Citrus Sinensis ID: 036090


Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------
MAAALLSLPAATRHETPVSQRSSTSSGYLIFHRSLSVASIKCPYNNRPTVLLCSAATSVSVVEDVSSPLPPDAAATEGADKVGFRGCKVCGKEELEKGCNGEGTIQGGIATVPGFGWWPIKAYRPCPGFLASGGRYRRQGQTMDEVAFGRGEKRAPVSSDSENIDPSKSRGGRKFKR
cccccccccccccccccccccccccccEEEEEcccccccccccccccccEEEEcccccEEEEcccccccccccccccccccccccccccccHHHHHHccccccEEEcccccccccccEEEEEEccccHHHccccEEEEEccccccEEEccccccccccccccccccccccccccccc
ccHHHHcccccccccccccccccccccEEEEEccEEEEEEccccccccEEEEccccccEEEEEccccccccccccccccccccccccccccHHHHHcccccccEEEccEEEcccccccccEccccccHHHHcccEEEEccccccEEEEccccccccccccccccccccccccccccc
MAAALlslpaatrhetpvsqrsstssgylIFHRSLsvasikcpynnrptvlLCSAATSVsvvedvssplppdaaategadkvgfrgckvcgkeelekgcngegtiqggiatvpgfgwwpikayrpcpgflasggryrrqgqtmdevafgrgekrapvssdsenidpsksrggrkfkr
maaallslpaatrhetpvsqrsstssgYLIFHRSLSVASIKCPYNNRPTVLLCSAATSVSVVEDVSSPLppdaaategadkvgfRGCKVCGKEELEKGCNGEGTIQGGIATVPGFGWWPIKAYRPCPGFLASGGRYRRQGQTMDEVafgrgekrapvssdsenidpsksrggrkfkr
MAAALLSLPAATRHETPVSQRSSTSSGYLIFHRSLSVASIKCPYNNRPTVLLCSAATSVSVVEDVSSPLPPDAAATEGADKVGFRGCKVCGKEELEKGCNGEGTIQGGIATVPGFGWWPIKAYRPCPGFLASGGRYRRQGQTMDEVAFGRGEKRAPVSSDSENIDPSKSRGGRKFKR
***************************YLIFHRSLSVASIKCPYNNRPTVLLCSAATSVSVVE****************DKVGFRGCKVCGKEELEKGCNGEGTIQGGIATVPGFGWWPIKAYRPCPGFLASGGRY*****************************************
***AL*SLPAATRHETP******TSSGYLIFHRSLSVASIKC******************************************RGCKVCG***********GTIQGGIATVPGFGWWPIKAYRPCPGFLASGGRYRRQGQTM**********************************
MAAALLSLPAA***************GYLIFHRSLSVASIKCPYNNRPTVLLCSAATSVSVVEDVSSPLPPDAAATEGADKVGFRGCKVCGKEELEKGCNGEGTIQGGIATVPGFGWWPIKAYRPCPGFLASGGRYRRQGQTMDEVAFGR***************************
*************************SGYLIFHRSLSVASIKCPYNNRPTVLLCSAATSVSVVEDVSSPLPPDA******D*VGFRGCKVCGKEELEKGCNGEGTIQGGIATVPGFGWWPIKAYRPCPGFLASGGRYRRQGQTMDEVAFGR***************************
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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ooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooo
SSSSSSSSSSSSSoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
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MAAALLSLPAATRHETPVSQRSSTSSGYLIFHRSLSVASIKCPYNNRPTVLLCSAATSVSVVEDVSSPLPPDAAATEGADKVGFRGCKVCGKEELEKGCNGEGTIQGGIATVPGFGWWPIKAYRPCPGFLASGGRYRRQGQTMDEVAFGRGEKRAPVSSDSENIDPSKSRGGRKFKR
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST ?

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query177
255537843177 conserved hypothetical protein [Ricinus 0.926 0.926 0.536 2e-34
225426288167 PREDICTED: uncharacterized protein LOC10 0.536 0.568 0.726 3e-33
358248722150 uncharacterized protein LOC100788535 [Gl 0.587 0.693 0.6 1e-32
356513275166 PREDICTED: uncharacterized protein LOC10 0.649 0.692 0.577 1e-32
56783848229 unknown protein [Oryza sativa Japonica G 0.497 0.384 0.663 1e-31
297596400179 Os01g0235100 [Oryza sativa Japonica Grou 0.864 0.854 0.515 2e-31
195615298152 hypothetical protein [Zea mays] 0.610 0.710 0.618 4e-31
218187828180 hypothetical protein OsI_01055 [Oryza sa 0.423 0.416 0.813 5e-31
22407222087 predicted protein [Populus trichocarpa] 0.440 0.896 0.820 5e-31
22405817888 predicted protein [Populus trichocarpa] 0.451 0.909 0.8 5e-31
>gi|255537843|ref|XP_002509988.1| conserved hypothetical protein [Ricinus communis] gi|223549887|gb|EEF51375.1| conserved hypothetical protein [Ricinus communis] Back     alignment and taxonomy information
 Score =  150 bits (379), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 102/190 (53%), Positives = 123/190 (64%), Gaps = 26/190 (13%)

