHHHH
T ss_pred HcCChHHHHHHHHHHHH
Confidence 55555555555555443
|
| >3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.34 E-value=7.4e-11 Score=123.24 Aligned_cols=278 Identities=13% Similarity=0.050 Sum_probs=188.4
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CH
Q 036072 313 GVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPN----LTTYTVLLGGWCRVKNLMEAGRVWNEMIDK----GFKP-DV 383 (631)
Q Consensus 313 ~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~----~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~ 383 (631)
....+..+...+...|++++|...|++..+..+.+ ..+|..+...|...|++++|...+++.... +-.| ..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 87 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEA 87 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHHHH
Confidence 34444455555666666666666666655432223 245666666677777777777776665432 1111 13
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCC--------------
Q 036072 384 VAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS-PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRR-------------- 448 (631)
Q Consensus 384 ~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~-p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~-------------- 448 (631)
.++..+...|...|++++|...+++..+.... .+... ...++..+...|...|+
T Consensus 88 ~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~ 156 (406)
T 3sf4_A 88 KASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVG-----------EARALYNLGNVYHAKGKSFGCPGPQDVGEFP 156 (406)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHH-----------HHHHHHHHHHHHHHHHHTCC-------CCCC
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccc-----------hHHHHHHHHHHHHHcCCcccccccchhhhhh
Confidence 45666777778888888888888776543100 11110 13356667788888888
Q ss_pred ------HHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCC----HHHHHHHHHH
Q 036072 449 ------MDIVYDLLKEMEER----GCPP-DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGF-KPT----IHTYNMIMKS 512 (631)
Q Consensus 449 ------~~~A~~l~~~m~~~----g~~p-~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~t~~~Li~~ 512 (631)
+++|.+.+.+..+. +..+ ...++..+...|...|++++|...+++..+... .++ ..++..+..+
T Consensus 157 ~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 236 (406)
T 3sf4_A 157 EEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNA 236 (406)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 99999998876532 1111 234678888899999999999999998875310 112 3478889999
Q ss_pred HHHcCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCC-CCC----HHHHHHHHHH
Q 036072 513 YFQTGNYEMGRKVWDEMIRRGCC-PD----DNSYTVLIGGLISQDRSGEAYKYLEEMLEKGM-KAP----VLDYNKFAAD 582 (631)
Q Consensus 513 ~~~~g~~~~A~~~~~~m~~~g~~-p~----~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~-~p~----~~~~~~li~~ 582 (631)
|...|++++|...+++..+.... .+ ..++..+...|...|++++|...+++..+... ..+ ...+..+..+
T Consensus 237 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~ 316 (406)
T 3sf4_A 237 YIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNA 316 (406)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHH
Confidence 99999999999999988753111 12 56788889999999999999999999875311 112 4568889999
Q ss_pred HHhcCCHHHHHHHHHHHHh
Q 036072 583 LSRAGRSYVLDELAQKMRF 601 (631)
Q Consensus 583 ~~~~g~~~~A~~l~~~m~~ 601 (631)
|...|++++|.+.+++...
T Consensus 317 ~~~~g~~~~A~~~~~~al~ 335 (406)
T 3sf4_A 317 YTALGNHDQAMHFAEKHLE 335 (406)
T ss_dssp HHHHTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 9999999999999987543
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.30 E-value=2.1e-09 Score=108.59 Aligned_cols=183 Identities=8% Similarity=0.058 Sum_probs=98.1
Q ss_pred HHHHHHHHHHhcc-cCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HH-HHHHHHHHHHHcCCHHHHHHHHH
Q 036072 331 KEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD-VV-AHNIMLEGLLKIGKRSDAIKLFE 407 (631)
Q Consensus 331 ~~A~~l~~~m~~~-~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~-ty~~li~~~~~~g~~~~A~~ll~ 407 (631)
++|..+|++..+. .+.+...|..++..+.+.|++++|..+|++..+. .|+ .. .|..+...+.+.|++++|..+|+
T Consensus 81 ~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~ 158 (308)
T 2ond_A 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI--EDIDPTLVYIQYMKFARRAEGIKSGRMIFK 158 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS--SSSCTHHHHHHHHHHHHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--cccCccHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 4555555554442 2223345555555555555555555555555542 222 22 45555555555555555555555
Q ss_pred HHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHH-HhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH
Q 036072 408 VMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITG-FGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDE 486 (631)
Q Consensus 408 ~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~-~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 486 (631)
...+.... +... |...... +...|++++|..+|+...+... -+...|..++..+.+.|+.++
T Consensus 159 ~a~~~~p~-~~~~---------------~~~~a~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~g~~~~ 221 (308)
T 2ond_A 159 KAREDART-RHHV---------------YVTAALMEYYCSKDKSVAFKIFELGLKKYG-DIPEYVLAYIDYLSHLNEDNN 221 (308)
T ss_dssp HHHTSTTC-CTHH---------------HHHHHHHHHHTSCCHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHTTCCHHH
T ss_pred HHHhcCCC-CHHH---------------HHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CcHHHHHHHHHHHHHCCCHHH
Confidence 55543211 1111 1111111 1124666666666666655422 255666666666777777777
Q ss_pred HHHHHHHHHHCC-CCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036072 487 AVRIYKEMVRSG-FKP--TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532 (631)
Q Consensus 487 A~~l~~~m~~~g-~~p--~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~ 532 (631)
|..+|++..+.. +.| ....|..++..+...|+.+.|..+++++.+.
T Consensus 222 A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 222 TRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 777777777652 333 3556666677777777777777777776654
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.28 E-value=7.5e-10 Score=102.31 Aligned_cols=171 Identities=11% Similarity=0.002 Sum_probs=154.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 036072 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLEN 323 (631)
Q Consensus 244 ~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~ 323 (631)
+..+|..+-..+.+.|++++|+..|++..+..+-+..++..+..++...|++++|+..+....... +.+...+..+...
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~ 82 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGSA 82 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHHH
Confidence 478899999999999999999999999999988899999999999999999999999999998875 5567788888889
Q ss_pred HHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 036072 324 LGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAI 403 (631)
Q Consensus 324 ~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~ 403 (631)
+...++++.|...+.+.....+.+...+..+...|.+.|++++|++.|++..+.. +-+..+|..+..+|.+.|++++|+
T Consensus 83 ~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~A~ 161 (184)
T 3vtx_A 83 NFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDEAV 161 (184)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHHHH
Confidence 9999999999999999887777788999999999999999999999999999863 346788999999999999999999
Q ss_pred HHHHHHHHcCCCCcH
Q 036072 404 KLFEVMKAKGPSPNV 418 (631)
Q Consensus 404 ~ll~~m~~~g~~p~~ 418 (631)
+.|++..+. .|+.
T Consensus 162 ~~~~~al~~--~p~~ 174 (184)
T 3vtx_A 162 KYFKKALEK--EEKK 174 (184)
T ss_dssp HHHHHHHHT--THHH
T ss_pred HHHHHHHhC--CccC
Confidence 999999874 4543
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.28 E-value=5.6e-10 Score=119.39 Aligned_cols=340 Identities=10% Similarity=-0.010 Sum_probs=206.9
Q ss_pred hHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCCh---hHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcc-----CHHHH
Q 036072 227 PAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQF---ETMVSMLEEMGEKGLLSMETFKIAMNAFAAAK-----ERKKA 298 (631)
Q Consensus 227 ~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~---~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g-----~~~~A 298 (631)
.|.+.|....+. | +...+..+-..|...|+. ++|...|++..+. ++..+..+...+...+ +.++|
T Consensus 21 ~A~~~~~~aa~~-g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---~~~A~~~Lg~~~~~~~~~~~~~~~~A 93 (452)
T 3e4b_A 21 TAQQNYQQLAEL-G---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---SPRAQARLGRLLAAKPGATEAEHHEA 93 (452)
T ss_dssp HHHHHHHHHHHH-T---CCTGGGTCC-------------------------------CHHHHHHHHHTC--CCHHHHHHH
T ss_pred HHHHHHHHHHHC-C---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---CHHHHHHHHHHHHhCCCCCCcCHHHH
Confidence 466666665432 2 233444455555556666 8888888888755 5555666666454444 77889
Q ss_pred HHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcc-cCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036072 299 VAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK 377 (631)
Q Consensus 299 ~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~-~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~ 377 (631)
+..|+...+.|.. + .+..|...|...+..+.+.+.++.+... -..+...+..|...|...+.++++......+.+.
T Consensus 94 ~~~~~~Aa~~g~~-~--A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~~a~~~Lg~~y~~~~~~~~~~~~a~~~~~~ 170 (452)
T 3e4b_A 94 ESLLKKAFANGEG-N--TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYPEAGLAQVLLYRTQGTYDQHLDDVERICKA 170 (452)
T ss_dssp HHHHHHHHHTTCS-S--CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCTTHHHHHHHHHHHHTCGGGGHHHHHHHHHH
T ss_pred HHHHHHHHHCCCH-H--HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHH
Confidence 9999998887632 2 5666777776655444333333333221 1124567777888888888655555443333332
Q ss_pred CCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhcc----CCHH
Q 036072 378 GFKPDVVAHNIMLEGLLKIG---KRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNR----RRMD 450 (631)
Q Consensus 378 g~~p~~~ty~~li~~~~~~g---~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~----g~~~ 450 (631)
-...+...+..|...|...| +.++|++.|+...+.|..... .+..|...|... ++++
T Consensus 171 a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~----------------~~~~Lg~~y~~g~~~~~d~~ 234 (452)
T 3e4b_A 171 ALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQ----------------RVDSVARVLGDATLGTPDEK 234 (452)
T ss_dssp HTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHH----------------HHHHHHHHHTCGGGSSCCHH
T ss_pred HHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHH----------------HHHHHHHHHhCCCCCCCCHH
Confidence 12223337778888888888 889999999988887754222 122334444433 7899
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHH-H--HhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-----CHHHH
Q 036072 451 IVYDLLKEMEERGCPPDGLTYNALIKL-M--KIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG-----NYEMG 522 (631)
Q Consensus 451 ~A~~l~~~m~~~g~~p~~~t~~~li~~-~--~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g-----~~~~A 522 (631)
+|.+.|+... .| +...+..|-.. + ...++.++|.++|++..+.| +...+..|...|. .| ++++|
T Consensus 235 ~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~-~G~g~~~d~~~A 306 (452)
T 3e4b_A 235 TAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY-EGKWVPADAKAA 306 (452)
T ss_dssp HHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred HHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence 9999999877 33 44555555555 3 45789999999999998877 5677777777777 55 89999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHH
Q 036072 523 RKVWDEMIRRGCCPDDNSYTVLIGGLIS----QDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR----AGRSYVLDE 594 (631)
Q Consensus 523 ~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~ 594 (631)
...|++.. .| +...+..|...|.. ..+.++|..+|++..+.|. ...+..|...|.. ..+.++|..
T Consensus 307 ~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~G~g~~~d~~~A~~ 379 (452)
T 3e4b_A 307 EAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQ---NSADFAIAQLFSQGKGTKPDPLNAYV 379 (452)
T ss_dssp HHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTC---TTHHHHHHHHHHSCTTBCCCHHHHHH
T ss_pred HHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhCh---HHHHHHHHHHHHhCCCCCCCHHHHHH
Confidence 99999887 43 66777777766665 3488999999999988873 2345566666654 457888999
Q ss_pred HHHHHHhcCCCch
Q 036072 595 LAQKMRFSGKFEV 607 (631)
Q Consensus 595 l~~~m~~~g~~~~ 607 (631)
++++....|....
T Consensus 380 ~~~~A~~~g~~~a 392 (452)
T 3e4b_A 380 FSQLAKAQDTPEA 392 (452)
T ss_dssp HHHHHHTTCCHHH
T ss_pred HHHHHHHCCCHHH
Confidence 9988888776433
|
| >2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7 | Back alignment and structure |
|---|
Probab=99.26 E-value=4.5e-09 Score=106.13 Aligned_cols=219 Identities=9% Similarity=0.028 Sum_probs=126.5
Q ss_pred HHHHHHHHHHhcccCCChhhHHHHHHHHHh-------cCCH-------HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc
Q 036072 331 KEAQLLFDKLKHRFTPNLTTYTVLLGGWCR-------VKNL-------MEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKI 396 (631)
Q Consensus 331 ~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~-------~g~~-------~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~ 396 (631)
++|..+|++.....+.+...|..++..+.. .|++ ++|..+|++..+.-.+-+...|..++..+.+.
T Consensus 33 ~~a~~~~~~al~~~p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~~ 112 (308)
T 2ond_A 33 KRVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESR 112 (308)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhc
Confidence 567777777776666677778777777653 4664 67777777777631122445677777777777
Q ss_pred CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHH-HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036072 397 GKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAA-VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALI 475 (631)
Q Consensus 397 g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~-~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li 475 (631)
|++++|.++|+++.+. .|+ +.. +|..++..+.+.|++++|..+|++..+... .+...|....
T Consensus 113 ~~~~~A~~~~~~al~~--~p~--------------~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~a 175 (308)
T 2ond_A 113 MKYEKVHSIYNRLLAI--EDI--------------DPTLVYIQYMKFARRAEGIKSGRMIFKKAREDAR-TRHHVYVTAA 175 (308)
T ss_dssp TCHHHHHHHHHHHHTS--SSS--------------CTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTSTT-CCTHHHHHHH
T ss_pred CCHHHHHHHHHHHHhc--ccc--------------CccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCC-CCHHHHHHHH
Confidence 7777777777777653 332 111 344555555566666666666666665432 2233333222
Q ss_pred HHHH-hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHHc
Q 036072 476 KLMK-IQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG-CCP--DDNSYTVLIGGLISQ 551 (631)
Q Consensus 476 ~~~~-~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g-~~p--~~~t~~~li~~~~~~ 551 (631)
.... ..|+.++|..+|++..+.. +-+...|..++..+.+.|++++|..+|++..... +.| ....|..++..+.+.
T Consensus 176 ~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~ 254 (308)
T 2ond_A 176 LMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNI 254 (308)
T ss_dssp HHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHc
Confidence 2211 2466666666666665531 2245555556666666666666666666666542 222 344555556555566
Q ss_pred CCHHHHHHHHHHHHHC
Q 036072 552 DRSGEAYKYLEEMLEK 567 (631)
Q Consensus 552 g~~~~A~~ll~~m~~~ 567 (631)
|+.++|..+++++.+.
T Consensus 255 g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 255 GDLASILKVEKRRFTA 270 (308)
T ss_dssp SCHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHH
Confidence 6666666666665543
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.25 E-value=6.1e-11 Score=118.97 Aligned_cols=240 Identities=17% Similarity=0.145 Sum_probs=163.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-------CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------C
Q 036072 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK-------GFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK------G 413 (631)
Q Consensus 347 ~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~-------g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~------g 413 (631)
+..++..+...+...|++++|..+|+++.+. .......++..+...|...|++++|...+++..+. +
T Consensus 26 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 105 (311)
T 3nf1_A 26 RLRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGK 105 (311)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCC
Confidence 4556777888888888888888888877763 22234566777888888889999999888887653 1
Q ss_pred CCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc------CCCC-CHHHHHHHHHHHHhcCChhH
Q 036072 414 PSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEER------GCPP-DGLTYNALIKLMKIQKMPDE 486 (631)
Q Consensus 414 ~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p-~~~t~~~li~~~~~~g~~~~ 486 (631)
..|. ...++..+...|...|++++|...+++..+. +-.| ....+..+...+...|++++
T Consensus 106 ~~~~--------------~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~ 171 (311)
T 3nf1_A 106 DHPA--------------VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEE 171 (311)
T ss_dssp TCHH--------------HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHH
T ss_pred CChH--------------HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHH
Confidence 1111 2345677888999999999999999988764 2222 34567888889999999999
Q ss_pred HHHHHHHHHHC------CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-------CCCCC-------HHHHHHHH
Q 036072 487 AVRIYKEMVRS------GFKP-TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR-------GCCPD-------DNSYTVLI 545 (631)
Q Consensus 487 A~~l~~~m~~~------g~~p-~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~-------g~~p~-------~~t~~~li 545 (631)
|+++++++.+. +..| ...++..+..+|...|++++|...++++.+. ...+. ...+..+.
T Consensus 172 A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 251 (311)
T 3nf1_A 172 VEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECK 251 (311)
T ss_dssp HHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhc
Confidence 99999998864 2122 3567888999999999999999999998863 11111 12222233
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036072 546 GGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRF 601 (631)
Q Consensus 546 ~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 601 (631)
..+...+.+.+|...++...... .....++..+..+|.+.|++++|.+++++...
T Consensus 252 ~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 252 GKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp ------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 33444556666666676665432 23456688999999999999999999988754
|
| >3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens} | Back alignment and structure |
|---|
Probab=99.24 E-value=6.3e-11 Score=118.86 Aligned_cols=132 Identities=15% Similarity=0.060 Sum_probs=82.0
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHhcc--------cCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc------CCCC
Q 036072 316 TINCLLENLGRSKLPKEAQLLFDKLKHR--------FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK------GFKP 381 (631)
Q Consensus 316 ~~~~Ll~~~~~~g~~~~A~~l~~~m~~~--------~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~------g~~p 381 (631)
++..+...|...|++++|...+++..+. .+....++..+...|...|++++|...|++..+. +..|
T Consensus 71 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 150 (311)
T 3nf1_A 71 MLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHP 150 (311)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCCh
Confidence 3444444444445555554444443221 1122445666667777777777777777766643 1112
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHH
Q 036072 382 -DVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK------GPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYD 454 (631)
Q Consensus 382 -~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~------g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~ 454 (631)
....+..+...+...|++++|+++++++.+. +..|. ...++..+...|...|++++|..
T Consensus 151 ~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~--------------~~~~~~~la~~~~~~g~~~~A~~ 216 (311)
T 3nf1_A 151 DVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPN--------------VAKTKNNLASCYLKQGKFKQAET 216 (311)
T ss_dssp HHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHH--------------HHHHHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHH--------------HHHHHHHHHHHHHHcCCHHHHHH
Confidence 3455777778888888888888888887653 11221 23456677888888999999999
Q ss_pred HHHHHHH
Q 036072 455 LLKEMEE 461 (631)
Q Consensus 455 l~~~m~~ 461 (631)
.++++.+
T Consensus 217 ~~~~al~ 223 (311)
T 3nf1_A 217 LYKEILT 223 (311)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9988875
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.24 E-value=7.6e-10 Score=115.42 Aligned_cols=234 Identities=9% Similarity=-0.022 Sum_probs=172.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-Cc-HHHHHHHHH
Q 036072 354 LLGGWCRVKNLMEAGRVWNEMIDK----GFKP-DVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS-PN-VRSYTIMIW 426 (631)
Q Consensus 354 Li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~-p~-~~~~~~li~ 426 (631)
....+...|++++|...|++..+. +-.+ ...+|..+...|...|++++|++.+.+..+.-.. ++ ...
T Consensus 109 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~------ 182 (383)
T 3ulq_A 109 RGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIR------ 182 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHH------
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHH------
Confidence 556677889999999999888763 1111 2457788888999999999999999887753111 11 110
Q ss_pred HHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHC----
Q 036072 427 KFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP-PD----GLTYNALIKLMKIQKMPDEAVRIYKEMVRS---- 497 (631)
Q Consensus 427 ~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~~li~~~~~~g~~~~A~~l~~~m~~~---- 497 (631)
...+++.+...|...|++++|.+.|.+..+.... .+ ..++..+...|...|++++|...+++..+.
T Consensus 183 -----~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~ 257 (383)
T 3ulq_A 183 -----LLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEES 257 (383)
T ss_dssp -----HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHT
T ss_pred -----HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhh
Confidence 2346777889999999999999999887643111 12 247888889999999999999999998872
Q ss_pred CC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCC
Q 036072 498 GF-KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR----GCCPDDNSYTVLIGGLISQDR---SGEAYKYLEEMLEKGM 569 (631)
Q Consensus 498 g~-~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~~t~~~li~~~~~~g~---~~~A~~ll~~m~~~g~ 569 (631)
+. .....++..+..+|...|++++|...+++..+. +-......+..+...+...|+ .++|+.++++. +.
T Consensus 258 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~ 334 (383)
T 3ulq_A 258 NILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---ML 334 (383)
T ss_dssp TCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TC
T ss_pred ccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cC
Confidence 33 334678899999999999999999999988753 111122335667777788888 77777777765 32
Q ss_pred CCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036072 570 KAP-VLDYNKFAADLSRAGRSYVLDELAQKMRF 601 (631)
Q Consensus 570 ~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 601 (631)
.++ ...+..+...|...|++++|.+.+++...
T Consensus 335 ~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 335 YADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 332 34577899999999999999999998764
|
| >3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A | Back alignment and structure |
|---|
Probab=99.23 E-value=2.7e-09 Score=98.53 Aligned_cols=168 Identities=13% Similarity=0.055 Sum_probs=147.6
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036072 432 NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMK 511 (631)
Q Consensus 432 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~ 511 (631)
++.+|..+...|...|++++|.+.|++..+.... +...+..+..+|.+.|++++|...+....... .-+...+..+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~ 81 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPN-NVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILGS 81 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHHH
Confidence 4667889999999999999999999999887543 77889999999999999999999999998764 346777888889
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 036072 512 SYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYV 591 (631)
Q Consensus 512 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 591 (631)
.+...++++.|...+.+..+.... +...+..+...|...|++++|++.|++..+.. +.+...|..+..+|.+.|++++
T Consensus 82 ~~~~~~~~~~a~~~~~~a~~~~~~-~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~~ 159 (184)
T 3vtx_A 82 ANFMIDEKQAAIDALQRAIALNTV-YADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRDE 159 (184)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCcc-chHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHHH
Confidence 999999999999999999886443 78889999999999999999999999999864 4567889999999999999999
Q ss_pred HHHHHHHHHhcC
Q 036072 592 LDELAQKMRFSG 603 (631)
Q Consensus 592 A~~l~~~m~~~g 603 (631)
|.+.+++..+..
T Consensus 160 A~~~~~~al~~~ 171 (184)
T 3vtx_A 160 AVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHTT
T ss_pred HHHHHHHHHhCC
Confidence 999999886543
|
| >3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.22 E-value=9.3e-10 Score=114.76 Aligned_cols=296 Identities=8% Similarity=-0.031 Sum_probs=205.9
Q ss_pred HHhcCChhHHHHHHHHHHHCCC---CCHH--HHHHHHHH--HHHccCHHHHH-----------HHHHHHHhCCCCcCHHH
Q 036072 255 LGRARQFETMVSMLEEMGEKGL---LSME--TFKIAMNA--FAAAKERKKAV-----------AIFELMNKYKFKAGVDT 316 (631)
Q Consensus 255 ~~~~g~~~~A~~l~~~m~~~g~---~~~~--~~~~li~~--~~~~g~~~~A~-----------~v~~~m~~~g~~~~~~~ 316 (631)
+.+.+++++|..+++++.+.-. .+.. .|-.++.. ....+..+.+. +.++.+.... .+...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~--~~~~~ 99 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQ--ARLTG 99 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHT--HHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcC--CCchh
Confidence 3467899999999998865421 2333 33333322 22234444444 6666665432 11111
Q ss_pred ------HHHHHHHHHcCCChHHHHHHHHHHhcc---cCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CC--
Q 036072 317 ------INCLLENLGRSKLPKEAQLLFDKLKHR---FTP---NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGF-KP-- 381 (631)
Q Consensus 317 ------~~~Ll~~~~~~g~~~~A~~l~~~m~~~---~~p---~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~-~p-- 381 (631)
+......+...|++++|...|++..+. ... ...+|..+...|...|++++|...+++..+.-- .+
T Consensus 100 ~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 100 LLEYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 222556678889999999999997542 221 245788999999999999999999998875311 11
Q ss_pred ---CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHH
Q 036072 382 ---DVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS-PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLK 457 (631)
Q Consensus 382 ---~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~-p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~ 457 (631)
...+++.+...|...|++++|++.+++..+.... .+... ...++..+...|...|++++|...|+
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----------~~~~~~~lg~~y~~~g~~~~A~~~~~ 248 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQL-----------MGRTLYNIGLCKNSQSQYEDAIPYFK 248 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH-----------HHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHH-----------HHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 2457888889999999999999999888753111 11111 12457778899999999999999999
Q ss_pred HHHHc----CC-CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCCHHHHHHHHHHHHHcCC---HHHHHHH
Q 036072 458 EMEER----GC-PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS----GFKPTIHTYNMIMKSYFQTGN---YEMGRKV 525 (631)
Q Consensus 458 ~m~~~----g~-~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~~t~~~Li~~~~~~g~---~~~A~~~ 525 (631)
+..+. +. +....++..+...|.+.|++++|...+++..+. +-......+..+...|...|+ +++|..+
T Consensus 249 ~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~ 328 (383)
T 3ulq_A 249 RAIAVFEESNILPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDF 328 (383)
T ss_dssp HHHHHHHHTTCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHH
T ss_pred HHHHHHHhhccchhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHH
Confidence 88762 23 334667888999999999999999999988753 212223345677888888898 7777777
Q ss_pred HHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 526 WDEMIRRGCCP-DDNSYTVLIGGLISQDRSGEAYKYLEEMLE 566 (631)
Q Consensus 526 ~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~ll~~m~~ 566 (631)
+++. +..+ ....+..+...|...|++++|.+++++..+
T Consensus 329 ~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 329 LESK---MLYADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHC---cCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 7765 2222 244677888999999999999999998875
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.21 E-value=4.8e-10 Score=120.72 Aligned_cols=214 Identities=8% Similarity=-0.028 Sum_probs=158.2
Q ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCCh-HHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 036072 295 RKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLP-KEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNE 373 (631)
Q Consensus 295 ~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~-~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~ 373 (631)
++++++.++...... +.+...+..+...|...|++ ++|...|++..+..+.+...|..+...|.+.|++++|.+.|++
T Consensus 84 ~~~al~~l~~~~~~~-~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~ 162 (474)
T 4abn_A 84 MEKTLQQMEEVLGSA-QVEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSG 162 (474)
T ss_dssp HHHHHHHHHHHHTTC-CCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccC-chhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 455566666555543 45777888888888888898 9999998888776666788999999999999999999999999
Q ss_pred HHHcCCCCCHHHHHHHHHHHHHc---------CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHh
Q 036072 374 MIDKGFKPDVVAHNIMLEGLLKI---------GKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFG 444 (631)
Q Consensus 374 m~~~g~~p~~~ty~~li~~~~~~---------g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~ 444 (631)
..+. .|+...+..+...|... |++++|++.|++..+. .|+ +...|..+..+|.
T Consensus 163 al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~--~p~--------------~~~~~~~lg~~~~ 224 (474)
T 4abn_A 163 ALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM--DVL--------------DGRSWYILGNAYL 224 (474)
T ss_dssp HHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH--CTT--------------CHHHHHHHHHHHH
T ss_pred HHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHh--CCC--------------CHHHHHHHHHHHH
Confidence 9875 47778888888999998 9999999999999875 343 4445566666666
Q ss_pred cc--------CCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036072 445 NR--------RRMDIVYDLLKEMEERGCP--PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514 (631)
Q Consensus 445 ~~--------g~~~~A~~l~~~m~~~g~~--p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~ 514 (631)
.. |++++|...|++..+.... -+...|..+..+|...|++++|.+.|++..+.. +-+...+..+..++.
T Consensus 225 ~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~ 303 (474)
T 4abn_A 225 SLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLE 303 (474)
T ss_dssp HHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 66 7778888888777764220 256677777777777777777777777776643 234556666677777
Q ss_pred HcCCHHHHHHHHHH
Q 036072 515 QTGNYEMGRKVWDE 528 (631)
Q Consensus 515 ~~g~~~~A~~~~~~ 528 (631)
..|++++|.+.+..
T Consensus 304 ~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 304 FLSRLTSLLESKGK 317 (474)
T ss_dssp HHHHHHHHHHHTTT
T ss_pred HHHHHHHHHHHhcc
Confidence 77777766665443
|
| >3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens} | Back alignment and structure |
|---|
Probab=99.21 E-value=9.7e-10 Score=117.53 Aligned_cols=316 Identities=12% Similarity=0.031 Sum_probs=207.9
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCH---HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcC
Q 036072 251 MMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKER---KKAVAIFELMNKYKFKAGVDTINCLLENLGRS 327 (631)
Q Consensus 251 li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~---~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~ 327 (631)
+...+.+.|++++|..+|++..+.|.+ ..+..+...|...|+. ++|++.|+...+. +...+..|...+...
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~~--~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg~~~~~~ 82 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGYS--EAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLGRLLAAK 82 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTCC--TGGGTCC--------------------------------CHHHHHHHHHTC
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCCH--HHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHHHHHHhC
Confidence 566777889999999999999887643 3444555666667777 8999999988864 566677777755555
Q ss_pred C-----ChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHH---HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 036072 328 K-----LPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLM---EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399 (631)
Q Consensus 328 g-----~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~---~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~ 399 (631)
+ +.++|...|++..+.. +...+..|...|...+..+ ++.+.+......|. ...+..+...|...+.+
T Consensus 83 ~~~~~~~~~~A~~~~~~Aa~~g--~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~---~~a~~~Lg~~y~~~~~~ 157 (452)
T 3e4b_A 83 PGATEAEHHEAESLLKKAFANG--EGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGY---PEAGLAQVLLYRTQGTY 157 (452)
T ss_dssp --CCHHHHHHHHHHHHHHHHTT--CSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTC---TTHHHHHHHHHHHHTCG
T ss_pred CCCCCcCHHHHHHHHHHHHHCC--CHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCC---HHHHHHHHHHHHcCCCc
Confidence 4 7789999999876532 3447888888888776544 34555555555543 44566677777777755
Q ss_pred HHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccC---CHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036072 400 SDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRR---RMDIVYDLLKEMEERGCPPDGLTYNALIK 476 (631)
Q Consensus 400 ~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g---~~~~A~~l~~~m~~~g~~p~~~t~~~li~ 476 (631)
+++......+.+.-... ++..+..|...|...| +.++|++.|+...+.|.. +...+..|..
T Consensus 158 ~~~~~~a~~~~~~a~~~---------------~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~-~a~~~~~Lg~ 221 (452)
T 3e4b_A 158 DQHLDDVERICKAALNT---------------TDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTV-TAQRVDSVAR 221 (452)
T ss_dssp GGGHHHHHHHHHHHTTT---------------CTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCS-CHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHcC---------------CHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCH-HHHHHHHHHH
Confidence 55444433332211111 2234555677777788 999999999999988754 5555556666
Q ss_pred HHHhc----CChhHHHHHHHHHHHCCCCCCHHHHHHHHHH-H--HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 036072 477 LMKIQ----KMPDEAVRIYKEMVRSGFKPTIHTYNMIMKS-Y--FQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLI 549 (631)
Q Consensus 477 ~~~~~----g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~-~--~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~ 549 (631)
.|... ++.++|..+|++.. .| +...+..|... | ...+++++|.+.|++..+.| +...+..|...|.
T Consensus 222 ~y~~g~~~~~d~~~A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~ 294 (452)
T 3e4b_A 222 VLGDATLGTPDEKTAQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD---QPRAELLLGKLYY 294 (452)
T ss_dssp HHTCGGGSSCCHHHHHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHhCCCCCCCCHHHHHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 66544 69999999999987 43 45566666666 3 45899999999999999887 7778888887777
Q ss_pred HcC-----CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCC
Q 036072 550 SQD-----RSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSR----AGRSYVLDELAQKMRFSGKF 605 (631)
Q Consensus 550 ~~g-----~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~ 605 (631)
.| ++++|.++|++.. .| +...+..|...|.. ..+.++|.+++++.-+.|..
T Consensus 295 -~G~g~~~d~~~A~~~~~~Aa-~g---~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 354 (452)
T 3e4b_A 295 -EGKWVPADAKAAEAHFEKAV-GR---EVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQN 354 (452)
T ss_dssp -HCSSSCCCHHHHHHHHHTTT-TT---CHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCT
T ss_pred -cCCCCCCCHHHHHHHHHHHh-CC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChH
Confidence 55 9999999999988 44 56677778877776 34899999999998887764
|
| >4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus} | Back alignment and structure |
|---|
Probab=99.19 E-value=6.9e-10 Score=119.44 Aligned_cols=158 Identities=9% Similarity=-0.022 Sum_probs=81.1
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhc---------CChhHHHHHHHHHHHCCCCCCHHHH
Q 036072 436 YTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQ---------KMPDEAVRIYKEMVRSGFKPTIHTY 506 (631)
Q Consensus 436 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~---------g~~~~A~~l~~~m~~~g~~p~~~t~ 506 (631)
|..+...|...|++++|.+.|++..+. .|+...+..+...|... |++++|+..|++..+.. +-+...|
T Consensus 140 ~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~ 216 (474)
T 4abn_A 140 WNQLGEVYWKKGDVTSAHTCFSGALTH--CKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSW 216 (474)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHTT--CCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHH
Confidence 333444444444444444444444433 23334444444444444 55555555555555432 2234555
Q ss_pred HHHHHHHHHc--------CCHHHHHHHHHHHHHcCCC--CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHH
Q 036072 507 NMIMKSYFQT--------GNYEMGRKVWDEMIRRGCC--PDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDY 576 (631)
Q Consensus 507 ~~Li~~~~~~--------g~~~~A~~~~~~m~~~g~~--p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~ 576 (631)
..+..+|... |++++|...|++..+.... -+...|..+..+|...|++++|.+.|++..+.. +-+...+
T Consensus 217 ~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~ 295 (474)
T 4abn_A 217 YILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQ 295 (474)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 5555555555 5566666666665554220 155556666666666666666666666665542 2234455
Q ss_pred HHHHHHHHhcCCHHHHHHHHH
Q 036072 577 NKFAADLSRAGRSYVLDELAQ 597 (631)
Q Consensus 577 ~~li~~~~~~g~~~~A~~l~~ 597 (631)
..+..++...|++++|.+.+.
T Consensus 296 ~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 296 QREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp HHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 555666666666665555443
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.17 E-value=2.5e-09 Score=97.90 Aligned_cols=166 Identities=12% Similarity=0.050 Sum_probs=148.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENL 324 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~ 324 (631)
...|..+...+...|++++|...++++.+..+.+..++..+...+...|++++|.+.++.+.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 45677788889999999999999999988777788899999999999999999999999998874 55788899999999
Q ss_pred HcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 036072 325 GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIK 404 (631)
Q Consensus 325 ~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ 404 (631)
...|++++|...++++.+..+.+...+..+...+...|++++|...++++.+.. ..+...+..+...+...|++++|.+
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 165 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEALP 165 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999887777788899999999999999999999999998864 3467889999999999999999999
Q ss_pred HHHHHHHc
Q 036072 405 LFEVMKAK 412 (631)
Q Consensus 405 ll~~m~~~ 412 (631)
.++.+.+.
T Consensus 166 ~~~~~~~~ 173 (186)
T 3as5_A 166 HFKKANEL 173 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHc
Confidence 99988764
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=99.16 E-value=2e-07 Score=103.72 Aligned_cols=168 Identities=14% Similarity=0.053 Sum_probs=83.3
Q ss_pred CHHHHHHHHHHHhccCCHHHHH-HHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC---------CCC
Q 036072 432 NAAVYTCLITGFGNRRRMDIVY-DLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSG---------FKP 501 (631)
Q Consensus 432 ~~~~~~~li~~~~~~g~~~~A~-~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g---------~~p 501 (631)
....|-..+..+...|+.++|. ++|+..... ++.+...|-..+....+.|++++|.++|+.+.+.. -.|
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p 420 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDP 420 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHST
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccC
Confidence 4445555555555555555564 666655543 23344445555555556666666666666655421 012
Q ss_pred C------------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHC
Q 036072 502 T------------IHTYNMIMKSYFQTGNYEMGRKVWDEMIRR-GCCPDDNSYTVLIGGLISQ-DRSGEAYKYLEEMLEK 567 (631)
Q Consensus 502 ~------------~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~-g~~p~~~t~~~li~~~~~~-g~~~~A~~ll~~m~~~ 567 (631)
+ ..+|...+....+.|+.+.|..+|....+. +.. ....|...+..-.+. ++.+.|.++|+..++.
T Consensus 421 ~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~-~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~ 499 (679)
T 4e6h_A 421 TNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLV-TPDIYLENAYIEYHISKDTKTACKVLELGLKY 499 (679)
T ss_dssp TCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGS-CTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred cchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCC-ChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 1 224555555555556666666666666543 111 122222221111222 3356666666666554
Q ss_pred CCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc
Q 036072 568 GMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFS 602 (631)
Q Consensus 568 g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 602 (631)
++-+...+..++......|+.+.|..+|++....
T Consensus 500 -~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~ 533 (679)
T 4e6h_A 500 -FATDGEYINKYLDFLIYVNEESQVKSLFESSIDK 533 (679)
T ss_dssp -HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTT
T ss_pred -CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHh
Confidence 2334444555555555566666666666655443
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.16 E-value=1.7e-08 Score=104.61 Aligned_cols=270 Identities=12% Similarity=-0.002 Sum_probs=163.9
Q ss_pred HHHHHccCHHHHHHHHHHHHhCCCCcCH----HHHHHHHHHHHcCCChHHHHHHHHHHhcc--cCCC----hhhHHHHHH
Q 036072 287 NAFAAAKERKKAVAIFELMNKYKFKAGV----DTINCLLENLGRSKLPKEAQLLFDKLKHR--FTPN----LTTYTVLLG 356 (631)
Q Consensus 287 ~~~~~~g~~~~A~~v~~~m~~~g~~~~~----~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~--~~p~----~~~y~~Li~ 356 (631)
..+...|++++|...++......-..+. .+++.+...+...|++++|...+++.... -..+ ..+++.+..
T Consensus 22 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~ 101 (373)
T 1hz4_A 22 QVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSE 101 (373)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 3444555666666665555543211121 13444555566666666666666665331 1111 123556667
Q ss_pred HHHhcCCHHHHHHHHHHHHHc----CCC--C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 036072 357 GWCRVKNLMEAGRVWNEMIDK----GFK--P-DVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFC 429 (631)
Q Consensus 357 ~~~~~g~~~~A~~l~~~m~~~----g~~--p-~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~ 429 (631)
.+...|++++|...+++..+. +.. | ....+..+...+...|++++|...+++............
T Consensus 102 ~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~--------- 172 (373)
T 1hz4_A 102 ILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ--------- 172 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG---------
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHH---------
Confidence 777778888888777776642 221 2 234555667777888888888888887765432211100
Q ss_pred hcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC--HHHHH----HHHHHHHhcCChhHHHHHHHHHHHCCCCC--
Q 036072 430 KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPD--GLTYN----ALIKLMKIQKMPDEAVRIYKEMVRSGFKP-- 501 (631)
Q Consensus 430 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~----~li~~~~~~g~~~~A~~l~~~m~~~g~~p-- 501 (631)
....+..+...+...|++++|...+++.......++ ..... ..+..+...|++++|...+++..+....+
T Consensus 173 --~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~ 250 (373)
T 1hz4_A 173 --QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNH 250 (373)
T ss_dssp --GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCG
T ss_pred --HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcch
Confidence 112355566777788888888888887764311111 11111 23344778899999999988876543211
Q ss_pred -CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 036072 502 -TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR----GCCPDD-NSYTVLIGGLISQDRSGEAYKYLEEMLEK 567 (631)
Q Consensus 502 -~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~----g~~p~~-~t~~~li~~~~~~g~~~~A~~ll~~m~~~ 567 (631)
....+..+...+...|++++|...+++.... |..++. ..+..+..++...|+.++|...+++....
T Consensus 251 ~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 251 FLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 1335667788888999999999999887643 222222 25666677788899999999999887653
|
| >1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2 | Back alignment and structure |
|---|
Probab=99.13 E-value=2.7e-08 Score=102.99 Aligned_cols=275 Identities=8% Similarity=-0.015 Sum_probs=196.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CHH----HHHHHHHHHHHccCHHHHHHHHHHHHhCCC-CcC----HHHH
Q 036072 248 YNSMMSILGRARQFETMVSMLEEMGEKGLL-SME----TFKIAMNAFAAAKERKKAVAIFELMNKYKF-KAG----VDTI 317 (631)
Q Consensus 248 y~~li~~~~~~g~~~~A~~l~~~m~~~g~~-~~~----~~~~li~~~~~~g~~~~A~~v~~~m~~~g~-~~~----~~~~ 317 (631)
+......+...|++++|...+++....... +.. ++..+...+...|++++|.+.++...+..- ..+ ..++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 334445566789999999999998776543 222 566777888899999999999988875311 111 2335
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHhcc-----cC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC----CCHHH
Q 036072 318 NCLLENLGRSKLPKEAQLLFDKLKHR-----FT--P-NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFK----PDVVA 385 (631)
Q Consensus 318 ~~Ll~~~~~~g~~~~A~~l~~~m~~~-----~~--p-~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~----p~~~t 385 (631)
..+...+...|++++|...+++..+. .. | ....+..+...+...|++++|...+++....... ....+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 66778889999999999999987542 11 2 2346677888999999999999999998764221 12456
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcH-HHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCC
Q 036072 386 HNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNV-RSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGC 464 (631)
Q Consensus 386 y~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~-~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 464 (631)
|..+...+...|++++|...+++.......++. ..+... .....+..+...|++++|...+++..+...
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~ 246 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISN----------ANKVRVIYWQMTGDKAAAANWLRHTAKPEF 246 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHH----------HHHHHHHHHHHTTCHHHHHHHHHHSCCCCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHH----------HHHHHHHHHHHCCCHHHHHHHHHhCCCCCC
Confidence 778888999999999999999988754222111 111110 111234457788999999999988765432
Q ss_pred CC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036072 465 PP---DGLTYNALIKLMKIQKMPDEAVRIYKEMVRS----GFKPTI-HTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532 (631)
Q Consensus 465 ~p---~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~~-~t~~~Li~~~~~~g~~~~A~~~~~~m~~~ 532 (631)
.+ ....+..+...+...|++++|...+++..+. |..++. ..+..+..++...|+.++|...+++....
T Consensus 247 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~~ 322 (373)
T 1hz4_A 247 ANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKL 322 (373)
T ss_dssp TTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 21 1335677788899999999999999987642 322233 36677788899999999999999988753
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.12 E-value=7.4e-09 Score=107.73 Aligned_cols=235 Identities=10% Similarity=-0.049 Sum_probs=172.0
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-Cc-HHHHHHH
Q 036072 352 TVLLGGWCRVKNLMEAGRVWNEMIDKGF-KPD----VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS-PN-VRSYTIM 424 (631)
Q Consensus 352 ~~Li~~~~~~g~~~~A~~l~~~m~~~g~-~p~----~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~-p~-~~~~~~l 424 (631)
......+...|++++|...|++..+... .++ ..++..+...|...|+++.|...+.+..+.... ++ ...
T Consensus 105 ~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~---- 180 (378)
T 3q15_A 105 FFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIR---- 180 (378)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHH----
T ss_pred HHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhh----
Confidence 3445566788999999999998875411 122 456788888999999999999999887753111 11 110
Q ss_pred HHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHH---
Q 036072 425 IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEER----GCPP-DGLTYNALIKLMKIQKMPDEAVRIYKEMVR--- 496 (631)
Q Consensus 425 i~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~li~~~~~~g~~~~A~~l~~~m~~--- 496 (631)
...+++.+...|...|++++|.+.|.+..+. +-.+ ...++..+...|...|++++|...+++..+
T Consensus 181 -------~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~ 253 (378)
T 3q15_A 181 -------TIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSR 253 (378)
T ss_dssp -------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred -------HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 2345777888999999999999999887653 1111 134677888899999999999999999887
Q ss_pred --CCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----CCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHC
Q 036072 497 --SGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG----CCPDDNSYTVLIGGLISQDR---SGEAYKYLEEMLEK 567 (631)
Q Consensus 497 --~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g----~~p~~~t~~~li~~~~~~g~---~~~A~~ll~~m~~~ 567 (631)
.. +....++..+..+|.+.|++++|...+++..+.. -......+..+...+...++ .++|+.++++ .
T Consensus 254 ~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~ 329 (378)
T 3q15_A 254 EKVP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---K 329 (378)
T ss_dssp HHCG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---T
T ss_pred hhCC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---C
Confidence 33 3337788999999999999999999999988742 12123455666666667788 7777777766 3
Q ss_pred CCCCC-HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036072 568 GMKAP-VLDYNKFAADLSRAGRSYVLDELAQKMRF 601 (631)
Q Consensus 568 g~~p~-~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 601 (631)
+..++ ...+..+...|...|++++|.+.+++...
T Consensus 330 ~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 330 NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 22222 34567899999999999999999998754
|
| >3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A | Back alignment and structure |
|---|
Probab=99.11 E-value=7.4e-09 Score=94.69 Aligned_cols=164 Identities=13% Similarity=-0.005 Sum_probs=142.3
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036072 434 AVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSY 513 (631)
Q Consensus 434 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~ 513 (631)
..+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|..+++++.+.. +.+...+..+...|
T Consensus 9 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 9 VYYRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 345667788888999999999999887653 2367889999999999999999999999998863 44678899999999
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHH
Q 036072 514 FQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLD 593 (631)
Q Consensus 514 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~ 593 (631)
...|++++|.+.++++.+... .+...+..+...+...|++++|.++++++.+.. +.+...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEANP-INFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhcCc-HhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999988643 378889999999999999999999999998874 456788999999999999999999
Q ss_pred HHHHHHHh
Q 036072 594 ELAQKMRF 601 (631)
Q Consensus 594 ~l~~~m~~ 601 (631)
+.+++...
T Consensus 165 ~~~~~~~~ 172 (186)
T 3as5_A 165 PHFKKANE 172 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998754
|
| >3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis} | Back alignment and structure |
|---|
Probab=99.11 E-value=1.7e-08 Score=105.03 Aligned_cols=311 Identities=8% Similarity=-0.065 Sum_probs=210.2
Q ss_pred CCCHHHHHHHHHHH--HhcCChhHHHHHHHHHHHCCC---CCHH--HHHHHHHH--HHHccCHHHHH---------HHHH
Q 036072 242 AHNSRTYNSMMSIL--GRARQFETMVSMLEEMGEKGL---LSME--TFKIAMNA--FAAAKERKKAV---------AIFE 303 (631)
Q Consensus 242 ~p~~~~y~~li~~~--~~~g~~~~A~~l~~~m~~~g~---~~~~--~~~~li~~--~~~~g~~~~A~---------~v~~ 303 (631)
.|+..+-+.+-+.| .+.+++++|..+++++..... .+.. .|-.++.. ....+....+. +.++
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 44555666666666 788999999999998765321 2333 33333332 11123333333 5566
Q ss_pred HHHhCCCCcCH----HHHHHHHHHHHcCCChHHHHHHHHHHhccc--CC----ChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 036072 304 LMNKYKFKAGV----DTINCLLENLGRSKLPKEAQLLFDKLKHRF--TP----NLTTYTVLLGGWCRVKNLMEAGRVWNE 373 (631)
Q Consensus 304 ~m~~~g~~~~~----~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~--~p----~~~~y~~Li~~~~~~g~~~~A~~l~~~ 373 (631)
.+.....+.+. ..+......+...|++++|...|++..+.. .+ ...++..+...|...|++++|...+++
T Consensus 87 ~i~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~ 166 (378)
T 3q15_A 87 TIETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQ 166 (378)
T ss_dssp HHHGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHhccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHH
Confidence 65442211111 122234455678899999999999976421 12 245788899999999999999999998
Q ss_pred HHHcC--C---CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC-CCcHHHHHHHHHHHhhcCHHHHHHHHHHHhcc
Q 036072 374 MIDKG--F---KP-DVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP-SPNVRSYTIMIWKFCKQNAAVYTCLITGFGNR 446 (631)
Q Consensus 374 m~~~g--~---~p-~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~-~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~ 446 (631)
..+.- . .+ ...+++.+...|...|++++|.+.+++..+... ..+... ...++..+...|...
T Consensus 167 al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~-----------~~~~~~~lg~~y~~~ 235 (378)
T 3q15_A 167 ALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRF-----------IAISLLNIANSYDRS 235 (378)
T ss_dssp HHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH-----------HHHHHHHHHHHHHHH
T ss_pred HHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHH-----------HHHHHHHHHHHHHHC
Confidence 77531 1 11 245778888999999999999999988775310 012111 234577788999999
Q ss_pred CCHHHHHHHHHHHHHc----CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC----CCCCHHHHHHHHHHHHHcCC
Q 036072 447 RRMDIVYDLLKEMEER----GCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSG----FKPTIHTYNMIMKSYFQTGN 518 (631)
Q Consensus 447 g~~~~A~~l~~~m~~~----g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p~~~t~~~Li~~~~~~g~ 518 (631)
|++++|...|++..+. +.+....++..+...+.+.|++++|...+++..+.. -......+..+...|...++
T Consensus 236 ~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~ 315 (378)
T 3q15_A 236 GDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVD 315 (378)
T ss_dssp TCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCC
T ss_pred CCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCc
Confidence 9999999999988761 222236788889999999999999999999988732 12223456666666777788
Q ss_pred ---HHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 519 ---YEMGRKVWDEMIRRGCCP-DDNSYTVLIGGLISQDRSGEAYKYLEEMLE 566 (631)
Q Consensus 519 ---~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~ll~~m~~ 566 (631)
+.+|..++++. +..+ ....+..+...|...|++++|.+.|++..+
T Consensus 316 ~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 316 ERKIHDLLSYFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 77777777763 2222 234667788899999999999999998865
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=1e-08 Score=115.32 Aligned_cols=165 Identities=10% Similarity=-0.029 Sum_probs=150.8
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENL 324 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~ 324 (631)
...|+.+-.+|.+.|++++|+..|++..+..+-+..++..+..+|.+.|++++|++.|++.++.. +-+...|+.+..+|
T Consensus 9 a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~~l 87 (723)
T 4gyw_A 9 ADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTL 87 (723)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 67899999999999999999999999999988889999999999999999999999999999875 55788999999999
Q ss_pred HcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 036072 325 GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIK 404 (631)
Q Consensus 325 ~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ 404 (631)
...|++++|.+.|++..+..+.+...|+.+...|.+.|++++|++.|++..+.. .-+...|..+..++...|++++|.+
T Consensus 88 ~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~A~~ 166 (723)
T 4gyw_A 88 KEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTDYDE 166 (723)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTTHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHHHHH
Confidence 999999999999999887666788999999999999999999999999999863 2257889999999999999999999
Q ss_pred HHHHHHH
Q 036072 405 LFEVMKA 411 (631)
Q Consensus 405 ll~~m~~ 411 (631)
.+++..+
T Consensus 167 ~~~kal~ 173 (723)
T 4gyw_A 167 RMKKLVS 173 (723)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 8887754
|
| >4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A* | Back alignment and structure |
|---|
Probab=99.02 E-value=1.3e-08 Score=114.32 Aligned_cols=166 Identities=14% Similarity=0.033 Sum_probs=146.3
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036072 432 NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMK 511 (631)
Q Consensus 432 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~ 511 (631)
++.+|+.|...|.+.|++++|++.|++..+.... +...|+.+..+|.+.|++++|++.|++.++.. +-+...|..+..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~-~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~nLg~ 85 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVFPE-FAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGN 85 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 4567889999999999999999999999886433 57899999999999999999999999999864 335789999999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 036072 512 SYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYV 591 (631)
Q Consensus 512 ~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 591 (631)
+|...|++++|++.|++.++.... +...|+.+..+|...|++++|++.|++.++.. +-+...|..+..++...|++++
T Consensus 86 ~l~~~g~~~~A~~~~~kAl~l~P~-~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~~~ 163 (723)
T 4gyw_A 86 TLKEMQDVQGALQCYTRAIQINPA-FADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDWTD 163 (723)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCCTT
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccHHH
Confidence 999999999999999999986543 68899999999999999999999999999864 3457789999999999999999
Q ss_pred HHHHHHHHHh
Q 036072 592 LDELAQKMRF 601 (631)
Q Consensus 592 A~~l~~~m~~ 601 (631)
|.+.+++..+
T Consensus 164 A~~~~~kal~ 173 (723)
T 4gyw_A 164 YDERMKKLVS 173 (723)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998887643
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=99.00 E-value=6.6e-09 Score=102.16 Aligned_cols=205 Identities=19% Similarity=0.171 Sum_probs=137.9
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHH
Q 036072 383 VVAHNIMLEGLLKIGKRSDAIKLFEVMKAK------GPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLL 456 (631)
Q Consensus 383 ~~ty~~li~~~~~~g~~~~A~~ll~~m~~~------g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 456 (631)
..++..+...|...|++++|+..++++.+. +-.|. ...++..+...|...|++++|...|
T Consensus 43 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--------------~~~~~~~l~~~~~~~g~~~~A~~~~ 108 (283)
T 3edt_B 43 ATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPA--------------VAATLNNLAVLYGKRGKYKEAEPLC 108 (283)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHH--------------HHHHHHHHHHHHHTTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchH--------------HHHHHHHHHHHHHHhccHHHHHHHH
Confidence 456677777777888888888888777653 11121 2345777888999999999999999
Q ss_pred HHHHHc-----CC--CCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC------CCCC-CHHHHHHHHHHHHHcCCHHHH
Q 036072 457 KEMEER-----GC--PPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRS------GFKP-TIHTYNMIMKSYFQTGNYEMG 522 (631)
Q Consensus 457 ~~m~~~-----g~--~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~------g~~p-~~~t~~~Li~~~~~~g~~~~A 522 (631)
.+..+. +. +....++..+...|...|++++|..+++++.+. +..| ...++..+..+|...|++++|
T Consensus 109 ~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 188 (283)
T 3edt_B 109 KRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKTKNNLASCYLKQGKYQDA 188 (283)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCCHHHH
Confidence 988754 11 223567888889999999999999999998864 1122 356788999999999999999
Q ss_pred HHHHHHHHHc-------CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHH---HC-C-C-CCCHHHHHHHHHHHHhcCC
Q 036072 523 RKVWDEMIRR-------GCCPD-DNSYTVLIGGLISQDRSGEAYKYLEEML---EK-G-M-KAPVLDYNKFAADLSRAGR 588 (631)
Q Consensus 523 ~~~~~~m~~~-------g~~p~-~~t~~~li~~~~~~g~~~~A~~ll~~m~---~~-g-~-~p~~~~~~~li~~~~~~g~ 588 (631)
..+++++.+. ...+. ...|..+...+...+....+.. +.++. +. + . ......+..+..+|...|+
T Consensus 189 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~ 267 (283)
T 3edt_B 189 ETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAP-YGEYGSWYKACKVDSPTVNTTLRSLGALYRRQGK 267 (283)
T ss_dssp HHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC-------------CCCCCCHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHH-HHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcCC
Confidence 9999988863 11222 2233333333333333222222 22221 11 1 1 1124468889999999999
Q ss_pred HHHHHHHHHHHHhc
Q 036072 589 SYVLDELAQKMRFS 602 (631)
Q Consensus 589 ~~~A~~l~~~m~~~ 602 (631)
+++|.+++++..+.
