Citrus Sinensis ID: 036082

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-----
SRVYLRRNDAGEIDPRGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSIAVQLNLALLANQSAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAVVPKSGASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLPGELLKGKPSLDTNLIAGVPPAEILARFEFLEPLSEATLSDMSGWEIGSGQLGQSITSLVKEASAALYITGCTEMAEVLEVLRETKDECLFEQSCCQSCRVREERSRRECHRFLHHCSLLS
cHHHcccccccccccccccccccEEccccEEEEEccccccccccccccHHHHccccccccEEEEccHHHHHHHHHHHccccccccccHHHHHHHHcccEEEEEEEcccHHHHHHcccccEEEcccccHHHHHHcccccccccccccccccccccHHHHHHHHHHHHcHHHHHHHHccccccccccHHHHHHccccHHHHccccccccccccccccHHHHHHccccccccHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccc
ccEEEcccccccccccccEEEEEEEEccEEEEEcHHHHHHccccccccHHHHHcHHHHccEEEEccHHHHHHHHHHHccccccccccHHHHHHHHcccEEEEEEEcccHHHHHHHcccccEccccccHHHHHHEEcccccHcHHHHccccccccHHHHHHHHHHHHcHHHHHHHHHHHHccccccHHHHHHHHccHHHHccccccccccccccccHHHHHHccEHccccHHHHHHHcccEccccccHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHccccccccccHHHHcHHHHHHHHHHHHHcc
srvylrrndageidprgkicaapyrwgTVVIAYKKskfrkhnlapiedwkdlwrpelagrismvnspreVIGSIAVQLNLALLANQSAHHLKAFGIGDVWVAVGWssdvlpavkhmsnvavvpksgASLWADLWAipaasrletkqiggrvrglsPLIHQWIEFCLQTAralpfkqevipgaspsaLESTLVKLpgellkgkpsldtnliagvppaeILARFefleplseatlsdmsgweigsgqlgQSITSLVKEASAALYITGCTEMAEVLEVLRETKDECLFEQSCCQSCRVREERSRRECHRFLHHCSLLS
srvylrrndageidprgkicaapyrWGTVVIAYkkskfrkhnlapiedwkdlwrPELAGRISMVNSPREVIGSIAVQLNLALLANQSAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAVVPKSGASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLPGELLKGKPSLDTNLIAGVPPAEILARFEFLEPLSEATLSDMSGWEIGSGQLGQSITSLVKEASAALYITGCTEMAEVLEVLRETKDECLFEQSCCQSCRVREERSRREchrflhhcslls
SRVYLRRNDAGEIDPRGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSIAVqlnlallanqsahhlKAFGIGDVWVAVGWSSDVLPAVKHMSNVAVVPKSGASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLPGELLKGKPSLDTNLIAGVPPAEILARFEFLEPLSEATLSDMSGWEIGSGQLGQSITSLVKEASAALYITGCTEMAEVLEVLRETKDECLFEQsccqscrvreersrrechrFLHHCSLLS
*************DPRGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSIAVQLNLALLANQSAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAVVPKSGASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIEFCLQTARALPFKQEVIPG********TLVKLPGELLKGKPSLDTNLIAGVPPAEILARFEFLEPLSEATLSDMSGWEIGSGQLGQSITSLVKEASAALYITGCTEMAEVLEVLRETKDECLFEQSCCQSCRVREER*RRECHRFLHHC****
SRVYLRRNDAGEIDPRGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSIAVQLNLALLANQSAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAVVPKSGASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLPGELLKGKPSLDTNLIAGVPPAEILARFEFLEPLSEATLSDMSGWEIGSGQLGQSI*SLVKEASAALYITGCTEMAEVLEVLRETKDECLFEQSCCQSCRVREERSRRECHRFLHHCSLL*
SRVYLRRNDAGEIDPRGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSIAVQLNLALLANQSAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAVVPKSGASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLPGELLKGKPSLDTNLIAGVPPAEILARFEFLEPLSEATLSDMSGWEIGSGQLGQSITSLVKEASAALYITGCTEMAEVLEVLRETKDECLFEQSCCQ**********RECHRFLHHCSLLS
SRVYLRRNDAGEIDPRGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSIAVQLNLALLANQSAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAVVPKSGASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLPGELLKGKPSLDTNLIAGVPPAEILARFEFLEPLSEATLSDMSGWEIGSGQLGQSITSLVKEASAALYITGCTEMAEVLEVLRETKDECLFEQSCCQSCRVREERSRRECHRFLHHCS*L*
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SRVYLRRNDAGEIDPRGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSIAVQLNLALLANQSAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAVVPKSGASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLPGELLKGKPSLDTNLIAGVPPAEILARFEFLEPLSEATLSDMSGWEIGSGQLGQSITSLVKEASAALYITGCTEMAEVLEVLRETKDECLFEQSCCQSCRVREERSRRECHRFLHHCSLLS
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query315 2.2.26 [Sep-21-2011]
P31133370 Putrescine-binding peripl N/A no 0.403 0.343 0.278 4e-07
P45168360 Spermidine/putrescine-bin yes no 0.542 0.475 0.247 1e-05
P44731350 Spermidine/putrescine-bin no no 0.453 0.408 0.255 1e-05
P41889671 Anaphase-promoting comple yes no 0.631 0.296 0.259 0.0008
>sp|P31133|POTF_ECOLI Putrescine-binding periplasmic protein OS=Escherichia coli (strain K12) GN=potF PE=1 SV=3 Back     alignment and function desciption
 Score = 55.8 bits (133), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/165 (27%), Positives = 73/165 (44%), Gaps = 38/165 (23%)

Query: 14  DPRGKICAAPYRWGTVVIAYKKSKFRK--HNLAPIEDWKDLWRPELAGR-----ISMVNS 66
           DP  K  A PY W T  I Y   K +      AP++ W  + +PE   +     +S +++
Sbjct: 124 DPDNKF-AMPYMWATTGIGYNVDKVKAVLGENAPVDSWDLILKPENLEKLKSCGVSFLDA 182

Query: 67  PREVIGSI-------------------AVQLNLALLAN----QSAHHLKAFGIGDVWVAV 103
           P EV  ++                   A  L L L  N     S+ ++     GD+ VA+
Sbjct: 183 PEEVFATVLNYLGKDPNSTKADDYTGPATDLLLKLRPNIRYFHSSQYINDLANGDICVAI 242

Query: 104 GWSSDVLPA------VKHMSNVAV-VPKSGASLWADLWAIPAASR 141
           GW+ DV  A       K+  NV+  +PK GA  + D++A+PA ++
Sbjct: 243 GWAGDVWQASNRAKEAKNGVNVSFSIPKEGAMAFFDVFAMPADAK 287
Required for the activity of the bacterial periplasmic transport system of putrescine. Polyamine binding protein.
Escherichia coli (strain K12) (taxid: 83333)
>sp|P45168|POTD1_HAEIN Spermidine/putrescine-binding periplasmic protein 1 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=potD-B PE=3 SV=1 Back     alignment and function description
>sp|P44731|POTD2_HAEIN Spermidine/putrescine-binding periplasmic protein 2 OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) GN=potD-A PE=3 SV=2 Back     alignment and function description
>sp|P41889|CUT9_SCHPO Anaphase-promoting complex subunit cut9 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=cut9 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query315
224074577 424 predicted protein [Populus trichocarpa] 0.742 0.551 0.694 4e-98
255557729 507 transporter, putative [Ricinus communis] 0.771 0.479 0.683 2e-97
225427562 553 PREDICTED: uncharacterized protein LOC10 0.752 0.428 0.680 3e-94
147822062 875 hypothetical protein VITISV_021806 [Viti 0.749 0.269 0.671 6e-94
449455671 549 PREDICTED: uncharacterized protein LOC10 0.739 0.424 0.667 3e-93
356559069 552 PREDICTED: uncharacterized protein LOC10 0.806 0.460 0.624 2e-92
357517389 786 RING-H2 finger protein ATL5F [Medicago t 0.803 0.321 0.619 3e-90
356560607 508 PREDICTED: uncharacterized protein LOC10 0.806 0.5 0.610 3e-90
12322546 526 hypothetical protein [Arabidopsis thalia 0.746 0.446 0.622 4e-84
357165613 526 PREDICTED: uncharacterized protein LOC10 0.742 0.444 0.595 7e-84
>gi|224074577|ref|XP_002304393.1| predicted protein [Populus trichocarpa] gi|222841825|gb|EEE79372.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
 Score =  363 bits (933), Expect = 4e-98,   Method: Compositional matrix adjust.
 Identities = 182/262 (69%), Positives = 207/262 (79%), Gaps = 28/262 (10%)

Query: 2   RVYLRRNDAGEIDPRGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRI 61
           +VYLRRN  GEIDP G+I AAPYRWG++VIAYKKSKF++H LAPIEDW DLWRPELAGRI
Sbjct: 124 KVYLRRNHEGEIDPEGEIWAAPYRWGSMVIAYKKSKFQEHKLAPIEDWADLWRPELAGRI 183

Query: 62  SMVNSPREVIGSI----------------------AVQLNLALLANQ-----SAHHLKAF 94
           SMV+SPREV+GS+                      AVQ NLALL  Q     S ++LK F
Sbjct: 184 SMVDSPREVVGSVLKYMGASYNTKNIDLQVPGGKNAVQQNLALLGKQVRLFDSMYYLKTF 243

Query: 95  GIGDVWVAVGWSSDVLPAVKHMSNVAVV-PKSGASLWADLWAIPAASRLETKQIGGRVRG 153
            +GD WVAVGWSSDVLP  K MSNVAVV PKSG SLWADLWAIPAA++LET QIGGR+RG
Sbjct: 244 SMGDAWVAVGWSSDVLPIAKRMSNVAVVVPKSGTSLWADLWAIPAATKLETNQIGGRIRG 303

Query: 154 LSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLPGELLKGKPSLDTNLIAGV 213
            SPLIHQWIEFCLQ ARALPFKQEVIPGA+PSA+E++++++P EL KGKP LDTNLIAGV
Sbjct: 304 PSPLIHQWIEFCLQAARALPFKQEVIPGATPSAIENSVIEVPKELTKGKPKLDTNLIAGV 363

