Citrus Sinensis ID: 036073

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-
PLTISVTPNDGTKVRISFKGSPGSFTEDAALKAYPNCETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLRHRLHIVGEVQFVANFCLLALPGIREEKLKCVLSHPQALASSDIVQTQLGVARENIDDTASAAQYVASNGLRDAGVVASARAAEIYGLNILADRIQDDPDNITRFLVLARDPIMPRTDKPFKTSIVFTLDEGPGVLTKALAVFALREINLTKVFVARVYFC
ccccccccccccccEEEEEcccccHHHHHHHHHccccEEEccccHHHHHHHHHcccccEEEEEccccccccHHHHHHHHHccccEEEEEEEEEEEEEEcccccccccccEEEEccHHHHHHHHHHHHHccccEEEcccHHHHHHHHHHcccccEEEEccHHHHHHHccHHHHcccccccccccEEEEEEccccccccccccEEEEEEEEcccccHHHHHHHHHHHccccEEcccccccccc
cccccccccccccEEEEEEccccccHHHHHHHHcccccccccHHHHHHHHHHHcccccEEEEEEEccccccHHHHHHHHHccccEEEEEEEEEEEEEEEEcccccHHHHHEEccccHHHHHHHHHHHccccEEEEcccHHHHHHHHHHccccccEEEccHHHHHHHcHHHHHHHccccccccEEEEEEEcccccccccccccEEEEEEcccccHHHHHHHHHHHHccccEEEEcccccccc
pltisvtpndgtkvrisfkgspgsftedaalkaypncetipcdEFEEAFKAVELWLAEKailpienssggsihhnYDLLLRHRLHIVGEVQFVANFCLLalpgireeKLKCvlshpqalassdIVQTQLgvarenidDTASAAQYVASNGLRDAGVVASARAAEIYGLNIladriqddpdNITRFLVlardpimprtdkpfktSIVFtldegpgvLTKALAVFALREINLTKVFVARVYFC
pltisvtpndgtkvrisfkgspgsfTEDAALKAYPNCETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLRHRLHIVGEVQFVANFCLLALPGIREEKLKCVLSHPQALASSDIVQTQLGVARENIDDTASAAQYVASNGLRDAGVVASARAAEIYGLNiladriqddpDNITRFLVlardpimprtdkpFKTSIVFTLDEGPGVLTKALAVFALREINLTKVFVARVYFC
PLTISVTPNDGTKVRISFKGSPGSFTEDAALKAYPNCETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLRHRLHIVGEVQFVANFCLLALPGIREEKLKCVLSHPQALASSDIVQTQLGVARENIDDTASAAQYVASNGLRDAGVVASARAAEIYGLNILADRIQDDPDNITRFLVLARDPIMPRTDKPFKTSIVFTLDEGPGVLTKALAVFALREINLTKVFVARVYFC
***************************DAALKAYPNCETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLRHRLHIVGEVQFVANFCLLALPGIREEKLKCVLSHPQALASSDIVQTQLGVARENIDDTASAAQYVASNGLRDAGVVASARAAEIYGLNILADRIQDDPDNITRFLVLARDPIMPRTDKPFKTSIVFTLDEGPGVLTKALAVFALREINLTKVFVARVYF*
***************ISFKGSPGSFTEDAALKAYPNCETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLRHRLHIVGEVQFVANFCLLALPGIREEKLKCVLSHPQALASSDIVQTQLGVARENIDDTASAAQYVASNGLRDAGVVASARAAEIYGLNILADRIQDDPDNITRFLVLARDPIMPRTDKPFKTSIVFTLDEGPGVLTKALAVFALREINLTKVFVARVYFC
PLTISVTPNDGTKVRISFKGSPGSFTEDAALKAYPNCETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLRHRLHIVGEVQFVANFCLLALPGIREEKLKCVLSHPQALASSDIVQTQLGVARENIDDTASAAQYVASNGLRDAGVVASARAAEIYGLNILADRIQDDPDNITRFLVLARDPIMPRTDKPFKTSIVFTLDEGPGVLTKALAVFALREINLTKVFVARVYFC
*****V****GTKVRISFKGSPGSFTEDAALKAYPNCETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLRHRLHIVGEVQFVANFCLLALPGIREEKLKCVLSHPQALASSDIVQTQLGVARENIDDTASAAQYVASNGLRDAGVVASARAAEIYGLNILADRIQDDPDNITRFLVLARDPIMPRTDKPFKTSIVFTLDEGPGVLTKALAVFALREINLTKVFVARV**C
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiii
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
PLTISVTPNDGTKVRISFKGSPGSFTEDAALKAYPNCETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLRHRLHIVGEVQFVANFCLLALPGIREEKLKCVLSHPQALASSDIVQTQLGVARENIDDTASAAQYVASNGLRDAGVVASARAAEIYGLNILADRIQDDPDNITRFLVLARDPIMPRTDKPFKTSIVFTLDEGPGVLTKALAVFALREINLTKVFVARVYFC
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query241 2.2.26 [Sep-21-2011]
Q9SA96392 Arogenate dehydratase/pre no no 0.966 0.594 0.648 4e-86
Q9SGD6413 Arogenate dehydratase/pre no no 0.954 0.556 0.625 1e-79
Q9ZUY3424 Arogenate dehydratase 3, no no 0.966 0.549 0.609 1e-78
Q9SSE7381 Arogenate dehydratase/pre no no 0.954 0.603 0.625 1e-76
O22241424 Arogenate dehydratase 4, no no 0.966 0.549 0.6 2e-74
Q9FNJ8425 Arogenate dehydratase 5, no no 0.966 0.548 0.604 4e-70
Q8K9F8385 P-protein OS=Buchnera aph yes no 0.925 0.579 0.298 8e-26
P43900385 P-protein OS=Haemophilus yes no 0.937 0.587 0.298 2e-24
O67085362 P-protein OS=Aquifex aeol yes no 0.896 0.596 0.352 3e-24
P57472385 P-protein OS=Buchnera aph yes no 0.925 0.579 0.315 5e-24
>sp|Q9SA96|AROD1_ARATH Arogenate dehydratase/prephenate dehydratase 1, chloroplastic OS=Arabidopsis thaliana GN=ADT1 PE=1 SV=1 Back     alignment and function desciption
 Score =  317 bits (813), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 153/236 (64%), Positives = 192/236 (81%), Gaps = 3/236 (1%)

Query: 1   PLTI-SVTPNDG--TKVRISFKGSPGSFTEDAALKAYPNCETIPCDEFEEAFKAVELWLA 57
           PLT  S+  +DG  +KVRISF+G PG+++E AALKA+PNCET+PC++FE AF+AVELWL 
Sbjct: 90  PLTANSLYSSDGDDSKVRISFQGIPGAYSETAALKAFPNCETVPCEQFEAAFQAVELWLV 149

Query: 58  EKAILPIENSSGGSIHHNYDLLLRHRLHIVGEVQFVANFCLLALPGIREEKLKCVLSHPQ 117
           +KA+LPIENS GGSIH NYDLLLRHRLHIV EV    N CLL +PG+++E +KCVLSHPQ
Sbjct: 150 DKAVLPIENSVGGSIHRNYDLLLRHRLHIVQEVHLPVNHCLLGVPGVKKEDIKCVLSHPQ 209

Query: 118 ALASSDIVQTQLGVARENIDDTASAAQYVASNGLRDAGVVASARAAEIYGLNILADRIQD 177
           AL         LG+ R +  DTA+AAQ V+S+G  D G +AS RAA IYGL+ILA+ IQD
Sbjct: 210 ALDQCVNSLNNLGIQRISAKDTATAAQTVSSSGKIDVGAIASVRAANIYGLDILAENIQD 269

Query: 178 DPDNITRFLVLARDPIMPRTDKPFKTSIVFTLDEGPGVLTKALAVFALREINLTKV 233
           D +N+TRFL+LAR+P++PRTD+P+KTSIVF+L+EGPGVL KALAVFALR INL+K+
Sbjct: 270 DVNNVTRFLILAREPMIPRTDRPYKTSIVFSLEEGPGVLFKALAVFALRSINLSKI 325
Converts the prephenate produced from the shikimate-chorismate pathway into phenylalanine.
Arabidopsis thaliana (taxid: 3702)
EC: 4EC: .EC: 2EC: .EC: 1EC: .EC: 9EC: 1
>sp|Q9SGD6|AROD6_ARATH Arogenate dehydratase/prephenate dehydratase 6, chloroplastic OS=Arabidopsis thaliana GN=ADT6 PE=1 SV=1 Back     alignment and function description
>sp|Q9ZUY3|AROD3_ARATH Arogenate dehydratase 3, chloroplastic OS=Arabidopsis thaliana GN=ADT3 PE=1 SV=1 Back     alignment and function description
>sp|Q9SSE7|AROD2_ARATH Arogenate dehydratase/prephenate dehydratase 2, chloroplastic OS=Arabidopsis thaliana GN=ADT2 PE=1 SV=1 Back     alignment and function description
>sp|O22241|AROD4_ARATH Arogenate dehydratase 4, chloroplastic OS=Arabidopsis thaliana GN=ADT4 PE=1 SV=1 Back     alignment and function description
>sp|Q9FNJ8|AROD5_ARATH Arogenate dehydratase 5, chloroplastic OS=Arabidopsis thaliana GN=ADT5 PE=1 SV=1 Back     alignment and function description
>sp|Q8K9F8|PHEA_BUCAP P-protein OS=Buchnera aphidicola subsp. Schizaphis graminum (strain Sg) GN=pheA PE=4 SV=1 Back     alignment and function description
>sp|P43900|PHEA_HAEIN P-protein OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=pheA PE=4 SV=1 Back     alignment and function description
>sp|O67085|PHEA_AQUAE P-protein OS=Aquifex aeolicus (strain VF5) GN=pheA PE=4 SV=1 Back     alignment and function description
>sp|P57472|PHEA_BUCAI P-protein OS=Buchnera aphidicola subsp. Acyrthosiphon pisum (strain APS) GN=pheA PE=4 SV=1 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query241
225447035 395 PREDICTED: arogenate dehydratase/prephen 0.954 0.582 0.804 1e-105
297739158 418 unnamed protein product [Vitis vinifera] 0.954 0.550 0.804 1e-105
449468368 388 PREDICTED: arogenate dehydratase/prephen 0.958 0.595 0.766 1e-101
449522402 388 PREDICTED: arogenate dehydratase/prephen 0.958 0.595 0.766 1e-101
255577573 373 prephenate dehydratase, putative [Ricinu 0.954 0.616 0.778 1e-100
357453373 375 Arogenate dehydratase/prephenate dehydra 0.966 0.621 0.707 2e-93
148909434 402 unknown [Picea sitchensis] 0.966 0.579 0.676 7e-92
356543698 384 PREDICTED: arogenate dehydratase/prephen 0.966 0.606 0.733 2e-91
224113661 400 arogenate/prephenate dehydratase [Populu 0.954 0.575 0.678 2e-90
449479475 396 PREDICTED: arogenate dehydratase/prephen 0.941 0.573 0.691 6e-90
>gi|225447035|ref|XP_002269463.1| PREDICTED: arogenate dehydratase/prephenate dehydratase 1, chloroplastic [Vitis vinifera] Back     alignment and taxonomy information
 Score =  387 bits (994), Expect = e-105,   Method: Compositional matrix adjust.
 Identities = 185/230 (80%), Positives = 211/230 (91%)