T Consensus 268 ~~~A~~~~~~al~~ 281 (283)
T 3edt_B 268 LEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHh
Confidence 99999999987643
|
| >3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A | Back alignment and structure |
|---|
Probab=98.99 E-value=5.5e-09 Score=102.71 Aligned_cols=135 Identities=16% Similarity=0.052 Sum_probs=88.9
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHhcc--------cCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc------C
Q 036072 313 GVDTINCLLENLGRSKLPKEAQLLFDKLKHR--------FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK------G 378 (631)
Q Consensus 313 ~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~--------~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~------g 378 (631)
...++..+...|...|++++|...+++..+. .+....++..+...|...|++++|...|++..+. .
T Consensus 42 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~ 121 (283)
T 3edt_B 42 VATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGK 121 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCC
Confidence 3445555666666666666666666654321 1223446777777777777777777777776653 1
Q ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc------CCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHH
Q 036072 379 F-KPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK------GPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDI 451 (631)
Q Consensus 379 ~-~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~------g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~ 451 (631)
- .....++..+...|...|++++|.+.++++.+. +..|+ ...++..+...|...|++++
T Consensus 122 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~--------------~~~~~~~la~~~~~~g~~~~ 187 (283)
T 3edt_B 122 FHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPN--------------VAKTKNNLASCYLKQGKYQD 187 (283)
T ss_dssp TCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHH--------------HHHHHHHHHHHHHHHTCHHH
T ss_pred CChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHH--------------HHHHHHHHHHHHHHcCCHHH
Confidence 1 123556777888888888888888888887653 11121 23456677888888999999
Q ss_pred HHHHHHHHHH
Q 036072 452 VYDLLKEMEE 461 (631)
Q Consensus 452 A~~l~~~m~~ 461 (631)
|..++++..+
T Consensus 188 A~~~~~~~l~ 197 (283)
T 3edt_B 188 AETLYKEILT 197 (283)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9999988765
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.96 E-value=7.1e-08 Score=92.28 Aligned_cols=168 Identities=9% Similarity=-0.055 Sum_probs=140.2
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036072 432 NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMK 511 (631)
Q Consensus 432 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~ 511 (631)
++..+......+...|++++|...|+...+....++...+..+..++...|++++|+..|++..+.. +-+...+..+..
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 84 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKSA 84 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHHH
Confidence 4456677788899999999999999999987654677888889999999999999999999999864 235678899999
Q ss_pred HHHHcCCHHHHHHHHHHHHHcCCCCCH-------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCC---HHHHHHHHH
Q 036072 512 SYFQTGNYEMGRKVWDEMIRRGCCPDD-------NSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAP---VLDYNKFAA 581 (631)
Q Consensus 512 ~~~~~g~~~~A~~~~~~m~~~g~~p~~-------~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~---~~~~~~li~ 581 (631)
+|...|++++|...+++..+.... +. ..|..+...+...|++++|.+.|+++++. .|+ ...|..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKAVPG-NATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 999999999999999999986432 44 55788888889999999999999999886 454 466888888
Q ss_pred HHHhcCCH---------------------------HHHHHHHHHHHhcC
Q 036072 582 DLSRAGRS---------------------------YVLDELAQKMRFSG 603 (631)
Q Consensus 582 ~~~~~g~~---------------------------~~A~~l~~~m~~~g 603 (631)
++...|+. ++|...+++..+..
T Consensus 162 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 162 LFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 88888887 78888888876654
|
| >4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=98.96 E-value=7.1e-08 Score=92.26 Aligned_cols=154 Identities=11% Similarity=-0.050 Sum_probs=124.3
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 036072 243 HNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLL 321 (631)
Q Consensus 243 p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~-~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll 321 (631)
.|+..|......+...|++++|...|++..+..+ .+...+..+..++...|++++|++.|+...+.. +.+..++..+.
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 83 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN-YNLANAYIGKS 83 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CSHHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC-cchHHHHHHHH
Confidence 3567788888888889999999999999888777 677777778888999999999999999988875 44667788888
Q ss_pred HHHHcCCChHHHHHHHHHHhcccCCCh-------hhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC---HHHHHHHHH
Q 036072 322 ENLGRSKLPKEAQLLFDKLKHRFTPNL-------TTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD---VVAHNIMLE 391 (631)
Q Consensus 322 ~~~~~~g~~~~A~~l~~~m~~~~~p~~-------~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~---~~ty~~li~ 391 (631)
.+|...|++++|...|++..+..+.+. ..|..+...+...|++++|.+.|++..+. .|+ ...|..+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 84 AAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDV--TSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS--SCHHHHHHHHHHHHH
T ss_pred HHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhc--CCCcccHHHHHHHHH
Confidence 889999999999999998877655566 55788888888889999999999988875 454 456777777
Q ss_pred HHHHcCCH
Q 036072 392 GLLKIGKR 399 (631)
Q Consensus 392 ~~~~~g~~ 399 (631)
+|...|+.
T Consensus 162 ~~~~~~~~ 169 (228)
T 4i17_A 162 LFYNNGAD 169 (228)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766665
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.93 E-value=5.4e-08 Score=83.51 Aligned_cols=129 Identities=10% Similarity=0.076 Sum_probs=72.8
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc
Q 036072 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGR 326 (631)
Q Consensus 247 ~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~ 326 (631)
.|..+...+...|++++|..+++++.+.+..+...+..+...+...|++++|...|+.+.+.. +.+...+..+...+..
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcCCcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHHH
Confidence 345555666666666666666666665555455555556666666666666666666655543 3344455555555555
Q ss_pred CCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036072 327 SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMID 376 (631)
Q Consensus 327 ~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~ 376 (631)
.|++++|..+++++.+..+.+..++..+...+.+.|++++|...++++.+
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 55555555555555444334444555555555555555555555555544
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.89 E-value=6.6e-08 Score=96.74 Aligned_cols=211 Identities=9% Similarity=-0.064 Sum_probs=133.3
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CcHHHHHHHHHHHhhcCHHHHHHHHH
Q 036072 363 NLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS-PNVRSYTIMIWKFCKQNAAVYTCLIT 441 (631)
Q Consensus 363 ~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~-p~~~~~~~li~~~~~~~~~~~~~li~ 441 (631)
++++|...|++. ...|...|++++|.+.|.+..+.... -+... ...+|+.+..
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~-----------~a~~~~~lg~ 85 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDE-----------AGNTYVEAYK 85 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHH-----------HHHHHHHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHH-----------HHHHHHHHHH
Confidence 366666666554 23455667777777766665442100 00000 1234556666
Q ss_pred HHhccCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHhc-CChhHHHHHHHHHHHCC----CCCC-HHHHHHHH
Q 036072 442 GFGNRRRMDIVYDLLKEMEER----GCPP-DGLTYNALIKLMKIQ-KMPDEAVRIYKEMVRSG----FKPT-IHTYNMIM 510 (631)
Q Consensus 442 ~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~li~~~~~~-g~~~~A~~l~~~m~~~g----~~p~-~~t~~~Li 510 (631)
.|.+.|++++|...+++..+. |-.. -..+++.+..+|... |++++|+..|++..+.. -... ..+++.+.
T Consensus 86 ~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg 165 (292)
T 1qqe_A 86 CFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCA 165 (292)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHH
Confidence 777777777777777665432 1100 134677788888885 99999999998887631 1111 35688889
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCCH------HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCH------HHHHH
Q 036072 511 KSYFQTGNYEMGRKVWDEMIRRGCCPDD------NSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPV------LDYNK 578 (631)
Q Consensus 511 ~~~~~~g~~~~A~~~~~~m~~~g~~p~~------~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~------~~~~~ 578 (631)
..|...|++++|...|++..+....... ..|..+..++...|++++|...+++..+. .|+. ..+..
T Consensus 166 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l--~p~~~~~~~~~~l~~ 243 (292)
T 1qqe_A 166 DLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSE--DPNFADSRESNFLKS 243 (292)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC-----------HHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCCCcHHHHHHHH
Confidence 9999999999999999999876433221 25677778888999999999999988763 2321 12445
Q ss_pred HHHHHH--hcCCHHHHHHHHHHHHh
Q 036072 579 FAADLS--RAGRSYVLDELAQKMRF 601 (631)
Q Consensus 579 li~~~~--~~g~~~~A~~l~~~m~~ 601 (631)
++.++. ..+++++|.+.++++..
T Consensus 244 l~~~~~~~~~~~~~~A~~~~~~~~~ 268 (292)
T 1qqe_A 244 LIDAVNEGDSEQLSEHCKEFDNFMR 268 (292)
T ss_dssp HHHHHHTTCTTTHHHHHHHHTTSSC
T ss_pred HHHHHHcCCHHHHHHHHHHhccCCc
Confidence 566664 45667788877766643
|
| >4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A | Back alignment and structure |
|---|
Probab=98.87 E-value=7.1e-06 Score=91.19 Aligned_cols=364 Identities=7% Similarity=-0.039 Sum_probs=241.2
Q ss_pred HHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccC---HHHHHHHHHHH
Q 036072 229 FRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKE---RKKAVAIFELM 305 (631)
Q Consensus 229 ~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~---~~~A~~v~~~m 305 (631)
..+-..+.+.+ -|..+|..++..+.+.+.++.+..+|+.+...-+.....|...+..-.+.++ ++.+.++|+..
T Consensus 53 ~~lE~~l~~np---~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfeRa 129 (679)
T 4e6h_A 53 GKLNDMIEEQP---TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDRFPLMANIWCMRLSLEFDKMEELDAAVIEPVLARC 129 (679)
T ss_dssp HHHHHHHHHCT---TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTC--CCCHHHHHHHHHHH
T ss_pred HHHHHHHHHCc---CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHhhCCcchHHHHHHHHHHH
Confidence 34444454443 4899999999999999999999999999999988889999999999888898 99999999999
Q ss_pred HhCC-CCcCHHHHHHHHHHHHcCCCh--------HHHHHHHHHHhc--cc-CC-ChhhHHHHHHHHH---------hcCC
Q 036072 306 NKYK-FKAGVDTINCLLENLGRSKLP--------KEAQLLFDKLKH--RF-TP-NLTTYTVLLGGWC---------RVKN 363 (631)
Q Consensus 306 ~~~g-~~~~~~~~~~Ll~~~~~~g~~--------~~A~~l~~~m~~--~~-~p-~~~~y~~Li~~~~---------~~g~ 363 (631)
.... ..|++..|...+....+.++. +.+.++|+.... +. .+ +...|...+.... ..++
T Consensus 130 l~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~~eeq~~ 209 (679)
T 4e6h_A 130 LSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNKFEEQQR 209 (679)
T ss_dssp TCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSHHHHHHH
T ss_pred HHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCcHHHHhH
Confidence 9874 248898998888766655543 334577777554 23 33 4568888887654 3445
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-------------CHHHHHHHHHHHHHc--CCC---CcHH------
Q 036072 364 LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIG-------------KRSDAIKLFEVMKAK--GPS---PNVR------ 419 (631)
Q Consensus 364 ~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g-------------~~~~A~~ll~~m~~~--g~~---p~~~------ 419 (631)
++.+..+|+.........-..+|......-...+ +++.|...+.++... ++. |...
T Consensus 210 ~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~~~~~~~ 289 (679)
T 4e6h_A 210 VQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITLNQATES 289 (679)
T ss_dssp HHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSSTTCCTT
T ss_pred HHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhccccccccchhc
Confidence 7888999999886322222334433332221111 123334444443221 111 1000
Q ss_pred ---HHHHHHHHHhhcCHHHHHHHHHHHhccC-------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHH-
Q 036072 420 ---SYTIMIWKFCKQNAAVYTCLITGFGNRR-------RMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAV- 488 (631)
Q Consensus 420 ---~~~~li~~~~~~~~~~~~~li~~~~~~g-------~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~- 488 (631)
.+... -......|...+..--..+ ..+.+..+|++.... ++-....|...+.-+...|+.++|.
T Consensus 290 ~~p~~~~~----~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a~r 364 (679)
T 4e6h_A 290 NLPKPNEY----DVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTVIT 364 (679)
T ss_dssp TSCCTTCC----CHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTHHH
T ss_pred cCCCCchh----HHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHHHH
Confidence 00000 0001133444444433332 134566778887765 3447788888888888889999997
Q ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC---------CCCC------------HHHHHHHHHH
Q 036072 489 RIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG---------CCPD------------DNSYTVLIGG 547 (631)
Q Consensus 489 ~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g---------~~p~------------~~t~~~li~~ 547 (631)
++|++.... ++.+...+-.++......|++++|.++|+.+++.. -.|+ ..+|..++..
T Consensus 365 ~il~rAi~~-~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~ 443 (679)
T 4e6h_A 365 KYLKLGQQC-IPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNT 443 (679)
T ss_dssp HHHHHHHHH-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHh-CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHH
Confidence 999999874 34566777888888999999999999999988641 0132 3468888888
Q ss_pred HHHcCCHHHHHHHHHHHHHC-CCCCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHhc
Q 036072 548 LISQDRSGEAYKYLEEMLEK-GMKAPVLDYNKFAADLSRAG-RSYVLDELAQKMRFS 602 (631)
Q Consensus 548 ~~~~g~~~~A~~ll~~m~~~-g~~p~~~~~~~li~~~~~~g-~~~~A~~l~~~m~~~ 602 (631)
..+.|..+.|..+|.++.+. + ......|...+..-.+.| +.+.|.++|++..+.
T Consensus 444 erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~ 499 (679)
T 4e6h_A 444 MKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY 499 (679)
T ss_dssp HHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH
Confidence 88899999999999999886 3 223344544444444554 489999999887654
|
| >2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A | Back alignment and structure |
|---|
Probab=98.84 E-value=1.6e-07 Score=80.54 Aligned_cols=131 Identities=12% Similarity=0.079 Sum_probs=115.8
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHH
Q 036072 280 ETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWC 359 (631)
Q Consensus 280 ~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~ 359 (631)
..+..+...+...|++++|..+|+.+.+.. +.+...+..+...+...|++++|..+++++....+.+...+..+...+.
T Consensus 2 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 2 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHH
Confidence 357778889999999999999999998865 4578888889999999999999999999988766667888999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036072 360 RVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412 (631)
Q Consensus 360 ~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~ 412 (631)
..|++++|.++++++.+.. ..+...+..+...+.+.|++++|...++++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 9999999999999998863 346778889999999999999999999998764
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.84 E-value=8.1e-07 Score=88.22 Aligned_cols=181 Identities=7% Similarity=0.013 Sum_probs=115.9
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhcc
Q 036072 367 AGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNR 446 (631)
Q Consensus 367 A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~ 446 (631)
|+..|+++.+.+ .++..++..+..++...|++++|++++......+..++ +...+..++..+.+.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~--------------~lea~~l~vqi~L~~ 149 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEG--------------TTELLLLAIEVALLN 149 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTT--------------HHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcC--------------cHHHHHHHHHHHHHC
Confidence 556666665544 34555555666777777777777777777655443212 223344556777777
Q ss_pred CCHHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHH--hcC--ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 036072 447 RRMDIVYDLLKEMEERGCPP-----DGLTYNALIKLMK--IQK--MPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517 (631)
Q Consensus 447 g~~~~A~~l~~~m~~~g~~p-----~~~t~~~li~~~~--~~g--~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g 517 (631)
|+.+.|.+.+++|.+. .| +..+...|+.++. ..| +..+|..+|+++.+. .|+..+...++.++...|
T Consensus 150 ~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g 225 (310)
T 3mv2_B 150 NNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQR 225 (310)
T ss_dssp TCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcC
Confidence 8888888888887664 34 2455555555532 223 788889999888664 355444445555788889
Q ss_pred CHHHHHHHHHHHHHcC-----C----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 036072 518 NYEMGRKVWDEMIRRG-----C----CPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568 (631)
Q Consensus 518 ~~~~A~~~~~~m~~~g-----~----~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g 568 (631)
++++|.+.++.+.+.- . .-|..++..+|......|+ +|.++++++.+..
T Consensus 226 ~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 226 NIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp CHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 9999998888765431 0 2256666566666666676 7888888888753
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.75 E-value=4.3e-07 Score=88.81 Aligned_cols=169 Identities=9% Similarity=-0.017 Sum_probs=138.1
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhCCC--CcCHHHHH
Q 036072 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS---METFKIAMNAFAAAKERKKAVAIFELMNKYKF--KAGVDTIN 318 (631)
Q Consensus 244 ~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~---~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~--~~~~~~~~ 318 (631)
+...+-.+...+.+.|++++|...|+++.+..+.+ ..++..+..++...|++++|+..|+...+... +.....+.
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~ 93 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEY 93 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHH
Confidence 46677778888889999999999999999887755 77899999999999999999999999988631 12355677
Q ss_pred HHHHHHHc--------CCChHHHHHHHHHHhcccCCChhhH-----------------HHHHHHHHhcCCHHHHHHHHHH
Q 036072 319 CLLENLGR--------SKLPKEAQLLFDKLKHRFTPNLTTY-----------------TVLLGGWCRVKNLMEAGRVWNE 373 (631)
Q Consensus 319 ~Ll~~~~~--------~g~~~~A~~l~~~m~~~~~p~~~~y-----------------~~Li~~~~~~g~~~~A~~l~~~ 373 (631)
.+..++.. .|++++|...|+++.+..+.+.... ..+...|.+.|++++|...|++
T Consensus 94 ~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 173 (261)
T 3qky_A 94 ERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRYPNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVTYEA 173 (261)
T ss_dssp HHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHhcccccccchhHHHHHHHHHHHHHHCcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 78888888 9999999999999887665555555 5568889999999999999999
Q ss_pred HHHcCCCC--CHHHHHHHHHHHHHc----------CCHHHHHHHHHHHHHc
Q 036072 374 MIDKGFKP--DVVAHNIMLEGLLKI----------GKRSDAIKLFEVMKAK 412 (631)
Q Consensus 374 m~~~g~~p--~~~ty~~li~~~~~~----------g~~~~A~~ll~~m~~~ 412 (631)
+.+..... ....+..+..+|... |++++|...|+.+.+.
T Consensus 174 ~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 174 VFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 98863221 245677777888766 8899999999999875
|
| >3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus} | Back alignment and structure |
|---|
Probab=98.73 E-value=1.4e-06 Score=85.03 Aligned_cols=101 Identities=12% Similarity=0.012 Sum_probs=66.4
Q ss_pred cCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCC---hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CCC-HHHH
Q 036072 312 AGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPN---LTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGF-KPD-VVAH 386 (631)
Q Consensus 312 ~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~---~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~-~p~-~~ty 386 (631)
.+...+..+...+.+.|++++|...|+++.+..+.+ ...+..+..+|.+.|++++|...|+...+... .|. ...+
T Consensus 13 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~ 92 (261)
T 3qky_A 13 SSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAE 92 (261)
T ss_dssp SSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHH
Confidence 345555566666677777777777777776654444 55667777777777777777777777776421 111 3455
Q ss_pred HHHHHHHHH--------cCCHHHHHHHHHHHHHc
Q 036072 387 NIMLEGLLK--------IGKRSDAIKLFEVMKAK 412 (631)
Q Consensus 387 ~~li~~~~~--------~g~~~~A~~ll~~m~~~ 412 (631)
..+..++.. .|++++|+..|+++.+.
T Consensus 93 ~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 93 YERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 566666666 77777777777777664
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.72 E-value=4.2e-07 Score=85.80 Aligned_cols=172 Identities=13% Similarity=0.023 Sum_probs=132.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHH----------------HHHHHHHccCHHHHHHHHHHHHhC
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKI----------------AMNAFAAAKERKKAVAIFELMNKY 308 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~----------------li~~~~~~g~~~~A~~v~~~m~~~ 308 (631)
...+-.....+...|++++|+..|++..+..+-+...+.. +..++...|++++|+..|+...+.
T Consensus 4 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 83 (208)
T 3urz_A 4 VDEMLQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK 83 (208)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 3344445566778999999999999998887766677777 899999999999999999999987
Q ss_pred CCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCC--HHHHHHHHHHHHHcCCCCCHHHH
Q 036072 309 KFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKN--LMEAGRVWNEMIDKGFKPDVVAH 386 (631)
Q Consensus 309 g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~--~~~A~~l~~~m~~~g~~p~~~ty 386 (631)
. +-+...+..+..+|...|++++|...|++..+..+.+..+|..+...|...|+ .+.+...++.... ..|....+
T Consensus 84 ~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~a~ 160 (208)
T 3urz_A 84 A-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSS--PTKMQYAR 160 (208)
T ss_dssp C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---C--CCHHHHHH
T ss_pred C-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhC--CCchhHHH
Confidence 5 56788999999999999999999999999988777788899999988876654 4455555555432 22223334
Q ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHH
Q 036072 387 NIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSY 421 (631)
Q Consensus 387 ~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~ 421 (631)
...-.++...|++++|...|++..+. .|+....
T Consensus 161 ~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~~ 193 (208)
T 3urz_A 161 YRDGLSKLFTTRYEKARNSLQKVILR--FPSTEAQ 193 (208)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHHH
Confidence 44555667789999999999999874 5665433
|
| >1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.72 E-value=5.1e-07 Score=90.18 Aligned_cols=166 Identities=11% Similarity=0.008 Sum_probs=130.2
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCC--CHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCC---Cc--CH
Q 036072 246 RTYNSMMSILGRARQFETMVSMLEEMGEK----GLL--SMETFKIAMNAFAAAKERKKAVAIFELMNKYKF---KA--GV 314 (631)
Q Consensus 246 ~~y~~li~~~~~~g~~~~A~~l~~~m~~~----g~~--~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~---~~--~~ 314 (631)
..|+.....|...|++++|...|++..+. |-+ ...+|+.+..+|...|++++|+..|+...+... .+ -.
T Consensus 38 ~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a 117 (292)
T 1qqe_A 38 DLCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGA 117 (292)
T ss_dssp HHHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 34555677788899999999999987654 222 245899999999999999999999988876421 11 14
Q ss_pred HHHHHHHHHHHcC-CChHHHHHHHHHHhcccCCC------hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----
Q 036072 315 DTINCLLENLGRS-KLPKEAQLLFDKLKHRFTPN------LTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDV---- 383 (631)
Q Consensus 315 ~~~~~Ll~~~~~~-g~~~~A~~l~~~m~~~~~p~------~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~---- 383 (631)
.+++.+...|... |++++|...|++..+-.+.+ ..+|+.+...+.+.|++++|+..|++..+.......
T Consensus 118 ~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~ 197 (292)
T 1qqe_A 118 NFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWS 197 (292)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGG
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHH
Confidence 5788899999996 99999999999875432111 357889999999999999999999999986433222
Q ss_pred --HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 384 --VAHNIMLEGLLKIGKRSDAIKLFEVMKA 411 (631)
Q Consensus 384 --~ty~~li~~~~~~g~~~~A~~ll~~m~~ 411 (631)
..|..+..++...|++++|...|++..+
T Consensus 198 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 198 LKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 2567788889999999999999998876
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.65 E-value=1.7e-06 Score=82.67 Aligned_cols=168 Identities=11% Similarity=0.045 Sum_probs=128.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCC-cCH-HHHHH
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS---METFKIAMNAFAAAKERKKAVAIFELMNKYKFK-AGV-DTINC 319 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~---~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~-~~~-~~~~~ 319 (631)
...+..+...+.+.|++++|+..|+++.+..+.+ ..++..+..++...|++++|+..|+.+.+.... +.. ..+..
T Consensus 4 ~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~ 83 (225)
T 2yhc_A 4 PNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYM 83 (225)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHH
Confidence 4556667777888999999999999998876532 467888889999999999999999999876421 111 23444
Q ss_pred HHHHHH------------------cCCChHHHHHHHHHHhcccCCChhhH-----------------HHHHHHHHhcCCH
Q 036072 320 LLENLG------------------RSKLPKEAQLLFDKLKHRFTPNLTTY-----------------TVLLGGWCRVKNL 364 (631)
Q Consensus 320 Ll~~~~------------------~~g~~~~A~~l~~~m~~~~~p~~~~y-----------------~~Li~~~~~~g~~ 364 (631)
+..++. ..|+.++|...|+++.+..+-+...+ ..+...|.+.|++
T Consensus 84 ~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~ 163 (225)
T 2yhc_A 84 RGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAW 163 (225)
T ss_dssp HHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 444443 35789999999999987766555444 2456678899999
Q ss_pred HHHHHHHHHHHHcCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC
Q 036072 365 MEAGRVWNEMIDKGFKPD----VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGP 414 (631)
Q Consensus 365 ~~A~~l~~~m~~~g~~p~----~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~ 414 (631)
++|...|+++.+. .|+ ...+..+..++.+.|+.++|.+.++.+...+.
T Consensus 164 ~~A~~~~~~~l~~--~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~ 215 (225)
T 2yhc_A 164 VAVVNRVEGMLRD--YPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSS 215 (225)
T ss_dssp HHHHHHHHHHHHH--STTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCS
T ss_pred HHHHHHHHHHHHH--CcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCC
Confidence 9999999999986 233 25688889999999999999999999887643
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.65 E-value=3.5e-06 Score=79.74 Aligned_cols=173 Identities=9% Similarity=-0.005 Sum_probs=139.5
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC----ChhHHHHHHHHHHHCCCCCCHHHHH
Q 036072 432 NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQK----MPDEAVRIYKEMVRSGFKPTIHTYN 507 (631)
Q Consensus 432 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g----~~~~A~~l~~~m~~~g~~p~~~t~~ 507 (631)
++.++..|...|...+++++|.+.|++..+.| +...+..|-..|.. + +.++|.++|++..+.| +...+.
T Consensus 17 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~g---~~~a~~ 89 (212)
T 3rjv_A 17 DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEAG---SKSGEI 89 (212)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHTT---CHHHHH
T ss_pred CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHCC---CHHHHH
Confidence 55566677788888999999999999998875 56777777777777 6 8999999999998876 567788
Q ss_pred HHHHHHHH----cCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCCCHHHHHH
Q 036072 508 MIMKSYFQ----TGNYEMGRKVWDEMIRRGCC-PDDNSYTVLIGGLIS----QDRSGEAYKYLEEMLEKGMKAPVLDYNK 578 (631)
Q Consensus 508 ~Li~~~~~----~g~~~~A~~~~~~m~~~g~~-p~~~t~~~li~~~~~----~g~~~~A~~ll~~m~~~g~~p~~~~~~~ 578 (631)
.|...|.. .+++++|.+.|++..+.|.. -+...+..|...|.. .++.++|..+|++..+.+ .+...+..
T Consensus 90 ~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~--~~~~a~~~ 167 (212)
T 3rjv_A 90 VLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSLS--RTGYAEYW 167 (212)
T ss_dssp HHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHTS--CTTHHHHH
T ss_pred HHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHcC--CCHHHHHH
Confidence 88888877 88999999999999987632 027788888888888 889999999999999872 24446777
Q ss_pred HHHHHHhc-C-----CHHHHHHHHHHHHhcCCCchHHHHHH
Q 036072 579 FAADLSRA-G-----RSYVLDELAQKMRFSGKFEVSNVLAR 613 (631)
Q Consensus 579 li~~~~~~-g-----~~~~A~~l~~~m~~~g~~~~~~~l~~ 613 (631)
|...|... | +.++|.+++++..+.|.......+..
T Consensus 168 Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~~~A~~~l~~ 208 (212)
T 3rjv_A 168 AGMMFQQGEKGFIEPNKQKALHWLNVSCLEGFDTGCEEFDR 208 (212)
T ss_dssp HHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 88887654 3 89999999999999987655555443
|
| >3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B | Back alignment and structure |
|---|
Probab=98.64 E-value=2.7e-06 Score=84.45 Aligned_cols=191 Identities=13% Similarity=0.074 Sum_probs=141.9
Q ss_pred HHHHHHhhccCchhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC--CCHHHHHHHHHHHHH
Q 036072 214 VVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGL--LSMETFKIAMNAFAA 291 (631)
Q Consensus 214 ~~~vl~~~~~~~~~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~--~~~~~~~~li~~~~~ 291 (631)
...++..+-... |...|+.+.... .++..++..+..++...|++++|++++.+....+. -+.+.+..++..+.+
T Consensus 73 a~~~la~~~~~~--a~~~l~~l~~~~--~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~ 148 (310)
T 3mv2_B 73 VLDLYVQFLDTK--NIEELENLLKDK--QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALL 148 (310)
T ss_dssp HHHHHHHHHTTT--CCHHHHHTTTTS--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccc--HHHHHHHHHhcC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHH
Confidence 445555554332 677776554332 45566677888999999999999999999887775 577899999999999
Q ss_pred ccCHHHHHHHHHHHHhCCCCc-----CHHHHHHHHHHHH--c--CCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcC
Q 036072 292 AKERKKAVAIFELMNKYKFKA-----GVDTINCLLENLG--R--SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVK 362 (631)
Q Consensus 292 ~g~~~~A~~v~~~m~~~g~~~-----~~~~~~~Ll~~~~--~--~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g 362 (631)
.|+.+.|.+.++.|.+. .| +..+...|+.+++ . .++..+|..+|+++.+.. |+..+-..++.++.+.|
T Consensus 149 ~~r~d~A~k~l~~~~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~~-p~~~~~~lLln~~~~~g 225 (310)
T 3mv2_B 149 NNNVSTASTIFDNYTNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQTF-PTWKTQLGLLNLHLQQR 225 (310)
T ss_dssp TTCHHHHHHHHHHHHHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTTS-CSHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhC-CCcccHHHHHHHHHHcC
Confidence 99999999999999876 45 3566666666633 2 348999999999997764 34333344555899999
Q ss_pred CHHHHHHHHHHHHHc-----CC----CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 036072 363 NLMEAGRVWNEMIDK-----GF----KPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413 (631)
Q Consensus 363 ~~~~A~~l~~~m~~~-----g~----~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g 413 (631)
++++|.+.++.+.+. +. .-|..+...+|......|+ +|.+++.++.+..
T Consensus 226 ~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~~ 283 (310)
T 3mv2_B 226 NIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKLD 283 (310)
T ss_dssp CHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHHhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHhC
Confidence 999999999976653 11 2356666567767777787 8899999998853
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.63 E-value=3.5e-07 Score=83.77 Aligned_cols=163 Identities=8% Similarity=0.005 Sum_probs=130.2
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHH-HH
Q 036072 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLEN-LG 325 (631)
Q Consensus 247 ~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~-~~ 325 (631)
.+..+...+.+.|++++|...|++..+..+.+...+..+...+...|++++|+..|+...+.. |+...+..+... +.
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~--p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPLEY--QDNSYKSLIAKLELH 85 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG--CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc--CChHHHHHHHHHHHH
Confidence 345566778899999999999999888877788999999999999999999999999987764 355444332222 22
Q ss_pred cCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHH
Q 036072 326 RSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKP-DVVAHNIMLEGLLKIGKRSDAIK 404 (631)
Q Consensus 326 ~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~ty~~li~~~~~~g~~~~A~~ 404 (631)
..+....|...|++..+..+.+...+..+...+...|++++|...|+++.+....+ +...+..+...+...|+.++|..
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 22333457888888877667788999999999999999999999999999864332 35688899999999999999999
Q ss_pred HHHHHHH
Q 036072 405 LFEVMKA 411 (631)
Q Consensus 405 ll~~m~~ 411 (631)
.|++...
T Consensus 166 ~y~~al~ 172 (176)
T 2r5s_A 166 KYRRQLY 172 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987654
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.63 E-value=3.4e-07 Score=102.92 Aligned_cols=157 Identities=12% Similarity=-0.019 Sum_probs=138.7
Q ss_pred HhcCChhHHHHHHHHHH--------HCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcC
Q 036072 256 GRARQFETMVSMLEEMG--------EKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS 327 (631)
Q Consensus 256 ~~~g~~~~A~~l~~~m~--------~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~ 327 (631)
...|++++|++.+++.. +..+.+...+..+..++...|++++|++.|+...+.. +.+...|..+..+|...
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~ 480 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAERV-GWRWRLVWYRAVAELLT 480 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH-CCCHHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC-cchHHHHHHHHHHHHHc
Confidence 67899999999999998 6666677899999999999999999999999999875 55788999999999999
Q ss_pred CChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 036072 328 KLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFE 407 (631)
Q Consensus 328 g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~ 407 (631)
|++++|...|++..+..+.+...|..+..+|.+.|++++ ++.|++..+.. .-+...|..+..++.+.|++++|++.|+
T Consensus 481 g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~ 558 (681)
T 2pzi_A 481 GDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAVRTLD 558 (681)
T ss_dssp TCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 999999999999987767788899999999999999999 99999998863 2367789999999999999999999999
Q ss_pred HHHHcCCCCc
Q 036072 408 VMKAKGPSPN 417 (631)
Q Consensus 408 ~m~~~g~~p~ 417 (631)
+..+. .|+
T Consensus 559 ~al~l--~P~ 566 (681)
T 2pzi_A 559 EVPPT--SRH 566 (681)
T ss_dssp TSCTT--STT
T ss_pred hhccc--Ccc
Confidence 88664 454
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.62 E-value=0.0001 Score=79.21 Aligned_cols=364 Identities=10% Similarity=-0.013 Sum_probs=202.0
Q ss_pred CHHHHHHHHHhhc-cCchhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHC-C--CCCHHHHHH
Q 036072 210 SHNLVVDVLERFR-HARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQ-FETMVSMLEEMGEK-G--LLSMETFKI 284 (631)
Q Consensus 210 ~~~~~~~vl~~~~-~~~~~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~-~~~A~~l~~~m~~~-g--~~~~~~~~~ 284 (631)
..+.+...+..+. .....+..+|+..... .|++..|...+....+.++ .+.+..+|+..... | ..+...|..
T Consensus 14 aR~vyer~l~~~P~~~~e~~~~iferal~~---~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~ 90 (493)
T 2uy1_A 14 PSAIMEHARRLYMSKDYRSLESLFGRCLKK---SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKE 90 (493)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHSTT---CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHH
T ss_pred HHHHHHHHHHHCCCCCHHHHHHHHHHHhcc---CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHH
Confidence 3555555666554 2334578888776542 3688888888888777663 45567777776653 3 346677777
Q ss_pred HHHHHH----HccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH-------------cCCChHHHHHHHHHHhcccC-C
Q 036072 285 AMNAFA----AAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG-------------RSKLPKEAQLLFDKLKHRFT-P 346 (631)
Q Consensus 285 li~~~~----~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~-------------~~g~~~~A~~l~~~m~~~~~-p 346 (631)
.+..+. .+++.+.+.++|+..+......-...|......-. ..+.+..|..+++.+....+ .
T Consensus 91 Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~ 170 (493)
T 2uy1_A 91 YIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGW 170 (493)
T ss_dssp HHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred HHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhc
Confidence 776654 35678888888888887432111122222111100 01123334444444432211 1
Q ss_pred ChhhHHHHHHHHHhcC-C------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHH
Q 036072 347 NLTTYTVLLGGWCRVK-N------LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVR 419 (631)
Q Consensus 347 ~~~~y~~Li~~~~~~g-~------~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~ 419 (631)
+...|...+..-...+ . .+.+..+|+++... ...+...|...+..+.+.|+.++|..+|++.... |...
T Consensus 171 s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~ 246 (493)
T 2uy1_A 171 SVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGM 246 (493)
T ss_dssp SHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSS
T ss_pred cHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcH
Confidence 3345655555432221 1 34466788888775 3445777877888888889999999999988876 4432
Q ss_pred HHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHH
Q 036072 420 SYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPP---DGLTYNALIKLMKIQKMPDEAVRIYKEMVR 496 (631)
Q Consensus 420 ~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p---~~~t~~~li~~~~~~g~~~~A~~l~~~m~~ 496 (631)
........+.+.. ..+..+...+.. +.. ...+..+ ....|...+....+.++.+.|..+|++. +
T Consensus 247 ~l~~~y~~~~e~~-~~~~~l~~~~~~----------~~~-~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~ 313 (493)
T 2uy1_A 247 FLSLYYGLVMDEE-AVYGDLKRKYSM----------GEA-ESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-G 313 (493)
T ss_dssp HHHHHHHHHTTCT-HHHHHHHHHTC---------------------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-T
T ss_pred HHHHHHHhhcchh-HHHHHHHHHHHh----------hcc-chhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-h
Confidence 2111110000000 011111111100 000 0000001 1244556666666677788888888887 3
Q ss_pred CCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHH
Q 036072 497 SGFKPTIHTYNMIMKSYFQ-TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLD 575 (631)
Q Consensus 497 ~g~~p~~~t~~~Li~~~~~-~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~ 575 (631)
.. ..+...|......-.. .++.+.|..+|+...+.-. -+...|...++.....|+.+.|..+|+++. .....
T Consensus 314 ~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~~-~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~l 386 (493)
T 2uy1_A 314 NE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKHP-DSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRM 386 (493)
T ss_dssp TS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHH
T ss_pred CC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHH
Confidence 21 1244444332222222 3368888888888876532 134556667777777888888888888862 24566
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 036072 576 YNKFAADLSRAGRSYVLDELAQKMR 600 (631)
Q Consensus 576 ~~~li~~~~~~g~~~~A~~l~~~m~ 600 (631)
|...+..-...|+.+.+.++++++.
T Consensus 387 w~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 387 WDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 7777777777788888888777665
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.60 E-value=1.2e-06 Score=96.24 Aligned_cols=132 Identities=7% Similarity=-0.090 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENL 324 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~ 324 (631)
...|..+...+.+.|++++|...|++..+..+.+..++..+..+|...|++++|++.|+...+.. +.+...+..+..+|
T Consensus 23 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~ 101 (568)
T 2vsy_A 23 FVAWLMLADAELGMGDTTAGEMAVQRGLALHPGHPEAVARLGRVRWTQQRHAEAAVLLQQASDAA-PEHPGIALWLGHAL 101 (568)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHTTSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 55566666666666666666666666666555556666666666666666666666666666543 33455666666666
Q ss_pred HcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhc---CCHHHHHHHHHHHHHc
Q 036072 325 GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRV---KNLMEAGRVWNEMIDK 377 (631)
Q Consensus 325 ~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~---g~~~~A~~l~~~m~~~ 377 (631)
.+.|++++|.+.|++..+..+.+...+..+...+... |++++|.+.+++..+.
T Consensus 102 ~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~ 157 (568)
T 2vsy_A 102 EDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQ 157 (568)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 6666666666666665554444555666666666666 6666666666666554
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.59 E-value=3.7e-05 Score=76.82 Aligned_cols=217 Identities=10% Similarity=0.004 Sum_probs=129.3
Q ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCC--ChHHHHHHHHHHhcccCCChhhHHHHHHHH----Hhc---CCHHH
Q 036072 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSK--LPKEAQLLFDKLKHRFTPNLTTYTVLLGGW----CRV---KNLME 366 (631)
Q Consensus 296 ~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g--~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~----~~~---g~~~~ 366 (631)
++|+++++.++... +-...+|+.--..+...+ .+++++..++.+....+.+..+|+.--..+ ... +++++
T Consensus 50 ~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~nPk~y~aW~~R~~iL~~~~~~l~~~~~~~~ 128 (306)
T 3dra_A 50 ERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDNEKNYQIWNYRQLIIGQIMELNNNDFDPYR 128 (306)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHCTTCCHHHHHHHHHHHHHHHHTTTCCCTHH
T ss_pred HHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHCcccHHHHHHHHHHHHHHHHhccccCCHHH
Confidence 45555555555543 334444554444444555 666666666666555455555555544444 333 56777
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH--HHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHh
Q 036072 367 AGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRS--DAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFG 444 (631)
Q Consensus 367 A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~--~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~ 444 (631)
++.+++.+.+.. .-|..+|+.-.-.+.+.|.++ ++++.++.+.+.... +..+|+.-...+.
T Consensus 129 EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~----------------N~sAW~~R~~ll~ 191 (306)
T 3dra_A 129 EFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK----------------NNSAWSHRFFLLF 191 (306)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT----------------CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC----------------CHHHHHHHHHHHH
Confidence 777777777653 336666666666666667666 777777777765332 2333333333333
Q ss_pred ccCC------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhH-HHHHHHHHHHCC--CCCCHHHHHHHHHHHHH
Q 036072 445 NRRR------MDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDE-AVRIYKEMVRSG--FKPTIHTYNMIMKSYFQ 515 (631)
Q Consensus 445 ~~g~------~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~-A~~l~~~m~~~g--~~p~~~t~~~Li~~~~~ 515 (631)
+.+. ++++++.++.+....+. |...|+.+-..+.+.|+... +..+..++.+.+ -..+...+..+..+|.+
T Consensus 192 ~l~~~~~~~~~~eEl~~~~~aI~~~p~-n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~ 270 (306)
T 3dra_A 192 SKKHLATDNTIDEELNYVKDKIVKCPQ-NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQ 270 (306)
T ss_dssp SSGGGCCHHHHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHH
T ss_pred hccccchhhhHHHHHHHHHHHHHhCCC-CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHc
Confidence 3343 67777887777776544 77777777777777776433 444555544322 13356677777777777
Q ss_pred cCCHHHHHHHHHHHHH
Q 036072 516 TGNYEMGRKVWDEMIR 531 (631)
Q Consensus 516 ~g~~~~A~~~~~~m~~ 531 (631)
.|+.++|.++++.+.+
T Consensus 271 ~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 271 QKKYNESRTVYDLLKS 286 (306)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHh
Confidence 7777777777777765
|
| >2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A | Back alignment and structure |
|---|
Probab=98.57 E-value=5.3e-06 Score=79.17 Aligned_cols=170 Identities=9% Similarity=-0.057 Sum_probs=127.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-C-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CCH-HHHHHH
Q 036072 434 AVYTCLITGFGNRRRMDIVYDLLKEMEERGCP-P-DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFK-PTI-HTYNMI 509 (631)
Q Consensus 434 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p-~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~-~t~~~L 509 (631)
..+..+...+.+.|++++|...|+.+.+.... | ....+..+..+|.+.|++++|+..|+++.+..-. +.. ..+..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 34555677788899999999999999876432 1 1357778889999999999999999999975311 121 244455
Q ss_pred HHHHHH------------------cCCHHHHHHHHHHHHHcCCCCCHHHH-----------------HHHHHHHHHcCCH
Q 036072 510 MKSYFQ------------------TGNYEMGRKVWDEMIRRGCCPDDNSY-----------------TVLIGGLISQDRS 554 (631)
Q Consensus 510 i~~~~~------------------~g~~~~A~~~~~~m~~~g~~p~~~t~-----------------~~li~~~~~~g~~ 554 (631)
..++.. .|++++|...|+++++.... +...+ ..+...|.+.|++
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~P~-~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~~~ 163 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGYPN-SQYTTDATKRLVFLKDRLAKYEYSVAEYYTERGAW 163 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHTTCTT-CTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCH
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHCcC-ChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCcH
Confidence 555554 57899999999999986322 22222 2345667889999
Q ss_pred HHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 036072 555 GEAYKYLEEMLEKGMKAP---VLDYNKFAADLSRAGRSYVLDELAQKMRFSGKF 605 (631)
Q Consensus 555 ~~A~~ll~~m~~~g~~p~---~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 605 (631)
++|...|+++++.. +.+ ...+..+..++.+.|+.++|.+.++++...+..
T Consensus 164 ~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~ 216 (225)
T 2yhc_A 164 VAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSN 216 (225)
T ss_dssp HHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSC
T ss_pred HHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCC
Confidence 99999999998863 112 246888999999999999999999999877654
|
| >3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp} | Back alignment and structure |
|---|
Probab=98.57 E-value=6.2e-06 Score=77.97 Aligned_cols=176 Identities=11% Similarity=0.068 Sum_probs=113.0
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhc
Q 036072 366 EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGN 445 (631)
Q Consensus 366 ~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~ 445 (631)
+|.+.|++..+.| +...+..+-..|...+++++|++.|+...+.| ++..+..|...|..
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g------------------~~~a~~~lg~~y~~ 62 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG------------------DGDALALLAQLKIR 62 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT------------------CHHHHHHHHHHTTS
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC------------------CHHHHHHHHHHHHc
Confidence 3455566655543 55566666666666677777777776665543 22334444555555
Q ss_pred cC----CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHh----cCChhHHHHHHHHHHHCCCC-CCHHHHHHHHHHHHH-
Q 036072 446 RR----RMDIVYDLLKEMEERGCPPDGLTYNALIKLMKI----QKMPDEAVRIYKEMVRSGFK-PTIHTYNMIMKSYFQ- 515 (631)
Q Consensus 446 ~g----~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~-p~~~t~~~Li~~~~~- 515 (631)
+ ++++|.++|++..+.| +...+..|-..|.. .+++++|+.+|++..+.|.. -+...+..|...|..
T Consensus 63 -~g~~~~~~~A~~~~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g 138 (212)
T 3rjv_A 63 -NPQQADYPQARQLAEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASG 138 (212)
T ss_dssp -STTSCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHT
T ss_pred -CCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcC
Confidence 4 6777777777776654 45566666666655 67778888888877766521 125667777777777
Q ss_pred ---cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-C-----CHHHHHHHHHHHHHCC
Q 036072 516 ---TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQ-D-----RSGEAYKYLEEMLEKG 568 (631)
Q Consensus 516 ---~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~-g-----~~~~A~~ll~~m~~~g 568 (631)
.+++++|...|++..+.+ .+...+..|...|... | +.++|..+|++..+.|
T Consensus 139 ~g~~~d~~~A~~~~~~A~~~~--~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 139 VHGPEDDVKASEYFKGSSSLS--RTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp SSSSCCHHHHHHHHHHHHHTS--CTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred CCCCCCHHHHHHHHHHHHHcC--CCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 677888888888877751 2444566666666543 2 7788888888887766
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.55 E-value=1.3e-06 Score=86.98 Aligned_cols=166 Identities=10% Similarity=-0.007 Sum_probs=140.0
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHH-HH
Q 036072 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCL-LE 322 (631)
Q Consensus 244 ~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~L-l~ 322 (631)
+...+..+...+.+.|++++|...|++..+..+-+...+..+...+...|++++|+..++.+... .|+....... ..
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--~p~~~~~~~~~~~ 193 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--DQDTRYQGLVAQI 193 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG--GCSHHHHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh--hcchHHHHHHHHH
Confidence 45667778888999999999999999999999889999999999999999999999999998776 3555433333 33
Q ss_pred HHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCC-CCHHHHHHHHHHHHHcCCHHH
Q 036072 323 NLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFK-PDVVAHNIMLEGLLKIGKRSD 401 (631)
Q Consensus 323 ~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~ty~~li~~~~~~g~~~~ 401 (631)
.+...+..+.|...+++..+..+.+...+..+...+...|++++|...|.++...... .+...+..+...+...|+.++
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~ 273 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALGTGDA 273 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHCTTCH
T ss_pred HHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcCCCCc
Confidence 4667788888999999988877888999999999999999999999999999986322 126789999999999999999
Q ss_pred HHHHHHHHHH
Q 036072 402 AIKLFEVMKA 411 (631)
Q Consensus 402 A~~ll~~m~~ 411 (631)
|...|++...