Query: 214 PPAEILARFEFLEPLSEATLSD 235
           PP EIL + EFLEPL +ATLSD
Sbjct: 364 PPPEILTKCEFLEPLPDATLSD 385

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|255557729|ref|XP_002519894.1| transporter, putative [Ricinus communis] gi|223540940|gb|EEF42498.1| transporter, putative [Ricinus communis] Back     alignment and taxonomy information
>gi|225427562|ref|XP_002266662.1| PREDICTED: uncharacterized protein LOC100242504 [Vitis vinifera] gi|296085502|emb|CBI29234.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|147822062|emb|CAN68081.1| hypothetical protein VITISV_021806 [Vitis vinifera] Back     alignment and taxonomy information
>gi|449455671|ref|XP_004145575.1| PREDICTED: uncharacterized protein LOC101211357 [Cucumis sativus] gi|449485058|ref|XP_004157059.1| PREDICTED: uncharacterized protein LOC101230567 [Cucumis sativus] Back     alignment and taxonomy information
>gi|356559069|ref|XP_003547824.1| PREDICTED: uncharacterized protein LOC100781794 [Glycine max] Back     alignment and taxonomy information
>gi|357517389|ref|XP_003628983.1| RING-H2 finger protein ATL5F [Medicago truncatula] gi|355523005|gb|AET03459.1| RING-H2 finger protein ATL5F [Medicago truncatula] Back     alignment and taxonomy information
>gi|356560607|ref|XP_003548582.1| PREDICTED: uncharacterized protein LOC100809061 [Glycine max] Back     alignment and taxonomy information
>gi|12322546|gb|AAG51275.1|AC027135_16 hypothetical protein [Arabidopsis thaliana] Back     alignment and taxonomy information
>gi|357165613|ref|XP_003580439.1| PREDICTED: uncharacterized protein LOC100830894 [Brachypodium distachyon] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query315
TAIR|locus:2206194524 AT1G31410 [Arabidopsis thalian 0.457 0.274 0.693 1.7e-78
TIGR_CMR|BA_1300345 BA_1300 "spermidine/putrescine 0.171 0.156 0.406 7.4e-09
UNIPROTKB|P31133370 potF "putrescine ABC transport 0.142 0.121 0.384 0.00011
TAIR|locus:2206194 AT1G31410 [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 512 (185.3 bits), Expect = 1.7e-78, Sum P(2) = 1.7e-78
 Identities = 102/147 (69%), Positives = 116/147 (78%)

Query:    92 KAFGIGDVWVAVGWSSDVLPAVKHMSNVAV-VPKSGASLWADLWAIPAASRL--ETKQIG 148
             KAF +GDVWV VGWSSDV+P  K MSNV V VPKSGA+LWADLWAIPA S    E +Q G
Sbjct:   334 KAFNVGDVWVTVGWSSDVIPVAKRMSNVTVIVPKSGATLWADLWAIPAVSDSGKEAEQRG 393

Query:   149 GRVRGLSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLPGELLKGKPSLDTN 208
             GRVRG SPLI+QWIEFCLQ AR+LPF +EVIPGASPSAL+  LV  P +  K +  LDTN
Sbjct:   394 GRVRGPSPLINQWIEFCLQPARSLPFTREVIPGASPSALDGPLVTEPEKTKKDRTKLDTN 453

Query:   209 LIAGVPPAEILARFEFLEPLSEATLSD 235
             L+ GVPP EIL++ EFLEPL EATLS+
Sbjct:   454 LVTGVPPPEILSKCEFLEPLPEATLSE 480
GO:0005215 "transporter activity" evidence=IEA
GO:0005634 "nucleus" evidence=ISM
GO:0006810 "transport" evidence=IEA
GO:0009941 "chloroplast envelope" evidence=IDA
TIGR_CMR|BA_1300 BA_1300 "spermidine/putrescine ABC transporter, spermidine/putrescine-binding protein" [Bacillus anthracis str. Ames (taxid:198094)] Back     alignment and assigned GO terms
UNIPROTKB|P31133 potF "putrescine ABC transporter - periplasmic binding protein" [Escherichia coli K-12 (taxid:83333)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query315
pfam13343239 pfam13343, SBP_bac_6, Bacterial extracellular solu 3e-21
COG0687363 COG0687, PotD, Spermidine/putrescine-binding perip 4e-21
PRK10682370 PRK10682, PRK10682, putrescine transporter subunit 2e-08
pfam13416281 pfam13416, SBP_bac_8, Bacterial extracellular solu 2e-07
PRK09501348 PRK09501, potD, spermidine/putrescine ABC transpor 1e-04
pfam13531224 pfam13531, SBP_bac_11, Bacterial extracellular sol 0.002
>gnl|CDD|222057 pfam13343, SBP_bac_6, Bacterial extracellular solute-binding protein Back     alignment and domain information 
 Score = 90.1 bits (224), Expect = 3e-21
 Identities = 41/194 (21%), Positives = 66/194 (34%), Gaps = 40/194 (20%)

Query: 8   NDAGEIDPRGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSP 67
            +AG  DP G     PY  G +VI   K K         + W DL  PE  G+I++    
Sbjct: 37  ENAGLRDPDGYY--YPYGVGPLVILVNKDKL--GGRPVPKSWADLLDPEYKGKIALPGPD 92

Query: 68  REVIGSIAVQL------------------NLALLANQSAHHLKAFGIGDVWVAVGWSSDV 109
            +   ++ + L                  NL       A    + G   V+V   + +++
Sbjct: 93  GDAFNALLLALYKDFGEDGGWKLARNLKKNLHPAQMVKAAGSLSSGEPAVYVLPYFFANM 152

Query: 110 LPAVKHMSNVAVV-PKSGASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIEFCL-- 166
           LP  K   N+ +V P+ GA +      +    + E             L   +I+F L  
Sbjct: 153 LPRKK--KNIKIVWPEDGALVSPIFMLVKKGPKKE-------------LAKPFIDFLLSP 197

Query: 167 QTARALPFKQEVIP 180
           +    L       P
Sbjct: 198 EVQAILAKAGGKFP 211

This family includes bacterial extracellular solute-binding proteins. Length = 239
>gnl|CDD|223759 COG0687, PotD, Spermidine/putrescine-binding periplasmic protein [Amino acid transport and metabolism] Back     alignment and domain information
>gnl|CDD|182645 PRK10682, PRK10682, putrescine transporter subunit: periplasmic-binding component of ABC superfamily; Provisional Back     alignment and domain information
>gnl|CDD|222114 pfam13416, SBP_bac_8, Bacterial extracellular solute-binding protein Back     alignment and domain information
>gnl|CDD|181913 PRK09501, potD, spermidine/putrescine ABC transporter periplasmic substrate-binding protein; Reviewed Back     alignment and domain information
>gnl|CDD|222203 pfam13531, SBP_bac_11, Bacterial extracellular solute-binding protein Back     alignment and domain information

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 315
PRK09501348 potD spermidine/putrescine ABC transporter peripla 100.0
COG0687363 PotD Spermidine/putrescine-binding periplasmic pro 100.0
PRK10682370 putrescine transporter subunit: periplasmic-bindin 99.97
TIGR03261334 phnS2 putative 2-aminoethylphosphonate ABC transpo 99.9
PF13343242 SBP_bac_6: Bacterial extracellular solute-binding 99.88
PRK11622401 hypothetical protein; Provisional 99.86
TIGR01276309 thiB thiamine ABC transporter, periplasmic binding 99.85
TIGR03227367 PhnS 2-aminoethylphosphonate ABC transporter, peri 99.84
TIGR01254304 sfuA ABC transporter periplasmic binding protein, 99.84
PRK11205330 tbpA thiamine transporter substrate binding subuni 99.82
PF13416281 SBP_bac_8: Bacterial extracellular solute-binding 99.78
PRK15046349 2-aminoethylphosphonate ABC transporter substrate- 99.74
COG1840299 AfuA ABC-type Fe3+ transport system, periplasmic c 99.64
COG4143336 TbpA ABC-type thiamine transport system, periplasm 99.63
TIGR03850437 bind_CPR_0540 carbohydrate ABC transporter substra 99.59
TIGR03851450 chitin_NgcE carbohydrate ABC transporter, N-acetyl 99.55
PRK09474396 malE maltose ABC transporter periplasmic protein; 99.46
PRK10974438 glycerol-3-phosphate transporter periplasmic bindi 99.37
TIGR01256216 modA molybdenum ABC transporter, periplasmic molyb 99.36
PF01547315 SBP_bac_1: Bacterial extracellular solute-binding 99.26
TIGR00971315 3a0106s03 sulfate/thiosulfate-binding protein. Thi 99.22
COG1653433 UgpB ABC-type sugar transport system, periplasmic 99.17
COG4134384 ABC-type uncharacterized transport system, peripla 99.15
PRK10852338 thiosulfate transporter subunit; Provisional 99.13
PRK10752329 sulfate transporter subunit; Provisional 99.07
COG2182420 MalE Maltose-binding periplasmic proteins/domains 99.06
PF13531230 SBP_bac_11: Bacterial extracellular solute-binding 98.99
PRK03537188 molybdate ABC transporter periplasmic molybdate-bi 98.9
PRK10677257 modA molybdate transporter periplasmic protein; Pr 98.87
PRK04168334 molybdate ABC transporter periplasmic substrate-bi 98.27
PF02030493 Lipoprotein_8: Hypothetical lipoprotein (MG045 fam 98.06
COG0725258 ModA ABC-type molybdate transport system, periplas 97.87
COG1613348 Sbp ABC-type sulfate transport system, periplasmic 97.68
TIGR03730273 tungstate_WtpA tungstate ABC transporter binding p 96.42
COG4588252 AcfC Accessory colonization factor AcfC, contains 94.62
PRK11063271 metQ DL-methionine transporter substrate-binding s 87.03
COG4150341 CysP ABC-type sulfate transport system, periplasmi 85.99
PF03401274 TctC: Tripartite tricarboxylate transporter family 81.5
>PRK09501 potD spermidine/putrescine ABC transporter periplasmic substrate-binding protein; Reviewed Back     alignment and domain information 
Probab=100.00  E-value=3.4e-33  Score=268.03  Aligned_cols=212  Identities=23%  Similarity=0.367  Sum_probs=179.2

Q ss_pred             ccCCCCcCCCCCeEeeeeeeceEEEEEecccccccCCCCCCChHhhcCcccCCceEeecChHHHhhHH------------
Q 036082            7 RNDAGEIDPRGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSI------------   74 (315)
Q Consensus         7 ~~~~~~~DpdG~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~Gki~~~d~~~~~~g~a------------   74 (315)
                      .+....+|+ |+.|++||.|++++|+||++++++   ++|+||+|||+|+|+|+|++.++..+.+.++            
T Consensus       113 ~~~~~~~~~-~~~y~vP~~~~~~~i~YN~d~v~~---~~~~sw~dL~~p~~~g~i~~~~~~~~~~~~al~~~G~~~~~~~  188 (348)
T PRK09501        113 DMLNKPFDP-NNDYSIPYIWGATAIGVNSDAIDP---KSVTSWADLWKPEYKGSLLLTDDAREVFQMALRKLGYSGNTTD  188 (348)
T ss_pred             HHhcCCCCC-CCceEeeeeccceEEEEcHHHcCC---CCCCCHHHHhCHHHcCCeEEeCCHHHHHHHHHHHcCCCCCCCC
Confidence            333344566 567999999999999999999975   3789999999999999999998877766443            