Query: 4   ISVTPNDGTKVRISFKGSPGSFTEDAALKAYPNCETIPCDEFEEAFKAVELWLAEKAILP 63
           IS  P DGTKVRIS+KG PG+++EDAALKAYP+CET+PCDEFE+AFKAVELWLAEKA+LP
Sbjct: 99  ISAAPKDGTKVRISYKGVPGAYSEDAALKAYPHCETVPCDEFEDAFKAVELWLAEKAVLP 158

Query: 64  IENSSGGSIHHNYDLLLRHRLHIVGEVQFVANFCLLALPGIREEKLKCVLSHPQALASSD 123
           IENS GGSIH NYDLLLRHRLHIVGEVQ   N CLLA+PG+  ++L+ VLSHPQALA SD
Sbjct: 159 IENSLGGSIHRNYDLLLRHRLHIVGEVQLAVNLCLLAIPGVGIDQLRRVLSHPQALAQSD 218

Query: 124 IVQTQLGVARENIDDTASAAQYVASNGLRDAGVVASARAAEIYGLNILADRIQDDPDNIT 183
           I+ ++LGV+REN+DD+A AAQYVAS+GLRDAGVVASARAAEIYGLNILA+RIQDD DNIT
Sbjct: 219 IILSKLGVSRENVDDSAGAAQYVASHGLRDAGVVASARAAEIYGLNILAERIQDDFDNIT 278

Query: 184 RFLVLARDPIMPRTDKPFKTSIVFTLDEGPGVLTKALAVFALREINLTKV 233
           RFLVLARDPI+PRT+K FKTSIVFTL+EGPGVL KALAVFALR+INLTK+
Sbjct: 279 RFLVLARDPIIPRTNKLFKTSIVFTLEEGPGVLFKALAVFALRDINLTKI 328

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|297739158|emb|CBI28809.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|449468368|ref|XP_004151893.1| PREDICTED: arogenate dehydratase/prephenate dehydratase 1, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|449522402|ref|XP_004168215.1| PREDICTED: arogenate dehydratase/prephenate dehydratase 1, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|255577573|ref|XP_002529664.1| prephenate dehydratase, putative [Ricinus communis] gi|223530844|gb|EEF32706.1| prephenate dehydratase, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|357453373|ref|XP_003596963.1| Arogenate dehydratase/prephenate dehydratase [Medicago truncatula] gi|124360522|gb|ABN08532.1| Prephenate dehydratase with ACT region [Medicago truncatula] gi|355486011|gb|AES67214.1| Arogenate dehydratase/prephenate dehydratase [Medicago truncatula] Back     alignment and taxonomy information
>gi|148909434|gb|ABR17815.1| unknown [Picea sitchensis] Back     alignment and taxonomy information
>gi|356543698|ref|XP_003540297.1| PREDICTED: arogenate dehydratase/prephenate dehydratase 1, chloroplastic-like [Glycine max] Back     alignment and taxonomy information
>gi|224113661|ref|XP_002316535.1| arogenate/prephenate dehydratase [Populus trichocarpa] gi|222859600|gb|EEE97147.1| arogenate/prephenate dehydratase [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449479475|ref|XP_004155609.1| PREDICTED: arogenate dehydratase/prephenate dehydratase 1, chloroplastic-like [Cucumis sativus] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query241
TAIR|locus:2027332392 ADT1 "arogenate dehydratase 1" 0.966 0.594 0.648 6.8e-79
TAIR|locus:2199963413 ADT6 "arogenate dehydratase 6" 0.954 0.556 0.625 1.9e-76
TAIR|locus:2042021424 PD1 "prephenate dehydratase 1" 0.966 0.549 0.609 2.1e-75
TAIR|locus:2091127381 ADT2 "arogenate dehydratase 2" 0.954 0.603 0.625 1.1e-73
TAIR|locus:2101630424 ADT4 "arogenate dehydratase 4" 0.966 0.549 0.6 2e-72
TAIR|locus:2162459425 ADT5 "arogenate dehydratase 5" 0.966 0.548 0.604 6.7e-72
TIGR_CMR|DET_0461358 DET_0461 "chorismate mutase/pr 0.896 0.603 0.360 1.3e-31
TIGR_CMR|SPO_3539284 SPO_3539 "prephenate dehydrata 0.933 0.792 0.371 6.9e-31
UNIPROTKB|Q0C4F5278 HNE_0659 "Prephenate dehydrata 0.900 0.780 0.373 3e-30
UNIPROTKB|Q9KU24391 VC_0705 "Chorismate mutase/pre 0.908 0.560 0.348 3.1e-28
TAIR|locus:2027332 ADT1 "arogenate dehydratase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 793 (284.2 bits), Expect = 6.8e-79, P = 6.8e-79
 Identities = 153/236 (64%), Positives = 192/236 (81%)

Query:     1 PLTI-SVTPNDG--TKVRISFKGSPGSFTEDAALKAYPNCETIPCDEFEEAFKAVELWLA 57
             PLT  S+  +DG  +KVRISF+G PG+++E AALKA+PNCET+PC++FE AF+AVELWL 
Sbjct:    90 PLTANSLYSSDGDDSKVRISFQGIPGAYSETAALKAFPNCETVPCEQFEAAFQAVELWLV 149

Query:    58 EKAILPIENSSGGSIHHNYDLLLRHRLHIVGEVQFVANFCLLALPGIREEKLKCVLSHPQ 117
             +KA+LPIENS GGSIH NYDLLLRHRLHIV EV    N CLL +PG+++E +KCVLSHPQ
Sbjct:   150 DKAVLPIENSVGGSIHRNYDLLLRHRLHIVQEVHLPVNHCLLGVPGVKKEDIKCVLSHPQ 209

Query:   118 ALASSDIVQTQLGVARENIDDTASAAQYVASNGLRDAGVVASARAAEIYGLNILADRIQD 177
             AL         LG+ R +  DTA+AAQ V+S+G  D G +AS RAA IYGL+ILA+ IQD
Sbjct:   210 ALDQCVNSLNNLGIQRISAKDTATAAQTVSSSGKIDVGAIASVRAANIYGLDILAENIQD 269

Query:   178 DPDNITRFLVLARDPIMPRTDKPFKTSIVFTLDEGPGVLTKALAVFALREINLTKV 233
             D +N+TRFL+LAR+P++PRTD+P+KTSIVF+L+EGPGVL KALAVFALR INL+K+
Sbjct:   270 DVNNVTRFLILAREPMIPRTDRPYKTSIVFSLEEGPGVLFKALAVFALRSINLSKI 325
GO:0004664 "prephenate dehydratase activity" evidence=IEA;ISS
GO:0008152 "metabolic process" evidence=IEA
GO:0009094 "L-phenylalanine biosynthetic process" evidence=IEA;ISS
GO:0009507 "chloroplast" evidence=ISM;IDA
GO:0016597 "amino acid binding" evidence=IEA
GO:0047769 "arogenate dehydratase activity" evidence=IDA
GO:0010048 "vernalization response" evidence=RCA
GO:0043481 "anthocyanin accumulation in tissues in response to UV light" evidence=RCA
GO:0048440 "carpel development" evidence=RCA
TAIR|locus:2199963 ADT6 "arogenate dehydratase 6" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2042021 PD1 "prephenate dehydratase 1" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2091127 ADT2 "arogenate dehydratase 2" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2101630 ADT4 "arogenate dehydratase 4" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2162459 ADT5 "arogenate dehydratase 5" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TIGR_CMR|DET_0461 DET_0461 "chorismate mutase/prephenate dehydratase" [Dehalococcoides ethenogenes 195 (taxid:243164)] Back     alignment and assigned GO terms
TIGR_CMR|SPO_3539 SPO_3539 "prephenate dehydratase" [Ruegeria pomeroyi DSS-3 (taxid:246200)] Back     alignment and assigned GO terms
UNIPROTKB|Q0C4F5 HNE_0659 "Prephenate dehydratase" [Hyphomonas neptunium ATCC 15444 (taxid:228405)] Back     alignment and assigned GO terms
UNIPROTKB|Q9KU24 VC_0705 "Chorismate mutase/prephenate dehydratase" [Vibrio cholerae O1 biovar El Tor str. N16961 (taxid:243277)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

Prediction LevelEC numberConfidence of Prediction
3rd Layer4.2.10.766
4th Layer4.2.1.510.824

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query241
PLN02317382 PLN02317, PLN02317, arogenate dehydratase 1e-148
COG0077279 COG0077, PheA, Prephenate dehydratase [Amino acid 2e-71
pfam00800181 pfam00800, PDT, Prephenate dehydratase 1e-67
PRK11899279 PRK11899, PRK11899, prephenate dehydratase; Provis 1e-62
PRK11898283 PRK11898, PRK11898, prephenate dehydratase; Provis 2e-56
PRK10622386 PRK10622, pheA, bifunctional chorismate mutase/pre 2e-29
cd0490580 cd04905, ACT_CM-PDT, C-terminal ACT domain of the 1e-09
cd0488075 cd04880, ACT_AAAH-PDT-like, ACT domain of the nonh 8e-08
cd0490474 cd04904, ACT_AAAH, ACT domain of the nonheme iron- 0.001
>gnl|CDD|215181 PLN02317, PLN02317, arogenate dehydratase Back     alignment and domain information 
 Score =  417 bits (1075), Expect = e-148
 Identities = 162/236 (68%), Positives = 203/236 (86%), Gaps = 3/236 (1%)

Query: 1   PLTI---SVTPNDGTKVRISFKGSPGSFTEDAALKAYPNCETIPCDEFEEAFKAVELWLA 57
           PL+I   S +P  G+K+R++++G PG+++E AA KAYPNCE +PC++FE AF+AVELWLA
Sbjct: 79  PLSITDLSPSPMHGSKLRVAYQGVPGAYSEAAARKAYPNCEAVPCEQFEAAFQAVELWLA 138

