Citrus Sinensis ID: 036090
Local Sequence Feature Prediction
| Prediction and (Method) | Result |
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Close Homologs for Annotation Transfer
Close Homologs in the Non-Redundant Database Detected by BLAST 
Original result of BLAST against Nonredundant Database
GI ![]() | Alignment Graph ![]() | Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 177 | ||||||
| 255537843 | 177 | conserved hypothetical protein [Ricinus | 0.926 | 0.926 | 0.536 | 2e-34 | |
| 225426288 | 167 | PREDICTED: uncharacterized protein LOC10 | 0.536 | 0.568 | 0.726 | 3e-33 | |
| 358248722 | 150 | uncharacterized protein LOC100788535 [Gl | 0.587 | 0.693 | 0.6 | 1e-32 | |
| 356513275 | 166 | PREDICTED: uncharacterized protein LOC10 | 0.649 | 0.692 | 0.577 | 1e-32 | |
| 56783848 | 229 | unknown protein [Oryza sativa Japonica G | 0.497 | 0.384 | 0.663 | 1e-31 | |
| 297596400 | 179 | Os01g0235100 [Oryza sativa Japonica Grou | 0.864 | 0.854 | 0.515 | 2e-31 | |
| 195615298 | 152 | hypothetical protein [Zea mays] | 0.610 | 0.710 | 0.618 | 4e-31 | |
| 218187828 | 180 | hypothetical protein OsI_01055 [Oryza sa | 0.423 | 0.416 | 0.813 | 5e-31 | |
| 224072220 | 87 | predicted protein [Populus trichocarpa] | 0.440 | 0.896 | 0.820 | 5e-31 | |
| 224058178 | 88 | predicted protein [Populus trichocarpa] | 0.451 | 0.909 | 0.8 | 5e-31 |
| >gi|255537843|ref|XP_002509988.1| conserved hypothetical protein [Ricinus communis] gi|223549887|gb|EEF51375.1| conserved hypothetical protein [Ricinus communis] | Back alignment and taxonomy information |
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Score = 150 bits (379), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 102/190 (53%), Positives = 123/190 (64%), Gaps = 26/190 (13%)
Query: 1 MAAALLSLPAATRHETPVSQRS-STSSGYLIFHRSLSVASIKCPYNNRPTVLLCSAATSV 59
MA L+S+P T ++T SQR +T+ L R S+ SI + NR L S+++S
Sbjct: 1 MAITLVSVP--TINQTLSSQRPYNTNLNTLTLTRYSSIKSIT--FINR---LCSSSSSST 53
Query: 60 SVVED-----------VSSPLPPDAAATEGADKVGFRGCKVCGKEELEKGCNGEGTIQGG 108
SVVE+ V SPLPP AD+V GCK CG++E+EKGCNGEG IQGG
Sbjct: 54 SVVEEDGPASTPDDLPVQSPLPP-----VNADEVPVGGCKACGRQEIEKGCNGEGRIQGG 108
Query: 109 IATVPGFGWWPIKAYRPCPGFLASGGRYRRQGQTMDEVAFGRGEKRAPVSSDSENIDPSK 168
IATV GFGWWPIKAYRPCPGF+ASGGRYRRQGQ+MDEV GRG PV S +E ++ SK
Sbjct: 109 IATVSGFGWWPIKAYRPCPGFVASGGRYRRQGQSMDEVVSGRGNPGTPVGSSTE-VESSK 167
Query: 169 SRGG-RKFKR 177
R RKFKR
Sbjct: 168 ERQDPRKFKR 177
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Source: Ricinus communis Species: Ricinus communis Genus: Ricinus Family: Euphorbiaceae Order: Malpighiales Class: Phylum: Streptophyta Superkingdom: Eukaryota |
| >gi|225426288|ref|XP_002267043.1| PREDICTED: uncharacterized protein LOC100264984 [Vitis vinifera] gi|297742356|emb|CBI34505.3| unnamed protein product [Vitis vinifera] | Back alignment and taxonomy information |
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| >gi|358248722|ref|NP_001239929.1| uncharacterized protein LOC100788535 [Glycine max] gi|255640951|gb|ACU20755.1| unknown [Glycine max] | Back alignment and taxonomy information |
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| >gi|356513275|ref|XP_003525339.1| PREDICTED: uncharacterized protein LOC100810596 [Glycine max] | Back alignment and taxonomy information |
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| >gi|56783848|dbj|BAD81260.1| unknown protein [Oryza sativa Japonica Group] gi|56783951|dbj|BAD81388.1| unknown protein [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
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| >gi|297596400|ref|NP_001042519.2| Os01g0235100 [Oryza sativa Japonica Group] gi|255673036|dbj|BAF04433.2| Os01g0235100 [Oryza sativa Japonica Group] | Back alignment and taxonomy information |