Q ss_pred             --HHHHHHHHHHhh--------cHHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE-EeCCCceeeeeeEEEeCCCCCc
Q 036082           75 --AVQLNLALLANQ--------SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV-VPKSGASLWADLWAIPAASRLE  143 (315)
Q Consensus        75 --~~~~a~~~L~~~--------~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~-~PkeG~~~~~d~~~I~k~s~~~  143 (315)
                        +++++++.|.++        ++...+.|.+|++++++.|+++.......+.+|++ +|+||+..|+++++|+|+++|+
T Consensus       189 ~~~~~~a~~~l~~l~~~v~~~~~~~~~~~l~~Gev~i~~~w~~~~~~~~~~g~~i~~~~P~eG~~~~~~~~~i~k~a~n~  268 (348)
T PRK09501        189 PKEIEAAYNELKKLMPNVAAFNSDNPANPYMEGEVNLGMIWNGSAFVARQAGTPIDVVWPKEGGIFWMDSLAIPANAKNK  268 (348)
T ss_pred             HHHHHHHHHHHHHhhhhhEEEcCcHHHHHHHcCCEEEEEeehHHHHHHHhcCCCceEEecCCCcceEEEeeeEECCCCCH
Confidence              245666666654        23456889999999999999998888888889999 9999999999999999999999


Q ss_pred             ccccCCCCCCCHHHHHHHHHHHhcHHHHHHHHhhhCCCCCCCchhhhccCCChhhhcCCCCCCcccccCCCcHHHhhccc
Q 036082          144 TKQIGGRVRGLSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLPGELLKGKPSLDTNLIAGVPPAEILARFE  223 (315)
Q Consensus       144 ~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~e~~~~~~P~~~~~a~~~l~~e~~~~~~~~~~~~~~~~p~~~~~~~~~  223 (315)
                      +            +|++||||++|||+|+.+++ ..+|.+|+  .++.+.||+++++++        .+||+.+.+.+++
T Consensus       269 e------------~A~~Fi~~llspe~q~~~~~-~~~~~~~n--~~a~~~l~~~~~~~~--------~~~~~~~~~~~~~  325 (348)
T PRK09501        269 E------------GALKLINFLLRPDVAKQVAE-TIGYPTPN--LAARKLLSPEVANDK--------SLYPDAETIKKGE  325 (348)
T ss_pred             H------------HHHHHHHHHhCHHHHHHHHH-HhCCCChh--HHHHHhCCHHHhcCC--------CcCcCHHHHhccE
Confidence            8            99999999999999999985 67777766  567889999998754        3689999999999


Q ss_pred             cccCCCHHHHHHHHHHHHHhcccC
Q 036082          224 FLEPLSEATLSDMSGWEIGSGQLG  247 (315)
Q Consensus       224 ~~~~l~~~~~~~~~~~~W~~ikag  247 (315)
                      ++.++++. .+.+++ +|++||++
T Consensus       326 ~~~~~~~~-~~~~~~-~w~~~~~~  347 (348)
T PRK09501        326 WQNDVGAA-SSIYEE-YYQKLKAG  347 (348)
T ss_pred             EecCCCHH-HHHHHH-HHHHHhcc
Confidence            99999864 688999 99999975

>COG0687 PotD Spermidine/putrescine-binding periplasmic protein [Amino acid transport and metabolism] Back     alignment and domain information
>PRK10682 putrescine transporter subunit: periplasmic-binding component of ABC superfamily; Provisional Back     alignment and domain information
>TIGR03261 phnS2 putative 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate-binding protein Back     alignment and domain information
>PF13343 SBP_bac_6: Bacterial extracellular solute-binding protein; PDB: 2QRY_D 1XVX_A 1SI1_A 1SI0_A 1Q35_A 1Y9U_A 2OWS_A 2OWT_A 2VP1_A 2VOZ_A Back     alignment and domain information
>PRK11622 hypothetical protein; Provisional Back     alignment and domain information
>TIGR01276 thiB thiamine ABC transporter, periplasmic binding protein Back     alignment and domain information
>TIGR03227 PhnS 2-aminoethylphosphonate ABC transporter, periplasmic 2-aminoethylphosphonate binding protein Back     alignment and domain information
>TIGR01254 sfuA ABC transporter periplasmic binding protein, thiB subfamily Back     alignment and domain information
>PRK11205 tbpA thiamine transporter substrate binding subunit; Provisional Back     alignment and domain information
>PF13416 SBP_bac_8: Bacterial extracellular solute-binding protein; PDB: 2FNC_A 1ELJ_A 3TTM_B 3TTK_C 2W7Y_A 3RPW_A 2GHB_C 2GHA_A 1POY_3 1POT_A Back     alignment and domain information
>PRK15046 2-aminoethylphosphonate ABC transporter substrate-binding protein; Provisional Back     alignment and domain information
>COG1840 AfuA ABC-type Fe3+ transport system, periplasmic component [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG4143 TbpA ABC-type thiamine transport system, periplasmic component [Coenzyme metabolism] Back     alignment and domain information
>TIGR03850 bind_CPR_0540 carbohydrate ABC transporter substrate-binding protein, CPR_0540 family Back     alignment and domain information
>TIGR03851 chitin_NgcE carbohydrate ABC transporter, N-acetylglucosamine/diacetylchitobiose-binding protein Back     alignment and domain information
>PRK09474 malE maltose ABC transporter periplasmic protein; Reviewed Back     alignment and domain information
>PRK10974 glycerol-3-phosphate transporter periplasmic binding protein; Provisional Back     alignment and domain information
>TIGR01256 modA molybdenum ABC transporter, periplasmic molybdate-binding protein Back     alignment and domain information
>PF01547 SBP_bac_1: Bacterial extracellular solute-binding protein; InterPro: IPR006059 Bacterial high affinity transport systems are involved in active transport of solutes across the cytoplasmic membrane Back     alignment and domain information
>TIGR00971 3a0106s03 sulfate/thiosulfate-binding protein Back     alignment and domain information
>COG1653 UgpB ABC-type sugar transport system, periplasmic component [Carbohydrate transport and metabolism] Back     alignment and domain information
>COG4134 ABC-type uncharacterized transport system, periplasmic component [General function prediction only] Back     alignment and domain information
>PRK10852 thiosulfate transporter subunit; Provisional Back     alignment and domain information
>PRK10752 sulfate transporter subunit; Provisional Back     alignment and domain information
>COG2182 MalE Maltose-binding periplasmic proteins/domains [Carbohydrate transport and metabolism] Back     alignment and domain information
>PF13531 SBP_bac_11: Bacterial extracellular solute-binding protein; PDB: 2HXW_B 3FJG_C 3FJM_B 3FJ7_B 3FIR_B 3AXF_C 1WOD_A 1AMF_A 3R26_A 1SBP_A Back     alignment and domain information
>PRK03537 molybdate ABC transporter periplasmic molybdate-binding protein; Provisional Back     alignment and domain information
>PRK10677 modA molybdate transporter periplasmic protein; Provisional Back     alignment and domain information
>PRK04168 molybdate ABC transporter periplasmic substrate-binding protein; Provisional Back     alignment and domain information
>PF02030 Lipoprotein_8: Hypothetical lipoprotein (MG045 family) Back     alignment and domain information
>COG0725 ModA ABC-type molybdate transport system, periplasmic component [Inorganic ion transport and metabolism] Back     alignment and domain information
>COG1613 Sbp ABC-type sulfate transport system, periplasmic component [Inorganic ion transport and metabolism] Back     alignment and domain information
>TIGR03730 tungstate_WtpA tungstate ABC transporter binding protein WtpA Back     alignment and domain information
>COG4588 AcfC Accessory colonization factor AcfC, contains ABC-type periplasmic domain [General function prediction only] Back     alignment and domain information
>PRK11063 metQ DL-methionine transporter substrate-binding subunit; Provisional Back     alignment and domain information
>COG4150 CysP ABC-type sulfate transport system, periplasmic component [Inorganic ion transport and metabolism] Back     alignment and domain information
>PF03401 TctC: Tripartite tricarboxylate transporter family receptor; InterPro: IPR005064 Bordetella pertussis, the causative agent of human whooping cough (pertussis), is an obligate human pathogen with diverse high-affinity transport systems for the assimilation of iron, a biometal that is essential for growth [] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query315
4gl0_A333 Putative SpermidinePUTRESCINE ABC TRANSPORTER FROM 1e-06
3ttl_A340 Crystal Structure Of Apo-Spue Length = 340 2e-06
3ttn_A340 Crystal Structures Of Polyamine Receptors Spud And 5e-06
1a99_A344 Putrescine Receptor (Potf) From E. Coli Length = 34 2e-04
4eqb_A330 1.5 Angstrom Crystal Structure Of SpermidinePUTRESC 2e-04
3ttm_A346 Crystal Structure Of Spud In Complex With Putrescin 3e-04
3ttk_A345 Crystal Structure Of Apo-Spud Length = 345 3e-04
>pdb|4GL0|A Chain A, Putative SpermidinePUTRESCINE ABC TRANSPORTER FROM LISTERIA Monocytogenes Length = 333 Back     alignment and structure 
Iteration: 1

 Score = 50.4 bits (119), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 54/203 (26%), Positives = 81/203 (39%), Gaps = 43/203 (21%)
Query: 20  CAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIG------- 72
            + PY WGT+ I Y K  F   N    + W  L+ PEL  +I +++  REV G       
Sbjct: 108 YSXPYFWGTLGIIYNKEXFPDKNF---DTWNALFDPELKNQILLIDGAREVXGLGLNSLG 164
Query: 73  ------SIAVXXXXXXXXXXXXXXXKAFGIGD----------VWVAVGWSSDVLPAVKHM 116
                 + A                KA  +GD            VAV +S +    +   
Sbjct: 165 YSLNDTNKAHLQAARDKLETXTPNVKAI-VGDEIKLLXADNEAGVAVTFSGEAAEXLSEN 223
Query: 117 SNVA-VVPKSGASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIEFCLQTARALPFK 175
            ++  V+PK G++LW D   IP  +    K + G         H++I F L+   A    
Sbjct: 224 EDLEYVIPKDGSNLWFDNXVIPKTA----KNVDG--------AHKFINFXLKPENA-AIN 270
Query: 176 QEVIPGASPSALESTLVKLPGEL 198
            E +  A+P+A    L  LP E+
Sbjct: 271 AEYVGYATPNAKAVEL--LPKEI 291
>pdb|3TTL|A Chain A, Crystal Structure Of Apo-Spue Length = 340 Back     alignment and structure
>pdb|3TTN|A Chain A, Crystal Structures Of Polyamine Receptors Spud And Spue From Pseudomonas Aeruginosa Length = 340 Back     alignment and structure
>pdb|1A99|A Chain A, Putrescine Receptor (Potf) From E. Coli Length = 344 Back     alignment and structure
>pdb|4EQB|A Chain A, 1.5 Angstrom Crystal Structure Of SpermidinePUTRESCINE ABC Transporter Substrate-Binding Protein From Streptococcus Pneumoniae Strain Canada Mdr_19a In Complex With Calcium And Hepes. Length = 330 Back     alignment and structure
>pdb|3TTM|A Chain A, Crystal Structure Of Spud In Complex With Putrescine Length = 346 Back     alignment and structure
>pdb|3TTK|A Chain A, Crystal Structure Of Apo-Spud Length = 345 Back     alignment and structure