Query: 58  EKAILPIENSSGGSIHHNYDLLLRHRLHIVGEVQFVANFCLLALPGIREEKLKCVLSHPQ 117
           ++A+LPIENS GGSIH NYDLLLRHRLHIVGEVQ   + CLLALPG+R+E+LK V+SHPQ
Sbjct: 139 DRAVLPIENSLGGSIHRNYDLLLRHRLHIVGEVQLPVHHCLLALPGVRKEELKRVISHPQ 198

Query: 118 ALASSDIVQTQLGVARENIDDTASAAQYVASNGLRDAGVVASARAAEIYGLNILADRIQD 177
           ALA  +   T+LGV RE +DDTA AA+ VA+NGLRD   +ASARAAE+YGL+ILA+ IQD
Sbjct: 199 ALAQCENTLTKLGVVREAVDDTAGAAKMVAANGLRDTAAIASARAAELYGLDILAEGIQD 258

Query: 178 DPDNITRFLVLARDPIMPRTDKPFKTSIVFTLDEGPGVLTKALAVFALREINLTKV 233
           D DN+TRFL+LAR+PI+PRTD+PFKTSIVF+L+EGPGVL KALAVFALR+INLTK+
Sbjct: 259 DSDNVTRFLMLAREPIIPRTDRPFKTSIVFSLEEGPGVLFKALAVFALRDINLTKI 314

Length = 382
>gnl|CDD|223155 COG0077, PheA, Prephenate dehydratase [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|216127 pfam00800, PDT, Prephenate dehydratase Back     alignment and domain information
>gnl|CDD|237014 PRK11899, PRK11899, prephenate dehydratase; Provisional Back     alignment and domain information
>gnl|CDD|237013 PRK11898, PRK11898, prephenate dehydratase; Provisional Back     alignment and domain information
>gnl|CDD|182594 PRK10622, pheA, bifunctional chorismate mutase/prephenate dehydratase; Provisional Back     alignment and domain information
>gnl|CDD|153177 cd04905, ACT_CM-PDT, C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme Back     alignment and domain information
>gnl|CDD|153152 cd04880, ACT_AAAH-PDT-like, ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH) Back     alignment and domain information
>gnl|CDD|153176 cd04904, ACT_AAAH, ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH) Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 241
COG0077279 PheA Prephenate dehydratase [Amino acid transport 100.0
PRK11899279 prephenate dehydratase; Provisional 100.0
PLN02317382 arogenate dehydratase 100.0
PRK10622386 pheA bifunctional chorismate mutase/prephenate deh 100.0
PRK11898283 prephenate dehydratase; Provisional 100.0
KOG2797377 consensus Prephenate dehydratase [Amino acid trans 100.0
PF00800181 PDT: Prephenate dehydratase Caution this is only a 100.0
PRK06034279 hypothetical protein; Provisional 99.44
cd0490474 ACT_AAAH ACT domain of the nonheme iron-dependent, 99.37
cd0493190 ACT_PAH ACT domain of the nonheme iron-dependent a 99.37
cd04930115 ACT_TH ACT domain of the nonheme iron-dependent ar 99.3
cd0492974 ACT_TPH ACT domain of the nonheme iron-dependent a 99.26
cd0488075 ACT_AAAH-PDT-like ACT domain of the nonheme iron-d 99.01
cd0490580 ACT_CM-PDT C-terminal ACT domain of the bifunction 98.86
TIGR01270 464 Trp_5_monoox tryptophan 5-monooxygenase, tetrameri 98.84
PRK08818370 prephenate dehydrogenase; Provisional 97.77
PF0184266 ACT: ACT domain; InterPro: IPR002912 The ACT domai 97.75
TIGR01269 457 Tyr_3_monoox tyrosine 3-monooxygenase, tetrameric. 97.27
cd0488673 ACT_ThrD-II-like C-terminal ACT domain of biodegra 97.12
cd0490866 ACT_Bt0572_1 N-terminal ACT domain of a novel prot 97.04
cd0488265 ACT_Bt0572_2 C-terminal ACT domain of a novel prot 96.91
KOG3820 461 consensus Aromatic amino acid hydroxylase [Amino a 96.72
PRK0673776 acetolactate synthase 1 regulatory subunit; Valida 96.7
PRK1115276 ilvM acetolactate synthase 2 regulatory subunit; P 96.61
cd0488472 ACT_CBS C-terminal ACT domain of the cystathionine 96.54
cd0490969 ACT_PDH-BS C-terminal ACT domain of the monofuncti 96.34
cd0488372 ACT_AcuB C-terminal ACT domain of the Bacillus sub 96.21
cd0488956 ACT_PDH-BS-like C-terminal ACT domain of the monof 96.01
cd0490371 ACT_LSD C-terminal ACT domain of the L-serine dehy 95.87
cd0487971 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-te 95.71
cd0487872 ACT_AHAS N-terminal ACT domain of the Escherichia 95.71
PRK1356284 acetolactate synthase 1 regulatory subunit; Provis 95.67
cd0488568 ACT_ThrD-I Tandem C-terminal ACT domains of threon 95.64
cd0211660 ACT ACT domains are commonly involved in specifica 95.48
PF1329180 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A. 95.46
cd0487472 ACT_Af1403 N-terminal ACT domain of the yet unchar 95.43
cd0490273 ACT_3PGDH-xct C-terminal ACT (regulatory) domain o 95.38
PRK0817896 acetolactate synthase 1 regulatory subunit; Review 95.3
cd0488774 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-te 95.15
PF1371063 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B. 95.09
cd0492672 ACT_ACR_4 C-terminal ACT domain, of a novel type o 95.01
cd0489970 ACT_ACR-UUR-like_2 C-terminal ACT domains of the b 94.84
cd0489572 ACT_ACR_1 ACT domain-containing protein which is c 94.58
cd0488876 ACT_PheB-BS C-terminal ACT domain of a small (~147 94.43
cd0488179 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-termin 94.43
cd0487370 ACT_UUR-ACR-like ACT domains of the bacterial sign 94.4
cd0490685 ACT_ThrD-I_1 First of two tandem C-terminal ACT do 94.3
COG4747142 ACT domain-containing protein [General function pr 94.27
cd0490169 ACT_3PGDH C-terminal ACT (regulatory) domain of D- 94.2
cd0489675 ACT_ACR-like_3 ACT domain-containing protein which 94.11
PRK0019490 hypothetical protein; Validated 93.44
cd0487774 ACT_TyrR N-terminal ACT domain of the TyrR protein 93.31
cd0487574 ACT_F4HF-DF N-terminal ACT domain of formyltetrahy 93.18
PRK04435147 hypothetical protein; Provisional 93.11
cd0487288 ACT_1ZPV ACT domain proteins similar to the yet un 92.89
PRK08198404 threonine dehydratase; Provisional 92.77
cd0487671 ACT_RelA-SpoT ACT domain found C-terminal of the R 92.28
PRK06382406 threonine dehydratase; Provisional 91.95
cd0487075 ACT_PSP_1 CT domains found N-terminal of phosphose 91.89
TIGR01127380 ilvA_1Cterm threonine dehydratase, medium form. A 91.82
cd0490073 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, 91.59
PRK08577136 hypothetical protein; Provisional 91.46
cd0489775 ACT_ACR_3 ACT domain-containing protein which is c 91.07
PRK08526403 threonine dehydratase; Provisional 91.0
PRK06545359 prephenate dehydrogenase; Validated 90.54
PF1374076 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A. 90.45
COG4492150 PheB ACT domain-containing protein [General functi 90.33
PF12974243 Phosphonate-bd: ABC transporter, phosphonate, peri 90.26
PRK08639420 threonine dehydratase; Validated 90.09
cd0486981 ACT_GcvR_2 ACT domains that comprise the Glycine C 90.06
PRK11151305 DNA-binding transcriptional regulator OxyR; Provis 89.44
PF00497225 SBP_bac_3: Bacterial extracellular solute-binding 89.0
TIGR00363258 lipoprotein, YaeC family. This family of putative 88.87
smart00079134 PBPe Eukaryotic homologues of bacterial periplasmi 87.94
PRK15007243 putative ABC transporter arginine-biding protein; 87.71
smart00062219 PBPb Bacterial periplasmic substrate-binding prote 87.33
TIGR01096250 3A0103s03R lysine-arginine-ornithine-binding perip 87.26
TIGR01728288 SsuA_fam ABC transporter, substrate-binding protei 87.24
PRK11589190 gcvR glycine cleavage system transcriptional repre 87.05
COG2716176 GcvR Glycine cleavage system regulatory protein [A 87.01
cd08411200 PBP2_OxyR The C-terminal substrate-binding domain 86.88
cd0489161 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine- 86.72
cd08417200 PBP2_Nitroaromatics_like The C-terminal substrate 86.68
cd0492574 ACT_ACR_2 ACT domain-containing protein which is c 86.55
cd0491375 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine- 85.86
cd08445203 PBP2_BenM_CatM_CatR The C-terminal substrate bindi 85.81
PRK09959 1197 hybrid sensory histidine kinase in two-component r 85.6
cd0492776 ACT_ACR-like_2 Second ACT domain, of a novel type 85.46
cd00134218 PBPb Bacterial periplasmic transport systems use m 85.44
PRK07334403 threonine dehydratase; Provisional 85.28
PRK09959 1197 hybrid sensory histidine kinase in two-component r 84.94
cd08452197 PBP2_AlsR The C-terminal substrate binding domain 84.74
PRK11260266 cystine transporter subunit; Provisional 84.58
TIGR01124 499 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, 84.17
cd0490781 ACT_ThrD-I_2 Second of two tandem C-terminal ACT d 83.77
PRK09495247 glnH glutamine ABC transporter periplasmic protein 83.56
cd08453200 PBP2_IlvR The C-terminal substrate binding domain 83.3
PF13379252 NMT1_2: NMT1-like family; PDB: 2G29_A 3UN6_A 2I4C_ 82.49
cd0493275 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal 82.14
PRK11553314 alkanesulfonate transporter substrate-binding subu 81.74
PRK09508314 leuO leucine transcriptional activator; Reviewed 81.27
COG383090 ACT domain-containing protein [Signal transduction 80.51
cd08412198 PBP2_PAO1_like The C-terminal substrate-binding do 80.5
cd08462200 PBP2_NodD The C-terminal substsrate binding domain 80.49
cd0491467 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimela 80.46
cd0489377 ACT_GcvR_1 ACT domains that comprise the Glycine C 80.38
PF12727193 PBP_like: PBP superfamily domain; InterPro: IPR024 80.23
PRK11917259 bifunctional adhesin/ABC transporter aspartate/glu 80.09
>COG0077 PheA Prephenate dehydratase [Amino acid transport and metabolism] Back     alignment and domain information 
Probab=100.00  E-value=2.8e-82  Score=562.22  Aligned_cols=228  Identities=43%  Similarity=0.634  Sum_probs=215.4