T Consensus 274 a~~~~r~al~ 283 (287)
T 3qou_A 274 LASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 9998887643
|
| >3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus} | Back alignment and structure |
|---|
Probab=98.55 E-value=2.7e-06 Score=80.13 Aligned_cols=57 Identities=19% Similarity=0.262 Sum_probs=29.3
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 354 LLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKA 411 (631)
Q Consensus 354 Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~ 411 (631)
+...|.+.|++++|...|++..+.. +-+...|..+..++...|++++|+..|++..+
T Consensus 60 lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 116 (208)
T 3urz_A 60 LALAYKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQ 116 (208)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4555555555555555555555432 11344455555555555555555555555544
|
| >3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans} | Back alignment and structure |
|---|
Probab=98.54 E-value=3.7e-05 Score=76.76 Aligned_cols=220 Identities=10% Similarity=0.009 Sum_probs=150.0
Q ss_pred CChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcc--CHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH----HcC---CC
Q 036072 259 RQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAK--ERKKAVAIFELMNKYKFKAGVDTINCLLENL----GRS---KL 329 (631)
Q Consensus 259 g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g--~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~----~~~---g~ 329 (631)
...++|+.+++.+...++-...+|+.--.++...+ .++++++.++.+.... +-+..+|+.--..+ ... ++
T Consensus 47 e~s~~aL~~t~~~L~~nP~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n-Pk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 47 EYSERALHITELGINELASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN-EKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC-TTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CCCHHHHHHHHHHHHHCcHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC-cccHHHHHHHHHHHHHHHHhccccCC
Confidence 34457777777777777766667776666666666 7777888777777654 33445555433333 333 67
Q ss_pred hHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHH--HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC------HHH
Q 036072 330 PKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLM--EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGK------RSD 401 (631)
Q Consensus 330 ~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~--~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~------~~~ 401 (631)
+++++.+++.+.+..+.|..+|+.-.-.+.+.|.++ ++++.++.+.+.... |..+|+.-...+.+.++ +++
T Consensus 126 ~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d~~-N~sAW~~R~~ll~~l~~~~~~~~~~e 204 (306)
T 3dra_A 126 PYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTDLK-NNSAWSHRFFLLFSKKHLATDNTIDE 204 (306)
T ss_dssp THHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHSSGGGCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccchhhhHHH
Confidence 788888888887776777778877777777778777 888888888876433 66677766666666665 778
Q ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCH-HHHHHHHHHHHHcC--CCCCHHHHHHHHHHH
Q 036072 402 AIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRM-DIVYDLLKEMEERG--CPPDGLTYNALIKLM 478 (631)
Q Consensus 402 A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~-~~A~~l~~~m~~~g--~~p~~~t~~~li~~~ 478 (631)
+++.++.+.... |+ +..+|+-+-..+.+.|+. +.+..+..++.+.+ -..+...+..+...|
T Consensus 205 El~~~~~aI~~~--p~--------------n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~ 268 (306)
T 3dra_A 205 ELNYVKDKIVKC--PQ--------------NPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIY 268 (306)
T ss_dssp HHHHHHHHHHHC--SS--------------CHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--CC--------------CccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHH
Confidence 888888777653 33 445555555555555553 33444555544332 134677888888888
Q ss_pred HhcCChhHHHHHHHHHHH
Q 036072 479 KIQKMPDEAVRIYKEMVR 496 (631)
Q Consensus 479 ~~~g~~~~A~~l~~~m~~ 496 (631)
.+.|+.++|.++++.+.+
T Consensus 269 ~~~~~~~~A~~~~~~l~~ 286 (306)
T 3dra_A 269 TQQKKYNESRTVYDLLKS 286 (306)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HccCCHHHHHHHHHHHHh
Confidence 899999999999999886
|
| >2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A* | Back alignment and structure |
|---|
Probab=98.54 E-value=2.6e-06 Score=93.60 Aligned_cols=154 Identities=6% Similarity=-0.156 Sum_probs=112.7
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 036072 447 RRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVW 526 (631)
Q Consensus 447 g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~ 526 (631)
|++++|.+.|++..+... -+...|..+...+...|++++|.+.|++..+.. +-+...+..+..+|...|++++|.+.+
T Consensus 3 g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~ 80 (568)
T 2vsy_A 3 ADGPRELLQLRAAVRHRP-QDFVAWLMLADAELGMGDTTAGEMAVQRGLALH-PGHPEAVARLGRVRWTQQRHAEAAVLL 80 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS-TTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 678888888888776532 257788888888999999999999999988764 345778888999999999999999999
Q ss_pred HHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhc---CCHHHHHHHHHHHHhcC
Q 036072 527 DEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRA---GRSYVLDELAQKMRFSG 603 (631)
Q Consensus 527 ~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~---g~~~~A~~l~~~m~~~g 603 (631)
++..+.... +...|..+..+|...|++++|.+.+++..+.. +.+...+..+..++... |+.++|.+.+++....+
T Consensus 81 ~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~~~ 158 (568)
T 2vsy_A 81 QQASDAAPE-HPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVAQG 158 (568)
T ss_dssp HHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHHHT
T ss_pred HHHHhcCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHhcC
Confidence 998876433 67888888899999999999999999988764 34567788888899888 99999999998887655
Q ss_pred C
Q 036072 604 K 604 (631)
Q Consensus 604 ~ 604 (631)
.
T Consensus 159 p 159 (568)
T 2vsy_A 159 V 159 (568)
T ss_dssp C
T ss_pred C
Confidence 4
|
| >2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.53 E-value=1.2e-06 Score=98.45 Aligned_cols=173 Identities=11% Similarity=0.022 Sum_probs=136.7
Q ss_pred HhcCCHHHHHHHHHHHH--------HcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhh
Q 036072 359 CRVKNLMEAGRVWNEMI--------DKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCK 430 (631)
Q Consensus 359 ~~~g~~~~A~~l~~~m~--------~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~ 430 (631)
...|++++|++.|++.. +. ...+...+..+..++...|++++|++.|+...+. .|+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~-~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~--~p~------------- 465 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVD-FSESVELPLMEVRALLDLGDVAKATRKLDDLAER--VGW------------- 465 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------C-CTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--HCC-------------
T ss_pred ccccCHHHHHHHHHHhhhhcccccccc-cccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc--Ccc-------------
Confidence 77899999999999988 32 2335677888888999999999999999998875 333
Q ss_pred cCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHH
Q 036072 431 QNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIM 510 (631)
Q Consensus 431 ~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li 510 (631)
+...|..+...|...|++++|.+.|++..+.... +...|..+..+|.+.|++++ ++.|++..+.. .-+...|..+.
T Consensus 466 -~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg 541 (681)
T 2pzi_A 466 -RWRLVWYRAVAELLTGDYDSATKHFTEVLDTFPG-ELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLA 541 (681)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHH
T ss_pred -hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-ChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHH
Confidence 5566777888888999999999999998876433 56788888889999999999 99999998864 34677889999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCC
Q 036072 511 KSYFQTGNYEMGRKVWDEMIRRGCCPD-DNSYTVLIGGLISQDR 553 (631)
Q Consensus 511 ~~~~~~g~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~ 553 (631)
.+|...|++++|.+.|++..+.. |+ ...|..+..++...++
T Consensus 542 ~~~~~~g~~~~A~~~~~~al~l~--P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 542 RARSAEGDRVGAVRTLDEVPPTS--RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHHTTCHHHHHHHHHTSCTTS--TTHHHHHHHHHHHTC----
T ss_pred HHHHHcCCHHHHHHHHHhhcccC--cccHHHHHHHHHHHHccCC
Confidence 99999999999999999887653 44 5677777777766554
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.53 E-value=4.9e-07 Score=80.54 Aligned_cols=145 Identities=12% Similarity=0.020 Sum_probs=108.0
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 036072 439 LITGFGNRRRMDIVYDLLKEMEERGCPP-DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517 (631)
Q Consensus 439 li~~~~~~g~~~~A~~l~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g 517 (631)
|...+...|++++|+..+...... .| +...+..+...|.+.|++++|++.|++.++.. +-+..+|..+..+|...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~~--~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTPS--PRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSCS--HHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhccc--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 345566678889998888876543 22 23345667888999999999999999998864 346788999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHH-HHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 036072 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKY-LEEMLEKGMKAPVLDYNKFAADLSRAGR 588 (631)
Q Consensus 518 ~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l-l~~m~~~g~~p~~~~~~~li~~~~~~g~ 588 (631)
++++|...|++.++.... +...|..+...|.+.|+.++|.+. +++..+.. +-+...|......+...|+
T Consensus 80 ~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPT-QKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp CHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCCC
T ss_pred chHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhCc
Confidence 999999999999886443 678888899999999998776654 57777753 3356677777777766664
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.52 E-value=2.2e-05 Score=78.10 Aligned_cols=200 Identities=7% Similarity=0.008 Sum_probs=141.9
Q ss_pred CCCCHHHHHHHHHhhccCchhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCH------H
Q 036072 207 INLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSM------E 280 (631)
Q Consensus 207 ~~~~~~~~~~vl~~~~~~~~~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~------~ 280 (631)
..++...+..+...++-..........+.. ......+...+..+...|++++|.+.+++..+...... .
T Consensus 42 ~~~~~~~l~~l~~~l~~~~~~l~~~~~~~~-----~~~~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~ 116 (293)
T 2qfc_A 42 VYPSMDILQGIAAKLQIPIIHFYEVLIYSD-----IERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQ 116 (293)
T ss_dssp SCCCHHHHHHHTTTSCCCTHHHHHHHHHHH-----HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCcCHHHHhccccccc-----hhHHHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHH
Confidence 356666666666665544332211111110 01134556678888999999999999998887655332 2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhCCC---CcC--HHHHHHHHHHHHcCCChHHHHHHHHHHhc---ccCCC----h
Q 036072 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKF---KAG--VDTINCLLENLGRSKLPKEAQLLFDKLKH---RFTPN----L 348 (631)
Q Consensus 281 ~~~~li~~~~~~g~~~~A~~v~~~m~~~g~---~~~--~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~---~~~p~----~ 348 (631)
.+..+...+...|++++|+..++...+... .+. ..+++.+...|...|++++|...|++..+ ..+.+ .
T Consensus 117 ~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~ 196 (293)
T 2qfc_A 117 WQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDV 196 (293)
T ss_dssp HHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHH
T ss_pred HHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchH
Confidence 344566667788999999999999876421 122 55888999999999999999999999762 22222 2
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCC-CHHHHHHHHHHHHHcCCHHHH-HHHHHHHHH
Q 036072 349 TTYTVLLGGWCRVKNLMEAGRVWNEMIDKG----FKP-DVVAHNIMLEGLLKIGKRSDA-IKLFEVMKA 411 (631)
Q Consensus 349 ~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g----~~p-~~~ty~~li~~~~~~g~~~~A-~~ll~~m~~ 411 (631)
.+|+.+...|.+.|++++|...+++..+.. ... -..+|..+..+|.+.|+.++| ...++....
T Consensus 197 ~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 197 KVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 588999999999999999999999877531 111 166788899999999999999 777776643
|
| >2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus} | Back alignment and structure |
|---|
Probab=98.51 E-value=1.8e-06 Score=78.87 Aligned_cols=57 Identities=9% Similarity=-0.039 Sum_probs=31.1
Q ss_pred HHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036072 320 LLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMID 376 (631)
Q Consensus 320 Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~ 376 (631)
+...+...|++++|...|++..+..+.+...+..+...+.+.|++++|...|+....
T Consensus 12 ~a~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~ 68 (176)
T 2r5s_A 12 QVSELLQQGEHAQALNVIQTLSDELQSRGDVKLAKADCLLETKQFELAQELLATIPL 68 (176)
T ss_dssp HHHHHHHTTCHHHHHHHHHTSCHHHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCG
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhh
Confidence 344455555555555555555444344555555555555555566555555555544
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.49 E-value=4.1e-06 Score=84.21 Aligned_cols=203 Identities=13% Similarity=0.003 Sum_probs=130.1
Q ss_pred ccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 036072 292 AKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVW 371 (631)
Q Consensus 292 ~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~ 371 (631)
.|++++|.+++++..+.. +.. .+...++++.|...|.+. ...|...|++++|...|
T Consensus 4 ~~~~~eA~~~~~~a~k~~-~~~---------~~~~~~~~~~A~~~~~~a--------------~~~~~~~g~~~~A~~~~ 59 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYL-KTS---------FMKWKPDYDSAASEYAKA--------------AVAFKNAKQLEQAKDAY 59 (307)
T ss_dssp HHHHHHHHHHHHHHHHHH-CCC---------SSSCSCCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHc-ccc---------ccCCCCCHHHHHHHHHHH--------------HHHHHHcCCHHHHHHHH
Confidence 577888888888776542 111 011147777777776654 45677889999999988
Q ss_pred HHHHHc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-cHHHHHHHHHHHhhcCHHHHHHHHHHHhc
Q 036072 372 NEMIDK----GFKP-DVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP-NVRSYTIMIWKFCKQNAAVYTCLITGFGN 445 (631)
Q Consensus 372 ~~m~~~----g~~p-~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p-~~~~~~~li~~~~~~~~~~~~~li~~~~~ 445 (631)
.+..+. |-.. -..+|+.+...|...|++++|+..|++..+.-... +... ...++..+...|..
T Consensus 60 ~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~-----------~a~~~~~lg~~~~~ 128 (307)
T 2ifu_A 60 LQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDT-----------AAMALDRAGKLMEP 128 (307)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHH-----------HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHH-----------HHHHHHHHHHHHHc
Confidence 877653 1110 14477888888889999999999998876431110 1100 12345667777777
Q ss_pred cCCHHHHHHHHHHHHHcCCCC-----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCCC-HHHHHHHHHHHHH
Q 036072 446 RRRMDIVYDLLKEMEERGCPP-----DGLTYNALIKLMKIQKMPDEAVRIYKEMVRS----GFKPT-IHTYNMIMKSYFQ 515 (631)
Q Consensus 446 ~g~~~~A~~l~~~m~~~g~~p-----~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~t~~~Li~~~~~ 515 (631)
|++++|+..|++..+..... ...+++.+...|...|++++|+..|++..+. +..+. ...+..+..++..
T Consensus 129 -g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~ 207 (307)
T 2ifu_A 129 -LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLH 207 (307)
T ss_dssp -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH
Confidence 88888888888765431100 1346667777778888888888888777652 21111 2245556666666
Q ss_pred cCCHHHHHHHHHHHH
Q 036072 516 TGNYEMGRKVWDEMI 530 (631)
Q Consensus 516 ~g~~~~A~~~~~~m~ 530 (631)
.|++++|...|++..
T Consensus 208 ~g~~~~A~~~~~~al 222 (307)
T 2ifu_A 208 RADYVAAQKCVRESY 222 (307)
T ss_dssp TTCHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHh
Confidence 777888877777776
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.49 E-value=1.1e-05 Score=80.37 Aligned_cols=162 Identities=10% Similarity=0.066 Sum_probs=123.5
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCC-CCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC----HHHHHH
Q 036072 439 LITGFGNRRRMDIVYDLLKEMEERGC-PPDG----LTYNALIKLMKIQKMPDEAVRIYKEMVRSGFK-PT----IHTYNM 508 (631)
Q Consensus 439 li~~~~~~g~~~~A~~l~~~m~~~g~-~p~~----~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~~ 508 (631)
.+..+...|++++|..++++..+... .|+. ..+..+...+...+++++|+..|+++.+.... .+ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46678888999999999999887432 2221 13334666677778999999999999984322 22 347899
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHc-----CCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCCC-HHHHH
Q 036072 509 IMKSYFQTGNYEMGRKVWDEMIRR-----GCCPD-DNSYTVLIGGLISQDRSGEAYKYLEEMLEK----GMKAP-VLDYN 577 (631)
Q Consensus 509 Li~~~~~~g~~~~A~~~~~~m~~~-----g~~p~-~~t~~~li~~~~~~g~~~~A~~ll~~m~~~----g~~p~-~~~~~ 577 (631)
+..+|...|++++|...|+++.+. +..+. ..+|..+...|.+.|++++|.+++++.++. +..+. ...|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 999999999999999999998841 11112 347888999999999999999999988753 22222 56789
Q ss_pred HHHHHHHhcCC-HHHHHHHHHHHH
Q 036072 578 KFAADLSRAGR-SYVLDELAQKMR 600 (631)
Q Consensus 578 ~li~~~~~~g~-~~~A~~l~~~m~ 600 (631)
.+..++.+.|+ +++|.+.+++..
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHH
Confidence 99999999995 699999888764
|
| >2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B | Back alignment and structure |
|---|
Probab=98.49 E-value=0.00043 Score=74.29 Aligned_cols=322 Identities=9% Similarity=0.013 Sum_probs=187.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccC-HHHHHHHHHHHHhC-CC-CcCHHHHHHHHH
Q 036072 246 RTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKE-RKKAVAIFELMNKY-KF-KAGVDTINCLLE 322 (631)
Q Consensus 246 ~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~-~~~A~~v~~~m~~~-g~-~~~~~~~~~Ll~ 322 (631)
.+|...+..+-. |+++.+..+|++.... .++...|...+....+.+. .+.+..+|+..... |. ..+...|...+.
T Consensus 16 ~vyer~l~~~P~-~~~e~~~~iferal~~-~ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~ 93 (493)
T 2uy1_A 16 AIMEHARRLYMS-KDYRSLESLFGRCLKK-SYNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIE 93 (493)
T ss_dssp HHHHHHHHHHHT-TCHHHHHHHHHHHSTT-CCCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHH
T ss_pred HHHHHHHHHCCC-CCHHHHHHHHHHHhcc-CCCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHH
Confidence 445555555544 8899999999999885 4688899888888887764 46677888887764 43 347788888887
Q ss_pred HHHc----CCChHHHHHHHHHHhcccCCC-h-hhHHHHHHHHHhcC--------------CHHHHHHHHHHHHHcCCCCC
Q 036072 323 NLGR----SKLPKEAQLLFDKLKHRFTPN-L-TTYTVLLGGWCRVK--------------NLMEAGRVWNEMIDKGFKPD 382 (631)
Q Consensus 323 ~~~~----~g~~~~A~~l~~~m~~~~~p~-~-~~y~~Li~~~~~~g--------------~~~~A~~l~~~m~~~g~~p~ 382 (631)
.+.. .++.+.+.++|+....- ++. . ..|...... .+.. .+..|..+++++...--..+
T Consensus 94 f~~~~~~~~~~~~~vR~iy~rAL~~-P~~~~~~lw~~Y~~f-E~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s 171 (493)
T 2uy1_A 94 EEGKIEDEQTRIEKIRNGYMRALQT-PMGSLSELWKDFENF-ELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWS 171 (493)
T ss_dssp HTSSCSSHHHHHHHHHHHHHHHHTS-CCTTHHHHHHHHHHH-HHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHhchhhhHHHHHHHHHHHHHHhC-hhhhHHHHHHHHHHH-HHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhcc
Confidence 6543 35678899999998762 221 1 123222221 1111 22223333333322100001
Q ss_pred HHHHHHHHHHHHHcC--C-----HHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHH
Q 036072 383 VVAHNIMLEGLLKIG--K-----RSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDL 455 (631)
Q Consensus 383 ~~ty~~li~~~~~~g--~-----~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l 455 (631)
...|...+..-...+ - .+.+..+|+++... +. .....|-..+..+.+.|+.+.|..+
T Consensus 172 ~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~al~~---------------~p-~~~~lW~~ya~~~~~~~~~~~ar~i 235 (493)
T 2uy1_A 172 VKNAARLIDLEMENGMKLGGRPHESRMHFIHNYILDS---------------FY-YAEEVYFFYSEYLIGIGQKEKAKKV 235 (493)
T ss_dssp HHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH---------------TT-TCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHHHHc---------------CC-CCHHHHHHHHHHHHHcCCHHHHHHH
Confidence 222322222211100 0 12233344443332 11 2466777778888889999999999
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCC---------C---CCCHHHHHHHHHHHHHcCCHHHHH
Q 036072 456 LKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSG---------F---KPTIHTYNMIMKSYFQTGNYEMGR 523 (631)
Q Consensus 456 ~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g---------~---~p~~~t~~~Li~~~~~~g~~~~A~ 523 (631)
+++.... +.+...+. .|+...+.++. ++.+.+.- . ......|...+..+.+.++.+.|.
T Consensus 236 ~erAi~~--P~~~~l~~----~y~~~~e~~~~---~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR 306 (493)
T 2uy1_A 236 VERGIEM--SDGMFLSL----YYGLVMDEEAV---YGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFR 306 (493)
T ss_dssp HHHHHHH--CCSSHHHH----HHHHHTTCTHH---HHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHH
T ss_pred HHHHHhC--CCcHHHHH----HHHhhcchhHH---HHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHH
Confidence 9999887 33333322 23332222222 23322210 0 112355777777777888999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHH-cCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Q 036072 524 KVWDEMIRRGCCPDDNSYTVLIGGLIS-QDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKM 599 (631)
Q Consensus 524 ~~~~~m~~~g~~p~~~t~~~li~~~~~-~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m 599 (631)
.+|+.. ... ..+...|......-.. .++.+.|..+|+...+.. +-+...+..+++...+.|+.+.|..++++.
T Consensus 307 ~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~ 380 (493)
T 2uy1_A 307 KLFIEL-GNE-GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRL 380 (493)
T ss_dssp HHHHHH-TTS-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHS
T ss_pred HHHHHh-hCC-CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 999999 321 2344555432222222 346999999999998753 233555677788888999999999888886
|
| >3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A* | Back alignment and structure |
|---|
Probab=98.47 E-value=5.8e-06 Score=82.22 Aligned_cols=168 Identities=8% Similarity=-0.031 Sum_probs=131.9
Q ss_pred CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHH
Q 036072 277 LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLG 356 (631)
Q Consensus 277 ~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~ 356 (631)
.+...+..+...+...|++++|+..|+...+.. +-+...+..+...|...|++++|..+++++....+...........
T Consensus 115 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~~~~ 193 (287)
T 3qou_A 115 REEELXAQQAMQLMQESNYTDALPLLXDAWQLS-NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLVAQI 193 (287)
T ss_dssp CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHHHHH
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHHHHH
Confidence 345677888889999999999999999999875 5578889999999999999999999999987654422333333344
Q ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHH
Q 036072 357 GWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVY 436 (631)
Q Consensus 357 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~ 436 (631)
.+.+.++.++|...|++..... +.+...+..+...+...|++++|+..|.++.+.....+ +...+
T Consensus 194 ~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~--------------~~~a~ 258 (287)
T 3qou_A 194 ELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAA--------------DGQTR 258 (287)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGG--------------GGHHH
T ss_pred HHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccc--------------cchHH
Confidence 5777888899999999988863 34678888999999999999999999999988643221 24556
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHH
Q 036072 437 TCLITGFGNRRRMDIVYDLLKEME 460 (631)
Q Consensus 437 ~~li~~~~~~g~~~~A~~l~~~m~ 460 (631)
..++..|...|+.++|...+++..
T Consensus 259 ~~l~~~~~~~g~~~~a~~~~r~al 282 (287)
T 3qou_A 259 XTFQEILAALGTGDALASXYRRQL 282 (287)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHH
Confidence 677777888888888887777643
|
| >3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A | Back alignment and structure |
|---|
Probab=98.46 E-value=2.6e-05 Score=77.58 Aligned_cols=198 Identities=8% Similarity=0.005 Sum_probs=144.4
Q ss_pred CCCCCHHHHHHHHHhhccCchhHHHHHHHhhcCCCCCCCHH---HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHH--
Q 036072 206 GINLSHNLVVDVLERFRHARRPAFRFFCWAGDKPGFAHNSR---TYNSMMSILGRARQFETMVSMLEEMGEKGLLSME-- 280 (631)
Q Consensus 206 ~~~~~~~~~~~vl~~~~~~~~~A~~~f~~~~~~~g~~p~~~---~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~-- 280 (631)
...++.+.+..+...++-... .+|... . ..+.. .+...+..+...|++++|..++++..+.....+.
T Consensus 41 ~~~~~~~~l~~i~~~l~~~~~---~~~~~~----~-~~~~~~~~~l~~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~ 112 (293)
T 3u3w_A 41 AVYPSMDILQGIAAKLQIPII---HFYEVL----I-YSDIERKKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQ 112 (293)
T ss_dssp SCCCCHHHHHHHHHHHTCCTH---HHHHTT----T-SSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHH
T ss_pred CCCCCHHHHHHHHHHhCcCHH---HHhCCC----C-CCcchhHHHHHHHHHHHHHHhhHHHHHHHHHHHhccccCChHHH
Confidence 356888888888887775532 333321 1 11233 3334477888999999999999999876543332
Q ss_pred ----HHHHHHHHHHHccCHHHHHHHHHHHHhCCCC-cC----HHHHHHHHHHHHcCCChHHHHHHHHHHhcc---c---C
Q 036072 281 ----TFKIAMNAFAAAKERKKAVAIFELMNKYKFK-AG----VDTINCLLENLGRSKLPKEAQLLFDKLKHR---F---T 345 (631)
Q Consensus 281 ----~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~-~~----~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~---~---~ 345 (631)
.+..+...+...+++++|+..|+...+.... .+ ..+++.+...|...|++++|...|++..+. . .
T Consensus 113 ~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~ 192 (293)
T 3u3w_A 113 QFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNE 192 (293)
T ss_dssp HHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCH
T ss_pred HHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccch
Confidence 3334666777778999999999999884322 22 346899999999999999999999997631 1 1
Q ss_pred C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHHcCC-HHHHHHHHHHHHH
Q 036072 346 P-NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK----GFKPD-VVAHNIMLEGLLKIGK-RSDAIKLFEVMKA 411 (631)
Q Consensus 346 p-~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~----g~~p~-~~ty~~li~~~~~~g~-~~~A~~ll~~m~~ 411 (631)
+ ...+|..+...|.+.|++++|...+++..+. +..+. ..+|..+..+|.+.|+ +++|.+.+++...
T Consensus 193 ~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 193 EFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 1 2347889999999999999999999987753 22222 6788889999999994 6999999988764
|
| >4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A* | Back alignment and structure |
|---|
Probab=98.46 E-value=5e-07 Score=80.47 Aligned_cols=139 Identities=7% Similarity=-0.119 Sum_probs=75.7
Q ss_pred hcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHH
Q 036072 257 RARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLL 336 (631)
Q Consensus 257 ~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l 336 (631)
..|++++|+..++......+-.+..+..+...|...|++++|++.|+..++.. +-+..+|..+..+|...|++++|...
T Consensus 9 ~~~~~e~ai~~~~~a~~~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~~A~~~ 87 (150)
T 4ga2_A 9 SKADVERYIASVQGSTPSPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTDKAVEC 87 (150)
T ss_dssp CHHHHHHHHHHHHHHSCSHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HcChHHHHHHHHHHhcccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchHHHHHH
Confidence 34555666666555544322223344555666666666666666666666554 34556666666666666666666666
Q ss_pred HHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHH-HHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 036072 337 FDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRV-WNEMIDKGFKPDVVAHNIMLEGLLKIG 397 (631)
Q Consensus 337 ~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l-~~~m~~~g~~p~~~ty~~li~~~~~~g 397 (631)
|++..+..+.+..+|..+...|.+.|++++|.+. +++..+.. +-+..+|......+...|
T Consensus 88 ~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~-P~~~~~~~l~~~ll~~~G 148 (150)
T 4ga2_A 88 YRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLF-PGSPAVYKLKEQLLDCEG 148 (150)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTCC
T ss_pred HHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhC
Confidence 6665554444556666666666666666554443 35554431 113444444444444333
|
| >2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646} | Back alignment and structure |
|---|
Probab=98.45 E-value=2.2e-05 Score=78.08 Aligned_cols=184 Identities=10% Similarity=0.045 Sum_probs=134.2
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCH-----HHHHHHHHHHHhcCChhHHHHHHHHHHHCCC---CCC--HH
Q 036072 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDG-----LTYNALIKLMKIQKMPDEAVRIYKEMVRSGF---KPT--IH 504 (631)
Q Consensus 435 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~-----~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~---~p~--~~ 504 (631)
.+...+..+...|++++|.+.+.+..+....... ..+..+...+...|++++|+..+++..+... .+. ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 4455677888999999999999988775332111 2234455667788999999999999886321 122 45
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCC-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CH
Q 036072 505 TYNMIMKSYFQTGNYEMGRKVWDEMIRR-GCCPD-----DNSYTVLIGGLISQDRSGEAYKYLEEMLEK----GMKA-PV 573 (631)
Q Consensus 505 t~~~Li~~~~~~g~~~~A~~~~~~m~~~-g~~p~-----~~t~~~li~~~~~~g~~~~A~~ll~~m~~~----g~~p-~~ 573 (631)
+|+.+...|...|++++|...|++..+. ...|+ ..+|..+...|...|++++|.+++++.++. +... -.
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 8899999999999999999999998732 01112 258888999999999999999999998753 2111 15
Q ss_pred HHHHHHHHHHHhcCCHHHH-HHHHHHH----HhcCCCchHHHHHHHHHhh
Q 036072 574 LDYNKFAADLSRAGRSYVL-DELAQKM----RFSGKFEVSNVLARWAETT 618 (631)
Q Consensus 574 ~~~~~li~~~~~~g~~~~A-~~l~~~m----~~~g~~~~~~~l~~~~~~~ 618 (631)
..|..+..+|.+.|+.++| ...+++. +..|.....+.+..|..++
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~~~~~~~~~~~~~~~~~~~~~ 286 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKASFFFDILEMHAYKEALVNKISRL 286 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHhCcHhhHHHHHHHHHHH
Confidence 6788999999999999999 7767664 3345555555555555443
|
| >2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio} | Back alignment and structure |
|---|
Probab=98.44 E-value=5.4e-06 Score=83.29 Aligned_cols=231 Identities=9% Similarity=0.026 Sum_probs=159.6
Q ss_pred CCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 036072 327 SKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLF 406 (631)
Q Consensus 327 ~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll 406 (631)
.|++++|.+++++..+..+... +...+++++|...|... ...|...|++++|...|
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~~~---------~~~~~~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~ 59 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKTSF---------MKWKPDYDSAASEYAKA---------------AVAFKNAKQLEQAKDAY 59 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCCCS---------SSCSCCHHHHHHHHHHH---------------HHHHHHTTCHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccccc---------cCCCCCHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHH
Confidence 5678889999988776433220 11157888888888765 44677889999999999
Q ss_pred HHHHHcCCC-CcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHh
Q 036072 407 EVMKAKGPS-PNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEER----GCPP-DGLTYNALIKLMKI 480 (631)
Q Consensus 407 ~~m~~~g~~-p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~li~~~~~ 480 (631)
.+..+.... .+... -..+|+.+...|...|++++|...|++..+. |-.. ...+++.+...|..
T Consensus 60 ~~al~~~~~~~~~~~-----------~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~ 128 (307)
T 2ifu_A 60 LQEAEAHANNRSLFH-----------AAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP 128 (307)
T ss_dssp HHHHHHHHHTTCHHH-----------HHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHH-----------HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc
Confidence 887653110 01100 1346777888999999999999999886543 2111 13567778888888
Q ss_pred cCChhHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCC-HHHHHHHHHHHHH
Q 036072 481 QKMPDEAVRIYKEMVRS----GFKP-TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR----GCCPD-DNSYTVLIGGLIS 550 (631)
Q Consensus 481 ~g~~~~A~~l~~~m~~~----g~~p-~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~----g~~p~-~~t~~~li~~~~~ 550 (631)
|++++|+..|++..+. +-.. ...+++.+...|...|++++|...|++..+. +..++ ...+..+..++..
T Consensus 129 -g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~ 207 (307)
T 2ifu_A 129 -LDLSKAVHLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLH 207 (307)
T ss_dssp -TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred -CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHH
Confidence 9999999999988753 1111 1467888999999999999999999998863 21111 2356667777788
Q ss_pred cCCHHHHHHHHHHHHHCCC--CCC--HHHHHHHHHHHHhcCCHHHHHHH
Q 036072 551 QDRSGEAYKYLEEMLEKGM--KAP--VLDYNKFAADLSRAGRSYVLDEL 595 (631)
Q Consensus 551 ~g~~~~A~~ll~~m~~~g~--~p~--~~~~~~li~~~~~~g~~~~A~~l 595 (631)
.|++++|...|++.. ... ... ......++.++ ..|+.+.+.++
T Consensus 208 ~g~~~~A~~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 208 RADYVAAQKCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp TTCHHHHHHHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred cCCHHHHHHHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 899999999999998 421 111 12344556655 57787766663
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.43 E-value=7.1e-06 Score=73.26 Aligned_cols=96 Identities=7% Similarity=-0.070 Sum_probs=48.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 036072 246 RTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG 325 (631)
Q Consensus 246 ~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~ 325 (631)
..|..+...+...|+++.|...|++..+..+.+..++..+..++...|++++|++.++...+.. +.+...+..+..++.
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHH
Confidence 3344455555555555555555555555444444555555555555555555555555554432 233444444444444
Q ss_pred cCCChHHHHHHHHHHhc
Q 036072 326 RSKLPKEAQLLFDKLKH 342 (631)
Q Consensus 326 ~~g~~~~A~~l~~~m~~ 342 (631)
..|++++|...|++..+
T Consensus 93 ~~~~~~~A~~~~~~a~~ 109 (166)
T 1a17_A 93 ALGKFRAALRDYETVVK 109 (166)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHH
Confidence 44455555444444443
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.40 E-value=9.4e-06 Score=68.22 Aligned_cols=110 Identities=10% Similarity=0.037 Sum_probs=58.5
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENL 324 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~ 324 (631)
...|..+...+...|++++|..+|+++....+.+..++..+...+...|++++|+..|+.+.+.. +.+..++..+...|
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 34555555666666666666666666655544455555555555555556666555555555442 23444455555555
Q ss_pred HcCCChHHHHHHHHHHhcccCCChhhHHHHH
Q 036072 325 GRSKLPKEAQLLFDKLKHRFTPNLTTYTVLL 355 (631)
Q Consensus 325 ~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li 355 (631)
...|++++|...|+++.+..+.+...+..+.
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~ 118 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLG 118 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHH
Confidence 5555555555555554443333333333333
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.38 E-value=2.5e-05 Score=73.18 Aligned_cols=130 Identities=12% Similarity=0.000 Sum_probs=99.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036072 434 AVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSY 513 (631)
Q Consensus 434 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~ 513 (631)
..+..+...+...|++++|...|++. +.|+...|..+...|...|++++|+..|++..+.. +.+...+..+..+|
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~ 81 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLY 81 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHH
Confidence 34556677788888888888888766 35677888888888888888888888888887753 34667788888888
Q ss_pred HHcCCHHHHHHHHHHHHHcCCC--------------C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 036072 514 FQTGNYEMGRKVWDEMIRRGCC--------------P-DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568 (631)
Q Consensus 514 ~~~g~~~~A~~~~~~m~~~g~~--------------p-~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g 568 (631)
...|++++|...|++..+.... | +...+..+..+|...|++++|.+.|+++.+..
T Consensus 82 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 82 YQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 8888888888888888875322 1 12677778888888888888888888887753
|
| >1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B* | Back alignment and structure |
|---|
Probab=98.35 E-value=2.2e-05 Score=73.57 Aligned_cols=125 Identities=12% Similarity=-0.105 Sum_probs=73.3
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCC
Q 036072 284 IAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKN 363 (631)
Q Consensus 284 ~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~ 363 (631)
.+...+...|++++|+..|+... .++...+..+...|...|++++|...|++..+..+.+...|..+...|...|+
T Consensus 11 ~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 11 NEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHccc
Confidence 34445555566666666555442 34555666666666666666666666666554444455566666666666666
Q ss_pred HHHHHHHHHHHHHcCCC--------------C-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036072 364 LMEAGRVWNEMIDKGFK--------------P-DVVAHNIMLEGLLKIGKRSDAIKLFEVMKAK 412 (631)
Q Consensus 364 ~~~A~~l~~~m~~~g~~--------------p-~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~ 412 (631)
+++|...|++..+.... | ....+..+..+|.+.|++++|.+.|+...+.
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 66666666666653211 1 1245566666667777777777777766654
|
| >1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A | Back alignment and structure |
|---|
Probab=98.33 E-value=1.9e-05 Score=70.35 Aligned_cols=130 Identities=13% Similarity=-0.018 Sum_probs=109.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHH
Q 036072 280 ETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWC 359 (631)
Q Consensus 280 ~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~ 359 (631)
..+..+...+...|++++|...|+...+.. +.+..++..+...+...|++++|...+++..+..+.+...|..+...+.
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 467778888999999999999999998865 5578889999999999999999999999988776778889999999999
Q ss_pred hcCCHHHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 360 RVKNLMEAGRVWNEMIDKGFKPDVVAH--NIMLEGLLKIGKRSDAIKLFEVMKA 411 (631)
Q Consensus 360 ~~g~~~~A~~l~~~m~~~g~~p~~~ty--~~li~~~~~~g~~~~A~~ll~~m~~ 411 (631)
..|++++|...|++..+... .+...+ ..++..+...|++++|++.+.....
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 99999999999999988632 244444 3344447788999999999887643
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.33 E-value=9.8e-06 Score=69.21 Aligned_cols=116 Identities=7% Similarity=-0.105 Sum_probs=65.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 036072 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLEN 323 (631)
Q Consensus 244 ~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~ 323 (631)
+...|..+...+.+.|++++|...|++..+....+..++..+...+...|++++|++.++...+.. +.+...+..+..+
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 93 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHH
Confidence 355566666666666666666666666666555555566666666666666666666666655543 3345555555555
Q ss_pred HHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHh
Q 036072 324 LGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCR 360 (631)
Q Consensus 324 ~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~ 360 (631)
|...|++++|...|++..+..+.+...+..+...+.+
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~ 130 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMA 130 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHH
Confidence 5555666666555555544333333444444444433
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.32 E-value=1.1e-05 Score=68.37 Aligned_cols=116 Identities=15% Similarity=-0.034 Sum_probs=55.0
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 036072 246 RTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG 325 (631)
Q Consensus 246 ~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~ 325 (631)
..|..+...+...|+++.|...|++.....+.+..++..+...+...|++++|++.++...+.. +.+...+..+...+.
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHH
Confidence 3444455555555555555555555555444444455555555555555555555555544432 223444444444444
Q ss_pred cCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcC
Q 036072 326 RSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVK 362 (631)
Q Consensus 326 ~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g 362 (631)
..|++++|...|++..+..+.+...+..+...+.+.|
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~ 128 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLR 128 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHT
T ss_pred HhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHh
Confidence 4444444444444443333333344444444443333
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.29 E-value=5.4e-06 Score=75.54 Aligned_cols=121 Identities=10% Similarity=0.125 Sum_probs=91.8
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHH-HHcCCCh--HH
Q 036072 256 GRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLEN-LGRSKLP--KE 332 (631)
Q Consensus 256 ~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~-~~~~g~~--~~ 332 (631)
...|++++|...+++..+..+.+..++..+...|...|++++|+..|+...+.. +.+...+..+..+ |...|++ ++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRANPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp C-----CCCCHHHHHHHHHCCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhccCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHH
Confidence 345778888888888877777777888888888888888888888888887764 4466777777777 6677887 88
Q ss_pred HHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036072 333 AQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK 377 (631)
Q Consensus 333 A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~ 377 (631)
|...|++..+..+.+...+..+...|...|++++|...|++..+.
T Consensus 100 A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 144 (177)
T 2e2e_A 100 TRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDL 144 (177)
T ss_dssp HHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhh
Confidence 888888877665666777888888888888888888888888775
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.29 E-value=0.00035 Score=70.64 Aligned_cols=154 Identities=10% Similarity=-0.026 Sum_probs=108.2
Q ss_pred hcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcC-C-ChHHH
Q 036072 257 RARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAK-ERKKAVAIFELMNKYKFKAGVDTINCLLENLGRS-K-LPKEA 333 (631)
Q Consensus 257 ~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g-~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~-g-~~~~A 333 (631)
+.+..++|+++++.+...++-+..+|+.--..+...+ .++++++.++.+.... +-+..+|+.-..++.+. + +.+++
T Consensus 66 ~~e~se~AL~lt~~~L~~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~~E 144 (349)
T 3q7a_A 66 KEEKSERALELTEIIVRMNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPVSE 144 (349)
T ss_dssp TTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCHHH
T ss_pred hCCCCHHHHHHHHHHHHhCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChHHH
Confidence 3344557777777777777766667766666666666 4778888887777765 45666666655555444 5 67788
Q ss_pred HHHHHHHhcccCCChhhHHHHHHHHHhcCCHH--------HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-------
Q 036072 334 QLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLM--------EAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGK------- 398 (631)
Q Consensus 334 ~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~--------~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~------- 398 (631)
+.+++.+.+..+.|..+|+--.-.+.+.+.++ ++++.++++.+.... |..+|+.....+.+.++
T Consensus 145 L~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~~~~ 223 (349)
T 3q7a_A 145 IEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETSSRS 223 (349)
T ss_dssp HHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCCHHH
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccchHH
Confidence 88888887766667777776665555555555 888888888887433 77788877777777765
Q ss_pred HHHHHHHHHHHHHc
Q 036072 399 RSDAIKLFEVMKAK 412 (631)
Q Consensus 399 ~~~A~~ll~~m~~~ 412 (631)
++++++.+.++...
T Consensus 224 ~~eELe~~~~aI~~ 237 (349)
T 3q7a_A 224 LQDELIYILKSIHL 237 (349)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHh
Confidence 67888888887765
|
| >1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A | Back alignment and structure |
|---|
Probab=98.28 E-value=3e-05 Score=64.97 Aligned_cols=97 Identities=12% Similarity=0.075 Sum_probs=61.5
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHH
Q 036072 280 ETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWC 359 (631)
Q Consensus 280 ~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~ 359 (631)
..+..+...+...|++++|++.|+.+.+.. +.+..++..+...+...|++++|..+|+++.+..+.+..++..+...+.
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 455566666666677777777776666543 3455566666666666666666666666665544445566666666666
Q ss_pred hcCCHHHHHHHHHHHHHc
Q 036072 360 RVKNLMEAGRVWNEMIDK 377 (631)
Q Consensus 360 ~~g~~~~A~~l~~~m~~~ 377 (631)
..|++++|...|+++.+.
T Consensus 89 ~~~~~~~A~~~~~~~~~~ 106 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALEL 106 (125)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHh
Confidence 666666666666666654
|
| >3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A* | Back alignment and structure |
|---|
Probab=98.27 E-value=0.0004 Score=70.20 Aligned_cols=173 Identities=8% Similarity=-0.021 Sum_probs=128.5
Q ss_pred cCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCC-ChHHHHHHHHHHhcccCCChhhHHHHHHHHHhc-C-CHHHHHH
Q 036072 293 KERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSK-LPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRV-K-NLMEAGR 369 (631)
Q Consensus 293 g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g-~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~-g-~~~~A~~ 369 (631)
+..++|+++++.++... +-+..+|+.--..+...| .+++++.+++.+....+.+..+|+.-...+.+. + +++++++
T Consensus 68 e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~nPKny~aW~hR~wlL~~l~~~~~~~EL~ 146 (349)
T 3q7a_A 68 EKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQNLKSYQVWHHRLLLLDRISPQDPVSEIE 146 (349)
T ss_dssp CCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHCCSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHhcCCChHHHHH
Confidence 44568899999998876 556677887767777777 599999999999888788889999888888777 7 8999999
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHH--------HHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHH
Q 036072 370 VWNEMIDKGFKPDVVAHNIMLEGLLKIGKRS--------DAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLIT 441 (631)
Q Consensus 370 l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~--------~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~ 441 (631)
+++.+.+.. .-|..+|+.-.-.+.+.|.++ ++++.++++.+.... +..+|+....
T Consensus 147 ~~~k~L~~d-pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~----------------N~SAW~~R~~ 209 (349)
T 3q7a_A 147 YIHGSLLPD-PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR----------------NNSAWGWRWY 209 (349)
T ss_dssp HHHHHTSSC-TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT----------------CHHHHHHHHH
T ss_pred HHHHHHHhC-CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC----------------CHHHHHHHHH
Confidence 999999864 337777776665555555555 888999888876433 4455555555
Q ss_pred HHhccCC-------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCCh
Q 036072 442 GFGNRRR-------MDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMP 484 (631)
Q Consensus 442 ~~~~~g~-------~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 484 (631)
.+.+.++ ++++++.+++....... |...|+.+-..+.+.|..
T Consensus 210 lL~~l~~~~~~~~~~~eELe~~~~aI~~~P~-n~SaW~Ylr~Ll~~~~~~ 258 (349)
T 3q7a_A 210 LRVSRPGAETSSRSLQDELIYILKSIHLIPH-NVSAWNYLRGFLKHFSLP 258 (349)
T ss_dssp HHTTSTTCCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCC
T ss_pred HHHhccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhcCCC
Confidence 6666655 67888888887776443 777777766666666653
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.26 E-value=2e-05 Score=67.55 Aligned_cols=96 Identities=7% Similarity=-0.053 Sum_probs=49.5
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHc
Q 036072 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGR 326 (631)
Q Consensus 247 ~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~ 326 (631)
.|...-..+.+.|++++|+..|++..+..+.+..+|..+..++...|++++|++.|+..++.. +.+...|..+..+|..
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHHH
Confidence 344444555555555555555555555555455555555555555555555555555555443 3334445555555555
Q ss_pred CCChHHHHHHHHHHhcc
Q 036072 327 SKLPKEAQLLFDKLKHR 343 (631)
Q Consensus 327 ~g~~~~A~~l~~~m~~~ 343 (631)
.|++++|...|++..+.
T Consensus 94 ~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 94 MREWSKAQRAYEDALQV 110 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 55555555555554443
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.25 E-value=1.1e-05 Score=74.74 Aligned_cols=157 Identities=10% Similarity=-0.020 Sum_probs=115.8
Q ss_pred hccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCC-CHHHHHHHHHHHHHcCC
Q 036072 444 GNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVR----SGFKP-TIHTYNMIMKSYFQTGN 518 (631)
Q Consensus 444 ~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p-~~~t~~~Li~~~~~~g~ 518 (631)
...|++++|.++++.+... .......+..+...+...|++++|...+++..+ .+..+ ...++..+...|...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 3468999999966555432 223567888889999999999999999998876 22222 35678888999999999
Q ss_pred HHHHHHHHHHHHHc----CCCC--CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--C-CCC--HHHHHHHHHHHHhcC
Q 036072 519 YEMGRKVWDEMIRR----GCCP--DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG--M-KAP--VLDYNKFAADLSRAG 587 (631)
Q Consensus 519 ~~~A~~~~~~m~~~----g~~p--~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g--~-~p~--~~~~~~li~~~~~~g 587 (631)
+++|...+++..+. +-.+ ....+..+...+...|++++|...+++..+.. . .+. ...+..+..++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 99999999987753 2111 24567788888999999999999999987431 1 111 234678889999999
Q ss_pred CHHHHHHHHHHHHh
Q 036072 588 RSYVLDELAQKMRF 601 (631)
Q Consensus 588 ~~~~A~~l~~~m~~ 601 (631)
++++|.+.+++...
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 99999998887643
|
| >2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1 | Back alignment and structure |
|---|
Probab=98.25 E-value=3.1e-05 Score=65.51 Aligned_cols=117 Identities=14% Similarity=0.053 Sum_probs=70.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 036072 469 LTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGL 548 (631)
Q Consensus 469 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~ 548 (631)
..+..+...+...|++++|...+++..+.. +.+...+..+..+|...|++++|...+++..+.... +...+..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPA-YSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCcc-CHHHHHHHHHHH
Confidence 345555556666666666666666666542 234556666666666666666666666666654322 455666666666
Q ss_pred HHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCC
Q 036072 549 ISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGR 588 (631)
Q Consensus 549 ~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~ 588 (631)
...|++++|...+++..+.. +.+...+..+..++.+.|+
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 66777777777776666543 2344555555555555554
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.21 E-value=8.3e-06 Score=80.86 Aligned_cols=98 Identities=9% Similarity=-0.022 Sum_probs=71.7
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 036072 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLEN 323 (631)
Q Consensus 244 ~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~ 323 (631)
+...+..+...+.+.|++++|...|++..+..+.+...+..+..++...|++++|+..++...+.. +.+...+..+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 81 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 81 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 355666777777777888888888887777766677777777777777777777777777777664 4456677777777
Q ss_pred HHcCCChHHHHHHHHHHhc
Q 036072 324 LGRSKLPKEAQLLFDKLKH 342 (631)
Q Consensus 324 ~~~~g~~~~A~~l~~~m~~ 342 (631)
|...|++++|...|++..+
T Consensus 82 ~~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 82 QLEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 7777777777777777543
|
| >3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1} | Back alignment and structure |
|---|
Probab=98.21 E-value=1.6e-05 Score=73.76 Aligned_cols=156 Identities=8% Similarity=-0.089 Sum_probs=111.4
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhC----CC-CcCHHHHHHHHHHHHcCCCh
Q 036072 256 GRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKY----KF-KAGVDTINCLLENLGRSKLP 330 (631)
Q Consensus 256 ~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~----g~-~~~~~~~~~Ll~~~~~~g~~ 330 (631)
...|++++|.++++.+.........++..+...+...|++++|+..++...+. +. .....++..+...|...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 45788888888555554322235568888888899999999999988887662 21 22345677788889999999
Q ss_pred HHHHHHHHHHhcc---cCCC----hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC---CCCC--HHHHHHHHHHHHHcCC
Q 036072 331 KEAQLLFDKLKHR---FTPN----LTTYTVLLGGWCRVKNLMEAGRVWNEMIDKG---FKPD--VVAHNIMLEGLLKIGK 398 (631)
Q Consensus 331 ~~A~~l~~~m~~~---~~p~----~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g---~~p~--~~ty~~li~~~~~~g~ 398 (631)
++|...+++..+. ...+ ...+..+...+...|++++|...+++..+.. -.+. ..++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 9999999886542 2212 3467888889999999999999998877431 1111 2345778888999999
Q ss_pred HHHHHHHHHHHHH
Q 036072 399 RSDAIKLFEVMKA 411 (631)
Q Consensus 399 ~~~A~~ll~~m~~ 411 (631)
+++|.+.+++..+
T Consensus 163 ~~~A~~~~~~al~ 175 (203)
T 3gw4_A 163 LLEAQQHWLRARD 175 (203)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 9999999988764
|
| >4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=98.21 E-value=4.8e-05 Score=65.20 Aligned_cols=95 Identities=15% Similarity=0.046 Sum_probs=53.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 036072 471 YNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLIS 550 (631)
Q Consensus 471 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 550 (631)
+...-..|.+.|++++|++.|++.++.. +.+...|..+..+|...|++++|+..|++.++.... +...|..+..+|..
T Consensus 16 ~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~ 93 (126)
T 4gco_A 16 EKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSK-FIKGYIRKAACLVA 93 (126)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHH
Confidence 3444445555666666666666555542 234555555556666666666666666665554322 45555555566666
Q ss_pred cCCHHHHHHHHHHHHHC
Q 036072 551 QDRSGEAYKYLEEMLEK 567 (631)
Q Consensus 551 ~g~~~~A~~ll~~m~~~ 567 (631)
.|++++|.+.|++.++.
T Consensus 94 ~~~~~~A~~~~~~al~l 110 (126)
T 4gco_A 94 MREWSKAQRAYEDALQV 110 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHH
Confidence 66666666666665553
|
| >2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=98.17 E-value=4.2e-05 Score=65.11 Aligned_cols=118 Identities=10% Similarity=-0.079 Sum_probs=84.9
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHH
Q 036072 278 SMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357 (631)
Q Consensus 278 ~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~ 357 (631)
+...+..+...+...|++++|+..|+...+.. +.+...+..+...|...|++++|...+++..+..+.+...+..+...
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~ 93 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAA 93 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHH
Confidence 45577777888888888888888888887764 44677777788888888888888888888776555667778888888
Q ss_pred HHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 036072 358 WCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIG 397 (631)
Q Consensus 358 ~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g 397 (631)
+.+.|++++|.+.|++..+... -+...+..+..++...|
T Consensus 94 ~~~~~~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 94 LEAMKDYTKAMDVYQKALDLDS-SCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCG-GGTHHHHHHHHHHHHHT
T ss_pred HHHHhhHHHHHHHHHHHHHhCC-CchHHHHHHHHHHHHhc
Confidence 8888888888888888776521 13344555555554443
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.14 E-value=3e-05 Score=78.98 Aligned_cols=130 Identities=8% Similarity=-0.008 Sum_probs=81.6
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHhCC
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS---------------METFKIAMNAFAAAKERKKAVAIFELMNKYK 309 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~---------------~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g 309 (631)
...|..+...+.+.|++++|...|++..+..+.+ ..+|..+..+|.+.|++++|+..|+..++..