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query315
1pot_A325 POTD, spermidine/putrescine-binding protein; polya 9e-34
4eqb_A330 Spermidine/putrescine ABC superfamily ATP binding 6e-33
2v84_A343 Spermidine/putrescine ABC transporter, periplasmi 1e-31
1a99_A344 POTF, putrescine-binding protein; transport, perip 3e-28
3ttm_A346 Polyamine transport protein; polyamine binding, pu 3e-28
3ttn_A340 Polyamine transport protein; polyamine binding pro 5e-28
4edp_A351 ABC transporter, substrate-binding protein; clostr 6e-27
3pu5_A333 Extracellular solute-binding protein; structural g 6e-26
3rpw_A365 ABC transporter; structural genomics, PSI-biology, 4e-24
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 2e-07
>1pot_A POTD, spermidine/putrescine-binding protein; polyamine transport protein; HET: SPD; 1.80A {Escherichia coli} SCOP: c.94.1.1 PDB: 1poy_1* Length = 325 Back     alignment and structure
 Score =  125 bits (315), Expect = 9e-34
 Identities = 49/238 (20%), Positives = 79/238 (33%), Gaps = 55/238 (23%)

Query: 21  AAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSIAV---- 76
           + PY WG   I              +  W DLW+PE  G + + +  REV   +A+    
Sbjct: 103 SIPYIWGATAIGVNGDAVDP---KSVTSWADLWKPEYKGSLLLTDDAREVFQ-MALRKLG 158

Query: 77  ---------QLNLA--LLANQSAHHLKAFGI---------GDVWVAVGWSSDVLPAVKHM 116
                    ++  A   L      ++ AF           G+V + + W+     A +  
Sbjct: 159 YSGNTTDPKEIEAAYNELKKL-MPNVAAFNSDNPANPYMEGEVNLGMIWNGSAFVARQAG 217

Query: 117 SNVA-VVPKSGASLWADLWAIPA-ASRLETKQIGGRVRGLSPLIHQWIEFCLQTARALPF 174
           + +  V PK G   W D  AIPA A   E                + I F L+   A   
Sbjct: 218 TPIDVVWPKEGGIFWMDSLAIPANAKNKE-------------GALKLINFLLRPDVAKQV 264

Query: 175 KQEVIPGASPSALESTLVKLPGELLKGKPSLDTNLIAGVPPAEILARFEFLEPLSEAT 232
            + +     P+   +    L  E+   K           P AE +   E+   +  A+
Sbjct: 265 AETI---GYPTPNLAARKLLSPEVANDK--------TLYPDAETIKNGEWQNDVGAAS 311
>4eqb_A Spermidine/putrescine ABC superfamily ATP binding transporter, binding protein; structural genomics, niaid; HET: EPE; 1.50A {Streptococcus pneumoniae TCH8431} Length = 330 Back     alignment and structure
>2v84_A Spermidine/putrescine ABC transporter, periplasmi binding protein; polyamine binding, SYPH spermidine, lipoprotein, transport protein; HET: MES; 1.78A {Treponema pallidum} Length = 343 Back     alignment and structure
>1a99_A POTF, putrescine-binding protein; transport, periplasmic putrescine binding protein (POTF); 2.20A {Escherichia coli} SCOP: c.94.1.1 Length = 344 Back     alignment and structure
>3ttm_A Polyamine transport protein; polyamine binding, putrescine; 2.00A {Pseudomonas aeruginosa} PDB: 3ttk_A Length = 346 Back     alignment and structure
>3ttn_A Polyamine transport protein; polyamine binding protein, spermidine; HET: SPD; 2.00A {Pseudomonas aeruginosa} PDB: 3ttl_A* Length = 340 Back     alignment and structure
>4edp_A ABC transporter, substrate-binding protein; clostridium PERF ATCC 13124, center for structural genomics of infectious DI csgid; 1.85A {Clostridium perfringens} Length = 351 Back     alignment and structure
>3pu5_A Extracellular solute-binding protein; structural genomics, PSI-2, protein structure initiative; 2.05A {Bordetella parapertussis} Length = 333 Back     alignment and structure
>3rpw_A ABC transporter; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.65A {Rhodopseudomonas palustris} Length = 365 Back     alignment and structure
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query315
4gl0_A333 LMO0810 protein; structural genomics, IDP05673, sp 100.0
4eqb_A330 Spermidine/putrescine ABC superfamily ATP binding 100.0
3ttm_A346 Polyamine transport protein; polyamine binding, pu 100.0
3ttn_A340 Polyamine transport protein; polyamine binding pro 99.97
1pot_A325 POTD, spermidine/putrescine-binding protein; polya 99.97
1a99_A344 POTF, putrescine-binding protein; transport, perip 99.94
2v84_A343 Spermidine/putrescine ABC transporter, periplasmi 99.93
4i1d_A324 ABC transporter substrate-binding protein; structu 99.92
4euo_A320 ABC transporter, substrate binding protein (polya; 99.91
3rpw_A365 ABC transporter; structural genomics, PSI-biology, 99.91
3pu5_A333 Extracellular solute-binding protein; structural g 99.89
4edp_A351 ABC transporter, substrate-binding protein; clostr 99.85
2qry_A330 Thiamine-binding periplasmic protein; thiamin bind 99.81
3c9h_A355 ABC transporter, substrate binding protein; struct 99.78
3quf_A414 Extracellular solute-binding protein, family 1; st 99.78
3uor_A458 ABC transporter sugar binding protein; ALFA/beta p 99.78
3ob4_A500 Conglutin, maltose ABC transporter periplasmic pro 99.77
2pt1_A334 Iron transport protein; C-clamp, iron-binding prot 99.77
3k01_A412 Acarbose/maltose binding protein GACH; ABC transpo 99.77
1xvx_A312 YFUA; periplasmic iron binding protein, iron bindi 99.76
3e13_X322 Putative iron-uptake ABC transport system, peripla 99.76
1nnf_A309 Iron-utilization periplasmic protein; iron-binding 99.76
1q35_A320 Iron binding protein FBPA; metal binding protein; 99.76
3n94_A475 Fusion protein of maltose-binding periplasmic Pro 99.76
2voz_A346 FUTA2, periplasmic iron-binding protein; ferric bi 99.75
3oo8_A415 ABC transporter binding protein ACBH; class 2 SBP 99.74
4hs7_A420 Bacterial extracellular solute-binding protein, P; 99.73
2gha_A382 Maltose ABC transporter, periplasmic maltose-BIND 99.72
1y9u_A323 Putative iron binding protein; periplasmic binding 99.72
3py7_A 523 Maltose-binding periplasmic protein,paxillin LD1, 99.71
3mq9_A471 Bone marrow stromal antigen 2 fused to maltose-BI 99.71
2zyo_A397 Solute-binding protein; open form, sugar binding p 99.71
3i3v_A405 Probable secreted solute-binding lipoprotein; tran 99.71
3iot_A449 Maltose-binding protein, huntingtin fusion protei; 99.7
4h1g_A 715 Maltose binding protein-cakar3 motor domain fusio; 99.7
1elj_A381 Maltodextrin-binding protein; protein-carbohydrate 99.7
4b3n_A 602 Maltose-binding periplasmic protein, tripartite mo 99.69
3h4z_A 568 Maltose-binding periplasmic protein fused with Al 99.69
1mh3_A421 Maltose binding-A1 homeodomain protein chimera; MA 99.69
4g68_A456 ABC transporter; transport protein; HET: XYS; 1.80 99.68
4hw8_A420 Bacterial extracellular solute-binding protein, P; 99.68
3o3u_N 581 Maltose-binding periplasmic protein, advanced Gly 99.68
2b3f_A400 Glucose-binding protein; protein-carbohydrate comp 99.68
2xz3_A463 Maltose ABC transporter periplasmic protein, ENVE 99.68
3oai_A507 Maltose-binding periplasmic protein, myelin prote; 99.67
4dxb_A 637 RG13, maltose-binding periplasmic protein, beta-la 99.67
2vgq_A477 Maltose-binding periplasmic protein, mitochondrial 99.67
1y4c_A494 Maltose binding protein fused with designed helica 99.66
1hsj_A487 Fusion protein consisting of staphylococcus access 99.66
1r6z_P509 Chimera of maltose-binding periplasmic protein AN 99.66
2xd3_A416 MALX, maltose/maltodextrin-binding protein; solute 99.66
2gh9_A386 Maltose/maltodextrin-binding protein; MBP, maltose 99.65
3h3g_A 539 Fusion protein of maltose-binding periplasmic DOM 99.65
4exk_A487 Maltose-binding periplasmic protein, uncharacteri 99.64
3f5f_A 658 Maltose-binding periplasmic protein, heparan sulfa 99.64
3csg_A461 MBP, maltose-binding protein monobody YS1 fusion, 99.64
3mp6_A522 MBP, SGF29, maltose-binding periplasmic protein, l 99.64
2zxt_A465 Maltose-binding periplasmic protein, linker, MITO 99.63
4aq4_A419 SN-glycerol-3-phosphate-binding periplasmic prote; 99.62
3osr_A 653 Maltose-binding periplasmic protein, green fluore 99.6
1urs_A402 Maltose-binding protein; maltodextrin-binding prot 99.6
2heu_A401 Sugar ABC transporter, sugar-binding protein; peri 99.6
2z8f_A412 Galacto-N-biose/lacto-N-biose I transporter subst 99.59
2uvj_A408 TOGB, ABC type periplasmic sugar-binding protein; 99.59
1eu8_A409 Trehalose/maltose binding protein; protein-carbohy 99.56
3dm0_A 694 Maltose-binding periplasmic protein fused with RAC 99.56
3osq_A661 Maltose-binding periplasmic protein, green fluore 99.56
2w7y_A430 FCSSBP, probable sugar ABC transporter, sugar-bind 99.56
3cg1_A296 UPF0100 protein PF0080; ABC transporter, binding p 99.54
2nvu_B 805 Maltose binding protein/NEDD8-activating enzyme E1 99.54
3thi_A371 Protein (thiaminase I); thiamin degradation, trans 99.51
1sbp_A310 Sulfate-binding protein; 1.70A {Salmonella typhimu 99.48
4gqo_A433 LMO0859 protein; virulence, pathogenesis, vaccine 99.45
3a09_A490 ALGQ1; sugar binding protein, alginate; HET: MAW B 99.37
3omb_A535 Extracellular solute-binding protein, family 1; PS 99.37
3cfx_A296 UPF0100 protein MA_0280; ABC transporter, binding 99.33
3cij_A295 UPF0100 protein AF_0094; archaeal periplasmic bind 99.32
3r26_A237 Molybdate-binding periplasmic protein; protein bin 99.23
3vlv_A502 ALGQ1; sugar binding protein, alginate; HET: MAW L 99.19
3cfz_A292 UPF0100 protein MJ1186; ABC transporter, binding p 99.06
1atg_A231 MODA, periplasmic molybdate-binding protein; tungs 99.02
2hxw_A237 Major antigenic peptide PEB3; periplasmic binding 99.01
3gzg_A253 Molybdate-binding periplasmic protein; permease; m 98.97
3k6v_A354 Solute-binding protein MA_0280; MODA, molybdate, p 98.36
4gd5_A279 Phosphate ABC transporter, phosphate-binding PROT; 96.11
3muq_A237 Uncharacterized conserved protein; structural geno 94.06
3lr1_A236 Tungstate ABC transporter, periplasmic tungstate- 88.54
4ecf_A264 ABC-type phosphate transport system, periplasmic; 87.94
4exl_A265 PBP 1, phosphate-binding protein PSTS 1; center fo 87.5
3kn3_A242 Putative periplasmic protein; alpha-beta structure 86.76
4i62_A269 Amino acid ABC transporter, periplasmic amino ACI 85.18
3kbr_A239 Cyclohexadienyl dehydratase; pseudomonas aeruginos 84.33
1ii5_A233 SLR1257 protein; membrane protein; HET: GLU; 1.60A 80.74
>4gl0_A LMO0810 protein; structural genomics, IDP05673, spermidine, putrescine, ABC transporter, niaid; HET: MSE PGE PG4; 1.92A {Listeria monocytogenes} Back     alignment and structure
Probab=100.00  E-value=4.9e-36  Score=281.77  Aligned_cols=217  Identities=24%  Similarity=0.347  Sum_probs=187.8