Q ss_pred             ccEEEEeCCCCcHHHHHHHhhCCC-CceeecCCHHHHHHHHHcCCcceEEEeeecccccceeccccccccCCeEEEEEEE
Q 036073           13 KVRISFKGSPGSFTEDAALKAYPN-CETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLRHRLHIVGEVQ   91 (241)
Q Consensus        13 ~~~ia~LGp~GtfS~~Aa~~~~~~-~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~   91 (241)
                      .++|+||||+|||||+||+++|++ .+..||+||+|||++|++|++||||||||||++|+|++|+|+|.+.+|.|+||+.
T Consensus         2 ~~~iayLGP~Gtfs~~Aa~~~f~~~~~~~p~~ti~evf~ave~g~aD~gVVPIENS~eG~V~~tlDlL~~~~l~IvgE~~   81 (279)
T COG0077           2 TMKIAYLGPEGTFSEQAARKLFGSGAELLPCSTIEDVFKAVENGEADYGVVPIENSIEGSVNETLDLLAETDLQIVGEIV   81 (279)
T ss_pred             CceeEEeCCCccHHHHHHHHhccccceeccCCCHHHHHHHHHcCCCceEEEEeeecCCcchHHHHHhhccCCcEEEEEEE
Confidence            589999999999999999999998 7999999999999999999999999999999999999999999999999999999


Q ss_pred             EeeeeeeecCCCCCcCCeeEEEecHHHHHHHHHHHHhc--CCceEeccCHHHHHHHHHhcCCCCeEEecCHhhHHhcCCc
Q 036073           92 FVANFCLLALPGIREEKLKCVLSHPQALASSDIVQTQL--GVARENIDDTASAAQYVASNGLRDAGVVASARAAEIYGLN  169 (241)
Q Consensus        92 l~I~~~L~~~~g~~~~~i~~V~SHpqal~Qc~~fl~~~--~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ygL~  169 (241)
                      +||+|||++++|.++++|++|||||||++||++||+++  ++++++++|||+||+++++.+++..|||||+.||++|||+
T Consensus        82 lpI~h~L~~~~~~~l~~Ik~vySHpqalaQc~~~L~~~~p~~~~~~~~STa~Aak~v~~~~~~~~AAIas~~aA~~YgL~  161 (279)
T COG0077          82 LPIHHCLLVKGGVDLEEIKTVYSHPQALAQCRKFLRAHLPGVEIEYTSSTAEAAKLVAEGPDETVAAIASELAAELYGLD  161 (279)
T ss_pred             EEEEEEEEecCCCChhhCeEEEeCcHHHHHHHHHHHHcCCCceEEEcCCHHHHHHHHHhCCCcCeeEEcCHHHHHHcCcH
Confidence            99999999998889999999999999999999999997  6999999999999999999877899999999999999999


Q ss_pred             eeecccCCCCCCceeEEEEeeCCCCCCCCCCceEEEEEecCCCchHHHHHHHHHHHCCceeeeeeeeccCC
Q 036073          170 ILADRIQDDPDNITRFLVLARDPIMPRTDKPFKTSIVFTLDEGPGVLTKALAVFALREINLTKVFVARVYF  240 (241)
Q Consensus       170 il~~~I~d~~~N~TRF~vl~~~~~~~~~~~~~ktsi~~~~~~~pGaL~~~L~~fa~~~iNLt~IeSRP~~~  240 (241)
                      +|+++|||.++|+|||+||+|+......+...||||+|.++|+||+|+++|++|++||||||||||||++.
T Consensus       162 il~~~I~D~~~N~TRF~vl~r~~~~~~~~~~~kTsl~f~~~n~PGaL~~~L~~Fa~~gINlTkIESRP~k~  232 (279)
T COG0077         162 ILAENIEDEPNNRTRFLVLSRRKPPSVSDGPEKTSLIFSVPNKPGALYKALGVFAKRGINLTKIESRPLKT  232 (279)
T ss_pred             hHhhcccCCCCCeEEEEEEeccCCCCcCCCCceEEEEEEcCCCCchHHHHHHHHHHcCcceeeEeecccCC
Confidence            99999999999999999999862211122457999999999999999999999999999999999999873