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 226 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD 226 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 4567777778888888888888888887766543 3566666666666666666666666666553
Q ss_pred CCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 036072 310 FKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEA-GRVWNEMI 375 (631)
Q Consensus 310 ~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A-~~l~~~m~ 375 (631)
+.+...|..+..+|...|++++|...|++..+..+.+..++..+...+.+.|++++| ..+|..|.
T Consensus 227 -p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 227 -SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred -CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555666666666666666666666665554444555566666666666665555 23444443
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.14 E-value=2.5e-05 Score=69.06 Aligned_cols=96 Identities=11% Similarity=-0.069 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036072 504 HTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADL 583 (631)
Q Consensus 504 ~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~ 583 (631)
..+..+...+...|++++|...|+........ +...|..+..+|...|++++|+..|++.+... +.+...+..+..+|
T Consensus 22 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~ 99 (148)
T 2vgx_A 22 EQLYSLAFNQYQSGXYEDAHXVFQALCVLDHY-DSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECL 99 (148)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCChHHHHHHHHHHHHcCcc-cHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHH
Confidence 34445555556666666666666665554322 45555555566666666666666666665543 22344555566666
Q ss_pred HhcCCHHHHHHHHHHHHh
Q 036072 584 SRAGRSYVLDELAQKMRF 601 (631)
Q Consensus 584 ~~~g~~~~A~~l~~~m~~ 601 (631)
...|++++|.+.+++...
T Consensus 100 ~~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 100 LQXGELAEAESGLFLAQE 117 (148)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 666666666666665543
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.13 E-value=2.6e-05 Score=69.35 Aligned_cols=96 Identities=16% Similarity=0.040 Sum_probs=54.3
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHh
Q 036072 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCR 360 (631)
Q Consensus 281 ~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~ 360 (631)
.+..+...+...|++++|+..|+...+.. +.+...|..+..+|...|++++|...|++..+..+.+...|..+..+|.+
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~lg~~~~~ 116 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFHTGQCQLR 116 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHHHHHHHHH
Confidence 45555555555566666666665555543 33455555555555555666666666555554444455555555555666
Q ss_pred cCCHHHHHHHHHHHHHc
Q 036072 361 VKNLMEAGRVWNEMIDK 377 (631)
Q Consensus 361 ~g~~~~A~~l~~~m~~~ 377 (631)
.|++++|...|+...+.
T Consensus 117 lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 117 LKAPLKAKECFELVIQH 133 (151)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh
Confidence 66666666666555553
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.13 E-value=7.4e-05 Score=61.84 Aligned_cols=106 Identities=9% Similarity=-0.107 Sum_probs=61.3
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENL 324 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~ 324 (631)
...|..+...+...|++++|...|++.....+.+...+..+...+...|++++|...++...+.. +.+...+..+..++
T Consensus 4 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 4 VNELKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 34555566666666666666666666666555555566666666666666666666666665543 23455555555556
Q ss_pred HcCCChHHHHHHHHHHhcccCCChhhH
Q 036072 325 GRSKLPKEAQLLFDKLKHRFTPNLTTY 351 (631)
Q Consensus 325 ~~~g~~~~A~~l~~~m~~~~~p~~~~y 351 (631)
...|++++|...++...+..+.+...+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~ 109 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLK 109 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHH
Confidence 666666666666655544333333333
|
| >2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A* | Back alignment and structure |
|---|
Probab=98.13 E-value=9.9e-06 Score=71.76 Aligned_cols=93 Identities=14% Similarity=-0.064 Sum_probs=39.8
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 036072 318 NCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIG 397 (631)
Q Consensus 318 ~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g 397 (631)
..+...+...|++++|...|+......+.+...|..+..+|...|++++|+..|++..... +-+...|..+..+|...|
T Consensus 25 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g 103 (148)
T 2vgx_A 25 YSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLLQXG 103 (148)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHHHcC
Confidence 3333444444444444444444433333344444444444444444444444444444331 112333444444444444
Q ss_pred CHHHHHHHHHHHHH
Q 036072 398 KRSDAIKLFEVMKA 411 (631)
Q Consensus 398 ~~~~A~~ll~~m~~ 411 (631)
++++|.+.|+...+
T Consensus 104 ~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 104 ELAEAESGLFLAQE 117 (148)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 44444444444433
|
| >1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A | Back alignment and structure |
|---|
Probab=98.12 E-value=6.7e-05 Score=76.34 Aligned_cols=122 Identities=7% Similarity=-0.080 Sum_probs=68.5
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC
Q 036072 434 AVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPD--------------GLTYNALIKLMKIQKMPDEAVRIYKEMVRSGF 499 (631)
Q Consensus 434 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--------------~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~ 499 (631)
..+..+...|.+.|++++|...|++..+...... ...|..+..+|.+.|++++|+..|++.++..
T Consensus 148 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~- 226 (336)
T 1p5q_A 148 TIVKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD- 226 (336)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-
Confidence 3455566777777888888888887776532211 3455555555555555555555555555542
Q ss_pred CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 036072 500 KPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEA 557 (631)
Q Consensus 500 ~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 557 (631)
+.+...|..+..+|...|++++|...|++.++.... +...+..+..++...|+.++|
T Consensus 227 p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a 283 (336)
T 1p5q_A 227 SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQRIRRQLAR 283 (336)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 224455555555555555555555555555544222 344555555555555555554
|
| >2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli} | Back alignment and structure |
|---|
Probab=98.10 E-value=3.3e-05 Score=70.14 Aligned_cols=122 Identities=9% Similarity=0.075 Sum_probs=102.3
Q ss_pred HHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHH-HHhcCCH--HH
Q 036072 290 AAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG-WCRVKNL--ME 366 (631)
Q Consensus 290 ~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~-~~~~g~~--~~ 366 (631)
...|++++|+..++...+.. +.+...+..+...|...|++++|...|++..+..+.+...+..+... +...|++ ++
T Consensus 21 ~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~~~~~ 99 (177)
T 2e2e_A 21 ASQQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQHMTAQ 99 (177)
T ss_dssp C-----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTCCCHH
T ss_pred hhccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCcchHH
Confidence 45688899999999988765 56788999999999999999999999999887666688889899888 8899998 99
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Q 036072 367 AGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG 413 (631)
Q Consensus 367 A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g 413 (631)
|...|++..+.. +-+...+..+...|...|++++|...|+.+.+..
T Consensus 100 A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 100 TRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 999999999863 2357788889999999999999999999998853
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=98.07 E-value=7.2e-05 Score=63.59 Aligned_cols=95 Identities=12% Similarity=-0.092 Sum_probs=51.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 036072 246 RTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG 325 (631)
Q Consensus 246 ~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~ 325 (631)
..|..+...+.+.|++++|+..|++..+..+.+...|..+..++...|++++|+..|+...+.. +.+...|..+..++.
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 83 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQI 83 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 3444455555555666666666655555555455555555555555555555555555555543 333445555555555
Q ss_pred cCCChHHHHHHHHHHh
Q 036072 326 RSKLPKEAQLLFDKLK 341 (631)
Q Consensus 326 ~~g~~~~A~~l~~~m~ 341 (631)
..|++++|...|++..
T Consensus 84 ~~~~~~~A~~~~~~al 99 (126)
T 3upv_A 84 AVKEYASALETLDAAR 99 (126)
T ss_dssp HTTCHHHHHHHHHHHH
T ss_pred HHhCHHHHHHHHHHHH
Confidence 5555555555555543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.07 E-value=0.00014 Score=71.06 Aligned_cols=191 Identities=5% Similarity=-0.113 Sum_probs=105.6
Q ss_pred hcCChhHHHHHHHHHHHCCCCCHHHHHHH-------HHHHHHccCHHHHHHHHHHHHhC------------CC----C--
Q 036072 257 RARQFETMVSMLEEMGEKGLLSMETFKIA-------MNAFAAAKERKKAVAIFELMNKY------------KF----K-- 311 (631)
Q Consensus 257 ~~g~~~~A~~l~~~m~~~g~~~~~~~~~l-------i~~~~~~g~~~~A~~v~~~m~~~------------g~----~-- 311 (631)
..++...|.+.|.+..+..+-..+.|..+ ...+...++..+++..+..-.+. |. .
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~~ 97 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITYP 97 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEEE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCcccccccc
Confidence 56888888888888888888777777777 45555555555555555444441 10 0
Q ss_pred --cCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC--HHHHH
Q 036072 312 --AGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD--VVAHN 387 (631)
Q Consensus 312 --~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~ty~ 387 (631)
--....-.+...+...|++++|.++|+.+....+-+. ....+...+.+.+++++|+..|+...... .|. ...+.
T Consensus 98 v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p~~~-~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a~~ 175 (282)
T 4f3v_A 98 VTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGSEHL-VAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAAGV 175 (282)
T ss_dssp CSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTCHHH-HHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHHHH
T ss_pred cCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCchH-HHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHHHH
Confidence 0012223344556666777777777766654432233 44555556666677777777666443321 110 12455
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc
Q 036072 388 IMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEER 462 (631)
Q Consensus 388 ~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~ 462 (631)
.+-.++...|++++|+..|++.......|.... ........++.+.|+.++|..+|+++...
T Consensus 176 ~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~-------------da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 176 AHGVAAANLALFTEAERRLTEANDSPAGEACAR-------------AIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHH-------------HHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhcCCCCccccH-------------HHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 555666666666666666666653222132110 11222344455556666666666666654
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.06 E-value=6e-06 Score=76.92 Aligned_cols=131 Identities=14% Similarity=-0.040 Sum_probs=85.0
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcC---------------HHHHHHHHHHHHcCCChHHHHHHHHHHhccc
Q 036072 280 ETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAG---------------VDTINCLLENLGRSKLPKEAQLLFDKLKHRF 344 (631)
Q Consensus 280 ~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~---------------~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~ 344 (631)
..+..+...+...|++++|+..|+...+..-... ..++..+..+|...|++++|...++...+..
T Consensus 39 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~ 118 (198)
T 2fbn_A 39 FDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID 118 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC
Confidence 3455556666667777777777776665421111 2667777788888888888888888877666
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHHH
Q 036072 345 TPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAI-KLFEVMKA 411 (631)
Q Consensus 345 ~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~-~ll~~m~~ 411 (631)
+.+...|..+..+|...|++++|...|++..+.. +-+...+..+..++...++.+++. ..+..|..
T Consensus 119 p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 119 KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKLKEARKKDKLTFGGMFD 185 (198)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHC-----------
T ss_pred cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 6677788888888888888888888888887752 225566666667766666666555 44444443
|
| >3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A | Back alignment and structure |
|---|
Probab=98.06 E-value=5.3e-05 Score=67.29 Aligned_cols=98 Identities=9% Similarity=0.025 Sum_probs=89.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENL 324 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~ 324 (631)
...|..+...+.+.|++++|...|++.....+.+...|..+..+|...|++++|+..|+...+.. +.+...|..+..+|
T Consensus 36 ~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~ 114 (151)
T 3gyz_A 36 MDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQ 114 (151)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHH
Confidence 45677888889999999999999999999999899999999999999999999999999999876 55788899999999
Q ss_pred HcCCChHHHHHHHHHHhcc
Q 036072 325 GRSKLPKEAQLLFDKLKHR 343 (631)
Q Consensus 325 ~~~g~~~~A~~l~~~m~~~ 343 (631)
...|++++|...|++..+.
T Consensus 115 ~~lg~~~eA~~~~~~al~l 133 (151)
T 3gyz_A 115 LRLKAPLKAKECFELVIQH 133 (151)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHh
Confidence 9999999999999998764
|
| >1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.04 E-value=0.00023 Score=58.77 Aligned_cols=96 Identities=17% Similarity=0.098 Sum_probs=51.7
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 036072 470 TYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLI 549 (631)
Q Consensus 470 t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~ 549 (631)
.+..+...+...|++++|...|++..+.. +.+...+..+..+|...|++++|...+++..+.... +...+..+..++.
T Consensus 6 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~~a~~~~ 83 (118)
T 1elw_A 6 ELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALE 83 (118)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcc-cHHHHHHHHHHHH
Confidence 34444555555555555555555555432 224455555555555566666666666555554221 4455555555555
Q ss_pred HcCCHHHHHHHHHHHHHC
Q 036072 550 SQDRSGEAYKYLEEMLEK 567 (631)
Q Consensus 550 ~~g~~~~A~~ll~~m~~~ 567 (631)
..|++++|.+.+++..+.
T Consensus 84 ~~~~~~~A~~~~~~~~~~ 101 (118)
T 1elw_A 84 FLNRFEEAKRTYEEGLKH 101 (118)
T ss_dssp HTTCHHHHHHHHHHHHTT
T ss_pred HHhhHHHHHHHHHHHHHc
Confidence 566666666666555543
|
| >2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2 | Back alignment and structure |
|---|
Probab=98.03 E-value=1.9e-05 Score=78.27 Aligned_cols=97 Identities=13% Similarity=0.034 Sum_probs=55.1
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Q 036072 314 VDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGL 393 (631)
Q Consensus 314 ~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~ 393 (631)
...+..+...+...|++++|...|++..+..+.+...|..+...|.+.|++++|...+++..+.. .-+...+..+..+|
T Consensus 4 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (281)
T 2c2l_A 4 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQCQ 82 (281)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34445555555556666666666665554444455556666666666666666666666655532 22445555566666
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 036072 394 LKIGKRSDAIKLFEVMKA 411 (631)
Q Consensus 394 ~~~g~~~~A~~ll~~m~~ 411 (631)
...|++++|...|....+
T Consensus 83 ~~~g~~~~A~~~~~~al~ 100 (281)
T 2c2l_A 83 LEMESYDEAIANLQRAYS 100 (281)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 666666666666665544
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.03 E-value=5.5e-05 Score=66.09 Aligned_cols=97 Identities=6% Similarity=-0.141 Sum_probs=68.4
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 036072 246 RTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG 325 (631)
Q Consensus 246 ~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~ 325 (631)
..+..+...+.+.|++++|...|++....++.+...|..+..++...|++++|+..|+...+.. +.+...+..+..+|.
T Consensus 19 ~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 19 EQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 3445555666777777777777777777776677777777777777777777777777777664 445566666777777
Q ss_pred cCCChHHHHHHHHHHhcc
Q 036072 326 RSKLPKEAQLLFDKLKHR 343 (631)
Q Consensus 326 ~~g~~~~A~~l~~~m~~~ 343 (631)
..|++++|...|+...+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 777777777777776543
|
| >4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis} | Back alignment and structure |
|---|
Probab=98.02 E-value=0.00019 Score=70.29 Aligned_cols=185 Identities=14% Similarity=-0.007 Sum_probs=103.8
Q ss_pred cCCChHHHHHHHHHHhcccCCChhhHHHH-------HHHHHhcCCHHHHHHHHHHHHHcCCCCC----------------
Q 036072 326 RSKLPKEAQLLFDKLKHRFTPNLTTYTVL-------LGGWCRVKNLMEAGRVWNEMIDKGFKPD---------------- 382 (631)
Q Consensus 326 ~~g~~~~A~~l~~~m~~~~~p~~~~y~~L-------i~~~~~~g~~~~A~~l~~~m~~~g~~p~---------------- 382 (631)
..++...|.+.|.++.+..+-....|+.+ ...+.+.++..+++..+..-.. +.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 45677777777777666555556666666 3444444444444444443332 1111
Q ss_pred ------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHH
Q 036072 383 ------VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLL 456 (631)
Q Consensus 383 ------~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 456 (631)
...+-.+...+...|++++|.++|+.+...+ |+.. ....+...+.+.+++++|+..|
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~---------------~~~~~a~l~~~~~r~~dA~~~l 158 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHL---------------VAWMKAVVYGAAERWTDVIDQV 158 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHH---------------HHHHHHHHHHHTTCHHHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchH---------------HHHHHHHHHHHcCCHHHHHHHH
Confidence 1223345556667777777777777665432 3221 1112233556667777777777
Q ss_pred HHHHHcCCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036072 457 KEMEERGCPPD----GLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPT--IHTYNMIMKSYFQTGNYEMGRKVWDEMI 530 (631)
Q Consensus 457 ~~m~~~g~~p~----~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--~~t~~~Li~~~~~~g~~~~A~~~~~~m~ 530 (631)
+..... |+ ...+..+-.++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++.
T Consensus 159 ~~a~~~---~d~~~~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~ 235 (282)
T 4f3v_A 159 KSAGKW---PDKFLAGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQ 235 (282)
T ss_dssp TTGGGC---SCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHhhcc---CCcccHHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 643322 22 22455566667777777777777777664332243 2345555666677777777777777776
Q ss_pred Hc
Q 036072 531 RR 532 (631)
Q Consensus 531 ~~ 532 (631)
..
T Consensus 236 a~ 237 (282)
T 4f3v_A 236 TT 237 (282)
T ss_dssp HH
T ss_pred hc
Confidence 65
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=98.02 E-value=9.7e-05 Score=66.18 Aligned_cols=99 Identities=10% Similarity=-0.014 Sum_probs=67.8
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036072 467 DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIG 546 (631)
Q Consensus 467 ~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~ 546 (631)
+...+..+...+...|++++|+..|++.++.. +-+...|..+..+|...|++++|...|++.++.... +...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPK-YSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHH
Confidence 34456666667777777777777777777653 235666777777777777777777777777765432 5666777777
Q ss_pred HHHHcCCHHHHHHHHHHHHHC
Q 036072 547 GLISQDRSGEAYKYLEEMLEK 567 (631)
Q Consensus 547 ~~~~~g~~~~A~~ll~~m~~~ 567 (631)
+|...|++++|.+.|++.++.
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHh
Confidence 777777777777777777654
|
| >2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A | Back alignment and structure |
|---|
Probab=98.00 E-value=0.00017 Score=62.85 Aligned_cols=92 Identities=10% Similarity=-0.102 Sum_probs=45.6
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 036072 473 ALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQD 552 (631)
Q Consensus 473 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 552 (631)
.+...+.+.|++++|...|++..+.. +.+...|..+..+|...|++++|...|++....... +...|..+..+|...|
T Consensus 23 ~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g 100 (142)
T 2xcb_A 23 ALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMDIN-EPRFPFHAAECHLQLG 100 (142)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCC-CcHHHHHHHHHHHHcC
Confidence 33444455555555555555555432 224444555555555555555555555555544322 3344444555555555
Q ss_pred CHHHHHHHHHHHHH
Q 036072 553 RSGEAYKYLEEMLE 566 (631)
Q Consensus 553 ~~~~A~~ll~~m~~ 566 (631)
++++|.+.|++.++
T Consensus 101 ~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 101 DLDGAESGFYSARA 114 (142)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 55555555555443
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=98.00 E-value=9e-05 Score=63.75 Aligned_cols=97 Identities=9% Similarity=-0.022 Sum_probs=63.9
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 036072 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLEN 323 (631)
Q Consensus 244 ~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~ 323 (631)
+...|..+...+...|++++|...|++.....+.+...+..+..++...|++++|+..|+...+.. +.+...+..+..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHH
Confidence 456666666677777777777777777666666566666666666667777777776666666654 3355566666666
Q ss_pred HHcCCChHHHHHHHHHHh
Q 036072 324 LGRSKLPKEAQLLFDKLK 341 (631)
Q Consensus 324 ~~~~g~~~~A~~l~~~m~ 341 (631)
|...|++++|...|++..
T Consensus 87 ~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 666666666666666654
|
| >2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=98.00 E-value=7.1e-05 Score=69.46 Aligned_cols=132 Identities=13% Similarity=-0.020 Sum_probs=104.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCH----------------HHHHHHHHHHHHccCHHHHHHHHHHHHhC
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSM----------------ETFKIAMNAFAAAKERKKAVAIFELMNKY 308 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~----------------~~~~~li~~~~~~g~~~~A~~v~~~m~~~ 308 (631)
...|..+...+.+.|++++|...|++..+....++ .++..+..++...|++++|+..++...+.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 45567778888899999999999999988655333 78888999999999999999999999987
Q ss_pred CCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHH-HHHHHHHHc
Q 036072 309 KFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAG-RVWNEMIDK 377 (631)
Q Consensus 309 g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~-~l~~~m~~~ 377 (631)
. +.+...+..+..+|...|++++|...|++..+..+.+..++..+...+...++.+++. ..|..|...
T Consensus 118 ~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~f~~ 186 (198)
T 2fbn_A 118 D-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNKLKEARKKDKLTFGGMFDK 186 (198)
T ss_dssp S-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHC------------
T ss_pred C-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 5 5678889999999999999999999999988766667888888888888888777776 555555544
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00067 Score=70.97 Aligned_cols=170 Identities=10% Similarity=-0.022 Sum_probs=100.5
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHH---
Q 036072 386 HNIMLEGLLKIGKRSDAIKLFEVMKAK-GPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEE--- 461 (631)
Q Consensus 386 y~~li~~~~~~g~~~~A~~ll~~m~~~-g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~--- 461 (631)
+..+...|...|++++|.+++..+.+. +..++..+ ...+.+.+-..+...|+++.|..++.....
T Consensus 58 l~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 126 (434)
T 4b4t_Q 58 ILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSKT-----------VKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAK 126 (434)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHHH-----------HHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchHH-----------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHH
Confidence 455666777777777777777665432 11111111 011233334445556777777777766543
Q ss_pred -cCCCCC-HHHHHHHHHHHHhcCChhHHHHHHHHHHHC--CC--CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc--
Q 036072 462 -RGCPPD-GLTYNALIKLMKIQKMPDEAVRIYKEMVRS--GF--KP-TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR-- 532 (631)
Q Consensus 462 -~g~~p~-~~t~~~li~~~~~~g~~~~A~~l~~~m~~~--g~--~p-~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~-- 532 (631)
.+..+. ..++..+...|...|++++|..+++++... +. ++ ...++..++..|...|++++|..++++....
T Consensus 127 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~ 206 (434)
T 4b4t_Q 127 REKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAAN 206 (434)
T ss_dssp HSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhh
Confidence 222222 346667777888888888888888776642 11 11 2456777788888888888888888776542
Q ss_pred CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 533 GCCPD----DNSYTVLIGGLISQDRSGEAYKYLEEMLE 566 (631)
Q Consensus 533 g~~p~----~~t~~~li~~~~~~g~~~~A~~ll~~m~~ 566 (631)
.+..+ ...+..+...+...|++++|...|.+..+
T Consensus 207 ~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 207 SIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp HSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred cCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 11111 23455555666677888888777766643
|
| >3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus} | Back alignment and structure |
|---|
Probab=97.97 E-value=0.00012 Score=65.53 Aligned_cols=98 Identities=12% Similarity=-0.031 Sum_probs=61.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENL 324 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~ 324 (631)
...|..+...+.+.|++++|+..|++..+..+.+...|..+..+|...|++++|+..|+...+.. +.+...|..+..+|
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 89 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGLAR 89 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 44566666666666777777777766666665566666666666666666666666666666554 33455666666666
Q ss_pred HcCCChHHHHHHHHHHhcc
Q 036072 325 GRSKLPKEAQLLFDKLKHR 343 (631)
Q Consensus 325 ~~~g~~~~A~~l~~~m~~~ 343 (631)
...|++++|...|++..+.
T Consensus 90 ~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 90 FDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHccCHHHHHHHHHHHHHh
Confidence 6666666666666665443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.96 E-value=7.9e-05 Score=61.09 Aligned_cols=99 Identities=11% Similarity=0.057 Sum_probs=71.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCc--CHHHHHHHHH
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKA--GVDTINCLLE 322 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~--~~~~~~~Ll~ 322 (631)
...|..+...+...|++++|...|++..+..+.+..++..+..++...|++++|++.|+...+.. +. +...+..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 44566667777778888888888888777766667777777777777778888877777777654 33 5667777777
Q ss_pred HHHcC-CChHHHHHHHHHHhccc
Q 036072 323 NLGRS-KLPKEAQLLFDKLKHRF 344 (631)
Q Consensus 323 ~~~~~-g~~~~A~~l~~~m~~~~ 344 (631)
++... |++++|.+.++......
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~~ 107 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLEH 107 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGGC
T ss_pred HHHHHhCCHHHHHHHHHHHhhcc
Confidence 77777 77777777777766543
|
| >3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.94 E-value=0.00026 Score=60.02 Aligned_cols=96 Identities=14% Similarity=0.021 Sum_probs=62.2
Q ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHh
Q 036072 281 TFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCR 360 (631)
Q Consensus 281 ~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~ 360 (631)
.+..+...+...|++++|+..|+...+.. +.+...|..+..+|.+.|++++|...|++..+..+.+...|..+..++..
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 45555666666777777777777666654 34566666666666667777777776666655545556666666666666
Q ss_pred cCCHHHHHHHHHHHHHc
Q 036072 361 VKNLMEAGRVWNEMIDK 377 (631)
Q Consensus 361 ~g~~~~A~~l~~~m~~~ 377 (631)
.|++++|...|++..+.
T Consensus 85 ~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 85 VKEYASALETLDAARTK 101 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHh
Confidence 66666666666666553
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00011 Score=62.19 Aligned_cols=95 Identities=12% Similarity=0.049 Sum_probs=43.8
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCC-------hhhHHHH
Q 036072 282 FKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPN-------LTTYTVL 354 (631)
Q Consensus 282 ~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~-------~~~y~~L 354 (631)
+..+...+...|++++|+..|+...+.. +.+...+..+...|...|++++|...+++..+..+.+ ..+|..+
T Consensus 7 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~l 85 (131)
T 1elr_A 7 EKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARI 85 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHHH
Confidence 3334444444444444444444444332 2234444444444444444444444444443221111 3445555
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHc
Q 036072 355 LGGWCRVKNLMEAGRVWNEMIDK 377 (631)
Q Consensus 355 i~~~~~~g~~~~A~~l~~~m~~~ 377 (631)
...+.+.|++++|.+.|+...+.
T Consensus 86 a~~~~~~~~~~~A~~~~~~~~~~ 108 (131)
T 1elr_A 86 GNSYFKEEKYKDAIHFYNKSLAE 108 (131)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHh
Confidence 55555556666666666555553
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.91 E-value=0.00022 Score=61.85 Aligned_cols=107 Identities=7% Similarity=-0.076 Sum_probs=66.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---HHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHH
Q 036072 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS---METFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCL 320 (631)
Q Consensus 244 ~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~---~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~L 320 (631)
+...|..+...+...|++++|...|++..+..+.+ ..++..+..++...|++++|+..++...+.. +.+...+..+
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~ 105 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALYRR 105 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHHHH
Confidence 46667777777777777777777777777665433 4566666666666666666666666666543 3345555556
Q ss_pred HHHHHcCCChHHHHHHHHHHhcccCCChhhH
Q 036072 321 LENLGRSKLPKEAQLLFDKLKHRFTPNLTTY 351 (631)
Q Consensus 321 l~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y 351 (631)
..+|...|++++|...|++..+..+.+...+
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 136 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEPKNKVFQ 136 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSCHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHH
Confidence 6666666666666666666554333333333
|
| >1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00013 Score=61.69 Aligned_cols=112 Identities=8% Similarity=0.022 Sum_probs=93.0
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCC--CcC----HHHHH
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKF--KAG----VDTIN 318 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~--~~~----~~~~~ 318 (631)
...|..+...+...|++++|...|++.....+.+..++..+...+...|++++|+..++...+... .++ ..++.
T Consensus 4 ~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 4 ALKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 456788889999999999999999999988877888999999999999999999999999987631 112 77888
Q ss_pred HHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHH
Q 036072 319 CLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGG 357 (631)
Q Consensus 319 ~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~ 357 (631)
.+..+|...|++++|...|+...+.. |+...+..+...
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~l~~~ 121 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEH-RTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC-CCHHHHHHHHHH
Confidence 89999999999999999999987643 466555555443
|
| >2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens} | Back alignment and structure |
|---|
Probab=97.88 E-value=0.00049 Score=59.57 Aligned_cols=98 Identities=10% Similarity=-0.047 Sum_probs=63.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHH
Q 036072 467 DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPT----IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYT 542 (631)
Q Consensus 467 ~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~----~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~ 542 (631)
+...+..+...+...|++++|...|++..+. .|+ ...+..+..+|...|++++|...+++..+.... +...|.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGG-DVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSC-CHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCcc-CHHHHH
Confidence 4555666666666777777777777776654 344 456666666677777777777777766654322 456666
Q ss_pred HHHHHHHHcCCHHHHHHHHHHHHHC
Q 036072 543 VLIGGLISQDRSGEAYKYLEEMLEK 567 (631)
Q Consensus 543 ~li~~~~~~g~~~~A~~ll~~m~~~ 567 (631)
.+..+|...|++++|...|++..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 6666677777777777777766654
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.85 E-value=0.00032 Score=59.95 Aligned_cols=95 Identities=16% Similarity=0.160 Sum_probs=44.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCC--CCC----HHHHHHH
Q 036072 471 YNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGC--CPD----DNSYTVL 544 (631)
Q Consensus 471 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~--~p~----~~t~~~l 544 (631)
+..+-..+.+.|++++|+..|++.++.. +-+...|+.+..+|...|++++|++.+++.++... .++ ..+|..+
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 3334444455555555555555554432 22344455555555555555555555555443210 001 1234444
Q ss_pred HHHHHHcCCHHHHHHHHHHHHH
Q 036072 545 IGGLISQDRSGEAYKYLEEMLE 566 (631)
Q Consensus 545 i~~~~~~g~~~~A~~ll~~m~~ 566 (631)
..++...|++++|++.|++.+.
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 4455555555555555555544
|
| >3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B* | Back alignment and structure |
|---|
Probab=97.84 E-value=0.00028 Score=60.54 Aligned_cols=98 Identities=13% Similarity=0.035 Sum_probs=47.2
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 036072 313 GVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEG 392 (631)
Q Consensus 313 ~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~ 392 (631)
+...+..+...+...|++++|...|+......+.+...|..+..++...|++++|...++...+.. +.+...|..+..+
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 86 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 86 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHH
Confidence 344444444444455555555555554443333344445555555555555555555555554432 1134444455555
Q ss_pred HHHcCCHHHHHHHHHHHHH
Q 036072 393 LLKIGKRSDAIKLFEVMKA 411 (631)
Q Consensus 393 ~~~~g~~~~A~~ll~~m~~ 411 (631)
+...|++++|...|....+
T Consensus 87 ~~~~~~~~~A~~~~~~a~~ 105 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAYS 105 (137)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHHH
Confidence 5555555555555554443
|
| >2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis} | Back alignment and structure |
|---|
Probab=97.83 E-value=0.00015 Score=59.36 Aligned_cols=98 Identities=14% Similarity=-0.034 Sum_probs=66.9
Q ss_pred HHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCC--CHHHHHHHHH
Q 036072 314 VDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKP--DVVAHNIMLE 391 (631)
Q Consensus 314 ~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p--~~~ty~~li~ 391 (631)
...+..+...+...|++++|...|++..+..+.+...|..+...+...|++++|...|++..+.. .. +...+..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~ 84 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKAD 84 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHH
Confidence 34455566666777777777777777665555566677777777777777777777777777642 22 4666777777
Q ss_pred HHHHc-CCHHHHHHHHHHHHHc
Q 036072 392 GLLKI-GKRSDAIKLFEVMKAK 412 (631)
Q Consensus 392 ~~~~~-g~~~~A~~ll~~m~~~ 412 (631)
++... |++++|.+.+....+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~ 106 (112)
T 2kck_A 85 ALRYIEGKEVEAEIAEARAKLE 106 (112)
T ss_dssp HHTTCSSCSHHHHHHHHHHGGG
T ss_pred HHHHHhCCHHHHHHHHHHHhhc
Confidence 77777 7777777777777664
|
| >4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.81 E-value=0.0011 Score=69.19 Aligned_cols=199 Identities=9% Similarity=0.007 Sum_probs=141.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCC-----------------HHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCC-cC
Q 036072 252 MSILGRARQFETMVSMLEEMGEKGLLS-----------------METFKIAMNAFAAAKERKKAVAIFELMNKYKFK-AG 313 (631)
Q Consensus 252 i~~~~~~g~~~~A~~l~~~m~~~g~~~-----------------~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~-~~ 313 (631)
.+.+.+.|++++|++.|..+.+..... ...+..+...|...|++++|.+.+..+.+.--. .+
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 455778899999999999998754311 125788899999999999999999887653111 11
Q ss_pred H----HHHHHHHHHHHcCCChHHHHHHHHHHhc-----ccC-CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc--CC--
Q 036072 314 V----DTINCLLENLGRSKLPKEAQLLFDKLKH-----RFT-PNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK--GF-- 379 (631)
Q Consensus 314 ~----~~~~~Ll~~~~~~g~~~~A~~l~~~m~~-----~~~-p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~--g~-- 379 (631)
. .+.+.+-..+...|+.+.|..++..... ... .-..++..+...|...|++++|..+++++... +.
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 1 1233333444566899999999988643 111 22457888999999999999999999988753 11
Q ss_pred CC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHH
Q 036072 380 KP-DVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKG--PSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLL 456 (631)
Q Consensus 380 ~p-~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g--~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~ 456 (631)
.+ ...+|..++..|...|++++|..+++...... ...+... -...+..+...+...+++++|...|
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~-----------~~~~~~~~g~~~~~~~~y~~A~~~~ 239 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQT-----------VAELDLMSGILHCEDKDYKTAFSYF 239 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHH-----------HHHHHHHHHHHTTSSSCHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHH-----------HHHHHHHHHHHHHHHHhHHHHHHHH
Confidence 11 24578889999999999999999998876421 1111111 1234566778888899999999888
Q ss_pred HHHHH
Q 036072 457 KEMEE 461 (631)
Q Consensus 457 ~~m~~ 461 (631)
.+..+
T Consensus 240 ~~a~~ 244 (434)
T 4b4t_Q 240 FESFE 244 (434)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 77654
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.79 E-value=0.00013 Score=63.99 Aligned_cols=96 Identities=10% Similarity=-0.018 Sum_probs=46.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-CC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHC----CCCC-CHH
Q 036072 435 VYTCLITGFGNRRRMDIVYDLLKEMEERGCP-PD----GLTYNALIKLMKIQKMPDEAVRIYKEMVRS----GFKP-TIH 504 (631)
Q Consensus 435 ~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~~li~~~~~~g~~~~A~~l~~~m~~~----g~~p-~~~ 504 (631)
++..+...|...|++++|...+.+..+.... .+ ..++..+...+...|++++|...+++..+. +..+ ...
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 3445556666667777777666665432100 11 124444555555556666666555554431 1000 023
Q ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036072 505 TYNMIMKSYFQTGNYEMGRKVWDEMI 530 (631)
Q Consensus 505 t~~~Li~~~~~~g~~~~A~~~~~~m~ 530 (631)
.+..+..+|...|++++|...+++..
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~ 116 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHL 116 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHH
Confidence 34444444555555555555554443
|
| >3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.78 E-value=0.00016 Score=63.53 Aligned_cols=133 Identities=12% Similarity=0.026 Sum_probs=102.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-CC----H
Q 036072 469 LTYNALIKLMKIQKMPDEAVRIYKEMVRSGFK-PT----IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCC-PD----D 538 (631)
Q Consensus 469 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~----~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~-p~----~ 538 (631)
.++..+...+...|++++|...+++..+..-. .+ ..++..+...|...|++++|...+++..+.... .+ .
T Consensus 10 ~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 89 (164)
T 3ro3_A 10 RAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEA 89 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHH
Confidence 46777888899999999999999988753111 11 247888999999999999999999987753110 12 4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036072 539 NSYTVLIGGLISQDRSGEAYKYLEEMLEK----GMKA-PVLDYNKFAADLSRAGRSYVLDELAQKMRF 601 (631)
Q Consensus 539 ~t~~~li~~~~~~g~~~~A~~ll~~m~~~----g~~p-~~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 601 (631)
.++..+...+...|++++|.+.+++..+. +..+ ....+..+...+...|++++|.+.+++...
T Consensus 90 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 90 QSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 56778888899999999999999988753 2111 134578889999999999999999988654
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.77 E-value=0.00058 Score=57.78 Aligned_cols=92 Identities=10% Similarity=-0.033 Sum_probs=48.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCH---HHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcC---HHHHHHHHHHH
Q 036072 251 MMSILGRARQFETMVSMLEEMGEKGLLSM---ETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAG---VDTINCLLENL 324 (631)
Q Consensus 251 li~~~~~~g~~~~A~~l~~~m~~~g~~~~---~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~---~~~~~~Ll~~~ 324 (631)
+...+...|++++|...|+.+.+..+.+. .++..+..++...|++++|+..|+...+.. +.+ ...+..+..+|
T Consensus 8 ~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 8 VAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHHHHH
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHH
Confidence 33445555666666666666555444322 455555555555555555555555555442 112 34444455555
Q ss_pred HcCCChHHHHHHHHHHhcc
Q 036072 325 GRSKLPKEAQLLFDKLKHR 343 (631)
Q Consensus 325 ~~~g~~~~A~~l~~~m~~~ 343 (631)
...|++++|...|+.+.+.
T Consensus 87 ~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHH
Confidence 5555555555555555443
|
| >4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.74 E-value=0.00026 Score=60.52 Aligned_cols=96 Identities=18% Similarity=0.122 Sum_probs=51.4
Q ss_pred HHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCC----HHHHHHHH
Q 036072 317 INCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKG--FKPD----VVAHNIML 390 (631)
Q Consensus 317 ~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g--~~p~----~~ty~~li 390 (631)
+..+...+.+.|++++|...|++..+..+.+...|+.+..+|.+.|++++|++.+++..+.. ..++ ..+|..+-
T Consensus 11 ~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg 90 (127)
T 4gcn_A 11 EKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRAG 90 (127)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHHH
Confidence 34445555555555555555555544444445555555555556666666655555554321 1111 12445555
Q ss_pred HHHHHcCCHHHHHHHHHHHHHc
Q 036072 391 EGLLKIGKRSDAIKLFEVMKAK 412 (631)
Q Consensus 391 ~~~~~~g~~~~A~~ll~~m~~~ 412 (631)
.++...|++++|++.|+.....
T Consensus 91 ~~~~~~~~~~~A~~~~~kal~~ 112 (127)
T 4gcn_A 91 NAFQKQNDLSLAVQWFHRSLSE 112 (127)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhh
Confidence 5666666677776666666553
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.72 E-value=0.017 Score=57.91 Aligned_cols=149 Identities=8% Similarity=-0.019 Sum_probs=79.7
Q ss_pred hHHHHHHHHHHhcccCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-HHHHHHHH
Q 036072 330 PKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVK--NLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGK-RSDAIKLF 406 (631)
Q Consensus 330 ~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g--~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~-~~~A~~ll 406 (631)
+++++.+++.+....+-+..+|+.-.-.+.+.+ .+++++.+++.+.+.. .-|..+|+.-.-.+...|. ++++++.+
T Consensus 90 l~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~ 168 (331)
T 3dss_A 90 VKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFT 168 (331)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHH
Confidence 345555555555555555666665555555555 3666666666666653 2255566555555555665 46677776
Q ss_pred HHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhcc--------------CCHHHHHHHHHHHHHcCCCCCHHHHH
Q 036072 407 EVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNR--------------RRMDIVYDLLKEMEERGCPPDGLTYN 472 (631)
Q Consensus 407 ~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~--------------g~~~~A~~l~~~m~~~g~~p~~~t~~ 472 (631)
+.+.+..+. |... |+.....+.+. +.++++++.+......... |...|+
T Consensus 169 ~~~I~~~p~-N~SA---------------W~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~ 231 (331)
T 3dss_A 169 DSLITRNFS-NYSS---------------WHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPN-DQSAWF 231 (331)
T ss_dssp HHHHHHCSC-CHHH---------------HHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTT-CHHHHH
T ss_pred HHHHHHCCC-CHHH---------------HHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCC-CHHHHH
Confidence 666664322 2222 22221111111 3467777777777765433 666666
Q ss_pred HHHHHHHhc-----------CChhHHHHHHHHHHH
Q 036072 473 ALIKLMKIQ-----------KMPDEAVRIYKEMVR 496 (631)
Q Consensus 473 ~li~~~~~~-----------g~~~~A~~l~~~m~~ 496 (631)
.+-..+.+. +.++++++.++++.+
T Consensus 232 Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle 266 (331)
T 3dss_A 232 YHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE 266 (331)
T ss_dssp HHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh
Confidence 554444433 234455555555554
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.69 E-value=0.00028 Score=59.74 Aligned_cols=93 Identities=8% Similarity=-0.052 Sum_probs=56.7
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCC
Q 036072 249 NSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSK 328 (631)
Q Consensus 249 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g 328 (631)
..+...+.+.|++++|+..|++..+..+.+...+..+..++...|++++|+..|+...+.. +.+...+..+..+|...|
T Consensus 21 ~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~~~g 99 (121)
T 1hxi_A 21 MEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEH 99 (121)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcC
Confidence 3444555666666666666666666666566666666666666666666666666666553 334555555666666666
Q ss_pred ChHHHHHHHHHHhc
Q 036072 329 LPKEAQLLFDKLKH 342 (631)
Q Consensus 329 ~~~~A~~l~~~m~~ 342 (631)
++++|...|++..+
T Consensus 100 ~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 100 NANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHH
Confidence 66666666665543
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.67 E-value=0.0004 Score=73.79 Aligned_cols=123 Identities=11% Similarity=-0.038 Sum_probs=68.1
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC---------------HHHHHHHHHHHHHccCHHHHHHHHHHHHhCC
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLS---------------METFKIAMNAFAAAKERKKAVAIFELMNKYK 309 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~---------------~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g 309 (631)
...|..+...+.+.|++++|...|++..+....+ ..+|..+..+|.+.|++++|+..|+..++..
T Consensus 268 a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~ 347 (457)
T 1kt0_A 268 AAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGLD 347 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC
Confidence 3456677777777888888888887777654432 3455555555555555555555555555543
Q ss_pred CCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHH
Q 036072 310 FKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAG 368 (631)
Q Consensus 310 ~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~ 368 (631)
+.+...|..+..+|...|++++|...|++..+..+.+..++..+..++.+.++.+++.
T Consensus 348 -p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~ 405 (457)
T 1kt0_A 348 -SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQKKAKEHNERD 405 (457)
T ss_dssp -TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHHHHHHHHHHH
T ss_pred -CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 3344555555555555555555555555554443334445555555555555544443
|
| >3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A* | Back alignment and structure |
|---|
Probab=97.65 E-value=0.063 Score=53.74 Aligned_cols=232 Identities=9% Similarity=0.055 Sum_probs=146.2
Q ss_pred hcCChh-HHHHHHHHHHHCCCCCHHHHHHHHHHHHHccC----------HHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 036072 257 RARQFE-TMVSMLEEMGEKGLLSMETFKIAMNAFAAAKE----------RKKAVAIFELMNKYKFKAGVDTINCLLENLG 325 (631)
Q Consensus 257 ~~g~~~-~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~----------~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~ 325 (631)
+.|.+. +|+.+++.+...++-+..+|+.=-..+...+. +++++.+++.+.... +-+..+|+.-.-++.
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~-PKny~aW~hR~wlL~ 119 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLS 119 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHh
Confidence 345544 78888888888887666666544333333332 678888888888765 567778887666666
Q ss_pred cCC--ChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc------
Q 036072 326 RSK--LPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKN-LMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKI------ 396 (631)
Q Consensus 326 ~~g--~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~------ 396 (631)
+.+ .++++..+++.+.+..+-|..+|+--.-.+...|. ++++++.++.+.+..+. |..+|+.....+.+.
T Consensus 120 ~l~~~~~~~EL~~~~k~l~~dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~-N~SAW~~R~~ll~~l~~~~~~ 198 (331)
T 3dss_A 120 RLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDS 198 (331)
T ss_dssp HCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSC-CHHHHHHHHHHHHHHSCCC--
T ss_pred ccCcccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHhhhcccc
Confidence 666 48899999999988777788888888888888888 68999999999987543 777787766666554
Q ss_pred --------CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCH
Q 036072 397 --------GKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDG 468 (631)
Q Consensus 397 --------g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~ 468 (631)
+.++++++.+......... |...|+.+-..+...... +.+ .-.+.+.++++++.++++.+.. ||.
T Consensus 199 ~~~~~~~~~~~~eEle~~~~ai~~~P~-d~SaW~Y~r~ll~~~~~~--~~~--~~~~~~~l~~el~~~~elle~~--pd~ 271 (331)
T 3dss_A 199 GPQGRLPENVLLKELELVQNAFFTDPN-DQSAWFYHRWLLGAGSGR--CEL--SVEKSTVLQSELESCKELQELE--PEN 271 (331)
T ss_dssp ----CCCHHHHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHSSSCG--GGC--CHHHHHHHHHHHHHHHHHHHHC--TTC
T ss_pred ccccccchHHHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccCc--ccc--chHHHHHHHHHHHHHHHHHhhC--ccc
Confidence 4578888888888775322 333333221111111000 000 0001145788999999988763 443
Q ss_pred -HHHHHHHH---HHHhcCChhHHHHHHHHHHHC
Q 036072 469 -LTYNALIK---LMKIQKMPDEAVRIYKEMVRS 497 (631)
Q Consensus 469 -~t~~~li~---~~~~~g~~~~A~~l~~~m~~~ 497 (631)
..+..++. +....+..+++...+.++++.
T Consensus 272 ~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~~ 304 (331)
T 3dss_A 272 KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV 304 (331)
T ss_dssp HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhhcccccHHHHHHHHHHHHHh
Confidence 22222221 111345555666666666653
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.65 E-value=0.00013 Score=78.08 Aligned_cols=120 Identities=8% Similarity=-0.121 Sum_probs=95.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChH
Q 036072 252 MSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPK 331 (631)
Q Consensus 252 i~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~ 331 (631)
...+.+.|++++|...|++..+..+.+..++..+..+|...|++++|++.++...+.. +.+..++..+..+|...|+++
T Consensus 13 g~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~ 91 (477)
T 1wao_1 13 ANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFR 91 (477)
T ss_dssp SSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHH
T ss_pred HHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 3445677899999999999988887788899999999999999999999999998875 557788888899999999999
Q ss_pred HHHHHHHHHhcccCCChhhHHHHHHH--HHhcCCHHHHHHHHH
Q 036072 332 EAQLLFDKLKHRFTPNLTTYTVLLGG--WCRVKNLMEAGRVWN 372 (631)
Q Consensus 332 ~A~~l~~~m~~~~~p~~~~y~~Li~~--~~~~g~~~~A~~l~~ 372 (631)
+|.+.|++..+..+.+...+..+..+ +.+.|++++|++.++
T Consensus 92 eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 92 AALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999998876555556666666666 788899999999888
|
| >1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3 | Back alignment and structure |
|---|
Probab=97.64 E-value=0.0004 Score=74.28 Aligned_cols=121 Identities=10% Similarity=0.050 Sum_probs=95.7
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC
Q 036072 439 LITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN 518 (631)
Q Consensus 439 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~ 518 (631)
+...+.+.|++++|.+.|++..+... -+...|..+..+|.+.|++++|++.+++..+.. +-+...+..+..+|...|+
T Consensus 12 lg~~~~~~g~~~~A~~~~~~Al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 12 QANDYFKAKDYENAIKFYSQAIELNP-SNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSTTTTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCC
Confidence 34456778999999999999988633 368899999999999999999999999999874 3467889999999999999
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHHcCCHHHHHHHHH
Q 036072 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGG--LISQDRSGEAYKYLE 562 (631)
Q Consensus 519 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~--~~~~g~~~~A~~ll~ 562 (631)
+++|.+.|++..+.... +...+..+..+ +.+.|++++|.+.++
T Consensus 90 ~~eA~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 90 FRAALRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 99999999999886432 33455555555 888899999999988
|
| >1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=97.64 E-value=0.00034 Score=59.24 Aligned_cols=91 Identities=11% Similarity=-0.079 Sum_probs=49.2
Q ss_pred HHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 036072 320 LLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKR 399 (631)
Q Consensus 320 Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~ 399 (631)
+...+.+.|++++|...|++..+..+.+...|..+..++...|++++|+..|++..+... -+...+..+..++...|++
T Consensus 23 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~~~~g~~ 101 (121)
T 1hxi_A 23 EGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTNEHNA 101 (121)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCH
Confidence 344455555555555555555544444555555555555555555555555555555421 1344555555555555666
Q ss_pred HHHHHHHHHHHH
Q 036072 400 SDAIKLFEVMKA 411 (631)
Q Consensus 400 ~~A~~ll~~m~~ 411 (631)
++|+..++...+
T Consensus 102 ~~A~~~~~~al~ 113 (121)
T 1hxi_A 102 NAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHC
T ss_pred HHHHHHHHHHHH
Confidence 666666555544
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.63 E-value=0.00086 Score=59.68 Aligned_cols=98 Identities=16% Similarity=0.197 Sum_probs=53.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHC--------C---------CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 469 LTYNALIKLMKIQKMPDEAVRIYKEMVRS--------G---------FKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIR 531 (631)
Q Consensus 469 ~t~~~li~~~~~~g~~~~A~~l~~~m~~~--------g---------~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~ 531 (631)
..+......+.+.|++++|+..|.+.++. . -..+...|..+..+|.+.|++++|...+++.++
T Consensus 12 ~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~ 91 (162)
T 3rkv_A 12 EALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLK 91 (162)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHh
Confidence 34555566666777777777777766653 0 011123455555555555555555555555555
Q ss_pred cCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 036072 532 RGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567 (631)
Q Consensus 532 ~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~ 567 (631)
.... +...|..+..+|...|++++|...|++.+..
T Consensus 92 ~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 92 REET-NEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred cCCc-chHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 4322 4455555555555555555555555555543
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.59 E-value=0.00051 Score=70.79 Aligned_cols=138 Identities=12% Similarity=-0.032 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 036072 246 RTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG 325 (631)
Q Consensus 246 ~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~ 325 (631)
..|..+...+.+.|++++|+..|++..+.-. ....... .+...+.. +.+..+|..+..+|.
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~~~-----------~~~~~~~-------~~~~~~~~-~~~~~~~~nla~~~~ 284 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRYVE-----------GSRAAAE-------DADGAKLQ-PVALSCVLNIGACKL 284 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-----------HHHHHSC-------HHHHGGGH-HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHHhh-----------cCccccC-------hHHHHHHH-HHHHHHHHHHHHHHH
Confidence 4466677778888888888888887765200 0000000 00000000 123344555555555
Q ss_pred cCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 036072 326 RSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAI 403 (631)
Q Consensus 326 ~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~ 403 (631)
+.|++++|...+++..+..+.+...|..+..+|...|++++|...|++..+.. .-+...+..+..++...++.+++.
T Consensus 285 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 285 KMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHH
Confidence 55555555555555554444445555555555666666666666665555532 113444444555555555554443
|
| >2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris} | Back alignment and structure |
|---|
Probab=97.58 E-value=0.0015 Score=55.16 Aligned_cols=93 Identities=14% Similarity=0.044 Sum_probs=56.3
Q ss_pred HHHHHHHHccCHHHHHHHHHHHHhCCCCcCH---HHHHHHHHHHHcCCChHHHHHHHHHHhcccCCC---hhhHHHHHHH
Q 036072 284 IAMNAFAAAKERKKAVAIFELMNKYKFKAGV---DTINCLLENLGRSKLPKEAQLLFDKLKHRFTPN---LTTYTVLLGG 357 (631)
Q Consensus 284 ~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~---~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~---~~~y~~Li~~ 357 (631)
.+...+...|++++|+..|+.+.+.. +.+. ..+..+..++...|++++|...|+.+.+..+.+ ...+..+..+
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~ 85 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLS 85 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHH
Confidence 34455666677777777777666543 1222 355556666666677777777666665544334 4456666666
Q ss_pred HHhcCCHHHHHHHHHHHHHc
Q 036072 358 WCRVKNLMEAGRVWNEMIDK 377 (631)
Q Consensus 358 ~~~~g~~~~A~~l~~~m~~~ 377 (631)
+.+.|++++|...|+.+.+.