Q ss_pred             cccccCCCCcCCCCCeEeeeeeeceEEEEEecccccccCCCCCCChHhhcCcccCCceEeecChHHHhhHH---------
Q 036082            4 YLRRNDAGEIDPRGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSI---------   74 (315)
Q Consensus         4 ~~~~~~~~~~DpdG~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~Gki~~~d~~~~~~g~a---------   74 (315)
                      +.+.+....+|+ |+.|++||.+++++|+||++++++   .+|+||+||++|+++|++.+.+...+.++++         
T Consensus        93 ~~~~~~~~~~~~-~~~y~vp~~~~~~~i~yn~~~~~~---~~~~sw~dl~dp~~kg~~~~~~~~~~~~~~a~~~~~~~~~  168 (333)
T 4gl0_A           93 LDPRFMDLSFDD-DNKYSMPYFWGTLGIIYNKEMFPD---KNFDTWNALFDPELKNQILLIDGAREVMGLGLNSLGYSLN  168 (333)
T ss_dssp             BCGGGSSCGGGG-GGSSEEEEEEEEEEEEEETTTCTT---CCTTSGGGGGCGGGTTCEEEESCHHHHHHHHHHHTTCCTT
T ss_pred             CCHHHhhhccCC-CCceEeceeeeeeeeeechhhccc---CCcccHHhhcCHHhhhccccCCcHHHHHHHHHHHHhhccc
Confidence            345556666776 778999999999999999999986   3789999999999999999999988887765         


Q ss_pred             -----HHHHHHHHHHhh--------cHHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE-EeCCCceeeeeeEEEeCCC
Q 036082           75 -----AVQLNLALLANQ--------SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV-VPKSGASLWADLWAIPAAS  140 (315)
Q Consensus        75 -----~~~~a~~~L~~~--------~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~-~PkeG~~~~~d~~~I~k~s  140 (315)
                           ++.++...+.++        +.+..+.|++|+++|+++|+++...+...++++.+ +|++|+.+|+++++|+|+|
T Consensus       169 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ge~~~~~~~~~~~~~~~~~~~~~~~~~p~eG~~~~~~~~~I~k~a  248 (333)
T 4gl0_A          169 DTNKAHLQAARDKLETMTPNVKAIVGDEIKLLMADNEAGVAVTFSGEAAEMLSENEDLEYVIPKDGSNLWFDNMVIPKTA  248 (333)
T ss_dssp             CCCHHHHHHHHHHHHHHGGGEEEEESTTHHHHTSCC-CCEEEEEHHHHHHHHHHCTTEEEECCSSCEEEEEEEEECBTTC
T ss_pred             CCCHHHHHHHHHHHHhhccccceecchhhhhhhhccchheehhhhHHHHHHHhhccccccccCCCCCccccceEEEEcCC
Confidence                 234444554443        45678899999999999999999999999999999 9999999999999999999


Q ss_pred             CCcccccCCCCCCCHHHHHHHHHHHhcHHHHHHHHhhhCCCCCCCchhhhccCCChhhhcCCCCCCcccccCCCcHHHhh
Q 036082          141 RLETKQIGGRVRGLSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLPGELLKGKPSLDTNLIAGVPPAEILA  220 (315)
Q Consensus       141 ~~~~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~e~~~~~~P~~~~~a~~~l~~e~~~~~~~~~~~~~~~~p~~~~~~  220 (315)
                      +|++            +|++|||||+|||+|+.+++ .++|.+|+  ..+...||+++++++        .++|+.+.+.
T Consensus       249 ~n~e------------~A~~fi~fllspe~q~~~~~-~~gy~~~n--~~a~~~l~~~~~~~~--------~~~p~~~~~~  305 (333)
T 4gl0_A          249 KNVD------------GAHKFINFMLKPENAAINAE-YVGYATPN--AKAVELLPKEISSDE--------RFYPDMDELN  305 (333)
T ss_dssp             SCHH------------HHHHHHHHHHSHHHHHHHHH-HHCCBCCB--HHHHHHSCHHHHTCT--------TTSCCGGGGT
T ss_pred             CCHH------------HHHHHHHHhcCHHHHHHHHH-HhCCCCcc--HHHHHhCCHHHHhCc--------ccCCCHHHHh
Confidence            9998            99999999999999999995 67888877  467778999998754        3688999999