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| >gi|195615298|gb|ACG29479.1| hypothetical protein [Zea mays] | Back alignment and taxonomy information |
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| >gi|218187828|gb|EEC70255.1| hypothetical protein OsI_01055 [Oryza sativa Indica Group] | Back alignment and taxonomy information |
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| >gi|224072220|ref|XP_002303659.1| predicted protein [Populus trichocarpa] gi|222841091|gb|EEE78638.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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| >gi|224058178|ref|XP_002299460.1| predicted protein [Populus trichocarpa] gi|222846718|gb|EEE84265.1| predicted protein [Populus trichocarpa] | Back alignment and taxonomy information |
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Prediction of Gene Ontology (GO) Terms
Close Homologs with Gene Ontology terms Detected by BLAST 
Original result of BLAST against Gene Ontology (AMIGO)
ID ![]() |
Alignment graph ![]() |
Length ![]() |
Definition ![]() |
Q cover ![]() |
H cover ![]() |
Identity ![]() |
E-value ![]() |
| Query | 177 | ||||||
| TAIR|locus:2165795 | 164 | AT5G42070 "AT5G42070" [Arabido | 0.548 | 0.591 | 0.616 | 2.6e-31 |
| TAIR|locus:2165795 AT5G42070 "AT5G42070" [Arabidopsis thaliana (taxid:3702)] | Back alignment and assigned GO terms |
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Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
Identities = 61/99 (61%), Positives = 73/99 (73%)
Query: 67 SPLPPDAAATEGADK--VGFRGCKVCGKEELEKGCNGEGTIQGGIATVPGFGWWPIKAYR 124
S P T+ D + F GC+ CGKEE E GCNG+G IQGGIATVPGFGWWPIKAYR
Sbjct: 49 SSSPSSVVETDNDDDNDLTFSGCRACGKEEKESGCNGDGRIQGGIATVPGFGWWPIKAYR 108
Query: 125 PCPGFLASGGRYRRQGQTMDEVAFGRGEKRAPVSSDSEN 163
PCP F+ +GGRYRR GQ+MDEVAFGRG+ ++ S D+ +
Sbjct: 109 PCPAFVEAGGRYRRIGQSMDEVAFGRGDSKSSTSVDTSD 147
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.132 0.403 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 177 177 0.00084 109 3 11 22 0.46 32
31 0.50 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 1
No. of states in DFA: 585 (62 KB)
Total size of DFA: 147 KB (2090 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 17.85u 0.09s 17.94t Elapsed: 00:00:01
Total cpu time: 17.85u 0.09s 17.94t Elapsed: 00:00:01
Start: Fri May 10 23:34:48 2013 End: Fri May 10 23:34:49 2013
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Prediction of Enzyme Commission (EC) Number
EC Number Prediction by Ezypred Server 
Original result from Ezypred Server
Fail to connect to Ezypred Server
Prediction of Functionally Associated Proteins
Functionally Associated Proteins Detected by STRING 
Original result from the STRING server
Fail to connect to STRING server
Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against CDD database part I
Conserved Domains Detected by HHsearch 
Original result of HHsearch against CDD database
No hit with probability above 80.00
Homologous Structure Templates
Structure Templates Detected by BLAST 
Original result of BLAST against Protein Data Bank
No homologous structure with e-value below 0.005
Structure Templates Detected by RPS-BLAST 
Original result of RPS-BLAST against PDB70 database
No hit with e-value below 0.005
Structure Templates Detected by HHsearch 
Original result of HHsearch against PDB70 database
No hit with probability above 80.00
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST 
Original result of RPS-BLAST against SCOP70(version1.75) database
No hit with e-value below 0.005
Homologous Domains Detected by HHsearch 
Original result of HHsearch against SCOP70(version1.75) database
No hit with probability above 80.00