>PRK11899 prephenate dehydratase; Provisional Back     alignment and domain information
>PLN02317 arogenate dehydratase Back     alignment and domain information
>PRK10622 pheA bifunctional chorismate mutase/prephenate dehydratase; Provisional Back     alignment and domain information
>PRK11898 prephenate dehydratase; Provisional Back     alignment and domain information
>KOG2797 consensus Prephenate dehydratase [Amino acid transport and metabolism] Back     alignment and domain information
>PF00800 PDT: Prephenate dehydratase Caution this is only a partial structure Back     alignment and domain information
>PRK06034 hypothetical protein; Provisional Back     alignment and domain information
>cd04904 ACT_AAAH ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH) Back     alignment and domain information
>cd04931 ACT_PAH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, phenylalanine hydroxylases (PAH) Back     alignment and domain information
>cd04930 ACT_TH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tyrosine hydroxylases (TH) Back     alignment and domain information
>cd04929 ACT_TPH ACT domain of the nonheme iron-dependent aromatic amino acid hydroxylase, tryptophan hydroxylases (TPH), both peripheral (TPH1) and neuronal (TPH2) enzymes Back     alignment and domain information
>cd04880 ACT_AAAH-PDT-like ACT domain of the nonheme iron-dependent, aromatic amino acid hydroxylases (AAAH) Back     alignment and domain information
>cd04905 ACT_CM-PDT C-terminal ACT domain of the bifunctional chorismate mutase-prephenate dehydratase (CM-PDT) enzyme and the prephenate dehydratase (PDT) enzyme Back     alignment and domain information
>TIGR01270 Trp_5_monoox tryptophan 5-monooxygenase, tetrameric Back     alignment and domain information
>PRK08818 prephenate dehydrogenase; Provisional Back     alignment and domain information
>PF01842 ACT: ACT domain; InterPro: IPR002912 The ACT domain is found in a variety of contexts and is proposed to be a conserved regulatory binding fold Back     alignment and domain information
>TIGR01269 Tyr_3_monoox tyrosine 3-monooxygenase, tetrameric Back     alignment and domain information
>cd04886 ACT_ThrD-II-like C-terminal ACT domain of biodegradative (catabolic) threonine dehydratase II (ThrD-II) and other related ACT domains Back     alignment and domain information
>cd04908 ACT_Bt0572_1 N-terminal ACT domain of a novel protein composed almost entirely of two tandem ACT domains Back     alignment and domain information
>cd04882 ACT_Bt0572_2 C-terminal ACT domain of a novel protein composed of just two ACT domains Back     alignment and domain information
>KOG3820 consensus Aromatic amino acid hydroxylase [Amino acid transport and metabolism] Back     alignment and domain information
>PRK06737 acetolactate synthase 1 regulatory subunit; Validated Back     alignment and domain information
>PRK11152 ilvM acetolactate synthase 2 regulatory subunit; Provisional Back     alignment and domain information
>cd04884 ACT_CBS C-terminal ACT domain of the cystathionine beta-synthase (CBS) domain protein found in Thermotoga maritima, Tm0935, and delta proteobacteria Back     alignment and domain information
>cd04909 ACT_PDH-BS C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) Back     alignment and domain information
>cd04883 ACT_AcuB C-terminal ACT domain of the Bacillus subtilis acetoin utilization protein, AcuB Back     alignment and domain information
>cd04889 ACT_PDH-BS-like C-terminal ACT domain of the monofunctional, NAD dependent, prephenate dehydrogenase (PDH) enzyme that catalyzes the formation of 4-hydroxyphenylpyruvate from prephenate Back     alignment and domain information
>cd04903 ACT_LSD C-terminal ACT domain of the L-serine dehydratase (LSD), iron-sulfur-dependent, beta subunit Back     alignment and domain information
>cd04879 ACT_3PGDH-like ACT_3PGDH-like CD includes the C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH) Back     alignment and domain information
>cd04878 ACT_AHAS N-terminal ACT domain of the Escherichia coli IlvH-like regulatory subunit of acetohydroxyacid synthase (AHAS) Back     alignment and domain information
>PRK13562 acetolactate synthase 1 regulatory subunit; Provisional Back     alignment and domain information
>cd04885 ACT_ThrD-I Tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) Back     alignment and domain information
>cd02116 ACT ACT domains are commonly involved in specifically binding an amino acid or other small ligand leading to regulation of the enzyme Back     alignment and domain information
>PF13291 ACT_4: ACT domain; PDB: 2KO1_B 3IBW_A Back     alignment and domain information
>cd04874 ACT_Af1403 N-terminal ACT domain of the yet uncharacterized, small (~133 a Back     alignment and domain information
>cd04902 ACT_3PGDH-xct C-terminal ACT (regulatory) domain of D-3-phosphoglycerate dehydrogenase (3PGDH) Back     alignment and domain information
>PRK08178 acetolactate synthase 1 regulatory subunit; Reviewed Back     alignment and domain information
>cd04887 ACT_MalLac-Enz ACT_MalLac-Enz CD includes the N-terminal ACT domain of putative NAD-dependent malic enzyme 1, Bacillus subtilis YqkI and related domains Back     alignment and domain information
>PF13710 ACT_5: ACT domain; PDB: 2FGC_A 2PC6_A 2F1F_B Back     alignment and domain information
>cd04926 ACT_ACR_4 C-terminal ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04899 ACT_ACR-UUR-like_2 C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains Back     alignment and domain information
>cd04895 ACT_ACR_1 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04888 ACT_PheB-BS C-terminal ACT domain of a small (~147 a Back     alignment and domain information
>cd04881 ACT_HSDH-Hom ACT_HSDH_Hom CD includes the C-terminal ACT domain of the NAD(P)H-dependent, homoserine dehydrogenase (HSDH) and related domains Back     alignment and domain information
>cd04873 ACT_UUR-ACR-like ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD Back     alignment and domain information
>cd04906 ACT_ThrD-I_1 First of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) Back     alignment and domain information
>COG4747 ACT domain-containing protein [General function prediction only] Back     alignment and domain information
>cd04901 ACT_3PGDH C-terminal ACT (regulatory) domain of D-3-Phosphoglycerate Dehydrogenase (3PGDH) found in fungi and bacteria Back     alignment and domain information
>cd04896 ACT_ACR-like_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>PRK00194 hypothetical protein; Validated Back     alignment and domain information
>cd04877 ACT_TyrR N-terminal ACT domain of the TyrR protein Back     alignment and domain information
>cd04875 ACT_F4HF-DF N-terminal ACT domain of formyltetrahydrofolate deformylase (F4HF-DF; formyltetrahydrofolate hydrolase) Back     alignment and domain information
>PRK04435 hypothetical protein; Provisional Back     alignment and domain information
>cd04872 ACT_1ZPV ACT domain proteins similar to the yet uncharacterized Streptococcus pneumoniae ACT domain protein Back     alignment and domain information
>PRK08198 threonine dehydratase; Provisional Back     alignment and domain information
>cd04876 ACT_RelA-SpoT ACT domain found C-terminal of the RelA/SpoT domains Back     alignment and domain information
>PRK06382 threonine dehydratase; Provisional Back     alignment and domain information
>cd04870 ACT_PSP_1 CT domains found N-terminal of phosphoserine phosphatase (PSP, SerB) Back     alignment and domain information
>TIGR01127 ilvA_1Cterm threonine dehydratase, medium form Back     alignment and domain information
>cd04900 ACT_UUR-like_1 ACT domain family, ACT_UUR-like_1, includes the first of two C-terminal ACT domains of the bacterial signal-transducing uridylyltransferase /uridylyl-removing (UUR) enzyme, GlnD and related domains Back     alignment and domain information
>PRK08577 hypothetical protein; Provisional Back     alignment and domain information
>cd04897 ACT_ACR_3 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>PRK08526 threonine dehydratase; Provisional Back     alignment and domain information
>PRK06545 prephenate dehydrogenase; Validated Back     alignment and domain information
>PF13740 ACT_6: ACT domain; PDB: 1ZPV_A 3P96_A 1U8S_A Back     alignment and domain information
>COG4492 PheB ACT domain-containing protein [General function prediction only] Back     alignment and domain information
>PF12974 Phosphonate-bd: ABC transporter, phosphonate, periplasmic substrate-binding protein ; PDB: 3N5L_B 3QUJ_C 3P7I_A 3QK6_A 3S4U_A Back     alignment and domain information
>PRK08639 threonine dehydratase; Validated Back     alignment and domain information
>cd04869 ACT_GcvR_2 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains Back     alignment and domain information
>PRK11151 DNA-binding transcriptional regulator OxyR; Provisional Back     alignment and domain information
>PF00497 SBP_bac_3: Bacterial extracellular solute-binding proteins, family 3; InterPro: IPR001638 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane Back     alignment and domain information
>TIGR00363 lipoprotein, YaeC family Back     alignment and domain information
>smart00079 PBPe Eukaryotic homologues of bacterial periplasmic substrate binding proteins Back     alignment and domain information
>PRK15007 putative ABC transporter arginine-biding protein; Provisional Back     alignment and domain information
>smart00062 PBPb Bacterial periplasmic substrate-binding proteins Back     alignment and domain information
>TIGR01096 3A0103s03R lysine-arginine-ornithine-binding periplasmic protein Back     alignment and domain information
>TIGR01728 SsuA_fam ABC transporter, substrate-binding protein, aliphatic sulfonates family Back     alignment and domain information
>PRK11589 gcvR glycine cleavage system transcriptional repressor; Provisional Back     alignment and domain information
>COG2716 GcvR Glycine cleavage system regulatory protein [Amino acid transport and metabolism] Back     alignment and domain information
>cd08411 PBP2_OxyR The C-terminal substrate-binding domain of the LysR-type transcriptional regulator OxyR, a member of the type 2 periplasmic binding fold protein superfamily Back     alignment and domain information
>cd04891 ACT_AK-LysC-DapG-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII and related proteins Back     alignment and domain information
>cd08417 PBP2_Nitroaromatics_like The C-terminal substrate binding domain of LysR-type transcriptional regulators that involved in the catabolism of nitroaromatic/naphthalene compounds and that of related regulators; contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd04925 ACT_ACR_2 ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd04913 ACT_AKii-LysC-BS-like_1 ACT domains of the lysine-sensitive aspartokinase isoenzyme AKII of Bacillus subtilis (BS) strain 168 and related proteins Back     alignment and domain information
>cd08445 PBP2_BenM_CatM_CatR The C-terminal substrate binding domain of LysR-type transcriptional regulators involved in benzoate catabolism; contains the type 2 periplasmic binding fold Back     alignment and domain information
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional Back     alignment and domain information
>cd04927 ACT_ACR-like_2 Second ACT domain, of a novel type of ACT domain-containing protein which is composed almost entirely of four ACT domain repeats (the "ACR" protein) Back     alignment and domain information
>cd00134 PBPb Bacterial periplasmic transport systems use membrane-bound complexes and substrate-bound, membrane-associated, periplasmic binding proteins (PBPs) to transport a wide variety of substrates, such as, amino acids, peptides, sugars, vitamins and inorganic ions Back     alignment and domain information
>PRK07334 threonine dehydratase; Provisional Back     alignment and domain information
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional Back     alignment and domain information
>cd08452 PBP2_AlsR The C-terminal substrate binding domain of LysR-type trnascriptional regulator AlsR, which regulates acetoin formation under stationary phase growth conditions; contains the type 2 periplasmic binding fold Back     alignment and domain information
>PRK11260 cystine transporter subunit; Provisional Back     alignment and domain information
>TIGR01124 ilvA_2Cterm threonine ammonia-lyase, biosynthetic, long form Back     alignment and domain information
>cd04907 ACT_ThrD-I_2 Second of two tandem C-terminal ACT domains of threonine dehydratase I (ThrD-I; L-threonine hydrolyase) Back     alignment and domain information
>PRK09495 glnH glutamine ABC transporter periplasmic protein; Reviewed Back     alignment and domain information
>cd08453 PBP2_IlvR The C-terminal substrate binding domain of LysR-type transcriptional regulator, IlvR, involved in the biosynthesis of isoleucine, leucine and valine; contains type 2 periplasmic binding fold Back     alignment and domain information
>PF13379 NMT1_2: NMT1-like family; PDB: 2G29_A 3UN6_A 2I4C_A 2I49_A 2I4B_A 2I48_A 3QSL_A Back     alignment and domain information
>cd04932 ACT_AKiii-LysC-EC_1 ACT domains located C-terminal to the catalytic domain of the lysine-sensitive aspartokinase isoenzyme AKIII Back     alignment and domain information
>PRK11553 alkanesulfonate transporter substrate-binding subunit; Provisional Back     alignment and domain information
>PRK09508 leuO leucine transcriptional activator; Reviewed Back     alignment and domain information
>COG3830 ACT domain-containing protein [Signal transduction mechanisms] Back     alignment and domain information
>cd08412 PBP2_PAO1_like The C-terminal substrate-binding domain of putative LysR-type transcriptional regulator PAO1-like, a member of the type 2 periplasmic binding fold protein superfamily Back     alignment and domain information
>cd08462 PBP2_NodD The C-terminal substsrate binding domain of NodD family of LysR-type transcriptional regulators that regulates the expression of nodulation (nod) genes; contains the type 2 periplasmic binding fold Back     alignment and domain information
>cd04914 ACT_AKi-DapG-BS_1 ACT domains of the diaminopimelate-sensitive aspartokinase (AK) isoenzyme AKI Back     alignment and domain information
>cd04893 ACT_GcvR_1 ACT domains that comprise the Glycine Cleavage System Transcriptional Repressor (GcvR) protein, and other related domains Back     alignment and domain information
>PF12727 PBP_like: PBP superfamily domain; InterPro: IPR024370 This entry represents members of the periplasmic binding domain superfamily [] Back     alignment and domain information
>PRK11917 bifunctional adhesin/ABC transporter aspartate/glutamate-binding protein; Reviewed Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query241
2qmx_B283 The Crystal Structure Of L-Phe Inhibited Prephenate 2e-39
3mwb_A313 The Crystal Structure Of Prephenate Dehydratase In 3e-21
2qmw_A267 The Crystal Structure Of The Prephenate Dehydratase 4e-10
>pdb|2QMX|B Chain B, The Crystal Structure Of L-Phe Inhibited Prephenate Dehydratase From Chlorobium Tepidum Tls Length = 283 Back     alignment and structure 
Iteration: 1

 Score =  159 bits (401), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 98/234 (41%), Positives = 133/234 (56%), Gaps = 13/234 (5%)
Query: 9   NDGTKVRISFKGSPGSFTEDAALKAYPNCETIPCDEFEEAFKAVELWLAEKAILPIENSS 68
           N  T   I+++G PG+++E AAL+     E +PC+ F++ F AV    A+ A++PIENS 
Sbjct: 2   NAXTNWLIAYQGEPGAYSEIAALRF---GEPLPCESFDDVFSAVTEQKADYAVIPIENSL 58
Query: 69  GGSIHHNYDLLLRHRLHIVGEVQFVANFCLLALPGIREEKLKCVLSHPQALAS-SDIVQT 127
           GGSIH NYDLLLR  + I+ E       CLL LPG   E      SHPQAL    +   T
Sbjct: 59  GGSIHQNYDLLLRRPVVILAETFVKVEHCLLGLPGASVETATKAXSHPQALVQCHNFFAT 118
Query: 128 QLGVARENIDDTASAAQYVASNGLRDAGVVASARAAEIYGLNILADRIQDDPDNITRFLV 187
              +  E   DTA +A+ VA +  + A  +AS RA E+YGL+IL + + D+  NITRF  
Sbjct: 119 HPQIRAEAAYDTAGSAKXVAESRDKSALAIASKRAGELYGLDILKENLADEEWNITRFFC 178
Query: 188 LARD--------PIMPRTDKPFKTSIVFTLDEGPGVLTKALAVFALREINLTKV 233
           +A +         + P   +  KTSIVF L    G L +ALA FALR I+LTK+
Sbjct: 179 IAHENNPDISHLKVRPDVARQ-KTSIVFALPNEQGSLFRALATFALRGIDLTKI 231
>pdb|3MWB|A Chain A, The Crystal Structure Of Prephenate Dehydratase In Complex With L-Phe From Arthrobacter Aurescens To 2.0a Length = 313 Back     alignment and structure
>pdb|2QMW|A Chain A, The Crystal Structure Of The Prephenate Dehydratase (Pdt) From Staphylococcus Aureus Subsp. Aureus Mu50 Length = 267 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query241
2qmx_A283 Prephenate dehydratase; APC86053, L-Phe inhibition 1e-100
3mwb_A313 Prephenate dehydratase; L-Phe, PSI, MCSG, structur 1e-86
2qmw_A267 PDT, prephenate dehydratase; APC85812, prephenate 1e-84
3luy_A329 Probable chorismate mutase; structural genomics, A 2e-77
1phz_A 429 Protein (phenylalanine hydroxylase); aromatic amin 1e-14
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 1e-04
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls} Length = 283 Back     alignment and structure
 Score =  292 bits (750), Expect = e-100
 Identities = 97/232 (41%), Positives = 131/232 (56%), Gaps = 11/232 (4%)