Q ss_pred             ccccccCCCHHHHHHHHHHHHHhcccCC
Q 036082          221 RFEFLEPLSEATLSDMSGWEIGSGQLGQ  248 (315)
Q Consensus       221 ~~~~~~~l~~~~~~~~~~~~W~~ikag~  248 (315)
                      +++++.+++++..+.|++ +|++||.++
T Consensus       306 ~~~~~~~~~~~~~~~~~~-~w~~~K~~r  332 (333)
T 4gl0_A          306 NLEVYDNLGKRMLSYYNE-LFLEFKMYR  332 (333)
T ss_dssp             TEECCCCCCHHHHHHHHH-HHHHHHHHC
T ss_pred             hCeehhcCCHHHHHHHHH-HHHHHHhhC
Confidence            999999999999999999 999999865
>4eqb_A Spermidine/putrescine ABC superfamily ATP binding transporter, binding protein; structural genomics, niaid; HET: EPE; 1.50A {Streptococcus pneumoniae TCH8431} Back     alignment and structure
>3ttm_A Polyamine transport protein; polyamine binding, putrescine; 2.00A {Pseudomonas aeruginosa} PDB: 3ttk_A Back     alignment and structure
>3ttn_A Polyamine transport protein; polyamine binding protein, spermidine; HET: SPD; 2.00A {Pseudomonas aeruginosa} PDB: 3ttl_A* Back     alignment and structure
>1pot_A POTD, spermidine/putrescine-binding protein; polyamine transport protein; HET: SPD; 1.80A {Escherichia coli} SCOP: c.94.1.1 PDB: 1poy_1* Back     alignment and structure
>1a99_A POTF, putrescine-binding protein; transport, periplasmic putrescine binding protein (POTF); 2.20A {Escherichia coli} SCOP: c.94.1.1 Back     alignment and structure
>2v84_A Spermidine/putrescine ABC transporter, periplasmi binding protein; polyamine binding, SYPH spermidine, lipoprotein, transport protein; HET: MES; 1.78A {Treponema pallidum} Back     alignment and structure
>4i1d_A ABC transporter substrate-binding protein; structural genomics, PSI-biology; 2.20A {Bradyrhizobium japonicum} Back     alignment and structure
>4euo_A ABC transporter, substrate binding protein (polya; class D of PBP, GABA-binding, transport protein; 1.28A {Agrobacterium tumefaciens} PDB: 4eq7_A Back     alignment and structure
>3rpw_A ABC transporter; structural genomics, PSI-biology, protein structure initiati midwest center for structural genomics, MCSG; HET: MSE; 1.65A {Rhodopseudomonas palustris} Back     alignment and structure
>3pu5_A Extracellular solute-binding protein; structural genomics, PSI-2, protein structure initiative; 2.05A {Bordetella parapertussis} Back     alignment and structure
>4edp_A ABC transporter, substrate-binding protein; clostridium PERF ATCC 13124, center for structural genomics of infectious DI csgid; 1.85A {Clostridium perfringens} Back     alignment and structure
>2qry_A Thiamine-binding periplasmic protein; thiamin binding protein, ABC transporter, transport protein; HET: TPS; 2.25A {Escherichia coli} Back     alignment and structure
>3c9h_A ABC transporter, substrate binding protein; structural genom MCSG, PSI-2, protein structure initiative; HET: CIT; 1.90A {Agrobacterium tumefaciens str} Back     alignment and structure
>3quf_A Extracellular solute-binding protein, family 1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; HET: MSE; 1.70A {Bifidobacterium longum subsp} Back     alignment and structure
>3uor_A ABC transporter sugar binding protein; ALFA/beta protein, periplasmic-binding protein, maltose, SUG binding protein; 2.20A {Xanthomonas axonopodis PV} Back     alignment and structure
>3ob4_A Conglutin, maltose ABC transporter periplasmic protein, ARAH; alpha-amylase inhibitors (AAI), lipid transfer (LT) and SEED (SS) protein family; HET: MLR; 2.71A {Escherichia coli} Back     alignment and structure
>2pt1_A Iron transport protein; C-clamp, iron-binding protein, solute-binding protein, perip binding protein, ABC transporter, metal transport; 2.00A {Synechocystis SP} PDB: 2pt2_A 3f11_A Back     alignment and structure
>3k01_A Acarbose/maltose binding protein GACH; ABC transporter, acarbose-binding protein, transport protein; 1.35A {Streptomyces glaucescens} PDB: 3jzj_A* 3k00_A* 3k02_A* Back     alignment and structure
>1xvx_A YFUA; periplasmic iron binding protein, iron binding protein; 1.53A {Yersinia enterocolitica} SCOP: c.94.1.1 PDB: 1xvy_A* Back     alignment and structure
>3e13_X Putative iron-uptake ABC transport system, periplasmic iron-binding protein; beta sheet surrounded by alpha helices; 1.60A {Campylobacter jejuni} SCOP: c.94.1.1 PDB: 1y4t_A Back     alignment and structure
>1nnf_A Iron-utilization periplasmic protein; iron-binding protein, EDTA-Fe-protein complex, metal binding protein; HET: EDT; 1.10A {Haemophilus influenzae} SCOP: c.94.1.1 PDB: 1mrp_A 1d9v_A 3od7_A 3odb_A 1qvs_A 2o6a_A 2o68_A 3kn8_A 3kn7_A 2o69_A 1qw0_A 1o7t_A* 1xc1_A* 1r1n_A* 1d9y_A Back     alignment and structure
>1q35_A Iron binding protein FBPA; metal binding protein; 1.20A {Mannheimia haemolytica} SCOP: c.94.1.1 PDB: 1si0_A 1si1_A Back     alignment and structure
>3n94_A Fusion protein of maltose-binding periplasmic Pro pituitary adenylate cyclase 1 receptor-short...; G-protein coupled receptor; HET: MAL; 1.80A {Escherichia coli} PDB: 3ehs_A* 3ehu_A* 3eht_A* 3n93_A* 3n95_A* 3n96_A* Back     alignment and structure
>2voz_A FUTA2, periplasmic iron-binding protein; ferric binding protein, metal-binding protein, TAT; 1.70A {Synechocystis SP} PDB: 2vp1_A* Back     alignment and structure
>3oo8_A ABC transporter binding protein ACBH; class 2 SBP fold, ABC transporter extracellular solute bindi protein, D-galactose binding; 1.60A {Actinoplanes} PDB: 3oo6_A* 3oo7_A 3oo9_A 3ooa_A Back     alignment and structure
>4hs7_A Bacterial extracellular solute-binding protein, P; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: P33; 2.60A {Staphylococcus aureus subsp} Back     alignment and structure
>2gha_A Maltose ABC transporter, periplasmic maltose-BIND protein; periplasmic binding protein, MBP, maltotriose; HET: MLR; 1.60A {Thermotoga maritima} PDB: 2ghb_A 2fnc_A* Back     alignment and structure
>1y9u_A Putative iron binding protein; periplasmic binding protein, iron tyrosinate interaction, metal binding protein; 1.39A {Bordetella pertussis tohama I} SCOP: c.94.1.1 PDB: 2ows_A 2owt_A Back     alignment and structure
>3py7_A Maltose-binding periplasmic protein,paxillin LD1, chimera; viral protein; HET: MLR; 2.29A {Escherichia coli} Back     alignment and structure
>3mq9_A Bone marrow stromal antigen 2 fused to maltose-BI periplasmic protein; HIV, antiviral protein; 2.80A {Escherichia coli} Back     alignment and structure
>2zyo_A Solute-binding protein; open form, sugar binding protein; HET: GLC; 1.55A {Thermoactinomyces vulgaris} PDB: 2zyk_A* 2zym_A* 2zyn_A* 2dfz_A* Back     alignment and structure
>3i3v_A Probable secreted solute-binding lipoprotein; transporter, PSI-II, structural genomics, protein structure initiative; 2.30A {Streptomyces coelicolor} Back     alignment and structure
>3iot_A Maltose-binding protein, huntingtin fusion protei; HTT-EX1, HD, sugar transport, transport, apoptos disease mutation, nucleus; 3.50A {Escherichia coli k-12} PDB: 3io6_A 3io4_A 3ior_A 3iou_A 3iov_A 3iow_A Back     alignment and structure
>4h1g_A Maltose binding protein-cakar3 motor domain fusio; kinesin motor domain, motor protein, chimera; HET: MTT ADP EDO; 2.15A {Escherichia coli} Back     alignment and structure
>1elj_A Maltodextrin-binding protein; protein-carbohydrate complex, maltose binding protein, MBP fold, ABC transporter fold, thermophilic protein; HET: CME GLC; 1.85A {Pyrococcus furiosus} SCOP: c.94.1.1 Back     alignment and structure
>4b3n_A Maltose-binding periplasmic protein, tripartite motif-containing protein 5; sugar binding protein-ligase complex; HET: MAL MES; 3.30A {Escherichia coli} PDB: 2lm3_A Back     alignment and structure
>3h4z_A Maltose-binding periplasmic protein fused with Al DERP7; MBP fusion, AHA1/BPI domain-like, super roll, sugar T transport, allergen; HET: GLC; 2.35A {Escherichia coli} Back     alignment and structure
>1mh3_A Maltose binding-A1 homeodomain protein chimera; MATA1, binding cooperativity, maltose binding protein, MBP, sugar binding, DNA binding protein; 2.10A {Escherichia coli} SCOP: a.4.1.1 c.94.1.1 PDB: 1mh4_A 1le8_A Back     alignment and structure
>4g68_A ABC transporter; transport protein; HET: XYS; 1.80A {Caldanaerobius} PDB: 4g68_B* Back     alignment and structure
>4hw8_A Bacterial extracellular solute-binding protein, P; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MAL; 2.25A {Staphylococcus aureus subsp} PDB: 4hs7_A* Back     alignment and structure
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A Back     alignment and structure
>2b3f_A Glucose-binding protein; protein-carbohydrate complex, periplasmic binding protein, galactose, GBP, sugar binding protein; HET: GAL; 1.56A {Thermus thermophilus HB27} PDB: 2b3b_A* Back     alignment and structure
>2xz3_A Maltose ABC transporter periplasmic protein, ENVE glycoprotein; viral protein, viral membrane fusion, hairpin, chimera; HET: MAL; 1.95A {Escherichia coli} PDB: 1mg1_A* Back     alignment and structure
>3oai_A Maltose-binding periplasmic protein, myelin prote; schwann cell membrane protein, immunoglobulin-folding, inter adhesion, tetramer; HET: MAL; 2.10A {Escherichia coli} Back     alignment and structure
>4dxb_A RG13, maltose-binding periplasmic protein, beta-lactama chimera; TEM, beta-lactamase, MBP, allosteric regulation, zinc bindin maltose binding; 2.29A {Escherichia coli} PDB: 4dxc_A Back     alignment and structure
>2vgq_A Maltose-binding periplasmic protein, mitochondrial antiviral-signaling protein; immune system/transport, IPS1/MAVS/VISA/cardif; HET: MTT; 2.1A {Escherichia coli} Back     alignment and structure
>1y4c_A Maltose binding protein fused with designed helical protein; de novo designed helical protein, maltose binding protein fusion, de novo protein; HET: GLC; 1.90A {Escherichia coli} Back     alignment and structure
>1hsj_A Fusion protein consisting of staphylococcus accessary regulator protein R and maltose...; novel fold for DNA binding; HET: GLC; 2.30A {Escherichia coli} SCOP: a.4.5.28 c.94.1.1 Back     alignment and structure
>1r6z_P Chimera of maltose-binding periplasmic protein AN argonaute 2; deviant OB fold, RNAI, gene regulation; HET: MAL; 2.80A {Escherichia coli} SCOP: b.34.14.1 c.94.1.1 Back     alignment and structure
>2xd3_A MALX, maltose/maltodextrin-binding protein; solute-binding protein, sugar binding protein, virulence, alpha-glucan, sugar transport; HET: GLC; 2.00A {Streptococcus pneumoniae} PDB: 2xd2_A* Back     alignment and structure
>2gh9_A Maltose/maltodextrin-binding protein; MBP, maltose binding protein, thermoph protein, periplasmic binding protein, sugar binding protein; HET: MLR; 1.95A {Thermus thermophilus} Back     alignment and structure
>3h3g_A Fusion protein of maltose-binding periplasmic DOM human parathyroid hormone receptor...; GPCR, extracellular domain, PTHRP, PTH, PThr1, sugar transpo transport, membrane protein; HET: MAL; 1.94A {Escherichia coli} PDB: 3c4m_A* 3l2j_A* Back     alignment and structure
>4exk_A Maltose-binding periplasmic protein, uncharacteri protein chimera; MCSG, pcsep, MBP-fused target, structural genomics; HET: MTT; 1.28A {Escherichia coli} PDB: 3g7v_A* 3g7w_A* 3sev_A* 3ser_A* 3sew_A* 3set_A* 3ses_A* 3seu_A* 3sex_A* 3sey_A* 3q27_A* 3q28_A* 3q26_A* 3q25_A* 3q29_A* 1nmu_A* 2ok2_A* 3pgf_A* 1t0k_A* 3rum_A* ... Back     alignment and structure
>3f5f_A Maltose-binding periplasmic protein, heparan sulfate 2-O-sulfotransferase 1; maltose binding protein, fusion, heparan sulfate biosynthesis; HET: GLC A3P; 2.65A {Escherichia coli k-12} Back     alignment and structure
>3csg_A MBP, maltose-binding protein monobody YS1 fusion, MMBP; engineered binding protein, antibody mimic, synthetic protein interface; 1.80A {Escherichia coli} PDB: 2obg_A 3csb_A* 3a3c_A* 3d4g_A* 3d4c_A* 3ef7_A* Back     alignment and structure
>3mp6_A MBP, SGF29, maltose-binding periplasmic protein, linker, SAGA associated factor 29; histone, tudor domain, histone binding protei; HET: MLY MAL; 1.48A {Escherichia coli} PDB: 3mp1_A* 3mp8_A* Back     alignment and structure
>2zxt_A Maltose-binding periplasmic protein, linker, MITO intermembrane space import AND...; disulfide bond, alpha helix, fusion, sugar transport; HET: MAL; 3.00A {Escherichia coli} Back     alignment and structure
>4aq4_A SN-glycerol-3-phosphate-binding periplasmic prote; diester-binding protein; HET: G3P; 1.80A {Escherichia coli} Back     alignment and structure
>3osr_A Maltose-binding periplasmic protein, green fluore protein; engineered protein, sensor protein, fluorescent protein, MBP maltose sensor; HET: C12 MAL; 2.00A {Escherichia coli} Back     alignment and structure
>1urs_A Maltose-binding protein; maltodextrin-binding protein, acidophIle, thermoacidophIle, hyperthermophIle, thermophIle; HET: MLR; 1.45A {Alicyclobacillus acidocaldarius} SCOP: c.94.1.1 PDB: 1urg_A* 1urd_A* Back     alignment and structure
>2heu_A Sugar ABC transporter, sugar-binding protein; periplasmic binding protein, transport protein; 1.04A {Streptococcus pneumoniae} PDB: 2hq0_A 2i58_A* 2hfb_A Back     alignment and structure
>2z8f_A Galacto-N-biose/lacto-N-biose I transporter subst binding protein; ABC transporter, mucin core-1, human MILK oligosacchalide; HET: BGC GAL NAG MES; 1.65A {Bifidobacterium longum} PDB: 2z8e_A* 2z8d_A* Back     alignment and structure
>2uvj_A TOGB, ABC type periplasmic sugar-binding protein; periplasmic binding protein, pectin degradation, trigalacturonic acid; HET: ADA; 1.8A {Yersinia enterocolitica} PDB: 2uvi_A* 2uvh_A* 2uvg_A 3u1o_A Back     alignment and structure
>1eu8_A Trehalose/maltose binding protein; protein-carbohydrate complex, MBP 2 fold, ABC transporter fold, thermophilic protein; HET: TRE; 1.90A {Thermococcus litoralis} SCOP: c.94.1.1 Back     alignment and structure
>3dm0_A Maltose-binding periplasmic protein fused with RACK1; MBP RACK1A, receptor for activiated protein C-kinase 1, beta-propeller WD40 repeat; HET: GLC; 2.40A {Escherichia coli} Back     alignment and structure
>3osq_A Maltose-binding periplasmic protein, green fluore protein; engineered protein, sensor protein, fluorescent protein, MBP maltose sensor; HET: C12 MAL; 1.90A {Escherichia coli} Back     alignment and structure
>2w7y_A FCSSBP, probable sugar ABC transporter, sugar-binding protein; solute-binding protein, blood group antigen, carbohydrate transport; HET: A2G GAL FUC; 2.35A {Streptococcus pneumoniae} Back     alignment and structure
>3cg1_A UPF0100 protein PF0080; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.60A {Pyrococcus furiosus} PDB: 3cg3_A Back     alignment and structure
>2nvu_B Maltose binding protein/NEDD8-activating enzyme E1 catalytic subunit chimera; multifunction macromolecular complex, ubiquitin, ATP, conformational change, thioester, switch, adenylation, protein turnover, ligase; HET: ATP; 2.80A {Homo sapiens} SCOP: c.111.1.2 c.94.1.1 Back     alignment and structure
>3thi_A Protein (thiaminase I); thiamin degradation, transferase; 2.00A {Bacillus subtilis} SCOP: c.94.1.1 PDB: 2thi_A 4thi_A Back     alignment and structure
>1sbp_A Sulfate-binding protein; 1.70A {Salmonella typhimurium} SCOP: c.94.1.1 Back     alignment and structure
>4gqo_A LMO0859 protein; virulence, pathogenesis, vaccine candidate, center for struc genomics of infectious diseases, csgid, niaid; HET: MSE PGE; 2.10A {Listeria monocytogenes} Back     alignment and structure
>3a09_A ALGQ1; sugar binding protein, alginate; HET: MAW BEM MAV; 1.40A {Sphingomonas} PDB: 1y3p_A* 1y3q_A 1y3n_A* 3vlv_A* 3vlu_A* 3vlw_A* 1j1n_A* 1kwh_A Back     alignment and structure
>3omb_A Extracellular solute-binding protein, family 1; PSI-2, midwest center for structural genomics, protein struc initiative, MCSG; 2.10A {Bifidobacterium longum subsp} Back     alignment and structure
>3cfx_A UPF0100 protein MA_0280; ABC transporter, binding protein, molybdate, tungstate, LIGA unknown function, transport protein; 1.60A {Methanosarcina acetivorans} Back     alignment and structure
>3cij_A UPF0100 protein AF_0094; archaeal periplasmic binding protein, unknown function, metal binding protein, transport protein; 1.07A {Archaeoglobus fulgidus} PDB: 2ons_A 2onk_E 2onr_A Back     alignment and structure
>3r26_A Molybdate-binding periplasmic protein; protein binding; 1.70A {Escherichia coli} SCOP: c.94.1.1 PDB: 3axf_A 1amf_A 1wod_A Back     alignment and structure
>3vlv_A ALGQ1; sugar binding protein, alginate; HET: MAW LGU; 1.50A {Sphingomonas SP} SCOP: c.94.1.1 PDB: 3vlu_A* 3vlw_A* 1y3n_A* 1y3p_A* 1y3q_A 1j1n_A* 1kwh_A Back     alignment and structure
>3cfz_A UPF0100 protein MJ1186; ABC transporter, binding protein, molybdate, tungstate, ligand, unknown function, transport protein; 1.70A {Methanocaldococcus jannaschii} Back     alignment and structure
>1atg_A MODA, periplasmic molybdate-binding protein; tungstate, ABC transporter; 1.20A {Azotobacter vinelandii} SCOP: c.94.1.1 Back     alignment and structure
>2hxw_A Major antigenic peptide PEB3; periplasmic binding protein, N-glycosylation, structural genomics; HET: FLC; 1.60A {Campylobacter jejuni} PDB: 3fjm_A 3fjg_A 3fir_A* 3fj7_A* Back     alignment and structure
>3gzg_A Molybdate-binding periplasmic protein; permease; molybdate complex, mutant K127S, metal binding protein; 1.55A {Xanthomonas axonopodis PV} PDB: 2h5y_A Back     alignment and structure
>3k6v_A Solute-binding protein MA_0280; MODA, molybdate, periplasmic BIN protein, ABC transporter, transport protein, ligand, metal- protein; HET: CIT; 1.69A {Methanosarcina acetivorans} PDB: 3k6u_A* 3k6w_A 3k6x_A Back     alignment and structure
>4gd5_A Phosphate ABC transporter, phosphate-binding PROT; structural genomics, niaid, national institute of allergy AN infectious diseases; HET: MSE; 1.70A {Clostridium perfringens} Back     alignment and structure
>3muq_A Uncharacterized conserved protein; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; 2.05A {Vibrio parahaemolyticus} Back     alignment and structure
>3lr1_A Tungstate ABC transporter, periplasmic tungstate- binding protein; the tungstate ABC transporter, structural genomics, PSI, MCSG; 1.80A {Geobacter sulfurreducens} Back     alignment and structure
>4ecf_A ABC-type phosphate transport system, periplasmic; ABC transporter, phosphate transport receptor; HET: MSE; 1.55A {Lactobacillus brevis} Back     alignment and structure
>4exl_A PBP 1, phosphate-binding protein PSTS 1; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases; 1.70A {Streptococcus pneumoniae} Back     alignment and structure
>3kn3_A Putative periplasmic protein; alpha-beta structure, periplasmic binding protein fold, STRU genomics, PSI-2, protein structure initiative; HET: GSH CIT; 2.41A {Wolinella succinogenes} Back     alignment and structure
>4i62_A Amino acid ABC transporter, periplasmic amino ACI protein, putative; center for structural genomics of infectious diseases (csgid national institute of allergy and infectious diseases (NIAI niaid; HET: ARG; 1.05A {Streptococcus pneumoniae} Back     alignment and structure
>3kbr_A Cyclohexadienyl dehydratase; pseudomonas aeruginos structural genomics, PSI-2, protein structure initiative; HET: EPE; 1.66A {Pseudomonas aeruginosa} Back     alignment and structure
>1ii5_A SLR1257 protein; membrane protein; HET: GLU; 1.60A {Synechocystis SP} SCOP: c.94.1.1 PDB: 1iit_A 1iiw_A Back     alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query 315
d1pota_322 c.94.1.1 (A:) Spermidine/putrescine-binding protei 7e-11
d1a99a_341 c.94.1.1 (A:) Putrescine receptor (PotF) {Escheric 7e-10
>d1pota_ c.94.1.1 (A:) Spermidine/putrescine-binding protein PotD {Escherichia coli [TaxId: 562]} Length = 322 Back     information, alignment and structure

