Citrus Sinensis ID: 036117

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-
Protein Sequence
MVHRTLHFLILSYVVVQISAQKEAKALLNWKSSLVSSSLPSWTAINSNSGPCNWNGIQCNEVGSISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIPAEIGKLSRLQYLD
Secondary Structure (PSIPRED)
cHHHHHHHHHHHHHHHccccHHHHHHHHHHHHcccccccccccccccccccccccEEEccccccEEEEEcccccccEEcccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEEccccccccccccccccccccEEEcccccccccHHHHHccccccEEEcccccccccccHHHHcccccccEEEccccccEEcccccccccccccEEEcccccccccccHHccccccccEEEcccccccccccHHHHcccccccccccccEEEEEccccccccccccEEEcccccccccccHHcccccccccEEccccccccccEEEEEccccEEcccHHcccccccccccccccEEEEccccccccccccccEEccccEEcccccHHHHccccccEEEcccccccccccHHHHccccccccccccEEEcccccccccccHHcccccccccEEcccccccccccccccccccccEEEcccccccccccHHccccccccEEEcccccccccccHHHHHcccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHHccccccEEEcccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
cHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHccccccHHcccccccccccccEEEEEcccccEEEEEEccccccccccHHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHHcccccccEEEcccccccccccHHcccccccEEEccccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccccccccccccccccEEEcccccccEEccccccccccccEEEcccccccEEccccccccccccEEEccccccccccHHHHcccccccEEEcccccccccEEEEcccccccccccHHHccccccEEEEcccccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEcccEEEcccccccccccHHHcccccccEEEccEccEEccccHHHHHcccccEEEEEEEccEEEccHHHHHcccccEEEccccEEEccccHHHHHcccccEEEccccccEEEccHHHHccccccEEEcccccccccccHHHHccccccEEEcccccccccccHHHHccccccccc
Coil and Loop (DISEMBL)
MVHRTLHFLILSYVVVQISAQKEAKALLNWKSSlvssslpswtainsnsgpcnwngiqcnevgsiseinlansgldgtldgfdfsafpnltalnlnmnnlvgsipagigNATKLILLDLssnnltnpippeigylSDLRVLLLYNnsltgqiphQLSNLQNAWLLRIGanyledpdpvkfkgmASLTDLWLDYNLLEKFPSFIAECSKLMfldlsdnlimghipieqlthlenleylnltknsfegeipreiktfpklrhlklgqnkltgtipdeigllsNLEILEFHENLfhglipsslgnLRRLQRLNlksaglnssipkelgfcANLTFLELSINNltgslplsLASLRQISELGISNNQLSEIISLQLQMndlsgklppeigllpkleYLYLFdnkfsgpipqqignltnlfdlqlannffngsipstiGNLSSLVKLSlssnqltgtlppeignsksdfgprflrNVSFsynnfsgklppgicrggnliYLTANVNklvgpipeslwnctgltrvrleqnrldgditnalgiypdlqyidlgdnqlsgvltsnwgkctnlsnfrisgnrikggipaelgnltylqnldifdnqltgkipaqlfRSSFLIRLNLRRnqlsdkipaeigklsrlqyld
Flexible Loop (DISEMBL)
MVHRTLHFLILSYVVVQISAQKEAKALLNWKSSLVSSSLPSWTAINSNSGPCNWNGIQCNEVGSISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRrnqlsdkipaeigklsrlqyld
Low Complexity Region (SEG)
MVHRTLHFLILSYVVVQISAQKEAKAllnwksslvssslpsWTAINSNSGPCNWNGIQCNEVGSISEINLANSGLDGTLDGFDFSAFPnltalnlnmnnlVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSlgnlrrlqrlnlKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNlsslvklslssnqlTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIPAEIGKLSRLQYLD
Disordered region (IsUnstruct)
***RTLHFLILSYVVVQISAQKEAKALLNWKSSLVSSSLPSWTAINSNSGPCNWNGIQCNEVGSISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSL*******************FGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQL******************
Disordered Region (DISOPRED)
MVHRTLHFLILSYVVVQISAQKEAKALLNWKSSLVS*SL*SWTAINSNSGPCNWNGIQCNEVGSISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIPAEIGKLSRLQYLD
Disordered Region (DISEMBL)
MVHRTLHFLILSYVVVQISAQKEAKALLNWKSSLVSSSLPSWTAINSNSGPCNWNGIQCNEVGSISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIPAEIGKLSRLQYLD
Disordered Region (DISPRO)
MVHRTLHFLILSYVVVQISAQKEAKALLNWKSSLVSSSLPSWTAINSNSGPCNWNGIQCNEVGSISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIPAEIGKLSRL****
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
SSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MVHRTLHFLILSYVVVQISAQKEAKALLNWKSSLVSSSLPSWTAINSNSGPCNWNGIQCNEVGSISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIPAEIGKLSRLQYLD
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	641	2.2.26 [Sep-21-2011]
Q9LP24	1120	Probable leucine-rich rep	yes	no	0.934	0.534	0.397	1e-103
C0LGQ5	1249	LRR receptor-like serine/	no	no	0.943	0.484	0.360	4e-85
Q8VZG8	1045	Probable LRR receptor-lik	no	no	0.946	0.580	0.344	1e-82
Q9SHI2	1101	Leucine-rich repeat recep	no	no	0.951	0.554	0.348	8e-82
C0LGV1	1135	LRR receptor-like serine/	no	no	0.954	0.539	0.346	2e-81
P93194	1109	Receptor-like protein kin	N/A	no	0.964	0.557	0.333	1e-79
Q9FL28	1173	LRR receptor-like serine/	no	no	0.921	0.503	0.333	7e-77
C0LGR3	1091	Probable LRR receptor-lik	no	no	0.934	0.549	0.344	7e-76
Q9LHP4	1141	Receptor-like protein kin	no	no	0.884	0.496	0.335	9e-76
Q9LVP0	1102	Probable leucine-rich rep	no	no	0.953	0.554	0.336	5e-74

>sp|Q9LP24|Y1571_ARATH Probable leucine-rich repeat receptor-like protein kinase At1g35710 OS=Arabidopsis thaliana GN=At1g35710 PE=2 SV=1

 Score =  375 bits (964), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 248/624 (39%), Positives = 338/624 (54%), Gaps = 25/624 (4%)

Query: 23  EAKALLNWKSSLV-SSSLPSWTA---INSNSGPCNWNGIQCNEVGSISEINLANSGLDGT 78
           EA ALL WKS+   SS L SW      N++    +W G+ CN  GSI E+NL N+G++GT
Sbjct: 33  EANALLKWKSTFTNSSKLSSWVHDANTNTSFSCTSWYGVSCNSRGSIEELNLTNTGIEGT 92

Query: 79  LDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDL 138
              F F +  NL  ++L+MN L G+IP   GN +KLI  DLS+N+LT  I P +G L +L
Sbjct: 93  FQDFPFISLSNLAYVDLSMNLLSGTIPPQFGNLSKLIYFDLSTNHLTGEISPSLGNLKNL 152

Query: 139 RVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEK 198
            VL L+ N LT  IP +L N+++   L +  N L    P     + +L  L+L  N L  
Sbjct: 153 TVLYLHQNYLTSVIPSELGNMESMTDLALSQNKLTGSIPSSLGNLKNLMVLYLYENYLTG 212

Query: 199 -FPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPK 257
             P  +     +  L LS N + G IP   L +L+NL  L L +N   G IP EI     
Sbjct: 213 VIPPELGNMESMTDLALSQNKLTGSIP-STLGNLKNLMVLYLYENYLTGVIPPEIGNMES 271

Query: 258 LRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLN 317
           + +L L QNKLTG+IP  +G L NL +L   +N   G IP  LGN+  +  L L +  L 
Sbjct: 272 MTNLALSQNKLTGSIPSSLGNLKNLTLLSLFQNYLTGGIPPKLGNIESMIDLELSNNKLT 331

Query: 318 SSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDL 377
            SIP  LG   NLT L L  N LTG +P          ELG     +  +I LQL  N L
Sbjct: 332 GSIPSSLGNLKNLTILYLYENYLTGVIP---------PELG----NMESMIDLQLNNNKL 378

Query: 378 SGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLS 437
           +G +P   G L  L YLYL+ N  +G IPQ++GN+ ++ +L L+ N   GS+P + GN +
Sbjct: 379 TGSIPSSFGNLKNLTYLYLYLNYLTGVIPQELGNMESMINLDLSQNKLTGSVPDSFGNFT 438

Query: 438 SLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLT 497
            L  L L  N L+G +PP + NS        L  +    NNF+G  P  +C+G  L  ++
Sbjct: 439 KLESLYLRVNHLSGAIPPGVANSS------HLTTLILDTNNFTGFFPETVCKGRKLQNIS 492

Query: 498 ANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTS 557
            + N L GPIP+SL +C  L R R   N+  GDI  A GIYPDL +ID   N+  G ++S
Sbjct: 493 LDYNHLEGPIPKSLRDCKSLIRARFLGNKFTGDIFEAFGIYPDLNFIDFSHNKFHGEISS 552

Query: 558 NWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLN 617
           NW K   L    +S N I G IP E+ N+T L  LD+  N L G++P  +   + L RL 
Sbjct: 553 NWEKSPKLGALIMSNNNITGAIPTEIWNMTQLVELDLSTNNLFGELPEAIGNLTNLSRLR 612

Query: 618 LRRNQLSDKIPAEIGKLSRLQYLD 641
           L  NQLS ++PA +  L+ L+ LD
Sbjct: 613 LNGNQLSGRVPAGLSFLTNLESLD 636

Arabidopsis thaliana (taxid: 3702)
EC: 2EC: .EC: 7EC: .EC: 1EC: 1EC: .EC: 1

>sp|C0LGQ5|GSO1_ARATH LRR receptor-like serine/threonine-protein kinase GSO1 OS=Arabidopsis thaliana GN=GSO1 PE=2 SV=1

 Score =  316 bits (809), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 238/660 (36%), Positives = 329/660 (49%), Gaps = 55/660 (8%)

Query: 25  KALLNWKSSLVSSS-----LPSWTAINSNSGPCNWNGIQCNEVG--SISEINLANSGLDG 77
           + LL  K SLV++      L  W + N N   C+W G+ C+  G   +  +NL   GL G
Sbjct: 28  QTLLEVKKSLVTNPQEDDPLRQWNSDNINY--CSWTGVTCDNTGLFRVIALNLTGLGLTG 85

Query: 78  TLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSD 137
           ++  + F  F NL  L+L+ NNLVG IP  + N T L  L L SN LT  IP ++G L +
Sbjct: 86  SISPW-FGRFDNLIHLDLSSNNLVGPIPTALSNLTSLESLFLFSNQLTGEIPSQLGSLVN 144

Query: 138 LRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLE 197
           +R L + +N L G IP  L NL N  +L + +  L  P P +   +  +  L L  N LE
Sbjct: 145 IRSLRIGDNELVGDIPETLGNLVNLQMLALASCRLTGPIPSQLGRLVRVQSLILQDNYLE 204

Query: 198 -KFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFP 256
              P+ +  CS L     ++N++ G IP E L  LENLE LNL  NS  GEIP ++    
Sbjct: 205 GPIPAELGNCSDLTVFTAAENMLNGTIPAE-LGRLENLEILNLANNSLTGEIPSQLGEMS 263

Query: 257 KLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRR----------- 305
           +L++L L  N+L G IP  +  L NL+ L+   N   G IP    N+ +           
Sbjct: 264 QLQYLSLMANQLQGLIPKSLADLGNLQTLDLSANNLTGEIPEEFWNMSQLLDLVLANNHL 323

Query: 306 --------------LQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASL 351
                         L++L L    L+  IP EL  C +L  L+LS N+L GS+P +L  L
Sbjct: 324 SGSLPKSICSNNTNLEQLVLSGTQLSGEIPVELSKCQSLKQLDLSNNSLAGSIPEALFEL 383

Query: 352 RQISELGISNNQLSEIIS-----------LQLQMNDLSGKLPPEIGLLPKLEYLYLFDNK 400
            ++++L + NN L   +S           L L  N+L GKLP EI  L KLE L+L++N+
Sbjct: 384 VELTDLYLHNNTLEGTLSPSISNLTNLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENR 443

Query: 401 FSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNS 460
           FSG IPQ+IGN T+L  + +  N F G IP +IG L  L  L L  N+L G LP  +GN 
Sbjct: 444 FSGEIPQEIGNCTSLKMIDMFGNHFEGEIPPSIGRLKELNLLHLRQNELVGGLPASLGNC 503

Query: 461 KSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRV 520
                   L  +  + N  SG +P        L  L    N L G +P+SL +   LTR+
Sbjct: 504 HQ------LNILDLADNQLSGSIPSSFGFLKGLEQLMLYNNSLQGNLPDSLISLRNLTRI 557

Query: 521 RLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIP 580
            L  NRL+G I    G    L + D+ +N     +    G   NL   R+  N++ G IP
Sbjct: 558 NLSHNRLNGTIHPLCGSSSYLSF-DVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTGKIP 616

Query: 581 AELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIPAEIGKLSRLQYL 640
             LG +  L  LD+  N LTG IP QL     L  ++L  N LS  IP  +GKLS+L  L
Sbjct: 617 WTLGKIRELSLLDMSSNALTGTIPLQLVLCKKLTHIDLNNNFLSGPIPPWLGKLSQLGEL 676

Together with GSO2, receptor-like serine/threonine-kinase required during the development of the epidermal surface in embryos and cotyledons.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8VZG8|Y4885_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g08850 OS=Arabidopsis thaliana GN=At4g08850 PE=1 SV=3

 Score =  308 bits (789), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 227/658 (34%), Positives = 330/658 (50%), Gaps = 51/658 (7%)

Query: 4   RTLHFLILSYVVVQIS-----AQKEAKALLNWKSSLV----SSSLPSWTAINSNSGPCNW 54
           R L  L++  +V+  S       +EA ALL WKS+      SS L SW   N++S   +W
Sbjct: 26  RDLQVLLIISIVLSCSFAVSATVEEANALLKWKSTFTNQTSSSKLSSWVNPNTSSFCTSW 85

Query: 55  NGIQCNEVGSISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKL 114
            G+ C+ +GSI  +NL N+G++GT + F FS+ PNLT ++L+MN   G+I    G  +KL
Sbjct: 86  YGVACS-LGSIIRLNLTNTGIEGTFEDFPFSSLPNLTFVDLSMNRFSGTISPLWGRFSKL 144

Query: 115 ILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLED 174
              DLS N L   IPPE+G LS+L  L L  N L G IP ++  L     + I  N L  
Sbjct: 145 EYFDLSINQLVGEIPPELGDLSNLDTLHLVENKLNGSIPSEIGRLTKVTEIAIYDNLLTG 204

Query: 175 PDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENL 234
           P P  F  +  L +L+L          FI             N + G IP E + +L NL
Sbjct: 205 PIPSSFGNLTKLVNLYL----------FI-------------NSLSGSIPSE-IGNLPNL 240

Query: 235 EYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHG 294
             L L +N+  G+IP        +  L + +N+L+G IP EIG ++ L+ L  H N   G
Sbjct: 241 RELCLDRNNLTGKIPSSFGNLKNVTLLNMFENQLSGEIPPEIGNMTALDTLSLHTNKLTG 300

Query: 295 LIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQI 354
            IPS+LGN++ L  L+L    LN SIP ELG   ++  LE+S N LTG +P S   L  +
Sbjct: 301 PIPSTLGNIKTLAVLHLYLNQLNGSIPPELGEMESMIDLEISENKLTGPVPDSFGKLTAL 360

Query: 355 SELGISNNQLS-----------EIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSG 403
             L + +NQLS           E+  LQL  N+ +G LP  I    KLE L L DN F G
Sbjct: 361 EWLFLRDNQLSGPIPPGIANSTELTVLQLDTNNFTGFLPDTICRGGKLENLTLDDNHFEG 420

Query: 404 PIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSD 463
           P+P+ + +  +L  ++   N F+G I    G   +L  + LS+N   G L      S+  
Sbjct: 421 PVPKSLRDCKSLIRVRFKGNSFSGDISEAFGVYPTLNFIDLSNNNFHGQLSANWEQSQK- 479

Query: 464 FGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLE 523
                L     S N+ +G +PP I     L  L  + N++ G +PES+ N   +++++L 
Sbjct: 480 -----LVAFILSNNSITGAIPPEIWNMTQLSQLDLSSNRITGELPESISNINRISKLQLN 534

Query: 524 QNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAEL 583
            NRL G I + + +  +L+Y+DL  N+ S  +         L    +S N +   IP  L
Sbjct: 535 GNRLSGKIPSGIRLLTNLEYLDLSSNRFSSEIPPTLNNLPRLYYMNLSRNDLDQTIPEGL 594

Query: 584 GNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIPAEIGKLSRLQYLD 641
             L+ LQ LD+  NQL G+I +Q      L RL+L  N LS +IP     +  L ++D
Sbjct: 595 TKLSQLQMLDLSYNQLDGEISSQFRSLQNLERLDLSHNNLSGQIPPSFKDMLALTHVD 652

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9SHI2|Y1723_ARATH Leucine-rich repeat receptor-like serine/threonine-protein kinase At1g17230 OS=Arabidopsis thaliana GN=At1g17230 PE=2 SV=2

 Score =  305 bits (781), Expect = 8e-82,   Method: Compositional matrix adjust.
 Identities = 234/672 (34%), Positives = 328/672 (48%), Gaps = 62/672 (9%)

Query: 11  LSYVVVQISAQKEAKALLNWKSSLVSSS--LPSWTAINSNSGPCNWNGIQCNEVGSISEI 68
            S+++V+ S  +E + LL +K+ L  S+  L SW  ++SN  PCNW GI C  + +++ +
Sbjct: 16  FSFILVR-SLNEEGRVLLEFKAFLNDSNGYLASWNQLDSN--PCNWTGIACTHLRTVTSV 72

Query: 69  NLANSGLDGTLDGF-----------------------DFSAFPNLTALNLNMNNLVGSIP 105
           +L    L GTL                          D S   +L  L+L  N   G IP
Sbjct: 73  DLNGMNLSGTLSPLICKLHGLRKLNVSTNFISGPIPQDLSLCRSLEVLDLCTNRFHGVIP 132

Query: 106 AGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLL 165
             +     L  L L  N L   IP +IG LS L+ L++Y+N+LTG IP  ++ L+   ++
Sbjct: 133 IQLTMIITLKKLYLCENYLFGSIPRQIGNLSSLQELVIYSNNLTGVIPPSMAKLRQLRII 192

Query: 166 RIGANYLEDPDPVKFKGMASLTDLWLDYNLLE-KFPSFIAECSKLMFLDLSDNLIMGHIP 224
           R G N      P +  G  SL  L L  NLLE   P  + +   L  L L  N + G IP
Sbjct: 193 RAGRNGFSGVIPSEISGCESLKVLGLAENLLEGSLPKQLEKLQNLTDLILWQNRLSGEIP 252

Query: 225 IEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEI 284
              + ++  LE L L +N F G IPREI    K++ L L  N+LTG IP EIG L +   
Sbjct: 253 -PSVGNISRLEVLALHENYFTGSIPREIGKLTKMKRLYLYTNQLTGEIPREIGNLIDAAE 311

Query: 285 LEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSL 344
           ++F EN   G IP   G++  L+ L+L    L   IP+ELG    L  L+LSIN L G++
Sbjct: 312 IDFSENQLTGFIPKEFGHILNLKLLHLFENILLGPIPRELGELTLLEKLDLSINRLNGTI 371

Query: 345 PLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGP 404
           P  L  L               ++ LQL  N L GK+PP IG       L +  N  SGP
Sbjct: 372 PQELQFL-------------PYLVDLQLFDNQLEGKIPPLIGFYSNFSVLDMSANSLSGP 418

Query: 405 IPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEI------- 457
           IP        L  L L +N  +G+IP  +    SL KL L  NQLTG+LP E+       
Sbjct: 419 IPAHFCRFQTLILLSLGSNKLSGNIPRDLKTCKSLTKLMLGDNQLTGSLPIELFNLQNLT 478

Query: 458 ----------GNSKSDFGP-RFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGP 506
                     GN  +D G  + L  +  + NNF+G++PP I     ++    + N+L G 
Sbjct: 479 ALELHQNWLSGNISADLGKLKNLERLRLANNNFTGEIPPEIGNLTKIVGFNISSNQLTGH 538

Query: 507 IPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLS 566
           IP+ L +C  + R+ L  N+  G I   LG    L+ + L DN+L+G +  ++G  T L 
Sbjct: 539 IPKELGSCVTIQRLDLSGNKFSGYIAQELGQLVYLEILRLSDNRLTGEIPHSFGDLTRLM 598

Query: 567 NFRISGNRIKGGIPAELGNLTYLQ-NLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSD 625
             ++ GN +   IP ELG LT LQ +L+I  N L+G IP  L     L  L L  N+LS 
Sbjct: 599 ELQLGGNLLSENIPVELGKLTSLQISLNISHNNLSGTIPDSLGNLQMLEILYLNDNKLSG 658

Query: 626 KIPAEIGKLSRL 637
           +IPA IG L  L
Sbjct: 659 EIPASIGNLMSL 670

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGV1|RCH1_ARATH LRR receptor-like serine/threonine-protein kinase RCH1 OS=Arabidopsis thaliana GN=RCH1 PE=2 SV=1

 Score =  303 bits (777), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 222/640 (34%), Positives = 337/640 (52%), Gaps = 28/640 (4%)

Query: 9   LILSYVVVQISAQK-EAKALLNWKSSLVSSSLPSWTAIN-SNSGPCNWNGIQCNEVGS-- 64
           L L++ +   SA   E  AL++W  S  S     ++  N S+S PC W  I C+   +  
Sbjct: 24  LFLAFFISSTSASTNEVSALISWLHSSNSPPPSVFSGWNPSDSDPCQWPYITCSSSDNKL 83

Query: 65  ISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNL 124
           ++EIN+ +  L       + S+F +L  L ++  NL G+I + IG+ ++LI++DLSSN+L
Sbjct: 84  VTEINVVSVQLALPFPP-NISSFTSLQKLVISNTNLTGAISSEIGDCSELIVIDLSSNSL 142

Query: 125 TNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMA 184
              IP  +G L +L+ L L +N LTG+IP +L +  +   L I  NYL +  P++   ++
Sbjct: 143 VGEIPSSLGKLKNLQELCLNSNGLTGKIPPELGDCVSLKNLEIFDNYLSENLPLELGKIS 202

Query: 185 SLTDLWLDYN--LLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKN 242
           +L  +    N  L  K P  I  C  L  L L+   I G +P+  L  L  L+ L++   
Sbjct: 203 TLESIRAGGNSELSGKIPEEIGNCRNLKVLGLAATKISGSLPV-SLGQLSKLQSLSVYST 261

Query: 243 SFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGN 302
              GEIP+E+    +L +L L  N L+GT+P E+G L NLE +   +N  HG IP  +G 
Sbjct: 262 MLSGEIPKELGNCSELINLFLYDNDLSGTLPKELGKLQNLEKMLLWQNNLHGPIPEEIGF 321

Query: 303 LRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNN 362
           ++ L  ++L     + +IPK  G  +NL  L LS NN+TGS+P  L++            
Sbjct: 322 MKSLNAIDLSMNYFSGTIPKSFGNLSNLQELMLSSNNITGSIPSILSNC----------- 370

Query: 363 QLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLAN 422
             ++++  Q+  N +SG +PPEIGLL +L     + NK  G IP ++    NL  L L+ 
Sbjct: 371 --TKLVQFQIDANQISGLIPPEIGLLKELNIFLGWQNKLEGNIPDELAGCQNLQALDLSQ 428

Query: 423 NFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGK 482
           N+  GS+P+ +  L +L KL L SN ++G +P EIGN  S    R + N        +G+
Sbjct: 429 NYLTGSLPAGLFQLRNLTKLLLISNAISGVIPLEIGNCTSLVRLRLVNN------RITGE 482

Query: 483 LPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQ 542
           +P GI    NL +L  + N L GP+P  + NC  L  + L  N L G +  +L     LQ
Sbjct: 483 IPKGIGFLQNLSFLDLSENNLSGPVPLEISNCRQLQMLNLSNNTLQGYLPLSLSSLTKLQ 542

Query: 543 YIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGK 602
            +D+  N L+G +  + G   +L+   +S N   G IP+ LG+ T LQ LD+  N ++G 
Sbjct: 543 VLDVSSNDLTGKIPDSLGHLISLNRLILSKNSFNGEIPSSLGHCTNLQLLDLSSNNISGT 602

Query: 603 IPAQLFRSSFL-IRLNLRRNQLSDKIPAEIGKLSRLQYLD 641
           IP +LF    L I LNL  N L   IP  I  L+RL  LD
Sbjct: 603 IPEELFDIQDLDIALNLSWNSLDGFIPERISALNRLSVLD 642

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|P93194|RPK1_IPONI Receptor-like protein kinase OS=Ipomoea nil GN=INRPK1 PE=2 SV=2

 Score =  298 bits (762), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 223/669 (33%), Positives = 331/669 (49%), Gaps = 51/669 (7%)

Query: 12  SYVVVQISAQKEAKALL----NWKSSLVSSSLPSWTAINSNSGPCNWNGIQCNEVGSISE 67
           S +    +   +  ALL    +W +S+ S    SW A  S+S PC+W G++C+    +  
Sbjct: 16  SSIYAAFALNSDGAALLSLTRHW-TSIPSDITQSWNA--SDSTPCSWLGVECDRRQFVDT 72

Query: 68  INLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNP 127
           +NL++ G+ G   G + S   +L  + L+ N   GSIP+ +GN + L  +DLSSN+ T  
Sbjct: 73  LNLSSYGISGEF-GPEISHLKHLKKVVLSGNGFFGSIPSQLGNCSLLEHIDLSSNSFTGN 131

Query: 128 IPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLT 187
           IP  +G L +LR L L+ NSL G  P  L ++ +   +    N L    P     M+ LT
Sbjct: 132 IPDTLGALQNLRNLSLFFNSLIGPFPESLLSIPHLETVYFTGNGLNGSIPSNIGNMSELT 191

Query: 188 DLWLDYNLLE-KFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEG 246
            LWLD N      PS +   + L  L L+DN ++G +P+  L +LENL YL++  NS  G
Sbjct: 192 TLWLDDNQFSGPVPSSLGNITTLQELYLNDNNLVGTLPV-TLNNLENLVYLDVRNNSLVG 250

Query: 247 EIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRL 306
            IP +  +  ++  + L  N+ TG +P  +G  ++L           G IPS  G L +L
Sbjct: 251 AIPLDFVSCKQIDTISLSNNQFTGGLPPGLGNCTSLREFGAFSCALSGPIPSCFGQLTKL 310

Query: 307 QRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLS- 365
             L L     +  IP ELG C ++  L+L  N L G +P  L  L Q+  L +  N LS 
Sbjct: 311 DTLYLAGNHFSGRIPPELGKCKSMIDLQLQQNQLEGEIPGELGMLSQLQYLHLYTNNLSG 370

Query: 366 ----------EIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNL 415
                      + SLQL  N+LSG+LP ++  L +L  L L++N F+G IPQ +G  ++L
Sbjct: 371 EVPLSIWKIQSLQSLQLYQNNLSGELPVDMTELKQLVSLALYENHFTGVIPQDLGANSSL 430

Query: 416 FDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFS 475
             L L  N F G IP  + +   L +L L  N L G++P ++G      G   L  +   
Sbjct: 431 EVLDLTRNMFTGHIPPNLCSQKKLKRLLLGYNYLEGSVPSDLG------GCSTLERLILE 484

Query: 476 YNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNAL 535
            NN  G LP  + +  NL++   + N   GPIP SL N   +T + L  N+L G I   L
Sbjct: 485 ENNLRGGLPDFVEKQ-NLLFFDLSGNNFTGPIPPSLGNLKNVTAIYLSSNQLSGSIPPEL 543

Query: 536 GIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIF 595
           G    L++++L  N L G+L S    C  LS    S N + G IP+ LG+LT L  L + 
Sbjct: 544 GSLVKLEHLNLSHNILKGILPSELSNCHKLSELDASHNLLNGSIPSTLGSLTELTKLSLG 603

Query: 596 DNQLTGKIPAQLFRS-----------------------SFLIRLNLRRNQLSDKIPAEIG 632
           +N  +G IP  LF+S                         L  LNL  N+L+ ++P ++G
Sbjct: 604 ENSFSGGIPTSLFQSNKLLNLQLGGNLLAGDIPPVGALQALRSLNLSSNKLNGQLPIDLG 663

Query: 633 KLSRLQYLD 641
           KL  L+ LD
Sbjct: 664 KLKMLEELD 672

Possible role in short-day photoperiod floral induction.

Ipomoea nil (taxid: 35883)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9FL28|FLS2_ARATH LRR receptor-like serine/threonine-protein kinase FLS2 OS=Arabidopsis thaliana GN=FLS2 PE=1 SV=1

 Score =  288 bits (738), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 230/690 (33%), Positives = 321/690 (46%), Gaps = 99/690 (14%)

Query: 5   TLHFLILSYVVVQISAQKEAKALLNWKSSLVSS---SLPSWTAINSNSGPCNWNGIQCNE 61
           TL F      + + S + E +AL ++K+ + +     L  WT I S    CNW GI C+ 
Sbjct: 12  TLTFFFFGIALAKQSFEPEIEALKSFKNGISNDPLGVLSDWTIIGSLR-HCNWTGITCDS 70

Query: 62  VGSISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSS 121
            G +  ++L    L+G L                         PA I N T L +LDL+S
Sbjct: 71  TGHVVSVSLLEKQLEGVLS------------------------PA-IANLTYLQVLDLTS 105

Query: 122 NNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFK 181
           N+ T  IP EIG L++L  L+LY N  +G IP  +  L+N + L +  N L    P +  
Sbjct: 106 NSFTGKIPAEIGKLTELNQLILYLNYFSGSIPSGIWELKNIFYLDLRNNLLSGDVPEEIC 165

Query: 182 GMASLTDLWLDYN-------------------------LLEKFPSFIAECSKLMFLDLSD 216
             +SL  +  DYN                         L    P  I   + L  LDLS 
Sbjct: 166 KTSSLVLIGFDYNNLTGKIPECLGDLVHLQMFVAAGNHLTGSIPVSIGTLANLTDLDLSG 225

Query: 217 NLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEI 276
           N + G IP     +L NL+ L LT+N  EG+IP EI     L  L+L  N+LTG IP E+
Sbjct: 226 NQLTGKIP-RDFGNLLNLQSLVLTENLLEGDIPAEIGNCSSLVQLELYDNQLTGKIPAEL 284

Query: 277 GLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELS 336
           G L  L+ L  ++N     IPSSL  L +L  L L    L   I +E+GF  +L  L L 
Sbjct: 285 GNLVQLQALRIYKNKLTSSIPSSLFRLTQLTHLGLSENHLVGPISEEIGFLESLEVLTLH 344

Query: 337 INNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYL 396
            NN TG  P S+ +LR ++ L +               N++SG+LP ++GLL  L  L  
Sbjct: 345 SNNFTGEFPQSITNLRNLTVLTVG-------------FNNISGELPADLGLLTNLRNLSA 391

Query: 397 FDNKFSGPIPQQIGNLT-----------------------NLFDLQLANNFFNGSIPSTI 433
            DN  +GPIP  I N T                       NL  + +  N F G IP  I
Sbjct: 392 HDNLLTGPIPSSISNCTGLKLLDLSHNQMTGEIPRGFGRMNLTFISIGRNHFTGEIPDDI 451

Query: 434 GNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNL 493
            N S+L  LS++ N LTGTL P IG  +       LR +  SYN+ +G +P  I    +L
Sbjct: 452 FNCSNLETLSVADNNLTGTLKPLIGKLQK------LRILQVSYNSLTGPIPREIGNLKDL 505

Query: 494 IYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSG 553
             L  + N   G IP  + N T L  +R+  N L+G I   +     L  +DL +N+ SG
Sbjct: 506 NILYLHSNGFTGRIPREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSG 565

Query: 554 VLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRS--S 611
            + + + K  +L+   + GN+  G IPA L +L+ L   DI DN LTG IP +L  S  +
Sbjct: 566 QIPALFSKLESLTYLSLQGNKFNGSIPASLKSLSLLNTFDISDNLLTGTIPGELLASLKN 625

Query: 612 FLIRLNLRRNQLSDKIPAEIGKLSRLQYLD 641
             + LN   N L+  IP E+GKL  +Q +D
Sbjct: 626 MQLYLNFSNNLLTGTIPKELGKLEMVQEID 655

Constitutes the pattern-recognition receptor (PPR) that determines the specific perception of flagellin (flg22), a potent elicitor of the defense response to pathogen-associated molecular patterns (PAMPs). Flagellin-binding to the receptor is the first step to initiate the innate immune MAP kinase signaling cascade (MEKK1, MKK4/MKK5 and MPK3/MPK6), resulting in enhanced resistance against pathogens. Binding to the effector AvrPto1 from Pseudomonas syringae blocks the downstream plant immune response.

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|C0LGR3|Y4265_ARATH Probable LRR receptor-like serine/threonine-protein kinase At4g26540 OS=Arabidopsis thaliana GN=At4g26540 PE=1 SV=1

 Score =  285 bits (730), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 224/650 (34%), Positives = 328/650 (50%), Gaps = 51/650 (7%)

Query: 19  SAQKEAKALLNWKSSL--VSSSLPSWTAINSNSGPCNWNGIQCNEVGSISEINLANSGLD 76
           S  ++ +ALL+WKS L     +  SW    +++ PCNW G++CN  G +SEI L    L 
Sbjct: 24  SLDQQGQALLSWKSQLNISGDAFSSWHV--ADTSPCNWVGVKCNRRGEVSEIQLKGMDLQ 81

Query: 77  GTLDGF------------------------DFSAFPNLTALNLNMNNLVGSIPAGIGNAT 112
           G+L                           +   F  L  L+L+ N+L G IP  I    
Sbjct: 82  GSLPVTSLRSLKSLTSLTLSSLNLTGVIPKEIGDFTELELLDLSDNSLSGDIPVEIFRLK 141

Query: 113 KLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANY- 171
           KL  L L++NNL   IP EIG LS L  L+L++N L+G+IP  +  L+N  +LR G N  
Sbjct: 142 KLKTLSLNTNNLEGHIPMEIGNLSGLVELMLFDNKLSGEIPRSIGELKNLQVLRAGGNKN 201

Query: 172 LEDPDPVKFKGMASLTDLWL-DYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTH 230
           L    P +     +L  L L + +L  K P+ I    ++  + +  +L+ G IP +++ +
Sbjct: 202 LRGELPWEIGNCENLVMLGLAETSLSGKLPASIGNLKRVQTIAIYTSLLSGPIP-DEIGY 260

Query: 231 LENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHEN 290
              L+ L L +NS  G IP  I    KL+ L L QN L G IP E+G    L +++F EN
Sbjct: 261 CTELQNLYLYQNSISGSIPTTIGGLKKLQSLLLWQNNLVGKIPTELGNCPELWLIDFSEN 320

Query: 291 LFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLAS 350
           L  G IP S G L  LQ L L    ++ +IP+EL  C  LT LE+  N +TG +P  +++
Sbjct: 321 LLTGTIPRSFGKLENLQELQLSVNQISGTIPEELTNCTKLTHLEIDNNLITGEIPSLMSN 380

Query: 351 LRQISELGISNNQLS-----------EIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDN 399
           LR ++      N+L+           E+ ++ L  N LSG +P EI  L  L  L L  N
Sbjct: 381 LRSLTMFFAWQNKLTGNIPQSLSQCRELQAIDLSYNSLSGSIPKEIFGLRNLTKLLLLSN 440

Query: 400 KFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGN 459
             SG IP  IGN TNL+ L+L  N   GSIPS IGNL +L  + +S N+L G++PP I  
Sbjct: 441 DLSGFIPPDIGNCTNLYRLRLNGNRLAGSIPSEIGNLKNLNFVDISENRLVGSIPPAISG 500

Query: 460 SKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTR 519
            +S      L  +    N+ SG L  G     +L ++  + N L   +P  +   T LT+
Sbjct: 501 CES------LEFLDLHTNSLSGSL-LGTTLPKSLKFIDFSDNALSSTLPPGIGLLTELTK 553

Query: 520 VRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLS-NFRISGNRIKGG 578
           + L +NRL G+I   +     LQ ++LG+N  SG +    G+  +L+ +  +S NR  G 
Sbjct: 554 LNLAKNRLSGEIPREISTCRSLQLLNLGENDFSGEIPDELGQIPSLAISLNLSCNRFVGE 613

Query: 579 IPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIP 628
           IP+   +L  L  LD+  NQLTG +   L     L+ LN+  N  S  +P
Sbjct: 614 IPSRFSDLKNLGVLDVSHNQLTGNLNV-LTDLQNLVSLNISYNDFSGDLP 662

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LHP4|RCH2_ARATH Receptor-like protein kinase 2 OS=Arabidopsis thaliana GN=RCH2 PE=1 SV=1

 Score =  285 bits (729), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 206/614 (33%), Positives = 320/614 (52%), Gaps = 47/614 (7%)

Query: 42  WTAINSNSGPCN-WNGIQCNEVGSISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNL 100
           W +I++   PCN W  I C+  G I++I++ +  L  +L   +  AF +L  L ++  NL
Sbjct: 61  WNSIDNT--PCNNWTFITCSSQGFITDIDIESVPLQLSLPK-NLPAFRSLQKLTISGANL 117

Query: 101 VGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQ 160
            G++P  +G+   L +LDLSSN L   IP  +  L +L  L+L +N LTG+IP       
Sbjct: 118 TGTLPESLGDCLGLKVLDLSSNGLVGDIPWSLSKLRNLETLILNSNQLTGKIP------- 170

Query: 161 NAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNL-I 219
                         PD  K   + SL  +  D  L    P+ + + S L  + +  N  I
Sbjct: 171 --------------PDISKCSKLKSL--ILFDNLLTGSIPTELGKLSGLEVIRIGGNKEI 214

Query: 220 MGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLL 279
            G IP E +    NL  L L + S  G +P  +    KL  L +    ++G IP ++G  
Sbjct: 215 SGQIPSE-IGDCSNLTVLGLAETSVSGNLPSSLGKLKKLETLSIYTTMISGEIPSDLGNC 273

Query: 280 SNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINN 339
           S L  L  +EN   G IP  +G L +L++L L    L   IP+E+G C+NL  ++LS+N 
Sbjct: 274 SELVDLFLYENSLSGSIPREIGQLTKLEQLFLWQNSLVGGIPEEIGNCSNLKMIDLSLNL 333

Query: 340 LTGSLPLSLASLRQISELGISNNQL-----------SEIISLQLQMNDLSGKLPPEIGLL 388
           L+GS+P S+  L  + E  IS+N+            S ++ LQL  N +SG +P E+G L
Sbjct: 334 LSGSIPSSIGRLSFLEEFMISDNKFSGSIPTTISNCSSLVQLQLDKNQISGLIPSELGTL 393

Query: 389 PKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQ 448
            KL   + + N+  G IP  + + T+L  L L+ N   G+IPS +  L +L KL L SN 
Sbjct: 394 TKLTLFFAWSNQLEGSIPPGLADCTDLQALDLSRNSLTGTIPSGLFMLRNLTKLLLISNS 453

Query: 449 LTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIP 508
           L+G +P EIGN  S      L  +   +N  +G++P GI     + +L  + N+L G +P
Sbjct: 454 LSGFIPQEIGNCSS------LVRLRLGFNRITGEIPSGIGSLKKINFLDFSSNRLHGKVP 507

Query: 509 ESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNF 568
           + + +C+ L  + L  N L+G + N +     LQ +D+  NQ SG + ++ G+  +L+  
Sbjct: 508 DEIGSCSELQMIDLSNNSLEGSLPNPVSSLSGLQVLDVSANQFSGKIPASLGRLVSLNKL 567

Query: 569 RISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFL-IRLNLRRNQLSDKI 627
            +S N   G IP  LG  + LQ LD+  N+L+G+IP++L     L I LNL  N+L+ KI
Sbjct: 568 ILSKNLFSGSIPTSLGMCSGLQLLDLGSNELSGEIPSELGDIENLEIALNLSSNRLTGKI 627

Query: 628 PAEIGKLSRLQYLD 641
           P++I  L++L  LD
Sbjct: 628 PSKIASLNKLSILD 641

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q9LVP0|Y5639_ARATH Probable leucine-rich repeat receptor-like protein kinase At5g63930 OS=Arabidopsis thaliana GN=At5g63930 PE=1 SV=1

 Score =  279 bits (713), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 219/651 (33%), Positives = 325/651 (49%), Gaps = 40/651 (6%)

Query: 23  EAKALLNWKSSLVSSS--LPSWTAINSNSGPCNWNGIQCNEVGSISEI---NLANSGLDG 77
           E + LL  KS  V +   L +W +  ++S PC W G+ C+   S  E+   NL++  L G
Sbjct: 30  EGQYLLEIKSKFVDAKQNLRNWNS--NDSVPCGWTGVMCSNYSSDPEVLSLNLSSMVLSG 87

Query: 78  TLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSD 137
            L         +L  L+L+ N L G IP  IGN + L +L L++N     IP EIG L  
Sbjct: 88  KLSP-SIGGLVHLKQLDLSYNGLSGKIPKEIGNCSSLEILKLNNNQFDGEIPVEIGKLVS 146

Query: 138 LRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLE 197
           L  L++YNN ++G +P ++ NL +   L   +N +    P     +  LT      N++ 
Sbjct: 147 LENLIIYNNRISGSLPVEIGNLLSLSQLVTYSNNISGQLPRSIGNLKRLTSFRAGQNMIS 206

Query: 198 -KFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFP 256
              PS I  C  L+ L L+ N + G +P +++  L+ L  + L +N F G IPREI    
Sbjct: 207 GSLPSEIGGCESLVMLGLAQNQLSGELP-KEIGMLKKLSQVILWENEFSGFIPREISNCT 265

Query: 257 KLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGL 316
            L  L L +N+L G IP E+G L +LE L  + N  +G IP  +GNL     ++     L
Sbjct: 266 SLETLALYKNQLVGPIPKELGDLQSLEFLYLYRNGLNGTIPREIGNLSYAIEIDFSENAL 325

Query: 317 NSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISL------ 370
              IP ELG    L  L L  N LTG++P+ L++L+ +S+L +S N L+  I L      
Sbjct: 326 TGEIPLELGNIEGLELLYLFENQLTGTIPVELSTLKNLSKLDLSINALTGPIPLGFQYLR 385

Query: 371 -----QLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFF 425
                QL  N LSG +PP++G    L  L + DN  SG IP  +   +N+  L L  N  
Sbjct: 386 GLFMLQLFQNSLSGTIPPKLGWYSDLWVLDMSDNHLSGRIPSYLCLHSNMIILNLGTNNL 445

Query: 426 NGSIPSTIGNLSSLVKLSLSSNQLTGTLP----PEIGNSKSDFG--------PRFLRNVS 473
           +G+IP+ I    +LV+L L+ N L G  P     ++  +  + G        PR + N S
Sbjct: 446 SGNIPTGITTCKTLVQLRLARNNLVGRFPSNLCKQVNVTAIELGQNRFRGSIPREVGNCS 505

Query: 474 ------FSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRL 527
                  + N F+G+LP  I     L  L  + NKL G +P  ++NC  L R+ +  N  
Sbjct: 506 ALQRLQLADNGFTGELPREIGMLSQLGTLNISSNKLTGEVPSEIFNCKMLQRLDMCCNNF 565

Query: 528 DGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLT 587
            G + + +G    L+ + L +N LSG +    G  + L+  ++ GN   G IP ELG+LT
Sbjct: 566 SGTLPSEVGSLYQLELLKLSNNNLSGTIPVALGNLSRLTELQMGGNLFNGSIPRELGSLT 625

Query: 588 YLQ-NLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIPAEIGKLSRL 637
            LQ  L++  N+LTG+IP +L     L  L L  N LS +IP+    LS L
Sbjct: 626 GLQIALNLSYNKLTGEIPPELSNLVMLEFLLLNNNNLSGEIPSSFANLSSL 676

Arabidopsis thaliana (taxid: 3702)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	641
224129576	1220	predicted protein [Populus trichocarpa]	0.996	0.523	0.652	0.0
359480046	1219	PREDICTED: probable LRR receptor-like se	0.990	0.520	0.454	1e-150
359480048	1219	PREDICTED: probable LRR receptor-like se	1.0	0.525	0.451	1e-150
225438015	1219	PREDICTED: probable LRR receptor-like se	1.0	0.525	0.451	1e-149
225438011	1132	PREDICTED: probable leucine-rich repeat	0.971	0.550	0.453	1e-146
356570668	1230	PREDICTED: probable LRR receptor-like se	0.993	0.517	0.427	1e-142
356503631	1228	PREDICTED: probable LRR receptor-like se	1.0	0.521	0.423	1e-138
255571222	1224	receptor protein kinase, putative [Ricin	0.971	0.508	0.416	1e-135
224070124	1202	predicted protein [Populus trichocarpa]	0.968	0.516	0.434	1e-133
224103093	1178	predicted protein [Populus trichocarpa]	0.968	0.527	0.428	1e-132

>gi|224129576|ref|XP_002320620.1| predicted protein [Populus trichocarpa] gi|222861393|gb|EEE98935.1| predicted protein [Populus trichocarpa]

 Score =  823 bits (2127), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 452/693 (65%), Positives = 521/693 (75%), Gaps = 54/693 (7%)

Query: 2   VHRTLHFLILSYVVVQISAQKEAKALLNWKSSLVSSSLPSWTAINSNSGPCNWNGIQCNE 61
           + R  HFLILS   V I+AQ+EA+ LLNWK+SL   +LPSWT +NS+S PCNW GI+C+ 
Sbjct: 5   LQRIFHFLILSSAFVLITAQREAETLLNWKNSLNFPTLPSWT-LNSSSSPCNWTGIRCSG 63

Query: 62  VGSISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSS 121
            GSI EINL NSGLDGTLD FD S+FPNL++LNLN+NNLVG IP+GIGNATKLI LDLSS
Sbjct: 64  EGSIIEINLENSGLDGTLDRFDSSSFPNLSSLNLNLNNLVGDIPSGIGNATKLISLDLSS 123

Query: 122 NNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFK 181
           NN TN IPPEIG L +L+VL LYNNSLTG IPHQLSNLQ  WLL + ANYL DPDPV+FK
Sbjct: 124 NNFTNQIPPEIGNLKELQVLRLYNNSLTGPIPHQLSNLQKLWLLDLSANYLRDPDPVQFK 183

Query: 182 GMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTK 241
           GMASLT+L L Y LLE  P+FIAEC  L+FLDLSDNLI G IP+  L+ L+ LE+LNLTK
Sbjct: 184 GMASLTELRLSYILLEAVPAFIAECPNLIFLDLSDNLITGQIPMPLLSRLKRLEFLNLTK 243

Query: 242 NSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLG 301
           NS EG +   I  F  LRHL+LG NKL GTIP EIGLLSNLE+LE HEN F G +PSS+G
Sbjct: 244 NSVEGPLSTNIGNFRNLRHLRLGMNKLNGTIPYEIGLLSNLEVLELHENGFDGPMPSSVG 303

Query: 302 NLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISN 361
           NLR L+ LNLK +GLNSSIP+ELG C+NLT+LELS N+L G+LPLS+ASL QI E GIS+
Sbjct: 304 NLRMLRNLNLKLSGLNSSIPEELGLCSNLTYLELSSNSLIGALPLSMASLTQIREFGISD 363

Query: 362 NQL------------SEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQI 409
           N+L            SE++SLQLQ+N+ SGK+PP+IG L KL+ LYLF N+ SGPIP +I
Sbjct: 364 NKLSGNIHPSLLSNWSELVSLQLQINNFSGKVPPQIGTLHKLKLLYLFQNRLSGPIPPEI 423

Query: 410 GNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKS------- 462
           GNL+NL +LQLA+NFF GSIP TIGNLSSL KL L  NQL G LPPE+GN KS       
Sbjct: 424 GNLSNLIELQLADNFFTGSIPPTIGNLSSLTKLILPYNQLNGKLPPELGNIKSLEELDLS 483

Query: 463 ----------------------------------DFGPRFLRNVSFSYNNFSGKLPPGIC 488
                                             DFGP FLRN +FSYNNFSGKLPPGIC
Sbjct: 484 ENDLQGTLPLSITGLRNLNLFYVASNNFSGSIPEDFGPDFLRNATFSYNNFSGKLPPGIC 543

Query: 489 RGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGD 548
            GG LIYL AN N LVGPIP SL NCTGLTRVRLEQN LDGDI+NA G+YP+L+YIDLGD
Sbjct: 544 NGGKLIYLAANRNNLVGPIPSSLRNCTGLTRVRLEQNLLDGDISNAFGMYPNLEYIDLGD 603

Query: 549 NQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLF 608
           N+LSG+L+SNWG+CT LSNFRI+GN + G IP ELGNLT LQNLD+  NQL GKIP +LF
Sbjct: 604 NRLSGMLSSNWGQCTILSNFRIAGNIMSGNIPPELGNLTELQNLDLSGNQLIGKIPIELF 663

Query: 609 RSSFLIRLNLRRNQLSDKIPAEIGKLSRLQYLD 641
            SS L R NL  NQLS  IP E+G LS+LQYLD
Sbjct: 664 SSSKLNRFNLSNNQLSGHIPEEVGMLSQLQYLD 696

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480046|ref|XP_002270822.2| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  540 bits (1390), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 317/698 (45%), Positives = 427/698 (61%), Gaps = 63/698 (9%)

Query: 6   LHFLILSYVVVQI--SAQKEAKALLNWKSSLVSSSL--PSWTAINSNSGPCNWNGIQCNE 61
           +H L L+ + ++I  S   EA+AL+ WK+SL+SS     SW+  N  +  CNW GI C+ 
Sbjct: 12  IHILFLALLPLKITTSPTTEAEALIKWKNSLISSPPLNSSWSLTNIGN-LCNWTGIACHS 70

Query: 62  VGSISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNN-LVGSIPAGIGNATKLILLDLS 120
            GSIS INL+ + L+GTL  FDF +FPNLT  NL+ N+ L GSIP+ I N +KL  LDLS
Sbjct: 71  TGSISVINLSETQLEGTLAQFDFGSFPNLTGFNLSTNSKLNGSIPSTICNLSKLTFLDLS 130

Query: 121 SNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKF 180
            N     I  EIG L++L  L  Y+N   G IP+Q++NLQ  W L +G+NYL+ PD  KF
Sbjct: 131 HNFFDGNITSEIGGLTELLYLSFYDNYFVGTIPYQITNLQKMWYLDLGSNYLQSPDWSKF 190

Query: 181 KGMASLTDLWLDYN-LLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNL 239
             M  LT L  +YN L  +FP FI +C  L +LDL+DN + G IP     +L  LE+L+L
Sbjct: 191 SSMPLLTRLSFNYNELASEFPGFITDCWNLTYLDLADNQLTGAIPESVFGNLGKLEFLSL 250

Query: 240 TKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSS 299
           T NSF G +   I    KL+ L+LG N+ +G IP+EIG LS+L++LE + N F G IPSS
Sbjct: 251 TDNSFRGPLSSNISRLSKLQKLRLGTNQFSGPIPEEIGTLSDLQMLEMYNNSFEGQIPSS 310

Query: 300 LGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGI 359
           +G LR+LQ L+LKS  LNSSIP ELG C NLTFL +++N+L+G +PLS  +  +IS LG+
Sbjct: 311 IGQLRKLQILDLKSNALNSSIPSELGSCTNLTFLAVAVNSLSGVIPLSFTNFNKISALGL 370

Query: 360 SNNQLS------------EIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQ 407
           S+N LS            E+ SLQ+Q N+ +GK+P EIGLL KL YL+L +N F+G IP 
Sbjct: 371 SDNSLSGEISPDFITNWTELTSLQIQNNNFTGKIPSEIGLLEKLNYLFLCNNGFNGSIPS 430

Query: 408 QIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKS----- 462
           +IGNL  L  L L+ N F+G IP    NL+ L  L L  N L+GT+PPEIGN  S     
Sbjct: 431 EIGNLKELLKLDLSKNQFSGPIPPVEWNLTKLELLQLYENNLSGTVPPEIGNLTSLKVLD 490

Query: 463 ------------------------------------DFGPRFLR--NVSFSYNNFSGKLP 484
                                               + G   L+  +VSF+ N+FSG+LP
Sbjct: 491 LSTNKLLGELPETLSILNNLEKLSVFTNNFSGTIPIELGKNSLKLMHVSFANNSFSGELP 550

Query: 485 PGICRGGNLIYLTAN-VNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQY 543
           PG+C G  L +LT N  N   GP+P+ L NCTGLTRVRLE N+  GDI+ A G++P L +
Sbjct: 551 PGLCNGFALQHLTVNGGNNFTGPLPDCLRNCTGLTRVRLEGNQFTGDISKAFGVHPSLVF 610

Query: 544 IDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKI 603
           + L  N+ SG L+  WG+C  L++ ++ GN+I G IPAELG L+ L+ L +  N+L+G+I
Sbjct: 611 LSLSGNRFSGELSPEWGECQKLTSLQVDGNKISGVIPAELGKLSQLRVLSLDSNELSGQI 670

Query: 604 PAQLFRSSFLIRLNLRRNQLSDKIPAEIGKLSRLQYLD 641
           P  L   S L  L+L +N L+  IP  IG L+ L YL+
Sbjct: 671 PVALANLSQLFNLSLGKNNLTGDIPQFIGTLTNLNYLN 708

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|359480048|ref|XP_003632391.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  537 bits (1384), Expect = e-150,   Method: Compositional matrix adjust.
 Identities = 319/706 (45%), Positives = 431/706 (61%), Gaps = 65/706 (9%)

Query: 1   MVHRT----LHFLILSYVVVQI--SAQKEAKALLNWKSSLVSSSLPSWTAINSNSGP-CN 53
           M+H      +H L L+ + ++I  S   EA+AL+ WK+SL+SSS  + +   +N G  CN
Sbjct: 3   MIHSAPLFLIHILSLALLPLKITTSPTTEAEALIKWKNSLISSSPLNSSWSLTNIGNLCN 62

Query: 54  WNGIQCNEVGSISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNN-LVGSIPAGIGNAT 112
           W GI C+  GS++ INL+ + L+GTL  FDF +FPNLT  NL+ N+ L GSIP+ I N +
Sbjct: 63  WTGIACDTTGSVTVINLSETELEGTLAQFDFGSFPNLTGFNLSSNSKLNGSIPSTIYNLS 122

Query: 113 KLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYL 172
           KL  LDLS N     I  EIG L++L  L  Y+N L G IP+Q++NLQ  W L +G+NYL
Sbjct: 123 KLTFLDLSHNFFDGNITSEIGGLTELLYLSFYDNYLVGTIPYQITNLQKMWYLDLGSNYL 182

Query: 173 EDPDPVKFKGMASLTDLWLDYN-LLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHL 231
           + PD  KF  M  LT L  +YN L+ +FP FI +C  L +LDL+ N + G IP    ++L
Sbjct: 183 QSPDWSKFSSMPLLTRLSFNYNELVSEFPGFITDCRNLTYLDLAQNQLTGAIPESVFSNL 242

Query: 232 ENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENL 291
             LE+LN T NSF+G +   I    KL++L+LG+N+ +G+IP+EIG LS+LEILE + N 
Sbjct: 243 GKLEFLNFTDNSFQGPLSSNISRLSKLQNLRLGRNQFSGSIPEEIGTLSDLEILEMYNNS 302

Query: 292 FHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASL 351
           F G IPSS+G LR+LQ L+++   LNS IP ELG C NLTFL L++N+L G +P S  +L
Sbjct: 303 FEGQIPSSIGQLRKLQILDIQRNALNSKIPSELGSCTNLTFLSLAVNSLYGVIPSSFTNL 362

Query: 352 RQISELGISNNQLS------------EIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDN 399
            +ISELG+S+N LS            E+ISLQ+Q N  +GK+P EIGLL KL YL+L++N
Sbjct: 363 NKISELGLSDNFLSGEISPYFITNWTELISLQVQNNSFTGKIPSEIGLLEKLNYLFLYNN 422

Query: 400 KFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGN 459
             SG IP +IGNL +L  L L+ N  +G IP    NL+ L  L L  N LTGT+PPEIGN
Sbjct: 423 MLSGAIPSEIGNLKDLLQLDLSQNQLSGPIPVVEWNLTQLTTLHLYENNLTGTIPPEIGN 482

Query: 460 -----------------------------SKSDFGPRF--------------LRNVSFSY 476
                                          S F   F              L  VSFS 
Sbjct: 483 LTSLTVLDLNTNKLHGELPETLSLLNNLERLSVFTNNFSGTIPTELGKNSLNLMYVSFSN 542

Query: 477 NNFSGKLPPGICRGGNLIYLTAN-VNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNAL 535
           N+FSG+LPPG+C G  L YLT N  N   GP+P+ L NCTGLTRVRLE N+  G I+ A 
Sbjct: 543 NSFSGELPPGLCNGLALQYLTVNGGNNFTGPLPDCLRNCTGLTRVRLEGNQFTGGISEAF 602

Query: 536 GIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIF 595
           G++P L ++ L  N+ SG ++  WG+C  L++ ++ GN+I G IPAELG L+ L  L + 
Sbjct: 603 GVHPSLVFLSLSGNRFSGEISPEWGECQKLTSLQVDGNKISGEIPAELGKLSQLGVLSLD 662

Query: 596 DNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIPAEIGKLSRLQYLD 641
            N+L+G+IP +L   S L  L+L +N L+  IP  IG L+ L YL+
Sbjct: 663 SNELSGQIPVELANLSQLFNLSLSKNHLTGDIPQFIGTLTNLNYLN 708

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438015|ref|XP_002270968.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Vitis vinifera]

 Score =  534 bits (1375), Expect = e-149,   Method: Compositional matrix adjust.
 Identities = 319/706 (45%), Positives = 433/706 (61%), Gaps = 65/706 (9%)

Query: 1   MVHRT------LHFLILSYVVVQISAQKEAKALLNWKSSLVSSSLPSWTAINSNSGP-CN 53
           M HR       + FL+L  + V  S+  EA+AL+ WK+SL+SSSL + +   +N+G  CN
Sbjct: 3   MTHRAPLFLIPILFLVLLPLKVTSSSTTEAEALIKWKNSLISSSLLNSSWSLTNTGNLCN 62

Query: 54  WNGIQCNEVGSISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNN-LVGSIPAGIGNAT 112
           W GI C+  GS++ INL+ + L+GTL  FDF +FPNLT  NL+ N+ L GSIP+ I N +
Sbjct: 63  WTGIACDTTGSVTVINLSETELEGTLAQFDFGSFPNLTGFNLSSNSKLNGSIPSTIYNLS 122

Query: 113 KLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYL 172
           KL  LDLS N     I  EIG L++L  L  Y+N L G IP+Q++NLQ  W L +G+NYL
Sbjct: 123 KLTFLDLSHNFFDGNITSEIGGLTELLYLSFYDNYLVGTIPYQITNLQKMWYLDLGSNYL 182

Query: 173 EDPDPVKFKGMASLTDLWLDYNLL-EKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHL 231
           + PD  KF  M  LT L  +YN L  +FP FI +C  L +LDL+ N + G IP    ++L
Sbjct: 183 QSPDWSKFSSMPLLTRLSFNYNTLASEFPGFITDCWNLTYLDLAQNQLTGAIPESVFSNL 242

Query: 232 ENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENL 291
             LE+LNLT NSF G +   I    KL++L+LG+N+ +G+IP+EIG LS+LEILE + N 
Sbjct: 243 GKLEFLNLTDNSFRGPLSSNISRLSKLQNLRLGRNQFSGSIPEEIGTLSDLEILEMYNNS 302

Query: 292 FHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASL 351
           F G IPSS+G LR+LQ L+++   LNS+IP ELG C NLTFL L++N+L+G +P S  +L
Sbjct: 303 FEGQIPSSIGQLRKLQILDIQRNALNSTIPSELGSCTNLTFLSLAVNSLSGVIPSSFTNL 362

Query: 352 RQISELGISNNQLS------------EIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDN 399
            +ISELG+S+N LS             +ISLQ+Q N  +GK+P EIGLL KL YL+L++N
Sbjct: 363 NKISELGLSDNFLSGEISPYFITNWTGLISLQVQNNSFTGKIPSEIGLLEKLNYLFLYNN 422

Query: 400 KFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGN 459
             SG IP +IGNL +L  L L+ N  +G IP    NL+ L  L L  N LTGT+PPEIGN
Sbjct: 423 MLSGAIPSEIGNLKDLLQLDLSQNQLSGPIPVVEWNLTQLTTLHLYENNLTGTIPPEIGN 482

Query: 460 SKS-----------------------------------------DFGPRFLR--NVSFSY 476
             S                                         + G   L+   VSF+ 
Sbjct: 483 LTSLTVLDLNTNKLHGELPETLSLLNNLERLSVFTNNFSGTIPTELGKNNLKLTLVSFAN 542

Query: 477 NNFSGKLPPGICRGGNLIYLTAN-VNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNAL 535
           N+FSG+LPPG+C G  L  LT N  N   GP+P+ L NCTGLTRVRLE N+  GDI+ A 
Sbjct: 543 NSFSGELPPGLCNGFALQNLTVNGGNNFTGPLPDCLRNCTGLTRVRLEGNQFTGDISKAF 602

Query: 536 GIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIF 595
           G++P L ++ L  N+ SG L+  WG+C  L++ ++ GN+I G +PAELG L++L  L + 
Sbjct: 603 GVHPSLVFLSLSGNRFSGELSPEWGECQKLTSLQVDGNKISGEVPAELGKLSHLGFLSLD 662

Query: 596 DNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIPAEIGKLSRLQYLD 641
            N+L+G+IP  L   S L  L+L +N L+  IP  IG L+ L YL+
Sbjct: 663 SNELSGQIPVALANLSQLFNLSLGKNHLTGDIPQFIGTLTNLNYLN 708

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|225438011|ref|XP_002270684.1| PREDICTED: probable leucine-rich repeat receptor-like protein kinase At5g63930-like [Vitis vinifera]

 Score =  525 bits (1353), Expect = e-146,   Method: Compositional matrix adjust.
 Identities = 309/681 (45%), Positives = 426/681 (62%), Gaps = 58/681 (8%)

Query: 19  SAQKEAKALLNWKSSLVSSSLPSWTAINSNSGP-CNWNGIQCNEVGSISEINLANSGLDG 77
           S + +A+AL+ WK+SL SS+  + +   +N G  CNW GI C+  GSISEINL+++ L G
Sbjct: 24  SPRAQAEALVKWKNSLSSSTSLNSSWSLANLGNLCNWTGIVCDVAGSISEINLSDAKLRG 83

Query: 78  TLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSD 137
           T+  F+ S+FPNLT+LNLN N L GSIP  + N +KL  LD+ SN  +  I  EIG L++
Sbjct: 84  TIVEFNCSSFPNLTSLNLNTNRLKGSIPTAVANLSKLTFLDMGSNLFSGRITSEIGQLTE 143

Query: 138 LRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYN-LL 196
           LR L L++N L G IP+Q++NLQ  W L +G+NYL  PD  +F GM  LT L  ++N L+
Sbjct: 144 LRYLSLHDNYLIGDIPYQITNLQKVWYLDLGSNYLVSPDWSRFLGMPLLTHLSFNFNDLI 203