T Consensus 86 ~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 86 QYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHH
Confidence 66666666666666666654
|
| >1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00087 Score=69.01 Aligned_cols=91 Identities=7% Similarity=-0.052 Sum_probs=63.1
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036072 502 TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAA 581 (631)
Q Consensus 502 ~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~ 581 (631)
+..+|..+..+|.+.|++++|...+++.++.... +...|..+..+|...|++++|++.|+++.+.. +-+...+..+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~ 349 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 3456777777788888888888888887765432 56777777778888888888888888877653 234555666666
Q ss_pred HHHhcCCHHHHHH
Q 036072 582 DLSRAGRSYVLDE 594 (631)
Q Consensus 582 ~~~~~g~~~~A~~ 594 (631)
++.+.++.+++.+
T Consensus 350 ~~~~~~~~~~a~k 362 (370)
T 1ihg_A 350 VKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 6666666555543
|
| >1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A | Back alignment and structure |
|---|
Probab=97.56 E-value=0.00099 Score=70.74 Aligned_cols=124 Identities=6% Similarity=-0.093 Sum_probs=64.4
Q ss_pred CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCC--------------HHHHHHHHHHHHhcCChhHHHHHHHHHHHC
Q 036072 432 NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPD--------------GLTYNALIKLMKIQKMPDEAVRIYKEMVRS 497 (631)
Q Consensus 432 ~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~--------------~~t~~~li~~~~~~g~~~~A~~l~~~m~~~ 497 (631)
....|..+...|.+.|++++|...|++..+...... ...|..+..+|.+.|++++|+..+++.++.
T Consensus 267 ~a~~~~~~G~~~~~~g~~~~A~~~y~~Al~~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~~ 346 (457)
T 1kt0_A 267 QAAIVKEKGTVYFKGGKYMQAVIQYGKIVSWLEMEYGLSEKESKASESFLLAAFLNLAMCYLKLREYTKAVECCDKALGL 346 (457)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhcccccCChHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc
Confidence 456677777788888888888888887765422111 344444555555555555555555555543
Q ss_pred CCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 036072 498 GFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEA 557 (631)
Q Consensus 498 g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A 557 (631)
. +.+...|..+..+|...|++++|...|++.++.... +...+..+..++...++.++|
T Consensus 347 ~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~-~~~a~~~l~~~~~~~~~~~~a 404 (457)
T 1kt0_A 347 D-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQ-NKAARLQISMCQKKAKEHNER 404 (457)
T ss_dssp S-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHHHHHHHHHHH
T ss_pred C-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHH
Confidence 2 223444555555555555555555555555443211 233444444444444444433
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.51 E-value=0.00023 Score=59.67 Aligned_cols=86 Identities=15% Similarity=0.162 Sum_probs=52.6
Q ss_pred cCChhHHHHHHHHHHHCC--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 036072 481 QKMPDEAVRIYKEMVRSG--FKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAY 558 (631)
Q Consensus 481 ~g~~~~A~~l~~~m~~~g--~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~ 558 (631)
.|++++|+..|++..+.+ -+-+...+..+..+|...|++++|...|++.++.... +...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 456666777777666643 1223455666666777777777777777777665433 4666666666777777777777
Q ss_pred HHHHHHHHC
Q 036072 559 KYLEEMLEK 567 (631)
Q Consensus 559 ~ll~~m~~~ 567 (631)
..+++.+..
T Consensus 82 ~~~~~al~~ 90 (117)
T 3k9i_A 82 ELLLKIIAE 90 (117)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHh
Confidence 777766654
|
| >3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans} | Back alignment and structure |
|---|
Probab=97.48 E-value=0.00021 Score=59.87 Aligned_cols=86 Identities=9% Similarity=-0.036 Sum_probs=45.5
Q ss_pred ccCHHHHHHHHHHHHhCC--CCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHH
Q 036072 292 AKERKKAVAIFELMNKYK--FKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGR 369 (631)
Q Consensus 292 ~g~~~~A~~v~~~m~~~g--~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~ 369 (631)
.|++++|+..|+...+.+ -+.+...+..+..+|...|++++|...|++..+..+.+..++..+..++.+.|++++|..
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 82 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVE 82 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHH
Confidence 345555555555555542 122344455555555666666666666666555444455556666666666666666666
Q ss_pred HHHHHHHc
Q 036072 370 VWNEMIDK 377 (631)
Q Consensus 370 l~~~m~~~ 377 (631)
.|++....
T Consensus 83 ~~~~al~~ 90 (117)
T 3k9i_A 83 LLLKIIAE 90 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHh
Confidence 66655543
|
| >3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans} | Back alignment and structure |
|---|
Probab=97.46 E-value=0.00072 Score=60.20 Aligned_cols=96 Identities=6% Similarity=-0.042 Sum_probs=51.7
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHC------------------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHH
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEK------------------GLLSMETFKIAMNAFAAAKERKKAVAIFELMN 306 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~------------------g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~ 306 (631)
...|...-..+.+.|++++|+..|++.... ......+|..+..+|...|++++|+..++..+
T Consensus 11 a~~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al 90 (162)
T 3rkv_A 11 VEALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVL 90 (162)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHH
Confidence 345666677777888888888888776654 11122344444445555555555555555444
Q ss_pred hCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHh
Q 036072 307 KYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLK 341 (631)
Q Consensus 307 ~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~ 341 (631)
+.. +.+...|..+..+|...|++++|...|+...
T Consensus 91 ~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al 124 (162)
T 3rkv_A 91 KRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLL 124 (162)
T ss_dssp HHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHH
Confidence 432 2334444444444444455555544444443
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.39 E-value=0.0022 Score=55.58 Aligned_cols=111 Identities=10% Similarity=0.038 Sum_probs=64.1
Q ss_pred CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHH
Q 036072 447 RRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ----TGNYEMG 522 (631)
Q Consensus 447 g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~----~g~~~~A 522 (631)
+++++|.+.|++..+.|. ++.. |-..|...+.+++|.++|++..+.| +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g~-~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELNE-MFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTTC-TTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCCC-Hhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 356666666666666652 2222 4444445555666666666666654 44555555556655 5566666
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCC
Q 036072 523 RKVWDEMIRRGCCPDDNSYTVLIGGLIS----QDRSGEAYKYLEEMLEKG 568 (631)
Q Consensus 523 ~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~ll~~m~~~g 568 (631)
.+.|++..+.| +...+..|...|.. .++.++|.++|++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 66666666554 45555555555555 566666666666666554
|
| >1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1 | Back alignment and structure |
|---|
Probab=97.38 E-value=0.0037 Score=54.11 Aligned_cols=113 Identities=9% Similarity=-0.114 Sum_probs=97.5
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHH
Q 036072 482 KMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLIS----QDRSGEA 557 (631)
Q Consensus 482 g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A 557 (631)
++.++|.++|++..+.| .++.. |...|...+.+++|.+.|++..+.| +...+..|...|.. .++.++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 46789999999999988 44443 7777777888999999999999875 77888888888888 8999999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCC
Q 036072 558 YKYLEEMLEKGMKAPVLDYNKFAADLSR----AGRSYVLDELAQKMRFSGKF 605 (631)
Q Consensus 558 ~~ll~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~ 605 (631)
.++|++..+.| +...+..|...|.. .++.++|.+++++.-+.|..
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~ 129 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 129 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCCH
Confidence 99999999987 56788889999998 89999999999999888854
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.27 E-value=0.0007 Score=68.77 Aligned_cols=147 Identities=8% Similarity=-0.106 Sum_probs=77.5
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHH
Q 036072 246 RTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLG 325 (631)
Q Consensus 246 ~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~ 325 (631)
..|..+...+.+.|++++|...|++.......+. .+...++.+++...+. ...|..+..+|.
T Consensus 180 ~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~--------~~~~~~~~~~~~~~l~----------~~~~~nla~~~~ 241 (338)
T 2if4_A 180 DRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDF--------MFQLYGKYQDMALAVK----------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHH--------HHTCCHHHHHHHHHHH----------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccch--------hhhhcccHHHHHHHHH----------HHHHHHHHHHHH
Confidence 4466677777888999999999988776543111 1112233333322221 136677777888
Q ss_pred cCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCC-HHHHHHHHHH-HHHcCCHHHHH
Q 036072 326 RSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPD-VVAHNIMLEG-LLKIGKRSDAI 403 (631)
Q Consensus 326 ~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~-~~ty~~li~~-~~~~g~~~~A~ 403 (631)
+.|++++|...+++..+..+.+...|..+..+|...|++++|...|++..+. .|+ ...+..+... ....+..+.+.
T Consensus 242 ~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l--~p~~~~a~~~L~~l~~~~~~~~~~a~ 319 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKY--APDDKAIRRELRALAEQEKALYQKQK 319 (338)
T ss_dssp TTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred HcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHHHHHHHHHH
Confidence 8888888888888877665667778888888888888888888888887654 333 3344444433 23345667777
Q ss_pred HHHHHHHHc
Q 036072 404 KLFEVMKAK 412 (631)
Q Consensus 404 ~ll~~m~~~ 412 (631)
.+|..|...
T Consensus 320 ~~~~~~l~~ 328 (338)
T 2if4_A 320 EMYKGIFKG 328 (338)
T ss_dssp ---------
T ss_pred HHHHHhhCC
Confidence 788777654
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.26 E-value=0.00036 Score=57.26 Aligned_cols=93 Identities=9% Similarity=-0.024 Sum_probs=64.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcC------HHHH
Q 036072 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAG------VDTI 317 (631)
Q Consensus 244 ~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~------~~~~ 317 (631)
+...|..+...+.+.|++++|+..|++..+..+.+..++..+..++...|++++|++.|+...+.. +.+ ...+
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~ 81 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYT-STAEHVAIRSKLQ 81 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSC-SSTTSHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCccHHHHHHHHH
Confidence 356677777888888888888888888887777777788888888888888888888888887763 222 3444
Q ss_pred HHHHHHHHcCCChHHHHHHH
Q 036072 318 NCLLENLGRSKLPKEAQLLF 337 (631)
Q Consensus 318 ~~Ll~~~~~~g~~~~A~~l~ 337 (631)
..+..++...|+.+.|...+
T Consensus 82 ~~~~~~~~~~~~~~~a~~~~ 101 (111)
T 2l6j_A 82 YRLELAQGAVGSVQIPVVEV 101 (111)
T ss_dssp HHHHHHHHHHHCCCCCSSSS
T ss_pred HHHHHHHHHHHhHhhhHhHH
Confidence 44555555555544444333
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.23 E-value=0.0011 Score=70.82 Aligned_cols=124 Identities=8% Similarity=-0.079 Sum_probs=79.7
Q ss_pred HHhcCChhHHHHHHHHHHHC---CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CC-CCC-HHHHHH
Q 036072 478 MKIQKMPDEAVRIYKEMVRS---GFKP----TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR-----GC-CPD-DNSYTV 543 (631)
Q Consensus 478 ~~~~g~~~~A~~l~~~m~~~---g~~p----~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~-----g~-~p~-~~t~~~ 543 (631)
+...|++++|+.++++..+. -+.+ ...+++.|..+|...|++++|..++++.++. |. .|+ ..+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 44567777777777666542 1111 2456777777777788888877777766542 21 122 356777
Q ss_pred HHHHHHHcCCHHHHHHHHHHHHHC---CCCCC----HHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036072 544 LIGGLISQDRSGEAYKYLEEMLEK---GMKAP----VLDYNKFAADLSRAGRSYVLDELAQKMRF 601 (631)
Q Consensus 544 li~~~~~~g~~~~A~~ll~~m~~~---g~~p~----~~~~~~li~~~~~~g~~~~A~~l~~~m~~ 601 (631)
|...|...|++++|..++++.++- -+.|+ ..+...+..++...|.+++|+.++.++++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 777788888888888887776532 11222 22355666777778888888888888875
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.22 E-value=0.016 Score=62.97 Aligned_cols=174 Identities=10% Similarity=0.032 Sum_probs=130.7
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCC----------HHHHHHHHHHHHHcCCCCC
Q 036072 398 KRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRR----------MDIVYDLLKEMEERGCPPD 467 (631)
Q Consensus 398 ~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~----------~~~A~~l~~~m~~~g~~p~ 467 (631)
.-++|++.++.+... .|+ +..+|+.--..+...|+ ++++++.++.+.+...+ +
T Consensus 44 ~~eeal~~~~~~l~~--nP~--------------~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~pK-~ 106 (567)
T 1dce_A 44 LDESVLELTSQILGA--NPD--------------FATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVNPK-S 106 (567)
T ss_dssp CSHHHHHHHHHHHHH--CTT--------------CHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHCTT-C
T ss_pred CCHHHHHHHHHHHHH--Cch--------------hHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhCCC-C
Confidence 346778888888774 333 22233333333334444 89999999999887655 7
Q ss_pred HHHHHHHHHHHHhcC--ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 036072 468 GLTYNALIKLMKIQK--MPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG-NYEMGRKVWDEMIRRGCCPDDNSYTVL 544 (631)
Q Consensus 468 ~~t~~~li~~~~~~g--~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g-~~~~A~~~~~~m~~~g~~p~~~t~~~l 544 (631)
..+|+.-.-++.+.+ +++++++.++++.+.. .-|...|+.-..++.+.| .++++.+.++++++..+. |...|+..
T Consensus 107 y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r 184 (567)
T 1dce_A 107 YGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYR 184 (567)
T ss_dssp HHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHH
T ss_pred HHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHH
Confidence 788888777888888 6699999999999875 447888888888888888 899999999999987665 88899888
Q ss_pred HHHHHHc--------------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHH
Q 036072 545 IGGLISQ--------------DRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYV 591 (631)
Q Consensus 545 i~~~~~~--------------g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~ 591 (631)
...+.+. +.+++|++++++++... +-+...|..+...+.+.++.++
T Consensus 185 ~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 185 SCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp HHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred HHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 8777763 55789999999988764 4467778888887777776433
|
| >2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana} | Back alignment and structure |
|---|
Probab=97.19 E-value=0.0012 Score=67.06 Aligned_cols=144 Identities=5% Similarity=-0.106 Sum_probs=67.3
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH
Q 036072 436 YTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ 515 (631)
Q Consensus 436 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~ 515 (631)
+..+...+.+.|++++|...|.+..+. .|+... +...++.+++...+. ...|..+..+|.+
T Consensus 182 ~~~~g~~~~~~g~~~~A~~~y~~Al~~--~p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla~~~~~ 242 (338)
T 2if4_A 182 RKMDGNSLFKEEKLEEAMQQYEMAIAY--MGDDFM-------FQLYGKYQDMALAVK----------NPCHLNIAACLIK 242 (338)
T ss_dssp HHHHHHHTCSSSCCHHHHHHHHHHHHH--SCHHHH-------HTCCHHHHHHHHHHH----------THHHHHHHHHHHT
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHH--hccchh-------hhhcccHHHHHHHHH----------HHHHHHHHHHHHH
Confidence 445567788889999999999987764 233321 112222222222111 1255666666667
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHH-HHhcCCHHHHHH
Q 036072 516 TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAAD-LSRAGRSYVLDE 594 (631)
Q Consensus 516 ~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~-~~~~g~~~~A~~ 594 (631)
.|++++|...+++.++.... +...|..+..+|...|++++|...|+++++.. +-+...+..+... ....+..+.+.+
T Consensus 243 ~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~~~~a~~ 320 (338)
T 2if4_A 243 LKRYDEAIGHCNIVLTEEEK-NPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKALYQKQKE 320 (338)
T ss_dssp TTCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------------
T ss_pred cCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHHHHHHHH
Confidence 77777777777766664322 56666666677777777777777777665432 1122333333333 223344556666
Q ss_pred HHHHHH
Q 036072 595 LAQKMR 600 (631)
Q Consensus 595 l~~~m~ 600 (631)
++++|-
T Consensus 321 ~~~~~l 326 (338)
T 2if4_A 321 MYKGIF 326 (338)
T ss_dssp ------
T ss_pred HHHHhh
Confidence 666654
|
| >3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus} | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0017 Score=69.33 Aligned_cols=128 Identities=13% Similarity=0.024 Sum_probs=97.3
Q ss_pred HHHHhccCCHHHHHHHHHHHHHc---CCCC----CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-----CC-CC-CHHH
Q 036072 440 ITGFGNRRRMDIVYDLLKEMEER---GCPP----DGLTYNALIKLMKIQKMPDEAVRIYKEMVRS-----GF-KP-TIHT 505 (631)
Q Consensus 440 i~~~~~~g~~~~A~~l~~~m~~~---g~~p----~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~-----g~-~p-~~~t 505 (631)
+..+...|++++|+.++++..+. -+.+ ...+++.|..+|...|++++|+.++++..+. |- .| ...+
T Consensus 316 a~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~ 395 (490)
T 3n71_A 316 IDKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMA 395 (490)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHH
Confidence 34466789999999999887643 1222 2457899999999999999999999987742 21 12 3567
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCC-CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 036072 506 YNMIMKSYFQTGNYEMGRKVWDEMIRR-----GCC-PD-DNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567 (631)
Q Consensus 506 ~~~Li~~~~~~g~~~~A~~~~~~m~~~-----g~~-p~-~~t~~~li~~~~~~g~~~~A~~ll~~m~~~ 567 (631)
++.|...|...|++++|..++++..+. |.. |+ ..+.+.+-.++...+.+++|..++.++.+.
T Consensus 396 l~nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~ 464 (490)
T 3n71_A 396 VMRAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREA 464 (490)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 899999999999999999999987752 432 22 344566777777889999999999998763
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.14 E-value=0.0067 Score=53.63 Aligned_cols=96 Identities=14% Similarity=0.000 Sum_probs=65.8
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------CH-----HHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CC
Q 036072 506 YNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP------DD-----NSYTVLIGGLISQDRSGEAYKYLEEMLEK-----GM 569 (631)
Q Consensus 506 ~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p------~~-----~t~~~li~~~~~~g~~~~A~~ll~~m~~~-----g~ 569 (631)
+......+.+.|++++|...|++.++..... +. ..|..+..++.+.|++++|+..+++.++. .+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 3444555666667777777666666542210 22 27777888888888888888888888764 12
Q ss_pred CCC-HHHH----HHHHHHHHhcCCHHHHHHHHHHHHh
Q 036072 570 KAP-VLDY----NKFAADLSRAGRSYVLDELAQKMRF 601 (631)
Q Consensus 570 ~p~-~~~~----~~li~~~~~~g~~~~A~~l~~~m~~ 601 (631)
.|+ ...| .....++...|++++|++.|++..+
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 454 3456 7888889999999999998887654
|
| >1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* | Back alignment and structure |
|---|
Probab=97.11 E-value=0.034 Score=60.52 Aligned_cols=173 Identities=9% Similarity=-0.012 Sum_probs=131.2
Q ss_pred cCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccC----------HHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcC
Q 036072 258 ARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKE----------RKKAVAIFELMNKYKFKAGVDTINCLLENLGRS 327 (631)
Q Consensus 258 ~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~----------~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~ 327 (631)
....++|++.++++...++-...+|+.--.++...++ ++++++.++.+.+.. +-+..+|+.-.-++.+.
T Consensus 42 ~~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 42 GELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp TCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTC
T ss_pred CCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHc
Confidence 3345678889999988888777788776666666666 889999999998875 56777888777777788
Q ss_pred C--ChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc--------
Q 036072 328 K--LPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVK-NLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKI-------- 396 (631)
Q Consensus 328 g--~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g-~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~-------- 396 (631)
+ +++++...++++.+..+-|..+|+.-...+.+.| .++++++.++++.+.... |..+|+.....+.+.
T Consensus 121 ~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~ 199 (567)
T 1dce_A 121 PEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGP 199 (567)
T ss_dssp SSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSS
T ss_pred ccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCC-CccHHHHHHHHHHhhcccccccc
Confidence 8 6699999999998877778888888888888888 889999999999876433 777787777766663
Q ss_pred ------CCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCC
Q 036072 397 ------GKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRR 448 (631)
Q Consensus 397 ------g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~ 448 (631)
+.++++++.+...... .|+ +..+|+-+-..+.+.++
T Consensus 200 ~~~~~~~~~~eel~~~~~ai~~--~P~--------------~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 200 QGRLPENVLLKELELVQNAFFT--DPN--------------DQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp CCSSCHHHHHHHHHHHHHHHHH--CSS--------------CSHHHHHHHHHHSCCCC
T ss_pred cccccHHHHHHHHHHHHHHHhh--CCC--------------CccHHHHHHHHHhcCCC
Confidence 4578888888888764 344 44455555555555555
|
| >2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=97.11 E-value=0.00038 Score=57.06 Aligned_cols=64 Identities=17% Similarity=0.178 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 036072 503 IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567 (631)
Q Consensus 503 ~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~ 567 (631)
...+..+...+...|++++|...|++..+.... +...|..+..+|...|++++|++.+++.++.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQ-NPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCC-CHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 344555555566666666666666666554322 4555566666666666666666666666554
|
| >2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8 | Back alignment and structure |
|---|
Probab=97.09 E-value=0.0072 Score=53.41 Aligned_cols=96 Identities=9% Similarity=0.005 Sum_probs=68.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCC------C-----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CC
Q 036072 471 YNALIKLMKIQKMPDEAVRIYKEMVRSGFKP------T-----IHTYNMIMKSYFQTGNYEMGRKVWDEMIRR-----GC 534 (631)
Q Consensus 471 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p------~-----~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~-----g~ 534 (631)
+......+.+.|++++|+..|++.++..-.. + ...|+.+..++.+.|++++|+..+++.++. .+
T Consensus 14 ~~~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~ 93 (159)
T 2hr2_A 14 ALSDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGEL 93 (159)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCT
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccC
Confidence 3344445566677777777777766532110 2 237888888888889999888888888875 12
Q ss_pred CC-CHHHH----HHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 535 CP-DDNSY----TVLIGGLISQDRSGEAYKYLEEMLE 566 (631)
Q Consensus 535 ~p-~~~t~----~~li~~~~~~g~~~~A~~ll~~m~~ 566 (631)
.| +...| .....++...|++++|+..|++.++
T Consensus 94 ~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 94 NQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp TSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 34 45677 8888899999999999999998875
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=97.01 E-value=0.0036 Score=51.84 Aligned_cols=74 Identities=14% Similarity=0.031 Sum_probs=30.2
Q ss_pred HHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHH
Q 036072 265 VSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDK 339 (631)
Q Consensus 265 ~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~ 339 (631)
+..|++..+..+.+...+..+...+...|++++|+..|+...+.. +.+...|..+..+|...|++++|...|++
T Consensus 5 ~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~ 78 (115)
T 2kat_A 5 TERLEAMLAQGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWES 78 (115)
T ss_dssp HHHHHHHHTTTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 333444433333334444444444444444444444444444332 22333344444444444444444444443
|
| >2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis} | Back alignment and structure |
|---|
Probab=96.93 E-value=0.0044 Score=51.29 Aligned_cols=80 Identities=9% Similarity=-0.080 Sum_probs=61.8
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036072 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMID 376 (631)
Q Consensus 297 ~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~ 376 (631)
.|++.|+...+.. +.+...+..+...|...|++++|...|++..+..+.+...|..+..+|...|++++|...|++..+
T Consensus 3 ~a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 3 AITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp CHHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 4666777777654 456777888888888888888888888887766566677888888888888888888888887765
Q ss_pred c
Q 036072 377 K 377 (631)
Q Consensus 377 ~ 377 (631)
.
T Consensus 82 ~ 82 (115)
T 2kat_A 82 A 82 (115)
T ss_dssp H
T ss_pred h
Confidence 3
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.91 E-value=0.0074 Score=47.02 Aligned_cols=77 Identities=8% Similarity=0.099 Sum_probs=42.1
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 036072 246 RTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLEN 323 (631)
Q Consensus 246 ~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~ 323 (631)
..|..+...+...|++++|...|++..+..+.+..++..+..++...|++++|++.|+...+.. +.+...+..+..+
T Consensus 10 ~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 86 (91)
T 1na3_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNA 86 (91)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHH
Confidence 4455555556666666666666666655555455555555555666666666666655555542 2234444444333
|
| >1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A | Back alignment and structure |
|---|
Probab=96.83 E-value=0.012 Score=45.83 Aligned_cols=78 Identities=12% Similarity=-0.001 Sum_probs=37.5
Q ss_pred HHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 036072 316 TINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLL 394 (631)
Q Consensus 316 ~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~ 394 (631)
.+..+...+...|++++|...|++..+..+.+..++..+...+.+.|++++|...|++..+.. +-+...+..+..++.
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHH
Confidence 344444445555555555555555444333344455555555555555555555555555432 113334444444433
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.74 E-value=0.03 Score=63.60 Aligned_cols=70 Identities=11% Similarity=0.017 Sum_probs=38.0
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHH
Q 036072 446 RRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKV 525 (631)
Q Consensus 446 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~ 525 (631)
.|++++|.++.+.+ .+...|..+...+.+.++++.|.+.|.++.. |..+...|...|+.+...++
T Consensus 665 ~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~ 729 (814)
T 3mkq_A 665 VGQLTLARDLLTDE------SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTL 729 (814)
T ss_dssp HTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHH
T ss_pred cCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHH
Confidence 35666665554322 2455666666666666666666666665532 33444455556665554444
Q ss_pred HHHHH
Q 036072 526 WDEMI 530 (631)
Q Consensus 526 ~~~m~ 530 (631)
-+...
T Consensus 730 ~~~a~ 734 (814)
T 3mkq_A 730 AKDAE 734 (814)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 44333
|
| >3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A | Back alignment and structure |
|---|
Probab=96.73 E-value=0.03 Score=63.56 Aligned_cols=155 Identities=10% Similarity=0.058 Sum_probs=98.4
Q ss_pred HHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC
Q 036072 438 CLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG 517 (631)
Q Consensus 438 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g 517 (631)
.++..+.+.|.+++|.++.+.-.. - .......|++++|.++.+.+ .+...|..|...+.+.+
T Consensus 634 ~~~~~l~~~~~~~~a~~~~~~~~~--------~----f~~~l~~~~~~~A~~~~~~~------~~~~~W~~la~~al~~~ 695 (814)
T 3mkq_A 634 KIARFLEGQEYYEEALNISPDQDQ--------K----FELALKVGQLTLARDLLTDE------SAEMKWRALGDASLQRF 695 (814)
T ss_dssp HHHHHHHHTTCHHHHHHHCCCHHH--------H----HHHHHHHTCHHHHHHHHTTC------CCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhCCChHHheecCCCcch--------h----eehhhhcCCHHHHHHHHHhh------CcHhHHHHHHHHHHHcC
Confidence 456667778899998877642211 1 23345789999999987543 46789999999999999
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHH-------HHHHHHHHHHhcCCHH
Q 036072 518 NYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVL-------DYNKFAADLSRAGRSY 590 (631)
Q Consensus 518 ~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~-------~~~~li~~~~~~g~~~ 590 (631)
+++.|++.|..+.. |..+...|...|+.+...++.+.....|..-... .+...++.|.+.++++
T Consensus 696 ~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~~~~~A~~~~~~~g~~~~a~~~~~~~~~~~ 766 (814)
T 3mkq_A 696 NFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTGKFNLAFNAYWIAGDIQGAKDLLIKSQRFS 766 (814)
T ss_dssp CHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTCHHHHHHHHHHTTCHH
T ss_pred CHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcCchHHHHHHHHHcCCHHHHHHHHHHcCChH
Confidence 99999999998753 2334444445566665555555555544110000 1233444445555555
Q ss_pred HHHHHHHHHHhcCCCc--hHHHHHHHHHhhhhhh
Q 036072 591 VLDELAQKMRFSGKFE--VSNVLARWAETTKNRV 622 (631)
Q Consensus 591 ~A~~l~~~m~~~g~~~--~~~~l~~~~~~~k~~~ 622 (631)
+|..+.++ .+... +..++..|.+-+..+.
T Consensus 767 ~A~~lA~~---~~~~~~~i~~~~~~~~~~L~~~~ 797 (814)
T 3mkq_A 767 EAAFLGST---YGLGDNEVNDIVTKWKENLILNG 797 (814)
T ss_dssp HHHHHHHH---TTCCHHHHHHHHHHHHHHHHTTT
T ss_pred HHHHHHHH---hCCChHHHHHHHHHHHHHHHhcc
Confidence 55554443 45556 7789999988776554
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.56 E-value=0.0063 Score=53.67 Aligned_cols=97 Identities=7% Similarity=0.011 Sum_probs=56.3
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC----------HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 036072 481 QKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN----------YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLIS 550 (631)
Q Consensus 481 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~----------~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~ 550 (631)
.+.+++|.+.++...+.. +-+...|+.+..++...++ +++|+..|++.++.... +...|..+..+|..
T Consensus 15 ~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~~ 92 (158)
T 1zu2_A 15 ILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYTS 92 (158)
T ss_dssp HHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHH
T ss_pred HhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHHH
Confidence 344555555555555542 2245555555555555443 34777777777665433 55666677777766
Q ss_pred c-----------CCHHHHHHHHHHHHHCCCCCCHHHHHHHHH
Q 036072 551 Q-----------DRSGEAYKYLEEMLEKGMKAPVLDYNKFAA 581 (631)
Q Consensus 551 ~-----------g~~~~A~~ll~~m~~~g~~p~~~~~~~li~ 581 (631)
. |++++|++.|++.++. .|+...|...+.
T Consensus 93 lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 93 FAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred hcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 5 3677888888877774 455555544333
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.38 E-value=0.014 Score=46.96 Aligned_cols=64 Identities=19% Similarity=0.094 Sum_probs=42.9
Q ss_pred CHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 036072 313 GVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMID 376 (631)
Q Consensus 313 ~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~ 376 (631)
+...+..+..+|...|++++|...|++..+..+.+...|..+..+|.+.|++++|.+.|++..+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 4556666666667777777777777766655555566677777777777777777777766554
|
| >1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=96.30 E-value=0.0087 Score=52.79 Aligned_cols=109 Identities=14% Similarity=0.078 Sum_probs=64.1
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHH
Q 036072 256 GRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQL 335 (631)
Q Consensus 256 ~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~ 335 (631)
.+.+++++|...++...+..+.+.+.|..+..++...++++.+....+ .+++|+.
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~-------------------------~~~eAi~ 67 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQ-------------------------MIQEAIT 67 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHH-------------------------HHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHh-------------------------HHHHHHH
Confidence 344566667777777766666666666666666666655442222111 1446666
Q ss_pred HHHHHhcccCCChhhHHHHHHHHHhc-----------CCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 036072 336 LFDKLKHRFTPNLTTYTVLLGGWCRV-----------KNLMEAGRVWNEMIDKGFKPDVVAHNIMLE 391 (631)
Q Consensus 336 l~~~m~~~~~p~~~~y~~Li~~~~~~-----------g~~~~A~~l~~~m~~~g~~p~~~ty~~li~ 391 (631)
.|++..+-.+.+..+|..+..+|... |++++|++.|++..+. .|+...|...+.
T Consensus 68 ~le~AL~ldP~~~~A~~~LG~ay~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l--~P~~~~y~~al~ 132 (158)
T 1zu2_A 68 KFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLE 132 (158)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHhCcCcHHHHHHHHHHHHHhcccCcchhhhhccHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 66665554444555666666666655 4677777777777764 566555544443
|
| >3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A | Back alignment and structure |
|---|
Probab=96.17 E-value=0.022 Score=45.77 Aligned_cols=64 Identities=9% Similarity=0.051 Sum_probs=43.5
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Q 036072 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNK 307 (631)
Q Consensus 244 ~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~ 307 (631)
+...|..+...+.+.|++++|+..|++..+..+.+..+|..+..+|...|++++|++.|+...+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~ 69 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIE 69 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 3556666667777777777777777777766665566666677777777777777776666554
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=95.78 E-value=0.18 Score=50.79 Aligned_cols=151 Identities=8% Similarity=-0.073 Sum_probs=97.6
Q ss_pred CCHHHHHHHHHHHHh--cC---ChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHH
Q 036072 243 HNSRTYNSMMSILGR--AR---QFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTI 317 (631)
Q Consensus 243 p~~~~y~~li~~~~~--~g---~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~ 317 (631)
.|...|...+++... .+ ++.+|..+|++..+..+-....|..+.-+|.. . ...+ ..+....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~lDP~~a~A~A~la~a~~~----------~---~~~~-~~~~~~~ 257 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQSSPEFTYARAEKALVDIV----------R---HSQH-PLDEKQL 257 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH----------H---HHHS-CCCHHHH
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH----------H---hccC-CCchhhH
Confidence 456777777766542 22 35678888888888877666666665555541 0 0000 0111100
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 036072 318 NCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIG 397 (631)
Q Consensus 318 ~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g 397 (631)
..+ ..+.+... .....+.+..+|.++...+...|++++|...+++....+ |+...|..+-..+.-.|
T Consensus 258 ~~l----------~~a~~a~~-a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G 324 (372)
T 3ly7_A 258 AAL----------NTEIDNIV-TLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKG 324 (372)
T ss_dssp HHH----------HHHHHHHH-TCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTT
T ss_pred HHH----------HHHHHHHH-hcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCC
Confidence 000 11222111 112345678888888888888899999999999999875 78888877888888999
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHH
Q 036072 398 KRSDAIKLFEVMKAKGPSPNVRSYT 422 (631)
Q Consensus 398 ~~~~A~~ll~~m~~~g~~p~~~~~~ 422 (631)
++++|.+.|++.... .|...+|.
T Consensus 325 ~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 325 MNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp CHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CHHHHHHHHHHHHhc--CCCcChHH
Confidence 999999999988874 56665654
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=95.60 E-value=0.051 Score=56.82 Aligned_cols=86 Identities=15% Similarity=0.154 Sum_probs=55.5
Q ss_pred cCChhHHHHHHHHHHHC---CCCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CC-CCC-HHHHHHHHH
Q 036072 481 QKMPDEAVRIYKEMVRS---GFKP----TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR-----GC-CPD-DNSYTVLIG 546 (631)
Q Consensus 481 ~g~~~~A~~l~~~m~~~---g~~p----~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~-----g~-~p~-~~t~~~li~ 546 (631)
.|++++|+.++++..+. -+.| ...+++.|..+|...|++++|..++++.++. |. .|+ ..+|+.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 46677777777766541 1112 2456777777777788888887777776642 21 122 345777777
Q ss_pred HHHHcCCHHHHHHHHHHHHH
Q 036072 547 GLISQDRSGEAYKYLEEMLE 566 (631)
Q Consensus 547 ~~~~~g~~~~A~~ll~~m~~ 566 (631)
.|...|++++|..++++.++
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHH
Confidence 77777888777777777654
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=95.59 E-value=0.057 Score=56.41 Aligned_cols=92 Identities=12% Similarity=0.070 Sum_probs=63.7
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCC---CCC----CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CC-CCC-HHH
Q 036072 475 IKLMKIQKMPDEAVRIYKEMVRSG---FKP----TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR-----GC-CPD-DNS 540 (631)
Q Consensus 475 i~~~~~~g~~~~A~~l~~~m~~~g---~~p----~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~-----g~-~p~-~~t 540 (631)
+..+...|++++|+.++++..+.. +.| ...+++.|..+|...|++++|+.++++.++. |. .|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 344556778888888888877531 122 2466788888888888888888888877642 21 122 356
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 541 YTVLIGGLISQDRSGEAYKYLEEMLE 566 (631)
Q Consensus 541 ~~~li~~~~~~g~~~~A~~ll~~m~~ 566 (631)
++.|...|...|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 77788888888888888888877654
|
| >3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A* | Back alignment and structure |
|---|
Probab=95.49 E-value=0.065 Score=56.00 Aligned_cols=87 Identities=7% Similarity=-0.090 Sum_probs=68.6
Q ss_pred HcCCHHHHHHHHHHHHHc---CCCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----C-CCCC-HHHHHHHH
Q 036072 515 QTGNYEMGRKVWDEMIRR---GCCPD----DNSYTVLIGGLISQDRSGEAYKYLEEMLEK-----G-MKAP-VLDYNKFA 580 (631)
Q Consensus 515 ~~g~~~~A~~~~~~m~~~---g~~p~----~~t~~~li~~~~~~g~~~~A~~ll~~m~~~-----g-~~p~-~~~~~~li 580 (631)
..|++++|..++++.++. -+.|+ ..+++.|..+|...|++++|..++++.++- | -.|+ ..+|+.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 357899999999987752 12222 467999999999999999999999998742 3 1233 34599999
Q ss_pred HHHHhcCCHHHHHHHHHHHHh
Q 036072 581 ADLSRAGRSYVLDELAQKMRF 601 (631)
Q Consensus 581 ~~~~~~g~~~~A~~l~~~m~~ 601 (631)
..|...|++++|+.++++...
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999988653
|
| >3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A* | Back alignment and structure |
|---|
Probab=95.44 E-value=0.069 Score=55.76 Aligned_cols=92 Identities=10% Similarity=-0.098 Sum_probs=72.5
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcC---CCCC----HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----C-CCCC-HHH
Q 036072 510 MKSYFQTGNYEMGRKVWDEMIRRG---CCPD----DNSYTVLIGGLISQDRSGEAYKYLEEMLEK-----G-MKAP-VLD 575 (631)
Q Consensus 510 i~~~~~~g~~~~A~~~~~~m~~~g---~~p~----~~t~~~li~~~~~~g~~~~A~~ll~~m~~~-----g-~~p~-~~~ 575 (631)
+..+...|++++|..++++..+.. +.|+ ..+++.|...|...|++++|+.++++++.- | -.|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 455667899999999999988641 2222 467899999999999999999999988742 2 2232 345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHh
Q 036072 576 YNKFAADLSRAGRSYVLDELAQKMRF 601 (631)
Q Consensus 576 ~~~li~~~~~~g~~~~A~~l~~~m~~ 601 (631)
++.|...|...|++++|+.++++...
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 89999999999999999999987643
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=95.39 E-value=0.025 Score=44.91 Aligned_cols=58 Identities=16% Similarity=0.209 Sum_probs=38.5
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCHH-HHHHHHHHHHHccCHHHHHHHHHHHHhCC
Q 036072 252 MSILGRARQFETMVSMLEEMGEKGLLSME-TFKIAMNAFAAAKERKKAVAIFELMNKYK 309 (631)
Q Consensus 252 i~~~~~~g~~~~A~~l~~~m~~~g~~~~~-~~~~li~~~~~~g~~~~A~~v~~~m~~~g 309 (631)
...+.+.|++++|...|++..+..+.+.. .+..+..++...|++++|++.|+...+..
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 65 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELN 65 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 34455667777777777777666665666 66666667777777777777777666653
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=95.18 E-value=1.2 Score=37.47 Aligned_cols=138 Identities=12% Similarity=0.074 Sum_probs=77.8
Q ss_pred cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHH
Q 036072 361 VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLI 440 (631)
Q Consensus 361 ~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li 440 (631)
.|.+++..++..+.... .+..-||.+|--....-+-+-..++++..-+. .|
T Consensus 20 dG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGki---FD----------------------- 70 (172)
T 1wy6_A 20 DGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSY---FD----------------------- 70 (172)
T ss_dssp TTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGG---SC-----------------------
T ss_pred hhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhh---cC-----------------------
Confidence 35555666666655543 24445555555555555555555554443221 11
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 036072 441 TGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE 520 (631)
Q Consensus 441 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~ 520 (631)
...+|++......+-.+- -+...++..+..+...|.-++-.+++.++.. +.+|+....-.+..+|.+.|+..
T Consensus 71 --is~C~NlKrVi~C~~~~n-----~~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r 142 (172)
T 1wy6_A 71 --LDKCQNLKSVVECGVINN-----TLNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDER 142 (172)
T ss_dssp --GGGCSCTHHHHHHHHHTT-----CCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHH
T ss_pred --cHhhhcHHHHHHHHHHhc-----chHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchh
Confidence 112344444444443322 1444556666777777777777777777543 23566677777777777777777
Q ss_pred HHHHHHHHHHHcCCC
Q 036072 521 MGRKVWDEMIRRGCC 535 (631)
Q Consensus 521 ~A~~~~~~m~~~g~~ 535 (631)
+|.+++.+..++|++
T Consensus 143 ~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 143 DATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHhhhH
Confidence 777777777777653
|
| >3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A | Back alignment and structure |
|---|
Probab=94.66 E-value=0.52 Score=47.52 Aligned_cols=73 Identities=8% Similarity=-0.122 Sum_probs=42.0
Q ss_pred CcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Q 036072 311 KAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAH 386 (631)
Q Consensus 311 ~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty 386 (631)
+.+..+|..+...+...|++++|...+++..... |+...|..+...+.-.|++++|.+.|++.... .|...+|
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln-~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~ 346 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE-MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTL 346 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChH
Confidence 4455555555555555566666666666655432 45555555566666666666666666666653 4444444
|
| >2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis} | Back alignment and structure |
|---|
Probab=94.44 E-value=0.23 Score=39.03 Aligned_cols=65 Identities=8% Similarity=-0.017 Sum_probs=42.2
Q ss_pred HHHHHHccCHHHHHHHHHHHHhCCCCcCHH-HHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhH
Q 036072 286 MNAFAAAKERKKAVAIFELMNKYKFKAGVD-TINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTY 351 (631)
Q Consensus 286 i~~~~~~g~~~~A~~v~~~m~~~g~~~~~~-~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y 351 (631)
...+...|++++|+..|+...+.. +.+.. .+..+..+|...|++++|...|++..+..+.+...+
T Consensus 7 a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~ 72 (99)
T 2kc7_A 7 IKELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQ 72 (99)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHH
Confidence 445666777777777777777654 34555 666777777777777777777777665444344433
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.23 E-value=1.1 Score=39.87 Aligned_cols=130 Identities=16% Similarity=0.139 Sum_probs=89.9
Q ss_pred HHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHH
Q 036072 441 TGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYE 520 (631)
Q Consensus 441 ~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~ 520 (631)
......|+++.|.++.+.+ -+...|..|-......|+++-|.+.|.+..+ +..+.-.|...|+.+
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e 77 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVN 77 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHH
Confidence 3455678999999887765 3788899999999999999999999887643 456666677788888
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036072 521 MGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMR 600 (631)
Q Consensus 521 ~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~ 600 (631)
...++-+.....| -++.....+...|+++++.++|.+. |..| --+......|..+.|.++.+++.
T Consensus 78 ~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~---~r~~------eA~~~A~t~g~~~~a~~~~~~~~ 142 (177)
T 3mkq_B 78 KLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG---GSLP------LAYAVAKANGDEAAASAFLEQAE 142 (177)
T ss_dssp HHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT---TCHH------HHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC---CChH------HHHHHHHHcCcHHHHHHHHHHhC
Confidence 7776666555543 2455556677789999999888543 3222 11112233566778888877664
|
| >1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1 | Back alignment and structure |
|---|
Probab=94.13 E-value=2.3 Score=35.87 Aligned_cols=68 Identities=13% Similarity=0.050 Sum_probs=55.5
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 036072 347 NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415 (631)
Q Consensus 347 ~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~ 415 (631)
+....+..++.....|.-++-.+++.++.. +.+|+....-.+..+|.+.|+..+|.+++.+..+.|+.
T Consensus 90 ~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 90 LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 445567778888888999999999988644 34677888888999999999999999999999998865
|
| >3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=94.03 E-value=2 Score=38.20 Aligned_cols=97 Identities=9% Similarity=0.044 Sum_probs=45.5
Q ss_pred HccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHH
Q 036072 291 AAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRV 370 (631)
Q Consensus 291 ~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l 370 (631)
..|+++.|.++.+.+ .+...|..|.+.....|+++-|++.|....+ |..+.-.|.-.|+.+...++
T Consensus 17 ~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D--------~~~L~~Ly~~tg~~e~L~kl 82 (177)
T 3mkq_B 17 EYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS--------FDKLSFLYLVTGDVNKLSKM 82 (177)
T ss_dssp HTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC--------HHHHHHHHHHHTCHHHHHHH
T ss_pred hcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC--------HHHHHHHHHHhCCHHHHHHH
Confidence 345555555544433 2344555555555555555555555554443 23333444444554444444
Q ss_pred HHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 036072 371 WNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFE 407 (631)
Q Consensus 371 ~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~ 407 (631)
-+.....| -++.....+...|+++++.++|.
T Consensus 83 a~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~ 113 (177)
T 3mkq_B 83 QNIAQTRE------DFGSMLLNTFYNNSTKERSSIFA 113 (177)
T ss_dssp HHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHH
Confidence 33333332 13344444445555555555553
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=93.32 E-value=0.7 Score=36.42 Aligned_cols=67 Identities=9% Similarity=0.057 Sum_probs=48.4
Q ss_pred CCHHHHHHHHHHHHhcCC---hhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCC
Q 036072 243 HNSRTYNSMMSILGRARQ---FETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYK 309 (631)
Q Consensus 243 p~~~~y~~li~~~~~~g~---~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g 309 (631)
.|...+..+..++...++ .++|..+|++..+..+.+..+...+...+...|++++|+..|+.+.+..
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 356666666666654433 6778888888887777777777777777778888888888888777753
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=93.08 E-value=0.57 Score=40.69 Aligned_cols=79 Identities=14% Similarity=0.168 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCCHHHHHHH
Q 036072 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTG---NYEMGRKVWDEMIRRGCCP--DDNSYTVLIGGLISQDRSGEAYKY 560 (631)
Q Consensus 486 ~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g---~~~~A~~~~~~m~~~g~~p--~~~t~~~li~~~~~~g~~~~A~~l 560 (631)
.+.+-|.+..+.+. ++..+...+..++++.+ ++++++.++++..+.. .| +...+-.|.-+|.+.|++++|.++
T Consensus 16 ~~~~~y~~e~~~~~-~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~~y 93 (152)
T 1pc2_A 16 KFEKKFQSEKAAGS-VSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKALKY 93 (152)
T ss_dssp HHHHHHHHHHHTTC-CCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHHHH
T ss_pred HHHHHHHHHHccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHHHH
Confidence 34444444444332 45555555555555554 3445555555555542 12 223333344445555666666665
Q ss_pred HHHHHH
Q 036072 561 LEEMLE 566 (631)
Q Consensus 561 l~~m~~ 566 (631)
++.+++
T Consensus 94 ~~~lL~ 99 (152)
T 1pc2_A 94 VRGLLQ 99 (152)
T ss_dssp HHHHHH
T ss_pred HHHHHh
Confidence 555555
|
| >3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633} | Back alignment and structure |
|---|
Probab=92.89 E-value=1.1 Score=35.18 Aligned_cols=66 Identities=14% Similarity=0.117 Sum_probs=39.5
Q ss_pred cCHHHHHHHHHHHHcCCC---hHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036072 312 AGVDTINCLLENLGRSKL---PKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK 377 (631)
Q Consensus 312 ~~~~~~~~Ll~~~~~~g~---~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~ 377 (631)
.+...+..+..++...++ .++|..+|++..+..+.+......+...+.+.|++++|...|+.+.+.
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~ 72 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDS 72 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTC
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 344555555555443332 466666666665555556666666666666666666666666666654
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=92.82 E-value=1 Score=36.06 Aligned_cols=65 Identities=6% Similarity=0.010 Sum_probs=37.6
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHC-------CCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhC
Q 036072 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEK-------GLLSMETFKIAMNAFAAAKERKKAVAIFELMNKY 308 (631)
Q Consensus 244 ~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~-------g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~ 308 (631)
+...+..|...+.+.++++.|...|+...+. +.....++..+..++.+.|++++|+..++...+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l 75 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLEL 75 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhc
Confidence 3445555666666666666666666665432 2233445666666666666666666666666554
|
| >2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A | Back alignment and structure |
|---|
Probab=92.44 E-value=0.86 Score=36.57 Aligned_cols=65 Identities=14% Similarity=-0.041 Sum_probs=32.8
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhCC------CCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhc
Q 036072 278 SMETFKIAMNAFAAAKERKKAVAIFELMNKYK------FKAGVDTINCLLENLGRSKLPKEAQLLFDKLKH 342 (631)
Q Consensus 278 ~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g------~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~ 342 (631)
+...+..+...+...+++..|...|+...+.- -.....++..|..+|.+.|+++.|...+++..+
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 33444555566666666666666665554421 012334444455555555555555555554443
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=92.31 E-value=12 Score=38.85 Aligned_cols=168 Identities=12% Similarity=0.100 Sum_probs=101.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHc--CCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc----CCCCcHHH
Q 036072 350 TYTVLLGGWCRVKNLMEAGRVWNEMIDK--GFKPD---VVAHNIMLEGLLKIGKRSDAIKLFEVMKAK----GPSPNVRS 420 (631)
Q Consensus 350 ~y~~Li~~~~~~g~~~~A~~l~~~m~~~--g~~p~---~~ty~~li~~~~~~g~~~~A~~ll~~m~~~----g~~p~~~~ 420 (631)
....|...|...|++.+|.+++.++... |.... ...|...++.|...+++..|..++..+... ...|+.
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~l-- 216 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESL-- 216 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHH--
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHH--
Confidence 4467888999999999999999998753 22111 346777889999999999999999886431 112221
Q ss_pred HHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHH----HHHhcCChhHHHHHHHHHH
Q 036072 421 YTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEER-GCPPDGLTYNALIK----LMKIQKMPDEAVRIYKEMV 495 (631)
Q Consensus 421 ~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~t~~~li~----~~~~~g~~~~A~~l~~~m~ 495 (631)
....+...+..+...+++.+|...|.+..+. ...-|...+..++. ...-.+....-..+.....
T Consensus 217 -----------k~~~~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~ 285 (445)
T 4b4t_P 217 -----------KLEYYNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQ 285 (445)
T ss_dssp -----------HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHH
T ss_pred -----------HHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHh
Confidence 1234556677788889999999888877543 11123322222211 1112222222223333333
Q ss_pred HCCCCCCHHHHHHHHHHHHHc--CCHHHHHHHHHHHH
Q 036072 496 RSGFKPTIHTYNMIMKSYFQT--GNYEMGRKVWDEMI 530 (631)
Q Consensus 496 ~~g~~p~~~t~~~Li~~~~~~--g~~~~A~~~~~~m~ 530 (631)
....-++...|..++.+|... .+++.+.+.|....
T Consensus 286 ~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L 322 (445)
T 4b4t_P 286 NDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVL 322 (445)
T ss_dssp HHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSST
T ss_pred hcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHh
Confidence 322235677888899988765 35676666665544
|
| >1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1 | Back alignment and structure |
|---|
Probab=91.92 E-value=0.88 Score=39.49 Aligned_cols=23 Identities=22% Similarity=0.216 Sum_probs=10.7
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH
Q 036072 354 LLGGWCRVKNLMEAGRVWNEMID 376 (631)
Q Consensus 354 Li~~~~~~g~~~~A~~l~~~m~~ 376 (631)
|.-+|.+.|++++|.+.++.+.+
T Consensus 77 LAv~~~kl~~Y~~A~~y~~~lL~ 99 (152)
T 1pc2_A 77 LAVGNYRLKEYEKALKYVRGLLQ 99 (152)
T ss_dssp HHHHHHHTSCHHHHHHHHHHHHH
T ss_pred HHHHHHHccCHHHHHHHHHHHHh
Confidence 33344444444444444444444
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=91.79 E-value=1.7 Score=42.04 Aligned_cols=84 Identities=15% Similarity=0.195 Sum_probs=48.0
Q ss_pred hHHHHHHHHHHHCCCCCC---HHHHHHHHHHHHH-----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-CCHH
Q 036072 485 DEAVRIYKEMVRSGFKPT---IHTYNMIMKSYFQ-----TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQ-DRSG 555 (631)
Q Consensus 485 ~~A~~l~~~m~~~g~~p~---~~t~~~Li~~~~~-----~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~-g~~~ 555 (631)
..|...+++.++. .|+ -..|..|...|.. -|+.++|.+.|++.++.+..-+..++..+...++.. |+.+
T Consensus 180 ~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~ 257 (301)
T 3u64_A 180 HAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRA 257 (301)
T ss_dssp HHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHH
T ss_pred HHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHH
Confidence 3455555555543 333 3456666666666 366677777776666643322355555556666653 6667
Q ss_pred HHHHHHHHHHHCCCC
Q 036072 556 EAYKYLEEMLEKGMK 570 (631)
Q Consensus 556 ~A~~ll~~m~~~g~~ 570 (631)
+|.+++++.+.....