class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Phosphate binding protein-like
domain: Spermidine/putrescine-binding protein PotD
species: Escherichia coli [TaxId: 562]

 Score = 59.8 bits (143), Expect = 7e-11
 Identities = 44/239 (18%), Positives = 73/239 (30%), Gaps = 49/239 (20%)

Query: 17  GKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSIAV 76
               + PY WG   I          +   +  W DLW+PE  G + + +  REV      
Sbjct: 97  NNDYSIPYIWGATAIGVNGDAVDPKS---VTSWADLWKPEYKGSLLLTDDAREVFQMALR 153

Query: 77  QLNLALLANQSAHHLKA----------------------FGIGDVWVAVGWSSDVLPAVK 114
           +L  +           A                      +  G+V + + W+     A +
Sbjct: 154 KLGYSGNTTDPKEIEAAYNELKKLMPNVAAFNSDNPANPYMEGEVNLGMIWNGSAFVARQ 213

Query: 115 HMS-NVAVVPKSGASLWADLWAIPAASRLETKQIGGRVRGLSPLIHQWIEFCLQTARALP 173
             +    V PK G   W D  AIPA ++                  + I F L+   A  
Sbjct: 214 AGTPIDVVWPKEGGIFWMDSLAIPANAK------------NKEGALKLINFLLRPDVAKQ 261

Query: 174 FKQEVIPGASPSALESTLVKLPGELLKGKPSLDTNLIAGVPPAEILARFEFLEPLSEAT 232
             + +     P+   +    L  E+   K           P AE +   E+   +  A+
Sbjct: 262 VAETI---GYPTPNLAARKLLSPEVANDKTL--------YPDAETIKNGEWQNDVGAAS 309
>d1a99a_ c.94.1.1 (A:) Putrescine receptor (PotF) {Escherichia coli [TaxId: 562]} Length = 341 Back     information, alignment and structure