Query: 197 EKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFP 256
            +FP FI +C  L +LDLS N   G IP    ++L  LE+L L +NSF+G +   I    
Sbjct: 204 LEFPEFITDCRNLTYLDLSQNYFTGPIPEWVFSNLVKLEFLYLFENSFQGLLSPNISRLS 263

Query: 257 KLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGL 316
            L++L+LG+N+ +G IP++IG++S+L+ +E ++N F G IPSS+G LR+LQ L+L   GL
Sbjct: 264 NLQNLRLGRNQFSGPIPEDIGMISDLQNIEMYDNWFEGKIPSSIGQLRKLQGLDLHMNGL 323

Query: 317 NSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLS----------- 365
           NS+IP ELG C +LTFL L++N+LTG LPLSL +L  ISELG+++N LS           
Sbjct: 324 NSTIPTELGLCTSLTFLNLAMNSLTGVLPLSLTNLSMISELGLADNFLSGVISSYLITNW 383

Query: 366 -EIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNF 424
            E+ISLQLQ N  SGK+P EIGLL KL YL+L++N   G IP +IGNL +LF+L L+ N 
Sbjct: 384 TELISLQLQNNLFSGKIPLEIGLLTKLNYLFLYNNTLYGSIPSEIGNLKDLFELDLSENH 443

Query: 425 FNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKS---------------------- 462
            +G IP  +GNL+ L +L L SN L+G +P EIGN KS                      
Sbjct: 444 LSGPIPLAVGNLTKLTRLELFSNNLSGKIPMEIGNLKSLKVLDLNTNKLHGELPETLSLL 503

Query: 463 -------------------DFGPRFLR--NVSFSYNNFSGKLPPGICRGGNLIYLTAN-V 500
                              + G   L+   VSF+ N+FSG+LPPG+C G  L YLT N  
Sbjct: 504 NNLERLSMFTNNFSGTIPTELGKNSLKLMYVSFTNNSFSGELPPGLCNGFALQYLTVNGG 563

Query: 501 NKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWG 560
           N   GP+P+ L NCTGLT+VRLE N+  G+I+   G++  L++I L  N+ SGVL+  WG
Sbjct: 564 NNFTGPLPDCLRNCTGLTQVRLEGNQFTGNISEVFGVHRSLKFISLSGNRFSGVLSPKWG 623

Query: 561 KCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRR 620
           +C NL+  ++ GN+I G IP E  N   L  L + +N L+G+IP +L   S L  L+L  
Sbjct: 624 ECQNLTILQMDGNQISGKIPVEFVNCVLLLILKLRNNDLSGEIPPELGNLSTLNVLDLSS 683

Query: 621 NQLSDKIPAEIGKLSRLQYLD 641
           N LS  IP+ +GKL  LQ L+
Sbjct: 684 NSLSGAIPSNLGKLVALQILN 704

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356570668|ref|XP_003553507.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Glycine max]

 Score =  511 bits (1315), Expect = e-142,   Method: Compositional matrix adjust.
 Identities = 302/707 (42%), Positives = 426/707 (60%), Gaps = 70/707 (9%)

Query: 2   VHRTLH--FLILSYVVVQISAQ--KEAKALLNWKSSLVSSSLP-----SWTAINSNSGPC 52
           VH  L   F  +S + ++I++    EA+AL+ WK+SL  S LP     SW+  N  +  C
Sbjct: 7   VHALLFHIFFFISLLPLKITSSPTTEAEALVKWKNSL--SLLPPSLNSSWSLTNLGN-LC 63

Query: 53  NWNGIQC-NEVGSISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNA 111
           NW+ I C N   ++ EINL+++ + GTL   DF++ PNLT LNLN NN  GSIP+ IGN 
Sbjct: 64  NWDAIACDNTNNTVLEINLSDANITGTLTPLDFASLPNLTKLNLNHNNFEGSIPSAIGNL 123

Query: 112 TKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANY 171
           +KL LLDL +N     +P E+G L +L+ L  YNN+L G IP+QL NL   W + +G+NY
Sbjct: 124 SKLSLLDLGNNLFEETLPNELGQLRELQYLSFYNNNLNGTIPYQLMNLPKVWYMDLGSNY 183

Query: 172 -LEDPDPVKFKGMASLTDLWLDYNLLE-KFPSFIAECSKLMFLDLSDNLIMGHIPIEQLT 229
            +  PD  ++ GM SLT L L  N+   +FPSFI EC  L +LD+S N   G IP    +
Sbjct: 184 FITPPDWSQYSGMPSLTRLGLHLNVFTGEFPSFILECQNLSYLDISQNHWTGTIPESMYS 243

Query: 230 HLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHE 289
           +L  LEYLNLT     G++   +     L+ L++G N   G++P EIGL+S L+ILE + 
Sbjct: 244 NLPKLEYLNLTNTGLIGKLSPNLSMLSNLKELRMGNNMFNGSVPTEIGLISGLQILELNN 303

Query: 290 NLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLA 349
              HG IPSSLG LR L RL+L    LNS+IP ELG CANL+FL L++N+L+G LPLSLA
Sbjct: 304 IFAHGKIPSSLGQLRELWRLDLSINFLNSTIPSELGLCANLSFLSLAVNSLSGPLPLSLA 363

Query: 350 SLRQISELGISNNQLS------------EIISLQLQMNDLSGKLPPEIGLLPKLEYLYLF 397
           +L +ISELG+S+N  S            ++ISLQ+Q N  +G++PP+IGLL K+ +LYL+
Sbjct: 364 NLAKISELGLSDNSFSGQFSASLISNWTQLISLQVQNNSFTGRIPPQIGLLKKINFLYLY 423

Query: 398 DNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEI 457
           +N+FSGPIP +IGNL  + +L L+ N F+G IP T+ NL+++  L+L  N L+GT+P +I
Sbjct: 424 NNQFSGPIPVEIGNLKEMIELDLSQNQFSGPIPLTLWNLTNIQVLNLFFNDLSGTIPMDI 483

Query: 458 GNSKS-----------------------------------------DFGPR--FLRNVSF 474
           GN  S                                         +FG     L ++  
Sbjct: 484 GNLTSLQIFDVNTNNLHGELPETIAQLTALKKFSVFTNNFTGSLPREFGKSNPSLTHIYL 543

Query: 475 SYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNA 534
           S N+FSG+LPPG+C  G L  L  N N   GP+P+SL NC+ L R+RL+ N+  G+IT++
Sbjct: 544 SNNSFSGELPPGLCSDGKLTILAVNNNSFSGPLPKSLRNCSSLIRIRLDDNQFTGNITDS 603

Query: 535 LGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDI 594
            G+  +L +I L  NQL G L+  WG+C NL+   +  N++ G IP+ELG L  L +L +
Sbjct: 604 FGVLSNLVFISLSGNQLVGELSPEWGECVNLTEMEMGSNKLSGKIPSELGKLIQLGHLSL 663

Query: 595 FDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIPAEIGKLSRLQYLD 641
             N+ TG IP ++   S L +LNL  N LS +IP   G+L++L +LD
Sbjct: 664 HSNEFTGNIPPEIGNLSQLFKLNLSNNHLSGEIPKSYGRLAKLNFLD 710

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|356503631|ref|XP_003520610.1| PREDICTED: probable LRR receptor-like serine/threonine-protein kinase At4g08850-like [Glycine max]

 Score =  499 bits (1285), Expect = e-138,   Method: Compositional matrix adjust.
 Identities = 297/701 (42%), Positives = 414/701 (59%), Gaps = 60/701 (8%)

Query: 1   MVHRTLHFLILSYVVVQISAQKEAKALLNWKSSLVSSSLPSWTAINSNSGP---CNWNGI 57
           ++   L F+ L  + +  S + EA+AL+ WK+SL     PS  +  S S     CNW+ I
Sbjct: 10  LLFHILFFIPLLPLKITSSQRTEAEALVKWKNSLSPPLPPSLNSSWSLSNLGTLCNWDAI 69

Query: 58  QCNEVGS-ISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLIL 116
            C+   + +S+INL+++ L GTL  FDF++ PNLT LNLN NN  GSIP+ IG  +KL L
Sbjct: 70  VCDNTNTTVSQINLSDANLTGTLTTFDFASLPNLTQLNLNGNNFEGSIPSAIGKLSKLTL 129

Query: 117 LDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANY-LEDP 175
           LD  +N     +P E+G L +L+ L  YNN+L G IP+QL NL   W L +G+NY +  P
Sbjct: 130 LDFGTNLFEGTLPYELGQLRELQYLSFYNNNLNGTIPYQLMNLPKVWHLDLGSNYFITPP 189

Query: 176 DPVKFKGMASLTDLWLDYNLLEK-FPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENL 234
           D  ++ GM SLT L LD N+    FPSFI EC  L +LD+S N   G IP    ++L  L
Sbjct: 190 DWSQYSGMPSLTHLALDLNVFTGGFPSFILECHNLTYLDISQNNWNGIIPESMYSNLAKL 249

Query: 235 EYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHG 294
           EYLNLT +  +G++   +     L+ L++G N   G++P EIG +S L+ILE +    HG
Sbjct: 250 EYLNLTNSGLKGKLSPNLSKLSNLKELRIGNNMFNGSVPTEIGFVSGLQILELNNISAHG 309

Query: 295 LIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQI 354
            IPSSLG LR L RL+L     NS+IP ELG C NLTFL L+ NNL+G LP+SLA+L +I
Sbjct: 310 KIPSSLGQLRELWRLDLSINFFNSTIPSELGLCTNLTFLSLAGNNLSGPLPMSLANLAKI 369

Query: 355 SELGISNNQLS------------EIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFS 402
           SELG+S+N  S            +IISLQ Q N  +G +PP+IGLL K+ YLYL++N FS
Sbjct: 370 SELGLSDNSFSGQFSAPLITNWTQIISLQFQNNKFTGNIPPQIGLLKKINYLYLYNNLFS 429

Query: 403 GPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKS 462
           G IP +IGNL  + +L L+ N F+G IPST+ NL+++  ++L  N+ +GT+P +I N  S
Sbjct: 430 GSIPVEIGNLKEMKELDLSQNRFSGPIPSTLWNLTNIQVMNLFFNEFSGTIPMDIENLTS 489

Query: 463 -----------------------------DFGPRF-------------LRNVSFSYNNFS 480
                                         F  +F             L N+  S N+FS
Sbjct: 490 LEIFDVNTNNLYGELPETIVQLPVLRYFSVFTNKFTGSIPRELGKNNPLTNLYLSNNSFS 549

Query: 481 GKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPD 540
           G+LPP +C  G L+ L  N N   GP+P+SL NC+ LTRVRL+ N+L G+IT+A G+ PD
Sbjct: 550 GELPPDLCSDGKLVILAVNNNSFSGPLPKSLRNCSSLTRVRLDNNQLTGNITDAFGVLPD 609

Query: 541 LQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLT 600
           L +I L  N+L G L+  WG+C NL+   +  N++ G IP+EL  L  L+ L +  N+ T
Sbjct: 610 LNFISLSRNKLVGELSREWGECVNLTRMDMENNKLSGKIPSELSKLNKLRYLSLHSNEFT 669

Query: 601 GKIPAQLFRSSFLIRLNLRRNQLSDKIPAEIGKLSRLQYLD 641
           G IP+++     L   NL  N  S +IP   G+L++L +LD
Sbjct: 670 GNIPSEIGNLGLLFMFNLSSNHFSGEIPKSYGRLAQLNFLD 710

Source: Glycine max

Species: Glycine max

Genus: Glycine

Family: Fabaceae

Order: Fabales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|255571222|ref|XP_002526561.1| receptor protein kinase, putative [Ricinus communis] gi|223534122|gb|EEF35839.1| receptor protein kinase, putative [Ricinus communis]

 Score =  489 bits (1259), Expect = e-135,   Method: Compositional matrix adjust.
 Identities = 304/730 (41%), Positives = 413/730 (56%), Gaps = 107/730 (14%)

Query: 16  VQISAQKEAKALLNWKSSLVSS--SLPSWTAINSNSGPCNWNGIQCNEVGSISEINLANS 73
           +  S + +A+AL+ W++S  SS  SL SW ++ S +  CNW  I C+  G++SEI+L+N 
Sbjct: 24  ITSSPRTQAEALVRWRNSFSSSPPSLNSW-SLASLASLCNWTAISCDTTGTVSEIHLSNL 82

Query: 74  GLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIG 133
            + GTL  F FS+F N+T+ +L  NN+ G IP+ I N +KL  LDLSSN     IP E+G
Sbjct: 83  NITGTLAQFSFSSFSNITSFDLQNNNIGGVIPSAIINLSKLTYLDLSSNFFEGSIPVEMG 142

Query: 134 YLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDY 193
            L++L+ L LY N+L G IP+QLSNLQN   L +GAN+ + PD  KF  M SL  L L +
Sbjct: 143 RLAELQFLNLYYNNLNGTIPYQLSNLQNVRYLDLGANFFQTPDWSKFSSMPSLIHLSLFF 202

Query: 194 NLLEK-FPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREI 252
           N L   FP F++ C  L FLDLS N   G +P    T L  +EYLNLT+NSF+G +   I
Sbjct: 203 NELSSGFPDFLSNCRNLTFLDLSSNQFTGMVPEWAYTDLGKIEYLNLTENSFQGPLSSNI 262

Query: 253 KTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLK 312
                L+HL+L  N  +G IP  IG LS+L+I+E   N F G IPSSLG LR L+ L+L+
Sbjct: 263 SKLSNLKHLRLANNNFSGQIPGSIGFLSDLQIVELFNNSFIGNIPSSLGRLRNLESLDLR 322

Query: 313 SAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLS------- 365
              LNS+IP ELG C NLT+L L++N L+G LPLSLA+L ++ +LG+S+N L+       
Sbjct: 323 MNDLNSTIPPELGLCTNLTYLALALNQLSGELPLSLANLTKMVDLGLSDNVLTGEISPYL 382

Query: 366 -----EIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQL 420
                E+ SLQLQ N LSG +P EIG L KL  L+L++N  SG IP +IGNL +L  L++
Sbjct: 383 FSNWTELFSLQLQNNMLSGHIPSEIGQLTKLNLLFLYNNTLSGSIPFEIGNLKDLGTLEI 442

Query: 421 ANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSK------------------- 461
           + N  +G IP T+ NL++L  ++L SN ++G +PP+IGN                     
Sbjct: 443 SGNQLSGPIPPTLWNLTNLQVMNLFSNNISGIIPPDIGNMTALTLLDLSGNQLYGELPET 502

Query: 462 ----------------------SDFGPRF--LRNVSFSYNNFSGKLPPGICRGGNLIYLT 497
                                 SDFG     L   SFS N+F G+LPP IC G  L   T
Sbjct: 503 ISRLSSLQSINLFTNNFSGSIPSDFGKYSPSLSYASFSDNSFFGELPPEICSGLALKQFT 562

Query: 498 ANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTS 557
            N N   G +P  L NC+GLTRVRL+ N+  G+IT+A G++P L +I L  NQ  G ++ 
Sbjct: 563 VNDNNFTGSLPTCLRNCSGLTRVRLDGNQFTGNITDAFGVHPGLYFISLSGNQFIGEISP 622

Query: 558 NWGKCTNLSNFRISGNRIKGGIPAE----------------------------------- 582
            WG+C NL+NF I  NRI G IPAE                                   
Sbjct: 623 VWGECENLTNFHIDRNRISGEIPAELGKLTKLGALTLDSNDLTGMIPIELGNLSMLLSLN 682

Query: 583 -------------LGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIPA 629
                        LG+L+ L++LD+ DN+L+G IP +L     L  L+L  N LS +IP 
Sbjct: 683 LSNNHLRGVIPLSLGSLSKLESLDLSDNKLSGNIPDELANCEKLSSLDLSHNNLSGEIPF 742

Query: 630 EIGKLSRLQY 639
           E+G L+ L+Y
Sbjct: 743 ELGNLNSLKY 752

Source: Ricinus communis

Species: Ricinus communis

Genus: Ricinus

Family: Euphorbiaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224070124|ref|XP_002303118.1| predicted protein [Populus trichocarpa] gi|222844844|gb|EEE82391.1| predicted protein [Populus trichocarpa]

 Score =  481 bits (1238), Expect = e-133,   Method: Compositional matrix adjust.
 Identities = 296/682 (43%), Positives = 402/682 (58%), Gaps = 61/682 (8%)

Query: 19  SAQKEAKALLNWKSSLVSS--SLPSWTAINSNSGPCNWNGIQCNEVGSIS-EINLANSGL 75
           SA+ +A+ALL WKS+L  S  +L SW+  N N+  C W  + C+       +INL +  +
Sbjct: 27  SARTQAEALLQWKSTLSFSPPTLSSWSRSNLNN-LCKWTAVSCSSTSRSVSQINLRSLNI 85

Query: 76  DGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYL 135
            GTL  F+F+ F +LT  ++  NN+ G+IP+ IG+ +KL  LDLS+N     IP EI  L
Sbjct: 86  TGTLAHFNFTPFTDLTRFDIQSNNVNGTIPSAIGSLSKLTHLDLSANFFEGSIPVEISQL 145

Query: 136 SDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYN- 194
           ++L+ L LYNN+L G IP QL+NL     L +GANYLE+PD  KF  M SL  L    N 
Sbjct: 146 TELQYLSLYNNNLNGIIPFQLANLPKVRHLDLGANYLENPDWSKFS-MPSLEYLSFFLNE 204

Query: 195 LLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKT 254
           L  +FP FI  C  L FLDLS N   G IP    T+L  LE LNL  NSF+G +   I  
Sbjct: 205 LTAEFPHFITNCRNLTFLDLSLNKFTGQIPELVYTNLGKLEALNLYNNSFQGPLSSNISK 264

Query: 255 FPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSA 314
              L+++ L  N L G IP+ IG +S L+I+E   N F G IP S+G L+ L++L+L+  
Sbjct: 265 LSNLKNISLQYNLLRGQIPESIGSISGLQIVELLGNSFQGNIPPSIGQLKHLEKLDLRMN 324

Query: 315 GLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLS--------- 365
            LNS+IP ELG C NLT+L L+ N L+G LPLSL++L +I+++G+S N LS         
Sbjct: 325 ALNSTIPPELGLCTNLTYLALADNQLSGELPLSLSNLSKIADMGLSENSLSGEISPTLIS 384

Query: 366 ---EIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLAN 422
              E+ISLQ+Q N  SG +PPEIG L  L+YL+L++N FSG IP +IGNL  L  L L+ 
Sbjct: 385 NWTELISLQVQNNLFSGNIPPEIGKLTMLQYLFLYNNTFSGSIPPEIGNLKELLSLDLSG 444

Query: 423 NFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSK--------------------- 461
           N  +G +P  + NL++L  L+L SN + G +PPE+GN                       
Sbjct: 445 NQLSGPLPPALWNLTNLQILNLFSNNINGKIPPEVGNLTMLQILDLNTNQLHGELPLTIS 504

Query: 462 --------------------SDFGPRF--LRNVSFSYNNFSGKLPPGICRGGNLIYLTAN 499
                               SDFG     L   SFS N+FSG+LPP +CRG +L   T N
Sbjct: 505 DITSLTSINLFGNNLSGSIPSDFGKYMPSLAYASFSNNSFSGELPPELCRGRSLQQFTVN 564

Query: 500 VNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNW 559
            N   G +P  L NC+ L+RVRLE+NR  G+IT+A G+ P+L ++ L DNQ  G ++ +W
Sbjct: 565 SNSFTGSLPTCLRNCSELSRVRLEKNRFTGNITDAFGVLPNLVFVALSDNQFIGEISPDW 624

Query: 560 GKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLR 619
           G+C NL+N ++ GNRI G IPAELG L  L+ L +  N L G+IPA+L   S L  LNL 
Sbjct: 625 GECKNLTNLQMDGNRISGEIPAELGKLPQLRVLSLGSNDLAGRIPAELGNLSRLFMLNLS 684

Query: 620 RNQLSDKIPAEIGKLSRLQYLD 641
            NQL+ ++P  +  L  L+YLD
Sbjct: 685 NNQLTGEVPQSLTSLEGLEYLD 706

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi|224103093|ref|XP_002334092.1| predicted protein [Populus trichocarpa] gi|222869551|gb|EEF06682.1| predicted protein [Populus trichocarpa]

 Score =  479 bits (1234), Expect = e-132,   Method: Compositional matrix adjust.
 Identities = 292/682 (42%), Positives = 398/682 (58%), Gaps = 61/682 (8%)

Query: 19  SAQKEAKALLNWKSSLVSSSLP--SWTAINSNSGPCNWNGIQCNEVG-SISEINLANSGL 75
           SA+ +A+ALL WKS+L  S  P  SW+  N N+  C W  + C+    ++S+ NL +  +
Sbjct: 26  SARTQAEALLQWKSTLSFSPPPLSSWSRSNLNN-LCKWTAVSCSSTSRTVSQTNLRSLNI 84

Query: 76  DGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYL 135
            GTL  F+F+ F  LT  ++  N + G+IP+ IG+ + L  LDLS N     IP EI  L
Sbjct: 85  TGTLAHFNFTPFTGLTRFDIQNNKVNGTIPSAIGSLSNLTHLDLSVNFFEGSIPVEISQL 144

Query: 136 SDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYN- 194
           ++L+ L LYNN+L G IP QL+NL     L +GANYLE+PD   F  M SL  L    N 
Sbjct: 145 TELQYLSLYNNNLNGIIPFQLANLPKVRHLDLGANYLENPDWSNFS-MPSLEYLSFFLNE 203

Query: 195 LLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKT 254
           L  +FP FI  C  L FLDLS N   G IP    T+L  LE LNL  NSF+G +   I  
Sbjct: 204 LTAEFPHFITNCRNLTFLDLSLNKFTGQIPELVYTNLGKLEALNLYNNSFQGPLSSNISK 263

Query: 255 FPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSA 314
              L+++ L  N L+G IP+ IG +S L+I+E   N F G IP S+G L+ L++L+L+  
Sbjct: 264 LSNLKNISLQYNLLSGQIPESIGSISGLQIVELFGNSFQGNIPPSIGQLKHLEKLDLRMN 323

Query: 315 GLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLS--------- 365
            LNS+IP ELG C NLT+L L+ N L+G LPLSL++L +I+++G+S N LS         
Sbjct: 324 ALNSTIPPELGLCTNLTYLTLADNQLSGELPLSLSNLAKIADMGLSENSLSGEISPTLIS 383

Query: 366 ---EIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLAN 422
              E+ISLQ+Q N  SG +PPEIG L  L+YL+L++N FSG IP +IGNL  L  L L+ 
Sbjct: 384 NWTELISLQVQNNLFSGNIPPEIGKLTMLQYLFLYNNTFSGSIPPEIGNLKELLSLDLSG 443

Query: 423 NFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSK--------------------- 461
           N  +G +P  + NL++L  L+L SN + G +PPE+GN                       
Sbjct: 444 NQLSGPLPPALWNLTNLQILNLFSNNINGKIPPEVGNLTMLQILDLNTNQLHGELPLTIS 503

Query: 462 --------------------SDFGPRF--LRNVSFSYNNFSGKLPPGICRGGNLIYLTAN 499
                               SDFG     L   SFS N+FSG+LPP +CRG +L   T N
Sbjct: 504 DITSLTSINLFGNNLSGSIPSDFGKYMPSLAYASFSNNSFSGELPPELCRGRSLQQFTVN 563

Query: 500 VNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNW 559
            N   G +P  L NC+ L+RVRLE+NR  G+IT+A G+ P+L ++ L DNQ  G ++ +W
Sbjct: 564 SNSFTGSLPTCLRNCSELSRVRLEKNRFTGNITDAFGVLPNLVFVALSDNQFIGEISPDW 623

Query: 560 GKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLR 619
           G+C NL+N ++ GNRI G IPAELG L  L+ L +  N L G+IPA+L   S L  LNL 
Sbjct: 624 GECKNLTNLQMDGNRISGEIPAELGKLPQLRVLSLGSNDLAGRIPAELGNLSRLFMLNLS 683

Query: 620 RNQLSDKIPAEIGKLSRLQYLD 641
            NQL+ ++P  +  L  L+ LD
Sbjct: 684 NNQLTGEVPQSLTSLEGLESLD 705

Source: Populus trichocarpa

Species: Populus trichocarpa

Genus: Populus

Family: Salicaceae

Order: Malpighiales

Phylum: Streptophyta

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	641
TAIR|locus:2011339	1120	AT1G35710 [Arabidopsis thalian	0.815	0.466	0.370	5e-83
UNIPROTKB|P93194	1109	INRPK1 "Receptor-like protein	0.917	0.530	0.325	3e-75
TAIR|locus:2120362	1249	GSO1 "GASSHO1" [Arabidopsis th	0.912	0.468	0.331	5.7e-72
TAIR|locus:2138268	1045	AT4G08850 [Arabidopsis thalian	0.695	0.426	0.362	6.2e-70
TAIR|locus:2032697	1123	PEPR1 "PEP1 receptor 1" [Arabi	0.921	0.526	0.311	2.1e-69
TAIR|locus:2161825	1090	AT5G56040 [Arabidopsis thalian	0.828	0.487	0.335	1.2e-67
TAIR|locus:2156349	1252	GSO2 "GASSHO 2" [Arabidopsis t	0.820	0.420	0.335	5.3e-67
TAIR|locus:2170483	1173	FLS2 "FLAGELLIN-SENSITIVE 2" [	0.917	0.501	0.324	1.1e-66
TAIR|locus:2085949	1141	AT3G24240 [Arabidopsis thalian	0.867	0.487	0.326	1.2e-66
TAIR|locus:2154344	1135	AT5G48940 [Arabidopsis thalian	0.950	0.536	0.314	8.7e-66

TAIR|locus:2011339 AT1G35710 [Arabidopsis thaliana (taxid:3702)]

 Score = 832 (297.9 bits), Expect = 5.0e-83, P = 5.0e-83
 Identities = 201/542 (37%), Positives = 280/542 (51%)

Query:   112 TKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANY 171
             + L  +DLS N L+  IPP+ G LS L    L  N LTG+I   L NL+N  +L +  NY
Sbjct:   102 SNLAYVDLSMNLLSGTIPPQFGNLSKLIYFDLSTNHLTGEISPSLGNLKNLTVLYLHQNY 161

Query:   172 LEDPDPVKFKGMASLTDLWLDYNLLE-KFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTH 230
             L    P +   M S+TDL L  N L    PS +     LM L L +N + G IP E L +
Sbjct:   162 LTSVIPSELGNMESMTDLALSQNKLTGSIPSSLGNLKNLMVLYLYENYLTGVIPPE-LGN 220

Query:   231 LENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHEN 290
             +E++  L L++N   G IP  +     L  L L +N LTG IP EIG + ++  L   +N
Sbjct:   221 MESMTDLALSQNKLTGSIPSTLGNLKNLMVLYLYENYLTGVIPPEIGNMESMTNLALSQN 280

Query:   291 LFHGLIPSSXXXXXXXXXXXXKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLAS 350
                G IPSS                L   IP +LG   ++  LELS N LTGS+P SL +
Sbjct:   281 KLTGSIPSSLGNLKNLTLLSLFQNYLTGGIPPKLGNIESMIDLELSNNKLTGSIPSSLGN 340

Query:   351 LRQISELGISNNQLSEII-----------SLQLQMNDLSGKLPPEIGLLPKLEYLYLFDN 399
             L+ ++ L +  N L+ +I            LQL  N L+G +P   G L  L YLYL+ N
Sbjct:   341 LKNLTILYLYENYLTGVIPPELGNMESMIDLQLNNNKLTGSIPSSFGNLKNLTYLYLYLN 400

Query:   400 KFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNXXXXXXXXXXXXXXTGTLPPEIGN 459
               +G IPQ++GN+ ++ +L L+ N   GS+P + GN              +G +PP + N
Sbjct:   401 YLTGVIPQELGNMESMINLDLSQNKLTGSVPDSFGNFTKLESLYLRVNHLSGAIPPGVAN 460

Query:   460 SKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTR 519
             S        L  +    NNF+G  P  +C+G  L  ++ + N L GPIP+SL +C  L R
Sbjct:   461 SSH------LTTLILDTNNFTGFFPETVCKGRKLQNISLDYNHLEGPIPKSLRDCKSLIR 514

Query:   520 VRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGI 579
              R   N+  GDI  A GIYPDL +ID   N+  G ++SNW K   L    +S N I G I
Sbjct:   515 ARFLGNKFTGDIFEAFGIYPDLNFIDFSHNKFHGEISSNWEKSPKLGALIMSNNNITGAI 574

Query:   580 PAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIPAEIGKLSRLQY 639
             P E+ N+T L  LD+  N L G++P  +   + L RL L  NQLS ++PA +  L+ L+ 
Sbjct:   575 PTEIWNMTQLVELDLSTNNLFGELPEAIGNLTNLSRLRLNGNQLSGRVPAGLSFLTNLES 634

Query:   640 LD 641
             LD
Sbjct:   635 LD 636

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000165 "MAPK cascade" evidence=RCA

GO:0009814 "defense response, incompatible interaction" evidence=RCA

UNIPROTKB|P93194 INRPK1 "Receptor-like protein kinase" [Ipomoea nil (taxid:35883)]

 Score = 762 (273.3 bits), Expect = 3.0e-75, P = 3.0e-75
 Identities = 199/612 (32%), Positives = 296/612 (48%)

Query:    42 WTAINSNSGPCNWNGIQCNEVGSISEINLANSGLDGTLDGFDFSAFPXXXXXXXXXXXXV 101
             W A  S+S PC+W G++C+    +  +NL++ G+ G   G + S                
Sbjct:    49 WNA--SDSTPCSWLGVECDRRQFVDTLNLSSYGISGEF-GPEISHLKHLKKVVLSGNGFF 105

Query:   102 GSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQN 161
             GSIP+ +GN + L  +DLSSN+ T  IP  +G L +LR L L+ NSL G  P  L ++ +
Sbjct:   106 GSIPSQLGNCSLLEHIDLSSNSFTGNIPDTLGALQNLRNLSLFFNSLIGPFPESLLSIPH 165

Query:   162 AWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLE-KFPSFIAECSKLMFLDLSDNLIM 220
                +    N L    P     M+ LT LWLD N      PS +   + L  L L+DN ++
Sbjct:   166 LETVYFTGNGLNGSIPSNIGNMSELTTLWLDDNQFSGPVPSSLGNITTLQELYLNDNNLV 225

Query:   221 GHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLS 280
             G +P+  L +LENL YL++  NS  G IP +  +  ++  + L  N+ TG +P  +G  +
Sbjct:   226 GTLPVT-LNNLENLVYLDVRNNSLVGAIPLDFVSCKQIDTISLSNNQFTGGLPPGLGNCT 284

Query:   281 NLEILEFHENLFHGLIPSSXXXXXXXXXXXXKSAGLNSSIPKELGFCANLTFLELSINNL 340
             +L           G IPS                  +  IP ELG C ++  L+L  N L
Sbjct:   285 SLREFGAFSCALSGPIPSCFGQLTKLDTLYLAGNHFSGRIPPELGKCKSMIDLQLQQNQL 344

Query:   341 TGSLPLSLASLRQISELGISNNQLS-----------EIISLQLQMNDLSGKLPPEIGLLP 389
              G +P  L  L Q+  L +  N LS            + SLQL  N+LSG+LP ++  L 
Sbjct:   345 EGEIPGELGMLSQLQYLHLYTNNLSGEVPLSIWKIQSLQSLQLYQNNLSGELPVDMTELK 404

Query:   390 KLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNXXXXXXXXXXXXXX 449
             +L  L L++N F+G IPQ +G  ++L  L L  N F G IP  + +              
Sbjct:   405 QLVSLALYENHFTGVIPQDLGANSSLEVLDLTRNMFTGHIPPNLCSQKKLKRLLLGYNYL 464

Query:   450 TGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPE 509
              G++P ++G   +      L  +    NN  G LP  + +  NL++   + N   GPIP 
Sbjct:   465 EGSVPSDLGGCST------LERLILEENNLRGGLPDFVEKQ-NLLFFDLSGNNFTGPIPP 517

Query:   510 SLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFR 569
             SL N   +T + L  N+L G I   LG    L++++L  N L G+L S    C  LS   
Sbjct:   518 SLGNLKNVTAIYLSSNQLSGSIPPELGSLVKLEHLNLSHNILKGILPSELSNCHKLSELD 577

Query:   570 ISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIPA 629
              S N + G IP+ LG+LT L  L + +N  +G IP  LF+S+ L+ L L  N L+  IP 
Sbjct:   578 ASHNLLNGSIPSTLGSLTELTKLSLGENSFSGGIPTSLFQSNKLLNLQLGGNLLAGDIPP 637

Query:   630 EIGKLSRLQYLD 641
              +G L  L+ L+
Sbjct:   638 -VGALQALRSLN 648

GO:0005524 "ATP binding" evidence=NAS

GO:0005576 "extracellular region" evidence=NAS

GO:0005886 "plasma membrane" evidence=NAS

GO:0006468 "protein phosphorylation" evidence=NAS

GO:0019199 "transmembrane receptor protein kinase activity" evidence=NAS

TAIR|locus:2120362 GSO1 "GASSHO1" [Arabidopsis thaliana (taxid:3702)]

 Score = 736 (264.1 bits), Expect = 5.7e-72, P = 5.7e-72
 Identities = 205/619 (33%), Positives = 294/619 (47%)

Query:    42 WTAINSNSGPCNWNGIQCNEVG--SISEINLANSGLDGTLDGFDFSAFPXXXXXXXXXXX 99
             W + N N   C+W G+ C+  G   +  +NL   GL G++  + F  F            
Sbjct:    50 WNSDNINY--CSWTGVTCDNTGLFRVIALNLTGLGLTGSISPW-FGRFDNLIHLDLSSNN 106

Query:   100 XVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNL 159
              VG IP  + N T L  L L SN LT  IP ++G L ++R L + +N L G IP  L NL
Sbjct:   107 LVGPIPTALSNLTSLESLFLFSNQLTGEIPSQLGSLVNIRSLRIGDNELVGDIPETLGNL 166

Query:   160 QNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLE-KFPSFIAECSKLMFLDLSDNL 218
              N  +L + +  L  P P +   +  +  L L  N LE   P+ +  CS L     ++N+
Sbjct:   167 VNLQMLALASCRLTGPIPSQLGRLVRVQSLILQDNYLEGPIPAELGNCSDLTVFTAAENM 226

Query:   219 IMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGL 278
             + G IP E L  LENLE LNL  NS  GEIP ++    +L++L L  N+L G IP  +  
Sbjct:   227 LNGTIPAE-LGRLENLEILNLANNSLTGEIPSQLGEMSQLQYLSLMANQLQGLIPKSLAD 285

Query:   279 LSNLEILEFHENLFHGLIPSSXXXXXXXXXXXXKSAGLNSSIPKELGFCANLTFLE---L 335
             L NL+ L+   N   G IP               +  L+ S+PK +  C+N T LE   L
Sbjct:   286 LGNLQTLDLSANNLTGEIPEEFWNMSQLLDLVLANNHLSGSLPKSI--CSNNTNLEQLVL 343

Query:   336 SINNLTGSLPLSLASLRQISELGISNNQLS-----------EIISLQLQMNDLSGKLPPE 384
             S   L+G +P+ L+  + + +L +SNN L+           E+  L L  N L G L P 
Sbjct:   344 SGTQLSGEIPVELSKCQSLKQLDLSNNSLAGSIPEALFELVELTDLYLHNNTLEGTLSPS 403

Query:   385 IGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNXXXXXXXXX 444
             I  L  L++L L+ N   G +P++I  L  L  L L  N F+G IP  IGN         
Sbjct:   404 ISNLTNLQWLVLYHNNLEGKLPKEISALRKLEVLFLYENRFSGEIPQEIGNCTSLKMIDM 463

Query:   445 XXXXXTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPP--GICRGGNLIYLTANVNK 502
                   G +PP IG  K       L  +    N   G LP   G C   N++ L  N  +
Sbjct:   464 FGNHFEGEIPPSIGRLKE------LNLLHLRQNELVGGLPASLGNCHQLNILDLADN--Q 515

Query:   503 LVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKC 562
             L G IP S     GL ++ L  N L G++ ++L    +L  I+L  N+L+G +    G  
Sbjct:   516 LSGSIPSSFGFLKGLEQLMLYNNSLQGNLPDSLISLRNLTRINLSHNRLNGTIHPLCGSS 575

Query:   563 TNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQ 622
             + LS F ++ N  +  IP ELGN   L  L +  NQLTGKIP  L +   L  L++  N 
Sbjct:   576 SYLS-FDVTNNGFEDEIPLELGNSQNLDRLRLGKNQLTGKIPWTLGKIRELSLLDMSSNA 634

Query:   623 LSDKIPAEIGKLSRLQYLD 641
             L+  IP ++    +L ++D
Sbjct:   635 LTGTIPLQLVLCKKLTHID 653

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2138268 AT4G08850 [Arabidopsis thaliana (taxid:3702)]

 Score = 712 (255.7 bits), Expect = 6.2e-70, P = 6.2e-70
 Identities = 170/469 (36%), Positives = 246/469 (52%)

Query:   185 SLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHI-PIEQLTHLENLEYLNLTKNS 243
             +LT+  ++    E FP   +    L F+DLS N   G I P+        LEY +L+ N 
Sbjct:    99 NLTNTGIE-GTFEDFP--FSSLPNLTFVDLSMNRFSGTISPL--WGRFSKLEYFDLSINQ 153

Query:   244 FEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSXXXX 303
               GEIP E+     L  L L +NKL G+IP EIG L+ +  +  ++NL  G IPSS    
Sbjct:   154 LVGEIPPELGDLSNLDTLHLVENKLNGSIPSEIGRLTKVTEIAIYDNLLTGPIPSSFGNL 213

Query:   304 XXXXXXXXKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQ 363
                         L+ SIP E+G   NL  L L  NNLTG +P S  +L+ ++ L +  NQ
Sbjct:   214 TKLVNLYLFINSLSGSIPSEIGNLPNLRELCLDRNNLTGKIPSSFGNLKNVTLLNMFENQ 273

Query:   364 LSEII-----------SLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNL 412
             LS  I           +L L  N L+G +P  +G +  L  L+L+ N+ +G IP ++G +
Sbjct:   274 LSGEIPPEIGNMTALDTLSLHTNKLTGPIPSTLGNIKTLAVLHLYLNQLNGSIPPELGEM 333

Query:   413 TNLFDLQLANNFFNGSIPSTIGNXXXXXXXXXXXXXXTGTLPPEIGNSKSDFGPRFLRNV 472
              ++ DL+++ N   G +P + G               +G +PP I NS        L  +
Sbjct:   334 ESMIDLEISENKLTGPVPDSFGKLTALEWLFLRDNQLSGPIPPGIANSTE------LTVL 387

Query:   473 SFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDIT 532
                 NNF+G LP  ICRGG L  LT + N   GP+P+SL +C  L RVR + N   GDI+
Sbjct:   388 QLDTNNFTGFLPDTICRGGKLENLTLDDNHFEGPVPKSLRDCKSLIRVRFKGNSFSGDIS 447

Query:   533 NALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNL 592
              A G+YP L +IDL +N   G L++NW +   L  F +S N I G IP E+ N+T L  L
Sbjct:   448 EAFGVYPTLNFIDLSNNNFHGQLSANWEQSQKLVAFILSNNSITGAIPPEIWNMTQLSQL 507

Query:   593 DIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIPAEIGKLSRLQYLD 641
             D+  N++TG++P  +   + + +L L  N+LS KIP+ I  L+ L+YLD
Sbjct:   508 DLSSNRITGELPESISNINRISKLQLNGNRLSGKIPSGIRLLTNLEYLD 556

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=ISM

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0016020 "membrane" evidence=IDA

GO:0009506 "plasmodesma" evidence=IDA

GO:0006857 "oligopeptide transport" evidence=RCA

GO:0006995 "cellular response to nitrogen starvation" evidence=RCA

GO:0009627 "systemic acquired resistance" evidence=RCA

GO:0031347 "regulation of defense response" evidence=RCA

TAIR|locus:2032697 PEPR1 "PEP1 receptor 1" [Arabidopsis thaliana (taxid:3702)]

 Score = 710 (255.0 bits), Expect = 2.1e-69, P = 2.1e-69
 Identities = 191/613 (31%), Positives = 281/613 (45%)

Query:    42 WTAINSNSGPCNWNGIQCNEVGSISEINLANSGLDGTLDGFDFSAFPXXXXXXXXXXXXV 101
             W    S + PCNW GI C++  +++ +N   S + G L G +                  
Sbjct:    54 WKINASEATPCNWFGITCDDSKNVASLNFTRSRVSGQL-GPEIGELKSLQILDLSTNNFS 112

Query:   102 GSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQN 161
             G+IP+ +GN TKL  LDLS N  ++ IP  +  L  L VL LY N LTG++P  L  +  
Sbjct:   113 GTIPSTLGNCTKLATLDLSENGFSDKIPDTLDSLKRLEVLYLYINFLTGELPESLFRIPK 172

Query:   162 AWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLE-KFPSFIAECSKLMFLDLSDNLIM 220
               +L +  N L  P P        L +L +  N      P  I   S L  L L  N ++
Sbjct:   173 LQVLYLDYNNLTGPIPQSIGDAKELVELSMYANQFSGNIPESIGNSSSLQILYLHRNKLV 232

Query:   221 GHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLS 280
             G +P E L  L NL  L +  NS +G +         L  L L  N+  G +P  +G  S
Sbjct:   233 GSLP-ESLNLLGNLTTLFVGNNSLQGPVRFGSPNCKNLLTLDLSYNEFEGGVPPALGNCS 291

Query:   281 NLEILEFHENLFHGLIPSSXXXXXXXXXXXXKSAGLNSSIPKELGFCANLTFLELSINNL 340
             +L+ L        G IPSS                L+ SIP ELG C++L  L+L+ N L
Sbjct:   292 SLDALVIVSGNLSGTIPSSLGMLKNLTILNLSENRLSGSIPAELGNCSSLNLLKLNDNQL 351

Query:   341 TGSLPLSLASLRQISELGISNNQLSEIISLQL-------QM----NDLSGKLPPEIGLLP 389
              G +P +L  LR++  L +  N+ S  I +++       Q+    N+L+G+LP E+  + 
Sbjct:   352 VGGIPSALGKLRKLESLELFENRFSGEIPIEIWKSQSLTQLLVYQNNLTGELPVEMTEMK 411

Query:   390 KLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNXXXXXXXXXXXXXX 449
             KL+   LF+N F G IP  +G  ++L ++    N   G IP  + +              
Sbjct:   412 KLKIATLFNNSFYGAIPPGLGVNSSLEEVDFIGNKLTGEIPPNLCHGRKLRILNLGSNLL 471

Query:   450 TGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPE 509
              GT+P  IG+ K+      +R      NN SG LP    +  +L +L  N N   GPIP 
Sbjct:   472 HGTIPASIGHCKT------IRRFILRENNLSGLLPE-FSQDHSLSFLDFNSNNFEGPIPG 524

Query:   510 SLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFR 569
             SL +C  L+ + L +NR  G I   LG   +L Y++L  N L G L +    C +L  F 
Sbjct:   525 SLGSCKNLSSINLSRNRFTGQIPPQLGNLQNLGYMNLSRNLLEGSLPAQLSNCVSLERFD 584

Query:   570 ISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIPA 629
             +  N + G +P+   N   L  L + +N+ +G IP  L     L  L + RN    +IP+
Sbjct:   585 VGFNSLNGSVPSNFSNWKGLTTLVLSENRFSGGIPQFLPELKKLSTLQIARNAFGGEIPS 644

Query:   630 EIGKLSRLQY-LD 641
              IG +  L Y LD
Sbjct:   645 SIGLIEDLIYDLD 657

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM;IDA

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0001653 "peptide receptor activity" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0045087 "innate immune response" evidence=TAS

GO:0009611 "response to wounding" evidence=IEP

GO:0009753 "response to jasmonic acid stimulus" evidence=IEP

GO:0004383 "guanylate cyclase activity" evidence=IDA

GO:0006955 "immune response" evidence=IMP

GO:0009506 "plasmodesma" evidence=IDA

GO:0009723 "response to ethylene stimulus" evidence=RCA

GO:0009738 "abscisic acid mediated signaling pathway" evidence=RCA

GO:0035556 "intracellular signal transduction" evidence=RCA

GO:0052542 "defense response by callose deposition" evidence=RCA

TAIR|locus:2161825 AT5G56040 [Arabidopsis thaliana (taxid:3702)]

 Score = 693 (249.0 bits), Expect = 1.2e-67, P = 1.2e-67
 Identities = 186/555 (33%), Positives = 274/555 (49%)

Query:   102 GSIPA-GIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQ 160
             G +PA  +     L LL L+S NLT  IP E+G LS+L VL L +NSL+G+IP  +  L+
Sbjct:    85 GPLPATNLRQIKSLTLLSLTSVNLTGSIPKELGDLSELEVLDLADNSLSGEIPVDIFKLK 144

Query:   161 NAWLLRIGANYLEDPDPVKFKGMASLTDLWL-DYNLLEKFPSFIAECSKLMFLDLSDNL- 218
                +L +  N LE   P +   + +L +L L D  L  + P  I E   L       N  
Sbjct:   145 KLKILSLNTNNLEGVIPSELGNLVNLIELTLFDNKLAGEIPRTIGELKNLEIFRAGGNKN 204

Query:   219 IMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGL 278
             + G +P E + + E+L  L L + S  G +P  I    K++ + L  + L+G IPDEIG 
Sbjct:   205 LRGELPWE-IGNCESLVTLGLAETSLSGRLPASIGNLKKVQTIALYTSLLSGPIPDEIGN 263

Query:   279 LSNLEILEFHENLFHGLIPSSXXXXXXXXXXXXKSAGLNSSIPKELGFCANLTFLELSIN 338
              + L+ L  ++N   G IP S                L   IP ELG C  L  ++LS N
Sbjct:   264 CTELQNLYLYQNSISGSIPVSMGRLKKLQSLLLWQNNLVGKIPTELGTCPELFLVDLSEN 323

Query:   339 NLTGSLPLSLASLRQISELGISNNQLS-----------EIISLQLQMNDLSGKLPPEIGL 387
              LTG++P S  +L  + EL +S NQLS           ++  L++  N +SG++PP IG 
Sbjct:   324 LLTGNIPRSFGNLPNLQELQLSVNQLSGTIPEELANCTKLTHLEIDNNQISGEIPPLIGK 383

Query:   388 LPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNXXXXXXXXXXXX 447
             L  L   + + N+ +G IP+ +     L  + L+ N  +GSIP+ I              
Sbjct:   384 LTSLTMFFAWQNQLTGIIPESLSQCQELQAIDLSYNNLSGSIPNGIFEIRNLTKLLLLSN 443

Query:   448 XXTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPI 507
               +G +PP+IGN  +      L  +  + N  +G +P  I    NL ++  + N+L+G I
Sbjct:   444 YLSGFIPPDIGNCTN------LYRLRLNGNRLAGNIPAEIGNLKNLNFIDISENRLIGNI 497

Query:   508 PESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSN 567
             P  +  CT L  V L  N L G +   L     LQ+IDL DN L+G L +  G  T L+ 
Sbjct:   498 PPEISGCTSLEFVDLHSNGLTGGLPGTLP--KSLQFIDLSDNSLTGSLPTGIGSLTELTK 555

Query:   568 FRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFR-SSFLIRLNLRRNQLSDK 626
               ++ NR  G IP E+ +   LQ L++ DN  TG+IP +L R  S  I LNL  N  + +
Sbjct:   556 LNLAKNRFSGEIPREISSCRSLQLLNLGDNGFTGEIPNELGRIPSLAISLNLSCNHFTGE 615

Query:   627 IPAEIGKLSRLQYLD 641
             IP+    L+ L  LD
Sbjct:   616 IPSRFSSLTNLGTLD 630

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0006084 "acetyl-CoA metabolic process" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010075 "regulation of meristem growth" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0016126 "sterol biosynthetic process" evidence=RCA

GO:0016132 "brassinosteroid biosynthetic process" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

GO:0048653 "anther development" evidence=RCA

TAIR|locus:2156349 GSO2 "GASSHO 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 690 (248.0 bits), Expect = 5.3e-67, P = 5.3e-67
 Identities = 185/551 (33%), Positives = 263/551 (47%)

Query:   102 GSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQN 161
             G IP+ +G+   L  L L  N L   IP   G L +L++L L +  LTG IP +   L  
Sbjct:   134 GDIPSQLGSLVNLKSLKLGDNELNGTIPETFGNLVNLQMLALASCRLTGLIPSRFGRLVQ 193

Query:   162 AWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLE-KFPSFIAECSKLMFLDLSDNLIM 220
                L +  N LE P P +     SL      +N L    P+ +     L  L+L DN   
Sbjct:   194 LQTLILQDNELEGPIPAEIGNCTSLALFAAAFNRLNGSLPAELNRLKNLQTLNLGDNSFS 253

Query:   221 GHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLS 280
             G IP  QL  L +++YLNL  N  +G IP+ +     L+ L L  N LTG I +E   ++
Sbjct:   254 GEIP-SQLGDLVSIQYLNLIGNQLQGLIPKRLTELANLQTLDLSSNNLTGVIHEEFWRMN 312

Query:   281 NLEILEFHENLFHGLIPSSXXXXXXXXXXXXKS-AGLNSSIPKELGFCANLTFLELSINN 339
              LE L   +N   G +P +             S   L+  IP E+  C +L  L+LS N 
Sbjct:   313 QLEFLVLAKNRLSGSLPKTICSNNTSLKQLFLSETQLSGEIPAEISNCQSLKLLDLSNNT 372

Query:   340 LTGSLPLSLASLRQISELGISNNQL--------SEIISLQ---LQMNDLSGKLPPEIGLL 388
             LTG +P SL  L +++ L ++NN L        S + +LQ   L  N+L GK+P EIG L
Sbjct:   373 LTGQIPDSLFQLVELTNLYLNNNSLEGTLSSSISNLTNLQEFTLYHNNLEGKVPKEIGFL 432

Query:   389 PKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNXXXXXXXXXXXXX 448
              KLE +YL++N+FSG +P +IGN T L ++    N  +G IPS+IG              
Sbjct:   433 GKLEIMYLYENRFSGEMPVEIGNCTRLQEIDWYGNRLSGEIPSSIGRLKDLTRLHLRENE 492

Query:   449 XTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPP--GICRGGNLIYLTANVNKLVGP 506
               G +P  +GN         +  +  + N  SG +P   G      L ++  N N L G 
Sbjct:   493 LVGNIPASLGNCHQ------MTVIDLADNQLSGSIPSSFGFLTALEL-FMIYN-NSLQGN 544

Query:   507 IPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLS 566
             +P+SL N   LTR+    N+ +G I+   G    L + D+ +N   G +    GK TNL 
Sbjct:   545 LPDSLINLKNLTRINFSSNKFNGSISPLCGSSSYLSF-DVTENGFEGDIPLELGKSTNLD 603

Query:   567 NFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDK 626
               R+  N+  G IP   G ++ L  LDI  N L+G IP +L     L  ++L  N LS  
Sbjct:   604 RLRLGKNQFTGRIPRTFGKISELSLLDISRNSLSGIIPVELGLCKKLTHIDLNNNYLSGV 663

Query:   627 IPAEIGKLSRL 637
             IP  +GKL  L
Sbjct:   664 IPTWLGKLPLL 674

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0009553 "embryo sac development" evidence=IMP

GO:0008544 "epidermis development" evidence=IGI

GO:0009790 "embryo development" evidence=IGI

TAIR|locus:2170483 FLS2 "FLAGELLIN-SENSITIVE 2" [Arabidopsis thaliana (taxid:3702)]

 Score = 686 (246.5 bits), Expect = 1.1e-66, P = 1.1e-66
 Identities = 200/616 (32%), Positives = 283/616 (45%)

Query:    42 WTAINSNSGPCNWNGIQCNEVGSISEINLANSGLDGTLDGFDFSAFPXXXXXXXXXXXXV 101
             WT I S    CNW GI C+  G +  ++L    L+G L     +                
Sbjct:    52 WTIIGSLRH-CNWTGITCDSTGHVVSVSLLEKQLEGVLSPA-IANLTYLQVLDLTSNSFT 109

Query:   102 GSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQN 161
             G IPA IG  T+L  L L  N  +  IP  I  L ++  L L NN L+G +P ++    +
Sbjct:   110 GKIPAEIGKLTELNQLILYLNYFSGSIPSGIWELKNIFYLDLRNNLLSGDVPEEICKTSS 169

Query:   162 AWLLRIGANYLEDPDPVKFKGMASLTDLWLDYN-LLEKFPSFIAECSKLMFLDLSDNLIM 220
               L+    N L    P     +  L       N L    P  I   + L  LDLS N + 
Sbjct:   170 LVLIGFDYNNLTGKIPECLGDLVHLQMFVAAGNHLTGSIPVSIGTLANLTDLDLSGNQLT 229

Query:   221 GHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLS 280
             G IP     +L NL+ L LT+N  EG+IP EI     L  L+L  N+LTG IP E+G L 
Sbjct:   230 GKIP-RDFGNLLNLQSLVLTENLLEGDIPAEIGNCSSLVQLELYDNQLTGKIPAELGNLV 288

Query:   281 NLEILEFHENLFHGLIPSSXXXXXXXXXXXXKSAGLNSSIPKELGFCANLTFLELSINNL 340
              L+ L  ++N     IPSS                L   I +E+GF  +L  L L  NN 
Sbjct:   289 QLQALRIYKNKLTSSIPSSLFRLTQLTHLGLSENHLVGPISEEIGFLESLEVLTLHSNNF 348

Query:   341 TGSLPLSLASLRQISELGISNNQLS-EI---ISLQLQMNDLS-------GKLPPEIGLLP 389
             TG  P S+ +LR ++ L +  N +S E+   + L   + +LS       G +P  I    
Sbjct:   349 TGEFPQSITNLRNLTVLTVGFNNISGELPADLGLLTNLRNLSAHDNLLTGPIPSSISNCT 408

Query:   390 KLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNXXXXXXXXXXXXXX 449
              L+ L L  N+ +G IP+  G + NL  + +  N F G IP  I N              
Sbjct:   409 GLKLLDLSHNQMTGEIPRGFGRM-NLTFISIGRNHFTGEIPDDIFNCSNLETLSVADNNL 467

Query:   450 TGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPP--GICRGGNLIYLTANVNKLVGPI 507
             TGTL P IG  +       LR +  SYN+ +G +P   G  +  N++YL +N     G I
Sbjct:   468 TGTLKPLIGKLQK------LRILQVSYNSLTGPIPREIGNLKDLNILYLHSN--GFTGRI 519

Query:   508 PESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSN 567
             P  + N T L  +R+  N L+G I   +     L  +DL +N+ SG + + + K  +L+ 
Sbjct:   520 PREMSNLTLLQGLRMYSNDLEGPIPEEMFDMKLLSVLDLSNNKFSGQIPALFSKLESLTY 579

Query:   568 FRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRS--SFLIRLNLRRNQLSD 625
               + GN+  G IPA L +L+ L   DI DN LTG IP +L  S  +  + LN   N L+ 
Sbjct:   580 LSLQGNKFNGSIPASLKSLSLLNTFDISDNLLTGTIPGELLASLKNMQLYLNFSNNLLTG 639

Query:   626 KIPAEIGKLSRLQYLD 641
              IP E+GKL  +Q +D
Sbjct:   640 TIPKELGKLEMVQEID 655

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0004713 "protein tyrosine kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016301 "kinase activity" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0004675 "transmembrane receptor protein serine/threonine kinase activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS;IDA

GO:0016045 "detection of bacterium" evidence=IMP

GO:0005886 "plasma membrane" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0042742 "defense response to bacterium" evidence=RCA;IMP

GO:0052544 "defense response by callose deposition in cell wall" evidence=IMP

GO:0010359 "regulation of anion channel activity" evidence=IMP

GO:0016310 "phosphorylation" evidence=RCA

GO:0005768 "endosome" evidence=IDA

GO:0006898 "receptor-mediated endocytosis" evidence=IDA

TAIR|locus:2085949 AT3G24240 [Arabidopsis thaliana (taxid:3702)]

 Score = 685 (246.2 bits), Expect = 1.2e-66, P = 1.2e-66
 Identities = 189/579 (32%), Positives = 277/579 (47%)

Query:    64 SISEINLANSGLDGTLDGFDFSAFPXXXXXXXXXXXXVGSIPAGIGNATKLILLDLSSNN 123
             S+ ++ ++ + L GTL                     VG IP  +     L  L L+SN 
Sbjct:   106 SLQKLTISGANLTGTLPE-SLGDCLGLKVLDLSSNGLVGDIPWSLSKLRNLETLILNSNQ 164

Query:   124 LTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANY-LEDPDPVKFKG 182
             LT  IPP+I   S L+ L+L++N LTG IP +L  L    ++RIG N  +    P +   
Sbjct:   165 LTGKIPPDISKCSKLKSLILFDNLLTGSIPTELGKLSGLEVIRIGGNKEISGQIPSEIGD 224

Query:   183 MASLTDLWL-DYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTK 241
              ++LT L L + ++    PS + +  KL  L +   +I G IP + L +   L  L L +
Sbjct:   225 CSNLTVLGLAETSVSGNLPSSLGKLKKLETLSIYTTMISGEIPSD-LGNCSELVDLFLYE 283

Query:   242 NSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSXX 301
             NS  G IPREI    KL  L L QN L G IP+EIG  SNL++++   NL  G IPSS  
Sbjct:   284 NSLSGSIPREIGQLTKLEQLFLWQNSLVGGIPEEIGNCSNLKMIDLSLNLLSGSIPSSIG 343

Query:   302 XXXXXXXXXXKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISN 361
                            + SIP  +  C++L  L+L  N ++G +P  L +L +++     +
Sbjct:   344 RLSFLEEFMISDNKFSGSIPTTISNCSSLVQLQLDKNQISGLIPSELGTLTKLTLFFAWS 403

Query:   362 NQL-----------SEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIG 410
             NQL           +++ +L L  N L+G +P  + +L  L  L L  N  SG IPQ+IG
Sbjct:   404 NQLEGSIPPGLADCTDLQALDLSRNSLTGTIPSGLFMLRNLTKLLLISNSLSGFIPQEIG 463

Query:   411 NLTNLFDLQLANNFFNGSIPSTIGNXXXXXXXXXXXXXXTGTLPPEIGNSKSDFGPRFLR 470
             N ++L  L+L  N   G IPS IG+               G +P EIG+         L+
Sbjct:   464 NCSSLVRLRLGFNRITGEIPSGIGSLKKINFLDFSSNRLHGKVPDEIGSCSE------LQ 517

Query:   471 NVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGD 530
              +  S N+  G LP  +     L  L  + N+  G IP SL     L ++ L +N   G 
Sbjct:   518 MIDLSNNSLEGSLPNPVSSLSGLQVLDVSANQFSGKIPASLGRLVSLNKLILSKNLFSGS 577

Query:   531 ITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLS-NFRISGNRIKGGIPAELGNLTYL 589
             I  +LG+   LQ +DLG N+LSG + S  G   NL     +S NR+ G IP+++ +L  L
Sbjct:   578 IPTSLGMCSGLQLLDLGSNELSGEIPSELGDIENLEIALNLSSNRLTGKIPSKIASLNKL 637

Query:   590 QNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIP 628
               LD+  N L G + A L     L+ LN+  N  S  +P
Sbjct:   638 SILDLSHNMLEGDL-APLANIENLVSLNISYNSFSGYLP 675

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0000041 "transition metal ion transport" evidence=RCA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0010359 "regulation of anion channel activity" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

TAIR|locus:2154344 AT5G48940 [Arabidopsis thaliana (taxid:3702)]

 Score = 677 (243.4 bits), Expect = 8.7e-66, P = 8.7e-66
 Identities = 204/649 (31%), Positives = 306/649 (47%)

Query:     9 LILSYVVVQISAQ-KEAKAXXXXXXXXXXXXXXXWTAIN-SNSGPCNWNGIQCNEVGS-- 64
             L L++ +   SA   E  A               ++  N S+S PC W  I C+   +  
Sbjct:    24 LFLAFFISSTSASTNEVSALISWLHSSNSPPPSVFSGWNPSDSDPCQWPYITCSSSDNKL 83

Query:    65 ISEINLANSGLDGTLDGFDFSAFPXXXXXXXXXXXXVGSIPAGIGNATKLILLDLSSNNL 124
             ++EIN+ +  L       + S+F              G+I + IG+ ++LI++DLSSN+L
Sbjct:    84 VTEINVVSVQLALPFPP-NISSFTSLQKLVISNTNLTGAISSEIGDCSELIVIDLSSNSL 142

Query:   125 TNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMA 184
                IP  +G L +L+ L L +N LTG+IP +L +  +   L I  NYL +  P++   ++
Sbjct:   143 VGEIPSSLGKLKNLQELCLNSNGLTGKIPPELGDCVSLKNLEIFDNYLSENLPLELGKIS 202

Query:   185 SLTDLWLDYN--LLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKN 242
             +L  +    N  L  K P  I  C  L  L L+   I G +P+  L  L  L+ L++   
Sbjct:   203 TLESIRAGGNSELSGKIPEEIGNCRNLKVLGLAATKISGSLPVS-LGQLSKLQSLSVYST 261

Query:   243 SFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSXXX 302
                GEIP+E+    +L +L L  N L+GT+P E+G L NLE +   +N  HG IP     
Sbjct:   262 MLSGEIPKELGNCSELINLFLYDNDLSGTLPKELGKLQNLEKMLLWQNNLHGPIPEEIGF 321

Query:   303 XXXXXXXXXKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNN 362
                           + +IPK  G  +NL  L LS NN+TGS+P    S+       +SN 
Sbjct:   322 MKSLNAIDLSMNYFSGTIPKSFGNLSNLQELMLSSNNITGSIP----SI-------LSN- 369

Query:   363 QLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLAN 422
               ++++  Q+  N +SG +PPEIGLL +L     + NK  G IP ++    NL  L L+ 
Sbjct:   370 -CTKLVQFQIDANQISGLIPPEIGLLKELNIFLGWQNKLEGNIPDELAGCQNLQALDLSQ 428

Query:   423 NFFNGSIPSTIGNXXXXXXXXXXXXXXTGTLPPEIGNSKS---------------DFGPR 467
             N+  GS+P+ +                +G +P EIGN  S                 G  
Sbjct:   429 NYLTGSLPAGLFQLRNLTKLLLISNAISGVIPLEIGNCTSLVRLRLVNNRITGEIPKGIG 488

Query:   468 FLRNVSF---SYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQ 524
             FL+N+SF   S NN SG +P  I     L  L  + N L G +P SL + T L  + +  
Sbjct:   489 FLQNLSFLDLSENNLSGPVPLEISNCRQLQMLNLSNNTLQGYLPLSLSSLTKLQVLDVSS 548

Query:   525 NRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELG 584
             N L G I ++LG    L  + L  N  +G + S+ G CTNL    +S N I G IP EL 
Sbjct:   549 NDLTGKIPDSLGHLISLNRLILSKNSFNGEIPSSLGHCTNLQLLDLSSNNISGTIPEELF 608

Query:   585 NLTYLQ-NLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIPAEIG 632
             ++  L   L++  N L G IP ++   + L  L++  N LS  + A  G
Sbjct:   609 DIQDLDIALNLSWNSLDGFIPERISALNRLSVLDISHNMLSGDLSALSG 657