Query: 9   NDGTKVRISFKGSPGSFTEDAALKAYPNCETIPCDEFEEAFKAVELWLAEKAILPIENSS 68
           N  T   I+++G PG+++E AAL+     E +PC+ F++ F AV    A+ A++PIENS 
Sbjct: 2   NAMTNWLIAYQGEPGAYSEIAALRF---GEPLPCESFDDVFSAVTEQKADYAVIPIENSL 58

Query: 69  GGSIHHNYDLLLRHRLHIVGEVQFVANFCLLALPGIREEKLKCVLSHPQALA-SSDIVQT 127
           GGSIH NYDLLLR  + I+ E       CLL LPG   E     +SHPQAL    +   T
Sbjct: 59  GGSIHQNYDLLLRRPVVILAETFVKVEHCLLGLPGASVETATKAMSHPQALVQCHNFFAT 118

Query: 128 QLGVARENIDDTASAAQYVASNGLRDAGVVASARAAEIYGLNILADRIQDDPDNITRFLV 187
              +  E   DTA +A+ VA +  + A  +AS RA E+YGL+IL + + D+  NITRF  
Sbjct: 119 HPQIRAEAAYDTAGSAKMVAESRDKSALAIASKRAGELYGLDILKENLADEEWNITRFFC 178

Query: 188 LARDPIMPRTDKPF-------KTSIVFTLDEGPGVLTKALAVFALREINLTK 232
           +A +     +           KTSIVF L    G L +ALA FALR I+LTK
Sbjct: 179 IAHENNPDISHLKVRPDVARQKTSIVFALPNEQGSLFRALATFALRGIDLTK 230
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens} Length = 313 Back     alignment and structure
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3 Length = 267 Back     alignment and structure
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis} Length = 329 Back     alignment and structure
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A Length = 429 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query241
2qmx_A283 Prephenate dehydratase; APC86053, L-Phe inhibition 100.0
3mwb_A313 Prephenate dehydratase; L-Phe, PSI, MCSG, structur 100.0
2qmw_A267 PDT, prephenate dehydratase; APC85812, prephenate 100.0
3luy_A329 Probable chorismate mutase; structural genomics, A 100.0
1phz_A 429 Protein (phenylalanine hydroxylase); aromatic amin 99.15
1wdn_A226 GLNBP, glutamine binding protein; closed form, com 96.29
2ko1_A88 CTR148A, GTP pyrophosphokinase; homodimer, alpha+b 96.14
1zpv_A91 ACT domain protein; structural genomics, PSI, prot 95.77
3h7m_A234 Sensor protein; histidine kinase sensor domain, ki 95.57
4f3p_A249 Glutamine-binding periplasmic protein; ssgcid, str 95.43
3mpk_A267 Virulence sensor protein BVGS; venus flytrap, sens 95.28
3k4u_A245 Binding component of ABC transporter; structural g 95.26
1xt8_A292 Putative amino-acid transporter periplasmic solut 95.19
3kzg_A237 Arginine 3RD transport system periplasmic binding 95.14
2fgc_A 193 Acetolactate synthase, small subunit; regulatory s 94.87
3del_B242 Arginine binding protein; alpha and beta protein ( 94.41
3tql_A227 Arginine-binding protein; transport and binding pr 93.5
2f06_A144 Conserved hypothetical protein; structural genomic 93.3
3qax_A268 Probable ABC transporter arginine-binding protein; 93.28
4i62_A269 Amino acid ABC transporter, periplasmic amino ACI 92.49
2y7i_A229 STM4351; arginine-binding protein; HET: ARG; 1.90A 92.32
3i6v_A232 Periplasmic His/Glu/Gln/Arg/opine family-binding; 92.06
2qpq_A301 Protein BUG27; alpha/beta domain, venus flytrap, t 92.01
2yln_A283 Putative ABC transporter, periplasmic binding Pro 91.88
1u8s_A192 Glycine cleavage system transcriptional repressor, 91.85
2yjp_A291 Putative ABC transporter, periplasmic binding Pro 91.57
4dz1_A259 DALS D-alanine transporter; D-alanine binding, per 91.4
2pyy_A228 Ionotropic glutamate receptor bacterial homologue; 91.38
3hv1_A268 Polar amino acid ABC uptake transporter substrate 91.21
2vha_A287 Periplasmic binding transport protein; periplasmic 91.15
3kbr_A239 Cyclohexadienyl dehydratase; pseudomonas aeruginos 91.13
2f5x_A312 BUGD; periplasmic binding protein, transport prote 90.94
1ii5_A233 SLR1257 protein; membrane protein; HET: GLU; 1.60A 90.43
4h5g_A243 Amino acid ABC superfamily ATP binding cassette tr 89.81
2v25_A259 Major cell-binding factor; antigen, adhesin, aspar 89.62
1lst_A239 Lysine, arginine, ornithine-binding protein; amino 89.23
2pfz_A301 Putative exported protein; extracytoplasmic solute 88.35
2q88_A257 EHUB, putative ABC transporter amino acid-binding 87.97
4eq9_A246 ABC transporter substrate-binding protein-amino A 87.04
2pvu_A272 ARTJ; basic amino acid binding protein, ABC transp 87.01
2nyi_A195 Unknown protein; protein structure initiative, PSI 86.94
3un6_A341 Hypothetical protein saouhsc_00137; structural gen 86.43
3ksx_A324 Nitrate transport protein; SSUA, alkanesulfonate-b 86.18
2hpg_A327 ABC transporter, periplasmic substrate-binding pro 85.63
2pfy_A301 Putative exported protein; extracytoplasmic solute 85.18
2vpn_A316 Periplasmic substrate binding protein; ectoine, hy 84.58
2pyy_A228 Ionotropic glutamate receptor bacterial homologue; 83.89
1ii5_A233 SLR1257 protein; membrane protein; HET: GLU; 1.60A 82.93
2re1_A 167 Aspartokinase, alpha and beta subunits; structural 81.51
2ozz_A231 Hypothetical protein YHFZ; alpha-beta structure, s 80.66
>2qmx_A Prephenate dehydratase; APC86053, L-Phe inhibition, PDT, CHL tepidum TLS, structural genomics, PSI-2, protein structure initiative; HET: PHE; 2.30A {Chlorobium tepidum tls} Back     alignment and structure
Probab=100.00  E-value=1.4e-81  Score=562.17  Aligned_cols=224  Identities=43%  Similarity=0.622  Sum_probs=213.3

Q ss_pred             CccEEEEeCCCCcHHHHHHHhhCCCCceeecCCHHHHHHHHHcCCcceEEEeeecccccceeccccccccCCeEEEEEEE
Q 036073           12 TKVRISFKGSPGSFTEDAALKAYPNCETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLRHRLHIVGEVQ   91 (241)
Q Consensus        12 ~~~~ia~LGp~GtfS~~Aa~~~~~~~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~   91 (241)
                      .++|||||||+|||||+||+++|   +++||.||+|||++|++|++||||||||||++|+|.+|+|+|.+++++|+||+.
T Consensus         5 ~~~~iaylGp~Gtfs~~Aa~~~f---~~~p~~s~~~vf~aV~~g~~d~gVvPiENS~~G~V~~t~DlL~~~~l~I~gE~~   81 (283)
T 2qmx_A            5 TNWLIAYQGEPGAYSEIAALRFG---EPLPCESFDDVFSAVTEQKADYAVIPIENSLGGSIHQNYDLLLRRPVVILAETF   81 (283)
T ss_dssp             -CCEEEEESCTTSHHHHHHHHHS---EEEEESCHHHHHHHHHTTSCSEEEEEEEESSSCBCHHHHHHHHHSSEEEEEEEE
T ss_pred             CCcEEEEECCCCCHHHHHHHHHh---HhCcCCCHHHHHHHHHCCCCCEEEEeehhcCCCccHHHHHHhhcCCcEEEEEEE
Confidence            35799999999999999999999   899999999999999999999999999999999999999999999999999999


Q ss_pred             EeeeeeeecCCCCCcCCeeEEEecHHHHHHHHHHHHhc-CCceEeccCHHHHHHHHHhcCCCCeEEecCHhhHHhcCCce
Q 036073           92 FVANFCLLALPGIREEKLKCVLSHPQALASSDIVQTQL-GVARENIDDTASAAQYVASNGLRDAGVVASARAAEIYGLNI  170 (241)
Q Consensus        92 l~I~~~L~~~~g~~~~~i~~V~SHpqal~Qc~~fl~~~-~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ygL~i  170 (241)
                      +||+|||++++|.++++|++||||||||+||++||+++ +++.++++|||+||+++++.++++.|||||+.||++|||+|
T Consensus        82 l~I~h~Ll~~~g~~l~~I~~V~SHpqal~QC~~~L~~~p~~~~~~~~sTA~AA~~va~~~~~~~AAIas~~AA~~ygL~i  161 (283)
T 2qmx_A           82 VKVEHCLLGLPGASVETATKAMSHPQALVQCHNFFATHPQIRAEAAYDTAGSAKMVAESRDKSALAIASKRAGELYGLDI  161 (283)
T ss_dssp             EECCCEEEECSSCCTTTCCEEEECHHHHHHTHHHHHHCTTSEEEECSCHHHHHHHHHHTTCTTEEEEECHHHHHHTTCEE
T ss_pred             EeeeeeEecCCCCChhhCCEEEEeHHHHHHHHHHHHHCCCceEEEcCCHHHHHHHHHhCCCCCeEEeCCHHHHHHcCCce
Confidence            99999999999999999999999999999999999997 89999999999999999998778899999999999999999