T Consensus 258 ~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 258 GFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHcCCCC
Confidence 777777766665544
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=90.59 E-value=3.1 Score=35.80 Aligned_cols=105 Identities=12% Similarity=0.101 Sum_probs=66.0
Q ss_pred cCHHHHHHHHHHHHcCCCh------HHHHHHHHHHhcccCCChh-hHHHHHHH------HHhcCCHHHHHHHHHHHHHcC
Q 036072 312 AGVDTINCLLENLGRSKLP------KEAQLLFDKLKHRFTPNLT-TYTVLLGG------WCRVKNLMEAGRVWNEMIDKG 378 (631)
Q Consensus 312 ~~~~~~~~Ll~~~~~~g~~------~~A~~l~~~m~~~~~p~~~-~y~~Li~~------~~~~g~~~~A~~l~~~m~~~g 378 (631)
-|..+|-..+...-+.|+. +...++|++.....+|+.. .|...|.. +...++.++|.++|+.+.+.+
T Consensus 11 ~~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 11 NNPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEALPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp CSHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHHSCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CCHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHcCCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 3455555555555555655 5666666666555555432 11111111 123478888999999887653
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCc
Q 036072 379 FKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPN 417 (631)
Q Consensus 379 ~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~ 417 (631)
+--...|......-.+.|+++.|.+++......+..|.
T Consensus 91 -KkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~ 128 (161)
T 4h7y_A 91 -KKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPL 128 (161)
T ss_dssp -TTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCH
T ss_pred -HHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcH
Confidence 22366777777777788999999999998888766554
|
| >3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A* | Back alignment and structure |
|---|
Probab=90.50 E-value=1.7 Score=42.13 Aligned_cols=91 Identities=13% Similarity=0.137 Sum_probs=59.9
Q ss_pred HHHHHHHHHHhcccCCC---hhhHHHHHHHHHhc-----CCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHc-CCHHH
Q 036072 331 KEAQLLFDKLKHRFTPN---LTTYTVLLGGWCRV-----KNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKI-GKRSD 401 (631)
Q Consensus 331 ~~A~~l~~~m~~~~~p~---~~~y~~Li~~~~~~-----g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~-g~~~~ 401 (631)
..|...+++..+- .|+ -..|..|...|.+. |+.++|.+.|++..+.+..-+..++......++.. |+.++
T Consensus 180 ~~A~a~lerAleL-DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 180 HAAVMMLERACDL-WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHH-CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHh-CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 3444444444332 233 45778888888884 88888888888888753322466677777777774 88888
Q ss_pred HHHHHHHHHHcCCC--CcHHHHH
Q 036072 402 AIKLFEVMKAKGPS--PNVRSYT 422 (631)
Q Consensus 402 A~~ll~~m~~~g~~--p~~~~~~ 422 (631)
+.+.+++....... |+....+
T Consensus 259 a~~~L~kAL~a~p~~~P~~~lan 281 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHNKLLV 281 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSCHHHH
T ss_pred HHHHHHHHHcCCCCCCCChhHHH
Confidence 88888888876655 5544433
|
| >4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A | Back alignment and structure |
|---|
Probab=90.28 E-value=4.4 Score=34.90 Aligned_cols=103 Identities=11% Similarity=0.125 Sum_probs=65.7
Q ss_pred CHHHHHHHHHHHHhcCCh------hHHHHHHHHHHHCCCCCCH----HHHHHHHHH---HHHcCCHHHHHHHHHHHHHcC
Q 036072 467 DGLTYNALIKLMKIQKMP------DEAVRIYKEMVRSGFKPTI----HTYNMIMKS---YFQTGNYEMGRKVWDEMIRRG 533 (631)
Q Consensus 467 ~~~t~~~li~~~~~~g~~------~~A~~l~~~m~~~g~~p~~----~t~~~Li~~---~~~~g~~~~A~~~~~~m~~~g 533 (631)
|..+|-..+...-+.|++ ++..++|++.... ++|+. ..|-.|.-- +...++.++|.++|+.+++.+
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~-~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~h 90 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA-LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARANC 90 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH-SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc-CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 455555556555555666 6667777776653 34431 112111111 123478889999999887642
Q ss_pred CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCC
Q 036072 534 CCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKA 571 (631)
Q Consensus 534 ~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p 571 (631)
-+- ...|.....--.++|+.+.|.+++.+.+..+..|
T Consensus 91 KkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~ 127 (161)
T 4h7y_A 91 KKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERGAVP 127 (161)
T ss_dssp TTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBC
T ss_pred HHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCc
Confidence 222 6777777777778999999999999998877554
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=89.98 E-value=1.6 Score=48.42 Aligned_cols=127 Identities=17% Similarity=0.181 Sum_probs=81.2
Q ss_pred HHHHHHHhccCC-HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCC-hhHHHHHHHHHHHC------CCCC-CH----
Q 036072 437 TCLITGFGNRRR-MDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKM-PDEAVRIYKEMVRS------GFKP-TI---- 503 (631)
Q Consensus 437 ~~li~~~~~~g~-~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~-~~~A~~l~~~m~~~------g~~p-~~---- 503 (631)
..++..+...++ ++.|.++|+++.+.....+......++..+.+.++ --+|.+++.+..+. ...+ +.
T Consensus 252 ~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~~ 331 (754)
T 4gns_B 252 YSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSAR 331 (754)
T ss_dssp HHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHHH
T ss_pred HHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhccccccccc
Confidence 445555555555 68899999999887433222222334443333332 22455555554421 1111 11
Q ss_pred ------HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 036072 504 ------HTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEM 564 (631)
Q Consensus 504 ------~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m 564 (631)
.....=.+-|...|+++.|.++-++....-. -+..+|..|..+|...|+++.|+-.++.+
T Consensus 332 ~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aP-seF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 332 LMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELAL-DSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred ccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCc-hhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 1222224456678999999999999887532 26899999999999999999999999887
|
| >3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A | Back alignment and structure |
|---|
Probab=89.28 E-value=20 Score=36.31 Aligned_cols=131 Identities=12% Similarity=0.051 Sum_probs=82.5
Q ss_pred HHHHHHHHHhhccCch-------hHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHC--CC----C
Q 036072 211 HNLVVDVLERFRHARR-------PAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEK--GL----L 277 (631)
Q Consensus 211 ~~~~~~vl~~~~~~~~-------~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~--g~----~ 277 (631)
...+..++..+...+. ...+.++|.......-.....=..++..|...|++.+|..++.++.+. .. .
T Consensus 58 ~k~v~~l~~~~~~~~~~~~~~~~~~~~~~~~a~~~~r~flr~~l~~kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~ 137 (394)
T 3txn_A 58 AKLVRSLVDMFLDMDAGTGIEVQLCKDCIEWAKQEKRTFLRQSLEARLIALYFDTALYTEALALGAQLLRELKKLDDKNL 137 (394)
T ss_dssp HHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHH
T ss_pred HHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHhccccchh
Confidence 5557777777755432 366778887644311000112236788899999999999988888763 11 1
Q ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhC--CCCcCHHHHHHH----HHHHH-cCCChHHHHHHHHHHh
Q 036072 278 SMETFKIAMNAFAAAKERKKAVAIFELMNKY--KFKAGVDTINCL----LENLG-RSKLPKEAQLLFDKLK 341 (631)
Q Consensus 278 ~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~--g~~~~~~~~~~L----l~~~~-~~g~~~~A~~l~~~m~ 341 (631)
-.+++..-+..|...++..++...+...... .+.+++.....+ ...+. ..+++..|...|-+.-
T Consensus 138 llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~~~Gi~~l~~~rdyk~A~~~F~eaf 208 (394)
T 3txn_A 138 LVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDLQSGILHAADERDFKTAFSYFYEAF 208 (394)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHhhHHHHHhccCHHHHHHHHHHHH
Confidence 2357777888888999999999888777643 222333332222 12344 6788888877776653
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=88.96 E-value=2.8 Score=35.00 Aligned_cols=85 Identities=14% Similarity=0.110 Sum_probs=43.4
Q ss_pred cCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHH---HHHHHHHHHHcCCCC--CHHHHHHHHHHHHHcCCHH
Q 036072 481 QKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEM---GRKVWDEMIRRGCCP--DDNSYTVLIGGLISQDRSG 555 (631)
Q Consensus 481 ~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~---A~~~~~~m~~~g~~p--~~~t~~~li~~~~~~g~~~ 555 (631)
...+..+.+-|.+....|. ++..+-..+..++.+..+... ++.+++++.+.+ .| .....-.|.-++.+.|+++
T Consensus 14 ~~~l~~~~~~y~~e~~~~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAGS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHHSC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccCC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHH
Confidence 3344455555555444432 555555555556665554443 566666655542 11 2223333444555666666
Q ss_pred HHHHHHHHHHHC
Q 036072 556 EAYKYLEEMLEK 567 (631)
Q Consensus 556 ~A~~ll~~m~~~ 567 (631)
+|.++++.+++.
T Consensus 92 ~A~~~~~~lL~~ 103 (126)
T 1nzn_A 92 KALKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHh
Confidence 666666666553
|
| >1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ... | Back alignment and structure |
|---|
Probab=88.85 E-value=1.7 Score=34.50 Aligned_cols=61 Identities=13% Similarity=0.139 Sum_probs=38.3
Q ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHH
Q 036072 295 RKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLL 355 (631)
Q Consensus 295 ~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li 355 (631)
.-++.+.++.+....+.|++.+..+.+++|.+.+++..|.++|+.++.+......+|..++
T Consensus 26 ~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~~~~~~iY~~~l 86 (109)
T 1v54_E 26 AWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 86 (109)
T ss_dssp HHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCchhhHHHHH
Confidence 3345555566666666677777777777777777777777777776655444444565555
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=88.02 E-value=1.7 Score=44.45 Aligned_cols=73 Identities=7% Similarity=0.059 Sum_probs=59.3
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHh-----CCCCcCHHHHH
Q 036072 246 RTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNK-----YKFKAGVDTIN 318 (631)
Q Consensus 246 ~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~-----~g~~~~~~~~~ 318 (631)
.....++..+...|+++++...++.+....+.+...+..+|.++.+.|+..+|++.|+.+.+ .|+.|+..+-.
T Consensus 172 ~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~ 249 (388)
T 2ff4_A 172 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRA 249 (388)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHH
Confidence 45566777778889999999988888888888888999999999999999999988887754 48888776543
|
| >4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.57 E-value=2.7 Score=46.71 Aligned_cols=128 Identities=11% Similarity=0.034 Sum_probs=84.1
Q ss_pred HHHHHHHHHhcCC-hhHHHHHHHHHHHCCCCCHHHHH-HHHHHHHHcc-CHHHHHHHHHHHHhC------CCC-cCH---
Q 036072 248 YNSMMSILGRARQ-FETMVSMLEEMGEKGLLSMETFK-IAMNAFAAAK-ERKKAVAIFELMNKY------KFK-AGV--- 314 (631)
Q Consensus 248 y~~li~~~~~~g~-~~~A~~l~~~m~~~g~~~~~~~~-~li~~~~~~g-~~~~A~~v~~~m~~~------g~~-~~~--- 314 (631)
-..+++.+...++ .+.|..+|+++.+..+.....+. .++..+...+ +--+|++++.+..+. ... .+.
T Consensus 251 ~~~Ll~~~~~t~~~~~~a~~~le~L~~~~p~~~~~~~~~~i~~~~~~~~~Ev~av~ll~~~l~~~~~~~~~l~~~~~~~~ 330 (754)
T 4gns_B 251 MYSLKSFIAITPSLVDFTIDYLKGLTKKDPIHDIYYKTAMITILDHIETKELDMITILNETLDPLLSLLNDLPPRDADSA 330 (754)
T ss_dssp HHHHHHHHHTCGGGHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHHHHHHHHTCSSCCHHHH
T ss_pred HHHHHHHHcccccHHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhhhhhhhhcccccccc
Confidence 3555666666666 57899999999887664333333 2333332222 233455555444321 111 111
Q ss_pred -------HHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036072 315 -------DTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMI 375 (631)
Q Consensus 315 -------~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~ 375 (631)
...+.-.+.+...|+++.|+++-++...-.+.+-.+|..|..+|.+.|+++.|+-.++.+.
T Consensus 331 ~~~~~~~~LL~~Qa~FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 331 RLMNCMSDLLNIQTNFLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred cccCcchHHHHHHHHHHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 1222334567778999999999999887767778899999999999999999999998874
|
| >4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae} | Back alignment and structure |
|---|
Probab=87.34 E-value=29 Score=35.84 Aligned_cols=189 Identities=12% Similarity=0.084 Sum_probs=119.7
Q ss_pred CChHHHHHHHHHHhcc------cCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHcCCHH
Q 036072 328 KLPKEAQLLFDKLKHR------FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK-GFKPDVVAHNIMLEGLLKIGKRS 400 (631)
Q Consensus 328 g~~~~A~~l~~~m~~~------~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~-g~~p~~~ty~~li~~~~~~g~~~ 400 (631)
|+++.|.+.+..+.+. ..........++..|.+.++++...+.+..+... |..+.. ...+++.+.
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~Lskkr~qlk~a--i~~~V~~~~------ 101 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLLSKKHGQLKLS--IQYMIQKVM------ 101 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTTTSHHH--HHHHHHHHH------
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhhhhHHH--HHHHHHHHH------
Confidence 6788888877666532 3334566888999999999999998888776654 332222 223333222
Q ss_pred HHHHHHHHHHHcCCCCcHHHHHHHHHHHhhc----------CHHHHHHHHHHHhccCCHHHHHHHHHHHHHc--CCCCC-
Q 036072 401 DAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQ----------NAAVYTCLITGFGNRRRMDIVYDLLKEMEER--GCPPD- 467 (631)
Q Consensus 401 ~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~----------~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~- 467 (631)
..+... ..++..+...++..+... .......|...|...|++.+|.+++..+... |....
T Consensus 102 ---~~l~~~----~~~d~~~~~~~i~~l~~vte~kiflE~erarl~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~ 174 (445)
T 4b4t_P 102 ---EYLKSS----KSLDLNTRISVIETIRVVTENKIFVEVERARVTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMS 174 (445)
T ss_dssp ---HHHHHH----CTTHHHHHHHHHHCCSSSSSCCCCCCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHH
T ss_pred ---HHHhcC----CchhHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHH
Confidence 222111 112222232232222111 1223456788899999999999999998642 32222
Q ss_pred --HHHHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 468 --GLTYNALIKLMKIQKMPDEAVRIYKEMVR----SGFKPT--IHTYNMIMKSYFQTGNYEMGRKVWDEMIR 531 (631)
Q Consensus 468 --~~t~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~--~~t~~~Li~~~~~~g~~~~A~~~~~~m~~ 531 (631)
...+...+..|...+++.+|..++.++.. ....|+ ...|...+..+...+++.+|...|.++.+
T Consensus 175 ~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~~~~~~~~~~~e~~y~~a~~~y~e~~~ 246 (445)
T 4b4t_P 175 EKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEYYNLLVKISLHKREYLEVAQYLQEIYQ 246 (445)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 24677778889999999999999998753 222222 34567778888889999999888887764
|
| >2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A | Back alignment and structure |
|---|
Probab=87.23 E-value=23 Score=34.57 Aligned_cols=18 Identities=11% Similarity=-0.060 Sum_probs=14.1
Q ss_pred HHHcCCHHHHHHHHHHHH
Q 036072 548 LISQDRSGEAYKYLEEML 565 (631)
Q Consensus 548 ~~~~g~~~~A~~ll~~m~ 565 (631)
|...|+...|..+++...
T Consensus 198 yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 198 YLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHTTBHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHH
Confidence 456789999999888765
|
| >2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A* | Back alignment and structure |
|---|
Probab=86.59 E-value=2.4 Score=43.28 Aligned_cols=69 Identities=10% Similarity=0.057 Sum_probs=49.7
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHHHH
Q 036072 318 NCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMID-----KGFKPDVVAH 386 (631)
Q Consensus 318 ~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~ty 386 (631)
..++..+...|+.++|...+..+....+.+...|..+|.++.+.|+..+|++.|+.+.+ .|+.|...+-
T Consensus 175 ~~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~ 248 (388)
T 2ff4_A 175 TAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 248 (388)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHH
Confidence 44566667778888887777777666666777788888888888888888887777653 3777776543
|
| >1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A | Back alignment and structure |
|---|
Probab=84.49 E-value=5.8 Score=33.06 Aligned_cols=24 Identities=21% Similarity=0.192 Sum_probs=13.2
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHH
Q 036072 353 VLLGGWCRVKNLMEAGRVWNEMID 376 (631)
Q Consensus 353 ~Li~~~~~~g~~~~A~~l~~~m~~ 376 (631)
.|.-++.+.|++++|.+.++.+.+
T Consensus 79 ~LAvg~yklg~Y~~A~~~~~~lL~ 102 (126)
T 1nzn_A 79 YLAVGNYRLKEYEKALKYVRGLLQ 102 (126)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHH
Confidence 344455555555555555555555
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=83.85 E-value=33 Score=40.34 Aligned_cols=61 Identities=15% Similarity=-0.018 Sum_probs=27.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 351 YTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDV----VAHNIMLEGLLKIGKRSDAIKLFEVMKA 411 (631)
Q Consensus 351 y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~ty~~li~~~~~~g~~~~A~~ll~~m~~ 411 (631)
|..++..+.+.+.++.+.++-....+....-+. ..|..+.+++...|++++|...+-.+..
T Consensus 902 Y~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd 966 (1139)
T 4fhn_B 902 YLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLST 966 (1139)
T ss_dssp HHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCC
Confidence 344444555555555555444444332111111 1344455555555555555555544433
|
| >2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus} | Back alignment and structure |
|---|
Probab=83.61 E-value=4.7 Score=33.81 Aligned_cols=59 Identities=14% Similarity=0.166 Sum_probs=38.8
Q ss_pred HHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHH
Q 036072 297 KAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLL 355 (631)
Q Consensus 297 ~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li 355 (631)
+..+-++.+....+.|++.+....+++|.+.+++..|.++|+.++.+..+...+|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCchhhHHHHH
Confidence 44555555666666777777777777777777777777777777665555555566555
|
| >4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N | Back alignment and structure |
|---|
Probab=83.56 E-value=44 Score=37.95 Aligned_cols=157 Identities=13% Similarity=0.096 Sum_probs=89.0
Q ss_pred HHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHH--HHhcCChhHHHHHHHHHHHCCCCCCHHHHH--HHHHHHH
Q 036072 439 LITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKL--MKIQKMPDEAVRIYKEMVRSGFKPTIHTYN--MIMKSYF 514 (631)
Q Consensus 439 li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~--~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~--~Li~~~~ 514 (631)
|...+...|+.+....++..+.+. .+..+...+..+ +...|+.+.+..+.+.+.... .|....-. ++.-+|+
T Consensus 496 LGli~vGTgn~~ai~~LL~~~~e~---~~e~vrR~aalgLGll~~g~~e~~~~li~~L~~~~-dp~vRygaa~alglAya 571 (963)
T 4ady_A 496 MGLCMLGTGKPEAIHDMFTYSQET---QHGNITRGLAVGLALINYGRQELADDLITKMLASD-ESLLRYGGAFTIALAYA 571 (963)
T ss_dssp HHHHHTTCCCHHHHHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTCGGGGHHHHHHHHHCS-CHHHHHHHHHHHHHHTT
T ss_pred HhhhhcccCCHHHHHHHHHHHhcc---CcHHHHHHHHHHHHhhhCCChHHHHHHHHHHHhCC-CHHHHHHHHHHHHHHhc
Confidence 344456677877777777776654 233333334443 446788888888888887642 23332222 3345566
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH-HHHH
Q 036072 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS-YVLD 593 (631)
Q Consensus 515 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~-~~A~ 593 (631)
..|+.....+++..+.+.. ..+..-...+.-++...|+.+.+.++++.+.+.+ .|...--..+..+....|.. .+|.
T Consensus 572 GTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv~~L~~~~-d~~VR~gAalALGli~aGn~~~~ai 649 (963)
T 4ady_A 572 GTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIVQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAI 649 (963)
T ss_dssp TSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHTTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHH
T ss_pred CCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHH
Confidence 7788877777888887642 1133333333334445677666677776555543 33333333444444444443 4566
Q ss_pred HHHHHHHh
Q 036072 594 ELAQKMRF 601 (631)
Q Consensus 594 ~l~~~m~~ 601 (631)
..++++..
T Consensus 650 d~L~~L~~ 657 (963)
T 4ady_A 650 DVLDPLTK 657 (963)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHcc
Confidence 66666643
|
| >3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum} | Back alignment and structure |
|---|
Probab=80.22 E-value=48 Score=32.66 Aligned_cols=111 Identities=6% Similarity=0.009 Sum_probs=61.0
Q ss_pred HHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHH----HHHHHhCCCCcCHHHHHHHHH
Q 036072 247 TYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAI----FELMNKYKFKAGVDTINCLLE 322 (631)
Q Consensus 247 ~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v----~~~m~~~g~~~~~~~~~~Ll~ 322 (631)
+|-++..-|.+.+++++|++++..- ...+.+.|+...|-++ ++.+.+.++++|......|+.
T Consensus 37 ~~RTi~~Ry~~~k~y~eAidLL~~G--------------A~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~ 102 (336)
T 3lpz_A 37 ETRLVAARYSKQGNWAAAVDILASV--------------SQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLG 102 (336)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHH--------------HHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHH
T ss_pred HHHHHHHHHHhhcCHHHHHHHHHHH--------------HHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 4555666677778888888776442 2233444555444333 355555677777777777777
Q ss_pred HHHcCCChH-HHHHHHHHHh----c-c--cCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 036072 323 NLGRSKLPK-EAQLLFDKLK----H-R--FTPNLTTYTVLLGGWCRVKNLMEAGRVW 371 (631)
Q Consensus 323 ~~~~~g~~~-~A~~l~~~m~----~-~--~~p~~~~y~~Li~~~~~~g~~~~A~~l~ 371 (631)
.+.....-+ .=.++.+.+. + + -.-|......+...|.+.+++.+|..-|
T Consensus 103 L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ 159 (336)
T 3lpz_A 103 CLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHL 159 (336)
T ss_dssp HHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 666554321 1122222221 1 1 1235555666667777777776666655
|
| >4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-} | Back alignment and structure |
|---|
Probab=80.21 E-value=53 Score=38.52 Aligned_cols=226 Identities=11% Similarity=0.010 Sum_probs=129.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC------cHHHHHHHHH
Q 036072 353 VLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSP------NVRSYTIMIW 426 (631)
Q Consensus 353 ~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p------~~~~~~~li~ 426 (631)
.++..+.+.+.++.+.++.... +-+....-.+..+|...|++++|.+.|.+... |+.. .......+..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~~~~~~~~~ 890 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVLREFQEIAE 890 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSHHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhhcccccccc
Confidence 3445555666666665544332 22444444566788899999999999976532 2211 1112222221
Q ss_pred HHhhc--CHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCH----HHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC
Q 036072 427 KFCKQ--NAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDG----LTYNALIKLMKIQKMPDEAVRIYKEMVRSGFK 500 (631)
Q Consensus 427 ~~~~~--~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~----~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 500 (631)
..... -..-|.-++..+-+.+.++.+.++-....+....-+. ..|..+..++...|++++|...+-.+.....+
T Consensus 891 ~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~r 970 (1139)
T 4fhn_B 891 KYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPLK 970 (1139)
T ss_dssp TTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSSC
T ss_pred cccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHHH
Confidence 11111 2234667788888888888888877766554222222 25788899999999999999999888765443
Q ss_pred CCHHHHHHHHHHHHHcCCHHHH------------HHHHHHHHHc--CCCCCHHHHHHHHHHHHHcCCHHHHH-HHHHHHH
Q 036072 501 PTIHTYNMIMKSYFQTGNYEMG------------RKVWDEMIRR--GCCPDDNSYTVLIGGLISQDRSGEAY-KYLEEML 565 (631)
Q Consensus 501 p~~~t~~~Li~~~~~~g~~~~A------------~~~~~~m~~~--g~~p~~~t~~~li~~~~~~g~~~~A~-~ll~~m~ 565 (631)
...+..|+..+|..|..+.- .+++..-.+. .+...+.-|..|-.-+...|++.+|- -+|+.+.
T Consensus 971 --~~cLr~LV~~lce~~~~~~L~~lpf~gl~~~Vd~IL~~kAr~~~~~~~~p~Yy~iLYs~ri~r~dyR~AA~vmYe~~~ 1048 (1139)
T 4fhn_B 971 --KSCLLDFVNQLTKQGKINQLLNYSMPTLRQDVDNLLERKAFQMINVESQPCWYNILFSWRYKHQNYRDAAAIIYEKLS 1048 (1139)
T ss_dssp --HHHHHHHHHHHHHHCCHHHHHHHTTTSCHHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHhCCChhhhhCCCCccHHHHHHHHHHHHHHhCCccccCCCHHHHhHhhhhccCChHHHHHHHHHHHH
Confidence 46677788777777665543 3333221111 11111234555655566777775444 4455544
Q ss_pred HCC---CCCC-------HHHHHHHHHHHHhc
Q 036072 566 EKG---MKAP-------VLDYNKFAADLSRA 586 (631)
Q Consensus 566 ~~g---~~p~-------~~~~~~li~~~~~~ 586 (631)
+.+ -... ...|..+|+++.-.
T Consensus 1049 RL~~~~~~~~~~~~~~q~~~yL~~INaLslv 1079 (1139)
T 4fhn_B 1049 RYISTTELIGKKERTFIIEHYLIVLNTLELL 1079 (1139)
T ss_dssp HHHHHHCCCCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HhhhccccccchhHHHHHHHHHHHHHHHhcC
Confidence 321 1111 23466667766554
|
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
| ID | Alignment Graph | Length |
Definition |
Probability |
| Query | 631 | |||
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.82 | |
| d1w3ba_ | 388 | O-GlcNAc transferase p110 subunit, OGT {Human (Hom | 99.8 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.49 | |
| d1fcha_ | 323 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 99.46 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.03 | |
| d1hz4a_ | 366 | Transcription factor MalT domain III {Escherichia | 99.03 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.98 | |
| d2h6fa1 | 315 | Protein farnesyltransferase alpha-subunit {Human ( | 98.95 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.91 | |
| d2onda1 | 308 | Cleavage stimulation factor 77 kDa subunit CSTF3 { | 98.86 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.75 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.73 | |
| d1dcea1 | 334 | Rab geranylgeranyltransferase alpha-subunit, N-ter | 98.72 | |
| d1xnfa_ | 259 | Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | 98.7 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.38 | |
| d1qqea_ | 290 | Vesicular transport protein sec17 {Baker's yeast ( | 98.22 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.12 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.1 | |
| d1hh8a_ | 192 | Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {H | 98.09 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.07 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 98.04 | |
| d1elwa_ | 117 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 98.03 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 98.02 | |
| d1a17a_ | 159 | Protein phosphatase 5 {Human (Homo sapiens) [TaxId | 98.0 | |
| d1ouva_ | 265 | Cysteine rich protein C (HcpC) {Helicobacter pylor | 97.97 | |
| d2c2la1 | 201 | STIP1 homology and U box-containing protein 1, STU | 97.93 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.85 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.75 | |
| d1hxia_ | 112 | Peroxin pex5 (peroxisomal targeting signal 1 (PTS1 | 97.69 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.63 | |
| d1b89a_ | 336 | Clathrin heavy chain proximal leg segment {Cow (Bo | 97.61 | |
| d1nzna_ | 122 | Mitochondria fission protein Fis1 {Human (Homo sap | 97.55 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.54 | |
| d1p5qa1 | 170 | FKBP52 (FKBP4), C-terminal domain {Human (Homo sap | 97.5 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.41 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.29 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.23 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 97.2 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 97.17 | |
| d2fbna1 | 153 | Putative 70 kda peptidylprolyl isomerase PFL2275c | 97.17 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.16 | |
| d1ihga1 | 169 | Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | 97.11 | |
| d1elra_ | 128 | Hop {Human (Homo sapiens) [TaxId: 9606]} | 97.1 | |
| d2ff4a2 | 179 | Probable regulatory protein EmbR, middle domain {M | 97.06 | |
| d1kt1a1 | 168 | FKBP51, C-terminal domain {Monkey (Saimiri bolivie | 96.97 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 96.85 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.77 | |
| d1zbpa1 | 264 | Hypothetical protein VPA1032 {Vibrio parahaemolyti | 96.74 | |
| d1zu2a1 | 145 | Mitochondrial import receptor subunit tom20-3 {Tha | 96.47 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.2 | |
| d2hr2a1 | 156 | Hypothetical protein CT2138 {Chlorobium tepidum [T | 96.13 | |
| d1ya0a1 | 497 | SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | 95.77 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.92 | |
| d1klxa_ | 133 | Cysteine rich protein B (HcpB) {Helicobacter pylor | 94.86 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 94.84 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 94.46 | |
| d1tjca_ | 95 | Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human | 94.38 | |
| d1wy6a1 | 161 | Hypothetical protein ST1625 {Archaeon Sulfolobus t | 93.95 | |
| d1v54e_ | 105 | Cytochrome c oxidase subunit E {Cow (Bos taurus) [ | 88.02 | |
| d1qsaa1 | 450 | 70 KDa soluble lytic transglycosylase (SLT70), sup | 84.86 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 82.88 | |
| d2pqrb1 | 124 | Mitochondria fission protein Fis1 {Baker's yeast ( | 81.71 |
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.82 E-value=4.8e-16 Score=158.71 Aligned_cols=369 Identities=14% Similarity=0.035 Sum_probs=286.4
Q ss_pred hhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHH
Q 036072 226 RPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELM 305 (631)
Q Consensus 226 ~~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m 305 (631)
+.|.+.|..+.+.. +-+...|..+..++.+.|++++|...|++..+..+.+..++..+..++...|++++|++.+...
T Consensus 16 ~~A~~~~~~~l~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~g~~~~A~~~~~~~ 93 (388)
T d1w3ba_ 16 EAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQEAIEHYRHA 93 (388)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHhhhhccccccccccccc
Confidence 34777776654322 2247788888888888899999999998888887777888888888888999999999888888
Q ss_pred HhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHH
Q 036072 306 NKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVA 385 (631)
Q Consensus 306 ~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t 385 (631)
.+.. +.+..............+....+............................+....+...+....... .-+...
T Consensus 94 ~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 171 (388)
T d1w3ba_ 94 LRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVA 171 (388)
T ss_dssp HHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred cccc-cccccccccccccccccccccccccccccccccccccccccccccccccccchhhhhHHHHHHhhccC-cchhHH
Confidence 8765 44455555555555555666666666555554444556666677777778888888888888877653 335677
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC
Q 036072 386 HNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP 465 (631)
Q Consensus 386 y~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 465 (631)
+..+...+...|++++|...++...+. .|+ +..+|..+...+...|++++|...+.........
T Consensus 172 ~~~l~~~~~~~~~~~~A~~~~~~al~~--~p~--------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 235 (388)
T d1w3ba_ 172 WSNLGCVFNAQGEIWLAIHHFEKAVTL--DPN--------------FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPN 235 (388)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHH--CTT--------------CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTT
T ss_pred HHhhcccccccCcHHHHHHHHHHHHHh--Ccc--------------cHHHHHHHhhhhhccccHHHHHHHHHHhHHHhhh
Confidence 788888899999999999999988774 343 4456677788899999999999999998876443
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036072 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545 (631)
Q Consensus 466 p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li 545 (631)
+...+..+...+.+.|++++|...|++..+.. +-+..++..+..+|...|++++|.+.++...... +.+...+..+.
T Consensus 236 -~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 312 (388)
T d1w3ba_ 236 -HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLA 312 (388)
T ss_dssp -CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred -HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-CccchhhhHHH
Confidence 67778888899999999999999999998864 3457888999999999999999999999988764 34788889999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHhhh
Q 036072 546 GGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARWAETTK 619 (631)
Q Consensus 546 ~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~l~~~~~~~k 619 (631)
..+...|++++|++.+++.++.. +-+...+..+..+|.+.|++++|.+.+++..+... .....+...+...+
T Consensus 313 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~P-~~~~a~~~lg~~~~ 384 (388)
T d1w3ba_ 313 NIKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISP-TFADAYSNMGNTLK 384 (388)
T ss_dssp HHHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCT-TCHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHH
Confidence 99999999999999999998753 33567788999999999999999999999876542 33445555554443
|
| >d1w3ba_ a.118.8.1 (A:) O-GlcNAc transferase p110 subunit, OGT {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: O-GlcNAc transferase p110 subunit, OGT species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.80 E-value=8.5e-16 Score=156.81 Aligned_cols=345 Identities=12% Similarity=0.035 Sum_probs=280.3
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCCh
Q 036072 251 MMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLP 330 (631)
Q Consensus 251 li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~ 330 (631)
+...+-+.|++++|.++++++.+..+-+..++..+..+|...|++++|++.|+...+.. +-+..++..+..+|.+.|++
T Consensus 5 la~~~~~~G~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~l~~~~~~~g~~ 83 (388)
T d1w3ba_ 5 LAHREYQAGDFEAAERHCMQLWRQEPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQL 83 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHhhhhccc
Confidence 34556788999999999999998888788899999999999999999999999998875 55778899999999999999
Q ss_pred HHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036072 331 KEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMK 410 (631)
Q Consensus 331 ~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~ 410 (631)
++|...+....+..+.+...+..........+....+............. ...............+....+...+....
T Consensus 84 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 162 (388)
T d1w3ba_ 84 QEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAI 162 (388)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccccccchhhhhHHHHHHhh
Confidence 99999999988776667777777777777777777777777776665433 44445556666777788888888887776
Q ss_pred HcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 036072 411 AKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRI 490 (631)
Q Consensus 411 ~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l 490 (631)
... |+ ....+..+...+...|++++|...+....+.... +...|..+...+...|++++|...
T Consensus 163 ~~~--~~--------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~ 225 (388)
T d1w3ba_ 163 ETQ--PN--------------FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLDPN-FLDAYINLGNVLKEARIFDRAVAA 225 (388)
T ss_dssp HHC--TT--------------CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTTTCTTHHHHH
T ss_pred ccC--cc--------------hhHHHHhhcccccccCcHHHHHHHHHHHHHhCcc-cHHHHHHHhhhhhccccHHHHHHH
Confidence 643 33 3445666778888899999999999998876432 677888999999999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC
Q 036072 491 YKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMK 570 (631)
Q Consensus 491 ~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~ 570 (631)
+++..+.. ..+...+..+..+|...|++++|...|++..+.... +..+|..+...+...|++++|.+.++...... +
T Consensus 226 ~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~ 302 (388)
T d1w3ba_ 226 YLRALSLS-PNHAVVHGNLACVYYEQGLIDLAIDTYRRAIELQPH-FPDAYCNLANALKEKGSVAEAEDCYNTALRLC-P 302 (388)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCSS-CHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-T
T ss_pred HHHhHHHh-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHhhhccC-C
Confidence 99998865 456778888999999999999999999999886433 67889999999999999999999999998764 6
Q ss_pred CCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHhh
Q 036072 571 APVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKFEVSNVLARWAETT 618 (631)
Q Consensus 571 p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~l~~~~~~~ 618 (631)
.+...+..+..++.+.|++++|++.+++..+... ....++...+...
T Consensus 303 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~la~~~ 349 (388)
T d1w3ba_ 303 THADSLNNLANIKREQGNIEEAVRLYRKALEVFP-EFAAAHSNLASVL 349 (388)
T ss_dssp TCHHHHHHHHHHHHTTTCHHHHHHHHHHHTTSCT-TCHHHHHHHHHHH
T ss_pred ccchhhhHHHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHH
Confidence 6778899999999999999999999999876443 2333443444433
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.49 E-value=8.6e-12 Score=124.33 Aligned_cols=265 Identities=12% Similarity=-0.013 Sum_probs=156.9
Q ss_pred HHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 036072 324 LGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAI 403 (631)
Q Consensus 324 ~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~ 403 (631)
+.+.|++++|...|+++.+..+.+..+|..+..+|...|++++|...|++..+.. +-+...|..+...|...|++++|.
T Consensus 29 ~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~A~ 107 (323)
T d1fcha_ 29 RLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQAC 107 (323)
T ss_dssp HHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccccccccc
Confidence 3444444444444444444333344444444445555555555555554444431 113344444444455555555555
Q ss_pred HHHHHHHHcCCCCcHHHHHH-HHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHhc
Q 036072 404 KLFEVMKAKGPSPNVRSYTI-MIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERG-CPPDGLTYNALIKLMKIQ 481 (631)
Q Consensus 404 ~ll~~m~~~g~~p~~~~~~~-li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g-~~p~~~t~~~li~~~~~~ 481 (631)
+.++.+.... |+...... ........+.......+..+...+.+.+|.+.|....+.. -..+...+..+...+...
T Consensus 108 ~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~p~~~~~~~~~~l~~~~~~~ 185 (323)
T d1fcha_ 108 EILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLS 185 (323)
T ss_dssp HHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHT
T ss_pred cchhhHHHhc--cchHHHHHhhhhhhhhcccccchhhHHHHHHhhHHHHHHHHHHHHHHHhhcccccccchhhHHHHHHH
Confidence 5554444321 11000000 0000000000011111222334456778888888776543 234677888888899999
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHH
Q 036072 482 KMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYL 561 (631)
Q Consensus 482 g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll 561 (631)
|++++|+..|++..+.. +-+..+|..+..+|...|++++|.+.|++.++.... +..+|..+..+|.+.|++++|++.|
T Consensus 186 ~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~g~~~~A~~~~ 263 (323)
T d1fcha_ 186 GEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQPG-YIRSRYNLGISCINLGAHREAVEHF 263 (323)
T ss_dssp TCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHhhhhcccccccccc-cccccchhhhhhcccccccchhHHHHHHHHHHHhhc-cHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 99999999999988753 335788999999999999999999999999886432 6778999999999999999999999
Q ss_pred HHHHHC----------CCCCCHHHHHHHHHHHHhcCCHHHHH
Q 036072 562 EEMLEK----------GMKAPVLDYNKFAADLSRAGRSYVLD 593 (631)
Q Consensus 562 ~~m~~~----------g~~p~~~~~~~li~~~~~~g~~~~A~ 593 (631)
++.++. ........|..+-.++...|+.+.+.
T Consensus 264 ~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~ 305 (323)
T d1fcha_ 264 LEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 305 (323)
T ss_dssp HHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 998763 11122335666667777777765543
|
| >d1fcha_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.46 E-value=4.2e-11 Score=119.16 Aligned_cols=271 Identities=14% Similarity=0.052 Sum_probs=173.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCCh
Q 036072 251 MMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLP 330 (631)
Q Consensus 251 li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~ 330 (631)
....+.+.|++++|+..|+++.+..+-+..+|..+..++...|++++|+..|+...+.. +-+...+..+...|...|++
T Consensus 25 ~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~ 103 (323)
T d1fcha_ 25 EGLRRLQEGDLPNAVLLFEAAVQQDPKHMEAWQYLGTTQAENEQELLAISALRRCLELK-PDNQTALMALAVSFTNESLQ 103 (323)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHhhhccc-cccccccccccccccccccc
Confidence 34456677888888888888877777777777777777888888888888877777654 34566677777777777777
Q ss_pred HHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036072 331 KEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMK 410 (631)
Q Consensus 331 ~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~ 410 (631)
++|.+.++......+.....+........ ..+.......+..+...+...+|.+.+....
T Consensus 104 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al 163 (323)
T d1fcha_ 104 RQACEILRDWLRYTPAYAHLVTPAEEGAG--------------------GAGLGPSKRILGSLLSDSLFLEVKELFLAAV 163 (323)
T ss_dssp HHHHHHHHHHHHTSTTTGGGCC-----------------------------------CTTHHHHHHHHHHHHHHHHHHHH
T ss_pred cccccchhhHHHhccchHHHHHhhhhhhh--------------------hcccccchhhHHHHHHhhHHHHHHHHHHHHH
Confidence 77777777765432221111111000000 0000111112223334455667777777665
Q ss_pred HcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHH
Q 036072 411 AKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRI 490 (631)
Q Consensus 411 ~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l 490 (631)
+...... +..++..+...+...|++++|...|++....... +...|..+...|...|++++|.+.
T Consensus 164 ~~~p~~~--------------~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~ 228 (323)
T d1fcha_ 164 RLDPTSI--------------DPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPN-DYLLWNKLGATLANGNQSEEAVAA 228 (323)
T ss_dssp HHSTTSC--------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHhhccc--------------ccccchhhHHHHHHHHHHhhhhcccccccccccc-cccchhhhhhcccccccchhHHHH
Confidence 5322111 2344556667777888899999888887765332 577888888889999999999999
Q ss_pred HHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC----------CCCCHHHHHHHHHHHHHcCCHHHHH
Q 036072 491 YKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG----------CCPDDNSYTVLIGGLISQDRSGEAY 558 (631)
Q Consensus 491 ~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g----------~~p~~~t~~~li~~~~~~g~~~~A~ 558 (631)
|++..+.. +-+...+..+..+|.+.|++++|...|++.++.. .......|..+-.++...|+.+.+.
T Consensus 229 ~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~~~~~~l~~al~~~~~~d~~~ 305 (323)
T d1fcha_ 229 YRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYG 305 (323)
T ss_dssp HHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHH
T ss_pred HHHHHHHh-hccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcChhhhhhhHHHHHHHHHHHHHHHHHcCCHHHHH
Confidence 99888753 2356778889999999999999999999887631 1112345566666666666665443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.03 E-value=2.8e-07 Score=90.89 Aligned_cols=297 Identities=12% Similarity=-0.000 Sum_probs=168.6
Q ss_pred HHHHHHccCHHHHHHHHHHHHhCCCCcC----HHHHHHHHHHHHcCCChHHHHHHHHHHhcc---cC---CChhhHHHHH
Q 036072 286 MNAFAAAKERKKAVAIFELMNKYKFKAG----VDTINCLLENLGRSKLPKEAQLLFDKLKHR---FT---PNLTTYTVLL 355 (631)
Q Consensus 286 i~~~~~~g~~~~A~~v~~~m~~~g~~~~----~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~---~~---p~~~~y~~Li 355 (631)
...+...|++++|+++++...+..-..+ ..++..+..+|...|++++|...|++..+. .. .....+..+.
T Consensus 19 A~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 98 (366)
T d1hz4a_ 19 AQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQS 98 (366)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 3344455555555555555544321111 223444555555566666666666554321 10 1123445555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHc----CCCCC---HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHH
Q 036072 356 GGWCRVKNLMEAGRVWNEMIDK----GFKPD---VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKF 428 (631)
Q Consensus 356 ~~~~~~g~~~~A~~l~~~m~~~----g~~p~---~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~ 428 (631)
..+...|++..+...+...... +.... ...+..+...+...|+++.+...+..............
T Consensus 99 ~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-------- 170 (366)
T d1hz4a_ 99 EILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQ-------- 170 (366)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGG--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhh--------
Confidence 6666677777777766655431 11111 22444555667777888888877777665432211111
Q ss_pred hhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHc--CCCCC----HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC--
Q 036072 429 CKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEER--GCPPD----GLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFK-- 500 (631)
Q Consensus 429 ~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~----~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-- 500 (631)
....+..+...+...++...+...+...... ..... ...+..+...+...|++++|...+....+....
T Consensus 171 ---~~~~~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 247 (366)
T d1hz4a_ 171 ---QLQCLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANN 247 (366)
T ss_dssp ---GHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTC
T ss_pred ---HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCchHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccc
Confidence 1122333445566667777777777665432 11111 224555666778889999999998877653222
Q ss_pred -CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH----cCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC----CCC
Q 036072 501 -PTIHTYNMIMKSYFQTGNYEMGRKVWDEMIR----RGCCPD-DNSYTVLIGGLISQDRSGEAYKYLEEMLEK----GMK 570 (631)
Q Consensus 501 -p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~----~g~~p~-~~t~~~li~~~~~~g~~~~A~~ll~~m~~~----g~~ 570 (631)
.....+..+..+|...|++++|...+++... .+..|+ ..++..+...|...|++++|.+.+++.++. |..
T Consensus 248 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~l~~~~~~~ 327 (366)
T d1hz4a_ 248 HFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALKLANRTGFI 327 (366)
T ss_dssp GGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCCC
T ss_pred hHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhhcCcH
Confidence 2245566788889999999999999988764 233333 456777788889999999999999887653 321
Q ss_pred C----CHHHHHHHHHHHHhcCCHHHHH
Q 036072 571 A----PVLDYNKFAADLSRAGRSYVLD 593 (631)
Q Consensus 571 p----~~~~~~~li~~~~~~g~~~~A~ 593 (631)
. ....+..++..+...++.++++
T Consensus 328 ~~~~~~~~~~~~~~~~l~~~~~l~e~e 354 (366)
T d1hz4a_ 328 SHFVIEGEAMAQQLRQLIQLNTLPELE 354 (366)
T ss_dssp HHHHTTHHHHHHHHHHHHHTTCSCHHH
T ss_pred HHHHHHHHHHHHHHHHHHhcCCChHHH
Confidence 1 1122344445555555554443
|
| >d1hz4a_ a.118.8.2 (A:) Transcription factor MalT domain III {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Transcription factor MalT domain III domain: Transcription factor MalT domain III species: Escherichia coli [TaxId: 562]
Probab=99.03 E-value=1.2e-07 Score=93.62 Aligned_cols=273 Identities=8% Similarity=-0.019 Sum_probs=198.0
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCC-----HHHHHHHHHHHHHccCHHHHHHHHHHHHhCC----C-CcCHHHH
Q 036072 248 YNSMMSILGRARQFETMVSMLEEMGEKGLLS-----METFKIAMNAFAAAKERKKAVAIFELMNKYK----F-KAGVDTI 317 (631)
Q Consensus 248 y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~-----~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g----~-~~~~~~~ 317 (631)
.......+...|++++|+.++++..+..+.+ ..++..+..++...|++++|+..|+...+.. . ......+
T Consensus 15 ~~lrA~~~~~~g~~~~A~~~~~~aL~~~~~~~~~~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 94 (366)
T d1hz4a_ 15 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 94 (366)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHhhCcCCCcHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcchHHHHHHH
Confidence 3344566788999999999999988766532 2367778889999999999999999887532 1 1123445
Q ss_pred HHHHHHHHcCCChHHHHHHHHHHhcc-----cC--C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC----CCCCHHH
Q 036072 318 NCLLENLGRSKLPKEAQLLFDKLKHR-----FT--P-NLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKG----FKPDVVA 385 (631)
Q Consensus 318 ~~Ll~~~~~~g~~~~A~~l~~~m~~~-----~~--p-~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g----~~p~~~t 385 (631)
..+...+...|++..+...+...... .. + ....+..+...+...|+++.+...+....... ......+
T Consensus 95 ~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 174 (366)
T d1hz4a_ 95 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 174 (366)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhHhcccchhhHHHHHHHHHHHHHHHhcchhhhHHHHHHHHHHhhhhhhhhHHHH
Confidence 66777888999999999988875421 11 1 12356667788999999999999999887642 2233556
Q ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHcC--CCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcC
Q 036072 386 HNIMLEGLLKIGKRSDAIKLFEVMKAKG--PSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERG 463 (631)
Q Consensus 386 y~~li~~~~~~g~~~~A~~ll~~m~~~g--~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 463 (631)
+..+...+...++...+...+.+..... ....... ....+..+...+...|+++.|...+....+..
T Consensus 175 ~~~~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~ 243 (366)
T d1hz4a_ 175 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDW-----------ISNANKVRVIYWQMTGDKAAAANWLRHTAKPE 243 (366)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHH-----------HHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCC
T ss_pred HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhcccCch-----------HHHHHHHHHHHHHhcccHHHHHHHHHHHHHhc
Confidence 6677778888999999998887765421 1111111 12234556677888999999999998765543
Q ss_pred CCC---CHHHHHHHHHHHHhcCChhHHHHHHHHHHH----CCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 464 CPP---DGLTYNALIKLMKIQKMPDEAVRIYKEMVR----SGFKPT-IHTYNMIMKSYFQTGNYEMGRKVWDEMIR 531 (631)
Q Consensus 464 ~~p---~~~t~~~li~~~~~~g~~~~A~~l~~~m~~----~g~~p~-~~t~~~Li~~~~~~g~~~~A~~~~~~m~~ 531 (631)
... ....+..+..++...|++++|...++.+.. .+..|+ ..++..+..+|...|++++|.+.+++..+
T Consensus 244 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~Al~ 319 (366)
T d1hz4a_ 244 FANNHFLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 319 (366)
T ss_dssp CTTCGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhcccChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 222 244566778899999999999999998764 344443 45678888999999999999999998765
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.98 E-value=1.5e-07 Score=92.87 Aligned_cols=166 Identities=6% Similarity=-0.009 Sum_probs=135.9
Q ss_pred HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHcc-CHHHHHHHHHHHHhCCCCcCHHHHHHHHHH
Q 036072 245 SRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAK-ERKKAVAIFELMNKYKFKAGVDTINCLLEN 323 (631)
Q Consensus 245 ~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g-~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~ 323 (631)
...|+.+-.++.+.+.+++|+.+++++.+.++-+..+|+....++...| ++++|++.++...+.. +-+..+|+.+...
T Consensus 43 ~~a~~~~~~~~~~~e~~~~Al~~~~~ai~lnP~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~-p~~~~a~~~~~~~ 121 (315)
T d2h6fa1 43 RDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ-PKNYQVWHHRRVL 121 (315)
T ss_dssp HHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHHCCCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHH-HhhhhHHHHHhHH
Confidence 4566777777888899999999999999998888889999988888876 4899999999988875 5678889988889
Q ss_pred HHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-----
Q 036072 324 LGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGK----- 398 (631)
Q Consensus 324 ~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~----- 398 (631)
+.+.|++++|...++++.+..+.+...|+.+...+.+.|++++|++.++.+.+... -+...|+.+...+.+.+.
T Consensus 122 ~~~l~~~~eAl~~~~kal~~dp~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~p-~n~~a~~~r~~~l~~~~~~~~~~ 200 (315)
T d2h6fa1 122 VEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKEDV-RNNSVWNQRYFVISNTTGYNDRA 200 (315)
T ss_dssp HHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCSCSHH
T ss_pred HHhhccHHHHHHHHhhhhhhhhcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHCC-ccHHHHHHHHHHHHHccccchhh
Confidence 99999999999999998887777888999999999999999999999999988642 256677776666666554
Q ss_pred -HHHHHHHHHHHHHc
Q 036072 399 -RSDAIKLFEVMKAK 412 (631)
Q Consensus 399 -~~~A~~ll~~m~~~ 412 (631)
+++|++.+....+.