GO:0004672 "protein kinase activity" evidence=IEA

GO:0004674 "protein serine/threonine kinase activity" evidence=IEA;ISS

GO:0005524 "ATP binding" evidence=IEA;ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006468 "protein phosphorylation" evidence=IEA;ISS

GO:0007169 "transmembrane receptor protein tyrosine kinase signaling pathway" evidence=ISS

GO:0016772 "transferase activity, transferring phosphorus-containing groups" evidence=IEA

GO:0002237 "response to molecule of bacterial origin" evidence=RCA

GO:0007165 "signal transduction" evidence=RCA

GO:0010103 "stomatal complex morphogenesis" evidence=RCA

GO:0048443 "stamen development" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Fail to connect to STRING server

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Length	Definition	E-value
Query	641
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	3e-89
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	6e-57
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	8e-52
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	2e-34
PLN00113	968	PLN00113, PLN00113, leucine-rich repeat receptor-l	4e-34
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-17
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-14
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-12
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-11
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	4e-10
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	6e-09
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-08
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-08
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	4e-07
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-06
pfam08263	42	pfam08263, LRRNT_2, Leucine rich repeat N-terminal	1e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	2e-06
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	3e-06
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	7e-06
PLN03210	1153	PLN03210, PLN03210, Resistant to P	1e-05
pfam13855	60	pfam13855, LRR_8, Leucine rich repeat	7e-05
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	1e-04
COG4886	394	COG4886, COG4886, Leucine-rich repeat (LRR) protei	1e-04
PLN03150	623	PLN03150, PLN03150, hypothetical protein; Provisio	3e-04
COG5238	388	COG5238, RNA1, Ran GTPase-activating protein (RanG	0.001
cd00116	319	cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribo	0.002

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  297 bits (762), Expect = 3e-89
 Identities = 212/636 (33%), Positives = 312/636 (49%), Gaps = 80/636 (12%)

Query: 5   TLHFLILSYVVVQISAQKEAKALLNWKSSLVSSS--LPSWTAINSNSGPCNWNGIQCNEV 62
            L FL L++    +   +E + LL++KSS+      L +W   NS++  C W GI CN  
Sbjct: 15  MLFFLFLNF---SMLHAEELELLLSFKSSINDPLKYLSNW---NSSADVCLWQGITCNNS 68

Query: 63  GSISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGI-GNATKLILLDLSS 121
             +  I+L+   + G +    F   P +  +NL+ N L G IP  I   ++ L  L+LS+
Sbjct: 69  SRVVSIDLSGKNISGKISSAIFR-LPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSN 127

Query: 122 NNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFK 181
           NN T  IP   G + +L  L L NN L+G+IP+                           
Sbjct: 128 NNFTGSIPR--GSIPNLETLDLSNNMLSGEIPND-------------------------- 159

Query: 182 GMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTK 241
                                I   S L  LDL  N+++G IP   LT+L +LE+L L  
Sbjct: 160 ---------------------IGSFSSLKVLDLGGNVLVGKIPN-SLTNLTSLEFLTLAS 197

Query: 242 NSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLG 301
           N   G+IPRE+     L+ + LG N L+G IP EIG L++L  L+   N   G IPSSLG
Sbjct: 198 NQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLG 257

Query: 302 NLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISN 361
           NL+ LQ L L    L+  IP  +     L  L+LS N+L+G +P  +  L+ +       
Sbjct: 258 NLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNL------- 310

Query: 362 NQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLA 421
               EI  L L  N+ +GK+P  +  LP+L+ L L+ NKFSG IP+ +G   NL  L L+
Sbjct: 311 ----EI--LHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLS 364

Query: 422 NNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSG 481
            N   G IP  + +  +L KL L SN L G +P  +G  +S      LR V    N+FSG
Sbjct: 365 TNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRS------LRRVRLQDNSFSG 418

Query: 482 KLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDL 541
           +LP    +   + +L  + N L G I    W+   L  + L +N+  G + ++ G    L
Sbjct: 419 ELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFG-SKRL 477

Query: 542 QYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTG 601
           + +DL  NQ SG +    G  + L   ++S N++ G IP EL +   L +LD+  NQL+G
Sbjct: 478 ENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSG 537

Query: 602 KIPAQLFRSSFLIRLNLRRNQLSDKIPAEIGKLSRL 637
           +IPA       L +L+L +NQLS +IP  +G +  L
Sbjct: 538 QIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESL 573

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  207 bits (528), Expect = 6e-57
 Identities = 161/463 (34%), Positives = 223/463 (48%), Gaps = 68/463 (14%)

Query: 60  NEVGSISEINLANSGLDGTLDGFDFSAFPNLTAL---NLNMNNLVGSIPAGIGNATKLIL 116
           N++GS S + + + G    L G   ++  NLT+L    L  N LVG IP  +G    L  
Sbjct: 158 NDIGSFSSLKVLDLG-GNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKW 216

Query: 117 LDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPD 176
           + L  NNL+  IP EIG L+ L  L L  N+LTG IP  L NL+N   L +  N L  P 
Sbjct: 217 IYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPI 276

Query: 177 PVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEY 236
           P                      PS I    KL+ LDLSDN + G IP E +  L+NLE 
Sbjct: 277 P----------------------PS-IFSLQKLISLDLSDNSLSGEIP-ELVIQLQNLEI 312

Query: 237 LNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLI 296
           L+L  N+F G+IP  + + P+L+ L+L  NK +G IP  +G  +NL +L+   N   G I
Sbjct: 313 LHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEI 372

Query: 297 PSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISE 356
           P  L +   L +L L S  L   IPK LG C +L  + L  N+ +G LP     L  +  
Sbjct: 373 PEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYF 432

Query: 357 LGISNNQLSEIISL------QLQM----------------------------NDLSGKLP 382
           L ISNN L   I+        LQM                            N  SG +P
Sbjct: 433 LDISNNNLQGRINSRKWDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVP 492

Query: 383 PEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKL 442
            ++G L +L  L L +NK SG IP ++ +   L  L L++N  +G IP++   +  L +L
Sbjct: 493 RKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQL 552

Query: 443 SLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPP 485
            LS NQL+G +P  +GN +S      L  V+ S+N+  G LP 
Sbjct: 553 DLSQNQLSGEIPKNLGNVES------LVQVNISHNHLHGSLPS 589

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  192 bits (489), Expect = 8e-52
 Identities = 148/477 (31%), Positives = 213/477 (44%), Gaps = 116/477 (24%)

Query: 212 LDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGT 271
           ++LS+N + G IP +  T   +L YLNL+ N+F G IPR   + P L  L L  N L+G 
Sbjct: 98  INLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGE 155

Query: 272 IPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLT 331
           IP++IG  S+L++L+   N+  G IP+SL NL  L+ L L S  L   IP+ELG   +L 
Sbjct: 156 IPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLK 215

Query: 332 FLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKL 391
           ++ L  NNL+G +P          E+G     L+ +  L L  N+L+G +P  +G L  L
Sbjct: 216 WIYLGYNNLSGEIP---------YEIG----GLTSLNHLDLVYNNLTGPIPSSLGNLKNL 262

Query: 392 EYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTG 451
           +YL+L+ NK SGPIP  I +L  L  L L++N  +G IP  +  L +L  L L SN    
Sbjct: 263 QYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSN---- 318

Query: 452 TLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESL 511
                                     NF+GK                        IP +L
Sbjct: 319 --------------------------NFTGK------------------------IPVAL 328

Query: 512 WNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSG---------------VLT 556
            +   L  ++L  N+  G+I   LG + +L  +DL  N L+G               +L 
Sbjct: 329 TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILF 388

Query: 557 SN---------WGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPA-- 605
           SN          G C +L   R+  N   G +P+E   L  +  LDI +N L G+I +  
Sbjct: 389 SNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRK 448

Query: 606 ---------------------QLFRSSFLIRLNLRRNQLSDKIPAEIGKLSRLQYLD 641
                                  F S  L  L+L RNQ S  +P ++G LS L  L 
Sbjct: 449 WDMPSLQMLSLARNKFFGGLPDSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLK 505

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  139 bits (353), Expect = 2e-34
 Identities = 104/285 (36%), Positives = 148/285 (51%), Gaps = 33/285 (11%)

Query: 357 LGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLT-NL 415
            GI+ N  S ++S+ L   ++SGK+   I  LP ++ + L +N+ SGPIP  I   + +L
Sbjct: 61  QGITCNNSSRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSL 120

Query: 416 FDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFS 475
             L L+NN F GSIP   G++ +L  L LS+N L+G +P +IG              SFS
Sbjct: 121 RYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIG--------------SFS 164

Query: 476 YNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNAL 535
                           +L  L    N LVG IP SL N T L  + L  N+L G I   L
Sbjct: 165 ----------------SLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPREL 208

Query: 536 GIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIF 595
           G    L++I LG N LSG +    G  T+L++  +  N + G IP+ LGNL  LQ L ++
Sbjct: 209 GQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLY 268

Query: 596 DNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIPAEIGKLSRLQYL 640
            N+L+G IP  +F    LI L+L  N LS +IP  + +L  L+ L
Sbjct: 269 QNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEIL 313

Length = 968

>gnl|CDD|215061 PLN00113, PLN00113, leucine-rich repeat receptor-like protein kinase; Provisional

 Score =  138 bits (350), Expect = 4e-34
 Identities = 91/268 (33%), Positives = 138/268 (51%), Gaps = 3/268 (1%)

Query: 85  SAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLY 144
           ++ P L  L L  N   G IP  +G    L +LDLS+NNLT  IP  +    +L  L+L+
Sbjct: 329 TSLPRLQVLQLWSNKFSGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILF 388

Query: 145 NNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWL-DYNLLEKFPSFI 203
           +NSL G+IP  L   ++   +R+  N      P +F  +  +  L + + NL  +  S  
Sbjct: 389 SNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRK 448

Query: 204 AECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKL 263
            +   L  L L+ N   G +P       + LE L+L++N F G +PR++ +  +L  LKL
Sbjct: 449 WDMPSLQMLSLARNKFFGGLP--DSFGSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKL 506

Query: 264 GQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKE 323
            +NKL+G IPDE+     L  L+   N   G IP+S   +  L +L+L    L+  IPK 
Sbjct: 507 SENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKN 566

Query: 324 LGFCANLTFLELSINNLTGSLPLSLASL 351
           LG   +L  + +S N+L GSLP + A L
Sbjct: 567 LGNVESLVQVNISHNHLHGSLPSTGAFL 594

Length = 968

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 85.6 bits (212), Expect = 2e-17
 Identities = 54/147 (36%), Positives = 75/147 (51%), Gaps = 22/147 (14%)

Query: 23  EAKALLNWKSSLVSSSLPS---WTAINSNSGPC-----NWNGIQC---NEVGS--ISEIN 69
           E  AL   KSSL    LP    W     N  PC      W+G  C   +  G   I  + 
Sbjct: 373 EVSALQTLKSSL---GLPLRFGW-----NGDPCVPQQHPWSGADCQFDSTKGKWFIDGLG 424

Query: 70  LANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIP 129
           L N GL G +   D S   +L ++NL+ N++ G+IP  +G+ T L +LDLS N+    IP
Sbjct: 425 LDNQGLRGFI-PNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIP 483

Query: 130 PEIGYLSDLRVLLLYNNSLTGQIPHQL 156
             +G L+ LR+L L  NSL+G++P  L
Sbjct: 484 ESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 76.4 bits (188), Expect = 2e-14
 Identities = 42/115 (36%), Positives = 63/115 (54%), Gaps = 7/115 (6%)

Query: 367 IISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFN 426
           I  L L    L G +P +I  L  L+ + L  N   G IP  +G++T+L  L L+ N FN
Sbjct: 420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 427 GSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSG 481
           GSIP ++G L+SL  L+L+ N L+G +P  +G        R L   SF++ + +G
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRVPAALGG-------RLLHRASFNFTDNAG 527

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 76.0 bits (187), Expect = 2e-14
 Identities = 35/86 (40%), Positives = 51/86 (59%), Gaps = 1/86 (1%)

Query: 548 DNQ-LSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQ 606
           DNQ L G + ++  K  +L +  +SGN I+G IP  LG++T L+ LD+  N   G IP  
Sbjct: 426 DNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPES 485

Query: 607 LFRSSFLIRLNLRRNQLSDKIPAEIG 632
           L + + L  LNL  N LS ++PA +G
Sbjct: 486 LGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 68.7 bits (168), Expect = 4e-12
 Identities = 33/89 (37%), Positives = 47/89 (52%)

Query: 237 LNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLI 296
           L L      G IP +I     L+ + L  N + G IP  +G +++LE+L+   N F+G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 297 PSSLGNLRRLQRLNLKSAGLNSSIPKELG 325
           P SLG L  L+ LNL    L+  +P  LG
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 67.1 bits (164), Expect = 1e-11
 Identities = 33/92 (35%), Positives = 51/92 (55%), Gaps = 5/92 (5%)

Query: 212 LDLSDNLIMGHIP--IEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLT 269
           L L +  + G IP  I +L HL+++   NL+ NS  G IP  + +   L  L L  N   
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSI---NLSGNSIRGNIPPSLGSITSLEVLDLSYNSFN 479

Query: 270 GTIPDEIGLLSNLEILEFHENLFHGLIPSSLG 301
           G+IP+ +G L++L IL  + N   G +P++LG
Sbjct: 480 GSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 62.1 bits (151), Expect = 4e-10
 Identities = 33/91 (36%), Positives = 49/91 (53%)

Query: 261 LKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSI 320
           L L    L G IP++I  L +L+ +    N   G IP SLG++  L+ L+L     N SI
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 321 PKELGFCANLTFLELSINNLTGSLPLSLASL 351
           P+ LG   +L  L L+ N+L+G +P +L   
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAALGGR 513

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 58.7 bits (142), Expect = 6e-09
 Identities = 33/96 (34%), Positives = 47/96 (48%), Gaps = 13/96 (13%)

Query: 294 GLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQ 353
           G IP+ +  LR LQ +NL    +  +IP  LG   +L  L+LS N+  GS+P SL     
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLG---- 487

Query: 354 ISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLP 389
                    QL+ +  L L  N LSG++P  +G   
Sbjct: 488 ---------QLTSLRILNLNGNSLSGRVPAALGGRL 514

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.9 bits (140), Expect = 1e-08
 Identities = 31/88 (35%), Positives = 46/88 (52%)

Query: 520 VRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGI 579
           + L+   L G I N +     LQ I+L  N + G +  + G  T+L    +S N   G I
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSI 482

Query: 580 PAELGNLTYLQNLDIFDNQLTGKIPAQL 607
           P  LG LT L+ L++  N L+G++PA L
Sbjct: 483 PESLGQLTSLRILNLNGNSLSGRVPAAL 510

Length = 623

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 57.1 bits (138), Expect = 2e-08
 Identities = 32/102 (31%), Positives = 52/102 (50%), Gaps = 15/102 (14%)

Query: 335 LSINN--LTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLE 392
           L ++N  L G +P  ++ LR +  + +S N +              G +PP +G +  LE
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIR-------------GNIPPSLGSITSLE 469

Query: 393 YLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIG 434
            L L  N F+G IP+ +G LT+L  L L  N  +G +P+ +G
Sbjct: 470 VLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 52.3 bits (125), Expect = 4e-07
 Identities = 85/342 (24%), Positives = 139/342 (40%), Gaps = 17/342 (4%)

Query: 60  NEVGSISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDL 119
           + +  +  ++L +     +LDG +               N + S  + +   T L  LDL
Sbjct: 64  SSLSRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLELTNLTSLDL 123

Query: 120 SSNNLTNPIPPEIGYLSD-LRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPV 178
            +NN+T+ IPP IG L   L+ L L +N +   +P  L NL N   L +  N L D   +
Sbjct: 124 DNNNITD-IPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKNLDLSFNDLSDLPKL 181

Query: 179 KFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLN 238
               +++L +L L  N +   P  I   S L  LDLS+N I+    +  L++L+NL  L 
Sbjct: 182 LSN-LSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII--ELLSSLSNLKNLSGLE 238

Query: 239 LTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPS 298
           L+ N  E ++P  I     L  L L  N++  +    +G L+NL  L+   N     +P 
Sbjct: 239 LSNNKLE-DLPESIGNLSNLETLDLSNNQI--SSISSLGSLTNLRELDLSGNSLSNALPL 295

Query: 299 SLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTG-----SLPLSLASLRQ 353
               L  L+ L      L +    EL   + L    +  N  T      S+  SL +L  
Sbjct: 296 IALLLLLLELLLNL---LLTLKALELKLNSILLNNNILSNGETSSPEALSILESLNNLWT 352

Query: 354 ISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLY 395
           +      +N    I+     +  L   +   +  L +     
Sbjct: 353 LDNALDESNLNRYIVKNPNAIGSLLDLVKKHVNQLLEKVNYN 394

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 51.4 bits (123), Expect = 1e-06
 Identities = 37/119 (31%), Positives = 49/119 (41%), Gaps = 30/119 (25%)

Query: 418 LQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYN 477
           L L N    G IP+ I  L  L  ++LS N + G +PP +G+  S      L  +  SYN
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITS------LEVLDLSYN 476

Query: 478 NFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALG 536
           +F+G                         IPESL   T L  + L  N L G +  ALG
Sbjct: 477 SFNGS------------------------IPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|219766 pfam08263, LRRNT_2, Leucine rich repeat N-terminal domain

 Score = 45.0 bits (107), Expect = 1e-06
 Identities = 18/41 (43%), Positives = 25/41 (60%), Gaps = 5/41 (12%)

Query: 23 EAKALLNWKSSLV---SSSLPSWTAINSNSGPCNWNGIQCN 60
          +  ALL +KSSL    S +L SW    S+S PC+W G+ C+
Sbjct: 4  DRDALLAFKSSLNGDPSGALSSWN--PSSSDPCSWTGVTCD 42

Leucine Rich Repeats pfam00560 are short sequence motifs present in a number of proteins with diverse functions and cellular locations. Leucine Rich Repeats are often flanked by cysteine rich domains. This domain is often found at the N-terminus of tandem leucine rich repeats. Length = 42

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 50.6 bits (121), Expect = 2e-06
 Identities = 30/102 (29%), Positives = 47/102 (46%), Gaps = 13/102 (12%)

Query: 309 LNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEII 368
           L L + GL   IP ++    +L  + LS N++ G++P SL S             ++ + 
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGS-------------ITSLE 469

Query: 369 SLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIG 410
            L L  N  +G +P  +G L  L  L L  N  SG +P  +G
Sbjct: 470 VLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 49.6 bits (118), Expect = 3e-06
 Identities = 57/163 (34%), Positives = 83/163 (50%), Gaps = 12/163 (7%)

Query: 297 PSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISE 356
            S L  L  L  L+L +  +    P      +NL  L+LS N +  SLP  L +L  +  
Sbjct: 109 ISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLPNLKN 167

Query: 357 LGISNNQLSEIISLQLQMNDLS---------GKLPPEIGLLPKLEYLYLFDNKFSGPIPQ 407
           L +S N LS++  L   +++L+           LPPEI LL  LE L L +N     +  
Sbjct: 168 LDLSFNDLSDLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNNSII-ELLS 226

Query: 408 QIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLT 450
            + NL NL  L+L+NN     +P +IGNLS+L  L LS+NQ++
Sbjct: 227 SLSNLKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQIS 268

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 48.7 bits (116), Expect = 7e-06
 Identities = 26/82 (31%), Positives = 42/82 (51%)

Query: 503 LVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKC 562
           L G IP  +     L  + L  N + G+I  +LG    L+ +DL  N  +G +  + G+ 
Sbjct: 430 LRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQL 489

Query: 563 TNLSNFRISGNRIKGGIPAELG 584
           T+L    ++GN + G +PA LG
Sbjct: 490 TSLRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|215633 PLN03210, PLN03210, Resistant to P

 Score = 47.9 bits (114), Expect = 1e-05
 Identities = 97/377 (25%), Positives = 151/377 (40%), Gaps = 57/377 (15%)

Query: 180 FKGMASL------TDLW-----LDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQL 228
           FKGM +L      T  W     + ++L E F        KL  L   D   +  +P    
Sbjct: 554 FKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLP---PKLRLLRW-DKYPLRCMPSN-- 607

Query: 229 THLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFH 288
              ENL  L +  +  E ++   + +   LR++ L  +K    IPD + + +NLE L+  
Sbjct: 608 FRPENLVKLQMQGSKLE-KLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLS 665

Query: 289 ENLFHGLIPSSLGNLRRLQRL---------------NLKSAG-LNSSIPKELGFCANL-T 331
           +      +PSS+  L +L+ L               NLKS   LN      L  C+ L +
Sbjct: 666 DCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGINLKSLYRLN------LSGCSRLKS 719

Query: 332 FLELSINNLTGSLPLSLASLRQI-SELGISNNQLSEIISLQLQMNDLSGKLPPEIGLL-- 388
           F ++S N     L L   ++ +  S L + N  L E+I  +++   L  ++ P   L+  
Sbjct: 720 FPDISTN--ISWLDLDETAIEEFPSNLRLEN--LDELILCEMKSEKLWERVQPLTPLMTM 775

Query: 389 --PKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSS 446
             P L  L+L D      +P  I NL  L  L++ N     ++P+ I NL SL  L LS 
Sbjct: 776 LSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSG 834

Query: 447 NQLTGTLPPEIGNSKSDFGPRF-LRNVSFSYNNFSGKLPPGICRGG--NLIYLTANVNKL 503
                T P    N       R  +  V +    FS      +   G  NL  ++ N++KL
Sbjct: 835 CSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFS--NLSFLDMNGCNNLQRVSLNISKL 892

Query: 504 VGPIPESLWNCTGLTRV 520
                    +C  LT  
Sbjct: 893 KHLETVDFSDCGALTEA 909

syringae 6; Provisional. Length = 1153

>gnl|CDD|206026 pfam13855, LRR_8, Leucine rich repeat

 Score = 40.6 bits (96), Expect = 7e-05
 Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 1/61 (1%)

Query: 208 KLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNK 267
            L  LDLS+N +   IP      L NL+ L+L+ N+     P      P LR L L  N 
Sbjct: 1   NLKSLDLSNNRL-TVIPDGAFKGLPNLKVLDLSGNNLTSISPEAFSGLPSLRSLDLSGNN 59

Query: 268 L 268
           L
Sbjct: 60  L 60

Length = 60

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 44.8 bits (106), Expect = 1e-04
 Identities = 25/80 (31%), Positives = 40/80 (50%)

Query: 481 GKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPD 540
           G +P  I +  +L  +  + N + G IP SL + T L  + L  N  +G I  +LG    
Sbjct: 432 GFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTS 491

Query: 541 LQYIDLGDNQLSGVLTSNWG 560
           L+ ++L  N LSG + +  G
Sbjct: 492 LRILNLNGNSLSGRVPAALG 511

Length = 623

>gnl|CDD|227223 COG4886, COG4886, Leucine-rich repeat (LRR) protein [Function unknown]

 Score = 44.6 bits (105), Expect = 1e-04
 Identities = 54/231 (23%), Positives = 89/231 (38%), Gaps = 14/231 (6%)

Query: 411 NLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLR 470
           +     DL   +   +      + NL  L  L L+ N+L   +   +  +          
Sbjct: 67  SRLLSLDLLSPSGISSLDGSENLLNLLPLPSLDLNLNRLRSNISELLELTNL-TSLDLDN 125

Query: 471 NVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGD 530
           N         G L   +        L  + NK+   +P  L N   L  + L  N L  D
Sbjct: 126 NNITDIPPLIGLLKSNLK------ELDLSDNKI-ESLPSPLRNLPNLKNLDLSFNDLS-D 177

Query: 531 ITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQ 590
           +   L    +L  +DL  N++S  L       + L    +S N I   + + L NL  L 
Sbjct: 178 LPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIE-LLSSLSNLKNLS 235

Query: 591 NLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIPAEIGKLSRLQYLD 641
            L++ +N+L   +P  +   S L  L+L  NQ+S    + +G L+ L+ LD
Sbjct: 236 GLELSNNKLE-DLPESIGNLSNLETLDLSNNQISS--ISSLGSLTNLRELD 283

Length = 394

>gnl|CDD|178695 PLN03150, PLN03150, hypothetical protein; Provisional

 Score = 43.7 bits (103), Expect = 3e-04
 Identities = 32/109 (29%), Positives = 42/109 (38%), Gaps = 24/109 (22%)

Query: 141 LLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFP 200
           L L N  L G IP+ +S L++   + +  N +    P     + SL              
Sbjct: 423 LGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLE------------- 469

Query: 201 SFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIP 249
                      LDLS N   G IP E L  L +L  LNL  NS  G +P
Sbjct: 470 ----------VLDLSYNSFNGSIP-ESLGQLTSLRILNLNGNSLSGRVP 507

Length = 623

>gnl|CDD|227563 COG5238, RNA1, Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

 Score = 41.5 bits (97), Expect = 0.001
 Identities = 42/183 (22%), Positives = 71/183 (38%), Gaps = 35/183 (19%)

Query: 203 IAECSKLMFLDLSDNLIMGHIP---IEQLTHLENLEYLNLTKNS-------------FEG 246
           + +C +L  +DLSDN      P    + ++   +L +L L  N              F  
Sbjct: 88  LLKCPRLQKVDLSDNAFGSEFPEELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHL 147

Query: 247 EIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRL 306
              ++    PKL  +  G+N+L     +    L     LE HENL             ++
Sbjct: 148 AYNKKAADKPKLEVVICGRNRLENGSKELSAAL-----LESHENL----------KEVKI 192

Query: 307 QRLNLKSAGLNSSIPKELGFCANLTFLELSINNLT--GSLPLSLA--SLRQISELGISNN 362
           Q+  ++  G+       L +  +L  L+L  N  T  GS  L+ A      + EL +++ 
Sbjct: 193 QQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDC 252

Query: 363 QLS 365
            LS
Sbjct: 253 LLS 255

Length = 388

>gnl|CDD|238064 cd00116, LRR_RI, Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

 Score = 40.4 bits (95), Expect = 0.002
 Identities = 65/279 (23%), Positives = 89/279 (31%), Gaps = 63/279 (22%)

Query: 88  PNLTALNLNMNNL------VGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYL---SDL 138
           P+L  L L++N        + S+  G+     L  LDLS N L       +  L   S L
Sbjct: 51  PSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSL 110

Query: 139 RVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEK 198
           + L L NN L  +             LR+ A  L+D  P       +L  L L  N LE 
Sbjct: 111 QELKLNNNGLGDRG------------LRLLAKGLKDLPP-------ALEKLVLGRNRLEG 151

Query: 199 FPSFIA-----ECSKLMFLDLSDNLIMG---HIPIEQLTHLENLEYLNLTKNSFEGE--- 247
                          L  L+L++N I         E L    NLE L+L  N    E   
Sbjct: 152 ASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGAS 211

Query: 248 -IPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRL 306
            +   + +   L  L LG N LT           +         L    I         L
Sbjct: 212 ALAETLASLKSLEVLNLGDNNLT-----------DAGAAALASALLSPNI--------SL 252

Query: 307 QRLNLKSAGL-NSSIPKELGFCAN---LTFLELSINNLT 341
             L+L    + +          A    L  L+L  N   
Sbjct: 253 LTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFG 291

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1). Length = 319

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	641
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
PLN00113	968	leucine-rich repeat receptor-like protein kinase;	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG0472	565	consensus Leucine-rich repeat protein [Function un	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG4194	873	consensus Membrane glycoprotein LIG-1 [Signal tran	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	100.0
KOG0618	1081	consensus Serine/threonine phosphatase 2C containi	99.98
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
KOG0444	1255	consensus Cytoskeletal regulator Flightless-I (con	99.97
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.92
PLN03210	1153	Resistant to P. syringae 6; Provisional	99.92
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.88
KOG4237	498	consensus Extracellular matrix protein slit, conta	99.87
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.85
PRK15387	788	E3 ubiquitin-protein ligase SspH2; Provisional	99.81
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.77
PRK15370	754	E3 ubiquitin-protein ligase SlrP; Provisional	99.76
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.76
cd00116	319	LRR_RI Leucine-rich repeats (LRRs), ribonuclease i	99.74
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.7
KOG0617	264	consensus Ras suppressor protein (contains leucine	99.64
PLN03150	623	hypothetical protein; Provisional	99.52
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.21
KOG0532	722	consensus Leucine-rich repeat (LRR) protein, conta	99.2
PLN03150	623	hypothetical protein; Provisional	99.13
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	99.12
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.12
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.12
KOG1909	382	consensus Ran GTPase-activating protein [RNA proce	99.11
COG4886	394	Leucine-rich repeat (LRR) protein [Function unknow	99.1
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.1
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.06
PF14580	175	LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQ	99.06
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.03
KOG3207	505	consensus Beta-tubulin folding cofactor E [Posttra	99.01
KOG1259	490	consensus Nischarin, modulator of integrin alpha5	99.01
KOG4658	889	consensus Apoptotic ATPase [Signal transduction me	98.95
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.75
PF13855	61	LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RF	98.69
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.67
KOG0531	414	consensus Protein phosphatase 1, regulatory subuni	98.63
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.56
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.51
KOG2120	419	consensus SCF ubiquitin ligase, Skp2 component [Po	98.5
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.47
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	98.45
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.33
KOG2982	418	consensus Uncharacterized conserved protein [Funct	98.32
PF08263	43	LRRNT_2: Leucine rich repeat N-terminal domain; In	98.32
COG5238	388	RNA1 Ran GTPase-activating protein (RanGAP) involv	98.2
KOG1859	1096	consensus Leucine-rich repeat proteins [General fu	98.14
KOG4341	483	consensus F-box protein containing LRR [General fu	97.93
PRK15386	426	type III secretion protein GogB; Provisional	97.92
PRK15386	426	type III secretion protein GogB; Provisional	97.91
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.91
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.85
KOG4579	177	consensus Leucine-rich repeat (LRR) protein associ	97.83
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.71
PF12799	44	LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_	97.64
KOG4341	483	consensus F-box protein containing LRR [General fu	97.62
KOG3665	699	consensus ZYG-1-like serine/threonine protein kina	97.57
KOG1644	233	consensus U2-associated snRNP A' protein [RNA proc	97.56
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.23
PF13306	129	LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_	97.16
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.99
KOG2739	260	consensus Leucine-rich acidic nuclear protein [Cel	96.77
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.7
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.55
KOG1947	482	consensus Leucine rich repeat proteins, some prote	96.44
KOG2123	388	consensus Uncharacterized conserved protein [Funct	96.27
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	95.32
PF00560	22	LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Le	94.77
KOG4308	478	consensus LRR-containing protein [Function unknown	94.19
KOG4308	478	consensus LRR-containing protein [Function unknown	92.45
KOG3864	221	consensus Uncharacterized conserved protein [Funct	91.95
PF13504	17	LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OO	91.4
smart00370	26	LRR Leucine-rich repeats, outliers.	88.84
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	88.84
PF13516	24	LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RI	88.43
KOG3864	221	consensus Uncharacterized conserved protein [Funct	86.09
KOG0473	326	consensus Leucine-rich repeat protein [Function un	85.31
KOG0473	326	consensus Leucine-rich repeat protein [Function un	85.07
smart00370	26	LRR Leucine-rich repeats, outliers.	84.44
smart00369	26	LRR_TYP Leucine-rich repeats, typical (most popula	84.44

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=5.2e-68  Score=613.59  Aligned_cols=579  Identities=31%  Similarity=0.496  Sum_probs=516.6

Q ss_pred             CcHHHHHHHHHHHhcCCCCC--CCCCCCCCCCCCCccccceeeCCCCCEEEEEcCCCCCccccCCcCCCCCCCCCEEECC
Q 036117           19 SAQKEAKALLNWKSSLVSSS--LPSWTAINSNSGPCNWNGIQCNEVGSISEINLANSGLDGTLDGFDFSAFPNLTALNLN   96 (641)
Q Consensus        19 ~~~~~~~~l~~~~~~~~~~~--~~~W~~~~~~~~~c~~~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~   96 (641)
                      ..++|+.||++||+++..+.  ..+|...   .+||.|.|+.|+..++|+.|+++++++.+.++ ..|..+++|++|+|+
T Consensus        26 ~~~~~~~~l~~~~~~~~~~~~~~~~w~~~---~~~c~w~gv~c~~~~~v~~L~L~~~~i~~~~~-~~~~~l~~L~~L~Ls  101 (968)
T PLN00113         26 LHAEELELLLSFKSSINDPLKYLSNWNSS---ADVCLWQGITCNNSSRVVSIDLSGKNISGKIS-SAIFRLPYIQTINLS  101 (968)
T ss_pred             CCHHHHHHHHHHHHhCCCCcccCCCCCCC---CCCCcCcceecCCCCcEEEEEecCCCccccCC-hHHhCCCCCCEEECC
Confidence            36689999999999986443  6789654   68999999999988899999999999998887 789999999999999


Q ss_pred             CCCCCccCchhcc-CCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEeccccCCCC
Q 036117           97 MNNLVGSIPAGIG-NATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDP  175 (641)
Q Consensus        97 ~n~~~~~~~~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~  175 (641)
                      +|.+.+.+|..+. .+++|++|++++|.+++.+|.  +.+++|++|++++|.+.+.+|..++++++|++|++++|.+.+.
T Consensus       102 ~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~  179 (968)
T PLN00113        102 NNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGK  179 (968)
T ss_pred             CCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEECcCCcccccCChHHhcCCCCCEEECccCccccc
Confidence            9999988887765 899999999999999988885  5689999999999999999999999999999999999999988


Q ss_pred             CCcccCCCCCCCEEEcCCCCC-CCCchhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCcccccCCcccCC
Q 036117          176 DPVKFKGMASLTDLWLDYNLL-EKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKT  254 (641)
Q Consensus       176 ~~~~l~~l~~L~~L~l~~~~~-~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~  254 (641)
                      .+..+.++++|++|++++|.+ +.+|..+.++++|++|++++|.+.+.+|..+ .++++|++|++++|.+.+.+|..+..
T Consensus       180 ~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n~l~~~~p~~l~~  258 (968)
T PLN00113        180 IPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEI-GGLTSLNHLDLVYNNLTGPIPSSLGN  258 (968)
T ss_pred             CChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhH-hcCCCCCEEECcCceeccccChhHhC
Confidence            899999999999999999998 5778999999999999999999988777654 89999999999999999899999999


Q ss_pred             CCCCCEEEcCCCcCCccCCcccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCccCCCCCCcCCCCCCCCCEEE
Q 036117          255 FPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLE  334 (641)
Q Consensus       255 l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  334 (641)
                      +++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|+.|++++|.+.+..|..+..+++|+.|+
T Consensus       259 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~  338 (968)
T PLN00113        259 LKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVIQLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQ  338 (968)
T ss_pred             CCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHcCCCCCcEEECCCCccCCcCChhHhcCCCCCEEE
Confidence            99999999999999988898899999999999999999999999999999999999999999888888899999999999


Q ss_pred             ccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCchhhhhCCCC
Q 036117          335 LSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTN  414 (641)
Q Consensus       335 l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~  414 (641)
                      +++|.+.+.+|..+..+++|+.|++++             |.+.+.+|..++.+++|+.|++++|.+.+.+|..+..+++
T Consensus       339 L~~n~l~~~~p~~l~~~~~L~~L~Ls~-------------n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~  405 (968)
T PLN00113        339 LWSNKFSGEIPKNLGKHNNLTVLDLST-------------NNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRS  405 (968)
T ss_pred             CcCCCCcCcCChHHhCCCCCcEEECCC-------------CeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCC
Confidence            999999999999999888888888554             4555667888888899999999999999999999999999


Q ss_pred             CCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccccCCCCCc
Q 036117          415 LFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLI  494 (641)
Q Consensus       415 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~  494 (641)
                      |+.|++++|.+++.+|..+..+++|+.+++++|.+++.+|..+..++      +|+.|++++|++.+.+|..+ ..++|+
T Consensus       406 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~------~L~~L~L~~n~~~~~~p~~~-~~~~L~  478 (968)
T PLN00113        406 LRRVRLQDNSFSGELPSEFTKLPLVYFLDISNNNLQGRINSRKWDMP------SLQMLSLARNKFFGGLPDSF-GSKRLE  478 (968)
T ss_pred             CCEEECcCCEeeeECChhHhcCCCCCEEECcCCcccCccChhhccCC------CCcEEECcCceeeeecCccc-ccccce
Confidence            99999999999988898899999999999999999988887777666      89999999999988888755 457899


Q ss_pred             eEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCc
Q 036117          495 YLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNR  574 (641)
Q Consensus       495 ~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~  574 (641)
                      .|++++|++.+.+|..+.++++|+.|++++|.+.+.+|..++.+++|++|+|++|.+++.+|..+..+++|+.|++++|+
T Consensus       479 ~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~  558 (968)
T PLN00113        479 NLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKLVSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQ  558 (968)
T ss_pred             EEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCCCEEECCCCcccccCChhHhCcccCCEEECCCCc
Confidence            99999999999999888999999999999999999999989999999999999999999999999999999999999999


Q ss_pred             CcccCCccccCCCCCCEEeCCCCcCcccCCccccCCCCCCEEeCcCCC-Ccc
Q 036117          575 IKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQ-LSD  625 (641)
Q Consensus       575 l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~~~L~~l~l~~n~-l~~  625 (641)
                      +.+.+|..+.++++|+.|++++|++.|.+|.. ..+..+....+.+|+ ++|
T Consensus       559 l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~-~~~~~~~~~~~~~n~~lc~  609 (968)
T PLN00113        559 LSGEIPKNLGNVESLVQVNISHNHLHGSLPST-GAFLAINASAVAGNIDLCG  609 (968)
T ss_pred             ccccCChhHhcCcccCEEeccCCcceeeCCCc-chhcccChhhhcCCccccC
Confidence            99999999999999999999999999988864 334445555666776 444

>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional

Probab=100.00  E-value=4.6e-59  Score=539.08  Aligned_cols=520  Identities=33%  Similarity=0.540  Sum_probs=489.9

Q ss_pred             CCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccC-CCCCCCEEEcccccCCCCCChhccCCCCCcEEE
Q 036117           88 PNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIG-YLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLR  166 (641)
Q Consensus        88 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~-~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~  166 (641)
                      .+++.|++++|.+.+.++..+..+++|++|++++|.+.+.+|..+. .+++|++|++++|.+++.+|.  ..+++|++|+
T Consensus        69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L~~L~  146 (968)
T PLN00113         69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSGPIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNLETLD  146 (968)
T ss_pred             CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCCcCChHHhccCCCCCEEECcCCccccccCc--cccCCCCEEE
Confidence            4789999999999999999999999999999999999988888765 899999999999999988775  4689999999


Q ss_pred             eccccCCCCCCcccCCCCCCCEEEcCCCCC-CCCchhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCccc
Q 036117          167 IGANYLEDPDPVKFKGMASLTDLWLDYNLL-EKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFE  245 (641)
Q Consensus       167 l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~-~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~  245 (641)
                      +++|.+.+..+..+..+++|++|++++|.+ +.+|..+.++++|++|++++|.+.+.+|.. +.++++|++|++++|.+.
T Consensus       147 Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~  225 (968)
T PLN00113        147 LSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRE-LGQMKSLKWIYLGYNNLS  225 (968)
T ss_pred             CcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChH-HcCcCCccEEECcCCccC
Confidence            999999988899999999999999999998 678999999999999999999998887755 489999999999999999


Q ss_pred             ccCCcccCCCCCCCEEEcCCCcCCccCCcccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCccCCCCCCcCCC
Q 036117          246 GEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELG  325 (641)
Q Consensus       246 ~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~  325 (641)
                      +.+|..+..+++|++|++++|.+.+.+|..++.+++|++|++++|.+.+..|..+..+++|++|++++|.+.+.+|..+.
T Consensus       226 ~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~  305 (968)
T PLN00113        226 GEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEIPELVI  305 (968)
T ss_pred             CcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCCChhHc
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCCCCCEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCc
Q 036117          326 FCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPI  405 (641)
Q Consensus       326 ~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~  405 (641)
                      .+++|+.|++++|.+.+..|..+..+++|+.|++++             |.+.+.+|..++.+++|+.|++++|++++.+
T Consensus       306 ~l~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~-------------n~l~~~~p~~l~~~~~L~~L~Ls~n~l~~~~  372 (968)
T PLN00113        306 QLQNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWS-------------NKFSGEIPKNLGKHNNLTVLDLSTNNLTGEI  372 (968)
T ss_pred             CCCCCcEEECCCCccCCcCChhHhcCCCCCEEECcC-------------CCCcCcCChHHhCCCCCcEEECCCCeeEeeC
Confidence            999999999999999999999999999999998555             4555678888999999999999999999999


Q ss_pred             hhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCc
Q 036117          406 PQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPP  485 (641)
Q Consensus       406 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~  485 (641)
                      |.++..+++|+.|++++|.+.+.+|..+..+++|+.|++++|.+++.+|..+..++      .|+.|++++|.+++.+|.
T Consensus       373 p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~~~l~------~L~~L~Ls~N~l~~~~~~  446 (968)
T PLN00113        373 PEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEFTKLP------LVYFLDISNNNLQGRINS  446 (968)
T ss_pred             ChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhHhcCC------CCCEEECcCCcccCccCh
Confidence            99999999999999999999999999999999999999999999999999998888      899999999999999999


Q ss_pred             cccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCC
Q 036117          486 GICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNL  565 (641)
Q Consensus       486 ~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L  565 (641)
                      .+..+++|+.|++++|++.+.+|..+ ..++|+.|++++|++.+..|..+..+++|+.|++++|++.+.+|..+.++++|
T Consensus       447 ~~~~l~~L~~L~L~~n~~~~~~p~~~-~~~~L~~L~ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L  525 (968)
T PLN00113        447 RKWDMPSLQMLSLARNKFFGGLPDSF-GSKRLENLDLSRNQFSGAVPRKLGSLSELMQLKLSENKLSGEIPDELSSCKKL  525 (968)
T ss_pred             hhccCCCCcEEECcCceeeeecCccc-ccccceEEECcCCccCCccChhhhhhhccCEEECcCCcceeeCChHHcCccCC
Confidence            99999999999999999999888765 45899999999999999999999999999999999999999999999999999


Q ss_pred             CEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCccccCCCCCCEEeCcCCCCcccCccc
Q 036117          566 SNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIPAE  630 (641)
Q Consensus       566 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~~~L~~l~l~~n~l~~~~p~~  630 (641)
                      ++|++++|.+++.+|..++++++|+.|+|++|++++.+|..+..+++|+.+++++|+++|.+|..
T Consensus       526 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~l~ls~N~l~~~~p~~  590 (968)
T PLN00113        526 VSLDLSHNQLSGQIPASFSEMPVLSQLDLSQNQLSGEIPKNLGNVESLVQVNISHNHLHGSLPST  590 (968)
T ss_pred             CEEECCCCcccccCChhHhCcccCCEEECCCCcccccCChhHhcCcccCEEeccCCcceeeCCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999964

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=6.5e-41  Score=315.09  Aligned_cols=470  Identities=26%  Similarity=0.355  Sum_probs=295.0

Q ss_pred             ccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEeccccCCCCCCcccCCCCCCC
Q 036117          108 IGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLT  187 (641)
Q Consensus       108 l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~  187 (641)
                      +.++..|.+|++.+|.+. ..|.+++.+..++.++.++|+++ .+|..+..+.++..+++++|.+... ++.+..+..|+
T Consensus        64 l~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls-~lp~~i~s~~~l~~l~~s~n~~~el-~~~i~~~~~l~  140 (565)
T KOG0472|consen   64 LKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLS-ELPEQIGSLISLVKLDCSSNELKEL-PDSIGRLLDLE  140 (565)
T ss_pred             hhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHh-hccHHHhhhhhhhhhhccccceeec-CchHHHHhhhh
Confidence            444444444444444444 33444444444444444444443 3444444444444444444443322 23344455555


Q ss_pred             EEEcCCCCCCCCchhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCcccccCCcccCCCCCCCEEEcCCCc
Q 036117          188 DLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNK  267 (641)
Q Consensus       188 ~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~  267 (641)
                      .++..+|++.++|..++.+.++..+++.+|.+. ..++.... ++.|+++|+-.|.+. .+|..++.+.+|..|++.+|+
T Consensus       141 dl~~~~N~i~slp~~~~~~~~l~~l~~~~n~l~-~l~~~~i~-m~~L~~ld~~~N~L~-tlP~~lg~l~~L~~LyL~~Nk  217 (565)
T KOG0472|consen  141 DLDATNNQISSLPEDMVNLSKLSKLDLEGNKLK-ALPENHIA-MKRLKHLDCNSNLLE-TLPPELGGLESLELLYLRRNK  217 (565)
T ss_pred             hhhccccccccCchHHHHHHHHHHhhccccchh-hCCHHHHH-HHHHHhcccchhhhh-cCChhhcchhhhHHHHhhhcc
Confidence            555566666667777777777777777777776 55555433 677777777776665 667777777777777777777


Q ss_pred             CCccCCcccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCccCCCCCCcCCCCCCCCCEEEccCccccccCchh
Q 036117          268 LTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLS  347 (641)
Q Consensus       268 l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~  347 (641)
                      +. ..| .|..+..|+++.++.|++.........+++++..||+++|++. ..|..+..+.+|+.||+++|.++ ..|..
T Consensus       218 i~-~lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~clLrsL~rLDlSNN~is-~Lp~s  293 (565)
T KOG0472|consen  218 IR-FLP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEICLLRSLERLDLSNNDIS-SLPYS  293 (565)
T ss_pred             cc-cCC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHHHHhhhhhhhcccCCccc-cCCcc
Confidence            76 555 4777777777777777776544444557777777777777773 45666666777777777777777 56667


Q ss_pred             hhcCCCCCeEeCCcccccccceeeccccc------ccc-cCCcCCCCCC--CCCEEEccCCcCcCCchhhhhCCCCCCeE
Q 036117          348 LASLRQISELGISNNQLSEIISLQLQMND------LSG-KLPPEIGLLP--KLEYLYLFDNKFSGPIPQQIGNLTNLFDL  418 (641)
Q Consensus       348 l~~~~~L~~L~l~~n~~~~l~~l~l~~~~------l~~-~~~~~l~~~~--~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  418 (641)
                      ++++ .|+.|.+.+|+++.++.--++.-.      +.. ...+.+....  +-...+    ...+..|+ .....+.+.|
T Consensus       294 Lgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~~~e~~~t----~~~~~~~~-~~~~i~tkiL  367 (565)
T KOG0472|consen  294 LGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEGGTETAMT----LPSESFPD-IYAIITTKIL  367 (565)
T ss_pred             cccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcccccccCC----CCCCcccc-hhhhhhhhhh
Confidence            7777 777777777777644321111100      000 0000000000  000000    00111111 2234566777


Q ss_pred             ecccCcCCccCcccccCCC---CCCEEEccCCcCcccCCcchhcCCCCCCCCCcc-EEEccCCcccccCCccccCCCCCc
Q 036117          419 QLANNFFNGSIPSTIGNLS---SLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLR-NVSFSYNNFSGKLPPGICRGGNLI  494 (641)
Q Consensus       419 ~l~~n~l~~~~~~~l~~l~---~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~-~L~ls~n~l~~~~~~~~~~~~~L~  494 (641)
                      ++++-+++ .+|.....-.   -...+++++|++. ++|..+..+.      .++ .+.++.|.+ +.+|..++.++.|.
T Consensus       368 ~~s~~qlt-~VPdEVfea~~~~~Vt~VnfskNqL~-elPk~L~~lk------elvT~l~lsnn~i-sfv~~~l~~l~kLt  438 (565)
T KOG0472|consen  368 DVSDKQLT-LVPDEVFEAAKSEIVTSVNFSKNQLC-ELPKRLVELK------ELVTDLVLSNNKI-SFVPLELSQLQKLT  438 (565)
T ss_pred             cccccccc-cCCHHHHHHhhhcceEEEecccchHh-hhhhhhHHHH------HHHHHHHhhcCcc-ccchHHHHhhhcce
Confidence            77777776 4554433332   2667788888776 6666555444      333 344444444 36777788888888


Q ss_pred             eEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCc
Q 036117          495 YLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNR  574 (641)
Q Consensus       495 ~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~  574 (641)
                      .|++++|-+. .+|..+..+..|+.|+++.|+|. .+|.+...+..++.+-.++|++....|..++++..|+.||+.+|.
T Consensus       439 ~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas~nqi~~vd~~~l~nm~nL~tLDL~nNd  516 (565)
T KOG0472|consen  439 FLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLASNNQIGSVDPSGLKNMRNLTTLDLQNND  516 (565)
T ss_pred             eeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhccccccccChHHhhhhhhcceeccCCCc
Confidence            8888877665 78888888888999999999887 677777777778888888899987777779999999999999999


Q ss_pred             CcccCCccccCCCCCCEEeCCCCcCcccCCccc
Q 036117          575 IKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQL  607 (641)
Q Consensus       575 l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l  607 (641)
                      +. .+|..++++++|++|++++|+|.  .|+..
T Consensus       517 lq-~IPp~LgnmtnL~hLeL~gNpfr--~Pr~~  546 (565)
T KOG0472|consen  517 LQ-QIPPILGNMTNLRHLELDGNPFR--QPRHQ  546 (565)
T ss_pred             hh-hCChhhccccceeEEEecCCccC--CCHHH
Confidence            97 88999999999999999999997  66543

>KOG0472 consensus Leucine-rich repeat protein [Function unknown]

Probab=100.00  E-value=9.1e-41  Score=314.10  Aligned_cols=487  Identities=27%  Similarity=0.349  Sum_probs=392.4

Q ss_pred             cCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEeccccCCCCCCcccCCCCCCCE
Q 036117          109 GNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTD  188 (641)
Q Consensus       109 ~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~  188 (641)
                      ..-.-++.+.+++|.+. .+-..+.++..|.+|++.+|+++ ..|.+++.+..++.++.++|++... +..+..+.+|++
T Consensus        42 W~qv~l~~lils~N~l~-~l~~dl~nL~~l~vl~~~~n~l~-~lp~aig~l~~l~~l~vs~n~ls~l-p~~i~s~~~l~~  118 (565)
T KOG0472|consen   42 WEQVDLQKLILSHNDLE-VLREDLKNLACLTVLNVHDNKLS-QLPAAIGELEALKSLNVSHNKLSEL-PEQIGSLISLVK  118 (565)
T ss_pred             hhhcchhhhhhccCchh-hccHhhhcccceeEEEeccchhh-hCCHHHHHHHHHHHhhcccchHhhc-cHHHhhhhhhhh
Confidence            34456788999999988 55566889999999999999988 7788999999999999999998754 556788899999


Q ss_pred             EEcCCCCCCCCchhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCcccccCCcccCCCCCCCEEEcCCCcC
Q 036117          189 LWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKL  268 (641)
Q Consensus       189 L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~l  268 (641)
                      +++++|.+..+++.++.+..+..++..+|++. .+|.+. ..+.++..+++.+|.+... |...-+++.|++++...|.+
T Consensus       119 l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~-slp~~~-~~~~~l~~l~~~~n~l~~l-~~~~i~m~~L~~ld~~~N~L  195 (565)
T KOG0472|consen  119 LDCSSNELKELPDSIGRLLDLEDLDATNNQIS-SLPEDM-VNLSKLSKLDLEGNKLKAL-PENHIAMKRLKHLDCNSNLL  195 (565)
T ss_pred             hhccccceeecCchHHHHhhhhhhhccccccc-cCchHH-HHHHHHHHhhccccchhhC-CHHHHHHHHHHhcccchhhh
Confidence            99999999999999999999999999999998 677655 7888999999999999854 44444599999999999988


Q ss_pred             CccCCcccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCccCCCCCCcCCCCCCCCCEEEccCccccccCchhh
Q 036117          269 TGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSL  348 (641)
Q Consensus       269 ~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l  348 (641)
                      . .+|..++.+.+|+.|++..|++.. .| .|.++..|+++++..|.+.-........++++.+||+.+|++. ..|+.+
T Consensus       196 ~-tlP~~lg~l~~L~~LyL~~Nki~~-lP-ef~gcs~L~Elh~g~N~i~~lpae~~~~L~~l~vLDLRdNklk-e~Pde~  271 (565)
T KOG0472|consen  196 E-TLPPELGGLESLELLYLRRNKIRF-LP-EFPGCSLLKELHVGENQIEMLPAEHLKHLNSLLVLDLRDNKLK-EVPDEI  271 (565)
T ss_pred             h-cCChhhcchhhhHHHHhhhccccc-CC-CCCccHHHHHHHhcccHHHhhHHHHhcccccceeeeccccccc-cCchHH
Confidence            7 888889999999999999999984 44 8899999999999999985443344558899999999999999 889999


Q ss_pred             hcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCchhhhhC-----CCCCCeE----e
Q 036117          349 ASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGN-----LTNLFDL----Q  419 (641)
Q Consensus       349 ~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~-----l~~L~~L----~  419 (641)
                      .-+++|..||+++|.++.              +|..++++ .|+.|.+.+|.+...--+.+..     ++.|+.-    .
T Consensus       272 clLrsL~rLDlSNN~is~--------------Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dg  336 (565)
T KOG0472|consen  272 CLLRSLERLDLSNNDISS--------------LPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDG  336 (565)
T ss_pred             HHhhhhhhhcccCCcccc--------------CCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCC
Confidence            999999999988887764              46788888 8999999999876432221111     1111110    0


Q ss_pred             cccCc---CC-cc-Ccc---cccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccccCCC
Q 036117          420 LANNF---FN-GS-IPS---TIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGG  491 (641)
Q Consensus       420 l~~n~---l~-~~-~~~---~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~  491 (641)
                      ++...   -+ .. .+.   ......+.+.|++++-+++ .+|+.+......   .-...++++.|++. ++|..+..+.
T Consensus       337 lS~se~~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt-~VPdEVfea~~~---~~Vt~VnfskNqL~-elPk~L~~lk  411 (565)
T KOG0472|consen  337 LSQSEGGTETAMTLPSESFPDIYAIITTKILDVSDKQLT-LVPDEVFEAAKS---EIVTSVNFSKNQLC-ELPKRLVELK  411 (565)
T ss_pred             CCCCcccccccCCCCCCcccchhhhhhhhhhcccccccc-cCCHHHHHHhhh---cceEEEecccchHh-hhhhhhHHHH
Confidence            11110   00 01 111   1223457788999998887 778776654410   12788999999997 8898887777


Q ss_pred             CCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCc
Q 036117          492 NLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRIS  571 (641)
Q Consensus       492 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~  571 (641)
                      .+.+.-+..++..+.+|..+..+++|+.|++++|.+. .+|..++.+..|+.||+|.|+|. .+|+++..+..++.+-.+
T Consensus       412 elvT~l~lsnn~isfv~~~l~~l~kLt~L~L~NN~Ln-~LP~e~~~lv~Lq~LnlS~NrFr-~lP~~~y~lq~lEtllas  489 (565)
T KOG0472|consen  412 ELVTDLVLSNNKISFVPLELSQLQKLTFLDLSNNLLN-DLPEEMGSLVRLQTLNLSFNRFR-MLPECLYELQTLETLLAS  489 (565)
T ss_pred             HHHHHHHhhcCccccchHHHHhhhcceeeecccchhh-hcchhhhhhhhhheecccccccc-cchHHHhhHHHHHHHHhc
Confidence            7655545555555588888999999999999999887 68888899999999999999988 778888888888888888


Q ss_pred             CCcCcccCCccccCCCCCCEEeCCCCcCcccCCccccCCCCCCEEeCcCCCCcccCccc
Q 036117          572 GNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIPAE  630 (641)
Q Consensus       572 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~~~L~~l~l~~n~l~~~~p~~  630 (641)
                      +|++....|+++.++..|..|||.+|++. .||..+++|++|++|++++|+++  .|..
T Consensus       490 ~nqi~~vd~~~l~nm~nL~tLDL~nNdlq-~IPp~LgnmtnL~hLeL~gNpfr--~Pr~  545 (565)
T KOG0472|consen  490 NNQIGSVDPSGLKNMRNLTTLDLQNNDLQ-QIPPILGNMTNLRHLELDGNPFR--QPRH  545 (565)
T ss_pred             cccccccChHHhhhhhhcceeccCCCchh-hCChhhccccceeEEEecCCccC--CCHH
Confidence            89998777777999999999999999998 89999999999999999999997  5543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=2.8e-37  Score=303.37  Aligned_cols=366  Identities=23%  Similarity=0.260  Sum_probs=313.3

Q ss_pred             CCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEec
Q 036117           89 NLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIG  168 (641)
Q Consensus        89 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~  168 (641)
                      .-++||+++|++...-+..|.++++|+.+++.+|.++ .+|.......+|+.|+|.+|.|+..-.+.++.++.|+.|||+
T Consensus        79 ~t~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt-~IP~f~~~sghl~~L~L~~N~I~sv~se~L~~l~alrslDLS  157 (873)
T KOG4194|consen   79 QTQTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELT-RIPRFGHESGHLEKLDLRHNLISSVTSEELSALPALRSLDLS  157 (873)
T ss_pred             ceeeeeccccccccCcHHHHhcCCcceeeeeccchhh-hcccccccccceeEEeeeccccccccHHHHHhHhhhhhhhhh
Confidence            4567999999999888888999999999999999999 788876667789999999999998888899999999999999


Q ss_pred             cccCCCCCCcccCCCCCCCEEEcCCCCCCCCc-hhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCccccc
Q 036117          169 ANYLEDPDPVKFKGMASLTDLWLDYNLLEKFP-SFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGE  247 (641)
Q Consensus       169 ~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~-~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~  247 (641)
                      .|.++.+....|..-.++++|+|++|.|+.+. ..|..+.+|..|.|+.|.++ .+|...|.++++|+.|+|..|++.-.
T Consensus       158 rN~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrit-tLp~r~Fk~L~~L~~LdLnrN~iriv  236 (873)
T KOG4194|consen  158 RNLISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRIT-TLPQRSFKRLPKLESLDLNRNRIRIV  236 (873)
T ss_pred             hchhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCccc-ccCHHHhhhcchhhhhhccccceeee
Confidence            99999999999999999999999999998885 46888889999999999998 88989999999999999999998744


Q ss_pred             CCcccCCCCCCCEEEcCCCcCCccCCcccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCccCCCCCCcCCCCC
Q 036117          248 IPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFC  327 (641)
Q Consensus       248 ~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~  327 (641)
                      -.-.|..+++|+.|.+.+|++...-...|..+.++++|++..|++...-..++.++++|+.|++++|.|....+..+..+
T Consensus       237 e~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~NaI~rih~d~Wsft  316 (873)
T KOG4194|consen  237 EGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFT  316 (873)
T ss_pred             hhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchhhhheeecchhhhc
Confidence            35578899999999999999986666667889999999999999998888899999999999999999998888899999


Q ss_pred             CCCCEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCchh
Q 036117          328 ANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQ  407 (641)
Q Consensus       328 ~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~  407 (641)
                      ++|++|+++.|+++...+..+..+..|++|++++|.+..+..             ..|..+.+|++|||++|.+++.+.+
T Consensus       317 qkL~~LdLs~N~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e-------------~af~~lssL~~LdLr~N~ls~~IED  383 (873)
T KOG4194|consen  317 QKLKELDLSSNRITRLDEGSFRVLSQLEELNLSHNSIDHLAE-------------GAFVGLSSLHKLDLRSNELSWCIED  383 (873)
T ss_pred             ccceeEeccccccccCChhHHHHHHHhhhhcccccchHHHHh-------------hHHHHhhhhhhhcCcCCeEEEEEec
Confidence            999999999999998888899999999999999998876532             3455677888888888877765443


Q ss_pred             ---hhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccC
Q 036117          408 ---QIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSY  476 (641)
Q Consensus       408 ---~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~  476 (641)
                         .|.++++|+.|++.+|++....-..|..++.|++||+.+|.+...-|..|..+.       |++|.+..
T Consensus       384 aa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAFe~m~-------Lk~Lv~nS  448 (873)
T KOG4194|consen  384 AAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAFEPME-------LKELVMNS  448 (873)
T ss_pred             chhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeecccccccch-------hhhhhhcc
Confidence               466788888888888888754456788888888888888888766666555443       66665543

>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]

Probab=100.00  E-value=2e-36  Score=297.51  Aligned_cols=368  Identities=23%  Similarity=0.232  Sum_probs=222.7

Q ss_pred             cEEEeccccCCCCCCcccCCCCCCCEEEcCCCCCCCCchhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCC
Q 036117          163 WLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKN  242 (641)
Q Consensus       163 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n  242 (641)
                      ++|++++|++..+....|.++++|+++++..|.++.+|.......+|+.|+|.+|.+. .+....+..++.|+.|||+.|
T Consensus        81 ~~LdlsnNkl~~id~~~f~nl~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~-sv~se~L~~l~alrslDLSrN  159 (873)
T KOG4194|consen   81 QTLDLSNNKLSHIDFEFFYNLPNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLIS-SVTSEELSALPALRSLDLSRN  159 (873)
T ss_pred             eeeeccccccccCcHHHHhcCCcceeeeeccchhhhcccccccccceeEEeeeccccc-cccHHHHHhHhhhhhhhhhhc
Confidence            4466666666666666666777777777777777777776666666777777777776 555555566777777777777


Q ss_pred             cccccCCcccCCCCCCCEEEcCCCcCCccCCcccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCccCCCCCCc
Q 036117          243 SFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPK  322 (641)
Q Consensus       243 ~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  322 (641)
                      .++..-...|..-.++++|+|++|.++......|..+.+|.+|.++.|+++...+..|.++++|+.|++..|.+...--.
T Consensus       160 ~is~i~~~sfp~~~ni~~L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~l  239 (873)
T KOG4194|consen  160 LISEIPKPSFPAKVNIKKLNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGL  239 (873)
T ss_pred             hhhcccCCCCCCCCCceEEeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhh
Confidence            77644444455556677777777777655555666666666667777666665555666666666666666655332222


Q ss_pred             CCCCCCCCCEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCc
Q 036117          323 ELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFS  402 (641)
Q Consensus       323 ~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~  402 (641)
                      .|..+++|+.|.+..|.+...-...|.                                     .+.++++|+|..|++.
T Consensus       240 tFqgL~Sl~nlklqrN~I~kL~DG~Fy-------------------------------------~l~kme~l~L~~N~l~  282 (873)
T KOG4194|consen  240 TFQGLPSLQNLKLQRNDISKLDDGAFY-------------------------------------GLEKMEHLNLETNRLQ  282 (873)
T ss_pred             hhcCchhhhhhhhhhcCcccccCccee-------------------------------------eecccceeecccchhh
Confidence            344445555555555544432222333                                     3444444444444444


Q ss_pred             CCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCccccc
Q 036117          403 GPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGK  482 (641)
Q Consensus       403 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~  482 (641)
                      ..-..|+.++++|+.|++++|.|...-++.+..+++|++|+++.|.++.--+..+..+.      +|++|.++.|.++..
T Consensus       283 ~vn~g~lfgLt~L~~L~lS~NaI~rih~d~WsftqkL~~LdLs~N~i~~l~~~sf~~L~------~Le~LnLs~Nsi~~l  356 (873)
T KOG4194|consen  283 AVNEGWLFGLTSLEQLDLSYNAIQRIHIDSWSFTQKLKELDLSSNRITRLDEGSFRVLS------QLEELNLSHNSIDHL  356 (873)
T ss_pred             hhhcccccccchhhhhccchhhhheeecchhhhcccceeEeccccccccCChhHHHHHH------HhhhhcccccchHHH
Confidence            43344444555555555555555444444444455555555555555433333444444      455555555555433