Query: 1   MAAALLSLPAATRHETPVSQRS-STSSGYLIFHRSLSVASIKCPYNNRPTVLLCSAATSV 59
           MA  L+S+P  T ++T  SQR  +T+   L   R  S+ SI   + NR   L  S+++S 
Sbjct: 1   MAITLVSVP--TINQTLSSQRPYNTNLNTLTLTRYSSIKSIT--FINR---LCSSSSSST 53

Query: 60  SVVED-----------VSSPLPPDAAATEGADKVGFRGCKVCGKEELEKGCNGEGTIQGG 108
           SVVE+           V SPLPP       AD+V   GCK CG++E+EKGCNGEG IQGG
Sbjct: 54  SVVEEDGPASTPDDLPVQSPLPP-----VNADEVPVGGCKACGRQEIEKGCNGEGRIQGG 108

Query: 109 IATVPGFGWWPIKAYRPCPGFLASGGRYRRQGQTMDEVAFGRGEKRAPVSSDSENIDPSK 168
           IATV GFGWWPIKAYRPCPGF+ASGGRYRRQGQ+MDEV  GRG    PV S +E ++ SK
Sbjct: 109 IATVSGFGWWPIKAYRPCPGFVASGGRYRRQGQSMDEVVSGRGNPGTPVGSSTE-VESSK 167

Query: 169 SRGG-RKFKR 177
            R   RKFKR
Sbjct: 168 ERQDPRKFKR 177




Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225426288|ref|XP_002267043.1| PREDICTED: uncharacterized protein LOC100264984 [Vitis vinifera] gi|297742356|emb|CBI34505.3| unnamed protein product [Vitis vinifera] Back     alignment and taxonomy information
>gi|358248722|ref|NP_001239929.1| uncharacterized protein LOC100788535 [Glycine max] gi|255640951|gb|ACU20755.1| unknown [Glycine max] Back     alignment and taxonomy information
>gi|356513275|ref|XP_003525339.1| PREDICTED: uncharacterized protein LOC100810596 [Glycine max] Back     alignment and taxonomy information
>gi|56783848|dbj|BAD81260.1| unknown protein [Oryza sativa Japonica Group] gi|56783951|dbj|BAD81388.1| unknown protein [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|297596400|ref|NP_001042519.2| Os01g0235100 [Oryza sativa Japonica Group] gi|255673036|dbj|BAF04433.2| Os01g0235100 [Oryza sativa Japonica Group] Back     alignment and taxonomy information
>gi|195615298|gb|ACG29479.1| hypothetical protein [Zea mays] Back     alignment and taxonomy information
>gi|218187828|gb|EEC70255.1| hypothetical protein OsI_01055 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|224072220|ref|XP_002303659.1| predicted protein [Populus trichocarpa] gi|222841091|gb|EEE78638.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|224058178|ref|XP_002299460.1| predicted protein [Populus trichocarpa] gi|222846718|gb|EEE84265.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query177
TAIR|locus:2165795164 AT5G42070 "AT5G42070" [Arabido 0.548 0.591 0.616 2.6e-31
TAIR|locus:2165795 AT5G42070 "AT5G42070" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 344 (126.2 bits), Expect = 2.6e-31, P = 2.6e-31
 Identities = 61/99 (61%), Positives = 73/99 (73%)

Query:    67 SPLPPDAAATEGADK--VGFRGCKVCGKEELEKGCNGEGTIQGGIATVPGFGWWPIKAYR 124
             S  P     T+  D   + F GC+ CGKEE E GCNG+G IQGGIATVPGFGWWPIKAYR
Sbjct:    49 SSSPSSVVETDNDDDNDLTFSGCRACGKEEKESGCNGDGRIQGGIATVPGFGWWPIKAYR 108

Query:   125 PCPGFLASGGRYRRQGQTMDEVAFGRGEKRAPVSSDSEN 163
             PCP F+ +GGRYRR GQ+MDEVAFGRG+ ++  S D+ +
Sbjct:   109 PCPAFVEAGGRYRRIGQSMDEVAFGRGDSKSSTSVDTSD 147


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.315   0.132   0.403    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0      177       177   0.00084  109 3  11 22  0.46    32
                                                     31  0.50    34


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  1
  No. of states in DFA:  585 (62 KB)
  Total size of DFA:  147 KB (2090 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  17.85u 0.09s 17.94t   Elapsed:  00:00:01
  Total cpu time:  17.85u 0.09s 17.94t   Elapsed:  00:00:01
  Start:  Fri May 10 23:34:48 2013   End:  Fri May 10 23:34:49 2013


GO:0003674 "molecular_function" evidence=ND
GO:0005634 "nucleus" evidence=ISM
GO:0008150 "biological_process" evidence=ND
GO:0009535 "chloroplast thylakoid membrane" evidence=IDA
GO:0009507 "chloroplast" evidence=IDA
GO:0009965 "leaf morphogenesis" evidence=RCA
GO:0030154 "cell differentiation" evidence=RCA
GO:0045893 "positive regulation of transcription, DNA-dependent" evidence=RCA

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server ?

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!


Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Fail to connect to STRING server


Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Conserved Domains Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Templates

Structure Templates Detected by BLAST ?

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST ?

No hit with e-value below 0.005

Structure Templates Detected by HHsearch ?

No hit with probability above 80.00


Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

No hit with probability above 80.00