T Consensus 201 ~~~~ai~~~~~al~~ 215 (315)
T d2h6fa1 201 VLEREVQYTLEMIKL 215 (315)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred hhHHhHHHHHHHHHh
Confidence 45677666666654
|
| >d2h6fa1 a.118.6.1 (A:55-369) Protein farnesyltransferase alpha-subunit {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Protein farnesyltransferase alpha-subunit species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.95 E-value=2.4e-07 Score=91.34 Aligned_cols=216 Identities=6% Similarity=0.001 Sum_probs=162.7
Q ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCC-ChHHHHHHHHHHhcccCCChhhHHHHHHHH
Q 036072 280 ETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSK-LPKEAQLLFDKLKHRFTPNLTTYTVLLGGW 358 (631)
Q Consensus 280 ~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g-~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~ 358 (631)
++++.+...+.+.+..++|+++++.+++.. +-+...|+....++...| ++++|...++...+..+-+..+|+.+...+
T Consensus 44 ~a~~~~~~~~~~~e~~~~Al~~~~~ai~ln-P~~~~a~~~r~~~l~~l~~~~~eal~~~~~al~~~p~~~~a~~~~~~~~ 122 (315)
T d2h6fa1 44 DVYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLV 122 (315)
T ss_dssp HHHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCchHHHHHHHHHHHHHC-CCChHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHHHhhhhHHHHHhHHH
Confidence 467777788888999999999999999986 667778888888888776 589999999998877777899999999999
Q ss_pred HhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHH
Q 036072 359 CRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTC 438 (631)
Q Consensus 359 ~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~ 438 (631)
.+.|++++|++.++.+.+.. +-+...|..+...+.+.|++++|++.++.+.+.. |+ +..+|+.
T Consensus 123 ~~l~~~~eAl~~~~kal~~d-p~n~~a~~~~~~~~~~~~~~~~Al~~~~~al~~~--p~--------------n~~a~~~ 185 (315)
T d2h6fa1 123 EWLRDPSQELEFIADILNQD-AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VR--------------NNSVWNQ 185 (315)
T ss_dssp HHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TT--------------CHHHHHH
T ss_pred HhhccHHHHHHHHhhhhhhh-hcchHHHHHHHHHHHHHHhhHHHHHHHHHHHHHC--Cc--------------cHHHHHH
Confidence 99999999999999999863 3368899999999999999999999999998853 33 3334444
Q ss_pred HHHHHhccC------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCC-CCHHHHHHHHH
Q 036072 439 LITGFGNRR------RMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFK-PTIHTYNMIMK 511 (631)
Q Consensus 439 li~~~~~~g------~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~~~t~~~Li~ 511 (631)
+...+.+.+ .+++|++.+....+... -+...|+.+...+. ....+++.+.++...+.... .+...+..++.
T Consensus 186 r~~~l~~~~~~~~~~~~~~ai~~~~~al~~~P-~~~~~~~~l~~ll~-~~~~~~~~~~~~~~~~l~~~~~~~~~~~~l~~ 263 (315)
T d2h6fa1 186 RYFVISNTTGYNDRAVLEREVQYTLEMIKLVP-HNESAWNYLKGILQ-DRGLSKYPNLLNQLLDLQPSHSSPYLIAFLVD 263 (315)
T ss_dssp HHHHHHHTTCSCSHHHHHHHHHHHHHHHHHST-TCHHHHHHHHHHHT-TTCGGGCHHHHHHHHHHTTTCCCHHHHHHHHH
T ss_pred HHHHHHHccccchhhhhHHhHHHHHHHHHhCC-CchHHHHHHHHHHH-hcChHHHHHHHHHHHHhCCCcCCHHHHHHHHH
Confidence 433333333 36788888888777643 26677776665554 34457777777777663222 24555666666
Q ss_pred HHHH
Q 036072 512 SYFQ 515 (631)
Q Consensus 512 ~~~~ 515 (631)
.|..
T Consensus 264 ~y~~ 267 (315)
T d2h6fa1 264 IYED 267 (315)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6543
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.91 E-value=2.8e-07 Score=90.41 Aligned_cols=185 Identities=8% Similarity=0.067 Sum_probs=106.0
Q ss_pred HHHHHHHHHHhcc-cCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 036072 331 KEAQLLFDKLKHR-FTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVM 409 (631)
Q Consensus 331 ~~A~~l~~~m~~~-~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m 409 (631)
++|..+|+...+. .+.+...|..++....+.|+++.|..+|+.+.+.........|...+..+.+.|+.+.|.++|..+
T Consensus 81 ~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~~~~~a~~i~~~~l~~~~~~~~~~w~~~~~~~~~~~~~~~ar~i~~~a 160 (308)
T d2onda1 81 DEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKA 160 (308)
T ss_dssp HHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHcCChHHHHHHHHHH
Confidence 4555555554433 223344555555666666666666666666655432222345666666666666666666666666
Q ss_pred HHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHH-HHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHH
Q 036072 410 KAKGPSPNVRSYTIMIWKFCKQNAAVYTCLIT-GFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAV 488 (631)
Q Consensus 410 ~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~-~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~ 488 (631)
.+.+.... .. |..... -+...|+.+.|..+|+.+.+. .+-+...|...+..+...|+.+.|.
T Consensus 161 l~~~~~~~-~~---------------~~~~a~~e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR 223 (308)
T d2onda1 161 REDARTRH-HV---------------YVTAALMEYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTR 223 (308)
T ss_dssp HTSTTCCT-HH---------------HHHHHHHHHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHhCCCcH-HH---------------HHHHHHHHHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHH
Confidence 55432211 11 111111 122245677777777776665 2335667777777777777777777
Q ss_pred HHHHHHHHCC-CCCC--HHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036072 489 RIYKEMVRSG-FKPT--IHTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532 (631)
Q Consensus 489 ~l~~~m~~~g-~~p~--~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~ 532 (631)
.+|++..+.. ..|. ...|...+..-...|+.+.+.++++++.+.
T Consensus 224 ~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~~~~~~~~~~r~~~~ 270 (308)
T d2onda1 224 VLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 7777776642 2332 456677776666777777777777776653
|
| >d2onda1 a.118.8.7 (A:242-549) Cleavage stimulation factor 77 kDa subunit CSTF3 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: HAT/Suf repeat domain: Cleavage stimulation factor 77 kDa subunit CSTF3 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.86 E-value=5.3e-07 Score=88.38 Aligned_cols=218 Identities=8% Similarity=0.006 Sum_probs=130.2
Q ss_pred HHHHHHHHHhcccCCChhhHHHHHHHHHh--------------cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 036072 332 EAQLLFDKLKHRFTPNLTTYTVLLGGWCR--------------VKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIG 397 (631)
Q Consensus 332 ~A~~l~~~m~~~~~p~~~~y~~Li~~~~~--------------~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g 397 (631)
.+..+|+++...++-+...|...+..+.+ .+..++|..+|+...+...+.+...|...+..+.+.|
T Consensus 34 Rv~~vyerAl~~~~~~~~lW~~y~~~~~~~~~~~~~~~~~~~~~~~~~~a~~i~~ral~~~~p~~~~l~~~ya~~~~~~~ 113 (308)
T d2onda1 34 RVMFAYEQCLLVLGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRM 113 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCchHHHHHHHhhcccchHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhcc
Confidence 34445555554444455555555443322 2345778888888776544556667777778888888
Q ss_pred CHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH-
Q 036072 398 KRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIK- 476 (631)
Q Consensus 398 ~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~- 476 (631)
+++.|..+|+.+.+....... .+|...+..+.+.|+.+.|.++|..+.+.+.. +...|.....
T Consensus 114 ~~~~a~~i~~~~l~~~~~~~~---------------~~w~~~~~~~~~~~~~~~ar~i~~~al~~~~~-~~~~~~~~a~~ 177 (308)
T d2onda1 114 KYEKVHSIYNRLLAIEDIDPT---------------LVYIQYMKFARRAEGIKSGRMIFKKAREDART-RHHVYVTAALM 177 (308)
T ss_dssp CHHHHHHHHHHHHTSSSSCTH---------------HHHHHHHHHHHHHHCHHHHHHHHHHHHTSTTC-CTHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhcCChH---------------HHHHHHHHHHHHcCChHHHHHHHHHHHHhCCC-cHHHHHHHHHH
Confidence 888888888887764222111 23444555566667777777777777665433 2233332222
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCC--CHHHHHHHHHHHHHcCC
Q 036072 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRG-CCP--DDNSYTVLIGGLISQDR 553 (631)
Q Consensus 477 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g-~~p--~~~t~~~li~~~~~~g~ 553 (631)
-+...|+.+.|..+|+.+.+. .+.+...+...++.+...|+++.|..+|++.+... ..| ....|...+..-...|+
T Consensus 178 e~~~~~~~~~a~~i~e~~l~~-~p~~~~~w~~y~~~~~~~g~~~~aR~~fe~ai~~~~~~~~~~~~iw~~~~~fE~~~G~ 256 (308)
T d2onda1 178 EYYCSKDKSVAFKIFELGLKK-YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGD 256 (308)
T ss_dssp HHHTSCCHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSC
T ss_pred HHHhccCHHHHHHHHHHHHHh-hhhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHcCC
Confidence 233456677777777777664 23345666666777677777777777777766542 222 23456666665566677
Q ss_pred HHHHHHHHHHHHH
Q 036072 554 SGEAYKYLEEMLE 566 (631)
Q Consensus 554 ~~~A~~ll~~m~~ 566 (631)
.+.+.++++++.+
T Consensus 257 ~~~~~~~~~r~~~ 269 (308)
T d2onda1 257 LASILKVEKRRFT 269 (308)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777776666654
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.75 E-value=2.4e-08 Score=99.42 Aligned_cols=230 Identities=7% Similarity=-0.035 Sum_probs=120.8
Q ss_pred ChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHHHcCCCCCHHHHHHH-HHHHHHcCCHHHHHHH
Q 036072 329 LPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVK--NLMEAGRVWNEMIDKGFKPDVVAHNIM-LEGLLKIGKRSDAIKL 405 (631)
Q Consensus 329 ~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g--~~~~A~~l~~~m~~~g~~p~~~ty~~l-i~~~~~~g~~~~A~~l 405 (631)
.+++|+.+++...+..+.+...|..+..++...+ ++++|...++.+.+.. ..+...+... ...+...+..++|++.
T Consensus 88 ~~~~al~~~~~~l~~~pk~~~~~~~~~~~~~~~~~~~~~~a~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~Al~~ 166 (334)
T d1dcea1 88 LVKAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 166 (334)
T ss_dssp HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCCcHHHHHHhhHHHHHhccccHHHHHHHHHHHHhhC-chhhhhhhhHHHHHHHhccccHHHHHH
Confidence 3445555555554444445555555555544443 3555655555555541 1233333322 2344445556666666
Q ss_pred HHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChh
Q 036072 406 FEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPD 485 (631)
Q Consensus 406 l~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~ 485 (631)
++.+.+. .|+ +..+|+.+...+.+.|++++|...+....+. ... ...+...+...+..+
T Consensus 167 ~~~~i~~--~p~--------------~~~a~~~l~~~~~~~~~~~~A~~~~~~~~~~----~~~-~~~~~~~~~~l~~~~ 225 (334)
T d1dcea1 167 TDSLITR--NFS--------------NYSSWHYRSCLLPQLHPQPDSGPQGRLPENV----LLK-ELELVQNAFFTDPND 225 (334)
T ss_dssp HHTTTTT--TCC--------------CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHH----HHH-HHHHHHHHHHHCSSC
T ss_pred HHHHHHc--CCC--------------CHHHHHHHHHHHHHhcCHHHHHHHHHHhHHh----HHH-HHHHHHHHHHhcchh
Confidence 5555443 222 3334444455555555554444333322221 000 111222344456666
Q ss_pred HHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Q 036072 486 EAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEML 565 (631)
Q Consensus 486 ~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~ 565 (631)
++...+....... .++...+..+...+...|+.++|...+.+..+.... +..+|..+...|...|+.++|.+.++++.
T Consensus 226 ~a~~~~~~~l~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~eA~~~~~~ai 303 (334)
T d1dcea1 226 QSAWFYHRWLLGR-AEPLFRCELSVEKSTVLQSELESCKELQELEPENKW-CLLTIILLMRALDPLLYEKETLQYFSTLK 303 (334)
T ss_dssp SHHHHHHHHHHSC-CCCSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHH-HHHHHHHHHHHHCTGGGHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC-cchhhHHHHHHHHHHHHhhHHHHHHHHHHHHhhCch-HHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 6777777666543 334445556666677777888888887777665322 45566667777778888888888888887
Q ss_pred HCCCCCC-HHHHHHHHHHHH
Q 036072 566 EKGMKAP-VLDYNKFAADLS 584 (631)
Q Consensus 566 ~~g~~p~-~~~~~~li~~~~ 584 (631)
+. .|+ ..-|..|...+.
T Consensus 304 ~l--dP~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 304 AV--DPMRAAYLDDLRSKFL 321 (334)
T ss_dssp HH--CGGGHHHHHHHHHHHH
T ss_pred HH--CcccHHHHHHHHHHHh
Confidence 74 343 333444444443
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.73 E-value=2.4e-06 Score=80.79 Aligned_cols=149 Identities=11% Similarity=-0.081 Sum_probs=92.3
Q ss_pred hhHHHHHHHHHHHCCCCC----HHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHH
Q 036072 261 FETMVSMLEEMGEKGLLS----METFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLL 336 (631)
Q Consensus 261 ~~~A~~l~~~m~~~g~~~----~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l 336 (631)
.+.++.-+++.......+ ..+|..+..+|...|++++|++.|+..++.. +-++.+|+.+..+|.+.|++++|...
T Consensus 15 ~e~al~~~~e~l~~~~~~~~~~a~~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~ 93 (259)
T d1xnfa_ 15 QEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEA 93 (259)
T ss_dssp HHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhh
Confidence 344555555555443322 2356666677777777777777777777654 45667777777777777777777777
Q ss_pred HHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 337 FDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKA 411 (631)
Q Consensus 337 ~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~ 411 (631)
|++..+..+.+..++..+..+|...|++++|.+.|+...+.. +.+......+..++.+.+..+.+..+......
T Consensus 94 ~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (259)
T d1xnfa_ 94 FDSVLELDPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQDD-PNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK 167 (259)
T ss_dssp HHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH
T ss_pred hhHHHHHHhhhhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhc-cccHHHHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 777766555566677777777777777777777777776653 22333333333444455555544444444443
|
| >d1dcea1 a.118.6.1 (A:1-241,A:351-443) Rab geranylgeranyltransferase alpha-subunit, N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Protein prenylyltransferase family: Protein prenylyltransferase domain: Rab geranylgeranyltransferase alpha-subunit, N-terminal domain species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.72 E-value=6.6e-08 Score=96.20 Aligned_cols=276 Identities=8% Similarity=-0.053 Sum_probs=187.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHH----------HHccCHHHHHHHHHHHHhCCCCcCHHHH
Q 036072 248 YNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAF----------AAAKERKKAVAIFELMNKYKFKAGVDTI 317 (631)
Q Consensus 248 y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~----------~~~g~~~~A~~v~~~m~~~g~~~~~~~~ 317 (631)
+..++....+.+..++|+++++...+..+-+...|+..-..+ ...|.+++|+..++...+.. +-+...|
T Consensus 32 ~~~~~~~~~~~~~~~~al~~~~~~l~~~P~~~~a~~~r~~~l~~l~~~~~~~~~~~~~~~al~~~~~~l~~~-pk~~~~~ 110 (334)
T d1dcea1 32 TQAVFQKRQAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN-PKSYGTW 110 (334)
T ss_dssp HHHHHHHHHTTCCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHhcccccHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHHHHHHHHhC-CCcHHHH
Confidence 334444444445567888888888887776666664433332 23445788888998888765 5567777
Q ss_pred HHHHHHHHcCC--ChHHHHHHHHHHhcccCCChhhHHH-HHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 036072 318 NCLLENLGRSK--LPKEAQLLFDKLKHRFTPNLTTYTV-LLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLL 394 (631)
Q Consensus 318 ~~Ll~~~~~~g--~~~~A~~l~~~m~~~~~p~~~~y~~-Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~ 394 (631)
..+..++...+ +.++|...++.+.+..+.+...+.. ....+...+.+++|+..++.+.+... -+...|+.+...+.
T Consensus 111 ~~~~~~~~~~~~~~~~~a~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~Al~~~~~~i~~~p-~~~~a~~~l~~~~~ 189 (334)
T d1dcea1 111 HHRCWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNF-SNYSSWHYRSCLLP 189 (334)
T ss_dssp HHHHHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTC-CCHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccccHHHHHHHHHHHHhhCchhhhhhhhHHHHHHHhccccHHHHHHHHHHHHcCC-CCHHHHHHHHHHHH
Confidence 77766666654 5788999999887766666766654 44667778999999999998887643 36778888888888
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 036072 395 KIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNAL 474 (631)
Q Consensus 395 ~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~l 474 (631)
+.|++++|...+....+. .|+. ..+...+...+..+++...+........ ++...+..+
T Consensus 190 ~~~~~~~A~~~~~~~~~~--~~~~------------------~~~~~~~~~l~~~~~a~~~~~~~l~~~~-~~~~~~~~l 248 (334)
T d1dcea1 190 QLHPQPDSGPQGRLPENV--LLKE------------------LELVQNAFFTDPNDQSAWFYHRWLLGRA-EPLFRCELS 248 (334)
T ss_dssp HHSCCCCSSSCCSSCHHH--HHHH------------------HHHHHHHHHHCSSCSHHHHHHHHHHSCC-CCSSSCCCC
T ss_pred HhcCHHHHHHHHHHhHHh--HHHH------------------HHHHHHHHHhcchhHHHHHHHHHHHhCc-chhhHHHHH
Confidence 988888776555433221 1110 0112223334556667777777665532 344456666
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHH
Q 036072 475 IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCP-DDNSYTVLIGGLI 549 (631)
Q Consensus 475 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~ 549 (631)
...+...++.++|...+.+..+.. +-+..++..+..+|...|++++|.+.++..++. .| +..-|..|...+.
T Consensus 249 ~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~~~eA~~~~~~ai~l--dP~~~~y~~~L~~~~~ 321 (334)
T d1dcea1 249 VEKSTVLQSELESCKELQELEPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKAV--DPMRAAYLDDLRSKFL 321 (334)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTC-HHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHH--CGGGHHHHHHHHHHHH
T ss_pred HHHHHHHhhHHHHHHHHHHHHhhC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH--CcccHHHHHHHHHHHh
Confidence 777778889999999998887653 335677888889999999999999999999886 34 3455666655554
|
| >d1xnfa_ a.118.8.1 (A:) Lipoprotein NlpI {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Lipoprotein NlpI species: Escherichia coli [TaxId: 562]
Probab=98.70 E-value=7e-07 Score=84.58 Aligned_cols=195 Identities=10% Similarity=-0.072 Sum_probs=86.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHh
Q 036072 350 TYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFC 429 (631)
Q Consensus 350 ~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~ 429 (631)
+|..+...|.+.|++++|...|++..+.. +-+..+|+.+..+|.+.|++++|++.|+++.+. .|+
T Consensus 39 ~~~~~G~~y~~~g~~~~A~~~~~~al~l~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~--~p~------------ 103 (259)
T d1xnfa_ 39 LLYERGVLYDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLEL--DPT------------ 103 (259)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTT------------
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHhhccC-CCCHHHHhhhchHHHHHHHHHHhhhhhhHHHHH--Hhh------------
Confidence 44445555555555555555555555432 123445555555555555555555555555543 222
Q ss_pred hcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHH
Q 036072 430 KQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMI 509 (631)
Q Consensus 430 ~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~L 509 (631)
+..++..+...|...|++++|.+.|+...+... .+......+..++.+.+..+.+..+..........+. .++ +
T Consensus 104 --~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~ 177 (259)
T d1xnfa_ 104 --YNYAHLNRGIALYYGGRDKLAQDDLLAFYQDDP-NDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKSDKEQW--GWN-I 177 (259)
T ss_dssp --CTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHSCCCST--HHH-H
T ss_pred --hhhhHHHHHHHHHHHhhHHHHHHHHHHHHhhcc-ccHHHHHHHHHHHHHhhhHHHHHHHHHHhhccchhhh--hhh-H
Confidence 223344444555555556666555555554422 1233332333333344444444444444433221111 111 1
Q ss_pred HHHHHHc----CCHHHHHHHHHHHHHcCCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 036072 510 MKSYFQT----GNYEMGRKVWDEMIRRGCCP-DDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567 (631)
Q Consensus 510 i~~~~~~----g~~~~A~~~~~~m~~~g~~p-~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~ 567 (631)
+..+... +..+.+...+...... .| ...+|..+...|...|++++|.+.|++.+..
T Consensus 178 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 238 (259)
T d1xnfa_ 178 VEFYLGNISEQTLMERLKADATDNTSL--AEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN 238 (259)
T ss_dssp HHHHTTSSCHHHHHHHHHHHCCSHHHH--HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhc--CcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc
Confidence 1111111 1111111111111110 01 1234555666677777777777777777654
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.38 E-value=6.1e-06 Score=79.80 Aligned_cols=166 Identities=9% Similarity=-0.023 Sum_probs=96.4
Q ss_pred HHHHHHHHHhccCCHHHHHHHHHHHHHc----CC-CCCHHHHHHHHHHHH-hcCChhHHHHHHHHHHH----CCCCC-CH
Q 036072 435 VYTCLITGFGNRRRMDIVYDLLKEMEER----GC-PPDGLTYNALIKLMK-IQKMPDEAVRIYKEMVR----SGFKP-TI 503 (631)
Q Consensus 435 ~~~~li~~~~~~g~~~~A~~l~~~m~~~----g~-~p~~~t~~~li~~~~-~~g~~~~A~~l~~~m~~----~g~~p-~~ 503 (631)
+|..+..+|.+.|++++|.+.++...+. |- .....++..+...|. ..|++++|++.|++..+ .+..+ ..
T Consensus 79 ~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~ 158 (290)
T d1qqea_ 79 TYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSN 158 (290)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHHHHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhh
Confidence 3444455555566666666665544321 10 001234445555554 35888888888887654 22111 13
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCC-----H-HHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCC-CC---H
Q 036072 504 HTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPD-----D-NSYTVLIGGLISQDRSGEAYKYLEEMLEKGMK-AP---V 573 (631)
Q Consensus 504 ~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~-----~-~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~-p~---~ 573 (631)
.++..+...|...|++++|...|+++........ . ..+..++..+...|+++.|...++++.+.... ++ .
T Consensus 159 ~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~ 238 (290)
T d1qqea_ 159 KCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRES 238 (290)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------H
T ss_pred hHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHH
Confidence 4577788888899999999999988876432211 1 22334455566789999999888888764311 11 2
Q ss_pred HHHHHHHHHHHh--cCCHHHHHHHHHHHH
Q 036072 574 LDYNKFAADLSR--AGRSYVLDELAQKMR 600 (631)
Q Consensus 574 ~~~~~li~~~~~--~g~~~~A~~l~~~m~ 600 (631)
.....++.++.. .+.+++|...++++.
T Consensus 239 ~~l~~l~~a~~~~d~e~~~eai~~y~~~~ 267 (290)
T d1qqea_ 239 NFLKSLIDAVNEGDSEQLSEHCKEFDNFM 267 (290)
T ss_dssp HHHHHHHHHHHTTCTTTHHHHHHHHTTSS
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHh
Confidence 234556666654 234677777766544
|
| >d1qqea_ a.118.8.1 (A:) Vesicular transport protein sec17 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Vesicular transport protein sec17 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=98.22 E-value=2.5e-05 Score=75.28 Aligned_cols=204 Identities=9% Similarity=-0.059 Sum_probs=128.1
Q ss_pred HHHHHHHHHHccCHHHHHHHHHHHHhC----CCC-cCHHHHHHHHHHHHcCCChHHHHHHHHHHhcc---c---CCChhh
Q 036072 282 FKIAMNAFAAAKERKKAVAIFELMNKY----KFK-AGVDTINCLLENLGRSKLPKEAQLLFDKLKHR---F---TPNLTT 350 (631)
Q Consensus 282 ~~~li~~~~~~g~~~~A~~v~~~m~~~----g~~-~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~---~---~p~~~~ 350 (631)
|......|...+++++|.+.|....+. +-. .-..+|..+..+|.+.|++++|...+++..+- . .....+
T Consensus 40 y~~aa~~y~~~~~~~~A~~~y~kA~~~~~~~~~~~~~a~~~~~~g~~y~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 119 (290)
T d1qqea_ 40 CVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANF 119 (290)
T ss_dssp HHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHhhHHhhhcccchhHHHH
Confidence 444566788888899998888887653 111 12357888888999999999999998876431 1 112445
Q ss_pred HHHHHHHHHh-cCCHHHHHHHHHHHHHc----CCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHH
Q 036072 351 YTVLLGGWCR-VKNLMEAGRVWNEMIDK----GFKP-DVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIM 424 (631)
Q Consensus 351 y~~Li~~~~~-~g~~~~A~~l~~~m~~~----g~~p-~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~l 424 (631)
+..+...|.. .|++++|.+.|++..+. +..+ -..+|..+...+...|++++|++.|+++...........+..
T Consensus 120 ~~~l~~~~~~~~~~~~~A~~~~~~A~~l~~~~~~~~~~~~~~~~la~~~~~~g~y~~A~~~~~~~~~~~~~~~~~~~~~- 198 (290)
T d1qqea_ 120 KFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL- 198 (290)
T ss_dssp HHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH-
T ss_pred HHHHHHhHhhHHHHHHHHHHHHHHHHHHHHhcCchhhhhhHHHHHHHHHHHcChHHHHHHHHHHHHHhCccchhhhhhH-
Confidence 6667767754 69999999999887642 2111 134578889999999999999999999877532221111110
Q ss_pred HHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCC-CC---HHHHHHHHHHHHh--cCChhHHHHHHHHH
Q 036072 425 IWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCP-PD---GLTYNALIKLMKI--QKMPDEAVRIYKEM 494 (631)
Q Consensus 425 i~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~-p~---~~t~~~li~~~~~--~g~~~~A~~l~~~m 494 (631)
...+...+..+...|+++.|...++...+.... ++ ......++.++.. .+.+++|+..|+.+
T Consensus 199 --------~~~~~~~~~~~l~~~d~~~A~~~~~~~~~~~~~~~~sre~~~l~~l~~a~~~~d~e~~~eai~~y~~~ 266 (290)
T d1qqea_ 199 --------KDYFLKKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (290)
T ss_dssp --------HHHHHHHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred --------HHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCccchHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 112233344556678888888888877654211 11 1234455555543 23355666665543
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.12 E-value=4.6e-05 Score=62.32 Aligned_cols=99 Identities=10% Similarity=-0.111 Sum_probs=59.0
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChH
Q 036072 252 MSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPK 331 (631)
Q Consensus 252 i~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~ 331 (631)
-..+.+.|++++|+..|++..+..+-+...|..+..++...|++++|+..++...+.. +.+...|..+..++...|+++
T Consensus 10 g~~~~~~g~~~eAi~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~g~~~~~~~~~~ 88 (117)
T d1elwa_ 10 GNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAALEFLNRFE 88 (117)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCcchhhhhcccccccccccccccchhhhhHHHhc-cchhhHHHHHHHHHHHccCHH
Confidence 3445556666666666666666665566666666666666666666666666666554 445556666666666666666
Q ss_pred HHHHHHHHHhcccCCChhhH
Q 036072 332 EAQLLFDKLKHRFTPNLTTY 351 (631)
Q Consensus 332 ~A~~l~~~m~~~~~p~~~~y 351 (631)
+|...|+...+..+-+...+
T Consensus 89 ~A~~~~~~a~~~~p~~~~~~ 108 (117)
T d1elwa_ 89 EAKRTYEEGLKHEANNPQLK 108 (117)
T ss_dssp HHHHHHHHHHTTCTTCHHHH
T ss_pred HHHHHHHHHHHhCCCCHHHH
Confidence 66666666555433343333
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.10 E-value=7e-05 Score=67.23 Aligned_cols=124 Identities=13% Similarity=0.013 Sum_probs=90.7
Q ss_pred HHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCH
Q 036072 440 ITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNY 519 (631)
Q Consensus 440 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~ 519 (631)
...+...|+++.|++.|.++ .+|+..+|..+..+|...|++++|++.|++.++.. +-+...|..+..+|.+.|++
T Consensus 12 g~~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ld-p~~~~a~~~~g~~~~~~g~~ 86 (192)
T d1hh8a_ 12 GVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEKY 86 (192)
T ss_dssp HHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHh-hhhhhhHHHHHHHHHhhccH
Confidence 34456678888888888764 34677778888888888888888888888888764 34577888888888888888
Q ss_pred HHHHHHHHHHHHcCC--------------CCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC
Q 036072 520 EMGRKVWDEMIRRGC--------------CPD-DNSYTVLIGGLISQDRSGEAYKYLEEMLEKG 568 (631)
Q Consensus 520 ~~A~~~~~~m~~~g~--------------~p~-~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g 568 (631)
++|.+.|++.+.... ..+ ..++..+..++.+.|++++|.+.++...+..
T Consensus 87 ~~A~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~ 150 (192)
T d1hh8a_ 87 DLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 150 (192)
T ss_dssp HHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 888888888765310 011 2445556667778888888888888777654
|
| >d1hh8a_ a.118.8.1 (A:) Neutrophil cytosolic factor 2 (NCF-2, p67-phox) {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Neutrophil cytosolic factor 2 (NCF-2, p67-phox) species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.09 E-value=9.4e-05 Score=66.35 Aligned_cols=124 Identities=12% Similarity=-0.084 Sum_probs=72.6
Q ss_pred HHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHH
Q 036072 288 AFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEA 367 (631)
Q Consensus 288 ~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A 367 (631)
.+...|++++|++.|+.+ .+++..+|..+..+|...|++++|...|++..+..+.+...|..+..+|.+.|++++|
T Consensus 14 ~~~~~~d~~~Al~~~~~i----~~~~~~~~~nlG~~~~~~g~~~~A~~~~~kAl~ldp~~~~a~~~~g~~~~~~g~~~~A 89 (192)
T d1hh8a_ 14 LAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRDKHLAVAYFQRGMLYYQTEKYDLA 89 (192)
T ss_dssp HHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHCCCHHHHHHHHHhc----CCCCHHHHHHHHHHHHHcCCchhHHHHHHHHHHHhhhhhhhHHHHHHHHHhhccHHHH
Confidence 344556666666655543 1345555666666666666666666666665554445556666666666666666666
Q ss_pred HHHHHHHHHcC------------CC--CC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 036072 368 GRVWNEMIDKG------------FK--PD-VVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415 (631)
Q Consensus 368 ~~l~~~m~~~g------------~~--p~-~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~ 415 (631)
.+.|++..... .. .+ ..++..+..++.+.|++++|.+.+....+....
T Consensus 90 ~~~~~kAl~~~~~n~~~~~~~~~~~~~~~~~e~~~n~a~~~~~~~~~~~A~~~l~~A~~~~~~ 152 (192)
T d1hh8a_ 90 IKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 152 (192)
T ss_dssp HHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHhCccCchHHHHHhhhhcccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 66666654320 00 01 234455666777788888888877777654333
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.07 E-value=5.4e-05 Score=65.61 Aligned_cols=89 Identities=8% Similarity=-0.079 Sum_probs=44.9
Q ss_pred HHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHH
Q 036072 253 SILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKE 332 (631)
Q Consensus 253 ~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~ 332 (631)
..|.+.|++++|+..|++..+.++.+...|..+..+|...|++++|++.|+..++.. +-+..+|..+..+|...|++++
T Consensus 18 n~~~~~~~y~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~-p~~~~a~~~~g~~~~~~g~~~e 96 (159)
T d1a17a_ 18 NDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 96 (159)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHcCCHHHHHHHhhhccccchhhhhhhhhhHHHHHhccccchHHHHHHHHHHHc-ccchHHHHHHHHHHHHcCCHHH
Confidence 344455555555555555555544445555555555555555555555555554443 3344445445555555555555
Q ss_pred HHHHHHHHhc
Q 036072 333 AQLLFDKLKH 342 (631)
Q Consensus 333 A~~l~~~m~~ 342 (631)
|...+++...
T Consensus 97 A~~~~~~a~~ 106 (159)
T d1a17a_ 97 ALRDYETVVK 106 (159)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 5555554443
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=98.04 E-value=1.6e-05 Score=71.66 Aligned_cols=98 Identities=9% Similarity=-0.025 Sum_probs=70.5
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 036072 243 HNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLE 322 (631)
Q Consensus 243 p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~ 322 (631)
|+...+...-..|.+.|++++|+..|++..+..+.+..+|..+..+|.+.|++++|+..|+..++.. +-+..+|..+..
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~-p~~~~a~~~lg~ 80 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQ 80 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhC-CCcHHHHHHHHH
Confidence 5556666666777777777777777777777777677777777777777777777777777777653 345666777777
Q ss_pred HHHcCCChHHHHHHHHHHh
Q 036072 323 NLGRSKLPKEAQLLFDKLK 341 (631)
Q Consensus 323 ~~~~~g~~~~A~~l~~~m~ 341 (631)
+|...|++++|...|++..
T Consensus 81 ~~~~l~~~~~A~~~~~~al 99 (201)
T d2c2la1 81 CQLEMESYDEAIANLQRAY 99 (201)
T ss_dssp HHHHTTCHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHH
Confidence 7777777777777777654
|
| >d1elwa_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.03 E-value=8.1e-05 Score=60.77 Aligned_cols=89 Identities=18% Similarity=0.125 Sum_probs=50.3
Q ss_pred HHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHH
Q 036072 477 LMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGE 556 (631)
Q Consensus 477 ~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~ 556 (631)
.+.+.|++++|+.+|++.++.. +-+...|..+..+|...|++++|+..++..++.+.. +...|..+..++...|++++
T Consensus 12 ~~~~~g~~~eAi~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~g~~~~~~~~~~~ 89 (117)
T d1elwa_ 12 KALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPD-WGKGYSRKAAALEFLNRFEE 89 (117)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CcchhhhhcccccccccccccccchhhhhHHHhccc-hhhHHHHHHHHHHHccCHHH
Confidence 3455556666666666555542 334555555556666666666666666665554332 55555555666666666666
Q ss_pred HHHHHHHHHHC
Q 036072 557 AYKYLEEMLEK 567 (631)
Q Consensus 557 A~~ll~~m~~~ 567 (631)
|+..|++..+.
T Consensus 90 A~~~~~~a~~~ 100 (117)
T d1elwa_ 90 AKRTYEEGLKH 100 (117)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHHHh
Confidence 66666665553
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=98.02 E-value=0.0043 Score=57.76 Aligned_cols=16 Identities=6% Similarity=0.115 Sum_probs=7.6
Q ss_pred CHHHHHHHHHHHHHcC
Q 036072 518 NYEMGRKVWDEMIRRG 533 (631)
Q Consensus 518 ~~~~A~~~~~~m~~~g 533 (631)
+.++|...|+...+.|
T Consensus 197 d~~~A~~~~~~aa~~g 212 (265)
T d1ouva_ 197 NFKEALARYSKACELE 212 (265)
T ss_dssp CHHHHHHHHHHHHHTT
T ss_pred chhhhhhhHhhhhccc
Confidence 4444555554444443
|
| >d1a17a_ a.118.8.1 (A:) Protein phosphatase 5 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Protein phosphatase 5 species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.00 E-value=0.00012 Score=63.18 Aligned_cols=92 Identities=12% Similarity=0.055 Sum_probs=69.2
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCH
Q 036072 475 IKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRS 554 (631)
Q Consensus 475 i~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~ 554 (631)
...|.+.|++++|+..|++.++.. +-+...|..+..+|...|++++|...|++.++.... +...|..+..+|...|++
T Consensus 17 gn~~~~~~~y~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~kal~~~p~-~~~a~~~~g~~~~~~g~~ 94 (159)
T d1a17a_ 17 ANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKK-YIKGYYRRAASNMALGKF 94 (159)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHhhhccccc-hhhhhhhhhhHHHHHhccccchHHHHHHHHHHHccc-chHHHHHHHHHHHHcCCH
Confidence 345667888888888888877754 346777777888888888888888888888776433 567788788888888888
Q ss_pred HHHHHHHHHHHHCC
Q 036072 555 GEAYKYLEEMLEKG 568 (631)
Q Consensus 555 ~~A~~ll~~m~~~g 568 (631)
++|...+++.....
T Consensus 95 ~eA~~~~~~a~~~~ 108 (159)
T d1a17a_ 95 RAALRDYETVVKVK 108 (159)
T ss_dssp HHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHcC
Confidence 88888888887753
|
| >d1ouva_ a.118.18.1 (A:) Cysteine rich protein C (HcpC) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein C (HcpC) species: Helicobacter pylori [TaxId: 210]
Probab=97.97 E-value=0.0069 Score=56.26 Aligned_cols=235 Identities=10% Similarity=-0.024 Sum_probs=146.4
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCcHHHHHH
Q 036072 348 LTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLK----IGKRSDAIKLFEVMKAKGPSPNVRSYTI 423 (631)
Q Consensus 348 ~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~----~g~~~~A~~ll~~m~~~g~~p~~~~~~~ 423 (631)
+..+..|...+.+.+++++|++.|++..+.| +...+..|-..|.. ..+...|...+....+.+.. . ....
T Consensus 2 p~~~~~lG~~~~~~~d~~~A~~~~~kAa~~g---~~~A~~~Lg~~y~~G~~~~~d~~~a~~~~~~a~~~~~~-~--a~~~ 75 (265)
T d1ouva_ 2 PKELVGLGAKSYKEKDFTQAKKYFEKACDLK---ENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLNYS-N--GCHL 75 (265)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH-H--HHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCcchhHHHHHHhhccccccccc-c--hhhc
Confidence 3445555566666677777777777766654 44444445555544 44566666666665554421 1 1110
Q ss_pred HHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH----hcCChhHHHHHHHHHHHCCC
Q 036072 424 MIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMK----IQKMPDEAVRIYKEMVRSGF 499 (631)
Q Consensus 424 li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~----~~g~~~~A~~l~~~m~~~g~ 499 (631)
+- ...........+.+.|...++...+.|.. .....+...+. .......+...+......+
T Consensus 76 l~-----------~~~~~~~~~~~~~~~a~~~~~~a~~~g~~---~a~~~l~~~~~~~~~~~~~~~~a~~~~~~~~~~~- 140 (265)
T d1ouva_ 76 LG-----------NLYYSGQGVSQNTNKALQYYSKACDLKYA---EGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN- 140 (265)
T ss_dssp HH-----------HHHHHTSSSCCCHHHHHHHHHHHHHTTCH---HHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT-
T ss_pred cc-----------cccccccccchhhHHHHHHHhhhhhhhhh---hHHHhhcccccCCCcccchhHHHHHHhhhhhccc-
Confidence 00 00111122345778888888877776532 22222322332 2345667777777776643
Q ss_pred CCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCCCCC
Q 036072 500 KPTIHTYNMIMKSYFQ----TGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLIS----QDRSGEAYKYLEEMLEKGMKA 571 (631)
Q Consensus 500 ~p~~~t~~~Li~~~~~----~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~ll~~m~~~g~~p 571 (631)
+...+..|...|.. ..+...+...++...+.| +......+...|.. ..+.++|..+|++..+.|
T Consensus 141 --~~~~~~~L~~~~~~~~~~~~~~~~~~~~~~~a~~~g---~~~A~~~lg~~y~~g~~~~~d~~~A~~~~~~aa~~g--- 212 (265)
T d1ouva_ 141 --DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE--- 212 (265)
T ss_dssp --CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---
T ss_pred --ccchhhhhhhhhccCCCcccccccchhhhhcccccc---ccccccchhhhcccCcccccchhhhhhhHhhhhccc---
Confidence 56677778878776 456778888888887765 56666666666665 568999999999999987
Q ss_pred CHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCCchHHHH
Q 036072 572 PVLDYNKFAADLSR----AGRSYVLDELAQKMRFSGKFEVSNVL 611 (631)
Q Consensus 572 ~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~~~~~~l 611 (631)
+...+..|...|.+ ..+.++|.+++++.-..|.....+.+
T Consensus 213 ~~~a~~~LG~~y~~G~g~~~n~~~A~~~~~kAa~~g~~~A~~~l 256 (265)
T d1ouva_ 213 NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGACDIL 256 (265)
T ss_dssp CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHHHHHH
T ss_pred CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHCcCHHHHHHH
Confidence 45667777777765 34789999999999988875544433
|
| >d2c2la1 a.118.8.1 (A:24-224) STIP1 homology and U box-containing protein 1, STUB1 {Mouse (Mus musculus) [TaxId: 10090]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: STIP1 homology and U box-containing protein 1, STUB1 species: Mouse (Mus musculus) [TaxId: 10090]
Probab=97.93 E-value=7.6e-05 Score=66.94 Aligned_cols=100 Identities=11% Similarity=0.024 Sum_probs=86.1
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHH
Q 036072 466 PDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLI 545 (631)
Q Consensus 466 p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li 545 (631)
|+...+......|.+.|++++|+..|.+.++.. +-+...|+.+..+|.+.|++++|+..|++.++.... +..+|..+.
T Consensus 2 ~~a~~l~~~Gn~~~~~g~~~~Ai~~~~kal~~~-p~~~~~~~~lg~~y~~~~~~~~Ai~~~~~al~l~p~-~~~a~~~lg 79 (201)
T d2c2la1 2 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQ-SVKAHFFLG 79 (201)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTT-CHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHhhhhhhhhhhHHHHHHHHhCCC-cHHHHHHHH
Confidence 667777778888999999999999999988864 457888999999999999999999999999876433 678899999
Q ss_pred HHHHHcCCHHHHHHHHHHHHHC
Q 036072 546 GGLISQDRSGEAYKYLEEMLEK 567 (631)
Q Consensus 546 ~~~~~~g~~~~A~~ll~~m~~~ 567 (631)
.+|...|++++|+..|+++.+.
T Consensus 80 ~~~~~l~~~~~A~~~~~~al~l 101 (201)
T d2c2la1 80 QCQLEMESYDEAIANLQRAYSL 101 (201)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHh
Confidence 9999999999999999988753
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.85 E-value=0.011 Score=56.96 Aligned_cols=292 Identities=9% Similarity=-0.008 Sum_probs=157.6
Q ss_pred CCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHH
Q 036072 243 HNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLE 322 (631)
Q Consensus 243 p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~ 322 (631)
||..--..+.+.|-+.|.++.|..+|..+.. |..++..+.+.++++.|.+++... -+..+|..+..
T Consensus 12 ~n~~d~~~i~~~c~~~~lye~A~~lY~~~~d--------~~rl~~~~v~l~~~~~avd~~~k~------~~~~~~k~~~~ 77 (336)
T d1b89a_ 12 PNNAHIQQVGDRCYDEKMYDAAKLLYNNVSN--------FGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCF 77 (336)
T ss_dssp C----------------CTTTHHHHHHHTTC--------HHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHH
T ss_pred CCcCCHHHHHHHHHHCCCHHHHHHHHHhCCC--------HHHHHHHHHhhccHHHHHHHHHHc------CCHHHHHHHHH
Confidence 4455556677778888999999998876643 888888888999999888877644 35678888888
Q ss_pred HHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHH
Q 036072 323 NLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDA 402 (631)
Q Consensus 323 ~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A 402 (631)
++.+......|..+ ......+......++..|-..|.+++...+++..... -..+...++-++..|++.+ .++
T Consensus 78 ~l~~~~e~~la~i~----~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~-~~~~~~~~~~L~~lyak~~-~~k- 150 (336)
T d1b89a_ 78 ACVDGKEFRLAQMC----GLHIVVHADELEELINYYQDRGYFEELITMLEAALGL-ERAHMGMFTELAILYSKFK-PQK- 150 (336)
T ss_dssp HHHHTTCHHHHHHT----TTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTS-TTCCHHHHHHHHHHHHTTC-HHH-
T ss_pred HHHhCcHHHHHHHH----HHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcC-CccchHHHHHHHHHHHHhC-hHH-
Confidence 88877666544221 1112234555677888888999999998888877643 3456777888888888764 333
Q ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcC
Q 036072 403 IKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQK 482 (631)
Q Consensus 403 ~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g 482 (631)
+++.+...+..-+.. .++..|-+ ...|.-++-.|.+.|+++.|..++-. . .++..-....+..+.+..
T Consensus 151 --l~e~l~~~s~~y~~~---k~~~~c~~--~~l~~elv~Ly~~~~~~~~A~~~~i~---~--~~~~~~~~~f~e~~~k~~ 218 (336)
T d1b89a_ 151 --MREHLELFWSRVNIP---KVLRAAEQ--AHLWAELVFLYDKYEEYDNAIITMMN---H--PTDAWKEGQFKDIITKVA 218 (336)
T ss_dssp --HHHHHHHHSTTSCHH---HHHHHHHT--TTCHHHHHHHHHHTTCHHHHHHHHHH---S--TTTTCCHHHHHHHHHHCS
T ss_pred --HHHHHHhccccCCHH---HHHHHHHH--cCChHHHHHHHHhcCCHHHHHHHHHH---c--chhhhhHHHHHHHHHccC
Confidence 333333321121211 12222221 22344555556666666655544322 1 122222333444555555
Q ss_pred ChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Q 036072 483 MPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLE 562 (631)
Q Consensus 483 ~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~ 562 (631)
+.+...++.....+. .|+ ..+.|+......-+..+. +..+.+.++..-...+++
T Consensus 219 N~e~~~~~i~~yL~~--~p~--~i~~lL~~v~~~~d~~r~----------------------V~~~~k~~~l~li~p~Le 272 (336)
T d1b89a_ 219 NVELYYRAIQFYLEF--KPL--LLNDLLMVLSPRLDHTRA----------------------VNYFSKVKQLPLVKPYLR 272 (336)
T ss_dssp STHHHHHHHHHHHHH--CGG--GHHHHHHHHGGGCCHHHH----------------------HHHHHHTTCTTTTHHHHH
T ss_pred ChHHHHHHHHHHHHc--CHH--HHHHHHHHhccCCCHHHH----------------------HHHHHhcCCcHHHHHHHH
Confidence 555555544444432 222 223444433333333333 333445555666666666
Q ss_pred HHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHH
Q 036072 563 EMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELA 596 (631)
Q Consensus 563 ~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~ 596 (631)
...+.| +..+.+++...|...++++.-.+.+
T Consensus 273 ~v~~~n---~~~vn~al~~lyie~~d~~~l~~~i 303 (336)
T d1b89a_ 273 SVQNHN---NKSVNESLNNLFITEEDYQALRTSI 303 (336)
T ss_dssp HHHTTC---CHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHcC---hHHHHHHHHHHHhCcchhHHHHHHH
Confidence 655544 3457778888888888765544443
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.75 E-value=0.00015 Score=58.65 Aligned_cols=88 Identities=8% Similarity=-0.006 Sum_probs=49.1
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCH
Q 036072 510 MKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRS 589 (631)
Q Consensus 510 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~ 589 (631)
...+.+.|++++|...|++.++.... +...|..+..++.+.|++++|+..+++.++.. +-+...|..+..+|...|++
T Consensus 23 g~~~~~~g~~~~A~~~~~~al~~~p~-~~~a~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~la~~y~~~g~~ 100 (112)
T d1hxia_ 23 GLSMLKLANLAEAALAFEAVCQKEPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHTNEHNA 100 (112)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHhhhcccccc-cchhhhhhhhhhhhhhhHHHhhcccccccccc-cccccchHHHHHHHHHCCCH
Confidence 34455556666666666665554322 45555555555666666666666666655543 23345555566666666666
Q ss_pred HHHHHHHHHH
Q 036072 590 YVLDELAQKM 599 (631)
Q Consensus 590 ~~A~~l~~~m 599 (631)
++|.+.+++.
T Consensus 101 ~~A~~~l~~~ 110 (112)
T d1hxia_ 101 NAALASLRAW 110 (112)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666655543
|
| >d1hxia_ a.118.8.1 (A:) Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) {Trypanosoma brucei [TaxId: 5691]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Peroxin pex5 (peroxisomal targeting signal 1 (PTS1) receptor) species: Trypanosoma brucei [TaxId: 5691]
Probab=97.69 E-value=0.00012 Score=59.11 Aligned_cols=16 Identities=19% Similarity=-0.078 Sum_probs=5.7
Q ss_pred HHHHHHHhcCCHHHHH
Q 036072 353 VLLGGWCRVKNLMEAG 368 (631)
Q Consensus 353 ~Li~~~~~~g~~~~A~ 368 (631)
.+...|...|++++|.
T Consensus 89 ~la~~y~~~g~~~~A~ 104 (112)
T d1hxia_ 89 ALAVSHTNEHNANAAL 104 (112)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHH
Confidence 3333333333333333
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.63 E-value=0.00014 Score=59.88 Aligned_cols=93 Identities=14% Similarity=0.123 Sum_probs=48.9
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHcCCCCC-HHHHHHHHHHH
Q 036072 473 ALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGN---YEMGRKVWDEMIRRGCCPD-DNSYTVLIGGL 548 (631)
Q Consensus 473 ~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~---~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~ 548 (631)
.+++.+...+++++|.+.|++..+.+ +.+..++..+..++.+.++ +++|+.+++++...+..|+ ..+|..+..+|
T Consensus 4 ~l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y 82 (122)
T d1nzna_ 4 AVLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGN 82 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHH
Confidence 34455555556666666666655543 3345555555555554332 3345556665554433222 12445555556
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 036072 549 ISQDRSGEAYKYLEEMLE 566 (631)
Q Consensus 549 ~~~g~~~~A~~ll~~m~~ 566 (631)
.+.|++++|.+.|+++++
T Consensus 83 ~~~g~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 83 YRLKEYEKALKYVRGLLQ 100 (122)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhhHHHHHHHHHHHH
Confidence 666666666666666655
|
| >d1b89a_ a.118.1.3 (A:) Clathrin heavy chain proximal leg segment {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: ARM repeat family: Clathrin heavy chain proximal leg segment domain: Clathrin heavy chain proximal leg segment species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.61 E-value=0.034 Score=53.45 Aligned_cols=284 Identities=10% Similarity=0.021 Sum_probs=161.2
Q ss_pred HHHHHHHHhhccCc--hhHHHHHHHhhcCCCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHH
Q 036072 212 NLVVDVLERFRHAR--RPAFRFFCWAGDKPGFAHNSRTYNSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAF 289 (631)
Q Consensus 212 ~~~~~vl~~~~~~~--~~A~~~f~~~~~~~g~~p~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~ 289 (631)
..+..+...|-..+ +.|..++..+ .-|..++..+.+.++++.|.+++.+. -+..+|..+...+
T Consensus 15 ~d~~~i~~~c~~~~lye~A~~lY~~~----------~d~~rl~~~~v~l~~~~~avd~~~k~-----~~~~~~k~~~~~l 79 (336)
T d1b89a_ 15 AHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKA-----NSTRTWKEVCFAC 79 (336)
T ss_dssp --------------CTTTHHHHHHHT----------TCHHHHHHHHHTTTCHHHHHHHHHHH-----TCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHCCCHHHHHHHHHhC----------CCHHHHHHHHHhhccHHHHHHHHHHc-----CCHHHHHHHHHHH
Confidence 33444444443332 4588888754 34667888899999999998887654 3677888889988
Q ss_pred HHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHH
Q 036072 290 AAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGR 369 (631)
Q Consensus 290 ~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~ 369 (631)
........| .+.......+......++..|-..|.+++...+++.....-..+...++-++..|++.+. ++
T Consensus 80 ~~~~e~~la-----~i~~~~~~~~~d~l~~~v~~ye~~~~~e~Li~~Le~~~~~~~~~~~~~~~L~~lyak~~~-~k--- 150 (336)
T d1b89a_ 80 VDGKEFRLA-----QMCGLHIVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKP-QK--- 150 (336)
T ss_dssp HHTTCHHHH-----HHTTTTTTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSTTCCHHHHHHHHHHHHTTCH-HH---
T ss_pred HhCcHHHHH-----HHHHHHhhcCHHHHHHHHHHHHHcCChHHHHHHHHHHHcCCccchHHHHHHHHHHHHhCh-HH---
Confidence 888776553 223334455677777899999999999999999998755445677889999999998753 33
Q ss_pred HHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHhhcCHHHHHHHHHHHhccCCH
Q 036072 370 VWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPSPNVRSYTIMIWKFCKQNAAVYTCLITGFGNRRRM 449 (631)
Q Consensus 370 l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~~~~~~~~li~~~~~~g~~ 449 (631)
+.+.+....-.-| ..-++..|-+.+-+.++.-++..+.. .+.. ...+|.... +..-....+..+.+..+
T Consensus 151 l~e~l~~~s~~y~---~~k~~~~c~~~~l~~elv~Ly~~~~~----~~~A-~~~~i~~~~--~~~~~~~f~e~~~k~~N- 219 (336)
T d1b89a_ 151 MREHLELFWSRVN---IPKVLRAAEQAHLWAELVFLYDKYEE----YDNA-IITMMNHPT--DAWKEGQFKDIITKVAN- 219 (336)
T ss_dssp HHHHHHHHSTTSC---HHHHHHHHHTTTCHHHHHHHHHHTTC----HHHH-HHHHHHSTT--TTCCHHHHHHHHHHCSS-
T ss_pred HHHHHHhccccCC---HHHHHHHHHHcCChHHHHHHHHhcCC----HHHH-HHHHHHcch--hhhhHHHHHHHHHccCC-
Confidence 3333333211222 23456666666667776666665532 1110 111111000 00001112222333333
Q ss_pred HHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Q 036072 450 DIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEM 529 (631)
Q Consensus 450 ~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m 529 (631)
+..|-.++..|... +++-...++..+... .|. ..++....+.+++.....+++..