Q ss_pred             CCccccCCCCCceEeccCCcccCCCc---cccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhh
Q 036117          483 LPPGICRGGNLIYLTANVNKLVGPIP---ESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNW  559 (641)
Q Consensus       483 ~~~~~~~~~~L~~L~l~~n~~~~~~~---~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~  559 (641)
                      -...+..+++|+.||+++|.++..+-   ..|..+++|++|.+.+|++.......|..++.|+.|||.+|.+..+-|++|
T Consensus       357 ~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krAfsgl~~LE~LdL~~NaiaSIq~nAF  436 (873)
T KOG4194|consen  357 AEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRAFSGLEALEHLDLGDNAIASIQPNAF  436 (873)
T ss_pred             HhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecCceeeecchhhhccCcccceecCCCCcceeeccccc
Confidence            33344555666666666666654332   346677888888888888876666778888888888888888888888888


Q ss_pred             hcCCCCCEEeCcCCcC
Q 036117          560 GKCTNLSNFRISGNRI  575 (641)
Q Consensus       560 ~~l~~L~~L~L~~n~l  575 (641)
                      ..+ .|++|.+..-.+
T Consensus       437 e~m-~Lk~Lv~nSssf  451 (873)
T KOG4194|consen  437 EPM-ELKELVMNSSSF  451 (873)
T ss_pred             ccc-hhhhhhhcccce
Confidence            877 788877765443

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=100.00  E-value=2.2e-36  Score=312.76  Aligned_cols=440  Identities=29%  Similarity=0.309  Sum_probs=225.7

Q ss_pred             CCEEEcccccCCCCCChhccCCCCCcEEEeccccCCCCCCcccCCCCCCCEEEcCCCCCCCCchhhcCCCCCcEEEeeCC
Q 036117          138 LRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDN  217 (641)
Q Consensus       138 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~  217 (641)
                      |+.|++++|.+. ..|..+..+.+|+.|+++.|.+...+ ....++.+|+++.|..|.+..+|..+..+++|++|++++|
T Consensus        47 L~~l~lsnn~~~-~fp~~it~l~~L~~ln~s~n~i~~vp-~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~LdlS~N  124 (1081)
T KOG0618|consen   47 LKSLDLSNNQIS-SFPIQITLLSHLRQLNLSRNYIRSVP-SSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDLSFN  124 (1081)
T ss_pred             eEEeeccccccc-cCCchhhhHHHHhhcccchhhHhhCc-hhhhhhhcchhheeccchhhcCchhHHhhhcccccccchh
Confidence            444444444443 33444444444444444444443332 3344445555555555555555666666666666666666


Q ss_pred             cCCCCCChhhhcCCCCCcEEeccCCcccccCCcccCCCCCCCEEEcCCCcCCccCCcccCCCCcccEeeeecccccccCc
Q 036117          218 LIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIP  297 (641)
Q Consensus       218 ~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~  297 (641)
                      .+. .+|... ..+..++.+..++|.-...    ++... ++.+++..+.+.+.++..+..+..  .|++.+|.+. .  
T Consensus       125 ~f~-~~Pl~i-~~lt~~~~~~~s~N~~~~~----lg~~~-ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~-~--  192 (1081)
T KOG0618|consen  125 HFG-PIPLVI-EVLTAEEELAASNNEKIQR----LGQTS-IKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME-V--  192 (1081)
T ss_pred             ccC-CCchhH-HhhhHHHHHhhhcchhhhh----hcccc-chhhhhhhhhcccchhcchhhhhe--eeecccchhh-h--
Confidence            554 444332 4455555555555511111    11111 555555555555555444444444  4566665554 1  


Q ss_pred             cccCCCCCCCeeeccCccCCCCCCcCCCCCCCCCEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccc
Q 036117          298 SSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDL  377 (641)
Q Consensus       298 ~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l  377 (641)
                      ..+..+.+|+.+....|++.....    .-++++.|+.+.|.++...+.  ....+|+++++++|+++.           
T Consensus       193 ~dls~~~~l~~l~c~rn~ls~l~~----~g~~l~~L~a~~n~l~~~~~~--p~p~nl~~~dis~n~l~~-----------  255 (1081)
T KOG0618|consen  193 LDLSNLANLEVLHCERNQLSELEI----SGPSLTALYADHNPLTTLDVH--PVPLNLQYLDISHNNLSN-----------  255 (1081)
T ss_pred             hhhhhccchhhhhhhhcccceEEe----cCcchheeeeccCcceeeccc--cccccceeeecchhhhhc-----------
Confidence            234445555555555555433211    124566666666665532221  122345555544444432           


Q ss_pred             cccCCcCCCCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcch
Q 036117          378 SGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEI  457 (641)
Q Consensus       378 ~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~  457 (641)
                         +|++++.+++|+.++..+|+++ .+|..+...++|+.+.+..|++. .+|.....+++|++|++..|++. .+|+.+
T Consensus       256 ---lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~~~L~~l~~~~nel~-yip~~le~~~sL~tLdL~~N~L~-~lp~~~  329 (1081)
T KOG0618|consen  256 ---LPEWIGACANLEALNANHNRLV-ALPLRISRITSLVSLSAAYNELE-YIPPFLEGLKSLRTLDLQSNNLP-SLPDNF  329 (1081)
T ss_pred             ---chHHHHhcccceEecccchhHH-hhHHHHhhhhhHHHHHhhhhhhh-hCCCcccccceeeeeeehhcccc-ccchHH
Confidence               2455666666666666666664 55555555666666666666666 55555666666666666666664 444322


Q ss_pred             hcCCCCCCCCCccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCC
Q 036117          458 GNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGI  537 (641)
Q Consensus       458 ~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~  537 (641)
                      ....    +.++..+..+.|++.......-.....|+.|.+.+|.+....-+.+.+.++|+.|+|++|++.......+.+
T Consensus       330 l~v~----~~~l~~ln~s~n~l~~lp~~~e~~~~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~k  405 (1081)
T KOG0618|consen  330 LAVL----NASLNTLNVSSNKLSTLPSYEENNHAALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRK  405 (1081)
T ss_pred             Hhhh----hHHHHHHhhhhccccccccccchhhHHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhc
Confidence            1111    012444555555543211111122344555666666665555455555666666666666665444445555


Q ss_pred             CCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCccc-CCccccCCCCCCEE
Q 036117          538 YPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGK-IPAQLFRSSFLIRL  616 (641)
Q Consensus       538 l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~-ip~~l~~~~~L~~l  616 (641)
                      ++.|+.|++|+|.++ .+|.++..++.|++|...+|.+. ..| .+..+++|+.+|++.|+++.. +|.... .+.|++|
T Consensus       406 le~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~ahsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p-~p~LkyL  481 (1081)
T KOG0618|consen  406 LEELEELNLSGNKLT-TLPDTVANLGRLHTLRAHSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALP-SPNLKYL  481 (1081)
T ss_pred             hHHhHHHhcccchhh-hhhHHHHhhhhhHHHhhcCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCC-Cccccee
Confidence            666666666666655 44555666666666666666665 455 455666666666666666432 222222 2556666


Q ss_pred             eCcCCC
Q 036117          617 NLRRNQ  622 (641)
Q Consensus       617 ~l~~n~  622 (641)
                      |+++|.
T Consensus       482 dlSGN~  487 (1081)
T KOG0618|consen  482 DLSGNT  487 (1081)
T ss_pred             eccCCc
Confidence            666664

>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]

Probab=99.98  E-value=3.6e-35  Score=303.83  Aligned_cols=477  Identities=27%  Similarity=0.365  Sum_probs=332.6

Q ss_pred             EECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEeccccCCCCCCcccCCCCCCCEEEcCCCCC
Q 036117          117 LDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLL  196 (641)
Q Consensus       117 L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~  196 (641)
                      +|.+.+.+. .+|..+-.-..++.|++.+|.+-...-+...+.-+|+.|++++|.+... +..+..+.+|+.|+++.|.+
T Consensus         3 vd~s~~~l~-~ip~~i~~~~~~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~~f-p~~it~l~~L~~ln~s~n~i   80 (1081)
T KOG0618|consen    3 VDASDEQLE-LIPEQILNNEALQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQISSF-PIQITLLSHLRQLNLSRNYI   80 (1081)
T ss_pred             cccccccCc-ccchhhccHHHHHhhhccccccccCchHHhhheeeeEEeeccccccccC-CchhhhHHHHhhcccchhhH
Confidence            556666666 5665554444477777777765432223334444567777776665533 34455566666666666666


Q ss_pred             CCCchhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCcccccCCcccCCCCCCCEEEcCCCcCCccCCccc
Q 036117          197 EKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEI  276 (641)
Q Consensus       197 ~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l  276 (641)
                      ..+|....++.+|+++.|.+|.+. ..|..+ ..+.+|++|+++.|.+. .+|..+..+..+..+..++|.-...    +
T Consensus        81 ~~vp~s~~~~~~l~~lnL~~n~l~-~lP~~~-~~lknl~~LdlS~N~f~-~~Pl~i~~lt~~~~~~~s~N~~~~~----l  153 (1081)
T KOG0618|consen   81 RSVPSSCSNMRNLQYLNLKNNRLQ-SLPASI-SELKNLQYLDLSFNHFG-PIPLVIEVLTAEEELAASNNEKIQR----L  153 (1081)
T ss_pred             hhCchhhhhhhcchhheeccchhh-cCchhH-HhhhcccccccchhccC-CCchhHHhhhHHHHHhhhcchhhhh----h
Confidence            666666666666666666666654 444433 56666666666666665 5566666666666666666521111    1


Q ss_pred             CCCCcccEeeeecccccccCccccCCCCCCCeeeccCccCCCCCCcCCCCCCCCCEEEccCccccccCchhhhcCCCCCe
Q 036117          277 GLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISE  356 (641)
Q Consensus       277 ~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~  356 (641)
                      +.. .++.+++..|.+.+.++..+..+..  .+++++|.+.   ...+..+++|+.+....|++....    ..-++++.
T Consensus       154 g~~-~ik~~~l~~n~l~~~~~~~i~~l~~--~ldLr~N~~~---~~dls~~~~l~~l~c~rn~ls~l~----~~g~~l~~  223 (1081)
T KOG0618|consen  154 GQT-SIKKLDLRLNVLGGSFLIDIYNLTH--QLDLRYNEME---VLDLSNLANLEVLHCERNQLSELE----ISGPSLTA  223 (1081)
T ss_pred             ccc-cchhhhhhhhhcccchhcchhhhhe--eeecccchhh---hhhhhhccchhhhhhhhcccceEE----ecCcchhe
Confidence            211 1566666666666665555555544  5666666654   123455566666666666555211    12345556


Q ss_pred             EeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCC
Q 036117          357 LGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNL  436 (641)
Q Consensus       357 L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l  436 (641)
                      |+.+.|.+..+             .  .-....+|++++++.|+++ .+|+|++.+.+|+.++..+|.++ .+|..+...
T Consensus       224 L~a~~n~l~~~-------------~--~~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~-~lp~ri~~~  286 (1081)
T KOG0618|consen  224 LYADHNPLTTL-------------D--VHPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLV-ALPLRISRI  286 (1081)
T ss_pred             eeeccCcceee-------------c--cccccccceeeecchhhhh-cchHHHHhcccceEecccchhHH-hhHHHHhhh
Confidence            66555554421             1  1223468999999999998 56699999999999999999996 788888889


Q ss_pred             CCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccccC-CC-CCceEeccCCcccCCCccccccC
Q 036117          437 SSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICR-GG-NLIYLTANVNKLVGPIPESLWNC  514 (641)
Q Consensus       437 ~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~-~~-~L~~L~l~~n~~~~~~~~~l~~~  514 (641)
                      .+|+.+.+..|.+. .+|+......      .|++|++..|++. ..|+.+.. .. .+..+..+.|++.......=...
T Consensus       287 ~~L~~l~~~~nel~-yip~~le~~~------sL~tLdL~~N~L~-~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e~~~  358 (1081)
T KOG0618|consen  287 TSLVSLSAAYNELE-YIPPFLEGLK------SLRTLDLQSNNLP-SLPDNFLAVLNASLNTLNVSSNKLSTLPSYEENNH  358 (1081)
T ss_pred             hhHHHHHhhhhhhh-hCCCcccccc------eeeeeeehhcccc-ccchHHHhhhhHHHHHHhhhhccccccccccchhh
Confidence            99999999999987 6777777677      8999999999986 56654333 22 36777778777763221111235


Q ss_pred             CCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeC
Q 036117          515 TGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDI  594 (641)
Q Consensus       515 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  594 (641)
                      +.|+.|++.+|.++......+.++++|+.|+|++|++.......+.+++.|++|+||+|+++ .+|..+.++..|++|..
T Consensus       359 ~~Lq~LylanN~Ltd~c~p~l~~~~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~-~Lp~tva~~~~L~tL~a  437 (1081)
T KOG0618|consen  359 AALQELYLANNHLTDSCFPVLVNFKHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLT-TLPDTVANLGRLHTLRA  437 (1081)
T ss_pred             HHHHHHHHhcCcccccchhhhccccceeeeeecccccccCCHHHHhchHHhHHHhcccchhh-hhhHHHHhhhhhHHHhh
Confidence            67999999999999888888999999999999999999777778899999999999999998 88899999999999999


Q ss_pred             CCCcCcccCCccccCCCCCCEEeCcCCCCc-ccCcccccCCCCCcCCC
Q 036117          595 FDNQLTGKIPAQLFRSSFLIRLNLRRNQLS-DKIPAEIGKLSRLQYLD  641 (641)
Q Consensus       595 ~~n~l~~~ip~~l~~~~~L~~l~l~~n~l~-~~~p~~~~~l~~L~~l~  641 (641)
                      .+|++. ..| .+..++.|+.+|+++|+++ +.+|..... +.|++||
T Consensus       438 hsN~l~-~fP-e~~~l~qL~~lDlS~N~L~~~~l~~~~p~-p~LkyLd  482 (1081)
T KOG0618|consen  438 HSNQLL-SFP-ELAQLPQLKVLDLSCNNLSEVTLPEALPS-PNLKYLD  482 (1081)
T ss_pred             cCCcee-ech-hhhhcCcceEEecccchhhhhhhhhhCCC-cccceee
Confidence            999998 788 8899999999999999997 456655443 6788776

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=4.2e-33  Score=276.00  Aligned_cols=368  Identities=27%  Similarity=0.365  Sum_probs=255.8

Q ss_pred             CcEEEeccccCC-CCCCcccCCCCCCCEEEcCCCCCCCCchhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEecc
Q 036117          162 AWLLRIGANYLE-DPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLT  240 (641)
Q Consensus       162 L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~  240 (641)
                      .+-+++++|.++ +..|.....+++++.|.+...++..+|..++.+.+|++|.+..|++. .+. +.++.++.|+.+.++
T Consensus         9 VrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~-~vh-GELs~Lp~LRsv~~R   86 (1255)
T KOG0444|consen    9 VRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLI-SVH-GELSDLPRLRSVIVR   86 (1255)
T ss_pred             eecccccCCcCCCCcCchhHHHhhheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhH-hhh-hhhccchhhHHHhhh
Confidence            344455555555 33455566666667777777777777777777777777777777765 222 223667777777777


Q ss_pred             CCccc-ccCCcccCCCCCCCEEEcCCCcCCccCCcccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCccCCCC
Q 036117          241 KNSFE-GEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSS  319 (641)
Q Consensus       241 ~n~~~-~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  319 (641)
                      .|++. +.+|..+..+..|+.|+|++|++. ..|..+...+++-.|++++|++.......+.++..|-.|++++|++ +.
T Consensus        87 ~N~LKnsGiP~diF~l~dLt~lDLShNqL~-EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrL-e~  164 (1255)
T KOG0444|consen   87 DNNLKNSGIPTDIFRLKDLTILDLSHNQLR-EVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRL-EM  164 (1255)
T ss_pred             ccccccCCCCchhcccccceeeecchhhhh-hcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchh-hh
Confidence            77654 245666777777777777777777 6666677777777777777777755444556667777777777776 34


Q ss_pred             CCcCCCCCCCCCEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCC
Q 036117          320 IPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDN  399 (641)
Q Consensus       320 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n  399 (641)
                      +|.....+..|++|++++|.+.-.--..+.++.+|+.|.+++.+-+.            .-+|..+..+.+|..+|++.|
T Consensus       165 LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl------------~N~Ptsld~l~NL~dvDlS~N  232 (1255)
T KOG0444|consen  165 LPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTL------------DNIPTSLDDLHNLRDVDLSEN  232 (1255)
T ss_pred             cCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchh------------hcCCCchhhhhhhhhcccccc
Confidence            45556667777777777776653323334455566666655544221            135667777788888888888


Q ss_pred             cCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcc
Q 036117          400 KFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNF  479 (641)
Q Consensus       400 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l  479 (641)
                      .+. .+|+++..+++|+.|+|++|+++ .+....+...+|++|++|.|+++ .+|+.++.++      +|+.|...+|++
T Consensus       233 ~Lp-~vPecly~l~~LrrLNLS~N~it-eL~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~------kL~kLy~n~NkL  303 (1255)
T KOG0444|consen  233 NLP-IVPECLYKLRNLRRLNLSGNKIT-ELNMTEGEWENLETLNLSRNQLT-VLPDAVCKLT------KLTKLYANNNKL  303 (1255)
T ss_pred             CCC-cchHHHhhhhhhheeccCcCcee-eeeccHHHHhhhhhhccccchhc-cchHHHhhhH------HHHHHHhccCcc
Confidence            876 77888888888888888888887 45555666678888888888887 7788888777      788888888877


Q ss_pred             ccc-CCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCC
Q 036117          480 SGK-LPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLT  556 (641)
Q Consensus       480 ~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~  556 (641)
                      +-. +|..++.+..|+.+..++|++. .+|+.+..|.+|+.|.+++|++. .+|..+..++.|+.||+..|+-..-.|
T Consensus       304 ~FeGiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpnLVMPP  379 (1255)
T KOG0444|consen  304 TFEGIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPNLVMPP  379 (1255)
T ss_pred             cccCCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcCccCCC
Confidence            643 7777888888888887777765 77777888888888888888776 577777778888888888876443333

>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]

Probab=99.97  E-value=6.3e-33  Score=274.76  Aligned_cols=365  Identities=28%  Similarity=0.414  Sum_probs=233.9

Q ss_pred             CCEEEEEcCCCCCccccCCcCCCCCCCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEE
Q 036117           63 GSISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLL  142 (641)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  142 (641)
                      +-|+.+|+++|.++|.-...+..+|+.++.|.|...++. .+|+.++.+.+|++|.+++|++. .+-..++.++.||.+.
T Consensus         7 pFVrGvDfsgNDFsg~~FP~~v~qMt~~~WLkLnrt~L~-~vPeEL~~lqkLEHLs~~HN~L~-~vhGELs~Lp~LRsv~   84 (1255)
T KOG0444|consen    7 PFVRGVDFSGNDFSGDRFPHDVEQMTQMTWLKLNRTKLE-QVPEELSRLQKLEHLSMAHNQLI-SVHGELSDLPRLRSVI   84 (1255)
T ss_pred             ceeecccccCCcCCCCcCchhHHHhhheeEEEechhhhh-hChHHHHHHhhhhhhhhhhhhhH-hhhhhhccchhhHHHh
Confidence            456777777777774332266777777777777777766 66777777777777777777766 3344566777777777


Q ss_pred             cccccCC-CCCChhccCCCCCcEEEeccccCCCCCCcccCCCCCCCEEEcCCCCCCCCch-hhcCCCCCcEEEeeCCcCC
Q 036117          143 LYNNSLT-GQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPS-FIAECSKLMFLDLSDNLIM  220 (641)
Q Consensus       143 l~~n~~~-~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~-~l~~~~~L~~L~l~~~~~~  220 (641)
                      +..|++. ..+|..+..+..|.+|++++|++... |..+...+++-+|++++|+|+++|. .+.+++.|-.||+++|.+.
T Consensus        85 ~R~N~LKnsGiP~diF~l~dLt~lDLShNqL~Ev-P~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe  163 (1255)
T KOG0444|consen   85 VRDNNLKNSGIPTDIFRLKDLTILDLSHNQLREV-PTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE  163 (1255)
T ss_pred             hhccccccCCCCchhcccccceeeecchhhhhhc-chhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh
Confidence            7777665 34666677777777777777776543 3345555666677777777766665 3445666666777776665


Q ss_pred             CCCChhhhcCCCCCcEEeccCCcccccCCcccCCCCCCCEEEcCCCcCC-ccCCcccCCCCcccEeeeecccccccCccc
Q 036117          221 GHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLT-GTIPDEIGLLSNLEILEFHENLFHGLIPSS  299 (641)
Q Consensus       221 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~-~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~  299 (641)
                       .+|+.. .++.+|+.|++++|.+.-.-...+..++.|+.|.+++.+-+ ..+|..+..+.+|..++++.|.+. ..|..
T Consensus       164 -~LPPQ~-RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRTl~N~Ptsld~l~NL~dvDlS~N~Lp-~vPec  240 (1255)
T KOG0444|consen  164 -MLPPQI-RRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRTLDNIPTSLDDLHNLRDVDLSENNLP-IVPEC  240 (1255)
T ss_pred             -hcCHHH-HHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccchhhcCCCchhhhhhhhhccccccCCC-cchHH
Confidence             555544 66666777777766654333333445556666666655432 245556666666777777766665 45666


Q ss_pred             cCCCCCCCeeeccCccCCCCCCcCCCCCCCCCEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccc
Q 036117          300 LGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSG  379 (641)
Q Consensus       300 l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~  379 (641)
                      +.++++|+.|++++|.++.. ....+...+|++|+++.|+++ .+|+.+.+++.|+.|...+|++..            .
T Consensus       241 ly~l~~LrrLNLS~N~iteL-~~~~~~W~~lEtLNlSrNQLt-~LP~avcKL~kL~kLy~n~NkL~F------------e  306 (1255)
T KOG0444|consen  241 LYKLRNLRRLNLSGNKITEL-NMTEGEWENLETLNLSRNQLT-VLPDAVCKLTKLTKLYANNNKLTF------------E  306 (1255)
T ss_pred             HhhhhhhheeccCcCceeee-eccHHHHhhhhhhccccchhc-cchHHHhhhHHHHHHHhccCcccc------------c
Confidence            66667777777777666432 222344456667777777766 666666666666666655555431            1


Q ss_pred             cCCcCCCCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcC
Q 036117          380 KLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQL  449 (641)
Q Consensus       380 ~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l  449 (641)
                      .+|..++.+.+|+.+..++|.+. .+|+.++.|..|+.|.|+.|.+. .+|+.+.-++.|+.||+..|+-
T Consensus       307 GiPSGIGKL~~Levf~aanN~LE-lVPEglcRC~kL~kL~L~~NrLi-TLPeaIHlL~~l~vLDlreNpn  374 (1255)
T KOG0444|consen  307 GIPSGIGKLIQLEVFHAANNKLE-LVPEGLCRCVKLQKLKLDHNRLI-TLPEAIHLLPDLKVLDLRENPN  374 (1255)
T ss_pred             CCccchhhhhhhHHHHhhccccc-cCchhhhhhHHHHHhccccccee-echhhhhhcCCcceeeccCCcC
Confidence            35666666677777777666665 66666777777777777777665 5666666667777777766653

>PLN03210 Resistant to P

Probab=99.92  E-value=7.7e-23  Score=237.23  Aligned_cols=347  Identities=23%  Similarity=0.284  Sum_probs=225.4

Q ss_pred             hhccCCCCCcEEEeccccCC------CCCCcccCCCC-CCCEEEcCCCCCCCCchhhcCCCCCcEEEeeCCcCCCCCChh
Q 036117          154 HQLSNLQNAWLLRIGANYLE------DPDPVKFKGMA-SLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIE  226 (641)
Q Consensus       154 ~~l~~l~~L~~L~l~~n~~~------~~~~~~l~~l~-~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~  226 (641)
                      .+|.++++|+.|.+..+...      ...+..|..++ +|+.|++.++.+..+|..+ ...+|++|++.++.+. .++..
T Consensus       552 ~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~~f-~~~~L~~L~L~~s~l~-~L~~~  629 (1153)
T PLN03210        552 NAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPSNF-RPENLVKLQMQGSKLE-KLWDG  629 (1153)
T ss_pred             HHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCCcC-CccCCcEEECcCcccc-ccccc
Confidence            34555666666665443211      11233344443 4677777776666666655 4566777777776665 34433


Q ss_pred             hhcCCCCCcEEeccCCcccccCCcccCCCCCCCEEEcCCCcCCccCCcccCCCCcccEeeeecccccccCccccCCCCCC
Q 036117          227 QLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRL  306 (641)
Q Consensus       227 ~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L  306 (641)
                      . ..+++|+.|+++++.....+| .+..+++|+.|++++|.....+|..+..+++|+.|++++|...+.+|..+ ++++|
T Consensus       630 ~-~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL  706 (1153)
T PLN03210        630 V-HSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NLKSL  706 (1153)
T ss_pred             c-ccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CCCCC
Confidence            2 566677777776655433444 35666777777777766555666666777777777777765555555444 56777


Q ss_pred             CeeeccCccCCCCCCcCCCCCCCCCEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCC
Q 036117          307 QRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIG  386 (641)
Q Consensus       307 ~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~  386 (641)
                      +.|++++|.....+|..   ..+|++|++++|.+. .+|..+ .+++|+.|.+.++....+.      +.+....+....
T Consensus       707 ~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~~~~~~~l~------~~~~~l~~~~~~  775 (1153)
T PLN03210        707 YRLNLSGCSRLKSFPDI---STNISWLDLDETAIE-EFPSNL-RLENLDELILCEMKSEKLW------ERVQPLTPLMTM  775 (1153)
T ss_pred             CEEeCCCCCCccccccc---cCCcCeeecCCCccc-cccccc-cccccccccccccchhhcc------ccccccchhhhh
Confidence            77777777554444432   356777788777765 455443 4566777776654322110      001111111223


Q ss_pred             CCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCC
Q 036117          387 LLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGP  466 (641)
Q Consensus       387 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~  466 (641)
                      .+++|+.|++++|...+.+|..++++++|+.|++++|...+.+|... .+++|++|++++|.....+|...         
T Consensus       776 ~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls~c~~L~~~p~~~---------  845 (1153)
T PLN03210        776 LSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLSGCSRLRTFPDIS---------  845 (1153)
T ss_pred             ccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECCCCCccccccccc---------
Confidence            35788899999887777788888889999999998886555677655 68889999999886655555421         


Q ss_pred             CCccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcC
Q 036117          467 RFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRL  527 (641)
Q Consensus       467 ~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l  527 (641)
                      .+|++|++++|.++ .+|.++..+++|+.|++++|+-...+|..+.++++|+.+++++|.-
T Consensus       846 ~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~~  905 (1153)
T PLN03210        846 TNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCGA  905 (1153)
T ss_pred             cccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCcc
Confidence            26888999998887 6788888888999999988777667787778888888888888853

syringae 6; Provisional

>PLN03210 Resistant to P

Probab=99.92  E-value=1.2e-22  Score=235.68  Aligned_cols=340  Identities=22%  Similarity=0.231  Sum_probs=253.6

Q ss_pred             CCcccCCCCCCCEEEcCCCCC-------CCCchhhcCC-CCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCccccc
Q 036117          176 DPVKFKGMASLTDLWLDYNLL-------EKFPSFIAEC-SKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGE  247 (641)
Q Consensus       176 ~~~~l~~l~~L~~L~l~~~~~-------~~l~~~l~~~-~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~  247 (641)
                      ...+|.++++|+.|.+..+..       ..+|..+..+ .+|+.|++.++.+. .+|..+  ...+|++|+++++.+. .
T Consensus       550 ~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~-~lP~~f--~~~~L~~L~L~~s~l~-~  625 (1153)
T PLN03210        550 HENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLR-CMPSNF--RPENLVKLQMQGSKLE-K  625 (1153)
T ss_pred             cHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCC-CCCCcC--CccCCcEEECcCcccc-c
Confidence            445688899999998866532       2456666665 46999999988876 666543  4688999999998887 5


Q ss_pred             CCcccCCCCCCCEEEcCCCcCCccCCcccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCccCCCCCCcCCCCC
Q 036117          248 IPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFC  327 (641)
Q Consensus       248 ~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~  327 (641)
                      ++..+..+++|+.|+++++.....+|. +..+++|++|++++|.....+|..+..+++|+.|++++|...+.+|..+ .+
T Consensus       626 L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~~L~L~~c~~L~~Lp~~i-~l  703 (1153)
T PLN03210        626 LWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPSSIQYLNKLEDLDMSRCENLEILPTGI-NL  703 (1153)
T ss_pred             cccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccchhhhccCCCCEEeCCCCCCcCccCCcC-CC
Confidence            677788889999999988765556664 7788999999999988777788888889999999999886656666654 67


Q ss_pred             CCCCEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCc-----
Q 036117          328 ANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFS-----  402 (641)
Q Consensus       328 ~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~-----  402 (641)
                      ++|+.|++++|...+.+|..   ..+|++|++++|.+..              +|..+ .+++|++|.+.++...     
T Consensus       704 ~sL~~L~Lsgc~~L~~~p~~---~~nL~~L~L~~n~i~~--------------lP~~~-~l~~L~~L~l~~~~~~~l~~~  765 (1153)
T PLN03210        704 KSLYRLNLSGCSRLKSFPDI---STNISWLDLDETAIEE--------------FPSNL-RLENLDELILCEMKSEKLWER  765 (1153)
T ss_pred             CCCCEEeCCCCCCccccccc---cCCcCeeecCCCcccc--------------ccccc-cccccccccccccchhhcccc
Confidence            88999999988766566642   3567777777766543              33333 4677888888764321     


Q ss_pred             --CCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCccc
Q 036117          403 --GPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFS  480 (641)
Q Consensus       403 --~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~  480 (641)
                        ...+..+..+++|+.|++++|...+.+|..+.++++|+.|++++|...+.+|..+ .+.      +|++|++++|...
T Consensus       766 ~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~------sL~~L~Ls~c~~L  838 (1153)
T PLN03210        766 VQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLE------SLESLDLSGCSRL  838 (1153)
T ss_pred             ccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-Ccc------ccCEEECCCCCcc
Confidence              1122223345788999999988777888888899999999999887666777654 344      7899999988655


Q ss_pred             ccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCc
Q 036117          481 GKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQ  550 (641)
Q Consensus       481 ~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  550 (641)
                      ..+|..   .++++.|++++|.+. .+|.++..+++|+.|++++|+-...+|..+..++.|+.+++++|.
T Consensus       839 ~~~p~~---~~nL~~L~Ls~n~i~-~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~  904 (1153)
T PLN03210        839 RTFPDI---STNISDLNLSRTGIE-EVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG  904 (1153)
T ss_pred             cccccc---ccccCEeECCCCCCc-cChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence            555542   357888889888887 678888888889999998876555677777788888888888885

syringae 6; Provisional

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.88  E-value=2e-24  Score=204.01  Aligned_cols=408  Identities=22%  Similarity=0.223  Sum_probs=222.8

Q ss_pred             CCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEecc-ccCCCCCCcccCCCCCCCEEEc
Q 036117          113 KLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGA-NYLEDPDPVKFKGMASLTDLWL  191 (641)
Q Consensus       113 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L~l  191 (641)
                      .-..++|..|.|+...|.+|+.+++||.|||++|.|+.+.|++|++++.|.+|-+.+ |+|+++....|.++..|+.|.+
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            456788888888876677788888888888888888888888888888877776655 7888888888888888888888


Q ss_pred             CCCCCCCCc-hhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCcccccCCcccCCCCCCCEEEcCCCcCCc
Q 036117          192 DYNLLEKFP-SFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTG  270 (641)
Q Consensus       192 ~~~~~~~l~-~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~  270 (641)
                      .-|.+..++ ..+..++++..|.+.+|.+. .+....|..+..++.+.+..|.+..     ..+++.+....       .
T Consensus       148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q-~i~~~tf~~l~~i~tlhlA~np~ic-----dCnL~wla~~~-------a  214 (498)
T KOG4237|consen  148 NANHINCIRQDALRDLPSLSLLSLYDNKIQ-SICKGTFQGLAAIKTLHLAQNPFIC-----DCNLPWLADDL-------A  214 (498)
T ss_pred             ChhhhcchhHHHHHHhhhcchhcccchhhh-hhccccccchhccchHhhhcCcccc-----ccccchhhhHH-------h
Confidence            888776554 46777777777777777766 5555555666677777776665321     11222211110       0


Q ss_pred             cCCcccCCCCcccEeeeecccccccCccccCCC-CCCCeeeccCccCCCCCC-cCCCCCCCCCEEEccCccccccCchhh
Q 036117          271 TIPDEIGLLSNLEILEFHENLFHGLIPSSLGNL-RRLQRLNLKSAGLNSSIP-KELGFCANLTFLELSINNLTGSLPLSL  348 (641)
Q Consensus       271 ~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~l  348 (641)
                      ..|..++...-..-..+.+.++....+..+... ..+..--.+.+......| ..|..+++|+.|++++|++++.-+.+|
T Consensus       215 ~~~ietsgarc~~p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aF  294 (498)
T KOG4237|consen  215 MNPIETSGARCVSPYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAF  294 (498)
T ss_pred             hchhhcccceecchHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhh
Confidence            111112222222222333333332222222111 011100011111112211 235566666666666666666666666


Q ss_pred             hcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCcc
Q 036117          349 ASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGS  428 (641)
Q Consensus       349 ~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  428 (641)
                      .....+++|.+..|++..+..             ..|.++..|+.|+|.+|+|+...|.+|..+.+|.+|.+-.|.+...
T Consensus       295 e~~a~l~eL~L~~N~l~~v~~-------------~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~Cn  361 (498)
T KOG4237|consen  295 EGAAELQELYLTRNKLEFVSS-------------GMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFNCN  361 (498)
T ss_pred             cchhhhhhhhcCcchHHHHHH-------------HhhhccccceeeeecCCeeEEEecccccccceeeeeehccCcccCc
Confidence            666666666666655544321             2344455566666666666655566666666666666655544310


Q ss_pred             -----Ccccc-----------cCCCCCCEEEccCCcCcc---cCCcchhcCCCCCCCCCccEEEccCCcccccCCccccC
Q 036117          429 -----IPSTI-----------GNLSSLVKLSLSSNQLTG---TLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICR  489 (641)
Q Consensus       429 -----~~~~l-----------~~l~~L~~L~ls~n~l~~---~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~  489 (641)
                           +.+++           ++...++.+.+++..+.+   ..|+..+-..                     -+..-..
T Consensus       362 C~l~wl~~Wlr~~~~~~~~~Cq~p~~~~~~~~~dv~~~~~~c~~~ee~~~~~---------------------s~~cP~~  420 (498)
T KOG4237|consen  362 CRLAWLGEWLRKKSVVGNPRCQSPGFVRQIPISDVAFGDFRCGGPEELGCLT---------------------SSPCPPP  420 (498)
T ss_pred             cchHHHHHHHhhCCCCCCCCCCCCchhccccchhccccccccCCccccCCCC---------------------CCCCCCC
Confidence                 00110           011133334443332221   0111111000                     1111223


Q ss_pred             CCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEe
Q 036117          490 GGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFR  569 (641)
Q Consensus       490 ~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~  569 (641)
                      ++.+.+..=-.|+....+|..+.  ...+++++.+|.++ .+|..  .+.+| .+|+++|+++..-...|.++++|.+|.
T Consensus       421 c~c~~tVvRcSnk~lk~lp~~iP--~d~telyl~gn~~~-~vp~~--~~~~l-~~dls~n~i~~Lsn~tf~n~tql~tli  494 (498)
T KOG4237|consen  421 CTCLDTVVRCSNKLLKLLPRGIP--VDVTELYLDGNAIT-SVPDE--LLRSL-LLDLSNNRISSLSNYTFSNMTQLSTLI  494 (498)
T ss_pred             cchhhhhHhhcccchhhcCCCCC--chhHHHhcccchhc-ccCHH--HHhhh-hcccccCceehhhcccccchhhhheeE
Confidence            44444332222333334443221  33567788888887 34443  55667 888888888766667788888888888


Q ss_pred             CcCC
Q 036117          570 ISGN  573 (641)
Q Consensus       570 L~~n  573 (641)
                      |++|
T Consensus       495 lsyn  498 (498)
T KOG4237|consen  495 LSYN  498 (498)
T ss_pred             EecC
Confidence            8765

>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]

Probab=99.87  E-value=3.4e-24  Score=202.45  Aligned_cols=277  Identities=20%  Similarity=0.184  Sum_probs=167.8

Q ss_pred             CCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEccc-ccCCCCCChhccCCCCCcEEEe
Q 036117           89 NLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYN-NSLTGQIPHQLSNLQNAWLLRI  167 (641)
Q Consensus        89 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~-n~~~~~~~~~l~~l~~L~~L~l  167 (641)
                      .-.+++|..|+|+...+.+|+.+++||.|||++|.|+.+-|.+|.++++|..|-+.+ |+|+..-...|.++..|+.|.+
T Consensus        68 ~tveirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLll  147 (498)
T KOG4237|consen   68 ETVEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLL  147 (498)
T ss_pred             cceEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhc
Confidence            344556666666655555666666666666666666655666666666655554444 5565444455666666666666


Q ss_pred             ccccCCCCCCcccCCCCCCCEEEcCCCCCCCCch-hhcCCCCCcEEEeeCCcCCCCCC-----------hhhhcCCCCCc
Q 036117          168 GANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPS-FIAECSKLMFLDLSDNLIMGHIP-----------IEQLTHLENLE  235 (641)
Q Consensus       168 ~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~-~l~~~~~L~~L~l~~~~~~~~~~-----------~~~l~~l~~L~  235 (641)
                      .-|++.-+..+.|..+++|..|.+.+|.+..++. .+..+..++.+.+..|.+...-.           ...++......
T Consensus       148 Nan~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~  227 (498)
T KOG4237|consen  148 NANHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVS  227 (498)
T ss_pred             ChhhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecc
Confidence            6666666666666666666666666666655554 45555556655555544211100           00112222222


Q ss_pred             EEeccCCcccccCCcccCCC-CCCCEEEcCCCcCCccCC-cccCCCCcccEeeeecccccccCccccCCCCCCCeeeccC
Q 036117          236 YLNLTKNSFEGEIPREIKTF-PKLRHLKLGQNKLTGTIP-DEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKS  313 (641)
Q Consensus       236 ~L~l~~n~~~~~~~~~l~~l-~~L~~L~L~~~~l~~~~~-~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~  313 (641)
                      -..+.+.++....+..+... ..+.+=-.+.+...+..| ..|..+++|++|++++|++++.-+.+|.+..++++|.+..
T Consensus       228 p~rl~~~Ri~q~~a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~aFe~~a~l~eL~L~~  307 (498)
T KOG4237|consen  228 PYRLYYKRINQEDARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGAFEGAAELQELYLTR  307 (498)
T ss_pred             hHHHHHHHhcccchhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhhhcchhhhhhhhcCc
Confidence            33333333332222222211 111111112222333333 3477888899999999999888888888889999999999


Q ss_pred             ccCCCCCCcCCCCCCCCCEEEccCccccccCchhhhcCCCCCeEeCCccccc
Q 036117          314 AGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLS  365 (641)
Q Consensus       314 ~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~  365 (641)
                      |++...-...|..+..|+.|++++|+++...|.+|.....|.+|++-.|++-
T Consensus       308 N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np~~  359 (498)
T KOG4237|consen  308 NKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNPFN  359 (498)
T ss_pred             chHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCccc
Confidence            8887666667888889999999999999888888888888888888877754

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.85  E-value=1.1e-20  Score=203.25  Aligned_cols=264  Identities=28%  Similarity=0.382  Sum_probs=136.5

Q ss_pred             cccEeeeecccccccCccccCCCCCCCeeeccCccCCCCCCcCCCCCCCCCEEEccCccccccCchhhhcCCCCCeEeCC
Q 036117          281 NLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGIS  360 (641)
Q Consensus       281 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~  360 (641)
                      .-..|+++++.++ .+|..+.  ++|+.|++.+|+++. +|.   ..++|++|++++|+++ .+|..   .++|+.|+++
T Consensus       202 ~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~Lt-sLP~l---p~sL~~L~Ls  270 (788)
T PRK15387        202 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPVL---PPGLLELSIF  270 (788)
T ss_pred             CCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccC-cccCc---ccccceeecc
Confidence            3456777777776 3455443  367777777777754 332   2367777777777776 33421   3456666666


Q ss_pred             cccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCC
Q 036117          361 NNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLV  440 (641)
Q Consensus       361 ~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  440 (641)
                      +|.++.+              |.   .+.+|+.|++++|+++. +|.   ..++|+.|++++|++.+ +|..   ...|+
T Consensus       271 ~N~L~~L--------------p~---lp~~L~~L~Ls~N~Lt~-LP~---~p~~L~~LdLS~N~L~~-Lp~l---p~~L~  325 (788)
T PRK15387        271 SNPLTHL--------------PA---LPSGLCKLWIFGNQLTS-LPV---LPPGLQELSVSDNQLAS-LPAL---PSELC  325 (788)
T ss_pred             CCchhhh--------------hh---chhhcCEEECcCCcccc-ccc---cccccceeECCCCcccc-CCCC---ccccc
Confidence            5554433              11   12456667777776663 332   23566666666666663 3331   13455


Q ss_pred             EEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEE
Q 036117          441 KLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRV  520 (641)
Q Consensus       441 ~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L  520 (641)
                      .|++++|.++ .+|...         .+|++|++++|+++ .+|..   .++|+.|++++|++. .+|..   ..+|+.|
T Consensus       326 ~L~Ls~N~L~-~LP~lp---------~~Lq~LdLS~N~Ls-~LP~l---p~~L~~L~Ls~N~L~-~LP~l---~~~L~~L  387 (788)
T PRK15387        326 KLWAYNNQLT-SLPTLP---------SGLQELSVSDNQLA-SLPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKEL  387 (788)
T ss_pred             ccccccCccc-cccccc---------cccceEecCCCccC-CCCCC---Ccccceehhhccccc-cCccc---ccccceE
Confidence            6666666665 233210         14666666666665 33332   234555555555554 23322   1345555


Q ss_pred             ECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCc
Q 036117          521 RLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLT  600 (641)
Q Consensus       521 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  600 (641)
                      ++++|++.+ +|..   .++|+.|++++|++++ +|..   ..+|+.|++++|+++ .+|..+.++++|+.|+|++|+++
T Consensus       388 dLs~N~Lt~-LP~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~sl~~L~~L~~LdLs~N~Ls  458 (788)
T PRK15387        388 IVSGNRLTS-LPVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS  458 (788)
T ss_pred             EecCCcccC-CCCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccChHHhhccCCCeEECCCCCCC
Confidence            555555542 2221   2345555555555542 3322   123445555555554 44555555555555555555555


Q ss_pred             ccCCccc
Q 036117          601 GKIPAQL  607 (641)
Q Consensus       601 ~~ip~~l  607 (641)
                      +.+|..+
T Consensus       459 ~~~~~~L  465 (788)
T PRK15387        459 ERTLQAL  465 (788)
T ss_pred             chHHHHH
Confidence            4444433

>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional

Probab=99.81  E-value=4.5e-19  Score=190.97  Aligned_cols=265  Identities=25%  Similarity=0.331  Sum_probs=134.1

Q ss_pred             CCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEeccccCCCCCCcccCCCCCCCEEEc
Q 036117          112 TKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWL  191 (641)
Q Consensus       112 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l  191 (641)
                      ..-..|+++.+.++ .+|..+.  ++|+.|++.+|+++. +|.   ..++|++|++++|+++.++.    ..++|+.|++
T Consensus       201 ~~~~~LdLs~~~Lt-sLP~~l~--~~L~~L~L~~N~Lt~-LP~---lp~~Lk~LdLs~N~LtsLP~----lp~sL~~L~L  269 (788)
T PRK15387        201 NGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLTSLPV----LPPGLLELSI  269 (788)
T ss_pred             CCCcEEEcCCCCCC-cCCcchh--cCCCEEEccCCcCCC-CCC---CCCCCcEEEecCCccCcccC----cccccceeec
Confidence            34566777777776 5666554  367777777777663 343   23566666666666664432    1245666666


Q ss_pred             CCCCCCCCchhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCcccccCCcccCCCCCCCEEEcCCCcCCcc
Q 036117          192 DYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGT  271 (641)
Q Consensus       192 ~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~  271 (641)
                      ++|.+..+|...   ++|+.|++++|+++ .+|.    ..++|++|++++|.+++ +|..   ..+|+.|++++|.++ .
T Consensus       270 s~N~L~~Lp~lp---~~L~~L~Ls~N~Lt-~LP~----~p~~L~~LdLS~N~L~~-Lp~l---p~~L~~L~Ls~N~L~-~  336 (788)
T PRK15387        270 FSNPLTHLPALP---SGLCKLWIFGNQLT-SLPV----LPPGLQELSVSDNQLAS-LPAL---PSELCKLWAYNNQLT-S  336 (788)
T ss_pred             cCCchhhhhhch---hhcCEEECcCCccc-cccc----cccccceeECCCCcccc-CCCC---cccccccccccCccc-c
Confidence            666655555422   34555555555554 3331    12445555555555542 2221   123444555555444 2


Q ss_pred             CCcccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCccCCCCCCcCCCCCCCCCEEEccCccccccCchhhhcC
Q 036117          272 IPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASL  351 (641)
Q Consensus       272 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~  351 (641)
                      +|.   ...+                        |+.|++++|.+.+ +|..   .++|+.|++++|++.+ +|..   .
T Consensus       337 LP~---lp~~------------------------Lq~LdLS~N~Ls~-LP~l---p~~L~~L~Ls~N~L~~-LP~l---~  381 (788)
T PRK15387        337 LPT---LPSG------------------------LQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLTS-LPAL---P  381 (788)
T ss_pred             ccc---cccc------------------------cceEecCCCccCC-CCCC---Ccccceehhhcccccc-Cccc---c
Confidence            222   1123                        4444444444432 1211   1344555555555542 3321   1


Q ss_pred             CCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcc
Q 036117          352 RQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPS  431 (641)
Q Consensus       352 ~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  431 (641)
                      .+|+.|++++|+++.+              |..   .++|+.|++++|+++. +|..   ..+|+.|++++|+++ .+|.
T Consensus       382 ~~L~~LdLs~N~Lt~L--------------P~l---~s~L~~LdLS~N~Lss-IP~l---~~~L~~L~Ls~NqLt-~LP~  439 (788)
T PRK15387        382 SGLKELIVSGNRLTSL--------------PVL---PSELKELMVSGNRLTS-LPML---PSGLLSLSVYRNQLT-RLPE  439 (788)
T ss_pred             cccceEEecCCcccCC--------------CCc---ccCCCEEEccCCcCCC-CCcc---hhhhhhhhhccCccc-ccCh
Confidence            2444555444433321              111   2356666666666653 3332   234556666666665 5566


Q ss_pred             cccCCCCCCEEEccCCcCcccCCcch
Q 036117          432 TIGNLSSLVKLSLSSNQLTGTLPPEI  457 (641)
Q Consensus       432 ~l~~l~~L~~L~ls~n~l~~~~~~~~  457 (641)
                      .+.++++|+.|++++|++++..+..+
T Consensus       440 sl~~L~~L~~LdLs~N~Ls~~~~~~L  465 (788)
T PRK15387        440 SLIHLSSETTVNLEGNPLSERTLQAL  465 (788)
T ss_pred             HHhhccCCCeEECCCCCCCchHHHHH
Confidence            66666666666666666666555544

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.77  E-value=1.7e-18  Score=187.93  Aligned_cols=246  Identities=26%  Similarity=0.372  Sum_probs=176.1

Q ss_pred             CCCeeeccCccCCCCCCcCCCCCCCCCEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcC
Q 036117          305 RLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPE  384 (641)
Q Consensus       305 ~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~  384 (641)
                      +...|+++++.++. +|..+.  +.++.|++++|+++ .+|..+.  ++|+.|++++|+++.+              |..
T Consensus       179 ~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~Lt-sLP~~l~--~nL~~L~Ls~N~LtsL--------------P~~  238 (754)
T PRK15370        179 NKTELRLKILGLTT-IPACIP--EQITTLILDNNELK-SLPENLQ--GNIKTLYANSNQLTSI--------------PAT  238 (754)
T ss_pred             CceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCC-cCChhhc--cCCCEEECCCCccccC--------------Chh
Confidence            45778888887754 454443  57999999999998 5665543  4788888777766533              332


Q ss_pred             CCCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCC
Q 036117          385 IGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDF  464 (641)
Q Consensus       385 l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~  464 (641)
                      +  .++|+.|++++|++. .+|..+.  .+|+.|++++|++. .+|..+.  ++|++|++++|.++ .+|..+.      
T Consensus       239 l--~~~L~~L~Ls~N~L~-~LP~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp------  303 (754)
T PRK15370        239 L--PDTIQEMELSINRIT-ELPERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP------  303 (754)
T ss_pred             h--hccccEEECcCCccC-cCChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch------
Confidence            2  247899999999887 5666554  57899999999888 5666543  58999999999887 4554332      


Q ss_pred             CCCCccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEE
Q 036117          465 GPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYI  544 (641)
Q Consensus       465 ~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  544 (641)
                        ++|+.|++++|.++ .+|..+.  ++|+.|++++|.+.+ +|..+.  ++|+.|++++|++. .+|..+  .+.|+.|
T Consensus       304 --~sL~~L~Ls~N~Lt-~LP~~l~--~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~l--p~~L~~L  372 (754)
T PRK15370        304 --SGITHLNVQSNSLT-ALPETLP--PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETL--PPTITTL  372 (754)
T ss_pred             --hhHHHHHhcCCccc-cCCcccc--ccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhh--cCCcCEE
Confidence              26888899998887 4555443  578888888888874 665543  67888888888887 355544  3688888


Q ss_pred             eCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCcc----ccCCCCCCEEeCCCCcCc
Q 036117          545 DLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAE----LGNLTYLQNLDIFDNQLT  600 (641)
Q Consensus       545 ~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~----l~~l~~L~~L~L~~n~l~  600 (641)
                      ++++|+++ .+|..+.  ..|+.|++++|++. .+|..    +..++.+..+++.+|+++
T Consensus       373 dLs~N~Lt-~LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls  428 (754)
T PRK15370        373 DVSRNALT-NLPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFS  428 (754)
T ss_pred             ECCCCcCC-CCCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCcc
Confidence            88888888 4455554  36888888888887 44543    344577888888888886

>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional

Probab=99.76  E-value=4.3e-18  Score=184.80  Aligned_cols=279  Identities=25%  Similarity=0.368  Sum_probs=200.9

Q ss_pred             CcccEeeeecccccccCccccCCCCCCCeeeccCccCCCCCCcCCCCCCCCCEEEccCccccccCchhhhcCCCCCeEeC
Q 036117          280 SNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGI  359 (641)
Q Consensus       280 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l  359 (641)
                      .+...|+++++.++. +|..+.  +.++.|++++|.+.. +|..+.  ++|+.|++++|+++ .+|..+.  +.|+.|++
T Consensus       178 ~~~~~L~L~~~~Lts-LP~~Ip--~~L~~L~Ls~N~Lts-LP~~l~--~nL~~L~Ls~N~Lt-sLP~~l~--~~L~~L~L  248 (754)
T PRK15370        178 NNKTELRLKILGLTT-IPACIP--EQITTLILDNNELKS-LPENLQ--GNIKTLYANSNQLT-SIPATLP--DTIQEMEL  248 (754)
T ss_pred             cCceEEEeCCCCcCc-CCcccc--cCCcEEEecCCCCCc-CChhhc--cCCCEEECCCCccc-cCChhhh--ccccEEEC
Confidence            355788999888874 455443  579999999999874 454443  58999999999998 5666543  47888887


Q ss_pred             CcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCC
Q 036117          360 SNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSL  439 (641)
Q Consensus       360 ~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L  439 (641)
                      ++|.+..+              |..+.  .+|+.|++++|+++ .+|..+.  ++|+.|++++|.++ .+|..+.  ++|
T Consensus       249 s~N~L~~L--------------P~~l~--s~L~~L~Ls~N~L~-~LP~~l~--~sL~~L~Ls~N~Lt-~LP~~lp--~sL  306 (754)
T PRK15370        249 SINRITEL--------------PERLP--SALQSLDLFHNKIS-CLPENLP--EELRYLSVYDNSIR-TLPAHLP--SGI  306 (754)
T ss_pred             cCCccCcC--------------ChhHh--CCCCEEECcCCccC-ccccccC--CCCcEEECCCCccc-cCcccch--hhH
Confidence            77766533              33332  47999999999998 4666553  58999999999998 4554432  478


Q ss_pred             CEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcE
Q 036117          440 VKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTR  519 (641)
Q Consensus       440 ~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~  519 (641)
                      +.|++++|.++ .+|..+.        ++|+.|++++|.+++ +|..+.  ++|+.|++++|++. .+|..+.  ++|+.
T Consensus       307 ~~L~Ls~N~Lt-~LP~~l~--------~sL~~L~Ls~N~Lt~-LP~~l~--~sL~~L~Ls~N~L~-~LP~~lp--~~L~~  371 (754)
T PRK15370        307 THLNVQSNSLT-ALPETLP--------PGLKTLEAGENALTS-LPASLP--PELQVLDVSKNQIT-VLPETLP--PTITT  371 (754)
T ss_pred             HHHHhcCCccc-cCCcccc--------ccceeccccCCcccc-CChhhc--CcccEEECCCCCCC-cCChhhc--CCcCE
Confidence            99999999987 4554432        279999999999984 776654  68999999999987 5676553  68999


Q ss_pred             EECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhh----hcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCC
Q 036117          520 VRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNW----GKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIF  595 (641)
Q Consensus       520 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~----~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~  595 (641)
                      |++++|++.. +|..+.  +.|+.|++++|++. .+|..+    ..++.+..+++.+|++..      ..+..|+.+ ++
T Consensus       372 LdLs~N~Lt~-LP~~l~--~sL~~LdLs~N~L~-~LP~sl~~~~~~~~~l~~L~L~~Npls~------~tl~~L~~L-l~  440 (754)
T PRK15370        372 LDVSRNALTN-LPENLP--AALQIMQASRNNLV-RLPESLPHFRGEGPQPTRIIVEYNPFSE------RTIQNMQRL-MS  440 (754)
T ss_pred             EECCCCcCCC-CCHhHH--HHHHHHhhccCCcc-cCchhHHHHhhcCCCccEEEeeCCCccH------HHHHHHHHh-hh
Confidence            9999999984 555443  47999999999998 455544    345788999999999872      334445555 45


Q ss_pred             CCcCccc-CCccccCCCCCCE
Q 036117          596 DNQLTGK-IPAQLFRSSFLIR  615 (641)
Q Consensus       596 ~n~l~~~-ip~~l~~~~~L~~  615 (641)
                      .+.+.|. ++......+.++.
T Consensus       441 s~~~~gp~i~~~~~~~~~l~~  461 (754)
T PRK15370        441 SVGYQGPRVLFAMGDFSIVRV  461 (754)
T ss_pred             cccccCCcccccccccccccc
Confidence            5555543 3333333444443

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.76  E-value=1.6e-19  Score=182.56  Aligned_cols=211  Identities=20%  Similarity=0.280  Sum_probs=117.8

Q ss_pred             hhhCCCCCCeEecccCcCCccCcccccCCCC---CCEEEccCCcCcccC----CcchhcCCCCCCCCCccEEEccCCccc
Q 036117          408 QIGNLTNLFDLQLANNFFNGSIPSTIGNLSS---LVKLSLSSNQLTGTL----PPEIGNSKSDFGPRFLRNVSFSYNNFS  480 (641)
Q Consensus       408 ~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~---L~~L~ls~n~l~~~~----~~~~~~~~~~~~~~~L~~L~ls~n~l~  480 (641)
                      .+..+++|+.|++++|.+.+..+..+..+..   |++|++++|.+.+..    ...+...     +++|++|++++|.++
T Consensus        76 ~l~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~-----~~~L~~L~L~~n~l~  150 (319)
T cd00116          76 GLTKGCGLQELDLSDNALGPDGCGVLESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDL-----PPALEKLVLGRNRLE  150 (319)
T ss_pred             HHHhcCceeEEEccCCCCChhHHHHHHHHhccCcccEEEeeCCccchHHHHHHHHHHHhC-----CCCceEEEcCCCcCC
Confidence            3444455555555555554333333322222   555555555554211    1111222     014566666666555


Q ss_pred             cc----CCccccCCCCCceEeccCCcccCC----CccccccCCCCcEEECCCCcCccc----cCcccCCCCCCcEEeCCC
Q 036117          481 GK----LPPGICRGGNLIYLTANVNKLVGP----IPESLWNCTGLTRVRLEQNRLDGD----ITNALGIYPDLQYIDLGD  548 (641)
Q Consensus       481 ~~----~~~~~~~~~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~  548 (641)
                      +.    ++..+..++.|+.|++++|.+.+.    ++..+..+++|+.|++++|.+.+.    +...+..+++|++|++++
T Consensus       151 ~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~  230 (319)
T cd00116         151 GASCEALAKALRANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGD  230 (319)
T ss_pred             chHHHHHHHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCC
Confidence            21    233344556667777777666532    223344556777777777777533    234456677888888888


Q ss_pred             CcccccCChhhhc-----CCCCCEEeCcCCcCcc----cCCccccCCCCCCEEeCCCCcCccc----CCccccCC-CCCC
Q 036117          549 NQLSGVLTSNWGK-----CTNLSNFRISGNRIKG----GIPAELGNLTYLQNLDIFDNQLTGK----IPAQLFRS-SFLI  614 (641)
Q Consensus       549 n~~~~~~~~~~~~-----l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~----ip~~l~~~-~~L~  614 (641)
                      |++++..+..+..     .+.|++|++++|.+++    .+...+..+++|+++++++|.++..    +...+... +.++
T Consensus       231 n~l~~~~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~  310 (319)
T cd00116         231 NNLTDAGAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELE  310 (319)
T ss_pred             CcCchHHHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchh
Confidence            8777533333322     2678888888887752    2334556667888888888888744    33333334 5778


Q ss_pred             EEeCcCCCC
Q 036117          615 RLNLRRNQL  623 (641)
Q Consensus       615 ~l~l~~n~l  623 (641)
                      ++++.+|++
T Consensus       311 ~~~~~~~~~  319 (319)
T cd00116         311 SLWVKDDSF  319 (319)
T ss_pred             hcccCCCCC
Confidence            888877764

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily

Probab=99.74  E-value=2.2e-19  Score=181.63  Aligned_cols=240  Identities=20%  Similarity=0.228  Sum_probs=179.1

Q ss_pred             CCCCCCCCCEEEccCCcCcCC----chhhhhCCCCCCeEecccCcCCc------cCcccccCCCCCCEEEccCCcCcccC
Q 036117          384 EIGLLPKLEYLYLFDNKFSGP----IPQQIGNLTNLFDLQLANNFFNG------SIPSTIGNLSSLVKLSLSSNQLTGTL  453 (641)
Q Consensus       384 ~l~~~~~L~~L~L~~n~l~~~----~~~~~~~l~~L~~L~l~~n~l~~------~~~~~l~~l~~L~~L~ls~n~l~~~~  453 (641)
                      .+..+.+|++++++++.+++.    ++..+...+++++++++++.+.+      .++..+..+++|++|++++|.+.+..
T Consensus        18 ~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~   97 (319)
T cd00116          18 LLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDG   97 (319)
T ss_pred             HHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhH
Confidence            344456688888888877543    44455667778888888887662      24456777899999999999998666


Q ss_pred             CcchhcCCCCCCCCCccEEEccCCcccc----cCCccccCC-CCCceEeccCCcccCC----CccccccCCCCcEEECCC
Q 036117          454 PPEIGNSKSDFGPRFLRNVSFSYNNFSG----KLPPGICRG-GNLIYLTANVNKLVGP----IPESLWNCTGLTRVRLEQ  524 (641)
Q Consensus       454 ~~~~~~~~~~~~~~~L~~L~ls~n~l~~----~~~~~~~~~-~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~  524 (641)
                      +..+..+...   +.|++|++++|++++    .+...+..+ ++|+.|++++|.+.+.    ++..+..+++|++|++++
T Consensus        98 ~~~~~~l~~~---~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~L~~L~l~~  174 (319)
T cd00116          98 CGVLESLLRS---SSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASCEALAKALRANRDLKELNLAN  174 (319)
T ss_pred             HHHHHHHhcc---CcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHHHHHHHHHHhCCCcCEEECcC
Confidence            6666555411   359999999999874    233445666 8999999999999843    344567788999999999


Q ss_pred             CcCccc----cCcccCCCCCCcEEeCCCCcccccC----ChhhhcCCCCCEEeCcCCcCcccCCcccc-----CCCCCCE
Q 036117          525 NRLDGD----ITNALGIYPDLQYIDLGDNQLSGVL----TSNWGKCTNLSNFRISGNRIKGGIPAELG-----NLTYLQN  591 (641)
Q Consensus       525 n~l~~~----~~~~~~~l~~L~~L~Ls~n~~~~~~----~~~~~~l~~L~~L~L~~n~l~~~~p~~l~-----~l~~L~~  591 (641)
                      |.+.+.    ++..+..++.|+.|++++|.+++..    +..+..+++|++|++++|++++..+..+.     ..+.|+.
T Consensus       175 n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~~~~~l~~~~~~~~~~L~~  254 (319)
T cd00116         175 NGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDAGAAALASALLSPNISLLT  254 (319)
T ss_pred             CCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchHHHHHHHHHHhccCCCceE
Confidence            999853    3344566789999999999987543    34556788999999999999863332222     2479999


Q ss_pred             EeCCCCcCcc----cCCccccCCCCCCEEeCcCCCCccc
Q 036117          592 LDIFDNQLTG----KIPAQLFRSSFLIRLNLRRNQLSDK  626 (641)
Q Consensus       592 L~L~~n~l~~----~ip~~l~~~~~L~~l~l~~n~l~~~  626 (641)
                      |++++|.++.    .++..+..++.|+.+++++|+++..
T Consensus       255 L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~  293 (319)
T cd00116         255 LSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEE  293 (319)
T ss_pred             EEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHH
Confidence            9999999972    2445666778999999999999865

LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.70  E-value=4.5e-19  Score=148.81  Aligned_cols=162  Identities=28%  Similarity=0.452  Sum_probs=141.7

Q ss_pred             CccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCC
Q 036117          468 FLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLG  547 (641)
Q Consensus       468 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls  547 (641)
                      .+..|.+|+|+++ .+|+.+..+.+|+.|++++|++. .+|..++++++|+.|+++-|++. ..|..|+.+|.|+.||+.
T Consensus        34 ~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~levldlt  110 (264)
T KOG0617|consen   34 NITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPALEVLDLT  110 (264)
T ss_pred             hhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchhhhhhcc
Confidence            6777888888887 77888888889999999988887 77888999999999999988887 788999999999999999