Q ss_pred             eecccCCCCCCceeEEEEeeCCCC--------CCCCCCceEEEEEecCCCchHHHHHHHHHHHCCceeeeeeeeccC
Q 036073          171 LADRIQDDPDNITRFLVLARDPIM--------PRTDKPFKTSIVFTLDEGPGVLTKALAVFALREINLTKVFVARVY  239 (241)
Q Consensus       171 l~~~I~d~~~N~TRF~vl~~~~~~--------~~~~~~~ktsi~~~~~~~pGaL~~~L~~fa~~~iNLt~IeSRP~~  239 (241)
                      |+++|||.++|+|||+||+|++..        +. .+.+||||+|.++|+||+|+++|++|+++|||||||||||++
T Consensus       162 l~~~I~D~~~N~TRF~vl~~~~~~~~~~~~~~~~-~~~~ktsl~f~~~~~pGaL~~~L~~Fa~~gINLtkIESRP~~  237 (283)
T 2qmx_A          162 LKENLADEEWNITRFFCIAHENNPDISHLKVRPD-VARQKTSIVFALPNEQGSLFRALATFALRGIDLTKIESRPSR  237 (283)
T ss_dssp             EESSCSSCCCCEEEEEEEEETTCCCCTTSSSCCE-EEEEEEEEEEEEECCTTHHHHHHHHHHTTTCCEEEEEEEECS
T ss_pred             ecccCcCCCCCeeeEEEEecCccccccccccCCC-CCCceEEEEEEcCCCCchHHHHHHHHHHcCCCeeEEEeeEcC
Confidence            999999999999999999998654        22 225799999999999999999999999999999999999986
>3mwb_A Prephenate dehydratase; L-Phe, PSI, MCSG, structural genomics, midwest center for ST genomics, protein structure initiative, lyase; HET: MSE PHE; 2.00A {Arthrobacter aurescens} Back     alignment and structure
>2qmw_A PDT, prephenate dehydratase; APC85812, prephenate dehydratase (PDT), staphylococcus aureu aureus MU50, structural genomics, PSI-2; 2.30A {Staphylococcus aureus subsp} SCOP: c.94.1.1 d.58.18.3 Back     alignment and structure
>3luy_A Probable chorismate mutase; structural genomics, APC38059, 3-phenylp PSI-2, protein structure initiative; HET: PPY; 2.00A {Bifidobacterium adolescentis} Back     alignment and structure
>1phz_A Protein (phenylalanine hydroxylase); aromatic amino acid hydroxylase, phosphorylation, intrasteric regulation, allosteric regulation; 2.20A {Rattus norvegicus} SCOP: d.58.18.3 d.178.1.1 PDB: 2phm_A Back     alignment and structure
>1wdn_A GLNBP, glutamine binding protein; closed form, complex, peptide, complex (binding protein/peptide); 1.94A {Escherichia coli} SCOP: c.94.1.1 PDB: 1ggg_A Back     alignment and structure
>2ko1_A CTR148A, GTP pyrophosphokinase; homodimer, alpha+beta, transferase, structural genomics, PSI-2, protein structure initiative; NMR {Chlorobaculum tepidum} PDB: 3ibw_A Back     alignment and structure
>1zpv_A ACT domain protein; structural genomics, PSI, protein structure INIT midwest center for structural genomics, MCSG, unknown funct; 1.90A {Streptococcus pneumoniae} SCOP: d.58.18.7 Back     alignment and structure
>3h7m_A Sensor protein; histidine kinase sensor domain, kinase, phosphoprotein, transferase; 2.40A {Geobacter sulfurreducens} SCOP: c.94.1.0 Back     alignment and structure
>4f3p_A Glutamine-binding periplasmic protein; ssgcid, structural genomics, GLUT seattle structural genomics center for infectious disease; 2.40A {Burkholderia pseudomallei} Back     alignment and structure
>3mpk_A Virulence sensor protein BVGS; venus flytrap, sensor domain, signaling protein; 2.04A {Bordetella pertussis} PDB: 3mpl_A Back     alignment and structure
>3k4u_A Binding component of ABC transporter; structural genomics, protein structure INI NEW YORK structural genomix research consortium, nysgxrc; HET: LYS; 2.62A {Wolinella succinogenes} SCOP: c.94.1.0 Back     alignment and structure
>1xt8_A Putative amino-acid transporter periplasmic solut protein; ABC transport, cysteine uptake; 2.00A {Campylobacter jejuni} SCOP: c.94.1.1 Back     alignment and structure
>3kzg_A Arginine 3RD transport system periplasmic binding protein; arginine transport system, protein structure initiative II(PSI II); 2.06A {Legionella pneumophila subsp} SCOP: c.94.1.0 Back     alignment and structure
>2fgc_A Acetolactate synthase, small subunit; regulatory subunit, structural genomi protein structure initiative; 2.30A {Thermotoga maritima} SCOP: d.58.18.6 d.58.18.6 Back     alignment and structure
>3del_B Arginine binding protein; alpha and beta protein (A/B), periplasmic protein, arginine protein binding, transport protein; 1.92A {Chlamydia trachomatis} SCOP: c.94.1.0 Back     alignment and structure
>3tql_A Arginine-binding protein; transport and binding proteins, transport protein; HET: MSE ARG; 1.59A {Coxiella burnetii} SCOP: c.94.1.0 Back     alignment and structure
>2f06_A Conserved hypothetical protein; structural genomics hypothetical protein, PSI, protein struc initiative; HET: MSE HIS; 2.10A {Bacteroides thetaiotaomicron} SCOP: d.58.18.11 d.58.18.11 Back     alignment and structure
>3qax_A Probable ABC transporter arginine-binding protein; periplasmic, transport PR; HET: ARG; 2.00A {Chlamydophila pneumoniae} PDB: 3g41_A* 3n26_A* Back     alignment and structure
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae} Back     alignment and structure
>2y7i_A STM4351; arginine-binding protein; HET: ARG; 1.90A {Salmonella enterica subsp} Back     alignment and structure
>3i6v_A Periplasmic His/Glu/Gln/Arg/opine family-binding; structural genomics, transporter, PSI-2, protein structure initiative; HET: LYS; 2.00A {Silicibacter pomeroyi} SCOP: c.94.1.0 Back     alignment and structure
>2qpq_A Protein BUG27; alpha/beta domain, venus flytrap, transport protein; HET: CIT; 1.92A {Bordetella pertussis} Back     alignment and structure
>2yln_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-BIND protein; HET: CYS GOL; 1.12A {Neisseria gonorrhoeae} PDB: 3zsf_A Back     alignment and structure
>1u8s_A Glycine cleavage system transcriptional repressor, putative; structural genomics, protein structure initiative (PSI), domain swapping; 2.45A {Vibrio cholerae} SCOP: d.58.18.5 d.58.18.5 Back     alignment and structure
>2yjp_A Putative ABC transporter, periplasmic binding Pro amino acid; transport protein, solute-binding protein; 2.26A {Neisseria gonorrhoeae} Back     alignment and structure
>4dz1_A DALS D-alanine transporter; D-alanine binding, periplasmic, transport protein; 1.90A {Salmonella enterica} PDB: 3r39_A 4f3s_A Back     alignment and structure
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme} Back     alignment and structure
>3hv1_A Polar amino acid ABC uptake transporter substrate binding protein; protein structure initiative II(PSI II), nysgxrc; 1.90A {Streptococcus thermophilus lmg 18311} Back     alignment and structure
>2vha_A Periplasmic binding transport protein; periplasmic binding protein, ligand binding, ultrahigh resolution; HET: GLU; 1.00A {Shigella flexneri} PDB: 2ia4_A* Back     alignment and structure
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa} Back     alignment and structure
>2f5x_A BUGD; periplasmic binding protein, transport protein; 1.72A {Bordetella pertussis tohama I} Back     alignment and structure
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A Back     alignment and structure
>4h5g_A Amino acid ABC superfamily ATP binding cassette transporter, binding protein; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; HET: ARG; 1.78A {Streptococcus pneumoniae} PDB: 4h5f_A* Back     alignment and structure
>2v25_A Major cell-binding factor; antigen, adhesin, aspartate, glutamate, transport, ABC transport, virulence factor, receptor; 1.49A {Campylobacter jejuni} Back     alignment and structure
>1lst_A Lysine, arginine, ornithine-binding protein; amino-acid binding protein; HET: LYS; 1.80A {Salmonella typhimurium} SCOP: c.94.1.1 PDB: 2lao_A 1lag_E* 1lah_E 1laf_E 1hsl_A* 1hpb_P* Back     alignment and structure
>2pfz_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.80A {Bordetella pertussis tohama I} Back     alignment and structure
>2q88_A EHUB, putative ABC transporter amino acid-binding prote; substrate-binding protein, compatible solues, ABC-transporte osmoprotection; HET: 4CS; 1.90A {Sinorhizobium meliloti} PDB: 2q89_A* Back     alignment and structure
>4eq9_A ABC transporter substrate-binding protein-amino A transport; structural genomics, niaid; HET: GSH; 1.40A {Streptococcus pneumoniae} Back     alignment and structure
>2pvu_A ARTJ; basic amino acid binding protein, ABC transport system, THER bacterium, transport protein; HET: LYS; 1.79A {Geobacillus stearothermophilus} PDB: 2q2a_A* 2q2c_A* Back     alignment and structure
>2nyi_A Unknown protein; protein structure initiative, PSI, center for eukaryotic structural genomics, CESG, structural genomics; 1.80A {Galdieria sulphuraria} Back     alignment and structure
>3un6_A Hypothetical protein saouhsc_00137; structural genomics, center for structural genomics of infec diseases, csgid; 2.01A {Staphylococcus aureus subsp} Back     alignment and structure
>3ksx_A Nitrate transport protein; SSUA, alkanesulfonate-binding protein, periplasmic-binding P transport protein; HET: MPO; 1.70A {Xanthomonas axonopodis PV} PDB: 3e4r_A* 3ksj_A* Back     alignment and structure
>2hpg_A ABC transporter, periplasmic substrate-binding protein; periplasmic binding protein, thermophilic proteins, trap- transport; HET: MSE; 1.90A {Thermotoga maritima} Back     alignment and structure
>2pfy_A Putative exported protein; extracytoplasmic solute receptor, tripartite ATP independent periplasmic transport, pyroglutamic acid; 1.95A {Bordetella pertussis tohama I} Back     alignment and structure
>2vpn_A Periplasmic substrate binding protein; ectoine, hydroxyectoine, trap-transporter, periplasmic binding protein, transport; HET: 4CS; 1.55A {Halomonas elongata} PDB: 2vpo_A* 3gyy_A Back     alignment and structure
>2pyy_A Ionotropic glutamate receptor bacterial homologue; GLUR0 ligand binding domain, transport protein; HET: GLU; 2.10A {Nostoc punctiforme} Back     alignment and structure
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A Back     alignment and structure
>2re1_A Aspartokinase, alpha and beta subunits; structural genomics, protein structure initiative, midwest center for structural genomics; 2.75A {Neisseria meningitidis MC58} Back     alignment and structure
>2ozz_A Hypothetical protein YHFZ; alpha-beta structure, structural genomics, PSI-2, protein structure initiative; 2.30A {Shigella flexneri 2A} SCOP: c.94.1.1 Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 241
d2qmwa1184 c.94.1.1 (A:1-184) Prephenate dehydratase {Staphyl 5e-45
d1phza197 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-t 2e-08
d2qmwa280 d.58.18.3 (A:185-264) Prephenate dehydratase C-ter 7e-05
>d2qmwa1 c.94.1.1 (A:1-184) Prephenate dehydratase {Staphylococcus aureus [TaxId: 1280]} Length = 184 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Phosphate binding protein-like
domain: Prephenate dehydratase
species: Staphylococcus aureus [TaxId: 1280]