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query315
d1pota_322 Spermidine/putrescine-binding protein PotD {Escher 99.97
d1a99a_341 Putrescine receptor (PotF) {Escherichia coli [TaxI 99.9
d1xvxa_311 Ferric-binding protein FbpA {Yersinia enterocoliti 99.78
d1q35a_318 Ferric-binding protein FbpA {Mannheimia haemolytic 99.78
d1nnfa_308 Ferric-binding protein FbpA {Haemophilus influenza 99.65
d1ursa_367 D-maltodextrin-binding protein, MBP {Alicyclobacil 99.65
d1elja_380 D-maltodextrin-binding protein, MBP {Archaeon Pyro 99.63
d1eu8a_407 D-maltodextrin-binding protein, MBP {Archaeon Ther 99.61
d1laxa_369 D-maltodextrin-binding protein, MBP {Escherichia c 99.59
d1y4ta_317 Ferric-binding protein FbpA {Campylobacter jejuni 99.58
d1y9ua_318 Ferric-binding protein FbpA {Bordetella pertussis 99.55
d3thia_362 Thiaminase I {Paenibacillus thiaminolyticus [TaxId 99.54
d1atga_231 Molybdate-binding protein, ModA {Azotobacter vinel 99.25
d1j1na_492 Alginate-binding periplasmic protein AlgQ2 {Sphing 99.19
d1sbpa_309 Sulphate-binding protein {Salmonella typhimurium [ 99.11
d1amfa_231 Molybdate-binding protein, ModA {Escherichia coli 99.07
d2onsa1311 Molybdate-binding protein, ModA {Archaeoglobus ful 97.93
d1twya_249 ABC transporter, periplasmic substrate-binding pro 96.88
d2a5sa1277 N-methyl-D-aspartate receptor subunit 1 {Rat (Ratt 91.13
d1pb7a_289 N-methyl-D-aspartate receptor subunit 1 {Rat (Ratt 83.84
>d1pota_ c.94.1.1 (A:) Spermidine/putrescine-binding protein PotD {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
class: Alpha and beta proteins (a/b)
fold: Periplasmic binding protein-like II
superfamily: Periplasmic binding protein-like II
family: Phosphate binding protein-like
domain: Spermidine/putrescine-binding protein PotD
species: Escherichia coli [TaxId: 562]

Probab=99.97  E-value=3.5e-30  Score=237.28  Aligned_cols=212  Identities=23%  Similarity=0.360  Sum_probs=177.6

Q ss_pred             ccCCCCcCCCCCeEeeeeeeceEEEEEecccccccCCCCCCChHhhcCcccCCceEeecChHHHhhHH------------
Q 036082            7 RNDAGEIDPRGKICAAPYRWGTVVIAYKKSKFRKHNLAPIEDWKDLWRPELAGRISMVNSPREVIGSI------------   74 (315)
Q Consensus         7 ~~~~~~~DpdG~~Y~vP~~~g~~gi~YN~d~~~~~Gl~~P~SW~dL~dp~~~Gki~~~d~~~~~~g~a------------   74 (315)
                      .+....+++ |+.|++|+.+++.+++||++++++   .+|+||+|||+++++|++.+.+.+...++.+            
T Consensus        88 ~~~~~~~~~-g~~~~~P~~~~~~~l~Yn~~~~~~---~~p~sw~dl~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  163 (322)
T d1pota_          88 DMLNKPFDP-NNDYSIPYIWGATAIGVNGDAVDP---KSVTSWADLWKPEYKGSLLLTDDAREVFQMALRKLGYSGNTTD  163 (322)
T ss_dssp             GGSCCTTST-TCSSCEEEEEEEEEEEEETTTSCT---TTCCSSGGGGSGGGTTCEEECSCHHHHHHHHHHHTTCCTTCCC
T ss_pred             hhhccccCC-CCceEeeeeeeeeeeEehhhhcCc---cccCcHHHHhChHhhhcccccCchhhhhHHHHHHhccCccccc
Confidence            334444454 788999999999999999999987   3799999999999999999988877665543            


Q ss_pred             --HHHHHHHHHHhh--------cHHHHHHHHcCCEEEEEEehhhHHHHHHcCCCeEE-EeCCCceeeeeeEEEeCCCCCc
Q 036082           75 --AVQLNLALLANQ--------SAHHLKAFGIGDVWVAVGWSSDVLPAVKHMSNVAV-VPKSGASLWADLWAIPAASRLE  143 (315)
Q Consensus        75 --~~~~a~~~L~~~--------~~~~~~~~~~Gev~~~~~ws~~~~~~~~~~~~i~~-~PkeG~~~~~d~~~I~k~s~~~  143 (315)
                        .....++.+.++        +++..++|.+|++.+++.|++.+......+.++++ +|++|+.+|+++++|+|+++|+
T Consensus       164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~~~~p~~g~~~~~~~~~I~k~a~n~  243 (322)
T d1pota_         164 PKEIEAAYNELKKLMPNVAAFNSDNPANPYMEGEVNLGMIWNGSAFVARQAGTPIDVVWPKEGGIFWMDSLAIPANAKNK  243 (322)
T ss_dssp             HHHHHHHHHHHHHTGGGEEEECSSCTHHHHHTTSCSEEEEEHHHHHHHHTTSCCEEEECCTTCCEEEEEEEBCBTTCTTH
T ss_pred             hhhHHHHHHHHHHhccccceeeccccccccccCcEEEEEEechhHHHHHhhccccceeeccCCceeeeeeeEEecCCCCH
Confidence              123344444433        34667899999999999999999999999999999 9999999999999999999999


Q ss_pred             ccccCCCCCCCHHHHHHHHHHHhcHHHHHHHHhhhCCCCCCCchhhhccCCChhhhcCCCCCCcccccCCCcHHHhhccc
Q 036082          144 TKQIGGRVRGLSPLIHQWIEFCLQTARALPFKQEVIPGASPSALESTLVKLPGELLKGKPSLDTNLIAGVPPAEILARFE  223 (315)
Q Consensus       144 ~~~~~~~~~~~~~~A~~FInfllspe~q~~~~~e~~~~~~P~~~~~a~~~l~~e~~~~~~~~~~~~~~~~p~~~~~~~~~  223 (315)
                      +            +|++||+||+|||+|..+++ ..++.+|+  ..+...+++++++..        .++|+.+.+.+.+
T Consensus       244 ~------------~A~~fi~fl~s~e~q~~~~~-~~g~~p~~--~~a~~~~~~e~~~~~--------~~~~~~~~~~~~~  300 (322)
T d1pota_         244 E------------GALKLINFLLRPDVAKQVAE-TIGYPTPN--LAARKLLSPEVANDK--------TLYPDAETIKNGE  300 (322)
T ss_dssp             H------------HHHHHHHHHHSHHHHHHHHH-HHCCCCSB--STTTTTSCHHHHTCT--------TTSCCHHHHHHSE
T ss_pred             H------------HHHHHHHHHcCHHHHHHHHH-HhCCCCcC--HHHHhhCCHHHHhCc--------ccCCCHHHHhhCc
Confidence            8            99999999999999999995 56776665  467778999998753        3588899999999


Q ss_pred             cccCCCHHHHHHHHHHHHHhcccC
Q 036082          224 FLEPLSEATLSDMSGWEIGSGQLG  247 (315)
Q Consensus       224 ~~~~l~~~~~~~~~~~~W~~ikag  247 (315)
                      ++.++++. .+.|++ .|++|++|
T Consensus       301 ~~~~~~~~-~~~~~~-~~~~~~ag  322 (322)
T d1pota_         301 WQNDVGAA-SSIYEE-YYQKLKAG  322 (322)
T ss_dssp             ECCCCGGG-HHHHHH-HHHHHTTC
T ss_pred             hhhcCHHH-HHHHHH-HHHHHhCC
Confidence            99888654 678999 99999998
>d1a99a_ c.94.1.1 (A:) Putrescine receptor (PotF) {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1xvxa_ c.94.1.1 (A:) Ferric-binding protein FbpA {Yersinia enterocolitica, YfuA [TaxId: 630]} Back     information, alignment and structure
>d1q35a_ c.94.1.1 (A:) Ferric-binding protein FbpA {Mannheimia haemolytica [TaxId: 75985]} Back     information, alignment and structure
>d1nnfa_ c.94.1.1 (A:) Ferric-binding protein FbpA {Haemophilus influenzae [TaxId: 727]} Back     information, alignment and structure
>d1ursa_ c.94.1.1 (A:) D-maltodextrin-binding protein, MBP {Alicyclobacillus acidocaldarius [TaxId: 405212]} Back     information, alignment and structure
>d1elja_ c.94.1.1 (A:) D-maltodextrin-binding protein, MBP {Archaeon Pyrococcus furiosus [TaxId: 2261]} Back     information, alignment and structure
>d1eu8a_ c.94.1.1 (A:) D-maltodextrin-binding protein, MBP {Archaeon Thermococcus litoralis [TaxId: 2265]} Back     information, alignment and structure
>d1laxa_ c.94.1.1 (A:) D-maltodextrin-binding protein, MBP {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d1y4ta_ c.94.1.1 (A:) Ferric-binding protein FbpA {Campylobacter jejuni [TaxId: 197]} Back     information, alignment and structure
>d1y9ua_ c.94.1.1 (A:) Ferric-binding protein FbpA {Bordetella pertussis [TaxId: 520]} Back     information, alignment and structure
>d3thia_ c.94.1.1 (A:) Thiaminase I {Paenibacillus thiaminolyticus [TaxId: 49283]} Back     information, alignment and structure
>d1atga_ c.94.1.1 (A:) Molybdate-binding protein, ModA {Azotobacter vinelandii [TaxId: 354]} Back     information, alignment and structure
>d1j1na_ c.94.1.1 (A:) Alginate-binding periplasmic protein AlgQ2 {Sphingomonas sp. [TaxId: 28214]} Back     information, alignment and structure
>d1sbpa_ c.94.1.1 (A:) Sulphate-binding protein {Salmonella typhimurium [TaxId: 90371]} Back     information, alignment and structure
>d1amfa_ c.94.1.1 (A:) Molybdate-binding protein, ModA {Escherichia coli [TaxId: 562]} Back     information, alignment and structure
>d2onsa1 c.94.1.1 (A:32-342) Molybdate-binding protein, ModA {Archaeoglobus fulgidus [TaxId: 2234]} Back     information, alignment and structure
>d1twya_ c.94.1.1 (A:) ABC transporter, periplasmic substrate-binding protein VCA0807 {Vibrio cholerae [TaxId: 666]} Back     information, alignment and structure
>d2a5sa1 c.94.1.1 (A:7-142,A:145-285) N-methyl-D-aspartate receptor subunit 1 {Rat (Rattus norvegicus), subtype 2A [TaxId: 10116]} Back     information, alignment and structure
>d1pb7a_ c.94.1.1 (A:) N-methyl-D-aspartate receptor subunit 1 {Rat (Rattus norvegicus) [TaxId: 10116]} Back     information, alignment and structure