Q ss_pred             CCccc-ccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCccccCCCCCCEEeCcCCCCccc
Q 036117          548 DNQLS-GVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDK  626 (641)
Q Consensus       548 ~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~~~L~~l~l~~n~l~~~  626 (641)
                      +|++. ...|..|..++.|+.|++++|.+. .+|..++++++|+.|.+.+|++. ++|.+++.+..|++|.+.+|.++ -
T Consensus       111 ynnl~e~~lpgnff~m~tlralyl~dndfe-~lp~dvg~lt~lqil~lrdndll-~lpkeig~lt~lrelhiqgnrl~-v  187 (264)
T KOG0617|consen  111 YNNLNENSLPGNFFYMTTLRALYLGDNDFE-ILPPDVGKLTNLQILSLRDNDLL-SLPKEIGDLTRLRELHIQGNRLT-V  187 (264)
T ss_pred             ccccccccCCcchhHHHHHHHHHhcCCCcc-cCChhhhhhcceeEEeeccCchh-hCcHHHHHHHHHHHHhcccceee-e
Confidence            99876 468888888999999999999997 88889999999999999999997 79999999999999999999997 6


Q ss_pred             CcccccCCC
Q 036117          627 IPAEIGKLS  635 (641)
Q Consensus       627 ~p~~~~~l~  635 (641)
                      +|..++++.
T Consensus       188 lppel~~l~  196 (264)
T KOG0617|consen  188 LPPELANLD  196 (264)
T ss_pred             cChhhhhhh
Confidence            777777653

>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]

Probab=99.64  E-value=3.9e-18  Score=143.21  Aligned_cols=158  Identities=28%  Similarity=0.437  Sum_probs=96.9

Q ss_pred             CCCCCCCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCC
Q 036117           83 DFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNA  162 (641)
Q Consensus        83 ~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L  162 (641)
                      .+-.+.+++.|.|++|+++ .+|..++.+.+|++|++.+|++. .+|..++.+++|++|+++-|++. ..|..|+.++.|
T Consensus        28 gLf~~s~ITrLtLSHNKl~-~vppnia~l~nlevln~~nnqie-~lp~~issl~klr~lnvgmnrl~-~lprgfgs~p~l  104 (264)
T KOG0617|consen   28 GLFNMSNITRLTLSHNKLT-VVPPNIAELKNLEVLNLSNNQIE-ELPTSISSLPKLRILNVGMNRLN-ILPRGFGSFPAL  104 (264)
T ss_pred             cccchhhhhhhhcccCcee-ecCCcHHHhhhhhhhhcccchhh-hcChhhhhchhhhheecchhhhh-cCccccCCCchh
Confidence            4455667777778888777 56666778888888888888877 67777788888888888877776 667777777777


Q ss_pred             cEEEeccccCCC-CCCcccCCCCCCCEEEcCCCCCCCCchhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccC
Q 036117          163 WLLRIGANYLED-PDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTK  241 (641)
Q Consensus       163 ~~L~l~~n~~~~-~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~  241 (641)
                      ++|++.+|++.. ..+..|..+..|+.|.+++|.++-+|..++++++|+.|.+.+|.+. .+|... +.+..|++|.+.+
T Consensus       105 evldltynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdndll-~lpkei-g~lt~lrelhiqg  182 (264)
T KOG0617|consen  105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDNDLL-SLPKEI-GDLTRLRELHIQG  182 (264)
T ss_pred             hhhhccccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccCchh-hCcHHH-HHHHHHHHHhccc
Confidence            777777776543 2334444444444444444444444444444444444444444443 333332 4444444444444


Q ss_pred             Cccc
Q 036117          242 NSFE  245 (641)
Q Consensus       242 n~~~  245 (641)
                      |+++
T Consensus       183 nrl~  186 (264)
T KOG0617|consen  183 NRLT  186 (264)
T ss_pred             ceee
Confidence            4443

>PLN03150 hypothetical protein; Provisional

Probab=99.52  E-value=7.8e-14  Score=151.39  Aligned_cols=147  Identities=35%  Similarity=0.555  Sum_probs=124.0

Q ss_pred             CcHHHHHHHHHHHhcCCCCCCCCCCCCCCCCCCc-----cccceeeCC---C--CCEEEEEcCCCCCccccCCcCCCCCC
Q 036117           19 SAQKEAKALLNWKSSLVSSSLPSWTAINSNSGPC-----NWNGIQCNE---V--GSISEINLANSGLDGTLDGFDFSAFP   88 (641)
Q Consensus        19 ~~~~~~~~l~~~~~~~~~~~~~~W~~~~~~~~~c-----~~~gv~c~~---~--~~v~~l~l~~~~~~~~~~~~~~~~l~   88 (641)
                      ..++|..||..+|+++..+...+|.+     ++|     .|.|+.|..   .  ..++.|+|+++.+.|.+| ..++.++
T Consensus       369 t~~~~~~aL~~~k~~~~~~~~~~W~g-----~~C~p~~~~w~Gv~C~~~~~~~~~~v~~L~L~~n~L~g~ip-~~i~~L~  442 (623)
T PLN03150        369 TLLEEVSALQTLKSSLGLPLRFGWNG-----DPCVPQQHPWSGADCQFDSTKGKWFIDGLGLDNQGLRGFIP-NDISKLR  442 (623)
T ss_pred             cCchHHHHHHHHHHhcCCcccCCCCC-----CCCCCcccccccceeeccCCCCceEEEEEECCCCCccccCC-HHHhCCC
Confidence            45678999999999886543448964     345     699999952   1  258899999999999888 7899999


Q ss_pred             CCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCC-CCCcEEEe
Q 036117           89 NLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNL-QNAWLLRI  167 (641)
Q Consensus        89 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l-~~L~~L~l  167 (641)
                      +|++|+|++|.+.+.+|..+..+++|++|++++|.+++.+|..++++++|++|++++|.+++.+|..+... .++..+++
T Consensus       443 ~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~  522 (623)
T PLN03150        443 HLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNGNSLSGRVPAALGGRLLHRASFNF  522 (623)
T ss_pred             CCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcCCcccccCChHHhhccccCceEEe
Confidence            99999999999999999999999999999999999999999999999999999999999999999888764 45677777


Q ss_pred             cccc
Q 036117          168 GANY  171 (641)
Q Consensus       168 ~~n~  171 (641)
                      .+|.
T Consensus       523 ~~N~  526 (623)
T PLN03150        523 TDNA  526 (623)
T ss_pred             cCCc
Confidence            7765

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.21  E-value=6.5e-13  Score=132.46  Aligned_cols=191  Identities=28%  Similarity=0.402  Sum_probs=125.8

Q ss_pred             CCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCcc
Q 036117          391 LEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLR  470 (641)
Q Consensus       391 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~  470 (641)
                      -...|++.|++. .+|..+..+..|+.+.+..|.+. .+|..+.++..|++++++.|+++ ..|..++.++       |+
T Consensus        77 t~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~~lt~l~ls~NqlS-~lp~~lC~lp-------Lk  146 (722)
T KOG0532|consen   77 TVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLEALTFLDLSSNQLS-HLPDGLCDLP-------LK  146 (722)
T ss_pred             hhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhhHHHHhhhccchhh-cCChhhhcCc-------ce
Confidence            345667777766 56666666667777777777766 56666777777777777777776 6677777776       77


Q ss_pred             EEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCc
Q 036117          471 NVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQ  550 (641)
Q Consensus       471 ~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  550 (641)
                      .|-+++|+++ .+|..++....|..|+.+.|.+. .+|..+..+.+|+.|+++.|++. ..|..+. .-.|..||+|+|+
T Consensus       147 vli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~-~LpLi~lDfScNk  222 (722)
T KOG0532|consen  147 VLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELC-SLPLIRLDFSCNK  222 (722)
T ss_pred             eEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHh-CCceeeeecccCc
Confidence            7777777776 66776766677777777777776 55566666777777777777766 3444444 3346677777777


Q ss_pred             ccccCChhhhcCCCCCEEeCcCCcCcccCCccc---cCCCCCCEEeCCCC
Q 036117          551 LSGVLTSNWGKCTNLSNFRISGNRIKGGIPAEL---GNLTYLQNLDIFDN  597 (641)
Q Consensus       551 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l---~~l~~L~~L~L~~n  597 (641)
                      ++ .+|-+|.+|+.|++|-|.+|++. ..|..+   +...=-++|+..-|
T Consensus       223 is-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~  270 (722)
T KOG0532|consen  223 IS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQAC  270 (722)
T ss_pred             ee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhc
Confidence            76 66667777777777777777775 344332   22222355555555

>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]

Probab=99.20  E-value=6e-13  Score=132.72  Aligned_cols=194  Identities=27%  Similarity=0.382  Sum_probs=146.4

Q ss_pred             CCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccccCCCC
Q 036117          413 TNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGN  492 (641)
Q Consensus       413 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~  492 (641)
                      .--...|++.|.+. .+|..+..+..|+.+.+..|.+. .+|..++++.      .|.+++++.|+++ .+|..++.++ 
T Consensus        75 tdt~~aDlsrNR~~-elp~~~~~f~~Le~liLy~n~~r-~ip~~i~~L~------~lt~l~ls~NqlS-~lp~~lC~lp-  144 (722)
T KOG0532|consen   75 TDTVFADLSRNRFS-ELPEEACAFVSLESLILYHNCIR-TIPEAICNLE------ALTFLDLSSNQLS-HLPDGLCDLP-  144 (722)
T ss_pred             cchhhhhccccccc-cCchHHHHHHHHHHHHHHhccce-ecchhhhhhh------HHHHhhhccchhh-cCChhhhcCc-
Confidence            33446678888887 77877888888888888888876 7788888887      7888888888887 6777776654 


Q ss_pred             CceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcC
Q 036117          493 LIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISG  572 (641)
Q Consensus       493 L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~  572 (641)
                      |+.|-+++|++. .+|..++..++|..|+.+.|.+. .+|..++.+.+|+.|.++.|++. ..|+++..+ .|..||++.
T Consensus       145 Lkvli~sNNkl~-~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~-~lp~El~~L-pLi~lDfSc  220 (722)
T KOG0532|consen  145 LKVLIVSNNKLT-SLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLE-DLPEELCSL-PLIRLDFSC  220 (722)
T ss_pred             ceeEEEecCccc-cCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhh-hCCHHHhCC-ceeeeeccc
Confidence            777778888876 66777777788888888888776 56666778888888888888877 456666644 478888888


Q ss_pred             CcCcccCCccccCCCCCCEEeCCCCcCcccCCcccc---CCCCCCEEeCcCCC
Q 036117          573 NRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLF---RSSFLIRLNLRRNQ  622 (641)
Q Consensus       573 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~---~~~~L~~l~l~~n~  622 (641)
                      |+++ .+|.+|.+|+.|++|.|.+|++. +-|..+-   ...-.++|+..-|+
T Consensus       221 Nkis-~iPv~fr~m~~Lq~l~LenNPLq-SPPAqIC~kGkVHIFKyL~~qA~q  271 (722)
T KOG0532|consen  221 NKIS-YLPVDFRKMRHLQVLQLENNPLQ-SPPAQICEKGKVHIFKYLSTQACQ  271 (722)
T ss_pred             Ccee-ecchhhhhhhhheeeeeccCCCC-CChHHHHhccceeeeeeecchhcc
Confidence            8887 78888888888888888888887 5565443   23455667777775

>PLN03150 hypothetical protein; Provisional

Probab=99.13  E-value=1.1e-10  Score=127.04  Aligned_cols=106  Identities=31%  Similarity=0.476  Sum_probs=58.6

Q ss_pred             CcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCC
Q 036117          517 LTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFD  596 (641)
Q Consensus       517 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~  596 (641)
                      ++.|+|++|.+.|.+|..++.+++|+.|+|++|.+.+.+|..++.+++|+.|+|++|++.|.+|..++++++|+.|+|++
T Consensus       420 v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls~  499 (623)
T PLN03150        420 IDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLNG  499 (623)
T ss_pred             EEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECcC
Confidence            44555555555555555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             CcCcccCCccccCC-CCCCEEeCcCCC
Q 036117          597 NQLTGKIPAQLFRS-SFLIRLNLRRNQ  622 (641)
Q Consensus       597 n~l~~~ip~~l~~~-~~L~~l~l~~n~  622 (641)
                      |+++|.+|..+... ..+..+++.+|+
T Consensus       500 N~l~g~iP~~l~~~~~~~~~l~~~~N~  526 (623)
T PLN03150        500 NSLSGRVPAALGGRLLHRASFNFTDNA  526 (623)
T ss_pred             CcccccCChHHhhccccCceEEecCCc
Confidence            55555555554432 334455555554

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=99.12  E-value=6e-11  Score=131.59  Aligned_cols=128  Identities=27%  Similarity=0.305  Sum_probs=88.4

Q ss_pred             CEEEEEcCCCCCccccCCcCCCCCCCCCEEECCCCC--CCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEE
Q 036117           64 SISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNN--LVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVL  141 (641)
Q Consensus        64 ~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~--~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  141 (641)
                      .++.+.+-++.+...   ..-...+.|++|-+.+|.  +.......|..++.|++||+++|.-.+.+|..++.+-+||+|
T Consensus       524 ~~rr~s~~~~~~~~~---~~~~~~~~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL  600 (889)
T KOG4658|consen  524 SVRRMSLMNNKIEHI---AGSSENPKLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYL  600 (889)
T ss_pred             heeEEEEeccchhhc---cCCCCCCccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcc
Confidence            445555544443311   122234478888888775  443334446778888888888887767888888888888888


Q ss_pred             EcccccCCCCCChhccCCCCCcEEEeccccCCCCCCcccCCCCCCCEEEcCCCC
Q 036117          142 LLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNL  195 (641)
Q Consensus       142 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~  195 (641)
                      +++++.+. .+|..+.+++.|.+|++..+......+.....+++|++|.+....
T Consensus       601 ~L~~t~I~-~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~  653 (889)
T KOG4658|consen  601 DLSDTGIS-HLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSA  653 (889)
T ss_pred             cccCCCcc-ccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccc
Confidence            88888877 778888888888888888776554556666667777777776544

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.12  E-value=7.9e-12  Score=117.88  Aligned_cols=86  Identities=30%  Similarity=0.341  Sum_probs=36.9

Q ss_pred             CCCCEEEcCCCCCCCCc-----hhhcCCCCCcEEEeeCCcCCCCC---ChhhhcCCCCCcEEeccCCccccc----CCcc
Q 036117          184 ASLTDLWLDYNLLEKFP-----SFIAECSKLMFLDLSDNLIMGHI---PIEQLTHLENLEYLNLTKNSFEGE----IPRE  251 (641)
Q Consensus       184 ~~L~~L~l~~~~~~~l~-----~~l~~~~~L~~L~l~~~~~~~~~---~~~~l~~l~~L~~L~l~~n~~~~~----~~~~  251 (641)
                      ++|+++...+|.+..-+     ..+...+.|+.+.+..|.+...-   -...+.++++|+.||+++|.++..    +...
T Consensus       157 ~~Lrv~i~~rNrlen~ga~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~Laka  236 (382)
T KOG1909|consen  157 PKLRVFICGRNRLENGGATALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKA  236 (382)
T ss_pred             cceEEEEeeccccccccHHHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHH
Confidence            44555555555543222     23444455555555555443111   112234445555555555544321    1122


Q ss_pred             cCCCCCCCEEEcCCCcCC
Q 036117          252 IKTFPKLRHLKLGQNKLT  269 (641)
Q Consensus       252 l~~l~~L~~L~L~~~~l~  269 (641)
                      +..+++|++|++++|.+.
T Consensus       237 L~s~~~L~El~l~dcll~  254 (382)
T KOG1909|consen  237 LSSWPHLRELNLGDCLLE  254 (382)
T ss_pred             hcccchheeecccccccc
Confidence            333444555555555443

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.12  E-value=8.5e-11  Score=122.31  Aligned_cols=200  Identities=32%  Similarity=0.476  Sum_probs=130.8

Q ss_pred             CEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCC-CCCEEEccCCcCcccCCcchhcCCCCCCCCCcc
Q 036117          392 EYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLS-SLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLR  470 (641)
Q Consensus       392 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~-~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~  470 (641)
                      ..+++..+.+..... .+...+.++.+++.+|.++ .++....... +|+.|++++|.+. .+|..+..++      .|+
T Consensus        96 ~~l~~~~~~~~~~~~-~~~~~~~l~~L~l~~n~i~-~i~~~~~~~~~nL~~L~l~~N~i~-~l~~~~~~l~------~L~  166 (394)
T COG4886          96 PSLDLNLNRLRSNIS-ELLELTNLTSLDLDNNNIT-DIPPLIGLLKSNLKELDLSDNKIE-SLPSPLRNLP------NLK  166 (394)
T ss_pred             ceeeccccccccCch-hhhcccceeEEecCCcccc-cCccccccchhhcccccccccchh-hhhhhhhccc------ccc
Confidence            357777777643332 3445577888888888887 5666566663 7888888888876 4444555555      788


Q ss_pred             EEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCc
Q 036117          471 NVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQ  550 (641)
Q Consensus       471 ~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  550 (641)
                      .|++++|+++ .+|......+.|+.|++++|++. .+|........|+++.+++|++. ..+..+..+..+..+.+.+|+
T Consensus       167 ~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~-~~~~~~~~~~~l~~l~l~~n~  243 (394)
T COG4886         167 NLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSII-ELLSSLSNLKNLSGLELSNNK  243 (394)
T ss_pred             ccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcce-ecchhhhhcccccccccCCce
Confidence            8888888776 55555556777777777777776 55544444555777777777533 344455666667777777776


Q ss_pred             ccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCcc
Q 036117          551 LSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQ  606 (641)
Q Consensus       551 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~  606 (641)
                      +... +..++.++.++.|++++|.++ .++. ++.+..++.|++++|.+....|..
T Consensus       244 ~~~~-~~~~~~l~~l~~L~~s~n~i~-~i~~-~~~~~~l~~L~~s~n~~~~~~~~~  296 (394)
T COG4886         244 LEDL-PESIGNLSNLETLDLSNNQIS-SISS-LGSLTNLRELDLSGNSLSNALPLI  296 (394)
T ss_pred             eeec-cchhccccccceecccccccc-cccc-ccccCccCEEeccCccccccchhh
Confidence            6532 455666666777777777776 3333 666777777777777776554443

>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]

Probab=99.11  E-value=3.8e-12  Score=119.99  Aligned_cols=235  Identities=21%  Similarity=0.256  Sum_probs=118.5

Q ss_pred             CCCCCCEEEccCCcCcCCc----hhhhhCCCCCCeEecccCcC---CccCc-------ccccCCCCCCEEEccCCcCccc
Q 036117          387 LLPKLEYLYLFDNKFSGPI----PQQIGNLTNLFDLQLANNFF---NGSIP-------STIGNLSSLVKLSLSSNQLTGT  452 (641)
Q Consensus       387 ~~~~L~~L~L~~n~l~~~~----~~~~~~l~~L~~L~l~~n~l---~~~~~-------~~l~~l~~L~~L~ls~n~l~~~  452 (641)
                      .+.+++++++++|.+...-    ...+.+.++|+..++++-..   ...+|       +.+..+|+|+++++|+|-+...
T Consensus        28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~~  107 (382)
T KOG1909|consen   28 PMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGPK  107 (382)
T ss_pred             ccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCcc
Confidence            3445555555555554322    22233444555555543211   11122       1233445566666666655444


Q ss_pred             CCcchhcCCCCCCCCCccEEEccCCcccccC-------------CccccCCCCCceEeccCCcccCC----CccccccCC
Q 036117          453 LPPEIGNSKSDFGPRFLRNVSFSYNNFSGKL-------------PPGICRGGNLIYLTANVNKLVGP----IPESLWNCT  515 (641)
Q Consensus       453 ~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~-------------~~~~~~~~~L~~L~l~~n~~~~~----~~~~l~~~~  515 (641)
                      .+..+..+-..  ...|++|.+.+|.+...-             -.-..+-+.|+++....|++-..    +...|...+
T Consensus       108 g~~~l~~ll~s--~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen~ga~~~A~~~~~~~  185 (382)
T KOG1909|consen  108 GIRGLEELLSS--CTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLENGGATALAEAFQSHP  185 (382)
T ss_pred             chHHHHHHHHh--ccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeeccccccccHHHHHHHHHhcc
Confidence            33332221100  114566666555543110             01122345566666666665432    123355566


Q ss_pred             CCcEEECCCCcCccc----cCcccCCCCCCcEEeCCCCccccc----CChhhhcCCCCCEEeCcCCcCcccCCccc----
Q 036117          516 GLTRVRLEQNRLDGD----ITNALGIYPDLQYIDLGDNQLSGV----LTSNWGKCTNLSNFRISGNRIKGGIPAEL----  583 (641)
Q Consensus       516 ~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~~p~~l----  583 (641)
                      .|+.+.+..|.+...    ....+..+++|+.|||.+|-++..    +...+..++.|+.|++++|.+...-...+    
T Consensus       186 ~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~~Ga~a~~~al  265 (382)
T KOG1909|consen  186 TLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLENEGAIAFVDAL  265 (382)
T ss_pred             ccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhcccchheeecccccccccccHHHHHHHH
Confidence            677777766666321    234455667777777777766532    23445556667777777776654322222    


Q ss_pred             -cCCCCCCEEeCCCCcCccc----CCccccCCCCCCEEeCcCCCC
Q 036117          584 -GNLTYLQNLDIFDNQLTGK----IPAQLFRSSFLIRLNLRRNQL  623 (641)
Q Consensus       584 -~~l~~L~~L~L~~n~l~~~----ip~~l~~~~~L~~l~l~~n~l  623 (641)
                       ...++|+++++.+|.++..    +...+...+.|+.|+|++|.+
T Consensus       266 ~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l  310 (382)
T KOG1909|consen  266 KESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL  310 (382)
T ss_pred             hccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence             2356777777777776533    223334456777777777776

>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]

Probab=99.10  E-value=1.3e-10  Score=121.02  Aligned_cols=198  Identities=35%  Similarity=0.520  Sum_probs=108.2

Q ss_pred             CEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCC-CCCEEEccCCcCcCCchhhh
Q 036117          331 TFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLP-KLEYLYLFDNKFSGPIPQQI  409 (641)
Q Consensus       331 ~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~-~L~~L~L~~n~l~~~~~~~~  409 (641)
                      ..++...+.+... ...+...+.++.+++.+|.+.++              ++...... +|+.|++++|++. .+|..+
T Consensus        96 ~~l~~~~~~~~~~-~~~~~~~~~l~~L~l~~n~i~~i--------------~~~~~~~~~nL~~L~l~~N~i~-~l~~~~  159 (394)
T COG4886          96 PSLDLNLNRLRSN-ISELLELTNLTSLDLDNNNITDI--------------PPLIGLLKSNLKELDLSDNKIE-SLPSPL  159 (394)
T ss_pred             ceeeccccccccC-chhhhcccceeEEecCCcccccC--------------ccccccchhhcccccccccchh-hhhhhh
Confidence            3566666666422 22334445666666666665544              23333342 6777777777666 344456


Q ss_pred             hCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccccC
Q 036117          410 GNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICR  489 (641)
Q Consensus       410 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~  489 (641)
                      ..+++|+.|++++|++. .++......+.|+.|++++|.+. .+|.......      .|+++.+++|+.. ..+..+..
T Consensus       160 ~~l~~L~~L~l~~N~l~-~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~------~L~~l~~~~N~~~-~~~~~~~~  230 (394)
T COG4886         160 RNLPNLKNLDLSFNDLS-DLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLS------ALEELDLSNNSII-ELLSSLSN  230 (394)
T ss_pred             hccccccccccCCchhh-hhhhhhhhhhhhhheeccCCccc-cCchhhhhhh------hhhhhhhcCCcce-ecchhhhh
Confidence            66677777777777766 44444445666667777776665 4444332222      4666666666422 34444555


Q ss_pred             CCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCC
Q 036117          490 GGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLT  556 (641)
Q Consensus       490 ~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~  556 (641)
                      +..+..+.+.+|++. ..+..+..++.+++|++++|.++....  ++.+.+++.|++++|.+....+
T Consensus       231 ~~~l~~l~l~~n~~~-~~~~~~~~l~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~~  294 (394)
T COG4886         231 LKNLSGLELSNNKLE-DLPESIGNLSNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNALP  294 (394)
T ss_pred             cccccccccCCceee-eccchhccccccceecccccccccccc--ccccCccCEEeccCccccccch
Confidence            555555555555554 223444555555555655555553322  4555555555655555554444

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.10  E-value=2e-11  Score=112.46  Aligned_cols=136  Identities=27%  Similarity=0.270  Sum_probs=90.3

Q ss_pred             cccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCC
Q 036117          486 GICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNL  565 (641)
Q Consensus       486 ~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L  565 (641)
                      .+.....|+++|+++|.++ .+.++..-.|.++.|+++.|.+...  ..+..+++|+.||+|+|.++.. ...-..+.++
T Consensus       279 ~~dTWq~LtelDLS~N~I~-~iDESvKL~Pkir~L~lS~N~i~~v--~nLa~L~~L~~LDLS~N~Ls~~-~Gwh~KLGNI  354 (490)
T KOG1259|consen  279 SADTWQELTELDLSGNLIT-QIDESVKLAPKLRRLILSQNRIRTV--QNLAELPQLQLLDLSGNLLAEC-VGWHLKLGNI  354 (490)
T ss_pred             ecchHhhhhhccccccchh-hhhhhhhhccceeEEeccccceeee--hhhhhcccceEeecccchhHhh-hhhHhhhcCE
Confidence            3444556777777777776 4444555567777888888777632  2366777888888888876632 2222356677


Q ss_pred             CEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccC-CccccCCCCCCEEeCcCCCCcccC
Q 036117          566 SNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKI-PAQLFRSSFLIRLNLRRNQLSDKI  627 (641)
Q Consensus       566 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i-p~~l~~~~~L~~l~l~~n~l~~~~  627 (641)
                      +.|.|+.|.+...  ++++.+-+|..||+++|++...- -.++++++-|+.+.+.+|++.+..
T Consensus       355 KtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~~~v  415 (490)
T KOG1259|consen  355 KTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLAGSV  415 (490)
T ss_pred             eeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCccccc
Confidence            7888888877532  55777778888888888776321 246777777888888888877543

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.06  E-value=1.1e-10  Score=103.69  Aligned_cols=123  Identities=24%  Similarity=0.282  Sum_probs=39.0

Q ss_pred             CCCCCceEeccCCcccCCCccccc-cCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhh-hcCCCCC
Q 036117          489 RGGNLIYLTANVNKLVGPIPESLW-NCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNW-GKCTNLS  566 (641)
Q Consensus       489 ~~~~L~~L~l~~n~~~~~~~~~l~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~-~~l~~L~  566 (641)
                      ++..+++|++++|.+.. + +.+. .+.+|+.|++++|.+...  ..+..++.|++|++++|.++.. .+.+ ..+++|+
T Consensus        17 n~~~~~~L~L~~n~I~~-I-e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~L~   91 (175)
T PF14580_consen   17 NPVKLRELNLRGNQIST-I-ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPNLQ   91 (175)
T ss_dssp             ---------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT--
T ss_pred             ccccccccccccccccc-c-cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcc-ccchHHhCCcCC
Confidence            34456777777777763 2 2343 456677777777777643  2355667777777777777743 2233 3567777


Q ss_pred             EEeCcCCcCcccC-CccccCCCCCCEEeCCCCcCcccCCc----cccCCCCCCEEe
Q 036117          567 NFRISGNRIKGGI-PAELGNLTYLQNLDIFDNQLTGKIPA----QLFRSSFLIRLN  617 (641)
Q Consensus       567 ~L~L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~ip~----~l~~~~~L~~l~  617 (641)
                      +|++++|++...- -..+..+++|++|+|.+|++... +.    -+..+++|+.||
T Consensus        92 ~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD  146 (175)
T PF14580_consen   92 ELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLD  146 (175)
T ss_dssp             EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEET
T ss_pred             EEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeC
Confidence            7777777765321 14456667777777777777632 21    233456666665

>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A

Probab=99.06  E-value=1.1e-10  Score=103.70  Aligned_cols=126  Identities=28%  Similarity=0.300  Sum_probs=39.6

Q ss_pred             CCCCCCCCEEECCCCCCCccCchhcc-CCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhc-cCCCC
Q 036117           84 FSAFPNLTALNLNMNNLVGSIPAGIG-NATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQL-SNLQN  161 (641)
Q Consensus        84 ~~~l~~L~~L~L~~n~~~~~~~~~l~-~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l-~~l~~  161 (641)
                      +.+..++++|+|++|.++..  +.++ .+.+|+.|++++|.++..  ..+..+++|++|++++|+++.. ...+ ..+++
T Consensus        15 ~~n~~~~~~L~L~~n~I~~I--e~L~~~l~~L~~L~Ls~N~I~~l--~~l~~L~~L~~L~L~~N~I~~i-~~~l~~~lp~   89 (175)
T PF14580_consen   15 YNNPVKLRELNLRGNQISTI--ENLGATLDKLEVLDLSNNQITKL--EGLPGLPRLKTLDLSNNRISSI-SEGLDKNLPN   89 (175)
T ss_dssp             -----------------------S--TT-TT--EEE-TTS--S----TT----TT--EEE--SS---S--CHHHHHH-TT
T ss_pred             cccccccccccccccccccc--cchhhhhcCCCEEECCCCCCccc--cCccChhhhhhcccCCCCCCcc-ccchHHhCCc
Confidence            44455678888888877632  2344 467788888888888743  2466778888888888888743 3333 45777


Q ss_pred             CcEEEeccccCCCCCC-cccCCCCCCCEEEcCCCCCCCCch----hhcCCCCCcEEEe
Q 036117          162 AWLLRIGANYLEDPDP-VKFKGMASLTDLWLDYNLLEKFPS----FIAECSKLMFLDL  214 (641)
Q Consensus       162 L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~~~~~~l~~----~l~~~~~L~~L~l  214 (641)
                      |++|++++|++.+... ..+..+++|++|++.+|++..-+.    .+..+|+|+.||-
T Consensus        90 L~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~~~YR~~vi~~lP~Lk~LD~  147 (175)
T PF14580_consen   90 LQELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEKKNYRLFVIYKLPSLKVLDG  147 (175)
T ss_dssp             --EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGSTTHHHHHHHH-TT-SEETT
T ss_pred             CCEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccchhhHHHHHHHHcChhheeCC
Confidence            8888888877765432 344555666666666665532221    3344444444443

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.03  E-value=3.8e-11  Score=116.42  Aligned_cols=211  Identities=23%  Similarity=0.174  Sum_probs=121.5

Q ss_pred             CCCCCCCEEECCCCCCCccCc-hhccCCCCCCEEECCCCcCCCCC--ccccCCCCCCCEEEcccccCCCCCChhc-cCCC
Q 036117           85 SAFPNLTALNLNMNNLVGSIP-AGIGNATKLILLDLSSNNLTNPI--PPEIGYLSDLRVLLLYNNSLTGQIPHQL-SNLQ  160 (641)
Q Consensus        85 ~~l~~L~~L~L~~n~~~~~~~-~~l~~l~~L~~L~L~~n~l~~~~--p~~l~~l~~L~~L~l~~n~~~~~~~~~l-~~l~  160 (641)
                      +++..|+++.|.++.+..... .....|++++.|||++|-+....  ..-...+++|+.|+++.|++........ ..++
T Consensus       118 sn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~  197 (505)
T KOG3207|consen  118 SNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS  197 (505)
T ss_pred             hhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence            356667777776666542211 34556777777777777665331  1223466777777777776653222211 2456


Q ss_pred             CCcEEEeccccCCCCCCc-ccCCCCCCCEEEcCCCC-CCCCchhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEe
Q 036117          161 NAWLLRIGANYLEDPDPV-KFKGMASLTDLWLDYNL-LEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLN  238 (641)
Q Consensus       161 ~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~l~~~~-~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~  238 (641)
                      +|+.|.++.|.++..... ....+|+|+.|.+..|. +..-......++.|+.|||++|++...-.....+.++.|..|+
T Consensus       198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li~~~~~~~~~~l~~L~~Ln  277 (505)
T KOG3207|consen  198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLIDFDQGYKVGTLPGLNQLN  277 (505)
T ss_pred             hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCcccccccccccccccchhhhh
Confidence            677777777766633222 23556777777777773 2222223344566777777777766322222336677777777


Q ss_pred             ccCCccccc-CCcc-----cCCCCCCCEEEcCCCcCCcc-CCcccCCCCcccEeeeeccccccc
Q 036117          239 LTKNSFEGE-IPRE-----IKTFPKLRHLKLGQNKLTGT-IPDEIGLLSNLEILEFHENLFHGL  295 (641)
Q Consensus       239 l~~n~~~~~-~~~~-----l~~l~~L~~L~L~~~~l~~~-~~~~l~~~~~L~~L~l~~n~~~~~  295 (641)
                      ++.+.+.+. .|+.     ...+++|++|++..|++... .-..+..+++|+.|.+..|.+...
T Consensus       278 ls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N~I~~w~sl~~l~~l~nlk~l~~~~n~ln~e  341 (505)
T KOG3207|consen  278 LSSTGIASIAEPDVESLDKTHTFPKLEYLNISENNIRDWRSLNHLRTLENLKHLRITLNYLNKE  341 (505)
T ss_pred             ccccCcchhcCCCccchhhhcccccceeeecccCccccccccchhhccchhhhhhccccccccc
Confidence            777776542 2222     34567888888888887421 112344566777777777776644

>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]

Probab=99.01  E-value=5.5e-11  Score=115.36  Aligned_cols=9  Identities=22%  Similarity=1.069  Sum_probs=5.7

Q ss_pred             cccceeeCC
Q 036117           53 NWNGIQCNE   61 (641)
Q Consensus        53 ~~~gv~c~~   61 (641)
                      .|.||..++
T Consensus        30 ~w~GvEWDd   38 (505)
T KOG3207|consen   30 KWYGVEWDD   38 (505)
T ss_pred             cceeeEecC
Confidence            477776654

>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]

Probab=99.01  E-value=7.7e-11  Score=108.64  Aligned_cols=59  Identities=27%  Similarity=0.421  Sum_probs=24.6

Q ss_pred             CCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCccc-CCccccCCCCCCEEeCCCCcCc
Q 036117          540 DLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGG-IPAELGNLTYLQNLDIFDNQLT  600 (641)
Q Consensus       540 ~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~  600 (641)
                      +.++|.+++|.+...  ..++.+.+|..||+++|++... -...+++++.|+.+.|.+|++.
T Consensus       353 NIKtL~La~N~iE~L--SGL~KLYSLvnLDl~~N~Ie~ldeV~~IG~LPCLE~l~L~~NPl~  412 (490)
T KOG1259|consen  353 NIKTLKLAQNKIETL--SGLRKLYSLVNLDLSSNQIEELDEVNHIGNLPCLETLRLTGNPLA  412 (490)
T ss_pred             CEeeeehhhhhHhhh--hhhHhhhhheeccccccchhhHHHhcccccccHHHHHhhcCCCcc
Confidence            344444444443321  2233444444444444444321 1133444555555555555544

>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]

Probab=98.95  E-value=2.8e-10  Score=126.30  Aligned_cols=128  Identities=24%  Similarity=0.325  Sum_probs=97.8

Q ss_pred             CEEEEEcCCCCC-ccccCCcCCCCCCCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEE
Q 036117           64 SISEINLANSGL-DGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLL  142 (641)
Q Consensus        64 ~v~~l~l~~~~~-~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  142 (641)
                      .++++-+..+.. -..++...|..++.|++|||++|.-.+.+|..++.+-+||+|+++++.+. .+|..+++++.|.+|+
T Consensus       546 ~L~tLll~~n~~~l~~is~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~-~LP~~l~~Lk~L~~Ln  624 (889)
T KOG4658|consen  546 KLRTLLLQRNSDWLLEISGEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGIS-HLPSGLGNLKKLIYLN  624 (889)
T ss_pred             ccceEEEeecchhhhhcCHHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCcc-ccchHHHHHHhhheec
Confidence            577777777652 22333244889999999999998777789999999999999999999999 8999999999999999


Q ss_pred             cccccCCCCCChhccCCCCCcEEEecccc--CCCCCCcccCCCCCCCEEEcC
Q 036117          143 LYNNSLTGQIPHQLSNLQNAWLLRIGANY--LEDPDPVKFKGMASLTDLWLD  192 (641)
Q Consensus       143 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~--~~~~~~~~l~~l~~L~~L~l~  192 (641)
                      +..+.....+|.....+++|++|.+....  ........+..+.+|+.+...
T Consensus       625 l~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~  676 (889)
T KOG4658|consen  625 LEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLLKELENLEHLENLSIT  676 (889)
T ss_pred             cccccccccccchhhhcccccEEEeeccccccchhhHHhhhcccchhhheee
Confidence            99987666667788889999999997654  122222333444444444443

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.75  E-value=5e-09  Score=76.28  Aligned_cols=59  Identities=27%  Similarity=0.495  Sum_probs=28.6

Q ss_pred             CCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCc
Q 036117          540 DLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQ  598 (641)
Q Consensus       540 ~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~  598 (641)
                      +|++|++++|+++...+..|.++++|++|++++|++....|..|.++++|++|++++|+
T Consensus         2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~   60 (61)
T PF13855_consen    2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNN   60 (61)
T ss_dssp             TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSS
T ss_pred             cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCc
Confidence            34445555554444444444445555555555555544444444555555555555444

...

>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A

Probab=98.69  E-value=1.2e-08  Score=74.27  Aligned_cols=61  Identities=23%  Similarity=0.437  Sum_probs=38.7

Q ss_pred             CCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcC
Q 036117          515 TGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRI  575 (641)
Q Consensus       515 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l  575 (641)
                      |+|++|++++|++....+..|..+++|++|++++|+++...+..|.++++|++|++++|++
T Consensus         1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l   61 (61)
T PF13855_consen    1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL   61 (61)
T ss_dssp             TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred             CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence            3456666666666655555666666666666666666666666666666666666666653

...

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.67  E-value=2.5e-09  Score=111.46  Aligned_cols=129  Identities=29%  Similarity=0.294  Sum_probs=63.9

Q ss_pred             CCCCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEE
Q 036117           86 AFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLL  165 (641)
Q Consensus        86 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L  165 (641)
                      .+..++.+++..|.+.. +-..+..+++|++|++.+|.+... ...+..+++|++|++++|.|+..  ..+..++.|+.|
T Consensus        70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i--~~l~~l~~L~~L  145 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL--EGLSTLTLLKEL  145 (414)
T ss_pred             HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccc--cchhhccchhhh
Confidence            34455555555555542 222345566666666666666532 22245556666666666665533  123344445555


Q ss_pred             EeccccCCCCCCcccCCCCCCCEEEcCCCCCCCCchh-hcCCCCCcEEEeeCCcCC
Q 036117          166 RIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSF-IAECSKLMFLDLSDNLIM  220 (641)
Q Consensus       166 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~-l~~~~~L~~L~l~~~~~~  220 (641)
                      ++++|.+..+.  .+..++.|+.+++++|.+..+... ...+.+++.+++.+|.+.
T Consensus       146 ~l~~N~i~~~~--~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  146 NLSGNLISDIS--GLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNSIR  199 (414)
T ss_pred             eeccCcchhcc--CCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCchh
Confidence            55555554332  222245555555555555444332 344445555555555443

>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]

Probab=98.63  E-value=4.3e-09  Score=109.61  Aligned_cols=129  Identities=26%  Similarity=0.280  Sum_probs=78.6

Q ss_pred             CCCCCCeeeccCccCCCCCCcCCCCCCCCCEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccC
Q 036117          302 NLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKL  381 (641)
Q Consensus       302 ~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~  381 (641)
                      .+..++.+.+..|.+.. ....+..+.+|+.+++.+|++... ...+..+++|+.|++++|.|+.+              
T Consensus        70 ~l~~l~~l~l~~n~i~~-~~~~l~~~~~l~~l~l~~n~i~~i-~~~l~~~~~L~~L~ls~N~I~~i--------------  133 (414)
T KOG0531|consen   70 SLTSLKELNLRQNLIAK-ILNHLSKLKSLEALDLYDNKIEKI-ENLLSSLVNLQVLDLSFNKITKL--------------  133 (414)
T ss_pred             HhHhHHhhccchhhhhh-hhcccccccceeeeeccccchhhc-ccchhhhhcchheeccccccccc--------------
Confidence            44555666666666644 223356667778888888777733 22255667777777777776665              


Q ss_pred             CcCCCCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCc-ccccCCCCCCEEEccCCcCc
Q 036117          382 PPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIP-STIGNLSSLVKLSLSSNQLT  450 (641)
Q Consensus       382 ~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~ls~n~l~  450 (641)
                       ..+..++.|+.|++++|.+...  ..+..++.|+.+++++|.+...-+ . ...+.+++.+++.+|.+.
T Consensus       134 -~~l~~l~~L~~L~l~~N~i~~~--~~~~~l~~L~~l~l~~n~i~~ie~~~-~~~~~~l~~l~l~~n~i~  199 (414)
T KOG0531|consen  134 -EGLSTLTLLKELNLSGNLISDI--SGLESLKSLKLLDLSYNRIVDIENDE-LSELISLEELDLGGNSIR  199 (414)
T ss_pred             -cchhhccchhhheeccCcchhc--cCCccchhhhcccCCcchhhhhhhhh-hhhccchHHHhccCCchh
Confidence             2344455577777777776633  234456677777777777663222 1 355666666667666654

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.56  E-value=2.1e-09  Score=99.35  Aligned_cols=130  Identities=25%  Similarity=0.260  Sum_probs=76.0

Q ss_pred             CCCEEECCCCCCCc-cCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEccccc-CCCC-CChhccCCCCCcEE
Q 036117           89 NLTALNLNMNNLVG-SIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNS-LTGQ-IPHQLSNLQNAWLL  165 (641)
Q Consensus        89 ~L~~L~L~~n~~~~-~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~-~~~~-~~~~l~~l~~L~~L  165 (641)
                      +|++|||+...++. .+...++.|.+|+.|.+.++++.+.+...+.+-.+|+.|+++.+. ++.. ..-.+.+++.|..|
T Consensus       186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L  265 (419)
T KOG2120|consen  186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL  265 (419)
T ss_pred             hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence            57788888777653 234456677888888888888877777777777788888887764 3321 11235667777777


Q ss_pred             EeccccCCCCCCc-ccCC-CCCCCEEEcCCCCC----CCCchhhcCCCCCcEEEeeCCc
Q 036117          166 RIGANYLEDPDPV-KFKG-MASLTDLWLDYNLL----EKFPSFIAECSKLMFLDLSDNL  218 (641)
Q Consensus       166 ~l~~n~~~~~~~~-~l~~-l~~L~~L~l~~~~~----~~l~~~l~~~~~L~~L~l~~~~  218 (641)
                      +++.+.+...... .... -++|+.|+++++.-    ..+......+++|.+||+++|.
T Consensus       266 NlsWc~l~~~~Vtv~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v  324 (419)
T KOG2120|consen  266 NLSWCFLFTEKVTVAVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSV  324 (419)
T ss_pred             CchHhhccchhhhHHHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccccc
Confidence            7777664433211 1111 23556666655532    2233334445555555555443

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.51  E-value=3.4e-08  Score=91.42  Aligned_cols=185  Identities=21%  Similarity=0.209  Sum_probs=119.5

Q ss_pred             CCCCCCEEECCCCCCCc--cCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCC-CCChhccCCCCC
Q 036117           86 AFPNLTALNLNMNNLVG--SIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTG-QIPHQLSNLQNA  162 (641)
Q Consensus        86 ~l~~L~~L~L~~n~~~~--~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~-~~~~~l~~l~~L  162 (641)
                      ...+++++||.+|.+++  .+...+.++|+|++|+++.|.+...+-..=...++|++|-|.+..+.- .....+..++.+
T Consensus        69 ~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~v  148 (418)
T KOG2982|consen   69 SVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKV  148 (418)
T ss_pred             HhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhh
Confidence            56789999999999874  355667899999999999998875432211356789999998877652 344567788889


Q ss_pred             cEEEeccccCCCCCC--cccCC-CCCCCEEEcCCCCCC---CCchhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcE
Q 036117          163 WLLRIGANYLEDPDP--VKFKG-MASLTDLWLDYNLLE---KFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEY  236 (641)
Q Consensus       163 ~~L~l~~n~~~~~~~--~~l~~-l~~L~~L~l~~~~~~---~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~  236 (641)
                      +.|.++.|.+.....  ..... -+.+++|+...|...   .+-..-.-++++..+.+..|.+...-...-+..++.+-.
T Consensus       149 telHmS~N~~rq~n~Dd~c~e~~s~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~p~~~~  228 (418)
T KOG2982|consen  149 TELHMSDNSLRQLNLDDNCIEDWSTEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPFPSLSC  228 (418)
T ss_pred             hhhhhccchhhhhccccccccccchhhhhhhcCCcHHHHHHHHHhHHhhcccchheeeecCcccchhhcccCCCCCcchh
Confidence            999888885332211  11222 235666666666542   222233446777778888777764444444455666667


Q ss_pred             EeccCCccccc-CCcccCCCCCCCEEEcCCCcCCc
Q 036117          237 LNLTKNSFEGE-IPREIKTFPKLRHLKLGQNKLTG  270 (641)
Q Consensus       237 L~l~~n~~~~~-~~~~l~~l~~L~~L~L~~~~l~~  270 (641)
                      |+++.+++.+- ..+.+..++.|..|.+.++.+..
T Consensus       229 LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d  263 (418)
T KOG2982|consen  229 LNLGANNIDSWASVDALNGFPQLVDLRVSENPLSD  263 (418)
T ss_pred             hhhcccccccHHHHHHHcCCchhheeeccCCcccc
Confidence            77777766531 22345566677777777666553

>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]

Probab=98.50  E-value=9e-10  Score=101.71  Aligned_cols=158  Identities=21%  Similarity=0.147  Sum_probs=71.8

Q ss_pred             CCCCCCEEEcCCCCC-CCCchhhcCCCCCcEEEeeCCc-CCCCCChhhhcCCCCCcEEeccCCcccccCCccc-C-CCCC
Q 036117          182 GMASLTDLWLDYNLL-EKFPSFIAECSKLMFLDLSDNL-IMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREI-K-TFPK  257 (641)
Q Consensus       182 ~l~~L~~L~l~~~~~-~~l~~~l~~~~~L~~L~l~~~~-~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l-~-~l~~  257 (641)
                      .|.+|+.|.+.++.+ +.+...+.+..+|+.|+++.+. ++.......+.+++.|..|++++|.........+ . --++
T Consensus       208 ~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv~V~hise~  287 (419)
T KOG2120|consen  208 QCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTVAVAHISET  287 (419)
T ss_pred             HHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhcCchHhhccchhhhHHHhhhchh
Confidence            344444444444444 3333344444455555554432 2211112233455555555555554332211111 1 1234


Q ss_pred             CCEEEcCCCcCC---ccCCcccCCCCcccEeeeeccc-ccccCccccCCCCCCCeeeccCccCCCCCCc---CCCCCCCC
Q 036117          258 LRHLKLGQNKLT---GTIPDEIGLLSNLEILEFHENL-FHGLIPSSLGNLRRLQRLNLKSAGLNSSIPK---ELGFCANL  330 (641)
Q Consensus       258 L~~L~L~~~~l~---~~~~~~l~~~~~L~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~---~l~~~~~L  330 (641)
                      |+.|+++++.-.   ..+..-...+++|.+||+++|. ++......+.+++.|+++.++.|..  ..|.   .+...|.|
T Consensus       288 l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~--i~p~~~~~l~s~psl  365 (419)
T KOG2120|consen  288 LTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYD--IIPETLLELNSKPSL  365 (419)
T ss_pred             hhhhhhhhhHhhhhhhHHHHHHHhCCceeeeccccccccCchHHHHHHhcchheeeehhhhcC--CChHHeeeeccCcce
Confidence            555555554211   0111112356666666666653 2222334455666677777666642  2222   34556777


Q ss_pred             CEEEccCcccc
Q 036117          331 TFLELSINNLT  341 (641)
Q Consensus       331 ~~L~l~~n~l~  341 (641)
                      .+|++.++--.
T Consensus       366 ~yLdv~g~vsd  376 (419)
T KOG2120|consen  366 VYLDVFGCVSD  376 (419)
T ss_pred             EEEEeccccCc
Confidence            77777765433

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.47  E-value=1.1e-09  Score=112.70  Aligned_cols=126  Identities=23%  Similarity=0.192  Sum_probs=72.7

Q ss_pred             CccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCc-ccCCCCCCcEEeC
Q 036117          468 FLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITN-ALGIYPDLQYIDL  546 (641)
Q Consensus       468 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~L~L  546 (641)
                      .|...++++|.+. .+...+.-++.++.|++++|++..-.  .+..|++|+.|||+.|.+.. +|. .-..+. |+.|.+
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v~--~Lr~l~~LkhLDlsyN~L~~-vp~l~~~gc~-L~~L~l  239 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKVD--NLRRLPKLKHLDLSYNCLRH-VPQLSMVGCK-LQLLNL  239 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhhH--HHHhcccccccccccchhcc-ccccchhhhh-heeeee
Confidence            5777777777775 45555655666777777777765322  45666667777777666652 222 112222 666666


Q ss_pred             CCCcccccCChhhhcCCCCCEEeCcCCcCcccCC-ccccCCCCCCEEeCCCCcCc
Q 036117          547 GDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIP-AELGNLTYLQNLDIFDNQLT  600 (641)
Q Consensus       547 s~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~  600 (641)
                      ++|.++..  ..+.++.+|+.||+++|-+.+.-. ..++.+.+|++|.|.+|++-
T Consensus       240 rnN~l~tL--~gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  240 RNNALTTL--RGIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             cccHHHhh--hhHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            66665533  235566666666666665543211 22445556666666666664

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=98.45  E-value=9.1e-09  Score=84.05  Aligned_cols=138  Identities=22%  Similarity=0.269  Sum_probs=106.8

Q ss_pred             CceEeccCCcccCCCc---cccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEe
Q 036117          493 LIYLTANVNKLVGPIP---ESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFR  569 (641)
Q Consensus       493 L~~L~l~~n~~~~~~~---~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~  569 (641)
                      +..++++.|.+. .++   ..+.....|+.+++++|.+....+..-..+|..+.|++++|.++ .+|+++..++.|+.|+
T Consensus        29 ~h~ldLssc~lm-~i~davy~l~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neis-dvPeE~Aam~aLr~lN  106 (177)
T KOG4579|consen   29 LHFLDLSSCQLM-YIADAVYMLSKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEIS-DVPEELAAMPALRSLN  106 (177)
T ss_pred             hhhcccccchhh-HHHHHHHHHhCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhh-hchHHHhhhHHhhhcc
Confidence            455667777665 233   33455667888899999998665555566789999999999999 6677899999999999


Q ss_pred             CcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCccccCCCCCCEEeCcCCCCcccCcccccCC
Q 036117          570 ISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIPAEIGKL  634 (641)
Q Consensus       570 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~~~L~~l~l~~n~l~~~~p~~~~~l  634 (641)
                      ++.|++. ..|..+..+.++..|+..+|... +||..+..-+..-..++.++++.+..|..+..+
T Consensus       107 l~~N~l~-~~p~vi~~L~~l~~Lds~~na~~-eid~dl~~s~~~al~~lgnepl~~~~~~klqa~  169 (177)
T KOG4579|consen  107 LRFNPLN-AEPRVIAPLIKLDMLDSPENARA-EIDVDLFYSSLPALIKLGNEPLGDETKKKLQAL  169 (177)
T ss_pred             cccCccc-cchHHHHHHHhHHHhcCCCCccc-cCcHHHhccccHHHHHhcCCcccccCccccccc
Confidence            9999998 66777777999999999999886 788775544445556788999998888665443

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.33  E-value=2e-07  Score=85.34  Aligned_cols=87  Identities=23%  Similarity=0.190  Sum_probs=37.1

Q ss_pred             CCCCCEEEcCCCCCCCCch-----hhcCCCCCcEEEeeCCcCCCCCC----hhhhcCCCCCcEEeccCCcccccC----C
Q 036117          183 MASLTDLWLDYNLLEKFPS-----FIAECSKLMFLDLSDNLIMGHIP----IEQLTHLENLEYLNLTKNSFEGEI----P  249 (641)
Q Consensus       183 l~~L~~L~l~~~~~~~l~~-----~l~~~~~L~~L~l~~~~~~~~~~----~~~l~~l~~L~~L~l~~n~~~~~~----~  249 (641)
                      -|.|++..+..|.+..-+.     .+..-..|+.+.+..|.+.-...    ..-+..+.+|+.||++.|.++-..    .
T Consensus       156 kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La  235 (388)
T COG5238         156 KPKLEVVICGRNRLENGSKELSAALLESHENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLA  235 (388)
T ss_pred             CCCceEEEeccchhccCcHHHHHHHHHhhcCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHH
Confidence            3455555555555533332     22222355555555555541100    001123445555555555444211    1


Q ss_pred             cccCCCCCCCEEEcCCCcCC
Q 036117          250 REIKTFPKLRHLKLGQNKLT  269 (641)
Q Consensus       250 ~~l~~l~~L~~L~L~~~~l~  269 (641)
                      ..+...+.|++|.+.+|-++
T Consensus       236 ~al~~W~~lrEL~lnDClls  255 (388)
T COG5238         236 DALCEWNLLRELRLNDCLLS  255 (388)
T ss_pred             HHhcccchhhhccccchhhc
Confidence            12233344555555555444

>KOG2982 consensus Uncharacterized conserved protein [Function unknown]

Probab=98.32  E-value=1.4e-07  Score=87.47  Aligned_cols=85  Identities=24%  Similarity=0.272  Sum_probs=48.0

Q ss_pred             CCCEEEccCCcCcCCch-hhh-hCCCCCCeEecccCcCCc--cCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCC
Q 036117          390 KLEYLYLFDNKFSGPIP-QQI-GNLTNLFDLQLANNFFNG--SIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFG  465 (641)
Q Consensus       390 ~L~~L~L~~n~l~~~~~-~~~-~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~  465 (641)
                      .++.+.+.++.+..... ..| ..++.++.+||.+|.+++  .+...+.++|.|+.|+++.|++...+-..-....    
T Consensus        46 a~ellvln~~~id~~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~----  121 (418)
T KOG2982|consen   46 ALELLVLNGSIIDNEGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLK----  121 (418)
T ss_pred             chhhheecCCCCCcchhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCccccc----
Confidence            44455555555543321 112 245677788888887763  3455667788888888888877633221101112    


Q ss_pred             CCCccEEEccCCccc
Q 036117          466 PRFLRNVSFSYNNFS  480 (641)
Q Consensus       466 ~~~L~~L~ls~n~l~  480 (641)
                        +|+.|.+.+..+.
T Consensus       122 --nl~~lVLNgT~L~  134 (418)
T KOG2982|consen  122 --NLRVLVLNGTGLS  134 (418)
T ss_pred             --ceEEEEEcCCCCC
Confidence              5666666665553

>PF08263 LRRNT_2: Leucine rich repeat N-terminal domain; InterPro: IPR013210 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=98.32  E-value=9e-07  Score=58.66  Aligned_cols=40  Identities=38%  Similarity=0.938  Sum_probs=28.1

Q ss_pred             cHHHHHHHHHHHhcCCCCC---CCCCCCCCCCCCCccccceeeC
Q 036117           20 AQKEAKALLNWKSSLVSSS---LPSWTAINSNSGPCNWNGIQCN   60 (641)
Q Consensus        20 ~~~~~~~l~~~~~~~~~~~---~~~W~~~~~~~~~c~~~gv~c~   60 (641)
                      +++|++||++||+++..++   +.+|.... +.+||.|.||.|+
T Consensus         1 ~~~d~~aLl~~k~~l~~~~~~~l~~W~~~~-~~~~C~W~GV~Cd   43 (43)
T PF08263_consen    1 PNQDRQALLAFKKSLNNDPSGVLSSWNPSS-DSDPCSWSGVTCD   43 (43)
T ss_dssp             -HHHHHHHHHHHHCTT-SC-CCCTT--TT---S-CCCSTTEEE-
T ss_pred             CcHHHHHHHHHHHhcccccCcccccCCCcC-CCCCeeeccEEeC
Confidence            3689999999999998533   88998752 2589999999995

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. This domain is often found at the N terminus of tandem leucine rich repeats.; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1OGQ_A.