 Score =  147 bits (371), Expect = 5e-45
 Identities = 44/185 (23%), Positives = 74/185 (40%), Gaps = 8/185 (4%)

Query: 15  RISFKGSPGSFTEDAALKAYPNCET--IPCDEFEEAFKAVELWLAEKAILPIENSSGGSI 72
           ++ + G  G+F+  A  + +   E    P     E  KAV        ++PIENS  G+I
Sbjct: 2   QLYYLGPKGTFSYLACRQYFSENEATFQPKSNLFEVIKAVADDDTSIGVVPIENSIEGTI 61

Query: 73  HHNYDLLLRHRLHIVGEVQFVANFCLLALPGIREEKLKCVLSHPQALASSDIVQTQLGVA 132
           +   D L +  +   GE++   NF L          +K V S   A++     QT   + 
Sbjct: 62  NIVADALAQQDVFAHGEIRLDINFALYGNGTDSISDIKKVYSIAPAIS-----QTTNYIH 116

Query: 133 RENIDDTASAAQYVASNGL-RDAGVVASARAAEIYGLNILADRIQDDPDNITRFLVLARD 191
           +   D     +   +   +      +A   + E YG   +   I+D P N+TRFLV+   
Sbjct: 117 QHQFDYDYVDSTIQSLTKIENGVAAIAPLGSGEAYGFTPIDTHIEDYPHNVTRFLVIKNQ 176

Query: 192 PIMPR 196
               +
Sbjct: 177 QQFDQ 181
>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 97 Back     information, alignment and structure
>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]} Length = 80 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query241
d2qmwa1184 Prephenate dehydratase {Staphylococcus aureus [Tax 100.0
d1phza197 Phenylalanine hydroxylase N-terminal domain {Rat ( 99.5
d2qmwa280 Prephenate dehydratase C-terminal domain {Staphylo 99.31
d2f06a171 Hypothetical protein BT0572 {Bacteroides thetaiota 96.97
d2f06a270 Hypothetical protein BT0572 {Bacteroides thetaiota 96.78
d2f1fa176 Acetolactate synthase small subunit, IlvH {Escheri 96.48
d2fgca278 Acetolactate synthase small subunit, IlvH {Thermot 96.34
d2pc6a277 Acetolactate synthase small subunit, IlvH {Nitroso 96.05
d1y7pa277 Hypothetical protein AF1403, N-terminal domain {Ar 95.92
d1wdna_223 Glutamine-binding protein {Escherichia coli [TaxId 95.39
d1xt8a1248 Putative amino-acid transporter CjaA {Campylobacte 95.33
d1ygya378 Phosphoglycerate dehydrogenase, regulatory (C-term 94.58
d1sc6a384 Phosphoglycerate dehydrogenase, regulatory (C-term 93.97
d1u8sa293 putative transcriptional repressor VC2159 {Vibrio 93.6
d1zpva183 UPF0237 protein SP0238 {Streptococcus pneumoniae [ 93.29
d1u8sa186 putative transcriptional repressor VC2159 {Vibrio 92.25
d1xs5a_240 Putative lipoprotein (NlpA family) {Treponema pall 83.58
>d2qmwa1 c.94.1.1 (A:1-184) Prephenate dehydratase {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Phosphate binding protein-like
domain: Prephenate dehydratase
species: Staphylococcus aureus [TaxId: 1280]

Probab=100.00  E-value=3.5e-64  Score=422.73  Aligned_cols=177  Identities=24%  Similarity=0.336  Sum_probs=168.8

Q ss_pred             cEEEEeCCCCcHHHHHHHhhCCC--CceeecCCHHHHHHHHHcCCcceEEEeeecccccceeccccccccCCeEEEEEEE
Q 036073           14 VRISFKGSPGSFTEDAALKAYPN--CETIPCDEFEEAFKAVELWLAEKAILPIENSSGGSIHHNYDLLLRHRLHIVGEVQ   91 (241)
Q Consensus        14 ~~ia~LGp~GtfS~~Aa~~~~~~--~~~~~~~s~~~v~~av~~g~~d~gVvPiENS~~G~V~~t~d~L~~~~l~I~~E~~   91 (241)
                      |||+||||+|||||+||+++|++  .+++||.||+|||++|++|++||||||||||++|+|.+|+|+|.++++.|+||+.
T Consensus         1 mki~yLGp~GtfS~~Aa~~~f~~~~~~~~~~~s~~~v~~av~~~~~d~gvvPiENS~~G~V~~t~D~L~~~~~~I~~E~~   80 (184)
T d2qmwa1           1 MQLYYLGPKGTFSYLACRQYFSENEATFQPKSNLFEVIKAVADDDTSIGVVPIENSIEGTINIVADALAQQDVFAHGEIR   80 (184)
T ss_dssp             CEEEEECSTTSHHHHHHHHHCCTTSSEEEEESSHHHHHHHHHHCSSEEEEEEEESCSSSCSHHHHHHHHTTSSEEEEEEE
T ss_pred             CEEEEeCCCChHHHHHHHHhcccCCceeeecCCHHHHHHHHHcCCCceeEEEeecccccchHHHHHhhhccCceeEeeec
Confidence            79999999999999999999985  5789999999999999999999999999999999999999999999999999999


Q ss_pred             EeeeeeeecCCCCCcCCeeEEEecHHHHHHHHHHHHhcCCceEeccCHHHHHHHHHhcCCCCeEEecCHhhHHhcCCcee
Q 036073           92 FVANFCLLALPGIREEKLKCVLSHPQALASSDIVQTQLGVARENIDDTASAAQYVASNGLRDAGVVASARAAEIYGLNIL  171 (241)
Q Consensus        92 l~I~~~L~~~~g~~~~~i~~V~SHpqal~Qc~~fl~~~~~~~~~~~sTa~Aa~~v~~~~~~~~aAI~s~~aa~~ygL~il  171 (241)
                      +||+|||+++++.++++|++||||||||+||++||+++.++.+.++||++||+.+.    ++.|||+|+.||++|||++|
T Consensus        81 l~I~h~Ll~~~~~~l~~I~~V~SHpqal~QC~~~l~~~~~~~~~~~sta~aa~~~~----~~~aAIas~~aa~~ygL~il  156 (184)
T d2qmwa1          81 LDINFALYGNGTDSISDIKKVYSIAPAISQTTNYIHQHQFDYDYVDSTIQSLTKIE----NGVAAIAPLGSGEAYGFTPI  156 (184)
T ss_dssp             EECCEEEECCSSCCSTTCCEEEECHHHHHHSHHHHHHTTCEEEECSSHHHHHHTCB----TTEEEEEETTTSGGGTCCEE
T ss_pred             ccchhhhcccccccccccceEEEecchHHHHHHHHHhhccchhhhhhHHHHHhhhh----hhhhccccHhHHHHcCChhh
Confidence            99999999999999999999999999999999999999888889999999998653    46899999999999999999


Q ss_pred             ecccCCCCCCceeEEEEeeCCCC
Q 036073          172 ADRIQDDPDNITRFLVLARDPIM  194 (241)
Q Consensus       172 ~~~I~d~~~N~TRF~vl~~~~~~  194 (241)
                      +++|||.++|+|||+||+|++..
T Consensus       157 ~~~I~D~~~N~TRF~vi~~~~~~  179 (184)
T d2qmwa1         157 DTHIEDYPHNVTRFLVIKNQQQF  179 (184)
T ss_dssp             EECCCSCSCCEEEEEEEESCCCC
T ss_pred             hhCCCCCCCCeEeEEEEecCCcC
Confidence            99999999999999999998654
>d1phza1 d.58.18.3 (A:19-115) Phenylalanine hydroxylase N-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure
>d2qmwa2 d.58.18.3 (A:185-264) Prephenate dehydratase C-terminal domain {Staphylococcus aureus [TaxId: 1280]} Back     information, alignment and structure
>d2f06a1 d.58.18.11 (A:71-141) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d2f06a2 d.58.18.11 (A:1-70) Hypothetical protein BT0572 {Bacteroides thetaiotaomicron [TaxId: 818]} Back     information, alignment and structure
>d2f1fa1 d.58.18.6 (A:2-77) Acetolactate synthase small subunit, IlvH {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2fgca2 d.58.18.6 (A:27-104) Acetolactate synthase small subunit, IlvH {Thermotoga maritima [TaxId: 2336]} Back     information, alignment and structure
>d2pc6a2 d.58.18.6 (A:1-77) Acetolactate synthase small subunit, IlvH {Nitrosomonas europaea [TaxId: 915]} Back     information, alignment and structure
>d1y7pa2 d.58.18.12 (A:2-78) Hypothetical protein AF1403, N-terminal domain {Archaeon Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1wdna_ c.94.1.1 (A:) Glutamine-binding protein {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xt8a1 c.94.1.1 (A:10-257) Putative amino-acid transporter CjaA {Campylobacter jejuni [TaxId: 197]} Back     information, alignment and structure
>d1ygya3 d.58.18.1 (A:452-529) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Mycobacterium tuberculosis [TaxId: 1773]} Back     information, alignment and structure
>d1sc6a3 d.58.18.1 (A:327-410) Phosphoglycerate dehydrogenase, regulatory (C-terminal) domain {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1u8sa2 d.58.18.5 (A:88-180) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1zpva1 d.58.18.7 (A:1-83) UPF0237 protein SP0238 {Streptococcus pneumoniae [TaxId: 1313]} Back     information, alignment and structure
>d1u8sa1 d.58.18.5 (A:2-87) putative transcriptional repressor VC2159 {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d1xs5a_ c.94.1.1 (A:) Putative lipoprotein (NlpA family) {Treponema pallidum [TaxId: 160]} Back     information, alignment and structure