T Consensus 220 ------------------~e~~~~~i~~yL~~-~p~~i~~lL~~v~~~---~d~---~r~V~~~~k~~~l~li~p~Le~v 274 (336)
T d1b89a_ 220 ------------------VELYYRAIQFYLEF-KPLLLNDLLMVLSPR---LDH---TRAVNYFSKVKQLPLVKPYLRSV 274 (336)
T ss_dssp ------------------THHHHHHHHHHHHH-CGGGHHHHHHHHGGG---CCH---HHHHHHHHHTTCTTTTHHHHHHH
T ss_pred ------------------hHHHHHHHHHHHHc-CHHHHHHHHHHhccC---CCH---HHHHHHHHhcCCcHHHHHHHHHH
Confidence 33444444444432 233334444333321 121 34555566777777777888776
Q ss_pred HHcCCCCCHHHHHHHHHHHHHcCCHHHHH
Q 036072 530 IRRGCCPDDNSYTVLIGGLISQDRSGEAY 558 (631)
Q Consensus 530 ~~~g~~p~~~t~~~li~~~~~~g~~~~A~ 558 (631)
.+.+ +....+++...|...++++.-.
T Consensus 275 ~~~n---~~~vn~al~~lyie~~d~~~l~ 300 (336)
T d1b89a_ 275 QNHN---NKSVNESLNNLFITEEDYQALR 300 (336)
T ss_dssp HTTC---CHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcC---hHHHHHHHHHHHhCcchhHHHH
Confidence 6655 4568888888899888865533
|
| >d1nzna_ a.118.8.1 (A:) Mitochondria fission protein Fis1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.55 E-value=0.00029 Score=57.83 Aligned_cols=91 Identities=14% Similarity=0.083 Sum_probs=45.6
Q ss_pred HHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCC---hHHHHHHHHHHhcccC-CC-hhhHHHHHHHHH
Q 036072 285 AMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKL---PKEAQLLFDKLKHRFT-PN-LTTYTVLLGGWC 359 (631)
Q Consensus 285 li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~---~~~A~~l~~~m~~~~~-p~-~~~y~~Li~~~~ 359 (631)
+++.+...+++++|++.|+...+.+ +.+..++..+..++.+.++ .++|..+|+++....+ |+ ..+|..|..+|.
T Consensus 5 l~n~~~~~~~l~~Ae~~Y~~aL~~~-p~~~~~~~n~a~~L~~s~~~~d~~~Ai~~l~~~l~~~~~~~~~~~~~~Lg~~y~ 83 (122)
T d1nzna_ 5 VLNELVSVEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNY 83 (122)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHhccCCchHHHHHHHHHHHHH
Confidence 4445555555555555555555544 3445555555555554332 2345555555443211 11 224555555555
Q ss_pred hcCCHHHHHHHHHHHHH
Q 036072 360 RVKNLMEAGRVWNEMID 376 (631)
Q Consensus 360 ~~g~~~~A~~l~~~m~~ 376 (631)
+.|++++|.+.|+++.+
T Consensus 84 ~~g~~~~A~~~~~~aL~ 100 (122)
T d1nzna_ 84 RLKEYEKALKYVRGLLQ 100 (122)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HHhhhHHHHHHHHHHHH
Confidence 56666666666655555
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.54 E-value=0.0015 Score=56.75 Aligned_cols=81 Identities=5% Similarity=-0.024 Sum_probs=60.2
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036072 504 HTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADL 583 (631)
Q Consensus 504 ~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~ 583 (631)
.+|+.+..+|.+.|++++|+..++..++.... +...|..+..+|...|++++|...|++.++.. +-+......+..+.
T Consensus 63 ~~~~nla~~y~k~~~~~~A~~~~~~al~~~p~-~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~ 140 (170)
T d1p5qa1 63 ASHLNLAMCHLKLQAFSAAIESCNKALELDSN-NEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQ 140 (170)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcccccchhhhhhhcccc-chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 45677788888999999999999988886533 78888888888999999999999999988753 22444444444444
Q ss_pred Hhc
Q 036072 584 SRA 586 (631)
Q Consensus 584 ~~~ 586 (631)
.+.
T Consensus 141 ~~~ 143 (170)
T d1p5qa1 141 QRI 143 (170)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
|
| >d1p5qa1 a.118.8.1 (A:258-427) FKBP52 (FKBP4), C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP52 (FKBP4), C-terminal domain species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.50 E-value=0.0019 Score=56.06 Aligned_cols=112 Identities=7% Similarity=-0.084 Sum_probs=86.0
Q ss_pred HHHHHHHHhccCCHHHHHHHHHHHHHcCC-----CC---------CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 036072 436 YTCLITGFGNRRRMDIVYDLLKEMEERGC-----PP---------DGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKP 501 (631)
Q Consensus 436 ~~~li~~~~~~g~~~~A~~l~~~m~~~g~-----~p---------~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 501 (631)
+......+.+.|++++|...|.+..+... .. -..+|+.+..+|.+.|++++|+..++..++.. +-
T Consensus 16 l~~~G~~~~~~~~~~~Ai~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~y~k~~~~~~A~~~~~~al~~~-p~ 94 (170)
T d1p5qa1 16 VKERGTVYFKEGKYKQALLQYKKIVSWLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALELD-SN 94 (170)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TT
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHhhhccccchHHHhhhchhHHHHHHHHHHHHHhhhhcccccchhhhhhhcc-cc
Confidence 33445678888999999999998775411 10 12456777888999999999999999999874 44
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Q 036072 502 TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLI 549 (631)
Q Consensus 502 ~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~ 549 (631)
+..+|..+..+|...|++++|...|++..+.... |......+-....
T Consensus 95 ~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~P~-n~~~~~~l~~~~~ 141 (170)
T d1p5qa1 95 NEKGLSRRGEAHLAVNDFELARADFQKVLQLYPN-NKAAKTQLAVCQQ 141 (170)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSS-CHHHHHHHHHHHH
T ss_pred chhhhHHHHHHHHHhhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHH
Confidence 7889999999999999999999999999986433 5555555544433
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.41 E-value=0.0014 Score=53.97 Aligned_cols=89 Identities=9% Similarity=0.085 Sum_probs=39.0
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCC--CCCC----HHHHHHHHHHH
Q 036072 510 MKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKG--MKAP----VLDYNKFAADL 583 (631)
Q Consensus 510 i~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g--~~p~----~~~~~~li~~~ 583 (631)
...|...|++++|+..|++.++.+.. +...|..+..+|.+.|++++|+..++++++.. .... ..+|..+...+
T Consensus 11 G~~~~~~~~y~~Ai~~y~~al~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~ 89 (128)
T d1elra_ 11 GNDAYKKKDFDTALKHYDKAKELDPT-NMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSY 89 (128)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhCcc-cHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHH
Confidence 33444444455555544444443222 34444444444444555555555444444311 0000 12344444444
Q ss_pred HhcCCHHHHHHHHHHH
Q 036072 584 SRAGRSYVLDELAQKM 599 (631)
Q Consensus 584 ~~~g~~~~A~~l~~~m 599 (631)
...+++++|.+++++.
T Consensus 90 ~~~~~~~~A~~~~~ka 105 (128)
T d1elra_ 90 FKEEKYKDAIHFYNKS 105 (128)
T ss_dssp HHTTCHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHH
Confidence 5555555555555443
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.29 E-value=0.0023 Score=55.36 Aligned_cols=64 Identities=9% Similarity=0.003 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 036072 503 IHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567 (631)
Q Consensus 503 ~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~ 567 (631)
...|..+..+|.+.|++++|+..++..++.... +...|..+..+|...|++++|+..|+++++.
T Consensus 77 ~~~~~nla~~~~~~~~~~~Ai~~~~~al~~~p~-~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l 140 (169)
T d1ihga1 77 LSCVLNIGACKLKMSDWQGAVDSCLEALEIDPS-NTKALYRRAQGWQGLKEYDQALADLKKAQEI 140 (169)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccchhhhhhhhhhhhhhh-hhhHHHhHHHHHHHccCHHHHHHHHHHHHHh
Confidence 344555666677777777777777777665432 5666666777777777777777777777664
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.23 E-value=0.0082 Score=50.81 Aligned_cols=63 Identities=10% Similarity=-0.054 Sum_probs=41.5
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 036072 504 HTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567 (631)
Q Consensus 504 ~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~ 567 (631)
.+|+.+..+|.+.|++++|++.++..++.... +..+|..+..++...|++++|...|++..+.
T Consensus 68 ~~~~Nla~~~~~l~~~~~Al~~~~~al~~~p~-~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l 130 (153)
T d2fbna1 68 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKN-NVKALYKLGVANMYFGFLEEAKENLYKAASL 130 (153)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHhcccchhhhhhhccccccch-hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHh
Confidence 34555666667777777777777776665322 5666667777777777777777777776664
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.20 E-value=0.00061 Score=70.67 Aligned_cols=114 Identities=11% Similarity=-0.060 Sum_probs=67.0
Q ss_pred HHHHHHHHHHhccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036072 434 AVYTCLITGFGNRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSY 513 (631)
Q Consensus 434 ~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~ 513 (631)
..+..+...+.+.|+.+.|...+....... ...++..+...+...|++++|...|++..+.. +-+...|+.|...|
T Consensus 121 ~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y~~A~~l~-P~~~~~~~~Lg~~~ 196 (497)
T d1ya0a1 121 VKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYYRHAAQLV-PSNGQPYNQLAILA 196 (497)
T ss_dssp ----------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTBSHHHHHHHHHH
T ss_pred HHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCchHHHHHHHHHH
Confidence 345556666777788888877766554321 12456677778888889999999988888753 33457888888888
Q ss_pred HHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 036072 514 FQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQD 552 (631)
Q Consensus 514 ~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g 552 (631)
...|+..+|...|.+.+... .|-..++..|...+.+..
T Consensus 197 ~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 197 SSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSKAL 234 (497)
T ss_dssp HHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHHHT
T ss_pred HHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHhh
Confidence 88899988888888888754 356777888877765543
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=97.17 E-value=0.0044 Score=53.51 Aligned_cols=81 Identities=10% Similarity=0.063 Sum_probs=59.4
Q ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHH
Q 036072 504 HTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADL 583 (631)
Q Consensus 504 ~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~ 583 (631)
.+|+.+..+|.+.|++++|+..++..++.... +...|..+..+|...|++++|...|+++++.. +.+......+..+.
T Consensus 65 ~~~~Nla~~~~~l~~~~~Ai~~~~~al~l~p~-~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l~-P~n~~~~~~l~~~~ 142 (168)
T d1kt1a1 65 AAFLNLAMCYLKLREYTKAVECCDKALGLDSA-NEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQIFMCQ 142 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHH
T ss_pred HHHHhHHHHHHHhhhcccchhhhhhhhhcccc-hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 34666777888899999999999988876433 78888888888999999999999999988754 33444444444433
Q ss_pred Hhc
Q 036072 584 SRA 586 (631)
Q Consensus 584 ~~~ 586 (631)
.+.
T Consensus 143 ~~~ 145 (168)
T d1kt1a1 143 KKA 145 (168)
T ss_dssp HHH
T ss_pred HHH
Confidence 333
|
| >d2fbna1 a.118.8.1 (A:22-174) Putative 70 kda peptidylprolyl isomerase PFL2275c {Plasmodium falciparum [TaxId: 5833]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Putative 70 kda peptidylprolyl isomerase PFL2275c species: Plasmodium falciparum [TaxId: 5833]
Probab=97.17 E-value=0.0055 Score=51.97 Aligned_cols=106 Identities=9% Similarity=-0.088 Sum_probs=82.4
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHcC----CCCC-----------HHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCC
Q 036072 437 TCLITGFGNRRRMDIVYDLLKEMEERG----CPPD-----------GLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKP 501 (631)
Q Consensus 437 ~~li~~~~~~g~~~~A~~l~~~m~~~g----~~p~-----------~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p 501 (631)
..-...+.+.|++.+|+..|.+..+.- ..++ ..+|+.+..+|.+.|++++|++.+...++.. +.
T Consensus 21 ~~~G~~~f~~~~y~~A~~~Y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~Nla~~~~~l~~~~~Al~~~~~al~~~-p~ 99 (153)
T d2fbna1 21 KEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKID-KN 99 (153)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcchhhhhhHHHHHhhhhHHHHHHhhHHHHHHHhcccchhhhhhhcccccc-ch
Confidence 334566778899999999999877531 1112 2356778888999999999999999999864 45
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHH
Q 036072 502 TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVL 544 (631)
Q Consensus 502 ~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~l 544 (631)
+..+|..+..+|...|++++|...|+...+.... |..+...+
T Consensus 100 ~~ka~~~~g~~~~~lg~~~~A~~~~~~al~l~P~-n~~~~~~l 141 (153)
T d2fbna1 100 NVKALYKLGVANMYFGFLEEAKENLYKAASLNPN-NLDIRNSY 141 (153)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTT-CHHHHHHH
T ss_pred hhhhhHHhHHHHHHcCCHHHHHHHHHHHHHhCCC-CHHHHHHH
Confidence 7899999999999999999999999999986433 44444433
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.16 E-value=0.0034 Score=54.93 Aligned_cols=70 Identities=10% Similarity=0.032 Sum_probs=42.4
Q ss_pred HHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH-----cCCCCCHH
Q 036072 315 DTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMID-----KGFKPDVV 384 (631)
Q Consensus 315 ~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~-----~g~~p~~~ 384 (631)
..+..+...+.+.|++++|...++.+....+-+...|..++.+|.+.|+..+|++.|+++.. .|+.|...
T Consensus 68 ~a~~~la~~~~~~g~~~~Al~~~~~al~~~P~~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~ 142 (179)
T d2ff4a2 68 LAHTAKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 142 (179)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHHHCCCchHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHH
Confidence 34455566666666666666666666655555666666666666666666666666666532 35555544
|
| >d1ihga1 a.118.8.1 (A:197-365) Cyclophilin 40 {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Cyclophilin 40 species: Cow (Bos taurus) [TaxId: 9913]
Probab=97.11 E-value=0.003 Score=54.64 Aligned_cols=127 Identities=11% Similarity=-0.008 Sum_probs=73.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCC
Q 036072 249 NSMMSILGRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSK 328 (631)
Q Consensus 249 ~~li~~~~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g 328 (631)
......+.+.|+++.|+..|.++.+.. ............. ... +.....|..+..+|.+.|
T Consensus 31 ~~~~~~~~~~~~y~~Ai~~y~~al~~~-----------~~~~~~~~~~~~~-------~~~-~~~~~~~~nla~~~~~~~ 91 (169)
T d1ihga1 31 KNIGNTFFKSQNWEMAIKKYTKVLRYV-----------EGSRAAAEDADGA-------KLQ-PVALSCVLNIGACKLKMS 91 (169)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHH-----------HHHHHHSCHHHHG-------GGH-HHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhh-----------hhhhhhhhhHHHH-------HhC-hhhHHHHHHHHHHHHhhc
Confidence 344555667788888888887764310 0000000100000 000 223445666667777777
Q ss_pred ChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH
Q 036072 329 LPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLK 395 (631)
Q Consensus 329 ~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~ 395 (631)
++++|+..++...+..+.+..+|..+..+|.+.|++++|+..|+...+.. +.+...+..+..+..+
T Consensus 92 ~~~~Ai~~~~~al~~~p~~~~a~~~~g~~~~~l~~~~~A~~~~~~al~l~-p~n~~~~~~l~~~~~~ 157 (169)
T d1ihga1 92 DWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLKVKQK 157 (169)
T ss_dssp CHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred ccchhhhhhhhhhhhhhhhhhHHHhHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHH
Confidence 77777777777766556667777777777777777777777777777652 1244445444444433
|
| >d1elra_ a.118.8.1 (A:) Hop {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Hop species: Human (Homo sapiens) [TaxId: 9606]
Probab=97.10 E-value=0.0032 Score=51.62 Aligned_cols=92 Identities=21% Similarity=0.140 Sum_probs=46.5
Q ss_pred HHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcC--CCCC----HHHHHHHHHHH
Q 036072 320 LLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKG--FKPD----VVAHNIMLEGL 393 (631)
Q Consensus 320 Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g--~~p~----~~ty~~li~~~ 393 (631)
+...|.+.|++++|...|.+..+..+.+..+|..+..+|.+.|++++|+..++.+.+.. .... ..+|..+-..+
T Consensus 10 ~G~~~~~~~~y~~Ai~~y~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~l~~~~~~~~~~~a~~~~~lg~~~ 89 (128)
T d1elra_ 10 LGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYARIGNSY 89 (128)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHhHHHHHHHcCchHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHHHHH
Confidence 34445555555555555555544444445555555555555555555555555544321 0000 12344455555
Q ss_pred HHcCCHHHHHHHHHHHHH
Q 036072 394 LKIGKRSDAIKLFEVMKA 411 (631)
Q Consensus 394 ~~~g~~~~A~~ll~~m~~ 411 (631)
...+++++|++.|+....
T Consensus 90 ~~~~~~~~A~~~~~kal~ 107 (128)
T d1elra_ 90 FKEEKYKDAIHFYNKSLA 107 (128)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHh
Confidence 556666666666655544
|
| >d2ff4a2 a.118.8.3 (A:105-283) Probable regulatory protein EmbR, middle domain {Mycobacterium tuberculosis [TaxId: 1773]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: BTAD-like domain: Probable regulatory protein EmbR, middle domain species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=97.06 E-value=0.0088 Score=52.18 Aligned_cols=123 Identities=11% Similarity=-0.008 Sum_probs=82.0
Q ss_pred HHHHHHHhccCCHHHHHHHHHHHHHc--CCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHH
Q 036072 437 TCLITGFGNRRRMDIVYDLLKEMEER--GCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYF 514 (631)
Q Consensus 437 ~~li~~~~~~g~~~~A~~l~~~m~~~--g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~ 514 (631)
..........|++++|...|....+. |.... .....+-+...-..+... ....+..+..++.
T Consensus 15 ~~~g~~~~~~g~~e~A~~~~~~AL~l~rG~~l~------------~~~~~~w~~~~r~~l~~~----~~~a~~~la~~~~ 78 (179)
T d2ff4a2 15 KTAGVHAAAAGRFEQASRHLSAALREWRGPVLD------------DLRDFQFVEPFATALVED----KVLAHTAKAEAEI 78 (179)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTCCSSTTG------------GGTTSTTHHHHHHHHHHH----HHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHhhCcccccc------------cCcchHHHHHHHHHHHHH----HHHHHHHHHHHHH
Confidence 33445667778888888888777653 21100 001111111111111111 2345777888999
Q ss_pred HcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH-----CCCCCCHHHH
Q 036072 515 QTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQDRSGEAYKYLEEMLE-----KGMKAPVLDY 576 (631)
Q Consensus 515 ~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~ll~~m~~-----~g~~p~~~~~ 576 (631)
..|++++|...++.+++.... +...|..++.+|...|+..+|++.|+++.+ .|+.|...+-
T Consensus 79 ~~g~~~~Al~~~~~al~~~P~-~e~~~~~l~~al~~~Gr~~eAl~~y~~~~~~L~~eLG~~P~~~l~ 144 (179)
T d2ff4a2 79 ACGRASAVIAELEALTFEHPY-REPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLR 144 (179)
T ss_dssp HTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHH
T ss_pred HCCCchHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHhCCCcCHHHH
Confidence 999999999999999886543 888999999999999999999999988743 5888887653
|
| >d1kt1a1 a.118.8.1 (A:254-421) FKBP51, C-terminal domain {Monkey (Saimiri boliviensis) [TaxId: 27679]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: FKBP51, C-terminal domain species: Monkey (Saimiri boliviensis) [TaxId: 27679]
Probab=96.97 E-value=0.0055 Score=52.83 Aligned_cols=108 Identities=9% Similarity=-0.097 Sum_probs=67.7
Q ss_pred HHHHHHHHHHHhcCChhHHHHHHHHHHHCC---C-CCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHH
Q 036072 246 RTYNSMMSILGRARQFETMVSMLEEMGEKG---L-LSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLL 321 (631)
Q Consensus 246 ~~y~~li~~~~~~g~~~~A~~l~~~m~~~g---~-~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll 321 (631)
..+.-....+.+.|++.+|...|++....- . .+... ...... ....+|+.+.
T Consensus 16 ~~~~e~G~~~~~~~~~~~A~~~Y~~al~~~~~~~~~~~~~-----------------~~~~~~-------~~~~~~~Nla 71 (168)
T d1kt1a1 16 AIVKEKGTVYFKGGKYVQAVIQYGKIVSWLEMEYGLSEKE-----------------SKASES-------FLLAAFLNLA 71 (168)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCCSCCHHH-----------------HHHHHH-------HHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhccchhh-----------------hhhcch-------hHHHHHHhHH
Confidence 345556667778888998888887765321 1 11110 000000 0123455566
Q ss_pred HHHHcCCChHHHHHHHHHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Q 036072 322 ENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDK 377 (631)
Q Consensus 322 ~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~ 377 (631)
.+|.+.|++++|...++......+.+..+|..+..+|...|++++|...|+...+.
T Consensus 72 ~~~~~l~~~~~Ai~~~~~al~l~p~~~~a~~~~~~~~~~l~~~~~A~~~~~~al~l 127 (168)
T d1kt1a1 72 MCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEV 127 (168)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS
T ss_pred HHHHHhhhcccchhhhhhhhhcccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 67777777777777777776655667777777777777777777777777777764
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.85 E-value=0.0014 Score=55.33 Aligned_cols=126 Identities=14% Similarity=0.081 Sum_probs=71.7
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHH
Q 036072 256 GRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQL 335 (631)
Q Consensus 256 ~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~ 335 (631)
-+.+.|++|+..|+...+..+-+..++..+..++...+++..+.+- .+.+++|..
T Consensus 8 ~r~~~fe~A~~~~e~al~~~P~~~~~~~~~g~~l~~~~~~~~~~e~-------------------------~~~~~~Ai~ 62 (145)
T d1zu2a1 8 DRILLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDA-------------------------KQMIQEAIT 62 (145)
T ss_dssp HHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHH-------------------------HHHHHHHHH
T ss_pred HHHccHHHHHHHHHHHHhhCCcchHHHHHHHHHHHHhhhhhhhhHH-------------------------HHHHHHHHH
Confidence 3445577777777777777777777777777666654433222111 112234455
Q ss_pred HHHHHhcccCCChhhHHHHHHHHHhcC-----------CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 036072 336 LFDKLKHRFTPNLTTYTVLLGGWCRVK-----------NLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIK 404 (631)
Q Consensus 336 l~~~m~~~~~p~~~~y~~Li~~~~~~g-----------~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ 404 (631)
.|++..+-.+.+..+|..+..+|...| .+++|.+.|+...+. .|+...|..-+..+ .+|.+
T Consensus 63 ~~~kAl~l~P~~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~~~L~~~------~ka~~ 134 (145)
T d1zu2a1 63 KFEEALLIDPKKDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT------AKAPQ 134 (145)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH------HTHHH
T ss_pred HHHHHHHhcchhhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHHHHHHHH------HHHHH
Confidence 555444433444555555555554432 357777788777764 56666655544443 45667
Q ss_pred HHHHHHHcCC
Q 036072 405 LFEVMKAKGP 414 (631)
Q Consensus 405 ll~~m~~~g~ 414 (631)
++.+..+.|+
T Consensus 135 ~~~e~~k~~~ 144 (145)
T d1zu2a1 135 LHAEAYKQGL 144 (145)
T ss_dssp HHHHHHHSSS
T ss_pred HHHHHHHHhc
Confidence 7777666553
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.77 E-value=0.00096 Score=62.65 Aligned_cols=53 Identities=9% Similarity=-0.036 Sum_probs=36.9
Q ss_pred HhcCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhC
Q 036072 256 GRARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKY 308 (631)
Q Consensus 256 ~~~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~ 308 (631)
.+.|++++|+..+++..+..+-+...+..+...++..|++++|++.|+...+.
T Consensus 7 L~~G~l~eAl~~l~~al~~~P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l 59 (264)
T d1zbpa1 7 LSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKL 59 (264)
T ss_dssp TTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 45567777777777777776666677777777777777777777777766665
|
| >d1zbpa1 e.61.1.1 (A:2-265) Hypothetical protein VPA1032 {Vibrio parahaemolyticus [TaxId: 670]} | Back information, alignment and structure |
|---|
class: Multi-domain proteins (alpha and beta) fold: ImpE-like superfamily: ImpE-like family: ImpE-like domain: Hypothetical protein VPA1032 species: Vibrio parahaemolyticus [TaxId: 670]
Probab=96.74 E-value=0.0012 Score=61.95 Aligned_cols=52 Identities=10% Similarity=0.159 Sum_probs=29.8
Q ss_pred hcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Q 036072 480 IQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR 532 (631)
Q Consensus 480 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~ 532 (631)
+.|++++|+..+++.++.. +-|...+..+...|+..|++++|.+.++...+.
T Consensus 8 ~~G~l~eAl~~l~~al~~~-P~d~~ar~~La~lL~~~G~~e~A~~~l~~a~~l 59 (264)
T d1zbpa1 8 SEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL 59 (264)
T ss_dssp TTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh
Confidence 4455666666666655543 334555566666666666666666666665554
|
| >d1zu2a1 a.118.8.1 (A:1-145) Mitochondrial import receptor subunit tom20-3 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondrial import receptor subunit tom20-3 species: Thale cress (Arabidopsis thaliana) [TaxId: 3702]
Probab=96.47 E-value=0.0079 Score=50.42 Aligned_cols=76 Identities=11% Similarity=0.041 Sum_probs=38.8
Q ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC-----------CHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcC
Q 036072 519 YEMGRKVWDEMIRRGCCPDDNSYTVLIGGLISQD-----------RSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAG 587 (631)
Q Consensus 519 ~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~~g-----------~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g 587 (631)
+++|+..|++.++.... +..+|..+..+|...| .+++|.+.|++.++. .|+...|..-+..+
T Consensus 57 ~~~Ai~~~~kAl~l~P~-~~~a~~~lG~~y~~~g~~~~~~~~~~~~~~~A~~~~~kal~l--~P~~~~~~~~L~~~---- 129 (145)
T d1zu2a1 57 IQEAITKFEEALLIDPK-KDEAVWCIGNAYTSFAFLTPDETEAKHNFDLATQFFQQAVDE--QPDNTHYLKSLEMT---- 129 (145)
T ss_dssp HHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHHHH--CTTCHHHHHHHHHH----
T ss_pred HHHHHHHHHHHHHhcch-hhHHHhhHHHHHHHcccchhhHHHHHHhHHHhhhhhhccccc--CCCHHHHHHHHHHH----
Confidence 35556666655554322 4555555555554433 246677777777664 45555544433333
Q ss_pred CHHHHHHHHHHHHhcC
Q 036072 588 RSYVLDELAQKMRFSG 603 (631)
Q Consensus 588 ~~~~A~~l~~~m~~~g 603 (631)
..|.+++.+..+.|
T Consensus 130 --~ka~~~~~e~~k~~ 143 (145)
T d1zu2a1 130 --AKAPQLHAEAYKQG 143 (145)
T ss_dssp --HTHHHHHHHHHHSS
T ss_pred --HHHHHHHHHHHHHh
Confidence 23444444444433
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.20 E-value=0.044 Score=46.12 Aligned_cols=91 Identities=14% Similarity=0.083 Sum_probs=55.7
Q ss_pred HHHHHHcCCHHHHHHHHHHHHHcCC-CCC----------HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC-----CCCCC-
Q 036072 510 MKSYFQTGNYEMGRKVWDEMIRRGC-CPD----------DNSYTVLIGGLISQDRSGEAYKYLEEMLEK-----GMKAP- 572 (631)
Q Consensus 510 i~~~~~~g~~~~A~~~~~~m~~~g~-~p~----------~~t~~~li~~~~~~g~~~~A~~ll~~m~~~-----g~~p~- 572 (631)
...+...|++++|+..|++.++... .|+ ..+|+.+..+|...|++++|.+.+++.+.. ...++
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 3344455666666666666654210 111 345666777777777777777777776532 11222
Q ss_pred ----HHHHHHHHHHHHhcCCHHHHHHHHHHHH
Q 036072 573 ----VLDYNKFAADLSRAGRSYVLDELAQKMR 600 (631)
Q Consensus 573 ----~~~~~~li~~~~~~g~~~~A~~l~~~m~ 600 (631)
...|..+..+|...|++++|.+.+++..
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al 127 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVV 127 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHH
Confidence 1246667788888888888888887743
|
| >d2hr2a1 a.118.8.8 (A:2-157) Hypothetical protein CT2138 {Chlorobium tepidum [TaxId: 1097]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: CT2138-like domain: Hypothetical protein CT2138 species: Chlorobium tepidum [TaxId: 1097]
Probab=96.13 E-value=0.046 Score=45.94 Aligned_cols=92 Identities=12% Similarity=0.052 Sum_probs=63.6
Q ss_pred HHHHHhcCChhHHHHHHHHHHHCCC-CC----------CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-----CCCCC-
Q 036072 475 IKLMKIQKMPDEAVRIYKEMVRSGF-KP----------TIHTYNMIMKSYFQTGNYEMGRKVWDEMIRR-----GCCPD- 537 (631)
Q Consensus 475 i~~~~~~g~~~~A~~l~~~m~~~g~-~p----------~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~-----g~~p~- 537 (631)
...+...|++++|+..|++.++..- .| ...+|+.+..+|...|++++|...+++.++. ...++
T Consensus 16 g~~~~~~g~y~~Ai~~y~~Al~i~~~~~~~~~~~~~~~~a~~~~nlg~~~~~lg~~~~A~~~~~~al~~~~~~~~~~~~~ 95 (156)
T d2hr2a1 16 AQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDE 95 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhChhhhhhhhcccchhHHHHHHHHHHHHHHcCccchhhHhhhhhhhcccccccccccc
Confidence 3345566777777777777765210 11 1356778888888889988888888877642 12222
Q ss_pred ----HHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Q 036072 538 ----DNSYTVLIGGLISQDRSGEAYKYLEEMLE 566 (631)
Q Consensus 538 ----~~t~~~li~~~~~~g~~~~A~~ll~~m~~ 566 (631)
...|+.+..+|...|++++|+..|++.++
T Consensus 96 ~~~~~~a~~~~g~~~~~lg~~eeA~~~~~~Al~ 128 (156)
T d2hr2a1 96 GKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 128 (156)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cchhHHHHhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence 23566778889999999999999988764
|
| >d1ya0a1 a.118.8.1 (A:1-497) SMG-7 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: SMG-7 species: Human (Homo sapiens) [TaxId: 9606]
Probab=95.77 E-value=0.019 Score=58.81 Aligned_cols=136 Identities=10% Similarity=-0.070 Sum_probs=78.1
Q ss_pred cCChhHHHHHHHHHHHCCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHH
Q 036072 258 ARQFETMVSMLEEMGEKGLLSMETFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLF 337 (631)
Q Consensus 258 ~g~~~~A~~l~~~m~~~g~~~~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~ 337 (631)
.+.++.|+..+.......+.+...+..+...+.+.|+.++|...+....+.. ...++..+.+.+...|++++|...|
T Consensus 99 ~~~Y~~ai~~l~~~~~l~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~---~~~~~~~LG~l~~~~~~~~~A~~~y 175 (497)
T d1ya0a1 99 SGFYTQLLQELCTVFNVDLPCRVKSSQLGIISNKQTHTSAIVKPQSSSCSYI---CQHCLVHLGDIARYRNQTSQAESYY 175 (497)
T ss_dssp HHHHHHHHHHHTC-------------------------------CCHHHHHH---HHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCChhhHHHHHHhHHHHHhCCCHHHHHHHHHHHhCCC---HHHHHHHHHHHHHHcccHHHHHHHH
Confidence 3445555555544444444455577777788888888888887776665432 2356777888888899999999999
Q ss_pred HHHhcccCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcC
Q 036072 338 DKLKHRFTPNLTTYTVLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIG 397 (631)
Q Consensus 338 ~~m~~~~~p~~~~y~~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g 397 (631)
++..+..+.+...|+.|...+...|+..+|...|.+..... .|...++..|...+.+..
T Consensus 176 ~~A~~l~P~~~~~~~~Lg~~~~~~~~~~~A~~~y~ral~~~-~~~~~a~~nL~~~~~~~~ 234 (497)
T d1ya0a1 176 RHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYCRSIAVK-FPFPAASTNLQKALSKAL 234 (497)
T ss_dssp HHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHHHHHSSS-BCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCchHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC-CCCHHHHHHHHHHHHHhh
Confidence 99887777778899999999999999999999998888753 467777888877766543
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.92 E-value=0.32 Score=39.16 Aligned_cols=110 Identities=9% Similarity=0.039 Sum_probs=47.7
Q ss_pred CHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHH----cCCHHHHH
Q 036072 448 RMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQ----TGNYEMGR 523 (631)
Q Consensus 448 ~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~----~g~~~~A~ 523 (631)
++++|.++|.+..+.|.. ..+..|. .....+.++|.+++++..+.| +......|...|.. ..+.++|.
T Consensus 8 d~~~A~~~~~kaa~~g~~---~a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A~ 79 (133)
T d1klxa_ 8 DLKKAIQYYVKACELNEM---FGCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAA 79 (133)
T ss_dssp HHHHHHHHHHHHHHTTCT---THHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHH
T ss_pred CHHHHHHHHHHHHHCCCh---hhhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHHH
Confidence 566666666666655432 1111221 122334555555555555544 22333333333332 22345555
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHHHHHHHHHHHCC
Q 036072 524 KVWDEMIRRGCCPDDNSYTVLIGGLIS----QDRSGEAYKYLEEMLEKG 568 (631)
Q Consensus 524 ~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A~~ll~~m~~~g 568 (631)
++|++..+.| +......|...|.. ..+.++|.++|++..+.|
T Consensus 80 ~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G 125 (133)
T d1klxa_ 80 QYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 125 (133)
T ss_dssp HHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCC
Confidence 5555554443 23333333333332 234444444444444443
|
| >d1klxa_ a.118.18.1 (A:) Cysteine rich protein B (HcpB) {Helicobacter pylori [TaxId: 210]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: HCP-like family: HCP-like domain: Cysteine rich protein B (HcpB) species: Helicobacter pylori [TaxId: 210]
Probab=94.86 E-value=0.39 Score=38.60 Aligned_cols=113 Identities=9% Similarity=-0.109 Sum_probs=83.3
Q ss_pred CChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHH----cCCHHHH
Q 036072 482 KMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRKVWDEMIRRGCCPDDNSYTVLIGGLIS----QDRSGEA 557 (631)
Q Consensus 482 g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~~~~~m~~~g~~p~~~t~~~li~~~~~----~g~~~~A 557 (631)
.+.++|.++|++..+.|.. . ....|. .....+.++|.+++++..+.| +......|-..|.. ..+.++|
T Consensus 7 kd~~~A~~~~~kaa~~g~~-~--a~~~l~--~~~~~~~~~a~~~~~~aa~~g---~~~a~~~Lg~~y~~g~~~~~d~~~A 78 (133)
T d1klxa_ 7 KDLKKAIQYYVKACELNEM-F--GCLSLV--SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 78 (133)
T ss_dssp HHHHHHHHHHHHHHHTTCT-T--HHHHHH--TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHHCCCh-h--hhhhhc--cccccCHHHHHHHHhhhhccc---chhhhhhHHHhhhhccccchhhHHH
Confidence 3678999999999888732 2 222232 234568899999999998876 56666666666664 4578999
Q ss_pred HHHHHHHHHCCCCCCHHHHHHHHHHHHh----cCCHHHHHHHHHHHHhcCCC
Q 036072 558 YKYLEEMLEKGMKAPVLDYNKFAADLSR----AGRSYVLDELAQKMRFSGKF 605 (631)
Q Consensus 558 ~~ll~~m~~~g~~p~~~~~~~li~~~~~----~g~~~~A~~l~~~m~~~g~~ 605 (631)
.++|++..+.| ++.....|...|.. ..+.++|.+++++--+.|..
T Consensus 79 ~~~~~~aa~~g---~~~a~~~Lg~~y~~G~gv~~d~~~A~~~~~~Aa~~G~~ 127 (133)
T d1klxa_ 79 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGSE 127 (133)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhhhhccC---cchHHHHHHHHHHcCCccCCCHHHHHHHHHHHHHCCCH
Confidence 99999999987 44556667777665 45789999999998888753
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.84 E-value=0.09 Score=39.89 Aligned_cols=22 Identities=5% Similarity=-0.191 Sum_probs=9.5
Q ss_pred HHHHHHHHccCHHHHHHHHHHH
Q 036072 284 IAMNAFAAAKERKKAVAIFELM 305 (631)
Q Consensus 284 ~li~~~~~~g~~~~A~~v~~~m 305 (631)
.+...+.+.|++++|+..|++.
T Consensus 10 ~lG~~~~~~g~y~~A~~~~~~A 31 (95)
T d1tjca_ 10 ELGKVAYTEADYYHTELWMEQA 31 (95)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHH
Confidence 3344444444444444444433
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=94.46 E-value=0.84 Score=35.89 Aligned_cols=121 Identities=16% Similarity=0.072 Sum_probs=82.1
Q ss_pred HccCHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccC------------------CChhhHH
Q 036072 291 AAKERKKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFT------------------PNLTTYT 352 (631)
Q Consensus 291 ~~g~~~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~------------------p~~~~y~ 352 (631)
-.|..++..+++.+... ..+..-||.+|.-....-+-+...++++.+-+-+. .+...++
T Consensus 14 ldG~ve~Gveii~k~~~---ss~~~E~NW~ICNiidt~dC~~v~~~Ld~IG~~FDls~C~Nlk~vv~C~~~~n~~se~vd 90 (161)
T d1wy6a1 14 LDGYIDEGVKIVLEITK---SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKCQNLKSVVECGVINNTLNEHVN 90 (161)
T ss_dssp HTTCHHHHHHHHHHHHH---HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGCSCTHHHHHHHHHTTCCCHHHH
T ss_pred HhhhHHhHHHHHHHHcc---cCCccccceeeeecccccchHHHHHHHHHHhhhcCchhhhcHHHHHHHHHHhcchHHHHH
Confidence 34556666666665554 23445555555555555555555555555433211 1344566
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC
Q 036072 353 VLLGGWCRVKNLMEAGRVWNEMIDKGFKPDVVAHNIMLEGLLKIGKRSDAIKLFEVMKAKGPS 415 (631)
Q Consensus 353 ~Li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~ty~~li~~~~~~g~~~~A~~ll~~m~~~g~~ 415 (631)
..++...+.|.-+.-.++++++.+. -++++...-.+..+|.+.|...++-+++.+..+.|+.
T Consensus 91 lALd~lv~~~kkd~Ld~i~~~l~kn-~~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 91 KALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhc-CCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 7788888899999999999997774 4678888888899999999999999999999988865
|
| >d1tjca_ a.118.8.1 (A:) Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 {Human (Homo sapiens) [TaxId: 9606]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Prolyl 4-hydroxylase alpha-1 subunit, P4HA1 species: Human (Homo sapiens) [TaxId: 9606]
Probab=94.38 E-value=0.11 Score=39.40 Aligned_cols=76 Identities=7% Similarity=-0.022 Sum_probs=56.2
Q ss_pred CHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCC------CC-HHHHHHHHHHHHHccCHHHHHHHHHHHHhCCCCcCHHH
Q 036072 244 NSRTYNSMMSILGRARQFETMVSMLEEMGEKGL------LS-METFKIAMNAFAAAKERKKAVAIFELMNKYKFKAGVDT 316 (631)
Q Consensus 244 ~~~~y~~li~~~~~~g~~~~A~~l~~~m~~~g~------~~-~~~~~~li~~~~~~g~~~~A~~v~~~m~~~g~~~~~~~ 316 (631)
+...+-.+-..+.+.|+++.|+..|++..+... .+ ..++..+..++.+.|++++|++.++++++.. +-+..+
T Consensus 4 saddc~~lG~~~~~~g~y~~A~~~~~~Al~~~~~~~~~~~~~~~~l~~Lg~~~~~~g~~~~A~~~y~~aL~l~-P~~~~a 82 (95)
T d1tjca_ 4 TAEDSFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD-PEHQRA 82 (95)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHH
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHhhhhccCccHHHHHHHHhhHHHhcCChHHHHHHHHHHHHhC-cCCHHH
Confidence 355566778889999999999999998765321 22 4578888888888899999998888888764 334555
Q ss_pred HHHH
Q 036072 317 INCL 320 (631)
Q Consensus 317 ~~~L 320 (631)
++.+
T Consensus 83 ~~Nl 86 (95)
T d1tjca_ 83 NGNL 86 (95)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 5444
|
| >d1wy6a1 a.118.20.1 (A:7-167) Hypothetical protein ST1625 {Archaeon Sulfolobus tokodaii [TaxId: 111955]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Hypothetical protein ST1625 family: Hypothetical protein ST1625 domain: Hypothetical protein ST1625 species: Archaeon Sulfolobus tokodaii [TaxId: 111955]
Probab=93.95 E-value=1.1 Score=35.25 Aligned_cols=68 Identities=15% Similarity=0.083 Sum_probs=55.2
Q ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCC
Q 036072 537 DDNSYTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYNKFAADLSRAGRSYVLDELAQKMRFSGKF 605 (631)
Q Consensus 537 ~~~t~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~~li~~~~~~g~~~~A~~l~~~m~~~g~~ 605 (631)
+...++..++.+..+|+-+.-.++++++.+.+ .+++...-.+..+|.+.|...++.+++.+.-+.|..
T Consensus 85 ~se~vdlALd~lv~~~kkd~Ld~i~~~l~kn~-~i~~~~llkia~A~kkig~~re~nell~~ACe~G~K 152 (161)
T d1wy6a1 85 LNEHVNKALDILVIQGKRDKLEEIGREILKNN-EVSASILVAIANALRRVGDERDATTLLIEACKKGEK 152 (161)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--C-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHHhHH
Confidence 33455666778888999999999999877754 778888889999999999999999999999988854
|
| >d1v54e_ a.118.11.1 (E:) Cytochrome c oxidase subunit E {Cow (Bos taurus) [TaxId: 9913]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Cytochrome c oxidase subunit E family: Cytochrome c oxidase subunit E domain: Cytochrome c oxidase subunit E species: Cow (Bos taurus) [TaxId: 9913]
Probab=88.02 E-value=1.2 Score=33.19 Aligned_cols=60 Identities=13% Similarity=0.144 Sum_probs=37.1
Q ss_pred HHHHHHHHHHHhCCCCcCHHHHHHHHHHHHcCCChHHHHHHHHHHhcccCCChhhHHHHH
Q 036072 296 KKAVAIFELMNKYKFKAGVDTINCLLENLGRSKLPKEAQLLFDKLKHRFTPNLTTYTVLL 355 (631)
Q Consensus 296 ~~A~~v~~~m~~~g~~~~~~~~~~Ll~~~~~~g~~~~A~~l~~~m~~~~~p~~~~y~~Li 355 (631)
-++.+.++.+....+.|++.+..+.+++|.+.+++..|.++|+.++.+..++..+|..++
T Consensus 23 we~rrgmN~l~~~DlVPeP~Ii~aALrAcRRvND~alAVR~lE~vK~K~~~~k~~y~yil 82 (105)
T d1v54e_ 23 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKAGPHKEIYPYVI 82 (105)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCTTHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 345555555556666666777777777777777777777777666655444444555544
|
| >d1qsaa1 a.118.5.1 (A:1-450) 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain {Escherichia coli [TaxId: 562]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: Bacterial muramidases family: Bacterial muramidases domain: 70 KDa soluble lytic transglycosylase (SLT70), superhelical domain species: Escherichia coli [TaxId: 562]
Probab=84.86 E-value=18 Score=34.84 Aligned_cols=150 Identities=6% Similarity=-0.057 Sum_probs=83.3
Q ss_pred ccCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhcCChhHHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCCHHHHHH
Q 036072 445 NRRRMDIVYDLLKEMEERGCPPDGLTYNALIKLMKIQKMPDEAVRIYKEMVRSGFKPTIHTYNMIMKSYFQTGNYEMGRK 524 (631)
Q Consensus 445 ~~g~~~~A~~l~~~m~~~g~~p~~~t~~~li~~~~~~g~~~~A~~l~~~m~~~g~~p~~~t~~~Li~~~~~~g~~~~A~~ 524 (631)
..+..+.+...+......+. +.......+......+++..+...+..|.... .-...-..-+..++...|+.++|..
T Consensus 264 ~~~~~~~a~~~~~~~~~~~~--~~~~~~w~~~~al~~~~~~~~~~~~~~l~~~~-~~~~r~~YW~gRa~~~~G~~~~A~~ 340 (450)
T d1qsaa1 264 GNDVTDEQAKWRDDAIMRSQ--STSLIERRVRMALGTGDRRGLNTWLARLPMEA-KEKDEWRYWQADLLLERGREAEAKE 340 (450)
T ss_dssp STTCCHHHHHHHHHHHHTCC--CHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTG-GGSHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HcCchHHHHHHHHhhccccc--chHHHHHHHHHHHHcCChHHHHHHHHhcCccc-ccHHHHHHHHHHHHHHcCChhhHHH
Confidence 34445555555554444322 22333333333444556666666655553221 1123333445556666666666666
Q ss_pred HHHHHHHc------------CCCC-----------C-HHH---HHHHHHHHHHcCCHHHHHHHHHHHHHCCCCCCHHHHH
Q 036072 525 VWDEMIRR------------GCCP-----------D-DNS---YTVLIGGLISQDRSGEAYKYLEEMLEKGMKAPVLDYN 577 (631)
Q Consensus 525 ~~~~m~~~------------g~~p-----------~-~~t---~~~li~~~~~~g~~~~A~~ll~~m~~~g~~p~~~~~~ 577 (631)
.|...... |..+ . ... -..-+..+...|...+|...+..+.+. .+.....
T Consensus 341 ~~~~~a~~~~fYG~LAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~ra~~L~~~g~~~~A~~e~~~l~~~---~~~~~~~ 417 (450)
T d1qsaa1 341 ILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS---KSKTEQA 417 (450)
T ss_dssp HHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CCHHHHH
T ss_pred HHHHHhcCCChHHHHHHHHcCCCCCCCcCCCCccHHHhhhcChHHHHHHHHHHcCCchHHHHHHHHHHhC---CCHHHHH
Confidence 66554321 1100 0 000 112345677889999999999888754 2556777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHH
Q 036072 578 KFAADLSRAGRSYVLDELAQKMR 600 (631)
Q Consensus 578 ~li~~~~~~g~~~~A~~l~~~m~ 600 (631)
.+.....+.|.++.|+....+.+
T Consensus 418 ~la~lA~~~g~~~~aI~a~~~~~ 440 (450)
T d1qsaa1 418 QLARYAFNNQWWDLSVQATIAGK 440 (450)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHTT
T ss_pred HHHHHHHHCCChhHHHHHHHHHH
Confidence 88888899999999988777664
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=82.88 E-value=8.5 Score=29.92 Aligned_cols=66 Identities=14% Similarity=0.200 Sum_probs=32.7
Q ss_pred CCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHHcCCCCC-HHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Q 036072 501 PTIHTYNMIMKSYFQTG---NYEMGRKVWDEMIRRGCCPD-DNSYTVLIGGLISQDRSGEAYKYLEEMLEK 567 (631)
Q Consensus 501 p~~~t~~~Li~~~~~~g---~~~~A~~~~~~m~~~g~~p~-~~t~~~li~~~~~~g~~~~A~~ll~~m~~~ 567 (631)
++..|--....++++.. +.++|+.+++++.+.+.. + ...+-.|.-+|.+.|++++|.++++.+++.
T Consensus 33 ~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~p~-~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~i 102 (124)
T d2pqrb1 33 ATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAES-RRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 102 (124)
T ss_dssp SCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGG-GHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred CCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcCch-hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcc
Confidence 34444444444444433 234555666655543211 2 234444555566666666666666666553
|
| >d2pqrb1 a.118.8.1 (B:5-128) Mitochondria fission protein Fis1 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} | Back information, alignment and structure |
|---|
class: All alpha proteins fold: alpha-alpha superhelix superfamily: TPR-like family: Tetratricopeptide repeat (TPR) domain: Mitochondria fission protein Fis1 species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=81.71 E-value=9 Score=29.78 Aligned_cols=68 Identities=10% Similarity=0.017 Sum_probs=51.2
Q ss_pred CCCHHHHHHHHHHHHHcCC---HHHHHHHHHHHHHCCCCCCH-HHHHHHHHHHHhcCCHHHHHHHHHHHHhcC
Q 036072 535 CPDDNSYTVLIGGLISQDR---SGEAYKYLEEMLEKGMKAPV-LDYNKFAADLSRAGRSYVLDELAQKMRFSG 603 (631)
Q Consensus 535 ~p~~~t~~~li~~~~~~g~---~~~A~~ll~~m~~~g~~p~~-~~~~~li~~~~~~g~~~~A~~l~~~m~~~g 603 (631)
.+...|-=.+..+++++.+ .++++.+|++....+ +.+. ..+-.|.-+|.+.|++++|.+.++++.+..
T Consensus 32 ~~s~qt~F~YAw~Lv~S~~~~d~~~gI~lLe~~~~~~-p~~~rd~lY~Lav~yyklgdy~~A~~~~~~~L~ie 103 (124)
T d2pqrb1 32 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEA-ESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHE 103 (124)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHC-GGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC
T ss_pred CCCcchHHHHHHHHHcCCcHHHHHHHHHHHHHHHhcC-chhHHHHHHHHHHHHHHHhhHHHHHHHHHHHHccC
Confidence 4566665566777776644 478999999998753 2233 456678889999999999999999987754
|