>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]

Probab=98.20  E-value=3.9e-07  Score=83.52  Aligned_cols=231  Identities=21%  Similarity=0.184  Sum_probs=154.9

Q ss_pred             CCEEEEEcCCCCCccccC---CcCCCCCCCCCEEECCCCC---CCccCc-------hhccCCCCCCEEECCCCcCCCCCc
Q 036117           63 GSISEINLANSGLDGTLD---GFDFSAFPNLTALNLNMNN---LVGSIP-------AGIGNATKLILLDLSSNNLTNPIP  129 (641)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~---~~~~~~l~~L~~L~L~~n~---~~~~~~-------~~l~~l~~L~~L~L~~n~l~~~~p  129 (641)
                      ..++.++||+|.|.....   ...+++-++|+..+++.--   ..+.++       .++..|++|+..+||.|.+....|
T Consensus        30 d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDNAfg~~~~  109 (388)
T COG5238          30 DELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDNAFGSEFP  109 (388)
T ss_pred             cceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeeccccccCcccc
Confidence            567899999998865432   1456677888888887642   222333       345789999999999999887766


Q ss_pred             ccc----CCCCCCCEEEcccccCCCC----CC---------hhccCCCCCcEEEeccccCCCCCCcc----cCCCCCCCE
Q 036117          130 PEI----GYLSDLRVLLLYNNSLTGQ----IP---------HQLSNLQNAWLLRIGANYLEDPDPVK----FKGMASLTD  188 (641)
Q Consensus       130 ~~l----~~l~~L~~L~l~~n~~~~~----~~---------~~l~~l~~L~~L~l~~n~~~~~~~~~----l~~l~~L~~  188 (641)
                      ..+    +.-+.|++|.+++|.+.-.    +.         ....+-+.|+++.++.|++.......    +..-..|++
T Consensus       110 e~L~d~is~~t~l~HL~l~NnGlGp~aG~rigkal~~la~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh~~lk~  189 (388)
T COG5238         110 EELGDLISSSTDLVHLKLNNNGLGPIAGGRIGKALFHLAYNKKAADKPKLEVVICGRNRLENGSKELSAALLESHENLKE  189 (388)
T ss_pred             hHHHHHHhcCCCceeEEeecCCCCccchhHHHHHHHHHHHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhhcCcee
Confidence            554    5668899999999876421    11         12345678999999999987664432    333368999


Q ss_pred             EEcCCCCCCC--C----chhhcCCCCCcEEEeeCCcCCCCCC---hhhhcCCCCCcEEeccCCcccccCCccc------C
Q 036117          189 LWLDYNLLEK--F----PSFIAECSKLMFLDLSDNLIMGHIP---IEQLTHLENLEYLNLTKNSFEGEIPREI------K  253 (641)
Q Consensus       189 L~l~~~~~~~--l----~~~l~~~~~L~~L~l~~~~~~~~~~---~~~l~~l~~L~~L~l~~n~~~~~~~~~l------~  253 (641)
                      +.+..|.|..  +    -..+..+++|+.||+.+|.++-...   ...+...+.|++|.+..|-++......+      .
T Consensus       190 vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~  269 (388)
T COG5238         190 VKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEK  269 (388)
T ss_pred             EEeeecCcCcchhHHHHHHHHHHhCcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhh
Confidence            9999998832  1    2256778999999999998873221   2334667889999999987664433322      2


Q ss_pred             CCCCCCEEEcCCCcCCccCCccc-------CCCCcccEeeeeccccc
Q 036117          254 TFPKLRHLKLGQNKLTGTIPDEI-------GLLSNLEILEFHENLFH  293 (641)
Q Consensus       254 ~l~~L~~L~L~~~~l~~~~~~~l-------~~~~~L~~L~l~~n~~~  293 (641)
                      ..++|..|...+|...+.+...+       ..+|-|..+.+.+|.+.
T Consensus       270 ~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~~le~ngNr~~  316 (388)
T COG5238         270 FVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLVDLERNGNRIK  316 (388)
T ss_pred             cCCCccccccchhhhcCceeeeechhhhhhcccHHHHHHHHccCcch
Confidence            35778888888887665332211       23445555555555554

>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]

Probab=98.14  E-value=3.3e-08  Score=102.11  Aligned_cols=128  Identities=30%  Similarity=0.271  Sum_probs=100.2

Q ss_pred             CCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEeccccCCCCCCcccCCCCCCCEEEcC
Q 036117          113 KLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLD  192 (641)
Q Consensus       113 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~  192 (641)
                      .|.+.++++|.+. .+-.++.-++.|+.|||++|+++..  +.+..+++|++||+++|.+..++.....++. |..|.++
T Consensus       165 ~L~~a~fsyN~L~-~mD~SLqll~ale~LnLshNk~~~v--~~Lr~l~~LkhLDlsyN~L~~vp~l~~~gc~-L~~L~lr  240 (1096)
T KOG1859|consen  165 KLATASFSYNRLV-LMDESLQLLPALESLNLSHNKFTKV--DNLRRLPKLKHLDLSYNCLRHVPQLSMVGCK-LQLLNLR  240 (1096)
T ss_pred             hHhhhhcchhhHH-hHHHHHHHHHHhhhhccchhhhhhh--HHHHhcccccccccccchhccccccchhhhh-heeeeec
Confidence            3556667777766 3445566678889999999988754  3788899999999999988877766666666 8999999


Q ss_pred             CCCCCCCchhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCccc
Q 036117          193 YNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFE  245 (641)
Q Consensus       193 ~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~  245 (641)
                      +|.++++- .+.++.+|+.||+++|-+.+.-....+..+..|+.|+|.+|.+-
T Consensus       241 nN~l~tL~-gie~LksL~~LDlsyNll~~hseL~pLwsLs~L~~L~LeGNPl~  292 (1096)
T KOG1859|consen  241 NNALTTLR-GIENLKSLYGLDLSYNLLSEHSELEPLWSLSSLIVLWLEGNPLC  292 (1096)
T ss_pred             ccHHHhhh-hHHhhhhhhccchhHhhhhcchhhhHHHHHHHHHHHhhcCCccc
Confidence            99887764 37888899999999998887666666677888889999988764

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.93  E-value=2.3e-07  Score=90.25  Aligned_cols=36  Identities=19%  Similarity=0.201  Sum_probs=17.8

Q ss_pred             CCCCCEEEccCcccc-ccCchhhhcCCCCCeEeCCcc
Q 036117          327 CANLTFLELSINNLT-GSLPLSLASLRQISELGISNN  362 (641)
Q Consensus       327 ~~~L~~L~l~~n~l~-~~~~~~l~~~~~L~~L~l~~n  362 (641)
                      ...++.+.++++... +..-..+..++.|+.+++-.+
T Consensus       400 ~~~l~~lEL~n~p~i~d~~Le~l~~c~~Leri~l~~~  436 (483)
T KOG4341|consen  400 LEGLEVLELDNCPLITDATLEHLSICRNLERIELIDC  436 (483)
T ss_pred             ccccceeeecCCCCchHHHHHHHhhCcccceeeeech
Confidence            345566666665443 223334445556665554443

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.92  E-value=3.9e-05  Score=76.93  Aligned_cols=136  Identities=18%  Similarity=0.198  Sum_probs=74.2

Q ss_pred             hhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCcccc
Q 036117          409 IGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGIC  488 (641)
Q Consensus       409 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~  488 (641)
                      +..+.+++.|++++|.++ .+|.   -.++|++|.+++|.--..+|..+.        ++|++|++++|.....+|.   
T Consensus        48 ~~~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--------~nLe~L~Ls~Cs~L~sLP~---  112 (426)
T PRK15386         48 IEEARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSIP--------EGLEKLTVCHCPEISGLPE---  112 (426)
T ss_pred             HHHhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchhh--------hhhhheEccCccccccccc---
Confidence            455788888999988776 4552   224688888888654445554332        2688888887732224443   


Q ss_pred             CCCCCceEeccCCccc--CCCccccccCCCCcEEECCCCcCc-c-ccCcccCCCCCCcEEeCCCCcccccCChhhhcCCC
Q 036117          489 RGGNLIYLTANVNKLV--GPIPESLWNCTGLTRVRLEQNRLD-G-DITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTN  564 (641)
Q Consensus       489 ~~~~L~~L~l~~n~~~--~~~~~~l~~~~~L~~L~l~~n~l~-~-~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~  564 (641)
                         .|+.|++..+...  +.+|      ++|+.|.+.+++.. . .++.  .-.++|++|++++|... ..|..+.  .+
T Consensus       113 ---sLe~L~L~~n~~~~L~~LP------ssLk~L~I~~~n~~~~~~lp~--~LPsSLk~L~Is~c~~i-~LP~~LP--~S  178 (426)
T PRK15386        113 ---SVRSLEIKGSATDSIKNVP------NGLTSLSINSYNPENQARIDN--LISPSLKTLSLTGCSNI-ILPEKLP--ES  178 (426)
T ss_pred             ---ccceEEeCCCCCcccccCc------chHhheecccccccccccccc--ccCCcccEEEecCCCcc-cCccccc--cc
Confidence               4566666544332  2233      23556665432211 0 0111  11256777777776644 2333332  46


Q ss_pred             CCEEeCcCC
Q 036117          565 LSNFRISGN  573 (641)
Q Consensus       565 L~~L~L~~n  573 (641)
                      |+.|+++.+
T Consensus       179 Lk~L~ls~n  187 (426)
T PRK15386        179 LQSITLHIE  187 (426)
T ss_pred             CcEEEeccc
Confidence            666766655

>PRK15386 type III secretion protein GogB; Provisional

Probab=97.91  E-value=4.9e-05  Score=76.24  Aligned_cols=135  Identities=20%  Similarity=0.199  Sum_probs=74.4

Q ss_pred             CCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCC
Q 036117          387 LLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGP  466 (641)
Q Consensus       387 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~  466 (641)
                      .+.+++.|++++|.++ .+|.   -..+|+.|.+++|.-...+|+.+  .++|++|++++|.....+|.           
T Consensus        50 ~~~~l~~L~Is~c~L~-sLP~---LP~sLtsL~Lsnc~nLtsLP~~L--P~nLe~L~Ls~Cs~L~sLP~-----------  112 (426)
T PRK15386         50 EARASGRLYIKDCDIE-SLPV---LPNELTEITIENCNNLTTLPGSI--PEGLEKLTVCHCPEISGLPE-----------  112 (426)
T ss_pred             HhcCCCEEEeCCCCCc-ccCC---CCCCCcEEEccCCCCcccCCchh--hhhhhheEccCccccccccc-----------
Confidence            3567788888887766 3341   12467888887765433555443  25778888887732223432           


Q ss_pred             CCccEEEccCCccc--ccCCccccCCCCCceEeccCCccc--CCCccccccCCCCcEEECCCCcCccccCcccCCCCCCc
Q 036117          467 RFLRNVSFSYNNFS--GKLPPGICRGGNLIYLTANVNKLV--GPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQ  542 (641)
Q Consensus       467 ~~L~~L~ls~n~l~--~~~~~~~~~~~~L~~L~l~~n~~~--~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~  542 (641)
                       +|+.|+++++...  +.+|.      +|+.|.+.+++..  ..+|..+  .++|++|++++|... ..|..+.  .+|+
T Consensus       113 -sLe~L~L~~n~~~~L~~LPs------sLk~L~I~~~n~~~~~~lp~~L--PsSLk~L~Is~c~~i-~LP~~LP--~SLk  180 (426)
T PRK15386        113 -SVRSLEIKGSATDSIKNVPN------GLTSLSINSYNPENQARIDNLI--SPSLKTLSLTGCSNI-ILPEKLP--ESLQ  180 (426)
T ss_pred             -ccceEEeCCCCCcccccCcc------hHhheecccccccccccccccc--CCcccEEEecCCCcc-cCccccc--ccCc
Confidence             5677777655432  12332      4556666433211  0111111  156788888777654 2333222  5778


Q ss_pred             EEeCCCCc
Q 036117          543 YIDLGDNQ  550 (641)
Q Consensus       543 ~L~Ls~n~  550 (641)
                      .|+++.+.
T Consensus       181 ~L~ls~n~  188 (426)
T PRK15386        181 SITLHIEQ  188 (426)
T ss_pred             EEEecccc
Confidence            88877663

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.91  E-value=3.2e-06  Score=92.00  Aligned_cols=150  Identities=22%  Similarity=0.301  Sum_probs=79.1

Q ss_pred             CCCCEEECCCCcC-CCCCccccC-CCCCCCEEEcccccCCCC-CChhccCCCCCcEEEeccccCCCCCCcccCCCCCCCE
Q 036117          112 TKLILLDLSSNNL-TNPIPPEIG-YLSDLRVLLLYNNSLTGQ-IPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTD  188 (641)
Q Consensus       112 ~~L~~L~L~~n~l-~~~~p~~l~-~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~  188 (641)
                      .+|++||+++... ...-|..++ .+|.|+.|.+++-.+... ......++++|..||+++.+++..  ..++.+++|++
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl--~GIS~LknLq~  199 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL--SGISRLKNLQV  199 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc--HHHhccccHHH
Confidence            4566666666432 222333343 356666666665444321 122334566666666666666544  34555666666


Q ss_pred             EEcCCCCCCCCc--hhhcCCCCCcEEEeeCCcCCCCC--Ch---hhhcCCCCCcEEeccCCcccccCCccc-CCCCCCCE
Q 036117          189 LWLDYNLLEKFP--SFIAECSKLMFLDLSDNLIMGHI--PI---EQLTHLENLEYLNLTKNSFEGEIPREI-KTFPKLRH  260 (641)
Q Consensus       189 L~l~~~~~~~l~--~~l~~~~~L~~L~l~~~~~~~~~--~~---~~l~~l~~L~~L~l~~n~~~~~~~~~l-~~l~~L~~  260 (641)
                      |.+.+-.+..-.  ..+.++++|+.||+|........  ..   +.-..+|+|+.||++++.+.....+.+ ...++|+.
T Consensus       200 L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~~~le~ll~sH~~L~~  279 (699)
T KOG3665|consen  200 LSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINEEILEELLNSHPNLQQ  279 (699)
T ss_pred             HhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhHHHHHHHHHhCccHhh
Confidence            666665553322  24666777777777765543211  00   111346788888888777665433332 23445554


Q ss_pred             EEc
Q 036117          261 LKL  263 (641)
Q Consensus       261 L~L  263 (641)
                      +..
T Consensus       280 i~~  282 (699)
T KOG3665|consen  280 IAA  282 (699)
T ss_pred             hhh
Confidence            443

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.85  E-value=3.2e-05  Score=68.19  Aligned_cols=105  Identities=24%  Similarity=0.204  Sum_probs=57.2

Q ss_pred             CCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEeccccCCCCC-CcccCCCCCCCEEE
Q 036117          112 TKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPD-PVKFKGMASLTDLW  190 (641)
Q Consensus       112 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~  190 (641)
                      .+...+||++|.+...  ..|..++.|.+|.+.+|+|+.+-|.--..+++|.+|.+.+|.+.... ...+..+++|++|.
T Consensus        42 d~~d~iDLtdNdl~~l--~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Lt  119 (233)
T KOG1644|consen   42 DQFDAIDLTDNDLRKL--DNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLT  119 (233)
T ss_pred             cccceecccccchhhc--ccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceee
Confidence            3455666666665421  23556666666666666666555544445556666666666554432 23355556666666


Q ss_pred             cCCCCCCCCch----hhcCCCCCcEEEeeCCc
Q 036117          191 LDYNLLEKFPS----FIAECSKLMFLDLSDNL  218 (641)
Q Consensus       191 l~~~~~~~l~~----~l~~~~~L~~L~l~~~~  218 (641)
                      +-+|++.....    .+..+++|+.||...-.
T Consensus       120 ll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt  151 (233)
T KOG1644|consen  120 LLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVT  151 (233)
T ss_pred             ecCCchhcccCceeEEEEecCcceEeehhhhh
Confidence            66665533321    34455556666555443

>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]

Probab=97.83  E-value=1.1e-06  Score=72.03  Aligned_cols=64  Identities=30%  Similarity=0.352  Sum_probs=38.2

Q ss_pred             CCcEEEeccccCCCCCCcccCCCCCCCEEEcCCCCCCCCchhhcCCCCCcEEEeeCCcCCCCCChh
Q 036117          161 NAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIE  226 (641)
Q Consensus       161 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~  226 (641)
                      .++++++++|.+++++.. +..++.|+.|+++.|++...|..+..+.++..|+..+|... .++..
T Consensus        78 t~t~lNl~~neisdvPeE-~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~-eid~d  141 (177)
T KOG4579|consen   78 TATTLNLANNEISDVPEE-LAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARA-EIDVD  141 (177)
T ss_pred             hhhhhhcchhhhhhchHH-HhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCccc-cCcHH
Confidence            444555555555444333 55566666666666666666666666777777777776665 55544

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.71  E-value=2.4e-05  Score=51.90  Aligned_cols=6  Identities=50%  Similarity=0.994  Sum_probs=2.1

Q ss_pred             EeCCCC
Q 036117          544 IDLGDN  549 (641)
Q Consensus       544 L~Ls~n  549 (641)
                      |++++|
T Consensus         6 L~l~~N   11 (44)
T PF12799_consen    6 LDLSNN   11 (44)
T ss_dssp             EEETSS
T ss_pred             EEccCC
Confidence            333333

...

>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B

Probab=97.64  E-value=4e-05  Score=50.82  Aligned_cols=36  Identities=36%  Similarity=0.678  Sum_probs=16.7

Q ss_pred             CCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCc
Q 036117          564 NLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLT  600 (641)
Q Consensus       564 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  600 (641)
                      +|++|++++|+++ .+|..++++++|+.|++++|+++
T Consensus         2 ~L~~L~l~~N~i~-~l~~~l~~l~~L~~L~l~~N~i~   37 (44)
T PF12799_consen    2 NLEELDLSNNQIT-DLPPELSNLPNLETLNLSNNPIS   37 (44)
T ss_dssp             T-SEEEETSSS-S-SHGGHGTTCTTSSEEEETSSCCS
T ss_pred             cceEEEccCCCCc-ccCchHhCCCCCCEEEecCCCCC
Confidence            3455555555554 33334455555555555555544

...

>KOG4341 consensus F-box protein containing LRR [General function prediction only]

Probab=97.62  E-value=2e-06  Score=83.88  Aligned_cols=294  Identities=21%  Similarity=0.154  Sum_probs=137.8

Q ss_pred             CCCEEECCCCCCCc--cCchhccCCCCCCEEECCCCc-CCCCCcccc-CCCCCCCEEEccccc-CCCCCCh-hccCCCCC
Q 036117           89 NLTALNLNMNNLVG--SIPAGIGNATKLILLDLSSNN-LTNPIPPEI-GYLSDLRVLLLYNNS-LTGQIPH-QLSNLQNA  162 (641)
Q Consensus        89 ~L~~L~L~~n~~~~--~~~~~l~~l~~L~~L~L~~n~-l~~~~p~~l-~~l~~L~~L~l~~n~-~~~~~~~-~l~~l~~L  162 (641)
                      .|+.|.++++.=.+  .+-....+++++++|++.++. +++..-..+ ..+++|+++++..|. ++...-. ....+++|
T Consensus       139 ~lk~LSlrG~r~v~~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL  218 (483)
T KOG4341|consen  139 FLKELSLRGCRAVGDSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKL  218 (483)
T ss_pred             ccccccccccccCCcchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhH
Confidence            46667776664322  122334567777777777664 222211122 356677777776642 3322111 22345556


Q ss_pred             cEEEecccc-CCCCCCcccCCCCCCCEEEcCCCCCCCCchhhcCCCCCcEEEeeCCcCCCCCChhhh----cCCCCCcEE
Q 036117          163 WLLRIGANY-LEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQL----THLENLEYL  237 (641)
Q Consensus       163 ~~L~l~~n~-~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~l----~~l~~L~~L  237 (641)
                      .+++++.+. +++.                      .+.....+++.++.+.+.+|.-.   +...+    ..+..+.++
T Consensus       219 ~~lNlSwc~qi~~~----------------------gv~~~~rG~~~l~~~~~kGC~e~---~le~l~~~~~~~~~i~~l  273 (483)
T KOG4341|consen  219 KYLNLSWCPQISGN----------------------GVQALQRGCKELEKLSLKGCLEL---ELEALLKAAAYCLEILKL  273 (483)
T ss_pred             HHhhhccCchhhcC----------------------cchHHhccchhhhhhhhcccccc---cHHHHHHHhccChHhhcc
Confidence            666655543 2221                      11222233333333333333211   11111    222334444


Q ss_pred             eccCCc-ccccC-CcccCCCCCCCEEEcCCCcCCccCC-ccc-CCCCcccEeeeecccc-cccCcccc-CCCCCCCeeec
Q 036117          238 NLTKNS-FEGEI-PREIKTFPKLRHLKLGQNKLTGTIP-DEI-GLLSNLEILEFHENLF-HGLIPSSL-GNLRRLQRLNL  311 (641)
Q Consensus       238 ~l~~n~-~~~~~-~~~l~~l~~L~~L~L~~~~l~~~~~-~~l-~~~~~L~~L~l~~n~~-~~~~~~~l-~~l~~L~~L~l  311 (641)
                      ++..+. +++.. ...-..+..|+.+..+++...+..+ ..+ .+..+|+.+.++.++. +......+ .+.+.|+.+++
T Consensus       274 nl~~c~~lTD~~~~~i~~~c~~lq~l~~s~~t~~~d~~l~aLg~~~~~L~~l~l~~c~~fsd~~ft~l~rn~~~Le~l~~  353 (483)
T KOG4341|consen  274 NLQHCNQLTDEDLWLIACGCHALQVLCYSSCTDITDEVLWALGQHCHNLQVLELSGCQQFSDRGFTMLGRNCPHLERLDL  353 (483)
T ss_pred             chhhhccccchHHHHHhhhhhHhhhhcccCCCCCchHHHHHHhcCCCceEEEeccccchhhhhhhhhhhcCChhhhhhcc
Confidence            443332 22111 0111234556666665554322111 111 3456666666666652 22222222 24567777777


Q ss_pred             cCccCC--CCCCcCCCCCCCCCEEEccCccccccC-----chhhhcCCCCCeEeCCcccccccceeecccccccccCCcC
Q 036117          312 KSAGLN--SSIPKELGFCANLTFLELSINNLTGSL-----PLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPE  384 (641)
Q Consensus       312 ~~~~~~--~~~~~~l~~~~~L~~L~l~~n~l~~~~-----~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~  384 (641)
                      ..+...  +.+...-.+++.|+++.+++|..-...     ...-..+..++.+.+++++...-            ..-..
T Consensus       354 e~~~~~~d~tL~sls~~C~~lr~lslshce~itD~gi~~l~~~~c~~~~l~~lEL~n~p~i~d------------~~Le~  421 (483)
T KOG4341|consen  354 EECGLITDGTLASLSRNCPRLRVLSLSHCELITDEGIRHLSSSSCSLEGLEVLELDNCPLITD------------ATLEH  421 (483)
T ss_pred             cccceehhhhHhhhccCCchhccCChhhhhhhhhhhhhhhhhccccccccceeeecCCCCchH------------HHHHH
Confidence            776542  223333457788888888887543221     11123456777777777765422            12234


Q ss_pred             CCCCCCCCEEEccCCc-CcCCchhhh-hCCCCCCeEe
Q 036117          385 IGLLPKLEYLYLFDNK-FSGPIPQQI-GNLTNLFDLQ  419 (641)
Q Consensus       385 l~~~~~L~~L~L~~n~-l~~~~~~~~-~~l~~L~~L~  419 (641)
                      +..+++|+.+++-+++ ++......| ..+|++++.-
T Consensus       422 l~~c~~Leri~l~~~q~vtk~~i~~~~~~lp~i~v~a  458 (483)
T KOG4341|consen  422 LSICRNLERIELIDCQDVTKEAISRFATHLPNIKVHA  458 (483)
T ss_pred             HhhCcccceeeeechhhhhhhhhHHHHhhCccceehh
Confidence            5567888888888874 332222222 3455555443

>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]

Probab=97.57  E-value=5.2e-05  Score=82.76  Aligned_cols=134  Identities=16%  Similarity=0.223  Sum_probs=76.3

Q ss_pred             CCCCEEEcccccC-CCCCChhcc-CCCCCcEEEeccccCCCCC-CcccCCCCCCCEEEcCCCCCCCCchhhcCCCCCcEE
Q 036117          136 SDLRVLLLYNNSL-TGQIPHQLS-NLQNAWLLRIGANYLEDPD-PVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFL  212 (641)
Q Consensus       136 ~~L~~L~l~~n~~-~~~~~~~l~-~l~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~~~~~~l~~~l~~~~~L~~L  212 (641)
                      .+|++|++++... ....|..++ .+|.|++|.+.+-.+.... .....++++|+.|+++++++..+ .+++++++|+.|
T Consensus       122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknLq~L  200 (699)
T KOG3665|consen  122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNLQVL  200 (699)
T ss_pred             HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccHHHH
Confidence            5678888877542 223333333 4677777777765544332 23345667777777777777666 556777777777


Q ss_pred             EeeCCcCCCCCChhhhcCCCCCcEEeccCCcccccC--C----cccCCCCCCCEEEcCCCcCCc
Q 036117          213 DLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEI--P----REIKTFPKLRHLKLGQNKLTG  270 (641)
Q Consensus       213 ~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~--~----~~l~~l~~L~~L~L~~~~l~~  270 (641)
                      .+.+-.+...-....+.++++|+.||+|........  .    +.-..+|+|+.||.+++.+.+
T Consensus       201 ~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~  264 (699)
T KOG3665|consen  201 SMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE  264 (699)
T ss_pred             hccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence            776666553333334456677777777665433111  0    111235566666666555543

>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]

Probab=97.56  E-value=0.00012  Score=64.81  Aligned_cols=103  Identities=19%  Similarity=0.226  Sum_probs=68.5

Q ss_pred             CCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccC-CccccCCCCCCEEeC
Q 036117          516 GLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGI-PAELGNLTYLQNLDI  594 (641)
Q Consensus       516 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~L  594 (641)
                      +...+++++|.+..  ...|..++.|.+|.+++|+|+.+.|.--.-++.|+.|.|.+|++.... -..+..++.|++|.+
T Consensus        43 ~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~pLa~~p~L~~Ltl  120 (233)
T KOG1644|consen   43 QFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDPLASCPKLEYLTL  120 (233)
T ss_pred             ccceecccccchhh--cccCCCccccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcchhccCCccceeee
Confidence            45677888887752  234566788888888888888776655555677888888888774221 133567778888888


Q ss_pred             CCCcCcccC---CccccCCCCCCEEeCcC
Q 036117          595 FDNQLTGKI---PAQLFRSSFLIRLNLRR  620 (641)
Q Consensus       595 ~~n~l~~~i---p~~l~~~~~L~~l~l~~  620 (641)
                      -+|+....-   ---+..+++|+.||...
T Consensus       121 l~Npv~~k~~YR~yvl~klp~l~~LDF~k  149 (233)
T KOG1644|consen  121 LGNPVEHKKNYRLYVLYKLPSLRTLDFQK  149 (233)
T ss_pred             cCCchhcccCceeEEEEecCcceEeehhh
Confidence            888776331   12244667777777654

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.23  E-value=0.00079  Score=57.51  Aligned_cols=84  Identities=19%  Similarity=0.154  Sum_probs=31.0

Q ss_pred             cCCCCCCCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCC
Q 036117           82 FDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQN  161 (641)
Q Consensus        82 ~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~  161 (641)
                      ..|.++++|+.+.+.. .+...-..+|..+++|+.+++..+ +...-...|.++++++.+.+.. .+.......|..+++
T Consensus         6 ~~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~   82 (129)
T PF13306_consen    6 NAFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTN   82 (129)
T ss_dssp             TTTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TT
T ss_pred             HHHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-ccccccccccccccc
Confidence            3455555555555543 233233344555555555555443 3322223344444455555543 222222233444444


Q ss_pred             CcEEEec
Q 036117          162 AWLLRIG  168 (641)
Q Consensus       162 L~~L~l~  168 (641)
                      |+.+.+.
T Consensus        83 l~~i~~~   89 (129)
T PF13306_consen   83 LKNIDIP   89 (129)
T ss_dssp             ECEEEET
T ss_pred             ccccccC
Confidence            4444443

>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A

Probab=97.16  E-value=0.001  Score=56.78  Aligned_cols=99  Identities=20%  Similarity=0.270  Sum_probs=33.2

Q ss_pred             hhccCCCCCcEEEeccccCCCCCCcccCCCCCCCEEEcCCCCCCCCch-hhcCCCCCcEEEeeCCcCCCCCChhhhcCCC
Q 036117          154 HQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPS-FIAECSKLMFLDLSDNLIMGHIPIEQLTHLE  232 (641)
Q Consensus       154 ~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~-~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~  232 (641)
                      ..|.++++|+.+.+.++ +..+....|.++++++.+.+.. .+..++. .+..+++|+.+++..+ +. .++...|.++ 
T Consensus        29 ~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~i~~~~~-~~-~i~~~~f~~~-  103 (129)
T PF13306_consen   29 NAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKNIDIPSN-IT-EIGSSSFSNC-  103 (129)
T ss_dssp             TTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECEEEETTT--B-EEHTTTTTT--
T ss_pred             hhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccccccCcc-cc-EEchhhhcCC-
Confidence            33444444444444432 3333444444444455555433 2222222 2344555555555443 22 3333444554 


Q ss_pred             CCcEEeccCCcccccCCcccCCCCCC
Q 036117          233 NLEYLNLTKNSFEGEIPREIKTFPKL  258 (641)
Q Consensus       233 ~L~~L~l~~n~~~~~~~~~l~~l~~L  258 (641)
                      .++.+.+.. .+.......|.++++|
T Consensus       104 ~l~~i~~~~-~~~~i~~~~F~~~~~l  128 (129)
T PF13306_consen  104 NLKEINIPS-NITKIEENAFKNCTKL  128 (129)
T ss_dssp             T--EEE-TT-B-SS----GGG-----
T ss_pred             CceEEEECC-CccEECCccccccccC
Confidence            566666554 2222333445555444

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.99  E-value=0.00044  Score=64.01  Aligned_cols=109  Identities=25%  Similarity=0.264  Sum_probs=68.3

Q ss_pred             CccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCC--cccccCChhhhcCCCCCEEeCcCCcCccc-CCccc
Q 036117          507 IPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDN--QLSGVLTSNWGKCTNLSNFRISGNRIKGG-IPAEL  583 (641)
Q Consensus       507 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n--~~~~~~~~~~~~l~~L~~L~L~~n~l~~~-~p~~l  583 (641)
                      +.........|+.+++.+..++.  ...+..+|+|++|++|.|  .+.+..+.-...+++|++++++.|++... -...+
T Consensus        35 ~~gl~d~~~~le~ls~~n~gltt--~~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl  112 (260)
T KOG2739|consen   35 LGGLTDEFVELELLSVINVGLTT--LTNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPL  112 (260)
T ss_pred             cccccccccchhhhhhhccceee--cccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchh
Confidence            44444455666777777766652  234566788899999998  55555555556668889999999887631 11234


Q ss_pred             cCCCCCCEEeCCCCcCcccCC---ccccCCCCCCEEe
Q 036117          584 GNLTYLQNLDIFDNQLTGKIP---AQLFRSSFLIRLN  617 (641)
Q Consensus       584 ~~l~~L~~L~L~~n~l~~~ip---~~l~~~~~L~~l~  617 (641)
                      ..+.+|..|++.+|..++.--   .-+..+++|..+|
T Consensus       113 ~~l~nL~~Ldl~n~~~~~l~dyre~vf~ll~~L~~LD  149 (260)
T KOG2739|consen  113 KELENLKSLDLFNCSVTNLDDYREKVFLLLPSLKYLD  149 (260)
T ss_pred             hhhcchhhhhcccCCccccccHHHHHHHHhhhhcccc
Confidence            566777888888887765211   1122346666554

>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]

Probab=96.77  E-value=0.00083  Score=62.21  Aligned_cols=39  Identities=28%  Similarity=0.326  Sum_probs=16.1

Q ss_pred             CCCCCCEEECCCC--cCCCCCccccCCCCCCCEEEcccccC
Q 036117          110 NATKLILLDLSSN--NLTNPIPPEIGYLSDLRVLLLYNNSL  148 (641)
Q Consensus       110 ~l~~L~~L~L~~n--~l~~~~p~~l~~l~~L~~L~l~~n~~  148 (641)
                      .+++|++|.++.|  .+.+.++.....+++|+++++++|++
T Consensus        63 ~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki  103 (260)
T KOG2739|consen   63 KLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKI  103 (260)
T ss_pred             CcchhhhhcccCCcccccccceehhhhCCceeEEeecCCcc
Confidence            3444444444444  23322222223334444444444443

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.70  E-value=6.7e-05  Score=69.45  Aligned_cols=101  Identities=28%  Similarity=0.355  Sum_probs=70.5

Q ss_pred             CCCCCeeeccCccCCCCCCcCCCCCCCCCEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCC
Q 036117          303 LRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLP  382 (641)
Q Consensus       303 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~  382 (641)
                      +.+.++|+..+|.+...  .....++.|++|.++-|+++..-|  +..|+.|++|+|..|.|..+.+|            
T Consensus        18 l~~vkKLNcwg~~L~DI--sic~kMp~lEVLsLSvNkIssL~p--l~rCtrLkElYLRkN~I~sldEL------------   81 (388)
T KOG2123|consen   18 LENVKKLNCWGCGLDDI--SICEKMPLLEVLSLSVNKISSLAP--LQRCTRLKELYLRKNCIESLDEL------------   81 (388)
T ss_pred             HHHhhhhcccCCCccHH--HHHHhcccceeEEeeccccccchh--HHHHHHHHHHHHHhcccccHHHH------------
Confidence            44567788888877554  234567888888888888885443  56788888888888887765432            


Q ss_pred             cCCCCCCCCCEEEccCCcCcCCchh-----hhhCCCCCCeEe
Q 036117          383 PEIGLLPKLEYLYLFDNKFSGPIPQ-----QIGNLTNLFDLQ  419 (641)
Q Consensus       383 ~~l~~~~~L~~L~L~~n~l~~~~~~-----~~~~l~~L~~L~  419 (641)
                      ..+.++|+|+.|.|..|...+..+.     .+..+|+|++||
T Consensus        82 ~YLknlpsLr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD  123 (388)
T KOG2123|consen   82 EYLKNLPSLRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD  123 (388)
T ss_pred             HHHhcCchhhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence            2355678888888888876665443     245677777776

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.55  E-value=0.00033  Score=75.23  Aligned_cols=110  Identities=20%  Similarity=0.132  Sum_probs=52.7

Q ss_pred             CCCCCEEEcCCCCC-CC--CchhhcCCCCCcEEEeeCC-cCCCCC---ChhhhcCCCCCcEEeccCCc-ccccCCcccC-
Q 036117          183 MASLTDLWLDYNLL-EK--FPSFIAECSKLMFLDLSDN-LIMGHI---PIEQLTHLENLEYLNLTKNS-FEGEIPREIK-  253 (641)
Q Consensus       183 l~~L~~L~l~~~~~-~~--l~~~l~~~~~L~~L~l~~~-~~~~~~---~~~~l~~l~~L~~L~l~~n~-~~~~~~~~l~-  253 (641)
                      ++.|+.+.+.++.- ..  +-.....++.|+.|+++++ ......   .......+++|+.++++++. +++..-..+. 
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            45555555555532 22  3344555666666666652 111111   11223445666666666665 4433222332 


Q ss_pred             CCCCCCEEEcCCCc-CCccCCc-ccCCCCcccEeeeecccc
Q 036117          254 TFPKLRHLKLGQNK-LTGTIPD-EIGLLSNLEILEFHENLF  292 (641)
Q Consensus       254 ~l~~L~~L~L~~~~-l~~~~~~-~l~~~~~L~~L~l~~n~~  292 (641)
                      .+++|++|.+.+|. +++.... ....++.|++|+++++..
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~  307 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHG  307 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCcc
Confidence            25666666665554 3322111 123455666666666554

>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]

Probab=96.44  E-value=0.00031  Score=75.38  Aligned_cols=186  Identities=24%  Similarity=0.171  Sum_probs=81.8

Q ss_pred             CCCCcEEEecccc-CCCC-CCcccCCCCCCCEEEcCCC-CC-CC----CchhhcCCCCCcEEEeeCCcCCCCCChhhh-c
Q 036117          159 LQNAWLLRIGANY-LEDP-DPVKFKGMASLTDLWLDYN-LL-EK----FPSFIAECSKLMFLDLSDNLIMGHIPIEQL-T  229 (641)
Q Consensus       159 l~~L~~L~l~~n~-~~~~-~~~~l~~l~~L~~L~l~~~-~~-~~----l~~~l~~~~~L~~L~l~~~~~~~~~~~~~l-~  229 (641)
                      ++.|+.+.+.++. +... .......+++|+.|+++++ .. ..    .......+++|+.|+++.+....+.....+ .
T Consensus       187 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l~~  266 (482)
T KOG1947|consen  187 CPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSALAS  266 (482)
T ss_pred             CchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHHHh
Confidence            4445555554443 1111 1223344555555555542 11 11    112344456666666666662222222222 2


Q ss_pred             CCCCCcEEeccCCc-ccccC-CcccCCCCCCCEEEcCCCcCCcc--CCcccCCCCcccEeeeecccccccCccccCCCCC
Q 036117          230 HLENLEYLNLTKNS-FEGEI-PREIKTFPKLRHLKLGQNKLTGT--IPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRR  305 (641)
Q Consensus       230 ~l~~L~~L~l~~n~-~~~~~-~~~l~~l~~L~~L~L~~~~l~~~--~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~  305 (641)
                      .+++|++|.+.++. +++.. ......++.|++|++++|.....  +......+++++.+.+....          .++.
T Consensus       267 ~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l~~l~~~~~~----------~c~~  336 (482)
T KOG1947|consen  267 RCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNLRELKLLSLN----------GCPS  336 (482)
T ss_pred             hCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcchhhhhhhhcC----------CCcc
Confidence            36667777666555 33221 12234566677777776654311  11112334555544332221          1333


Q ss_pred             CCeeeccCccCC---CCCCcCCCCCCCCCEEEccCccccccC-chhhhcCCCC
Q 036117          306 LQRLNLKSAGLN---SSIPKELGFCANLTFLELSINNLTGSL-PLSLASLRQI  354 (641)
Q Consensus       306 L~~L~l~~~~~~---~~~~~~l~~~~~L~~L~l~~n~l~~~~-~~~l~~~~~L  354 (641)
                      ++.+.+......   .........++.++.+.+..+...... ...+..|+.+
T Consensus       337 l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~l~gc~~l  389 (482)
T KOG1947|consen  337 LTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELSLRGCPNL  389 (482)
T ss_pred             HHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHHhcCCccc
Confidence            444443332221   112223456677777777776633222 2344455555

>KOG2123 consensus Uncharacterized conserved protein [Function unknown]

Probab=96.27  E-value=0.00011  Score=68.13  Aligned_cols=86  Identities=26%  Similarity=0.336  Sum_probs=40.9

Q ss_pred             eCCCCCEEEEEcCCCCCccccCCcCCCCCCCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCC-CccccCCCCC
Q 036117           59 CNEVGSISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNP-IPPEIGYLSD  137 (641)
Q Consensus        59 c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~-~p~~l~~l~~  137 (641)
                      |++...|..|++.++++.+.   ....+|+.|++|.|+-|+|+..  ..+..|++|++|.|+.|.|.+. -...+.++++
T Consensus        15 ~sdl~~vkKLNcwg~~L~DI---sic~kMp~lEVLsLSvNkIssL--~pl~rCtrLkElYLRkN~I~sldEL~YLknlps   89 (388)
T KOG2123|consen   15 CSDLENVKKLNCWGCGLDDI---SICEKMPLLEVLSLSVNKISSL--APLQRCTRLKELYLRKNCIESLDELEYLKNLPS   89 (388)
T ss_pred             hhHHHHhhhhcccCCCccHH---HHHHhcccceeEEeeccccccc--hhHHHHHHHHHHHHHhcccccHHHHHHHhcCch
Confidence            33334455555555555422   2234555556666655555422  2245555555555555555422 0112344555


Q ss_pred             CCEEEcccccCC
Q 036117          138 LRVLLLYNNSLT  149 (641)
Q Consensus       138 L~~L~l~~n~~~  149 (641)
                      |++|.|..|.-.
T Consensus        90 Lr~LWL~ENPCc  101 (388)
T KOG2123|consen   90 LRTLWLDENPCC  101 (388)
T ss_pred             hhhHhhccCCcc
Confidence            555555554433

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=95.32  E-value=0.0056  Score=33.60  Aligned_cols=17  Identities=47%  Similarity=0.728  Sum_probs=8.0

Q ss_pred             CCEEeCCCCcCcccCCcc
Q 036117          589 LQNLDIFDNQLTGKIPAQ  606 (641)
Q Consensus       589 L~~L~L~~n~l~~~ip~~  606 (641)
                      |++|||++|+++ .+|.+
T Consensus         2 L~~Ldls~n~l~-~ip~~   18 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSS   18 (22)
T ss_dssp             ESEEEETSSEES-EEGTT
T ss_pred             ccEEECCCCcCE-eCChh
Confidence            444555555444 44443

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []

Probab=94.77  E-value=0.01  Score=32.50  Aligned_cols=20  Identities=35%  Similarity=0.562  Sum_probs=11.9

Q ss_pred             CCEEeCcCCCCcccCcccccC
Q 036117          613 LIRLNLRRNQLSDKIPAEIGK  633 (641)
Q Consensus       613 L~~l~l~~n~l~~~~p~~~~~  633 (641)
                      |++||+++|+++ .+|..|++
T Consensus         2 L~~Ldls~n~l~-~ip~~~~~   21 (22)
T PF00560_consen    2 LEYLDLSGNNLT-SIPSSFSN   21 (22)
T ss_dssp             ESEEEETSSEES-EEGTTTTT
T ss_pred             ccEEECCCCcCE-eCChhhcC
Confidence            556666666666 56655544

LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=94.19  E-value=0.00027  Score=73.85  Aligned_cols=88  Identities=22%  Similarity=0.223  Sum_probs=43.1

Q ss_pred             CCCCcEEECCCCcCcccc----CcccCCCCC-CcEEeCCCCcccccCC----hhhhcC-CCCCEEeCcCCcCcccCC---
Q 036117          514 CTGLTRVRLEQNRLDGDI----TNALGIYPD-LQYIDLGDNQLSGVLT----SNWGKC-TNLSNFRISGNRIKGGIP---  580 (641)
Q Consensus       514 ~~~L~~L~l~~n~l~~~~----~~~~~~l~~-L~~L~Ls~n~~~~~~~----~~~~~l-~~L~~L~L~~n~l~~~~p---  580 (641)
                      ..+++.|++.+|.++...    ...+...+. +..|++.+|.+.+...    ..+..+ ..++.++++.|+++..-.   
T Consensus       203 ~~~le~L~L~~~~~t~~~c~~l~~~l~~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L  282 (478)
T KOG4308|consen  203 LSSLETLKLSRCGVTSSSCALLDEVLASGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDL  282 (478)
T ss_pred             cccHHHHhhhhcCcChHHHHHHHHHHhccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHH
Confidence            445566666666554221    122233333 5556666666553311    222233 445666666666654322   


Q ss_pred             -ccccCCCCCCEEeCCCCcCcc
Q 036117          581 -AELGNLTYLQNLDIFDNQLTG  601 (641)
Q Consensus       581 -~~l~~l~~L~~L~L~~n~l~~  601 (641)
                       ..+..++.++++.+..|++..
T Consensus       283 ~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  283 AEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             HHHHhhhHHHHHhhcccCcccc
Confidence             333444566666666666543

>KOG4308 consensus LRR-containing protein [Function unknown]

Probab=92.45  E-value=0.00099  Score=69.73  Aligned_cols=186  Identities=24%  Similarity=0.192  Sum_probs=91.4

Q ss_pred             CCEEECCCCCCCcc----CchhccCCCCCCEEECCCCcCCCCCccc----cCCC-CCCCEEEcccccCCCC----CChhc
Q 036117           90 LTALNLNMNNLVGS----IPAGIGNATKLILLDLSSNNLTNPIPPE----IGYL-SDLRVLLLYNNSLTGQ----IPHQL  156 (641)
Q Consensus        90 L~~L~L~~n~~~~~----~~~~l~~l~~L~~L~L~~n~l~~~~p~~----l~~l-~~L~~L~l~~n~~~~~----~~~~l  156 (641)
                      +..+.|.+|.+.+.    +...+.....|..|++++|.+.+.-...    +... ..+++|++..|.++..    +.+.+
T Consensus        89 l~~L~L~~~~l~~~~~~~l~~~l~t~~~L~~L~l~~n~l~~~g~~~l~~~l~~~~~~l~~L~l~~c~l~~~g~~~l~~~L  168 (478)
T KOG4308|consen   89 LLHLSLANNRLGDRGAEELAQALKTLPTLGQLDLSGNNLGDEGARLLCEGLRLPQCLLQTLELVSCSLTSEGAAPLAAVL  168 (478)
T ss_pred             HHHhhhhhCccccchHHHHHHHhcccccHhHhhcccCCCccHhHHHHHhhcccchHHHHHHHhhcccccccchHHHHHHH
Confidence            66677777766543    2334556677777777777776432211    2222 4466666666666532    33444


Q ss_pred             cCCCCCcEEEeccccCCCCC----CcccCCCCCCCEEEcCCCCCCCCchhhcCCCCCcEEEeeCCcCCCCCC---hhhhc
Q 036117          157 SNLQNAWLLRIGANYLEDPD----PVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIP---IEQLT  229 (641)
Q Consensus       157 ~~l~~L~~L~l~~n~~~~~~----~~~l~~l~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~---~~~l~  229 (641)
                      .....++.++++.|.+....    ...+..                   .+....++++|.+++|.++...-   ...+.
T Consensus       169 ~~~~~l~~l~l~~n~l~~~g~~~l~~~l~~-------------------~~~~~~~le~L~L~~~~~t~~~c~~l~~~l~  229 (478)
T KOG4308|consen  169 EKNEHLTELDLSLNGLIELGLLVLSQALES-------------------AASPLSSLETLKLSRCGVTSSSCALLDEVLA  229 (478)
T ss_pred             hcccchhHHHHHhcccchhhhHHHhhhhhh-------------------hhcccccHHHHhhhhcCcChHHHHHHHHHHh
Confidence            45566666666666543110    011111                   11223344444444444431100   01112


Q ss_pred             CCCC-CcEEeccCCccccc----CCcccCCC-CCCCEEEcCCCcCCccCCc----ccCCCCcccEeeeecccccc
Q 036117          230 HLEN-LEYLNLTKNSFEGE----IPREIKTF-PKLRHLKLGQNKLTGTIPD----EIGLLSNLEILEFHENLFHG  294 (641)
Q Consensus       230 ~l~~-L~~L~l~~n~~~~~----~~~~l~~l-~~L~~L~L~~~~l~~~~~~----~l~~~~~L~~L~l~~n~~~~  294 (641)
                      ..+. +..+++..|.+.+.    ....+..+ ..+++++++.|.++.....    .+..++.++++.++.|.+..
T Consensus       230 ~~~~~~~el~l~~n~l~d~g~~~L~~~l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~  304 (478)
T KOG4308|consen  230 SGESLLRELDLASNKLGDVGVEKLLPCLSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTD  304 (478)
T ss_pred             ccchhhHHHHHHhcCcchHHHHHHHHHhcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCcccc
Confidence            2223 44455555554422    11223333 4566777777766643322    23455677777777776653

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=91.95  E-value=0.033  Score=49.80  Aligned_cols=83  Identities=18%  Similarity=0.162  Sum_probs=51.0

Q ss_pred             CceEeccCCcccCCCccccccCCCCcEEECCCCcCcccc-Cccc-CCCCCCcEEeCCCCc-ccccCChhhhcCCCCCEEe
Q 036117          493 LIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDI-TNAL-GIYPDLQYIDLGDNQ-LSGVLTSNWGKCTNLSNFR  569 (641)
Q Consensus       493 L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~-~~~~-~~l~~L~~L~Ls~n~-~~~~~~~~~~~l~~L~~L~  569 (641)
                      ++.++-+++.+..+--+.+..++.++.|.+.+|.--+.. -..+ +-.++|+.|+|++|+ |++.....+..+++|+.|.
T Consensus       103 IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L~  182 (221)
T KOG3864|consen  103 IEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRLH  182 (221)
T ss_pred             EEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHHH
Confidence            444555555555444444555666666666655432211 0111 235788999999885 8877777888888888888


Q ss_pred             CcCCcC
Q 036117          570 ISGNRI  575 (641)
Q Consensus       570 L~~n~l  575 (641)
                      +.+=+.
T Consensus       183 l~~l~~  188 (221)
T KOG3864|consen  183 LYDLPY  188 (221)
T ss_pred             hcCchh
Confidence            876543

>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D

Probab=91.40  E-value=0.11  Score=26.36  Aligned_cols=11  Identities=45%  Similarity=0.794  Sum_probs=3.6

Q ss_pred             CCEEeCCCCcC
Q 036117          589 LQNLDIFDNQL  599 (641)
Q Consensus       589 L~~L~L~~n~l  599 (641)
                      |+.|+|++|++
T Consensus         3 L~~L~l~~n~L   13 (17)
T PF13504_consen    3 LRTLDLSNNRL   13 (17)
T ss_dssp             -SEEEETSS--
T ss_pred             cCEEECCCCCC
Confidence            44444444443

...

>smart00370 LRR Leucine-rich repeats, outliers

Probab=88.84  E-value=0.37  Score=27.49  Aligned_cols=19  Identities=37%  Similarity=0.663  Sum_probs=10.5

Q ss_pred             CCCCEEeCCCCcCcccCCcc
Q 036117          587 TYLQNLDIFDNQLTGKIPAQ  606 (641)
Q Consensus       587 ~~L~~L~L~~n~l~~~ip~~  606 (641)
                      ++|+.|+|++|++. .+|.+
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~   20 (26)
T smart00370        2 PNLRELDLSNNQLS-SLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHH
Confidence            45566666666655 45543

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=88.84  E-value=0.37  Score=27.49  Aligned_cols=19  Identities=37%  Similarity=0.663  Sum_probs=10.5

Q ss_pred             CCCCEEeCCCCcCcccCCcc
Q 036117          587 TYLQNLDIFDNQLTGKIPAQ  606 (641)
Q Consensus       587 ~~L~~L~L~~n~l~~~ip~~  606 (641)
                      ++|+.|+|++|++. .+|.+
T Consensus         2 ~~L~~L~L~~N~l~-~lp~~   20 (26)
T smart00369        2 PNLRELDLSNNQLS-SLPPG   20 (26)
T ss_pred             CCCCEEECCCCcCC-cCCHH
Confidence            45566666666655 45543

>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A

Probab=88.43  E-value=0.13  Score=28.71  Aligned_cols=16  Identities=38%  Similarity=0.765  Sum_probs=7.5

Q ss_pred             CCCcEEeCCCCccccc
Q 036117          539 PDLQYIDLGDNQLSGV  554 (641)
Q Consensus       539 ~~L~~L~Ls~n~~~~~  554 (641)
                      ++|++|+|++|++++.
T Consensus         2 ~~L~~L~l~~n~i~~~   17 (24)
T PF13516_consen    2 PNLETLDLSNNQITDE   17 (24)
T ss_dssp             TT-SEEE-TSSBEHHH
T ss_pred             CCCCEEEccCCcCCHH
Confidence            4555555555555544

...

>KOG3864 consensus Uncharacterized conserved protein [Function unknown]

Probab=86.09  E-value=0.11  Score=46.57  Aligned_cols=83  Identities=18%  Similarity=0.221  Sum_probs=46.2

Q ss_pred             CCcEEECCCCcCccccCcccCCCCCCcEEeCCCCc-ccccCChhhh-cCCCCCEEeCcCCc-CcccCCccccCCCCCCEE
Q 036117          516 GLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQ-LSGVLTSNWG-KCTNLSNFRISGNR-IKGGIPAELGNLTYLQNL  592 (641)
Q Consensus       516 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-~~~~~~~~~~-~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L  592 (641)
                      .++.++-++..+..+-..-+..++.++.|.+.+|. +.+.-.+.++ -.++|+.|++++|+ |+.---.++..+++|+.|
T Consensus       102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~L  181 (221)
T KOG3864|consen  102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRRL  181 (221)
T ss_pred             eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHHH
Confidence            35666767776666555566666777777777665 2222111221 23566777777664 444444555566666666


Q ss_pred             eCCCCc
Q 036117          593 DIFDNQ  598 (641)
Q Consensus       593 ~L~~n~  598 (641)
                      .+.+=+
T Consensus       182 ~l~~l~  187 (221)
T KOG3864|consen  182 HLYDLP  187 (221)
T ss_pred             HhcCch
Confidence            555443

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=85.31  E-value=0.019  Score=52.33  Aligned_cols=84  Identities=21%  Similarity=0.249  Sum_probs=38.8

Q ss_pred             CCCCCCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCc
Q 036117           84 FSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAW  163 (641)
Q Consensus        84 ~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~  163 (641)
                      +..+...+.||++.|++. .+...|+-++.+..||++.|.+. ..|..++....++.+++..|..+ ..|.+++..++++
T Consensus        38 i~~~kr~tvld~~s~r~v-n~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k  114 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLV-NLGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK  114 (326)
T ss_pred             hhccceeeeehhhhhHHH-hhccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence            334444555555555443 12223444444555555555444 34445555455555555444433 3444444444444


Q ss_pred             EEEeccc
Q 036117          164 LLRIGAN  170 (641)
Q Consensus       164 ~L~l~~n  170 (641)
                      ++++.++
T Consensus       115 ~~e~k~~  121 (326)
T KOG0473|consen  115 KNEQKKT  121 (326)
T ss_pred             hhhhccC
Confidence            4444443

>KOG0473 consensus Leucine-rich repeat protein [Function unknown]

Probab=85.07  E-value=0.025  Score=51.54  Aligned_cols=90  Identities=18%  Similarity=0.173  Sum_probs=64.8

Q ss_pred             cccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCC
Q 036117          511 LWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQ  590 (641)
Q Consensus       511 l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  590 (641)
                      +......+.||++.|++.. .-..|+.++.+..||++.|.+. ..|+.+++...+..+++..|..+ ..|..++..+.++
T Consensus        38 i~~~kr~tvld~~s~r~vn-~~~n~s~~t~~~rl~~sknq~~-~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~~~~k  114 (326)
T KOG0473|consen   38 IASFKRVTVLDLSSNRLVN-LGKNFSILTRLVRLDLSKNQIK-FLPKDAKQQRETVNAASHKNNHS-QQPKSQKKEPHPK  114 (326)
T ss_pred             hhccceeeeehhhhhHHHh-hccchHHHHHHHHHhccHhhHh-hChhhHHHHHHHHHHHhhccchh-hCCccccccCCcc
Confidence            3344556677777776642 2234455667778888888876 67788888888888888888876 7788888888888


Q ss_pred             EEeCCCCcCcccC
Q 036117          591 NLDIFDNQLTGKI  603 (641)
Q Consensus       591 ~L~L~~n~l~~~i  603 (641)
                      ++++..|.+...+
T Consensus       115 ~~e~k~~~~~~~~  127 (326)
T KOG0473|consen  115 KNEQKKTEFFRKL  127 (326)
T ss_pred             hhhhccCcchHHH
Confidence            8888888876443

>smart00370 LRR Leucine-rich repeats, outliers

Probab=84.44  E-value=0.87  Score=25.91  Aligned_cols=14  Identities=57%  Similarity=0.937  Sum_probs=6.7

Q ss_pred             CCCcEEeCCCCccc
Q 036117          539 PDLQYIDLGDNQLS  552 (641)
Q Consensus       539 ~~L~~L~Ls~n~~~  552 (641)
                      ++|+.|+|++|++.
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00370        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34444555555444

>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily

Probab=84.44  E-value=0.87  Score=25.91  Aligned_cols=14  Identities=57%  Similarity=0.937  Sum_probs=6.7

Q ss_pred             CCCcEEeCCCCccc
Q 036117          539 PDLQYIDLGDNQLS  552 (641)
Q Consensus       539 ~~L~~L~Ls~n~~~  552 (641)
                      ++|+.|+|++|++.
T Consensus         2 ~~L~~L~L~~N~l~   15 (26)
T smart00369        2 PNLRELDLSNNQLS   15 (26)
T ss_pred             CCCCEEECCCCcCC
Confidence            34444555555444

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	641
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-36
3riz_A	772	Crystal Structure Of The Plant Steroid Receptor Bri		2e-31
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		3e-36
3rgx_A	768	Structural Insight Into Brassinosteroid Perception		2e-31
1ogq_A	313	The Crystal Structure Of Pgip (Polygalacturonase In		4e-15
2o6q_A	270	Structural Diversity Of The Hagfish Variable Lympho		1e-05
2omy_A	461	Crystal Structure Of Inla S192n/hec1 Complex Length		2e-04
2omv_A	461	Crystal Structure Of Inla S192n Y369s/hec1 Complex		2e-04
2z80_A	353	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		2e-04
1o6s_A	466	Internalin (Listeria Monocytogenes) E-Cadherin (Hum		2e-04
3vq1_A	606	Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLE		2e-04
2omz_A	466	Crystal Structure Of Inla Y369a/hec1 Complex Length		2e-04
2z7x_A	549	Crystal Structure Of The Tlr1-Tlr2 Heterodimer Indu		4e-04
3a79_A	580	Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Len		6e-04
2z81_A	549	Crystal Structure Of The Tlr1-tlr2 Heterodimer Indu		8e-04
2z64_A	599	Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Comp		9e-04

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  146 bits (369), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 174/608 (28%), Positives = 269/608 (44%), Gaps = 97/608 (15%)
Query: 46  NSNSGPCNWNGIQCNEVGSISEINLANSGLDGTLDGFDFSAFPXXXXXXXXXXXXV---- 101
           +SN  PC ++G+ C +   ++ I+L++  L+       FSA                   
Sbjct: 31  SSNKNPCTFDGVTCRD-DKVTSIDLSSKPLN-----VGFSAVSSSLLSLTGLESLFLSNS 84
Query: 102 ---GSIPAGIGNATKLILLDLSSNNLTNPIPP--EIGYLSDLRVLLLYNNSLTGQIPHQL 156
              GS+ +G   +  L  LDLS N+L+ P+     +G  S L+ L + +N+L    P ++
Sbjct: 85  HINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--DFPGKV 141
Query: 157 S---NLQNAWLLRIGANYLEDPDPVKF---KGMASLTDLWLDYNLLEKFPSFIAECSKLM 210
           S    L +  +L + AN +   + V +    G   L  L +  N +      ++ C  L 
Sbjct: 142 SGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD-VSRCVNLE 200
Query: 211 FLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTG 270
           FLD+S N     IP   L     L++L+++ N   G+  R I T  +L+ L +  N+  G
Sbjct: 201 FLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG 258
Query: 271 TIPDEIGLLSNLEILEFHENLFHGLIPSSXXXXXXXXXXXXKSAGLNSSIPKEL-GFCAN 329
            IP     L +L+ L   EN F G                         IP  L G C  
Sbjct: 259 PIPPLP--LKSLQYLSLAENKFTG------------------------EIPDFLSGACDT 292
Query: 330 LTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGL-L 388
           LT L+LS N+  G++P    S   +              SL L  N+ SG+LP +  L +
Sbjct: 293 LTGLDLSGNHFYGAVPPFFGSCSLLE-------------SLALSSNNFSGELPMDTLLKM 339
Query: 389 PKLEYLYLFDNKFSGPIPQQIGNLT-NLFDLQLANNFFNGSIPSTIGNXXXXXXXXXXXX 447
             L+ L L  N+FSG +P+ + NL+ +L  L L++N F+G I                  
Sbjct: 340 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI------------------ 381
Query: 448 XXTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPI 507
                LP    N K+     +L+N     N F+GK+PP +     L+ L  + N L G I
Sbjct: 382 -----LPNLCQNPKNTLQELYLQN-----NGFTGKIPPTLSNCSELVSLHLSFNYLSGTI 431
Query: 508 PESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSN 567
           P SL + + L  ++L  N L+G+I   L     L+ + L  N L+G + S    CTNL+ 
Sbjct: 432 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNW 491
Query: 568 FRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKI 627
             +S NR+ G IP  +G L  L  L + +N  +G IPA+L     LI L+L  N  +  I
Sbjct: 492 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 551
Query: 628 PAEIGKLS 635
           PA + K S
Sbjct: 552 PAAMFKQS 559

>pdb|3RIZ|A Chain A, Crystal Structure Of The Plant Steroid Receptor Bri1 Ectodomain Length = 772

Iteration: 1
 Score =  134 bits (336), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 144/491 (29%), Positives = 213/491 (43%), Gaps = 71/491 (14%)
Query: 180 FKGMASLTDLWLDYNLLE---KFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEY 236
           FK  ASLT L L  N L       + +  CS L FL++S N +     +     L +LE 
Sbjct: 93  FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEV 152
Query: 237 LNLTKNSFEGE-IPREIKT--FPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFH 293
           L+L+ NS  G  +   + +    +L+HL +  NK++G +  ++    NLE L+   N F 
Sbjct: 153 LDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFS 210
Query: 294 GLIPSSXXXXXXXXXXXXKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQ 353
             IP                          LG C+ L  L++S N L+G    ++++  +
Sbjct: 211 TGIPF-------------------------LGDCSALQHLDISGNKLSGDFSRAISTCTE 245
Query: 354 ISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQI-GNL 412
           +  L IS+NQ               G +PP    L  L+YL L +NKF+G IP  + G  
Sbjct: 246 LKLLNISSNQFV-------------GPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGAC 290
Query: 413 TNLFDLQLANNFFNGSIPSTIGNXXXXXXXXXXXXXXTGTLPPE----------IGNSKS 462
             L  L L+ N F G++P   G+              +G LP +          +  S +
Sbjct: 291 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 350
Query: 463 DFG---PRFLRNVS-------FSYNNFSGKLPPGICRG--GNLIYLTANVNKLVGPIPES 510
           +F    P  L N+S        S NNFSG + P +C+     L  L    N   G IP +
Sbjct: 351 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT 410
Query: 511 LWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRI 570
           L NC+ L  + L  N L G I ++LG    L+ + L  N L G +         L    +
Sbjct: 411 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 470
Query: 571 SGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIPAE 630
             N + G IP+ L N T L  + + +N+LTG+IP  + R   L  L L  N  S  IPAE
Sbjct: 471 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE 530
Query: 631 IGKLSRLQYLD 641
           +G    L +LD
Sbjct: 531 LGDCRSLIWLD 541

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  146 bits (368), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 174/608 (28%), Positives = 269/608 (44%), Gaps = 97/608 (15%)
Query: 46  NSNSGPCNWNGIQCNEVGSISEINLANSGLDGTLDGFDFSAFPXXXXXXXXXXXXV---- 101
           +SN  PC ++G+ C +   ++ I+L++  L+       FSA                   
Sbjct: 34  SSNKNPCTFDGVTCRD-DKVTSIDLSSKPLN-----VGFSAVSSSLLSLTGLESLFLSNS 87
Query: 102 ---GSIPAGIGNATKLILLDLSSNNLTNPIPP--EIGYLSDLRVLLLYNNSLTGQIPHQL 156
              GS+ +G   +  L  LDLS N+L+ P+     +G  S L+ L + +N+L    P ++
Sbjct: 88  HINGSV-SGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTL--DFPGKV 144
Query: 157 S---NLQNAWLLRIGANYLEDPDPVKF---KGMASLTDLWLDYNLLEKFPSFIAECSKLM 210
           S    L +  +L + AN +   + V +    G   L  L +  N +      ++ C  L 
Sbjct: 145 SGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVD-VSRCVNLE 203
Query: 211 FLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTG 270
           FLD+S N     IP   L     L++L+++ N   G+  R I T  +L+ L +  N+  G
Sbjct: 204 FLDVSSNNFSTGIPF--LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVG 261
Query: 271 TIPDEIGLLSNLEILEFHENLFHGLIPSSXXXXXXXXXXXXKSAGLNSSIPKEL-GFCAN 329
            IP     L +L+ L   EN F G                         IP  L G C  
Sbjct: 262 PIPPLP--LKSLQYLSLAENKFTG------------------------EIPDFLSGACDT 295
Query: 330 LTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGL-L 388
           LT L+LS N+  G++P    S   +              SL L  N+ SG+LP +  L +
Sbjct: 296 LTGLDLSGNHFYGAVPPFFGSCSLLE-------------SLALSSNNFSGELPMDTLLKM 342
Query: 389 PKLEYLYLFDNKFSGPIPQQIGNLT-NLFDLQLANNFFNGSIPSTIGNXXXXXXXXXXXX 447
             L+ L L  N+FSG +P+ + NL+ +L  L L++N F+G I                  
Sbjct: 343 RGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPI------------------ 384
Query: 448 XXTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPI 507
                LP    N K+     +L+N     N F+GK+PP +     L+ L  + N L G I
Sbjct: 385 -----LPNLCQNPKNTLQELYLQN-----NGFTGKIPPTLSNCSELVSLHLSFNYLSGTI 434
Query: 508 PESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSN 567
           P SL + + L  ++L  N L+G+I   L     L+ + L  N L+G + S    CTNL+ 
Sbjct: 435 PSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNW 494
Query: 568 FRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKI 627
             +S NR+ G IP  +G L  L  L + +N  +G IPA+L     LI L+L  N  +  I
Sbjct: 495 ISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTI 554
Query: 628 PAEIGKLS 635
           PA + K S
Sbjct: 555 PAAMFKQS 562

>pdb|3RGX|A Chain A, Structural Insight Into Brassinosteroid Perception By Bri1 Length = 768

Iteration: 1
 Score =  134 bits (336), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 144/491 (29%), Positives = 210/491 (42%), Gaps = 71/491 (14%)
Query: 180 FKGMASLTDLWLDYNLLE---KFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEY 236
           FK  ASLT L L  N L       + +  CS L FL++S N +     +     L +LE 
Sbjct: 96  FKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEV 155
Query: 237 LNLTKNSFEGE-IPREIKT--FPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFH 293
           L+L+ NS  G  +   + +    +L+HL +  NK++G +  ++    NLE L+   N F 
Sbjct: 156 LDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDV--DVSRCVNLEFLDVSSNNFS 213
Query: 294 GLIPSSXXXXXXXXXXXXKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQ 353
             IP                          LG C+ L  L++S N L+G    ++++  +
Sbjct: 214 TGIPF-------------------------LGDCSALQHLDISGNKLSGDFSRAISTCTE 248
Query: 354 ISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQI-GNL 412
           +  L IS+NQ               G +PP    L  L+YL L +NKF+G IP  + G  
Sbjct: 249 LKLLNISSNQFV-------------GPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGAC 293
Query: 413 TNLFDLQLANNFFNGSIPSTIGNXXXXXXXXXXXXXXTGTLPPEI-------------GN 459
             L  L L+ N F G++P   G+              +G LP +               N
Sbjct: 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFN 353
Query: 460 SKSDFGPRFLRNVS-------FSYNNFSGKLPPGICRG--GNLIYLTANVNKLVGPIPES 510
             S   P  L N+S        S NNFSG + P +C+     L  L    N   G IP +
Sbjct: 354 EFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPT 413
Query: 511 LWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRI 570
           L NC+ L  + L  N L G I ++LG    L+ + L  N L G +         L    +
Sbjct: 414 LSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLIL 473
Query: 571 SGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIPAE 630
             N + G IP+ L N T L  + + +N+LTG+IP  + R   L  L L  N  S  IPAE
Sbjct: 474 DFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAE 533
Query: 631 IGKLSRLQYLD 641
           +G    L +LD
Sbjct: 534 LGDCRSLIWLD 544

>pdb|1OGQ|A Chain A, The Crystal Structure Of Pgip (Polygalacturonase Inhibiting Protein), A Leucine Rich Repeat Protein Involved In Plant Defense Length = 313

Iteration: 1
 Score = 79.7 bits (195), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 77/272 (28%), Positives = 119/272 (43%), Gaps = 42/272 (15%)
Query: 376 DLSG-------KLPPEIGLLPKLEYLYLFD-NKFSGPIPQQIGNLTNLFDLQLANNFFNG 427
           DLSG        +P  +  LP L +LY+   N   GPIP  I  LT L  L + +   +G
Sbjct: 56  DLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSG 115
Query: 428 SIPSTIGNXXXXXXXXXXXXXXTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGI 487
           +IP  +                                 + L  + FSYN  SG LPP I
Sbjct: 116 AIPDFLSQI------------------------------KTLVTLDFSYNALSGTLPPSI 145
Query: 488 CRGGNLIYLTANVNKLVGPIPESLWNCTGL-TRVRLEQNRLDGDITNALGIYPDLQYIDL 546
               NL+ +T + N++ G IP+S  + + L T + + +NRL G I        +L ++DL
Sbjct: 146 SSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANL-NLAFVDL 204
Query: 547 GDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQ 606
             N L G  +  +G   N     ++ N +   +  ++G    L  LD+ +N++ G +P  
Sbjct: 205 SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDL-GKVGLSKNLNGLDLRNNRIYGTLPQG 263
Query: 607 LFRSSFLIRLNLRRNQLSDKIPAEIGKLSRLQ 638
           L +  FL  LN+  N L  +IP + G L R  
Sbjct: 264 LTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFD 294

>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte Receptors A29 Length = 270

Iteration: 1
 Score = 48.1 bits (113), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 86/192 (44%), Gaps = 10/192 (5%)
Query: 103 SIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNN---SLTGQIPHQLSNL 159
           +IP+ I   TK   LDL SN L++        L+ LR+L L +N   +L   I  +L NL
Sbjct: 30  AIPSNIPADTKK--LDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNL 87
Query: 160 QNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAEC-SKLMFLDLSDNL 218
           +  W   +  N L+      F  + +L +L LD N L+  P  + +  +KL +L L  N 
Sbjct: 88  ETLW---VTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNE 144
Query: 219 IMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGL 278
           +   +P      L +L+ L L  N  +           +L+ LKL  N+L          
Sbjct: 145 LQS-LPKGVFDKLTSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDS 203
Query: 279 LSNLEILEFHEN 290
           L  L++L+  EN
Sbjct: 204 LEKLKMLQLQEN 215

>pdb|2OMY|A Chain A, Crystal Structure Of Inla S192n/hec1 Complex Length = 461

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 88/319 (27%), Positives = 138/319 (43%), Gaps = 52/319 (16%)
Query: 326 FCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEI 385
           +  NLT +  S N LT   PL   +L ++ ++ ++NNQ+++I  L   + +L+G      
Sbjct: 61  YLNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITPLA-NLTNLTG------ 111
Query: 386 GLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNXXXXXXXXXX 445
                   L LF+N+ +   P  + NLTNL  L+L++N     I +  G           
Sbjct: 112 --------LTLFNNQITDIDP--LKNLTNLNRLELSSNTI-SDISALSG----------- 149
Query: 446 XXXXTGTLPPEIGNSKSDFGP----RFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVN 501
               T       GN  +D  P      L  +  S N  S      + +  NL  L A  N
Sbjct: 150 ---LTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNN 204
Query: 502 KLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGK 561
           ++    P  L   T L  + L  N+L  DI   L    +L  +DL +NQ+S +  +    
Sbjct: 205 QISDITP--LGILTNLDELSLNGNQL-KDI-GTLASLTNLTDLDLANNQISNL--APLSG 258
Query: 562 CTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRN 621
            T L+  ++  N+I    P  L  LT L NL++ +NQL    P    ++  L  L L  N
Sbjct: 259 LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNLKN--LTYLTLYFN 314
Query: 622 QLSDKIPAEIGKLSRLQYL 640
            +SD  P  +  L++LQ L
Sbjct: 315 NISDISP--VSSLTKLQRL 331

>pdb|2OMV|A Chain A, Crystal Structure Of Inla S192n Y369s/hec1 Complex Length = 461

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 88/319 (27%), Positives = 138/319 (43%), Gaps = 52/319 (16%)
Query: 326 FCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEI 385
           +  NLT +  S N LT   PL   +L ++ ++ ++NNQ+++I  L   + +L+G      
Sbjct: 61  YLNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITPLA-NLTNLTG------ 111
Query: 386 GLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNXXXXXXXXXX 445
                   L LF+N+ +   P  + NLTNL  L+L++N     I +  G           
Sbjct: 112 --------LTLFNNQITDIDP--LKNLTNLNRLELSSNTI-SDISALSG----------- 149
Query: 446 XXXXTGTLPPEIGNSKSDFGP----RFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVN 501
               T       GN  +D  P      L  +  S N  S      + +  NL  L A  N
Sbjct: 150 ---LTSLQQLNFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNN 204
Query: 502 KLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGK 561
           ++    P  L   T L  + L  N+L  DI   L    +L  +DL +NQ+S +  +    
Sbjct: 205 QISDITP--LGILTNLDELSLNGNQL-KDI-GTLASLTNLTDLDLANNQISNL--APLSG 258
Query: 562 CTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRN 621
            T L+  ++  N+I    P  L  LT L NL++ +NQL    P    ++  L  L L  N
Sbjct: 259 LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNLKN--LTYLTLYFN 314
Query: 622 QLSDKIPAEIGKLSRLQYL 640
            +SD  P  +  L++LQ L
Sbjct: 315 NISDISP--VSSLTKLQRL 331

>pdb|2Z80|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 353

Iteration: 1
 Score = 44.7 bits (104), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 89/198 (44%), Gaps = 7/198 (3%)
Query: 101 VGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQ 160
           + SIP+G+  A K   LDLS+N +T     ++    +L+ L+L +N +        S+L 
Sbjct: 43  LNSIPSGLTEAVKS--LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG 100
Query: 161 NAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKF--PSFIAECSKLMFLDLSDNL 218
           +   L +  NYL +     FK ++SLT L L  N  +     S  +  +KL  L + +  
Sbjct: 101 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD 160
Query: 219 IMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGL 278
               I  +    L  LE L +  +  +   P+ +K+   + HL L   +    +   + +
Sbjct: 161 TFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDV 220
Query: 279 LSNLEILEFHE---NLFH 293
            S++E LE  +   + FH
Sbjct: 221 TSSVECLELRDTDLDTFH 238

>pdb|1O6S|A Chain A, Internalin (Listeria Monocytogenes) E-Cadherin (Human) Recognition Complex Length = 466

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 88/319 (27%), Positives = 138/319 (43%), Gaps = 52/319 (16%)
Query: 326 FCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEI 385
           +  NLT +  S N LT   PL   +L ++ ++ ++NNQ+++I  L   + +L+G      
Sbjct: 66  YLNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITPLA-NLTNLTG------ 116
Query: 386 GLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNXXXXXXXXXX 445
                   L LF+N+ +   P  + NLTNL  L+L++N     I +  G           
Sbjct: 117 --------LTLFNNQITDIDP--LKNLTNLNRLELSSNTI-SDISALSG----------- 154
Query: 446 XXXXTGTLPPEIGNSKSDFGP----RFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVN 501
               T       GN  +D  P      L  +  S N  S      + +  NL  L A  N
Sbjct: 155 ---LTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNN 209
Query: 502 KLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGK 561
           ++    P  L   T L  + L  N+L  DI   L    +L  +DL +NQ+S +  +    
Sbjct: 210 QISDITP--LGILTNLDELSLNGNQL-KDI-GTLASLTNLTDLDLANNQISNL--APLSG 263
Query: 562 CTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRN 621
            T L+  ++  N+I    P  L  LT L NL++ +NQL    P    ++  L  L L  N
Sbjct: 264 LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNLKN--LTYLTLYFN 319
Query: 622 QLSDKIPAEIGKLSRLQYL 640
            +SD  P  +  L++LQ L
Sbjct: 320 NISDISP--VSSLTKLQRL 336

>pdb|3VQ1|A Chain A, Crystal Structure Of Mouse Tlr4MD-2LIPID IVA COMPLEX Length = 606

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 43/164 (26%), Positives = 74/164 (45%), Gaps = 9/164 (5%)
Query: 481 GKLPPGICRGGNLIY--LTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIY 538
           G L P I    N+ Y  +   ++K+   IP S  N      + L  N L    + +   +
Sbjct: 2   GSLNPCIEVVPNITYQCMDQKLSKVPDDIPSSTKN------IDLSFNPLKILKSYSFSNF 55
Query: 539 PDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQ 598
            +LQ++DL   ++  +    W    +LSN  ++GN I+   P     LT L+NL   + +
Sbjct: 56  SELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETK 115
Query: 599 LTGKIPAQLFRSSFLIRLNLRRNQL-SDKIPAEIGKLSRLQYLD 641
           L       + +   L +LN+  N + S K+PA    L+ L ++D
Sbjct: 116 LASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVD 159

>pdb|2OMZ|A Chain A, Crystal Structure Of Inla Y369a/hec1 Complex Length = 466

Iteration: 1
 Score = 44.3 bits (103), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 88/319 (27%), Positives = 138/319 (43%), Gaps = 52/319 (16%)
Query: 326 FCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEI 385
           +  NLT +  S N LT   PL   +L ++ ++ ++NNQ+++I  L   + +L+G      
Sbjct: 65  YLNNLTQINFSNNQLTDITPLK--NLTKLVDILMNNNQIADITPLA-NLTNLTG------ 115
Query: 386 GLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNXXXXXXXXXX 445
                   L LF+N+ +   P  + NLTNL  L+L++N     I +  G           
Sbjct: 116 --------LTLFNNQITDIDP--LKNLTNLNRLELSSNTI-SDISALSG----------- 153
Query: 446 XXXXTGTLPPEIGNSKSDFGP----RFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVN 501
               T       GN  +D  P      L  +  S N  S      + +  NL  L A  N
Sbjct: 154 ---LTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDI--SVLAKLTNLESLIATNN 208
Query: 502 KLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGK 561
           ++    P  L   T L  + L  N+L  DI   L    +L  +DL +NQ+S +  +    
Sbjct: 209 QISDITP--LGILTNLDELSLNGNQL-KDI-GTLASLTNLTDLDLANNQISNL--APLSG 262
Query: 562 CTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRN 621
            T L+  ++  N+I    P  L  LT L NL++ +NQL    P    ++  L  L L  N
Sbjct: 263 LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISPISNLKN--LTYLTLYFN 318
Query: 622 QLSDKIPAEIGKLSRLQYL 640
            +SD  P  +  L++LQ L
Sbjct: 319 NISDISP--VSSLTKLQRL 335

>pdb|2Z7X|A Chain A, Crystal Structure Of The Tlr1-Tlr2 Heterodimer Induced By Binding Of A Tri-Acylated Lipopeptide Length = 549

Iteration: 1
 Score = 43.5 bits (101), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 50/198 (25%), Positives = 89/198 (44%), Gaps = 7/198 (3%)
Query: 101 VGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQ 160
           + SIP+G+  A K   LDLS+N +T     ++    +L+ L+L +N +        S+L 
Sbjct: 17  LNSIPSGLTEAVKS--LDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG 74
Query: 161 NAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKF--PSFIAECSKLMFLDLSDNL 218
           +   L +  NYL +     FK ++SLT L L  N  +     S  +  +KL  L + +  
Sbjct: 75  SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMD 134
Query: 219 IMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGL 278
               I  +    L  LE L +  +  +   P+ +K+   + HL L   +    +   + +
Sbjct: 135 TFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDV 194
Query: 279 LSNLEILEFHE---NLFH 293
            S++E LE  +   + FH
Sbjct: 195 TSSVECLELRDTDLDTFH 212

>pdb|3A79|A Chain A, Crystal Structure Of Tlr2-Tlr6-Pam2csk4 Complex Length = 580

Iteration: 1
 Score = 42.7 bits (99), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 104/255 (40%), Gaps = 53/255 (20%)
Query: 188 DLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGE 247
           DL   Y+LLEK      E SK+             +P     HL++LE+L+L++N    E
Sbjct: 327 DLSTVYSLLEKVKRITVENSKVFL-----------VPCSFSQHLKSLEFLDLSENLMVEE 375
Query: 248 IPREIK---TFPKLRHLKLGQNKL-----TGTIPDEIGLLSNLEILEFHENLFHGLIPSS 299
             +       +P L+ L L QN L     TG I   +  L NL  L+   N FH + P S
Sbjct: 376 YLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEI---LLTLKNLTSLDISRNTFHPM-PDS 431
Query: 300 XXXXXXXXXXXXKSAGL---NSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISE 356
                        S G+    + IP+       L  L++S NNL  S  L L  L+   E
Sbjct: 432 CQWPEKMRFLNLSSTGIRVVKTCIPQ------TLEVLDVSNNNL-DSFSLFLPRLQ---E 481
Query: 357 LGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQI-GNLTNL 415
           L IS N+L               K  P+  L P L  + +  N+    +P  I   LT+L
Sbjct: 482 LYISRNKL---------------KTLPDASLFPVLLVMKIASNQLKS-VPDGIFDRLTSL 525
Query: 416 FDLQLANNFFNGSIP 430
             + L  N ++ S P
Sbjct: 526 QKIWLHTNPWDCSCP 540

>pdb|2Z81|A Chain A, Crystal Structure Of The Tlr1-tlr2 Heterodimer Induced By Binding Of A Tri-acylated Lipopeptide Length = 549

Iteration: 1
 Score = 42.4 bits (98), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 73/255 (28%), Positives = 104/255 (40%), Gaps = 53/255 (20%)
Query: 188 DLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGE 247
           DL   Y+LLEK      E SK+             +P     HL++LE+L+L++N    E
Sbjct: 301 DLSTVYSLLEKVKRITVENSKVFL-----------VPCSFSQHLKSLEFLDLSENLMVEE 349
Query: 248 IPREIK---TFPKLRHLKLGQNKL-----TGTIPDEIGLLSNLEILEFHENLFHGLIPSS 299
             +       +P L+ L L QN L     TG I   +  L NL  L+   N FH + P S
Sbjct: 350 YLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEI---LLTLKNLTSLDISRNTFHPM-PDS 405
Query: 300 XXXXXXXXXXXXKSAGL---NSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISE 356
                        S G+    + IP+       L  L++S NNL  S  L L  L+   E
Sbjct: 406 CQWPEKMRFLNLSSTGIRVVKTCIPQ------TLEVLDVSNNNL-DSFSLFLPRLQ---E 455
Query: 357 LGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQI-GNLTNL 415
           L IS N+L               K  P+  L P L  + +  N+    +P  I   LT+L
Sbjct: 456 LYISRNKL---------------KTLPDASLFPVLLVMKISRNQLKS-VPDGIFDRLTSL 499
Query: 416 FDLQLANNFFNGSIP 430
             + L  N ++ S P
Sbjct: 500 QKIWLHTNPWDCSCP 514

>pdb|2Z64|A Chain A, Crystal Structure Of Mouse Tlr4 And Mouse Md-2 Complex Length = 599

Iteration: 1
 Score = 42.4 bits (98), Expect = 9e-04,   Method: Compositional matrix adjust.
 Identities = 29/105 (27%), Positives = 52/105 (49%), Gaps = 1/105 (0%)
Query: 538 YPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDN 597
           + +LQ++DL   ++  +    W    +LSN  ++GN I+   P     LT L+NL   + 
Sbjct: 50  FSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVET 109
Query: 598 QLTGKIPAQLFRSSFLIRLNLRRNQL-SDKIPAEIGKLSRLQYLD 641
           +L       + +   L +LN+  N + S K+PA    L+ L ++D
Sbjct: 110 KLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVD 154

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	641
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-150
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-136
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-133
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	1e-100
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	3e-78
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-85
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-80
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-80
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	4e-76
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	3e-60
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	2e-19
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	1e-83
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	4e-73
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	7e-71
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	1e-52
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	2e-38
3fxi_A	605	TLR4, htoll, TOLL-like receptor 4; leucine rich re	4e-31
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	2e-69
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-66
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	9e-50
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	3e-32
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	6e-67
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	4e-48
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-64
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-63
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-62
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	1e-61
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	2e-53
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	4e-10
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	3e-60
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	2e-53
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	5e-50
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	1e-37
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-46
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-44
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	3e-33
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	2e-31
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	6e-21
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-44
1o6v_A	466	Internalin A; bacterial infection, extracellular r	2e-44
1o6v_A	466	Internalin A; bacterial infection, extracellular r	4e-42
1o6v_A	466	Internalin A; bacterial infection, extracellular r	3e-29
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-44
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	6e-39
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-38
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	1e-33
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-43
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	7e-41
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-33
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	6e-31
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	2e-19
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	3e-19
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	1e-10
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-42
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	1e-35
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-42
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-39
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	3e-36
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	6e-35
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	7e-34
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-30
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	2e-16
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-37
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-31
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	8e-29
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	2e-28
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	3e-21
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-37
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	9e-36
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	5e-35
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-34
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-33
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	4e-28
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	2e-24
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	8e-24
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	3e-20
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	6e-35
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	8e-32
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	2e-28
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	1e-26
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	5e-20
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	9e-34
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-33
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-32
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-31
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	7e-31
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-31
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	8e-22
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	3e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	2e-33
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-32
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-28
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-21
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-33
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	7e-32
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-31
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	1e-28
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-28
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	2e-22
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-12
3jqh_A	167	C-type lectin domain family 4 member M; DC-signr,	6e-12
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-32
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	2e-29
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-25
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	3e-19
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	1e-04
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	2e-31
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	9e-29
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	3e-27
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	5e-26
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	1e-25
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	8e-05
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	3e-31
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-27
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	6e-23
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	9e-23
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-31
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-21
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	4e-18
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	1e-17
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	7e-08
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-29
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-24
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	7e-21
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	2e-18
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	4e-16
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	6e-07
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	6e-28
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	7e-26
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	3e-24
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	2e-20
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-25
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-23
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	2e-21
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	8e-19
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	1e-17
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	6e-12
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-25
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-25
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-22
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	6e-21
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	3e-15
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	1e-11
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	3e-25
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	5e-21
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-19
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	6e-17
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	9e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	7e-25
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-23
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	5e-23
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	6e-16
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	4e-15
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-25
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-24
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-23
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-17
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-10
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-23
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	2e-23
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	4e-22
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-20
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	1e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-21
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-21
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	4e-21
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	3e-19
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	1e-17
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-16
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	2e-13
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-20
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-20
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-19
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	7e-18
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	1e-12
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	3e-12
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	6e-20
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-18
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	3e-13
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	2e-11
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	1e-18
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-15
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	4e-12
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	3e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	5e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	9e-10
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	2e-05
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	6e-18
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-17
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	2e-16
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-13
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	8e-12
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	3e-11
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	1e-10
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	2e-17
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	4e-12
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	1e-11
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	5e-07
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	3e-06
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-17
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	4e-16
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-14
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-13
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	7e-12
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	1e-11
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	2e-09
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-08
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	8e-07
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	3e-05
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-16
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	7e-16
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	1e-14
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-13
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	3e-12
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	2e-11
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-16
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-14
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	5e-13
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	1e-12
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	2e-04
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	6e-16
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	1e-14
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	5e-13
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	2e-11
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	3e-11
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	2e-15
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-14
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	3e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	4e-13
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	8e-10
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	1e-07
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-15
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	4e-13
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	1e-09
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	3e-08
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	9e-06
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-13
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	2e-12
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-07
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	7e-05
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	1e-04
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	2e-13
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-12
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	3e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	8e-10
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	1e-09
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	6e-08
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	9e-07
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	4e-13
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	1e-12
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	3e-10
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	6e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	7e-08
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	5e-07
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	1e-12
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	7e-11
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	8e-11
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-09
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-08
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	3e-06
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	2e-04
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	4e-04
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	2e-10
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	6e-09
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	1e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-10
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-08
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-07
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	2e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	3e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	6e-06
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	5e-04
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	1e-09
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	3e-07
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	2e-06
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	4e-05
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-09
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	2e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	7e-08
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	1e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	3e-07
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	5e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	4e-09
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	5e-08
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-05
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	1e-04
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	3e-04
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	6e-09
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	2e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	9e-09
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-08
3e6j_A	229	Variable lymphocyte receptor diversity region; var	9e-07
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-06
3e6j_A	229	Variable lymphocyte receptor diversity region; var	2e-05
3e6j_A	229	Variable lymphocyte receptor diversity region; var	6e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-08
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-07
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-06
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	1e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	2e-05
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	7e-05
3m19_A	251	Variable lymphocyte receptor A diversity region; a	4e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	5e-08
3m19_A	251	Variable lymphocyte receptor A diversity region; a	5e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	5e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	6e-07
3m19_A	251	Variable lymphocyte receptor A diversity region; a	3e-06
3m19_A	251	Variable lymphocyte receptor A diversity region; a	1e-04
3m19_A	251	Variable lymphocyte receptor A diversity region; a	7e-04
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	5e-07
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	7e-06
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-07
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	9e-05
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	4e-04
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	5e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	1e-06
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-05
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	2e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	3e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	6e-04
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	7e-04
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-06
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	1e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	7e-05
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	6e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	2e-06
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	4e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	5e-04
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	8e-04
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	2e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-06
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	3e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	9e-05
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	4e-04
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	3e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	8e-06
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-05
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	1e-04
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	4e-05
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	3e-04
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	8e-05
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	9e-04
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	7e-04

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  451 bits (1162), Expect = e-150
 Identities = 181/640 (28%), Positives = 283/640 (44%), Gaps = 51/640 (7%)

Query: 19  SAQKEAKALLNWKSSLVSSS-LPSWTAINSNSGPCNWNGIQCNEVGSISEINLANSGLDG 77
           S  +E   L+++K  L   + LP W   +SN  PC ++G+ C +   ++ I+L++  L+ 
Sbjct: 9   SLYREIHQLISFKDVLPDKNLLPDW---SSNKNPCTFDGVTCRD-DKVTSIDLSSKPLNV 64

Query: 78  TLDGF--DFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPP--EIG 133
                     +   L +L L+ +++ GS+  G   +  L  LDLS N+L+ P+     +G
Sbjct: 65  GFSAVSSSLLSLTGLESLFLSNSHINGSVS-GFKCSASLTSLDLSRNSLSGPVTTLTSLG 123

Query: 134 YLSDLRVLLLYNNSLTGQIP-HQLSNLQNAWLLRIGANYLEDPDPVKFK---GMASLTDL 189
             S L+ L + +N+L           L +  +L + AN +   + V +    G   L  L
Sbjct: 124 SCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHL 183

Query: 190 WLDYNLLE-KFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEI 248
            +  N +       ++ C  L FLD+S N     IP   L     L++L+++ N   G+ 
Sbjct: 184 AISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP--FLGDCSALQHLDISGNKLSGDF 239

Query: 249 PREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSL-GNLRRLQ 307
            R I T  +L+ L +  N+  G IP     L +L+ L   EN F G IP  L G    L 
Sbjct: 240 SRAISTCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLT 297

Query: 308 RLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPL-SLASLRQISELGISNNQLSE 366
            L+L       ++P   G C+ L  L LS NN +G LP+ +L  +R +  L +S N+ S 
Sbjct: 298 GLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFS- 356

Query: 367 IISLQLQMNDLSGKLPPEIG-LLPKLEYLYLFDNKFSGPIPQQIGN--LTNLFDLQLANN 423
                       G+LP  +  L   L  L L  N FSGPI   +       L +L L NN
Sbjct: 357 ------------GELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN 404

Query: 424 FFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKL 483
            F G IP T+ N S LV L LS N L+GT+P  +G+         LR++    N   G++
Sbjct: 405 GFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSK------LRDLKLWLNMLEGEI 458

Query: 484 PPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQY 543
           P  +     L  L  + N L G IP  L NCT L  + L  NRL G+I   +G   +L  
Sbjct: 459 PQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAI 518

Query: 544 IDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKI 603
           + L +N  SG + +  G C +L    ++ N   G IPA +   +      I  N + GK 
Sbjct: 519 LKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQS----GKIAANFIAGKR 574

Query: 604 PAQLFRSSFLIRLNLRRN--QLSDKIPAEIGKLSRLQYLD 641
              +         +   N  +       ++ +LS     +
Sbjct: 575 YVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCN 614

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  415 bits (1070), Expect = e-136
 Identities = 163/590 (27%), Positives = 260/590 (44%), Gaps = 36/590 (6%)

Query: 46  NSNSGPCNWNGIQCNEVGSISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIP 105
           NS SG      +  +  G +  + ++ + + G +D    S   NL  L+++ NN    IP
Sbjct: 161 NSISGANVVGWVLSDGCGELKHLAISGNKISGDVD---VSRCVNLEFLDVSSNNFSTGIP 217

Query: 106 AGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLL 165
             +G+ + L  LD+S N L+      I   ++L++L + +N   G IP     L++   L
Sbjct: 218 F-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNISSNQFVGPIP--PLPLKSLQYL 274

Query: 166 RIGANYLEDPDPVKFKG-MASLTDLWLDYNLLE-KFPSFIAECSKLMFLDLSDNLIMGHI 223
            +  N      P    G   +LT L L  N      P F   CS L  L LS N   G +
Sbjct: 275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGEL 334

Query: 224 PIEQLTHLENLEYLNLTKNSFEGEIPREI-KTFPKLRHLKLGQNKLTGTIPDEIG--LLS 280
           P++ L  +  L+ L+L+ N F GE+P  +      L  L L  N  +G I   +     +
Sbjct: 335 PMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKN 394

Query: 281 NLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNL 340
            L+ L    N F G IP +L N   L  L+L    L+ +IP  LG  + L  L+L +N L
Sbjct: 395 TLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNML 454

Query: 341 TGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNK 400
            G +P  L  ++ +  L +  N L+             G++P  +     L ++ L +N+
Sbjct: 455 EGEIPQELMYVKTLETLILDFNDLT-------------GEIPSGLSNCTNLNWISLSNNR 501

Query: 401 FSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNS 460
            +G IP+ IG L NL  L+L+NN F+G+IP+ +G+  SL+ L L++N   GT+P  +   
Sbjct: 502 LTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQ 561

Query: 461 KSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNL--IYLTANVNKLVGPIPESLWNCTGLT 518
                         + N  +GK    I   G     +   N+ +  G   E L   +   
Sbjct: 562 SGKI----------AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRN 611

Query: 519 RVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGG 578
              +      G  +        + ++D+  N LSG +    G    L    +  N I G 
Sbjct: 612 PCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGS 671

Query: 579 IPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIP 628
           IP E+G+L  L  LD+  N+L G+IP  +   + L  ++L  N LS  IP
Sbjct: 672 IPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIP 721

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  408 bits (1051), Expect = e-133
 Identities = 153/588 (26%), Positives = 248/588 (42%), Gaps = 38/588 (6%)

Query: 64  SISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGI---GNATKLILLDLS 120
            +  +N++++ LD            +L  L+L+ N++ G+   G        +L  L +S
Sbjct: 127 GLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAIS 186

Query: 121 SNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKF 180
            N ++  +   +    +L  L + +N+ +  IP  L +      L I  N L        
Sbjct: 187 GNKISGDVD--VSRCVNLEFLDVSSNNFSTGIP-FLGDCSALQHLDISGNKLSGDFSRAI 243

Query: 181 KGMASLTDLWLDYNLLE-KFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNL 239
                L  L +  N      P        L +L L++N   G IP       + L  L+L
Sbjct: 244 STCTELKLLNISSNQFVGPIPPLP--LKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDL 301

Query: 240 TKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDE-IGLLSNLEILEFHENLFHGLIPS 298
           + N F G +P    +   L  L L  N  +G +P + +  +  L++L+   N F G +P 
Sbjct: 302 SGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPE 361

Query: 299 SLGNLR-RLQRLNLKSAGLNSSIPKELGFC--ANLTFLELSINNLTGSLPLSLASLRQIS 355
           SL NL   L  L+L S   +  I   L       L  L L  N  TG +P +L++  ++ 
Sbjct: 362 SLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELV 421

Query: 356 ELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNL 415
            L +S N LS             G +P  +G L KL  L L+ N   G IPQ++  +  L
Sbjct: 422 SLHLSFNYLS-------------GTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTL 468

Query: 416 FDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFS 475
             L L  N   G IPS + N ++L  +SLS+N+LTG +P  IG  ++      L  +  S
Sbjct: 469 ETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLEN------LAILKLS 522

Query: 476 YNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNAL 535
            N+FSG +P  +    +LI+L  N N   G IP +++  +G     +  N + G     +
Sbjct: 523 NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGK----IAANFIAGKRYVYI 578

Query: 536 GIYPDLQYIDLGDN--QLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLD 593
                 +      N  +  G+ +    + +  +   I+     G       N   +  LD
Sbjct: 579 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 638

Query: 594 IFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIPAEIGKLSRLQYLD 641
           +  N L+G IP ++    +L  LNL  N +S  IP E+G L  L  LD
Sbjct: 639 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILD 686

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  320 bits (823), Expect = e-100
 Identities = 128/461 (27%), Positives = 209/461 (45%), Gaps = 21/461 (4%)

Query: 64  SISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNN 123
           S+  ++LA +   G +  F   A   LT L+L+ N+  G++P   G+ + L  L LSSNN
Sbjct: 270 SLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNN 329

Query: 124 LTNPIPPE-IGYLSDLRVLLLYNNSLTGQIPHQLSNL-QNAWLLRIGANYLED--PDPVK 179
            +  +P + +  +  L+VL L  N  +G++P  L+NL  +   L + +N         + 
Sbjct: 330 FSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLC 389

Query: 180 FKGMASLTDLWLDYNLLE-KFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLN 238
                +L +L+L  N    K P  ++ CS+L+ L LS N + G IP   L  L  L  L 
Sbjct: 390 QNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSS-LGSLSKLRDLK 448

Query: 239 LTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPS 298
           L  N  EGEIP+E+     L  L L  N LTG IP  +   +NL  +    N   G IP 
Sbjct: 449 LWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPK 508

Query: 299 SLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELG 358
            +G L  L  L L +   + +IP ELG C +L +L+L+ N   G++P ++          
Sbjct: 509 WIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAAN 568

Query: 359 ---------ISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQI 409
                    I N+ + +       + +  G    ++  L       +    + G      
Sbjct: 569 FIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTF 628

Query: 410 GNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFL 469
            N  ++  L ++ N  +G IP  IG++  L  L+L  N ++G++P E+G+ +       L
Sbjct: 629 DNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRG------L 682

Query: 470 RNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPES 510
             +  S N   G++P  +     L  +  + N L GPIPE 
Sbjct: 683 NILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM 723

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A* Length = 768

 Score =  263 bits (674), Expect = 3e-78
 Identities = 114/400 (28%), Positives = 170/400 (42%), Gaps = 22/400 (5%)

Query: 64  SISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATK--LILLDLSS 121
            +  ++L+ +   G L     +   +L  L+L+ NN  G I   +    K  L  L L +
Sbjct: 344 GLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQN 403

Query: 122 NNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFK 181
           N  T  IPP +   S+L  L L  N L+G IP  L +L     L++  N LE   P +  
Sbjct: 404 NGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELM 463

Query: 182 GMASLTDLWLDYNLLE-KFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLT 240
            + +L  L LD+N L  + PS ++ C+ L ++ LS+N + G IP   +  LENL  L L+
Sbjct: 464 YVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKW-IGRLENLAILKLS 522

Query: 241 KNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSL 300
            NSF G IP E+     L  L L  N   GTIP  +   S         N   G     +
Sbjct: 523 NNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKI----AANFIAGKRYVYI 578

Query: 301 GNLRRLQRLNLKSAGLNSS--IPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELG 358
            N    +  +     L       ++L   +      ++     G    +  +   +  L 
Sbjct: 579 KNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLD 638

Query: 359 ISNNQLS-----------EIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQ 407
           +S N LS            +  L L  ND+SG +P E+G L  L  L L  NK  G IPQ
Sbjct: 639 MSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQ 698

Query: 408 QIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSN 447
            +  LT L ++ L+NN  +G IP   G   +       +N
Sbjct: 699 AMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNN 737

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  280 bits (719), Expect = 2e-85
 Identities = 117/585 (20%), Positives = 200/585 (34%), Gaps = 32/585 (5%)

Query: 79  LDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDL 138
           L         N+T LNL  N L     A     ++L  LD+  N ++   P     L  L
Sbjct: 16  LTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPML 75

Query: 139 RVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEK 198
           +VL L +N L+       +   N   L + +N ++      F    +L  L L +N L  
Sbjct: 76  KVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSS 135

Query: 199 F-PSFIAECSKLMFLDLSDNLIMGHIPIE-QLTHLENLEYLNLTKNSFEGEIPREIKTFP 256
                  +   L  L LS+N I      E  +    +L+ L L+ N  +   P       
Sbjct: 136 TKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIG 195

Query: 257 KLRHLKLGQNKLTGTIPDEIGL---LSNLEILEFHENLFHGLIPSSLGNLR--RLQRLNL 311
           +L  L L   +L  ++ +++ L    +++  L    +       ++   L+   L  L+L
Sbjct: 196 RLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 255

Query: 312 KSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQ 371
               LN        +   L +  L  NN+      SL  L  +  L +  +   + ISL 
Sbjct: 256 SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISL- 314

Query: 372 LQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPS 431
                L          L  LE+L + DN   G        L NL  L L+N+F +    +
Sbjct: 315 ---ASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLT 371

Query: 432 TIG----NLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGI 487
                    S L  L+L+ N+++                  L  +    N    +L    
Sbjct: 372 NETFVSLAHSPLHILNLTKNKISKIESDAFSWLGH------LEVLDLGLNEIGQELTGQE 425

Query: 488 CRG-GNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDG--DITNALGIYPDLQYI 544
            RG  N+  +  + NK +     S      L R+ L +  L       +      +L  +
Sbjct: 426 WRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTIL 485

Query: 545 DLGDNQLSGVLTSNWGKCTNLSNFRISGNRI--------KGGIPAELGNLTYLQNLDIFD 596
           DL +N ++ +          L    +  N +         GG    L  L++L  L++  
Sbjct: 486 DLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLES 545

Query: 597 NQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIPAEIGKLSRLQYLD 641
           N               L  ++L  N L+    +       L+ L+
Sbjct: 546 NGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLN 590

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  267 bits (684), Expect = 2e-80
 Identities = 114/605 (18%), Positives = 201/605 (33%), Gaps = 52/605 (8%)

Query: 64  SISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNN 123
           +I+ +NL ++ L   L   +F+ +  LT+L++  N +    P        L +L+L  N 
Sbjct: 26  NITVLNLTHNQLRR-LPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84

Query: 124 LTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGM 183
           L+        + ++L  L L +NS+     +     +N   L +  N L          +
Sbjct: 85  LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQL 144

Query: 184 ASLTDLWLDYNLLEKFPS---FIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLT 240
            +L +L L  N ++   S    I   S L  L+LS N I    P      +  L  L L 
Sbjct: 145 ENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP-GCFHAIGRLFGLFLN 203

Query: 241 KNSFEGEIPREIKTF---PKLRHLKLGQNKLTGTIPDEIGLL--SNLEILEFHENLFHGL 295
                  +  ++        +R+L L  ++L+ T       L  +NL +L+   N  + +
Sbjct: 204 NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVV 263

Query: 296 IPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLEL---------SINNLTGSLPL 346
              S   L +L+   L+   +       L    N+ +L L         S+ +L      
Sbjct: 264 GNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDF 323

Query: 347 SLASLRQISELGISNNQLSEIIS-----------LQLQMNDLSGKLPPEIGL----LPKL 391
           S   L+ +  L + +N +  I S           L L  +  S +              L
Sbjct: 324 SFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPL 383

Query: 392 EYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIP-STIGNLSSLVKLSLSSNQLT 450
             L L  NK S         L +L  L L  N     +       L ++ ++ LS N+  
Sbjct: 384 HILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYL 443

Query: 451 GTLPPEIGNSKSDFGPRFLRNVSFSYNNFSG--KLPPGICRGGNLIYLTANVNKLVGPIP 508
                      S      L+ +             P       NL  L  + N +     
Sbjct: 444 QLTRNSFALVPS------LQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANIND 497

Query: 509 ESLWNCTGLTRVRLEQNRL--------DGDITNALGIYPDLQYIDLGDNQLSGVLTSNWG 560
           + L     L  + L+ N L         G     L     L  ++L  N    +    + 
Sbjct: 498 DMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFK 557

Query: 561 KCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRS-SFLIRLNLR 619
               L    +  N +     +   N   L++L++  N +T         +   L  L++R
Sbjct: 558 DLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMR 617

Query: 620 RNQLS 624
            N   
Sbjct: 618 FNPFD 622

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  266 bits (682), Expect = 4e-80
 Identities = 118/567 (20%), Positives = 199/567 (35%), Gaps = 45/567 (7%)

Query: 114 LILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLE 173
             + D S   LT  +P ++   +++ VL L +N L        +       L +G N + 
Sbjct: 6   HEVADCSHLKLTQ-VPDDL--PTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTIS 62

Query: 174 DPDPVKFKGMASLTDLWLDYNLLEKFPSF-IAECSKLMFLDLSDNLIMGHIPIEQLTHLE 232
             +P   + +  L  L L +N L +      A C+ L  L L  N I   I        +
Sbjct: 63  KLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQK-IKNNPFVKQK 121

Query: 233 NLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSN--LEILEFHEN 290
           NL  L+L+ N               L+ L L  NK+     +E+ + +N  L+ LE   N
Sbjct: 122 NLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSN 181

Query: 291 LFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGF---CANLTFLELSINNLTGSLPLS 347
                 P     + RL  L L +  L  S+ ++L       ++  L LS + L+ +   +
Sbjct: 182 QIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTT 241

Query: 348 LASLR--QISELGISNNQLSEIIS-----------LQLQMNDLSGKLPPEIGLLPKLEYL 394
              L+   ++ L +S N L+ + +             L+ N++       +  L  + YL
Sbjct: 242 FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYL 301

Query: 395 YLFDN---------KFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLS 445
            L  +                     L  L  L + +N   G   +    L +L  LSLS
Sbjct: 302 NLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLS 361

Query: 446 SNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVG 505
           ++  +         +        L  ++ + N  S          G+L  L   +N++  
Sbjct: 362 NSFTSLRTLT--NETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQ 419

Query: 506 PIPESLW-NCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGV--LTSNWGKC 562
            +    W     +  + L  N+      N+  + P LQ + L    L  V    S +   
Sbjct: 420 ELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPL 479

Query: 563 TNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLT--------GKIPAQLFRSSFLI 614
            NL+   +S N I       L  L  L+ LD+  N L         G     L   S L 
Sbjct: 480 RNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLH 539

Query: 615 RLNLRRNQLSDKIPAEIGKLSRLQYLD 641
            LNL  N   +        L  L+ +D
Sbjct: 540 ILNLESNGFDEIPVEVFKDLFELKIID 566

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  255 bits (654), Expect = 4e-76
 Identities = 114/587 (19%), Positives = 189/587 (32%), Gaps = 49/587 (8%)

Query: 84  FSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLL 143
               P L  LNL  N L           T L  L L SN++            +L  L L
Sbjct: 69  CQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL 128

Query: 144 YNNSLTGQIPHQLSNLQNAWLLRIGANYLED--PDPVKFKGMASLTDLWLDYNLLEKF-P 200
            +N L+         L+N   L +  N ++    + +     +SL  L L  N +++F P
Sbjct: 129 SHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSP 188

Query: 201 SFIAECSKLMFLDLSDNLIMGHIP--IEQLTHLENLEYLNLTKNSFEGEIPREIK--TFP 256
                  +L  L L++  +   +   +       ++  L+L+ +              + 
Sbjct: 189 GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWT 248

Query: 257 KLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQ--------- 307
            L  L L  N L     D    L  LE      N    L   SL  L  ++         
Sbjct: 249 NLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFT 308

Query: 308 RLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEI 367
           + ++  A L         +   L  L +  N++ G        L  +  L +SN+  S  
Sbjct: 309 KQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLR 368

Query: 368 I---------------SLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQ-IGN 411
                            L L  N +S         L  LE L L  N+    +  Q    
Sbjct: 369 TLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRG 428

Query: 412 LTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTG--TLPPEIGNSKSDFGPRFL 469
           L N+F++ L+ N +     ++   + SL +L L    L    + P      ++      L
Sbjct: 429 LENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRN------L 482

Query: 470 RNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKL--------VGPIPESLWNCTGLTRVR 521
             +  S NN +      +     L  L    N L         G     L   + L  + 
Sbjct: 483 TILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILN 542

Query: 522 LEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPA 581
           LE N  D           +L+ IDLG N L+ +  S +    +L +  +  N I      
Sbjct: 543 LESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKK 602

Query: 582 ELG-NLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKI 627
             G     L  LD+  N       +  +  +++   +    +LS   
Sbjct: 603 VFGPAFRNLTELDMRFNPFDCTCESIAWFVNWINETHTNIPELSSHY 649

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score =  212 bits (542), Expect = 3e-60
 Identities = 103/438 (23%), Positives = 157/438 (35%), Gaps = 30/438 (6%)

Query: 64  SISEINLANSGLDGTLDG--FDFSAFPNLTALNLNMNNLVGSIPAGIGN--ATKLILLDL 119
            +  + L N  L  +L        A  ++  L+L+ + L  +          T L +LDL
Sbjct: 196 RLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDL 255

Query: 120 SSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNL---------QNAWLLRIGAN 170
           S NNL         +L  L    L  N++     H L  L         ++     I   
Sbjct: 256 SYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLA 315

Query: 171 YLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFI-AECSKLMFLDLSDNLI-MGHIPIEQL 228
            L   D   F+ +  L  L ++ N +    S +      L +L LS++   +  +  E  
Sbjct: 316 SLPKIDDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETF 375

Query: 229 THLEN--LEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIP-DEIGLLSNLEIL 285
             L +  L  LNLTKN               L  L LG N++   +   E   L N+  +
Sbjct: 376 VSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEI 435

Query: 286 EFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNS--SIPKELGFCANLTFLELSINNLTGS 343
               N +  L  +S   +  LQRL L+   L +  S P       NLT L+LS NN+   
Sbjct: 436 YLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANI 495

Query: 344 LPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSG 403
               L  L ++  L + +N L+      L  +   G     +  L  L  L L  N F  
Sbjct: 496 NDDMLEGLEKLEILDLQHNNLAR-----LWKHANPGGPIYFLKGLSHLHILNLESNGFDE 550

Query: 404 PIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSD 463
              +   +L  L  + L  N  N    S   N  SL  L+L  N +T       G +   
Sbjct: 551 IPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPA--- 607

Query: 464 FGPRFLRNVSFSYNNFSG 481
              R L  +   +N F  
Sbjct: 608 --FRNLTELDMRFNPFDC 623

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A* Length = 680

 Score = 91.6 bits (228), Expect = 2e-19
 Identities = 50/197 (25%), Positives = 76/197 (38%), Gaps = 12/197 (6%)

Query: 64  SISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNL--VGSIPAGIGNATKLILLDLSS 121
           +I EI L+ +          F+  P+L  L L    L  V S P+       L +LDLS+
Sbjct: 431 NIFEIYLSYNKYLQLTRN-SFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSN 489

Query: 122 NNLTNPIPPEIGYLSDLRVLLLYNNSLT--------GQIPHQLSNLQNAWLLRIGANYLE 173
           NN+ N     +  L  L +L L +N+L         G   + L  L +  +L + +N  +
Sbjct: 490 NNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFD 549

Query: 174 DPDPVKFKGMASLTDLWLDYNLLEKF-PSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLE 232
           +     FK +  L  + L  N L     S       L  L+L  NLI             
Sbjct: 550 EIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFR 609

Query: 233 NLEYLNLTKNSFEGEIP 249
           NL  L++  N F+    
Sbjct: 610 NLTELDMRFNPFDCTCE 626

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  274 bits (703), Expect = 1e-83
 Identities = 97/652 (14%), Positives = 192/652 (29%), Gaps = 96/652 (14%)

Query: 22  KEAKALLNWKSSLVSSSLPSWTAINSNSGPCNWN-GIQCNEVGSISEINLANSGLDGTLD 80
           K+  AL     +L   +  S     +  G  NWN   + +  G+   ++L ++G      
Sbjct: 30  KDYLALKEIWDALNGKNW-SQQGFGTQPG-ANWNFNKELDMWGAQPGVSLNSNG------ 81

Query: 81  GFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNP----IPPEIGYLS 136
                    +T L+L      G +P  IG  T+L +L L S+          P  I    
Sbjct: 82  --------RVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANM 133

Query: 137 DLRVLLLYNNSLTGQIPHQLSNLQNAWL--LRIGANYLEDPDPVKFKGMASLTDLWLDYN 194
                                    + L    I ++  +       +     T +    N
Sbjct: 134 SDEQKQKMRMHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSN 193

Query: 195 LLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKT 254
            +      +   +KL    + ++  +           E  E  N            +   
Sbjct: 194 NITFVSKAVMRLTKLRQFYMGNSPFVAENI------CEAWENENSEYAQQYKTEDLKWDN 247

Query: 255 FPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGL--------IPSSLGNLRRL 306
              L  +++        +P  +  L  ++++    N               +      ++
Sbjct: 248 LKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKI 307

Query: 307 QRLNLKSAGLNS-SIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLS 365
           Q + +    L +  +   L     L  LE   N L G LP +  S  +++ L ++ NQ++
Sbjct: 308 QIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT 366

Query: 366 EIISLQLQMNDLSGKLPPEI-GLLPKLEYLYLFDNKFSG-PIPQQIGNLTNLFDLQLANN 423
           EI              P    G   ++E L    NK    P      +++ +  +  + N
Sbjct: 367 EI--------------PANFCGFTEQVENLSFAHNKLKYIPNIFDAKSVSVMSAIDFSYN 412

Query: 424 FFNG-------SIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSY 476
                       +  T     ++  ++LS+NQ++                  L +++   
Sbjct: 413 EIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSP------LSSINLMG 466

Query: 477 NNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITN-AL 535
           N  +  +P                        E+  N   LT + L  N+L     +   
Sbjct: 467 NMLTE-IPKNSL----------------KDENENFKNTYLLTSIDLRFNKLTKLSDDFRA 509

Query: 536 GIYPDLQYIDLGDNQLSGVLTSNWGKCTNL------SNFRISGNRIKGGIPAELGNLTYL 589
              P L  IDL  N  S    +     + L      +     GNR     P  +     L
Sbjct: 510 TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSL 568

Query: 590 QNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIPAEIGKLSRLQYLD 641
             L I  N +   +  ++  +  +  L+++ N       + +          
Sbjct: 569 TQLQIGSNDIRK-VNEKITPN--ISVLDIKDNPNISIDLSYVCPYIEAGMYM 617

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697} Length = 636

 Score =  246 bits (631), Expect = 4e-73
 Identities = 88/651 (13%), Positives = 179/651 (27%), Gaps = 111/651 (17%)

Query: 22  KEAKALLNWKSSLVSSSLPS-WTAINSNSGPCNWNGIQCNEVGSISEINLANSGLDGT-- 78
            +A    NW      +   + W             G+  N  G ++ ++L   G  G   
Sbjct: 39  WDALNGKNWSQQGFGTQPGANWNFNKELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVP 98

Query: 79  ------------------LDGFDFSAFP-------NLTALNLNMNNLVGSIPAGIGNA-- 111
                                 +    P       +         +   +          
Sbjct: 99  DAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQKQKMRMHYQKTFVDYDPREDF 158

Query: 112 TKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANY 171
           + LI   ++S+     I            +   +N++T  +   +  L       +G + 
Sbjct: 159 SDLIKDCINSDPQQKSIKKSSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSP 217

Query: 172 LEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHL 231
               +  +     +           +           L  +++ +   +  +P   L  L
Sbjct: 218 FVAENICEAWENENSEYA----QQYKTEDLKWDNLKDLTDVEVYNCPNLTKLP-TFLKAL 272

Query: 232 ENLEYLNLTKNSF--------EGEIPREIKTFPKLRHLKLGQNKLT-GTIPDEIGLLSNL 282
             ++ +N+  N          + +   +     K++ + +G N L    +   +  +  L
Sbjct: 273 PEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPVETSLQKMKKL 332

Query: 283 EILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTG 342
            +LE   N   G +P+  G+  +L  LNL    +        GF   +  L  + N L  
Sbjct: 333 GMLECLYNQLEGKLPA-FGSEIKLASLNLAYNQITEIPANFCGFTEQVENLSFAHNKLKY 391

Query: 343 -SLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKF 401
                   S+  +S +  S N++  +             L P       +  + L +N+ 
Sbjct: 392 IPNIFDAKSVSVMSAIDFSYNEIGSVDGKNF------DPLDPTPFKGINVSSINLSNNQI 445

Query: 402 SGPIPQQIGNLTNLFDLQLANNFFNG-------SIPSTIGNLSSLVKLSLSSNQLTGTLP 454
           S    +     + L  + L  N                  N   L  + L  N+LT  L 
Sbjct: 446 SKFPKELFSTGSPLSSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLTK-LS 504

Query: 455 PEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNC 514
            +   +       +L  +  SYN+FS                           P    N 
Sbjct: 505 DDFRATTL----PYLVGIDLSYNSFSK-------------------------FPTQPLNS 535

Query: 515 TGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNR 574
           + L    +   R                  D   N+           C +L+  +I  N 
Sbjct: 536 STLKGFGIRNQR------------------DAQGNRTLREWPEGITLCPSLTQLQIGSND 577

Query: 575 IKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSD 625
           I+  +  ++     +  LDI DN       + +          L  ++  D
Sbjct: 578 IRK-VNEKI--TPNISVLDIKDNPNISIDLSYVCPYIEAGMYMLFYDKTQD 625

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  239 bits (613), Expect = 7e-71
 Identities = 110/549 (20%), Positives = 175/549 (31%), Gaps = 34/549 (6%)

Query: 87  FPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNN 146
             +   L+L+ N L         +  +L +LDLS   +          LS L  L+L  N
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 147 SLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLE--KFPSFIA 204
            +        S L +   L      L   +      + +L +L + +NL++  K P + +
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 205 ECSKLMFLDLSDNLIMGHIP--IEQLTHLENLE-YLNLTKNSFEGEIPREIKTFPKLRHL 261
             + L  LDLS N I       +  L  +  L   L+L+ N      P   K   +L  L
Sbjct: 147 NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEI-RLHKL 205

Query: 262 KLGQNKLTGTIPDEIGL-LSNLEILEFHENLFHG------LIPSSLGNLRRLQRLNLKSA 314
            L  N  +  +       L+ LE+       F           S+L  L  L     + A
Sbjct: 206 TLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 265

Query: 315 GLNSS---IPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISL- 370
            L+     I        N++   L    +      S         L + N +  +  +L 
Sbjct: 266 YLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSY--NFGWQHLELVNCKFGQFPTLK 323

Query: 371 -----QLQMNDLSGKLPPEIGLLPKLEYLYLFDNK--FSGPIPQQIGNLTNLFDLQLANN 423
                +L      G        LP LE+L L  N   F G   Q     T+L  L L+ N
Sbjct: 324 LKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383

Query: 424 FFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKL 483
                + S    L  L  L    + L       +         R L  +  S+ +     
Sbjct: 384 GVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL-----SLRNLIYLDISHTHTRVAF 437

Query: 484 PPGICRGGNLIYLTANVNKLVGPI-PESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQ 542
                   +L  L    N       P+       LT + L Q +L+     A      LQ
Sbjct: 438 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497

Query: 543 YIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNL-TYLQNLDIFDNQLTG 601
            +++  N    + T  +    +L     S N I      EL +  + L  L++  N    
Sbjct: 498 VLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFAC 557

Query: 602 KIPAQLFRS 610
               Q F  
Sbjct: 558 TCEHQSFLQ 566

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  189 bits (483), Expect = 1e-52
 Identities = 85/451 (18%), Positives = 146/451 (32%), Gaps = 45/451 (9%)

Query: 233 NLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLF 292
           + + L+L+ N           +FP+L+ L L + ++          LS+L  L    N  
Sbjct: 29  STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPI 88

Query: 293 HGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTG-SLPLSLASL 351
             L   +   L  LQ+L      L S     +G    L  L ++ N +    LP   ++L
Sbjct: 89  QSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNL 148

Query: 352 RQISELGISNNQLSEII---------------SLQLQMNDLSGKLPPEIGLLPKLEYLYL 396
             +  L +S+N++  I                SL L +N ++  + P      +L  L L
Sbjct: 149 TNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNF-IQPGAFKEIRLHKLTL 207

Query: 397 FDNKFSGPIPQQ-IGNLTNLFDLQLANNFFNGSI---PSTIGNLSSLVKLSLSSNQLTGT 452
            +N  S  + +  I  L  L   +L    F             L  L  L++   +L   
Sbjct: 208 RNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA-Y 266

Query: 453 LPPEIGNSKSDFGP-RFLRNVSFSYNNFSGKLPPGICRGGNLIYLTAN------------ 499
           L   + +    F     + + S                G   + L               
Sbjct: 267 LDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKS 326

Query: 500 -----VNKLVGPIPESLWNCTGLTRVRLEQNRLD--GDITNALGIYPDLQYIDLGDNQLS 552
                     G    S  +   L  + L +N L   G  + +      L+Y+DL  N + 
Sbjct: 327 LKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386

Query: 553 GVLTSNWGKCTNLSNFRISGNRIKGGIPAE-LGNLTYLQNLDIFDNQLTGKIPAQLFRSS 611
             ++SN+     L +     + +K         +L  L  LDI                S
Sbjct: 387 T-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLS 445

Query: 612 FLIRLNLRRNQLSDKIPAEI-GKLSRLQYLD 641
            L  L +  N   +    +I  +L  L +LD
Sbjct: 446 SLEVLKMAGNSFQENFLPDIFTELRNLTFLD 476

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  149 bits (378), Expect = 2e-38
 Identities = 76/428 (17%), Positives = 126/428 (29%), Gaps = 56/428 (13%)

Query: 46  NSNSGPCNWNGIQCNEVGSISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNL----- 100
           N +S       IQ      +  + L     +G L+ FD SA   L  L +    L     
Sbjct: 210 NFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDY 269

Query: 101 -VGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNL 159
            +  I       T +    L S  +         Y    + L L N         +L +L
Sbjct: 270 YLDDIIDLFNCLTNVSSFSLVSVTIERVKD--FSYNFGWQHLELVNCKFGQFPTLKLKSL 327

Query: 160 QNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLI 219
           +                            L    N      S + +   L FLDLS N +
Sbjct: 328 KR---------------------------LTFTSNKGGNAFSEV-DLPSLEFLDLSRNGL 359

Query: 220 -MGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEI-G 277
                  +      +L+YL+L+ N     +        +L HL    + L       +  
Sbjct: 360 SFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 418

Query: 278 LLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKE-LGFCANLTFLELS 336
            L NL  L+                L  L+ L +       +   +      NLTFL+LS
Sbjct: 419 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 478

Query: 337 INNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYL 396
              L    P +  SL  +  L +S+N    +                    L  L+ L  
Sbjct: 479 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLD-------------TFPYKCLNSLQVLDY 525

Query: 397 FDNKFSGPIPQQIGNL-TNLFDLQLANNFFNGSIPST--IGNLSSLVKLSLSSNQLTGTL 453
             N       Q++ +  ++L  L L  N F  +      +  +    +L +   ++    
Sbjct: 526 SLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLVEVERMECAT 585

Query: 454 PPEIGNSK 461
           P +     
Sbjct: 586 PSDKQGMP 593

>3fxi_A TLR4, htoll, TOLL-like receptor 4; leucine rich repeat, glycoprotein, immune response, inflamma response, innate immunity, membrane, receptor; HET: PA1 KDO GMH FTT DAO MYR NAG GCS; 3.10A {Homo sapiens} Length = 605

 Score =  127 bits (322), Expect = 4e-31
 Identities = 50/284 (17%), Positives = 93/284 (32%), Gaps = 10/284 (3%)

Query: 79  LDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLT--NPIPPEIGYLS 136
              F      +L    L   +  G       +   L  LDLS N L+            +
Sbjct: 316 FGQFPTLKLKSLK--RLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTT 373

Query: 137 DLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVK-FKGMASLTDLWLDYNL 195
            L+ L L  N +   +      L+    L    + L+       F  + +L  L + +  
Sbjct: 374 SLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 432

Query: 196 LE-KFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKT 254
               F       S L  L ++ N    +   +  T L NL +L+L++   E   P    +
Sbjct: 433 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 492

Query: 255 FPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRR-LQRLNLKS 313
              L+ L +  N            L++L++L++  N         L +    L  LNL  
Sbjct: 493 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQ 552

Query: 314 AGLNSSIPKE--LGFCANLTFLELSINNLTGSLPLSLASLRQIS 355
                +   +  L +  +   L + +  +  + P     +  +S
Sbjct: 553 NDFACTCEHQSFLQWIKDQRQLLVEVERMECATPSDKQGMPVLS 596

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  241 bits (616), Expect = 2e-69
 Identities = 94/584 (16%), Positives = 175/584 (29%), Gaps = 66/584 (11%)

Query: 93  LNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTG-- 150
            N  ++         + N  ++  L L+       +P  IG L++L+VL    +S T   
Sbjct: 304 FNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSG 363

Query: 151 QIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLM 210
           ++        +    R     +     +       L    L  + + + P       K  
Sbjct: 364 RLFGDEELTPDMSEERKHRIRMHYK-KMFLDYDQRLNLSDLLQDAINRNPEMK-PIKKDS 421

Query: 211 FLDLSDNLIMGH------IPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLG 264
            + L D  I         I  + +  L  L+ +    + F  +                 
Sbjct: 422 RISLKDTQIGNLTNRITFIS-KAIQRLTKLQIIYFANSPFTYDNIAVD-----WEDANSD 475

Query: 265 QNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNL---------KSAG 315
             K           L +L  +E +       +P  L +L  LQ LN+         +   
Sbjct: 476 YAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKA 535

Query: 316 LNSSIPKELGFCANLTFLELSINNLTG-SLPLSLASLRQISELGISNNQLSEIISLQLQM 374
             + +  +      +    +  NNL       SL  + ++  L   +N++  +       
Sbjct: 536 DWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHL------- 588

Query: 375 NDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIG-NLTNLFDLQLANNFFNGSIPST- 432
                      G   KL  L L  N+    IP+        +  L  ++N     IP+  
Sbjct: 589 --------EAFGTNVKLTDLKLDYNQIEE-IPEDFCAFTDQVEGLGFSHNKLK-YIPNIF 638

Query: 433 -IGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGG 491
              ++  +  +  S N++       I  S  D+       V+ SYN            G 
Sbjct: 639 NAKSVYVMGSVDFSYNKIGS-EGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGS 697

Query: 492 NLIYLTANVNKL-------VGPIPESLWNCTGLTRVRLEQNRLDG-DITNALGIYPDLQY 543
            +  +  + N +       + P   +  N   LT + L  N+L            P L  
Sbjct: 698 PISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTSLSDDFRATTLPYLSN 757

Query: 544 IDLGDNQLSGVLTSNWGKCTNL------SNFRISGNRIKGGIPAELGNLTYLQNLDIFDN 597
           +D+  N  S    +     + L            GNRI    P  +     L  L I  N
Sbjct: 758 MDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN 816

Query: 598 QLTGKIPAQLFRSSFLIRLNLRRNQLSD-KIPAEIGKLSRLQYL 640
            +  K+  +L     L  L++  N      + +    +    Y+
Sbjct: 817 DIR-KVDEKLTPQ--LYILDIADNPNISIDVTSVCPYIEAGMYV 857

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  232 bits (593), Expect = 3e-66
 Identities = 100/645 (15%), Positives = 184/645 (28%), Gaps = 89/645 (13%)

Query: 22  KEAKALLNWKSSLVSSSLPSWTAINSNSG-PCNWN-GIQCNEVGSISEINLANSGLDGTL 79
           K+ KAL     +L   +   ++   +N+    NWN   + +  G    ++L N+G     
Sbjct: 269 KDYKALKAIWEALDGKNWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNG----- 323

Query: 80  DGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLR 139
                     +T L+L      G +P  IG  T+L +L   +++ T              
Sbjct: 324 ---------RVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPD 374

Query: 140 VLLLYNNSLTGQIP----HQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLD--Y 193
           +     + +              L  + LL+   N   +  P+K     SL D  +    
Sbjct: 375 MSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIGNLT 434

Query: 194 NLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIK 253
           N +      I   +KL  +  +++               + E  N               
Sbjct: 435 NRITFISKAIQRLTKLQIIYFANSPFTYDNI------AVDWEDANSDYAKQYENEELSWS 488

Query: 254 TFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGL---------IPSSLGNLR 304
               L  ++L        +PD +  L  L+ L    N              +        
Sbjct: 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGP 548

Query: 305 RLQRLNLKSAGLNSSIPKELGF--CANLTFLELSINNLTGSLPLSLASLRQISELGISNN 362
           ++Q   +    L    P          L  L+   N +   L  +  +  ++++L +  N
Sbjct: 549 KIQIFYMGYNNL-EEFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYN 605

Query: 363 QLSEI-----------ISLQLQMNDLSGKLPPEIGL--LPKLEYLYLFDNKFSG-----P 404
           Q+ EI             L    N L   +P       +  +  +    NK         
Sbjct: 606 QIEEIPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNIS 664

Query: 405 IPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDF 464
                    N   + L+ N             S +  + LS+N +T ++P      K   
Sbjct: 665 CSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGN 723

Query: 465 --GPRFLRNVSFSYNNFSGKLPPGICRGG--NLIYLTANVNKLVGPIPESLWNCTGLTRV 520
                 L  +   +N  +  L           L  +  + N      P    N + L   
Sbjct: 724 YKNTYLLTTIDLRFNKLTS-LSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAF 781

Query: 521 RLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIP 580
            +   R                  D   N++     +    C +L   +I  N I+  + 
Sbjct: 782 GIRHQR------------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDIRK-VD 822

Query: 581 AELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSD 625
            +L     L  LDI DN         +          L  ++  D
Sbjct: 823 EKL--TPQLYILDIADNPNISIDVTSVCPYIEAGMYVLLYDKTQD 865

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  185 bits (471), Expect = 9e-50
 Identities = 60/449 (13%), Positives = 130/449 (28%), Gaps = 54/449 (12%)

Query: 221 GHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGL-L 279
           G  P   L +   +  L+L     +G +P  I    +L+ L  G +  T +        L
Sbjct: 312 GDQPGVDLDNNGRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEEL 371

Query: 280 SNLEILEFHENLFHGLIPSSLGNLRRLQRLNL---KSAGLNSSIPKELGFCANLTFLELS 336
           +     E    +        L   +RL   +L            P +     +L   ++ 
Sbjct: 372 TPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDSRISLKDTQIG 431

Query: 337 -INNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLY 395
            + N    +  ++  L ++  +  +N+  +                   +          
Sbjct: 432 NLTNRITFISKAIQRLTKLQIIYFANSPFTY--------------DNIAVDWEDAN---- 473

Query: 396 LFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTG---- 451
               K          NL +L D++L N      +P  + +L  L  L+++ N+       
Sbjct: 474 SDYAKQYENEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQL 533

Query: 452 -----TLPPEIGNSKSDFGPRFLRNVSFSYNNFSG-KLPPGICRGGNLIYLTANVNKLVG 505
                 L  +            ++     YNN         + +   L  L    NK+  
Sbjct: 534 KADWTRLADDEDTGPK------IQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR- 586

Query: 506 PIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTS-NWGKCTN 564
              E+      LT ++L+ N+++    +       ++ +    N+L  +    N      
Sbjct: 587 -HLEAFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYV 645

Query: 565 LSNFRISGNRIKG-----GIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLR 619
           + +   S N+I           +         + +  N++           S +  + L 
Sbjct: 646 MGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILS 705

Query: 620 RNQLSD-------KIPAEIGKLSRLQYLD 641
            N ++                   L  +D
Sbjct: 706 NNLMTSIPENSLKPKDGNYKNTYLLTTID 734

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron} Length = 876

 Score =  132 bits (333), Expect = 3e-32
 Identities = 53/327 (16%), Positives = 107/327 (32%), Gaps = 32/327 (9%)

Query: 64  SISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNN 123
            I    +  + L+             L  L+   N +   + A  G   KL  L L  N 
Sbjct: 549 KIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVR-HLEA-FGTNVKLTDLKLDYNQ 606

Query: 124 LTNPIPPEIGY-LSDLRVLLLYNNSLTGQIPH--QLSNLQNAWLLRIGANYLEDPDPVKF 180
           +   IP +       +  L   +N L   IP+     ++     +    N +        
Sbjct: 607 IEE-IPEDFCAFTDQVEGLGFSHNKLKY-IPNIFNAKSVYVMGSVDFSYNKIGSEGRNIS 664

Query: 181 KGM-----ASLTDLWLDYNLLEKFP-SFIAECSKLMFLDLSDNLI------MGHIPIEQL 228
             M      + + + L YN ++KFP    A  S +  + LS+NL+               
Sbjct: 665 CSMDDYKGINASTVTLSYNEIQKFPTELFATGSPISTIILSNNLMTSIPENSLKPKDGNY 724

Query: 229 THLENLEYLNLTKNSFEGEIPREIK--TFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILE 286
            +   L  ++L  N     +  + +  T P L ++ +  N  + + P +    S L+   
Sbjct: 725 KNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFS-SFPTQPLNSSQLKAFG 782

Query: 287 FHENL------FHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNL 340
                           P+ +     L +L + S  +   + ++L     L  L+++ N  
Sbjct: 783 IRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKL--TPQLYILDIADNPN 839

Query: 341 TGSLPLSLASLRQISELGISNNQLSEI 367
                 S+    +     +  ++  +I
Sbjct: 840 ISIDVTSVCPYIEAGMYVLLYDKTQDI 866

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  229 bits (585), Expect = 6e-67
 Identities = 103/548 (18%), Positives = 172/548 (31%), Gaps = 34/548 (6%)

Query: 117 LDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPD 176
            +  +  L   IP  +   +    L    N L        S L N   L +    +    
Sbjct: 17  YNCENLGLNE-IPGTL--PNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIH 73

Query: 177 PVKFKGMASLTDLWLDYNLLEKFPSFI-AECSKLMFLDLSDNLIMGHIPIEQLTHLENLE 235
              F+    L  L L  N L        +    L  L      I   I    L + + LE
Sbjct: 74  EDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFIQTGISS-IDFIPLHNQKTLE 132

Query: 236 YLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFH-ENLFHG 294
            L L  N        +     KL+ L    N +     +++  L     L  +       
Sbjct: 133 SLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDIA 192

Query: 295 LIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCA--NLTFLELSINNLTGSLPLSLASLR 352
            I     +    Q LN         I K L      +L        +     P     L 
Sbjct: 193 GIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLC 252

Query: 353 QIS--ELGISNNQLSEIIS-----------LQLQMNDLSGKLPPEIGLLPKLEYLYLFDN 399
           ++S   + +  +    I S           L L    LS +LP  +  L  L+ L L  N
Sbjct: 253 EMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSAN 311

Query: 400 KFSGPIPQQIGNLTNLFDLQLANNFFNGSIPS-TIGNLSSLVKLSLSSNQLTGTLPPEIG 458
           KF         N  +L  L +  N     + +  + NL +L +L LS + +  +      
Sbjct: 312 KFENLCQISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDC---- 367

Query: 459 NSKSDFGPRFLRNVSFSYNNFSGKLPPGICRG-GNLIYLTANVNKLVGPIPESLW-NCTG 516
            +        L++++ SYN     L     +    L  L     +L     +S + N   
Sbjct: 368 CNLQLRNLSHLQSLNLSYNEPLS-LKTEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHL 426

Query: 517 LTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFR---ISGN 573
           L  + L  + LD          P LQ+++L  N               L       +S  
Sbjct: 427 LKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC 486

Query: 574 RIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIPAEIGK 633
            +         +L  + ++D+  N+LT     +       I LNL  N +S  +P+ +  
Sbjct: 487 DLSSIDQHAFTSLKMMNHVDLSHNRLTS-SSIEALSHLKGIYLNLASNHISIILPSLLPI 545

Query: 634 LSRLQYLD 641
           LS+ + ++
Sbjct: 546 LSQQRTIN 553

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A* Length = 606

 Score =  177 bits (451), Expect = 4e-48
 Identities = 98/547 (17%), Positives = 182/547 (33%), Gaps = 58/547 (10%)

Query: 64  SISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNN 123
           ++  +    +G+   +D         L +L L  N++            KL +LD  +N 
Sbjct: 106 ALKHLFFIQTGISS-IDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNA 164

Query: 124 LTNPIPPEIGYLSDLRVLLLY--NNSLTGQIPHQLSNLQNAWLLRIGANYL--EDPDPVK 179
           +      ++  L     L L    N + G I     +      L  G           +K
Sbjct: 165 IHYLSKEDMSSLQQATNLSLNLNGNDIAG-IEPGAFDSAVFQSLNFGGTQNLLVIFKGLK 223

Query: 180 FKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNL 239
              + SL     +    E            +F  L +                ++E +NL
Sbjct: 224 NSTIQSLWLGTFEDMDDEDISP-------AVFEGLCEM---------------SVESINL 261

Query: 240 TKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSS 299
            K+ F          F  L+ L L    L+  +P  +  LS L+ L    N F  L   S
Sbjct: 262 QKHYFFNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQIS 320

Query: 300 LGNLRRLQRLNLKSAGLNSSIPKE-LGFCANLTFLELSINNLTGS--LPLSLASLRQISE 356
             N   L  L++K       +    L    NL  L+LS +++  S    L L +L  +  
Sbjct: 321 ASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQS 380

Query: 357 LGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQ-QIGNLTNL 415
           L +S N+   +                     P+LE L L   +      Q    NL  L
Sbjct: 381 LNLSYNEPLSLK-------------TEAFKECPQLELLDLAFTRLKVKDAQSPFQNLHLL 427

Query: 416 FDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFS 475
             L L+++  + S       L +L  L+L  N        +  + +       L  +  S
Sbjct: 428 KVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQ---TLGRLEILVLS 484

Query: 476 YNNFSGKLPPGICRG-GNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNA 534
           + + S  +          + ++  + N+L     E+L +  G+  + L  N +   + + 
Sbjct: 485 FCDLSS-IDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGIY-LNLASNHISIILPSL 542

Query: 535 LGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNF-RISGNRIKGGIPAELGNLTYLQNLD 593
           L I    + I+L  N L    ++ +        + + +  +++        N   L+ + 
Sbjct: 543 LPILSQQRTINLRQNPLDCTCSNIY-----FLEWYKENMQKLEDTEDTLCENPPLLRGVR 597

Query: 594 IFDNQLT 600
           + D  L+
Sbjct: 598 LSDVTLS 604

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  214 bits (547), Expect = 2e-64
 Identities = 75/314 (23%), Positives = 124/314 (39%), Gaps = 32/314 (10%)

Query: 192 DYNLLEKFPSFIAECSKLM----FLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGE 247
           D   L +    +   + L       D  +   +G +  +  T    +  L+L+  +    
Sbjct: 7   DKQALLQIKKDLGNPTTLSSWLPTTDCCNRTWLGVLC-DTDTQTYRVNNLDLSGLNLPKP 65

Query: 248 --IPREIKTFPKLRHLKL-GQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLR 304
             IP  +   P L  L + G N L G IP  I  L+ L  L        G IP  L  ++
Sbjct: 66  YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125

Query: 305 RLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQL 364
            L  L+     L+ ++P  +    NL  +    N ++G++P S  S  ++          
Sbjct: 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFT-------- 177

Query: 365 SEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNF 424
               S+ +  N L+GK+PP    L  L ++ L  N   G      G+  N   + LA N 
Sbjct: 178 ----SMTISRNRLTGKIPPTFANL-NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNS 232

Query: 425 FNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLP 484
               +   +G   +L  L L +N++ GTLP  +   K       L +++ S+NN  G++P
Sbjct: 233 LAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKF------LHSLNVSFNNLCGEIP 285

Query: 485 PGICRGGNLIYLTA 498
                GGNL     
Sbjct: 286 Q----GGNLQRFDV 295

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  210 bits (537), Expect = 4e-63
 Identities = 79/315 (25%), Positives = 135/315 (42%), Gaps = 26/315 (8%)

Query: 296 IPSSLGNLRRLQRLNLKSAGLNSS----IPKELGFCANLTFLELSINNLTGS--LPLSLA 349
           I   LGN   L      +   N +    +         +  L+LS  NL     +P SLA
Sbjct: 14  IKKDLGNPTTLSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLA 73

Query: 350 SLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQI 409
           +L  ++ L I               N+L G +PP I  L +L YLY+     SG IP  +
Sbjct: 74  NLPYLNFLYIGGI------------NNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFL 121

Query: 410 GNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFL 469
             +  L  L  + N  +G++P +I +L +LV ++   N+++G +P   G+          
Sbjct: 122 SQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK-----LF 176

Query: 470 RNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDG 529
            +++ S N  +GK+PP      NL ++  + N L G       +     ++ L +N L  
Sbjct: 177 TSMTISRNRLTGKIPPTFAN-LNLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAF 235

Query: 530 DITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYL 589
           D+   +G+  +L  +DL +N++ G L     +   L +  +S N + G IP + GNL   
Sbjct: 236 DLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRF 293

Query: 590 QNLDIFDNQLTGKIP 604
                 +N+     P
Sbjct: 294 DVSAYANNKCLCGSP 308

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  207 bits (530), Expect = 4e-62
 Identities = 75/307 (24%), Positives = 117/307 (38%), Gaps = 26/307 (8%)

Query: 278 LLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLN--SSIPKELGFCANLTFLEL 335
           L S L   +     + G++  +     R+  L+L    L     IP  L     L FL +
Sbjct: 24  LSSWLPTTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYI 83

Query: 336 S-INNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYL 394
             INNL G +P ++A L Q+  L I++  +S             G +P  +  +  L  L
Sbjct: 84  GGINNLVGPIPPAIAKLTQLHYLYITHTNVS-------------GAIPDFLSQIKTLVTL 130

Query: 395 YLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVK-LSLSSNQLTGTL 453
               N  SG +P  I +L NL  +    N  +G+IP + G+ S L   +++S N+LTG +
Sbjct: 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKI 190

Query: 454 PPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWN 513
           PP   N         L  V  S N   G          N   +    N L   +   +  
Sbjct: 191 PPTFANLN-------LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGL 242

Query: 514 CTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGN 573
              L  + L  NR+ G +   L     L  +++  N L G +    G          + N
Sbjct: 243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANN 301

Query: 574 RIKGGIP 580
           +   G P
Sbjct: 302 KCLCGSP 308

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  206 bits (527), Expect = 1e-61
 Identities = 78/309 (25%), Positives = 124/309 (40%), Gaps = 46/309 (14%)

Query: 335 LSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYL 394
                  G L  +     +++ L +S   L                +P  +  LP L +L
Sbjct: 33  CCNRTWLGVLCDTDTQTYRVNNLDLSGLNLP-----------KPYPIPSSLANLPYLNFL 81

Query: 395 YLFD-NKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTL 453
           Y+   N   GPIP  I  LT L  L + +   +G+IP  +  + +LV L  S N L+GTL
Sbjct: 82  YIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTL 141

Query: 454 PPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLI-YLTANVNKLVGPIPESLW 512
           PP I +  +      L  ++F  N  SG +P        L   +T + N+L G IP +  
Sbjct: 142 PPSISSLPN------LVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFA 195

Query: 513 NCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISG 572
           N                          +L ++DL  N L G  +  +G   N     ++ 
Sbjct: 196 NL-------------------------NLAFVDLSRNMLEGDASVLFGSDKNTQKIHLAK 230

Query: 573 NRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIPAEIG 632
           N +   +  ++G    L  LD+ +N++ G +P  L +  FL  LN+  N L  +IP + G
Sbjct: 231 NSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGG 288

Query: 633 KLSRLQYLD 641
            L R     
Sbjct: 289 NLQRFDVSA 297

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score =  184 bits (470), Expect = 2e-53
 Identities = 72/320 (22%), Positives = 119/320 (37%), Gaps = 59/320 (18%)

Query: 23  EAKALLNWKSSLVS-SSLPSWTAINSNSGPCNWNGIQCNEVG---SISEINLANSGLDGT 78
           + +ALL  K  L + ++L SW    ++     W G+ C+       ++ ++L+   L   
Sbjct: 7   DKQALLQIKKDLGNPTTLSSWLP-TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKP 65

Query: 79  ------------LDGFDFSAFPNLT--------------ALNLNMNNLVGSIPAGIGNAT 112
                       L+        NL                L +   N+ G+IP  +    
Sbjct: 66  YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125

Query: 113 KLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYL 172
            L+ LD S N L+  +PP I  L +L  +    N ++G IP    +              
Sbjct: 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK----------- 174

Query: 173 EDPDPVKFKGMASLTDLWLDYNLLE-KFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHL 231
                         T + +  N L  K P   A  + L F+DLS N++ G   +      
Sbjct: 175 ------------LFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVL-FGSD 220

Query: 232 ENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENL 291
           +N + ++L KNS   ++  ++     L  L L  N++ GT+P  +  L  L  L    N 
Sbjct: 221 KNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279

Query: 292 FHGLIPSSLGNLRRLQRLNL 311
             G IP   GNL+R      
Sbjct: 280 LCGEIPQG-GNLQRFDVSAY 298

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8 Length = 313

 Score = 60.6 bits (148), Expect = 4e-10
 Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 3/90 (3%)

Query: 64  SISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNN 123
           +  +I+LA + L   L         NL  L+L  N + G++P G+     L  L++S NN
Sbjct: 222 NTQKIHLAKNSLAFDLG--KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNN 279

Query: 124 LTNPIPPEIGYLSDLRVLLLYNNSLTGQIP 153
           L   IP + G L    V    NN      P
Sbjct: 280 LCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  211 bits (538), Expect = 3e-60
 Identities = 106/557 (19%), Positives = 185/557 (33%), Gaps = 48/557 (8%)

Query: 87  FPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNN 146
             +   ++L+ N L         N ++L  LDLS   +          L  L  L+L  N
Sbjct: 31  PSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN 90

Query: 147 SLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLE--KFPSFIA 204
            +    P   S L +   L      L   +      + +L  L + +N +   K P++ +
Sbjct: 91  PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFS 150

Query: 205 ECSKLMFLDLSDNLIMGHIPIEQLTHLENL----EYLNLTKNSFEGEIPREIKTFPKLRH 260
             + L+ +DLS N I   I +  L  L         L+++ N  +  I  +     KL  
Sbjct: 151 NLTNLVHVDLSYNYIQ-TITVNDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGIKLHE 208

Query: 261 LKLGQNKLTGTIPDEIGL-LSNLEILEFHENLFHG------LIPSSLGNLRRLQRLNLKS 313
           L L  N  +  I       L+ L +       F          PS +  L  +     + 
Sbjct: 209 LTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL 268

Query: 314 AGLN--SSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQ 371
              N  S    +    AN++ + L+  ++       +    +   L I   QL +  +L 
Sbjct: 269 TYTNDFSDDIVKFHCLANVSAMSLAGVSIKY--LEDVPKHFKWQSLSIIRCQLKQFPTLD 326

Query: 372 LQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPS 431
                           LP L+ L L  NK S  I  +   L +L  L L+ N  + S   
Sbjct: 327 ----------------LPFLKSLTLTMNKGS--ISFKKVALPSLSYLDLSRNALSFSGCC 368

Query: 432 TIGNL--SSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICR 489
           +  +L  +SL  L LS N     +       +       L+++ F ++            
Sbjct: 369 SYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEE------LQHLDFQHSTLKRVTEFSAFL 421

Query: 490 G-GNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDI-TNALGIYPDLQYIDLG 547
               L+YL  +               T L  +++  N    +  +N      +L ++DL 
Sbjct: 422 SLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLS 481

Query: 548 DNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQL 607
             QL  +    +     L    +S N +     +    L  L  LD   N++        
Sbjct: 482 KCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIETSKGILQ 541

Query: 608 FRSSFLIRLNLRRNQLS 624
                L   NL  N ++
Sbjct: 542 HFPKSLAFFNLTNNSVA 558

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  192 bits (490), Expect = 2e-53
 Identities = 89/524 (16%), Positives = 162/524 (30%), Gaps = 41/524 (7%)

Query: 67  EINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTN 126
            ++L+   ++  ++   +    +L+ L L  N +    P      T L  L      L +
Sbjct: 60  WLDLSRCEIET-IEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLAS 118

Query: 127 PIPPEIGYLSDLRVLLLYNNSLTG-QIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMAS 185
                IG L  L+ L + +N +   ++P   SNL N   + +  NY++       + +  
Sbjct: 119 LESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRE 178

Query: 186 LTD----LWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTK 241
                  L +  N ++       +  KL  L L  N    +I    L +L  L    L  
Sbjct: 179 NPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLIL 238

Query: 242 NSFEGEIPREI---KTFPKLRHLK-----LGQNKLTGTIPDEIGLLSNLEILEFHENLFH 293
             F+ E   EI        L  +      L           +   L+N+  +        
Sbjct: 239 GEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIK 298

Query: 294 GLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQ 353
            L    +    + Q L++    L      +L     L  L L++N    S+     +L  
Sbjct: 299 YL--EDVPKHFKWQSLSIIRCQLKQFPTLDLP---FLKSLTLTMNKG--SISFKKVALPS 351

Query: 354 ISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLT 413
           +S L +S N LS                         L +L L  N     +      L 
Sbjct: 352 LSYLDLSRNALSFSGCCSYS-----------DLGTNSLRHLDLSFNGAII-MSANFMGLE 399

Query: 414 NLFDLQLANNFFNGSIP-STIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNV 472
            L  L   ++        S   +L  L+ L +S                S      L  +
Sbjct: 400 ELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTS------LNTL 453

Query: 473 SFSYNNFSGKLPPGICRG-GNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDI 531
             + N+F       +     NL +L  +  +L             L  + +  N L    
Sbjct: 454 KMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLD 513

Query: 532 TNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRI 575
           ++       L  +D   N++            +L+ F ++ N +
Sbjct: 514 SSHYNQLYSLSTLDCSFNRIETSKGILQHFPKSLAFFNLTNNSV 557

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  182 bits (464), Expect = 5e-50
 Identities = 92/547 (16%), Positives = 166/547 (30%), Gaps = 52/547 (9%)

Query: 102 GSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQN 161
           GS+   I     +         L+  +P +I   S  + + L  N L     +  SN   
Sbjct: 2   GSLNPCIEVVPNITY-QCMDQKLSK-VPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSE 57

Query: 162 AWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKF-PSFIAECSKLMFLDLSDNLIM 220
              L +    +E  +   + G+  L++L L  N ++ F P   +  + L  L   +  + 
Sbjct: 58  LQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVAVETKLA 117

Query: 221 GHIPIEQLTHLENLEYLNLTKNSFEG-EIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLL 279
             +    +  L  L+ LN+  N     ++P        L H+ L  N +     +++  L
Sbjct: 118 S-LESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFL 176

Query: 280 SNLEILEFHENLFH---GLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELS 336
                +    ++       I        +L  L L+    +S+I K      NL  L   
Sbjct: 177 RENPQVNLSLDMSLNPIDFIQDQAFQGIKLHELTLRGNFNSSNIMK--TCLQNLAGLH-- 232

Query: 337 INNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYL 396
           ++ L         +L       +       I   +L   +       +   L  +  + L
Sbjct: 233 VHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSL 292

Query: 397 FDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPE 456
                       +        L +         P+   +L  L  L+L+ N+ + +    
Sbjct: 293 AGVSIKYLED--VPKHFKWQSLSIIRCQLK-QFPT--LDLPFLKSLTLTMNKGSISF--- 344

Query: 457 IGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTG 516
                       L  +  S N  S                        G    S      
Sbjct: 345 -----KKVALPSLSYLDLSRNALSF----------------------SGCCSYSDLGTNS 377

Query: 517 LTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVL-TSNWGKCTNLSNFRISGNRI 575
           L  + L  N     ++       +LQ++D   + L  V   S +     L    IS    
Sbjct: 378 LRHLDLSFNGA-IIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNT 436

Query: 576 KGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRS-SFLIRLNLRRNQLSDKIPAEIGKL 634
           K         LT L  L +  N       + +F + + L  L+L + QL          L
Sbjct: 437 KIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTL 496

Query: 635 SRLQYLD 641
            RLQ L+
Sbjct: 497 HRLQLLN 503

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A* Length = 606

 Score =  147 bits (372), Expect = 1e-37
 Identities = 63/393 (16%), Positives = 121/393 (30%), Gaps = 45/393 (11%)

Query: 64  SISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNN 123
            + E+ L  +     +          L    L +                         N
Sbjct: 205 KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEF------------------KDERN 246

Query: 124 LTNPIPPEIGYLSDLRVLLLY--NNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFK 181
           L    P  +  L D+ +        +       +   L N   + +    ++  + V   
Sbjct: 247 LEIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVKFHCLANVSAMSLAGVSIKYLEDVPK- 305

Query: 182 GMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTK 241
                  L +    L++FP+   +   L  L L+ N         +   L +L YL+L++
Sbjct: 306 -HFKWQSLSIIRCQLKQFPT--LDLPFLKSLTLTMNKGSI---SFKKVALPSLSYLDLSR 359

Query: 242 NSFE--GEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIP-S 298
           N+    G           LRHL L  N     +      L  L+ L+F  +    +   S
Sbjct: 360 NALSFSGCCSYSDLGTNSLRHLDLSFNGAI-IMSANFMGLEELQHLDFQHSTLKRVTEFS 418

Query: 299 SLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLS-LASLRQISEL 357
           +  +L +L  L++                 +L  L+++ N+   +   +  A+   ++ L
Sbjct: 419 AFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANTTNLTFL 478

Query: 358 GISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFD 417
            +S  QL +I                    L +L+ L +  N            L +L  
Sbjct: 479 DLSKCQLEQIS-------------WGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLST 525

Query: 418 LQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLT 450
           L  + N    S         SL   +L++N + 
Sbjct: 526 LDCSFNRIETSKGILQHFPKSLAFFNLTNNSVA 558

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  171 bits (436), Expect = 2e-46
 Identities = 106/514 (20%), Positives = 172/514 (33%), Gaps = 35/514 (6%)

Query: 87  FPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNN 146
             +   L+L+ N L         +  +L +LDLS   +          LS L  L+L  N
Sbjct: 27  PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86

Query: 147 SLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLE--KFPSFIA 204
            +        S L +   L      L   +      + +L +L + +NL++  K P + +
Sbjct: 87  PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFS 146

Query: 205 ECSKLMFLDLSDNLIMGHIPIEQLTHLENLEY----LNLTKNSFEGEIPREIKTFPKLRH 260
             + L  LDLS N I   I    L  L  +      L+L+ N     I        +L  
Sbjct: 147 NLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLHK 204

Query: 261 LKLGQNKLTGTIPDE-IGLLSNLEILE------FHENLFHGLIPSSLGNLRRLQRLNLKS 313
           L L  N  +  +    I  L+ LE+         +E        S+L  L  L     + 
Sbjct: 205 LTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264

Query: 314 AGLN---SSIPKELGFCANLTFLELSINNLTGSLPLS-LASLRQISELGISNNQLSEIIS 369
           A L+     I        N++   L    +      S     + +  +     Q   +  
Sbjct: 265 AYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKL 324

Query: 370 LQLQMNDLS----GKLPPEIGLLPKLEYLYLFDNK--FSGPIPQQIGNLTNLFDLQLANN 423
             L+    +    G    E+  LP LE+L L  N   F G   Q     T+L  L L+ N
Sbjct: 325 KSLKRLTFTSNKGGNAFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFN 383

Query: 424 FFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKL 483
               ++ S    L  L  L    + L       +         R L  +  S+ +     
Sbjct: 384 GVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL-----SLRNLIYLDISHTHTRV-A 436

Query: 484 PPGICRG-GNLIYLTANVNKLVGPIPESLW-NCTGLTRVRLEQNRLDGDITNALGIYPDL 541
             GI  G  +L  L    N         ++     LT + L Q +L+     A      L
Sbjct: 437 FNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSL 496

Query: 542 QYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRI 575
           Q +++  NQL  V    + + T+L    +  N  
Sbjct: 497 QVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPW 530

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  166 bits (422), Expect = 2e-44
 Identities = 95/535 (17%), Positives = 181/535 (33%), Gaps = 34/535 (6%)

Query: 118 DLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDP 177
                N    IP  +      + L L  N L     +   +     +L +    ++  + 
Sbjct: 13  QCMELNFYK-IPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIED 69

Query: 178 VKFKGMASLTDLWLDYNLLEKFPSFI-AECSKLMFLDLSDNLIMGHIPIEQLTHLENLEY 236
             ++ ++ L+ L L  N ++       +  S L  L   +  +   +    + HL+ L+ 
Sbjct: 70  GAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNL-ASLENFPIGHLKTLKE 128

Query: 237 LNLTKNSF-EGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFH-- 293
           LN+  N     ++P        L HL L  NK+      ++ +L  + +L    +L    
Sbjct: 129 LNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNP 188

Query: 294 -GLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLR 352
              I        RL +L L++   + ++ K       L  LE  ++ L      +  +L 
Sbjct: 189 MNFIQPGAFKEIRLHKLTLRNNFDSLNVMK--TCIQGLAGLE--VHRLVLGEFRNEGNLE 244

Query: 353 QISELGISNNQLSEIISLQLQMNDLSGKLPPEI-GLLPKLEYLYLFDNKFSGPIPQQIGN 411
           +  +  +       I   +L   D       ++   L  +    L               
Sbjct: 245 KFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFS--Y 302

Query: 412 LTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRN 471
                 L+L N  F    P+    L SL +L+ +SN+       E+           L  
Sbjct: 303 NFGWQHLELVNCKFG-QFPT--LKLKSLKRLTFTSNKGG-NAFSEVDLPS-------LEF 351

Query: 472 VSFSYNNFSGKLPPGICRGG--NLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDG 529
           +  S N  S K        G  +L YL  + N ++  +  +      L  +  + + L  
Sbjct: 352 LDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGLEQLEHLDFQHSNLKQ 410

Query: 530 -DITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAE-LGNLT 587
               +      +L Y+D+            +   ++L   +++GN  +     +    L 
Sbjct: 411 MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELR 470

Query: 588 YLQNLDIFDNQLTGKIPAQLFRS-SFLIRLNLRRNQLSDKIPAEIGKLSRLQYLD 641
            L  LD+   QL  ++    F S S L  LN+  NQL         +L+ LQ + 
Sbjct: 471 NLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIW 524

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  133 bits (337), Expect = 3e-33
 Identities = 88/421 (20%), Positives = 146/421 (34%), Gaps = 40/421 (9%)

Query: 64  SISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLIL----LDL 119
           ++ E+N+A++ +        FS   NL  L+L+ N +       +    ++ L    LDL
Sbjct: 125 TLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDL 184

Query: 120 SSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIP----HQLSNLQNAWLLR---IGANYL 172
           S N +   I P       L  L L NN  +  +       L+ L+   L+         L
Sbjct: 185 SLNPMNF-IQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243

Query: 173 EDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAE----CSKLMFLDLSDNLIMGHIPIEQL 228
           E  D    +G+ +LT        L+ +   I +     + +    L    I         
Sbjct: 244 EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYN 303

Query: 229 THLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFH 288
              ++LE +N     F             L+ L    NK       E+  L +LE L+  
Sbjct: 304 FGWQHLELVNCKFGQFPTLK------LKSLKRLTFTSNKGG-NAFSEVD-LPSLEFLDLS 355

Query: 289 ENLFH--GLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPL 346
            N     G    S      L+ L+L   G+  ++         L  L+   +NL      
Sbjct: 356 RNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEF 414

Query: 347 S-LASLRQISELGISNNQLSEIIS-----------LQLQMNDLSGKLPPEI-GLLPKLEY 393
           S   SLR +  L IS+       +           L++  N       P+I   L  L +
Sbjct: 415 SVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF 474

Query: 394 LYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTL 453
           L L   +     P    +L++L  L +A+N            L+SL K+ L +N    + 
Sbjct: 475 LDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 534

Query: 454 P 454
           P
Sbjct: 535 P 535

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score =  128 bits (323), Expect = 2e-31
 Identities = 92/437 (21%), Positives = 144/437 (32%), Gaps = 67/437 (15%)

Query: 64  SISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNL-VGSIPAGIGNATKLILLDLSSN 122
           S+ ++    + L  +L+ F       L  LN+  N +    +P    N T L  LDLSSN
Sbjct: 101 SLQKLVAVETNLA-SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSN 159

Query: 123 NLTNPIPPEIGYLSD---------------------------LRVLLLYNNSLTGQIP-- 153
            + +    ++  L                             L  L L NN  +  +   
Sbjct: 160 KIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKT 219

Query: 154 --HQLSNLQNAWLLR---IGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAE--- 205
               L+ L+   L+         LE  D    +G+ +LT        L+ +   I +   
Sbjct: 220 CIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFN 279

Query: 206 -CSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLG 264
             + +    L    I            ++LE +N     F             L+ L   
Sbjct: 280 CLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLK------LKSLKRLTFT 333

Query: 265 QNKLTGTIPDEIGLLSNLEILEFHENLFH--GLIPSSLGNLRRLQRLNLKSAGLNSSIPK 322
            NK       E+  L +LE L+   N     G    S      L+ L+L   G+  ++  
Sbjct: 334 SNKGG-NAFSEVD-LPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGV-ITMSS 390

Query: 323 ELGFCANLTFLELSINNLTGSLPLS-LASLRQISELGISNNQLSEIISLQLQMNDLSGKL 381
                  L  L+   +NL      S   SLR +  L IS+       +            
Sbjct: 391 NFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN-------- 442

Query: 382 PPEIGLLPKLEYLYLFDNKFSGPIPQQI-GNLTNLFDLQLANNFFNGSIPSTIGNLSSLV 440
                 L  LE L +  N F       I   L NL  L L+        P+   +LSSL 
Sbjct: 443 -----GLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQ 497

Query: 441 KLSLSSNQLTGTLPPEI 457
            L+++SNQL  ++P  I
Sbjct: 498 VLNMASNQLK-SVPDGI 513

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens} Length = 570

 Score = 95.9 bits (239), Expect = 6e-21
 Identities = 57/303 (18%), Positives = 91/303 (30%), Gaps = 31/303 (10%)

Query: 45  INSNSGPCNWNGIQCNEVGSISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSI 104
           +       +      N + ++S  +L +  ++   D      + +L  +N          
Sbjct: 264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQF---- 319

Query: 105 PAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWL 164
                    L  L  +SN   N    E+  L  L  L L  N L+ +             
Sbjct: 320 --PTLKLKSLKRLTFTSNKGGN-AFSEVD-LPSLEFLDLSRNGLSFK------------- 362

Query: 165 LRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIP 224
                            G  SL  L L +N +    S      +L  LD   + +     
Sbjct: 363 ---------GCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSE 413

Query: 225 IEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEI-GLLSNLE 283
                 L NL YL+++                 L  LK+  N        +I   L NL 
Sbjct: 414 FSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 473

Query: 284 ILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGS 343
            L+  +     L P++  +L  LQ LN+ S  L S          +L  + L  N    S
Sbjct: 474 FLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS 533

Query: 344 LPL 346
            P 
Sbjct: 534 CPR 536

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  164 bits (417), Expect = 2e-44
 Identities = 101/495 (20%), Positives = 176/495 (35%), Gaps = 47/495 (9%)

Query: 141 LLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFP 200
            +  +  +        + L       +G   + D        +  +T L  D   ++   
Sbjct: 7   TITQDTPINQIFT--DTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSID 62

Query: 201 SFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRH 260
             +   + L  ++ S+N +    P++ LT    L  + +  N      P  +     L  
Sbjct: 63  G-VEYLNNLTQINFSNNQLTDITPLKNLT---KLVDILMNNNQIADITP--LANLTNLTG 116

Query: 261 LKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSI 320
           L L  N++T   P  +  L+NL  LE   N    +  S+L  L  LQ+L+    G   + 
Sbjct: 117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSF---GNQVTD 169

Query: 321 PKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISL----QLQMND 376
            K L     L  L++S N ++      LA L  +  L  +NNQ+S+I  L     L    
Sbjct: 170 LKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIATNNQISDITPLGILTNLDELS 227

Query: 377 LSG---KLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTI 433
           L+G   K    +  L  L  L L +N+ S   P  +  LT L +L+L  N  +   P  +
Sbjct: 228 LNGNQLKDIGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--L 283

Query: 434 GNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNL 493
             L++L  L L+ NQL       I N K+      L  ++  +NN S      +     L
Sbjct: 284 AGLTALTNLELNENQLED--ISPISNLKN------LTYLTLYFNNISD--ISPVSSLTKL 333

Query: 494 IYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSG 553
             L    NK+      SL N T +  +    N++       L     +  + L D   + 
Sbjct: 334 QRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISD--LTPLANLTRITQLGLNDQAWTN 389

Query: 554 VLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFL 613
              +     +  +  +     +    PA + +       DI  N  +       +  S  
Sbjct: 390 APVNYKANVSIPNTVKNVTGALI--APATISDGGSYTEPDITWNLPS-YTNEVSYTFSQP 446

Query: 614 IRLNLRRNQLSDKIP 628
           + +       S  + 
Sbjct: 447 VTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  163 bits (416), Expect = 2e-44
 Identities = 101/473 (21%), Positives = 185/473 (39%), Gaps = 53/473 (11%)

Query: 84  FSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLL 143
            +    +T L  +   +      G+     L  ++ S+N LT+  P  +  L+ L  +L+
Sbjct: 42  QTDLDQVTTLQADRLGI--KSIDGVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILM 97

Query: 144 YNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFI 203
            NN +    P  L+NL N   L +  N + D DP   K + +L  L L  N +    + +
Sbjct: 98  NNNQIADITP--LANLTNLTGLTLFNNQITDIDP--LKNLTNLNRLELSSNTISDISA-L 152

Query: 204 AECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKL 263
           +  + L  L   + +      ++ L +L  LE L+++ N         +     L  L  
Sbjct: 153 SGLTSLQQLSFGNQVTD----LKPLANLTTLERLDISSNKVSD--ISVLAKLTNLESLIA 206

Query: 264 GQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKE 323
             N+++   P  +G+L+NL+ L  + N    +   +L +L  L  L+L +  +++  P  
Sbjct: 207 TNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP-- 260

Query: 324 LGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPP 383
           L     LT L+L  N ++   PL+   L  ++ L ++ NQL +I                
Sbjct: 261 LSGLTKLTELKLGANQISNISPLA--GLTALTNLELNENQLEDI---------------S 303

Query: 384 EIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLS 443
            I  L  L YL L+ N  S   P  + +LT L  L   NN  +    S++ NL+++  LS
Sbjct: 304 PISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSD--VSSLANLTNINWLS 359

Query: 444 LSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKL 503
              NQ++      + N         +  +  +   ++   P       ++     NV   
Sbjct: 360 AGHNQISD--LTPLANLTR------ITQLGLNDQAWTN-APVNYKANVSIPNTVKNVTGA 410

Query: 504 VGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLT 556
           +   P ++ +    T   +  N            +     I  G    SG +T
Sbjct: 411 LIA-PATISDGGSYTEPDITWNLPS-YTNEVSYTFSQPVTIGKGTTTFSGTVT 461

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  157 bits (400), Expect = 4e-42
 Identities = 95/422 (22%), Positives = 162/422 (38%), Gaps = 40/422 (9%)

Query: 225 IEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEI 284
           I   T L       L K +    +        ++  L+  +  +     D +  L+NL  
Sbjct: 17  IFTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIK--SIDGVEYLNNLTQ 72

Query: 285 LEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSL 344
           + F  N    + P  L NL +L  + + +  +    P  L    NLT L L  N +T   
Sbjct: 73  INFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTLFNNQITDID 128

Query: 345 PLSLASLRQISELGISNNQLSEIISL----QLQMNDLSGKL--PPEIGLLPKLEYLYLFD 398
           PL   +L  ++ L +S+N +S+I +L     LQ      ++     +  L  LE L +  
Sbjct: 129 PLK--NLTNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISS 186

Query: 399 NKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIG 458
           NK S      +  LTNL  L   NN  +   P  +G L++L +LSL+ NQL       + 
Sbjct: 187 NKVSDISV--LAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD--IGTLA 240

Query: 459 NSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLT 518
           +  +      L ++  + N  S      +     L  L    N++    P  L   T LT
Sbjct: 241 SLTN------LTDLDLANNQISN--LAPLSGLTKLTELKLGANQISNISP--LAGLTALT 290

Query: 519 RVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGG 578
            + L +N+L+    + +    +L Y+ L  N +S +  S     T L       N++   
Sbjct: 291 NLELNENQLED--ISPISNLKNLTYLTLYFNNISDI--SPVSSLTKLQRLFFYNNKVSD- 345

Query: 579 IPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIPAEIGKLSRLQ 638
             + L NLT +  L    NQ++   P        + +L L     ++        +S   
Sbjct: 346 -VSSLANLTNINWLSAGHNQISDLTPLANLTR--ITQLGLNDQAWTNAPVNYKANVSIPN 402

Query: 639 YL 640
            +
Sbjct: 403 TV 404

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A Length = 466

 Score =  120 bits (303), Expect = 3e-29
 Identities = 79/334 (23%), Positives = 130/334 (38%), Gaps = 29/334 (8%)

Query: 84  FSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLL 143
            S   +L  L+   N +    P  + N T L  LD+SSN +++     +  L++L  L+ 
Sbjct: 152 LSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNKVSDI--SVLAKLTNLESLIA 206

Query: 144 YNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFI 203
            NN ++   P  L  L N   L +  N L+D        + +LTDL L  N +      +
Sbjct: 207 TNNQISDITP--LGILTNLDELSLNGNQLKDIGT--LASLTNLTDLDLANNQISNLAP-L 261

Query: 204 AECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKL 263
           +  +KL  L L  N I     I  L  L  L  L L +N  E   P  I     L +L L
Sbjct: 262 SGLTKLTELKLGANQISN---ISPLAGLTALTNLELNENQLEDISP--ISNLKNLTYLTL 316

Query: 264 GQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKE 323
             N ++   P  +  L+ L+ L F+ N    +  SSL NL  +  L+     ++   P  
Sbjct: 317 YFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP-- 370

Query: 324 LGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISL----QLQMNDLSG 379
           L     +T L L+    T +     A++   + +      L    ++         D++ 
Sbjct: 371 LANLTRITQLGLNDQAWTNAPVNYKANVSIPNTVKNVTGALIAPATISDGGSYTEPDITW 430

Query: 380 KLPPEIGLLP----KLEYLYLFDNKFSGPIPQQI 409
            LP     +     +   +      FSG + Q +
Sbjct: 431 NLPSYTNEVSYTFSQPVTIGKGTTTFSGTVTQPL 464

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  159 bits (405), Expect = 6e-44
 Identities = 78/362 (21%), Positives = 137/362 (37%), Gaps = 38/362 (10%)

Query: 90  LTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLT 149
              L      +    P    +  + I   L   ++T+ +      L  +  L++    + 
Sbjct: 2   AATLATLPAPINQIFP--DADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57

Query: 150 GQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKL 209
                 +  L N   L +  N + D  P     +  LT+L++  N +    +     + L
Sbjct: 58  SIQG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDISAL-QNLTNL 112

Query: 210 MFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLT 269
             L L+++ I     I  L +L  +  LNL  N    ++   +     L +L + ++K+ 
Sbjct: 113 RELYLNEDNISD---ISPLANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVK 168

Query: 270 GTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCAN 329
              P  I  L++L  L  + N    + P  L +L  L         +    P  +     
Sbjct: 169 DVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTR 222

Query: 330 LTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLP 389
           L  L++  N +T   PL+  +L Q++ L I  NQ+S+I                 +  L 
Sbjct: 223 LNSLKIGNNKITDLSPLA--NLSQLTWLEIGTNQISDI---------------NAVKDLT 265

Query: 390 KLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQL 449
           KL+ L +  N+ S      + NL+ L  L L NN         IG L++L  L LS N +
Sbjct: 266 KLKMLNVGSNQISDISV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNHI 323

Query: 450 TG 451
           T 
Sbjct: 324 TD 325

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  145 bits (369), Expect = 6e-39
 Identities = 80/413 (19%), Positives = 144/413 (34%), Gaps = 71/413 (17%)

Query: 212 LDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGT 271
           L      I     I     L       L K S    +    +    +  L +   K+   
Sbjct: 5   LATLPAPINQ---IFPDADLAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVAS- 58

Query: 272 IPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLT 331
               I  L+NLE L  + N    + P  L NL +L  L + +  +  +    L    NL 
Sbjct: 59  -IQGIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKI--TDISALQNLTNLR 113

Query: 332 FLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKL 391
            L L+ +N++   PL+  +L ++  L +  N     +S               +  +  L
Sbjct: 114 ELYLNEDNISDISPLA--NLTKMYSLNLGANHNLSDLS--------------PLSNMTGL 157

Query: 392 EYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTG 451
            YL + ++K     P  I NLT+L+ L L  N      P  + +L+SL   +   NQ+T 
Sbjct: 158 NYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITD 213

Query: 452 TLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESL 511
                + N         L ++    N  +                              L
Sbjct: 214 --ITPVANMTR------LNSLKIGNNKITD--------------------------LSPL 239

Query: 512 WNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRIS 571
            N + LT + +  N++     NA+     L+ +++G NQ+S +  S     + L++  ++
Sbjct: 240 ANLSQLTWLEIGTNQISD--INAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLN 295

Query: 572 GNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLS 624
            N++       +G LT L  L +  N +T   P        +   +     + 
Sbjct: 296 NNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRPLASLSK--MDSADFANQVIK 346

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  144 bits (367), Expect = 1e-38
 Identities = 84/384 (21%), Positives = 159/384 (41%), Gaps = 46/384 (11%)

Query: 258 LRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLN 317
              L      +    PD    L+        +     ++      L  + +L +    + 
Sbjct: 2   AATLATLPAPINQIFPDAD--LAEGIRAVLQKASVTDVVT--QEELESITKLVVAGEKVA 57

Query: 318 SSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDL 377
           S   + + +  NL +L L+ N +T   PLS  +L +++ L I  N++++I          
Sbjct: 58  S--IQGIEYLTNLEYLNLNGNQITDISPLS--NLVKLTNLYIGTNKITDI---------- 103

Query: 378 SGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLS 437
                  +  L  L  LYL ++  S   P  + NLT ++ L L  N  N S  S + N++
Sbjct: 104 -----SALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNLGANH-NLSDLSPLSNMT 155

Query: 438 SLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLT 497
            L  L+++ +++       I N         L ++S +YN         +    +L Y T
Sbjct: 156 GLNYLTVTESKVKD--VTPIANLTD------LYSLSLNYNQIED--ISPLASLTSLHYFT 205

Query: 498 ANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTS 557
           A VN++    P  + N T L  +++  N++     + L     L ++++G NQ+S +  +
Sbjct: 206 AYVNQITDITP--VANMTRLNSLKIGNNKITD--LSPLANLSQLTWLEIGTNQISDI--N 259

Query: 558 NWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLN 617
                T L    +  N+I     + L NL+ L +L + +NQL  +    +   + L  L 
Sbjct: 260 AVKDLTKLKMLNVGSNQISD--ISVLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLF 317

Query: 618 LRRNQLSDKIPAEIGKLSRLQYLD 641
           L +N ++D  P  +  LS++   D
Sbjct: 318 LSQNHITDIRP--LASLSKMDSAD 339

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B} Length = 347

 Score =  130 bits (330), Expect = 1e-33
 Identities = 68/283 (24%), Positives = 121/283 (42%), Gaps = 19/283 (6%)

Query: 84  FSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLL 143
            S    LT L +  N +  +  + + N T L  L L+ +N+++  P  +  L+ +  L L
Sbjct: 84  LSNLVKLTNLYIGTNKI--TDISALQNLTNLRELYLNEDNISDISP--LANLTKMYSLNL 139

Query: 144 YNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFI 203
             N     +   LSN+     L +  + ++D  P     +  L  L L+YN +E      
Sbjct: 140 GANHNLSDLSP-LSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISPL- 195

Query: 204 AECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKL 263
           A  + L +     N I    P+  +T    L  L +  N      P  +    +L  L++
Sbjct: 196 ASLTSLHYFTAYVNQITDITPVANMT---RLNSLKIGNNKITDLSP--LANLSQLTWLEI 250

Query: 264 GQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKE 323
           G N+++    + +  L+ L++L    N    +  S L NL +L  L L +  L +   + 
Sbjct: 251 GTNQISD--INAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEV 306

Query: 324 LGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSE 366
           +G   NLT L LS N++T   PL+  SL ++     +N  + +
Sbjct: 307 IGGLTNLTTLFLSQNHITDIRPLA--SLSKMDSADFANQVIKK 347

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  161 bits (409), Expect = 7e-43
 Identities = 91/532 (17%), Positives = 172/532 (32%), Gaps = 45/532 (8%)

Query: 117 LDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPD 176
            D  S + T+ IP  +   + ++ L L  N +T      L    N  +L + ++ +   +
Sbjct: 10  CDGRSRSFTS-IPSGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIE 66

Query: 177 PVKFKGMASLTDLWLDYNLLEKFPS-FIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLE 235
              F  + SL  L L  N L    S +    S L +L+L  N            +L NL+
Sbjct: 67  GDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQ 126

Query: 236 YLNLTKNSFEGEIPRE-IKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHG 294
            L +       EI R        L  L++    L       +  + ++  L  H +    
Sbjct: 127 TLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESAF 186

Query: 295 LIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQI 354
           L+      L  ++ L L+   L       L      + ++      +     S   L ++
Sbjct: 187 LLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKL 246

Query: 355 SELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLE-----YLYLFDNKFSGPIPQQI 409
               +  +++         + D +      +  L K+E      L++        +    
Sbjct: 247 LRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVY 306

Query: 410 GNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFL 469
             L  +  + + N+       S   +L SL  L LS N +       + NS        L
Sbjct: 307 SLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEY---LKNSACKGAWPSL 363

Query: 470 RNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDG 529
           + +  S N+                         +    E L     LT + + +N    
Sbjct: 364 QTLVLSQNHLRS----------------------MQKTGEILLTLKNLTSLDISRNTF-H 400

Query: 530 DITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYL 589
            + ++      +++++L    +  V          L    +S N +          L  L
Sbjct: 401 PMPDSCQWPEKMRFLNLSSTGIRVV---KTCIPQTLEVLDVSNNNLDS-FSL---FLPRL 453

Query: 590 QNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIPAEIGKLSRLQYLD 641
           Q L I  N+L   +P        L+ + + RNQL         +L+ LQ + 
Sbjct: 454 QELYISRNKLK-TLPDASLFPV-LLVMKISRNQLKSVPDGIFDRLTSLQKIW 503

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  156 bits (395), Expect = 7e-41
 Identities = 101/543 (18%), Positives = 181/543 (33%), Gaps = 60/543 (11%)

Query: 87  FPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEI-GYLSDLRVLLLYN 145
              + +L+L+ N +       +     L +L L S+ +   I  +    L  L  L L +
Sbjct: 25  TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINT-IEGDAFYSLGSLEHLDLSD 83

Query: 146 NSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFP--SFI 203
           N         LS+L ++W                F  ++SL  L L  N  +     S  
Sbjct: 84  N--------HLSSLSSSW----------------FGPLSSLKYLNLMGNPYQTLGVTSLF 119

Query: 204 AECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKL 263
              + L  L + +      I       L +L  L +   S      + +K+   + HL L
Sbjct: 120 PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTL 179

Query: 264 GQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNS----- 318
             ++    +     +LS++  LE  +        S L        +   +   +      
Sbjct: 180 HLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDES 239

Query: 319 --SIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMND 376
              + K L +   L+ +E     L G    + +    +SEL     +   I  L +    
Sbjct: 240 FNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSEL--GKVETVTIRRLHIPQFY 297

Query: 377 LSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPST---I 433
           L   L     LL K++ + + ++K          +L +L  L L+ N             
Sbjct: 298 LFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACK 357

Query: 434 GNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGP-RFLRNVSFSYNNFSGKLPPGICRGGN 492
           G   SL  L LS N L       +  +       + L ++  S N F   +P        
Sbjct: 358 GAWPSLQTLVLSQNHLR-----SMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEK 411

Query: 493 LIYLTANVNKLVGPIPESLWNC--TGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQ 550
           + +L  +   +       +  C    L  + +  N LD   +  L   P LQ + +  N+
Sbjct: 412 MRFLNLSSTGI-----RVVKTCIPQTLEVLDVSNNNLD-SFSLFL---PRLQELYISRNK 462

Query: 551 LSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRS 610
           L  +   +      L   +IS N++K         LT LQ + +  N      P   + S
Sbjct: 463 LKTL--PDASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDYLS 520

Query: 611 SFL 613
            +L
Sbjct: 521 RWL 523

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  134 bits (339), Expect = 1e-33
 Identities = 82/503 (16%), Positives = 160/503 (31%), Gaps = 62/503 (12%)

Query: 78  TLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTN-PIPPEIGYLS 136
           T++G  F +  +L  L+L+ N+L     +  G  + L  L+L  N      +      L+
Sbjct: 64  TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLT 123

Query: 137 DLRVLLLYNNSLTGQIPHQ-LSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNL 195
           +L+ L + N     +I     + L +   L I A  L +      K +  +  L L  + 
Sbjct: 124 NLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSE 183

Query: 196 LEKFPSFIAEC-SKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKT 254
                   A+  S + +L+L D  +        L   E    +                 
Sbjct: 184 SAFLLEIFADILSSVRYLELRDTNLA-RFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNE 242

Query: 255 FPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSA 314
             KL    L  +++      E    +   + +F+ +    +          ++RL++   
Sbjct: 243 LLKLLRYILELSEV------EFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQF 296

Query: 315 GLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQM 374
            L   +         +  + +  + +          L+ +  L +S N +          
Sbjct: 297 YLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSENLMV--------- 347

Query: 375 NDLSGKLPPEIGLLPKLEYLYLFDNKFS--GPIPQQIGNLTNLFDLQLANNFFNGSIPST 432
            +   K     G  P L+ L L  N         + +  L NL  L ++ N F+  +P +
Sbjct: 348 -EEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDS 405

Query: 433 IGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGN 492
                 +  L+LSS  +   +   I        P+ L  +  S NN              
Sbjct: 406 CQWPEKMRFLNLSSTGIR-VVKTCI--------PQTLEVLDVSNNNLDS----------- 445

Query: 493 LIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLS 552
                             L     L  + + +N+L         ++P L  + +  NQL 
Sbjct: 446 --------------FSLFL---PRLQELYISRNKL--KTLPDASLFPVLLVMKISRNQLK 486

Query: 553 GVLTSNWGKCTNLSNFRISGNRI 575
            V    + + T+L    +  N  
Sbjct: 487 SVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score =  126 bits (319), Expect = 6e-31
 Identities = 80/415 (19%), Positives = 146/415 (35%), Gaps = 33/415 (7%)

Query: 64  SISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAG-IGNATKLILLDLSSN 122
           S+  +NL  +          F    NL  L +        I        T L  L++ + 
Sbjct: 99  SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKAL 158

Query: 123 NLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKG 182
           +L N     +  + D+  L L+ +     +      L +   L +    L          
Sbjct: 159 SLRNYQSQSLKSIRDIHHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPV 218

Query: 183 MASLTDL-----------WLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIP-----IE 226
               + +              +N L K   +I E S++ F D + N +    P     + 
Sbjct: 219 DEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVS 278

Query: 227 QLTHLE--NLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEI 284
           +L  +E   +  L++ +     ++        K++ + +  +K+          L +LE 
Sbjct: 279 ELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEF 338

Query: 285 LEFHENLFHGLI---PSSLGNLRRLQRLNLKSAGLNSSIPKELGFCA---NLTFLELSIN 338
           L+  ENL         +  G    LQ L L    L  S+ K         NLT L++S N
Sbjct: 339 LDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHL-RSMQKTGEILLTLKNLTSLDISRN 397

Query: 339 NLTGSLPLSLASLRQISELGISNNQLSEI---ISLQLQMNDLSGKLPPEIGL-LPKLEYL 394
                +P S     ++  L +S+  +  +   I   L++ D+S        L LP+L+ L
Sbjct: 398 TFH-PMPDSCQWPEKMRFLNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSFSLFLPRLQEL 456

Query: 395 YLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQL 449
           Y+  NK    +P        L  ++++ N            L+SL K+ L +N  
Sbjct: 457 YISRNKLKT-LP-DASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPW 509

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 91.3 bits (227), Expect = 2e-19
 Identities = 57/387 (14%), Positives = 121/387 (31%), Gaps = 52/387 (13%)

Query: 256 PKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAG 315
                        T +IP   GL + ++ L+   N    +    L     LQ L LKS+ 
Sbjct: 5   DASGVCDGRSRSFT-SIPS--GLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSR 61

Query: 316 LNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMN 375
           +N+          +L  L+LS N+L+         L  +  L +  N    +        
Sbjct: 62  INTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTL-------- 113

Query: 376 DLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQ-IGNLTNLFDLQLANNFFNGSIPSTIG 434
                +      L  L+ L + + +    I +     LT+L +L++           ++ 
Sbjct: 114 ----GVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLK 169

Query: 435 NLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLI 494
           ++  +  L+L  ++    L     +  S      LR+ + +   FS      +      +
Sbjct: 170 SIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKL 228

Query: 495 YLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGV 554
               +V      + +  +N                 +   L    +L  ++  D  L+G+
Sbjct: 229 AFRGSV------LTDESFNE----------------LLKLLRYILELSEVEFDDCTLNGL 266

Query: 555 LTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLI 614
              N  +   +S                      ++ L I    L   +         + 
Sbjct: 267 GDFNPSESDVVSELG-------------KVETVTIRRLHIPQFYLFYDLSTVYSLLEKVK 313

Query: 615 RLNLRRNQLSDKIPAEIGKLSRLQYLD 641
           R+ +  +++     +    L  L++LD
Sbjct: 314 RITVENSKVFLVPCSFSQHLKSLEFLD 340

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 90.6 bits (225), Expect = 3e-19
 Identities = 48/290 (16%), Positives = 94/290 (32%), Gaps = 18/290 (6%)

Query: 27  LLNWKSSLVSSSLPSWTAINSNSGPCNWNGIQCNEVGSISEINLANSGLDGTLDGFDFSA 86
           L    S L   S      +       +        +  + + N + S     +       
Sbjct: 228 LAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESD---VVSELGKVE 284

Query: 87  FPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNN 146
              +  L++    L   +        K+  + + ++ +         +L  L  L L  N
Sbjct: 285 TVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEFLDLSEN 344

Query: 147 SLTGQIPHQ---LSNLQNAWLLRIGANYLED--PDPVKFKGMASLTDLWLDYNLLEKFPS 201
            +  +            +   L +  N+L            + +LT L +  N     P 
Sbjct: 345 LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFHPMPD 404

Query: 202 FIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHL 261
                 K+ FL+LS   I   +          LE L+++ N+ +      +   P+L+ L
Sbjct: 405 SCQWPEKMRFLNLSSTGI-RVVKTCIPQ---TLEVLDVSNNNLD-SFSLFL---PRLQEL 456

Query: 262 KLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNL 311
            + +NKL  T+PD   L   L +++   N    +       L  LQ++ L
Sbjct: 457 YISRNKLK-TLPDA-SLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWL 504

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A* Length = 549

 Score = 63.2 bits (154), Expect = 1e-10
 Identities = 43/315 (13%), Positives = 88/315 (27%), Gaps = 70/315 (22%)

Query: 327 CANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIG 386
           C      +    + T S+P  L     +  L +S N+++ I        DL         
Sbjct: 4   CDASGVCDGRSRSFT-SIPSGL--TAAMKSLDLSFNKITYI-----GHGDLRA------- 48

Query: 387 LLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSS 446
               L+ L L  ++ +        +L +L  L L++N  +    S  G LSSL  L+L  
Sbjct: 49  -CANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMG 107

Query: 447 NQLTG-TLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVG 505
           N      +     N  +      L+ +         ++      G               
Sbjct: 108 NPYQTLGVTSLFPNLTN------LQTLRIGNVETFSEIRRIDFAG--------------- 146

Query: 506 PIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNL 565
                      LT                      L  +++    L    + +     ++
Sbjct: 147 -----------LTS---------------------LNELEIKALSLRNYQSQSLKSIRDI 174

Query: 566 SNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSD 625
            +  +  +     +      L+ ++ L++ D  L     + L        +     + S 
Sbjct: 175 HHLTLHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSV 234

Query: 626 KIPAEIGKLSRLQYL 640
                  +L +L   
Sbjct: 235 LTDESFNELLKLLRY 249

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  163 bits (415), Expect = 1e-42
 Identities = 113/579 (19%), Positives = 190/579 (32%), Gaps = 63/579 (10%)

Query: 84  FSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEI-GYLSDLRVLL 142
                    L L+ N +     +      +L LL+L S      I  E    L +LR+L 
Sbjct: 20  PQVLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILD 79

Query: 143 LYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDP--DPVKFKGMASLTDLWLDYNLLE--K 198
           L ++ +    P     L + + LR+    L D       F+ + +LT L L  N +    
Sbjct: 80  LGSSKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLY 139

Query: 199 FPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLE--NLEYLNLTKNSFEGEIPREIKTFP 256
                 + + L  +D S N I   +   +L  L+   L + +L  NS    +  +     
Sbjct: 140 LHPSFGKLNSLKSIDFSSNQIF-LVCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCM 198

Query: 257 K------LRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLN 310
                  L  L +  N  T            ++I     N        SL     +    
Sbjct: 199 NPFRNMVLEILDVSGNGWT------------VDITGNFSNAISKSQAFSLILAHHIMGAG 246

Query: 311 LKSAGLNSSIPKELG--FCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEII 368
                +             +++  L+LS   +         +L+ +  L ++ N++++I 
Sbjct: 247 FGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIA 306

Query: 369 SLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGS 428
                              L  L+ L L  N            L  +  + L  N     
Sbjct: 307 DEAFY-------------GLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAII 353

Query: 429 IPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGIC 488
              T   L  L  L L  N LT           +      + ++  S N     LP    
Sbjct: 354 QDQTFKFLEKLQTLDLRDNALT-----------TIHFIPSIPDIFLSGNKLV-TLPKINL 401

Query: 489 RGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNAL-GIYPDLQYIDLG 547
              NLI+L+ N  + +  I   L     L  + L QNR      +      P L+ + LG
Sbjct: 402 T-ANLIHLSENRLENL-DILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLG 459

Query: 548 DNQLSGVLTS--NWGKCTNLSNFR---ISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGK 602
           +N L     +   W     LS+ +   ++ N +    P    +LT L+ L +  N+LT  
Sbjct: 460 ENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLT-V 518

Query: 603 IPAQLFRSSFLIRLNLRRNQLSDKIPAEIGKLSRLQYLD 641
           +      ++ L  L++ RNQL    P     LS L    
Sbjct: 519 LSHNDLPAN-LEILDISRNQLLAPNPDVFVSLSVLDITH 556

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens} Length = 844

 Score =  142 bits (360), Expect = 1e-35
 Identities = 105/511 (20%), Positives = 184/511 (36%), Gaps = 58/511 (11%)

Query: 64  SISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSI--PAGIGNATKLILLDLSS 121
           ++  ++L +S +   L    F    +L  L L    L  ++       N   L  LDLS 
Sbjct: 74  NLRILDLGSSKIY-FLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSK 132

Query: 122 NNLTN-PIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWL--LRIGANYLEDPDPV 178
           N + +  + P  G L+ L+ +   +N +     H+L  LQ   L    + AN L     V
Sbjct: 133 NQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLSFFSLAANSLYSRVSV 192

Query: 179 KFKGMA------SLTDLWLDYNLLEKFPSFI-------------AECSKLMFLDLSDNLI 219
            +           L  L +  N      +                    +M      + I
Sbjct: 193 DWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNI 252

Query: 220 MGHIPIEQLTHLE--NLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIG 277
                      L   ++ +L+L+         R  +T   L+ L L  NK+     +   
Sbjct: 253 -KDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFY 311

Query: 278 LLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSI 337
            L NL++L    NL   L  S+   L ++  ++L+   +     +   F   L  L+L  
Sbjct: 312 GLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRD 371

Query: 338 NNLTGSLPLSLASLRQISELGISNNQLSEIIS-------LQLQMNDLSGKLPPEIGL-LP 389
           N LT     ++  +  I ++ +S N+L  +         + L  N L         L +P
Sbjct: 372 NALT-----TIHFIPSIPDIFLSGNKLVTLPKINLTANLIHLSENRLENLDILYFLLRVP 426

Query: 390 KLEYLYLFDNKFSG-PIPQQIGNLTNLFDLQLANNFFNGSIPSTI-----GNLSSLVKLS 443
            L+ L L  N+FS     Q      +L  L L  N    +  + +       LS L  L 
Sbjct: 427 HLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVFEGLSHLQVLY 486

Query: 444 LSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKL 503
           L+ N L  +LPP + +  +      LR +S + N  +  L        NL  L  + N+L
Sbjct: 487 LNHNYLN-SLPPGVFSHLTA-----LRGLSLNSNRLT-VLSHNDLP-ANLEILDISRNQL 538

Query: 504 VGPIPESLWNCTGLTRVRLEQNRLDGDITNA 534
           + P P+   +   L+ + +  N+   +   +
Sbjct: 539 LAPNPDVFVS---LSVLDITHNKFICECELS 566

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  153 bits (389), Expect = 7e-42
 Identities = 68/333 (20%), Positives = 106/333 (31%), Gaps = 40/333 (12%)

Query: 129 PPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTD 188
                + S    L    ++        LS  Q  +       +       +     +   
Sbjct: 5   HHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNNPQI 60

Query: 189 LWLDYNLLEKFPSFIAECS--KLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEG 246
                  L+     + + +    + L+L    +    P +Q   L +L+++ +       
Sbjct: 61  ETRTGRALKATADLLEDATQPGRVALELRSVPL-PQFP-DQAFRLSHLQHMTIDAAGLM- 117

Query: 247 EIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRL 306
           E+P  ++ F  L  L L +N L   +P  I  L+ L  L          +P  L +    
Sbjct: 118 ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAST--- 173

Query: 307 QRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSE 366
                           E     NL  L L    +  SLP S+A+L+ +  L I N+ LS 
Sbjct: 174 ------------DASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA 220

Query: 367 IISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFN 426
                         L P I  LPKLE L L         P   G    L  L L +    
Sbjct: 221 --------------LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNL 266

Query: 427 GSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGN 459
            ++P  I  L+ L KL L        LP  I  
Sbjct: 267 LTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQ 299

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  147 bits (372), Expect = 2e-39
 Identities = 59/363 (16%), Positives = 108/363 (29%), Gaps = 62/363 (17%)

Query: 89  NLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSL 148
               L    +  +      +    +    D +  +            ++ ++      +L
Sbjct: 13  GRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNNPQIETRTGRAL 68

Query: 149 TGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSK 208
                                      D ++         L L    L +FP      S 
Sbjct: 69  K-----------------------ATADLLEDATQPGRVALELRSVPLPQFPDQAFRLSH 105

Query: 209 LMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKL 268
           L  + +    +M  +P + +     LE L L +N     +P  I +  +LR L +     
Sbjct: 106 LQHMTIDAAGLM-ELP-DTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPE 162

Query: 269 TGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCA 328
              +P+ +                          L  LQ L L+  G+  S+P  +    
Sbjct: 163 LTELPEPLASTD---------------ASGEHQGLVNLQSLRLEWTGI-RSLPASIANLQ 206

Query: 329 NLTFLELSINNLTGSLPLSLASLRQISELGIS-NNQLSEIISLQLQMNDLSGKLPPEIGL 387
           NL  L++  + L+ +L  ++  L ++ EL +     L                 PP  G 
Sbjct: 207 NLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRN--------------YPPIFGG 251

Query: 388 LPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSN 447
              L+ L L D      +P  I  LT L  L L        +PS I  L +   + +  +
Sbjct: 252 RAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH 311

Query: 448 QLT 450
              
Sbjct: 312 LQA 314

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  137 bits (348), Expect = 3e-36
 Identities = 59/334 (17%), Positives = 108/334 (32%), Gaps = 61/334 (18%)

Query: 84  FSAFPNLTALNLNMNNLVG--SIPAGIGNAT--KLILLDLSSNNLTNPIPPEIGYLSDLR 139
                N     +         +    + +AT    + L+L S  L    P +   LS L+
Sbjct: 49  AWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLPQ-FPDQAFRLSHLQ 107

Query: 140 VLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKF 199
            + +    L  ++P  +                             L  L L  N L   
Sbjct: 108 HMTIDAAGLM-ELPDTMQQFAG------------------------LETLTLARNPLRAL 142

Query: 200 PSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLR 259
           P+ IA  ++L  L +     +  +P       E L   +            E +    L+
Sbjct: 143 PASIASLNRLRELSIRACPELTELP-------EPLASTDA---------SGEHQGLVNLQ 186

Query: 260 HLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSS 319
            L+L    +  ++P  I  L NL+ L+   +    L   ++ +L +L+ L+L+      +
Sbjct: 187 SLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSAL-GPAIHHLPKLEELDLRGCTALRN 244

Query: 320 IPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSG 379
            P   G  A L  L L   +   +LPL +  L Q+ +L +            L       
Sbjct: 245 YPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCV-------NLS------ 291

Query: 380 KLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLT 413
           +LP  I  LP    + +  +  +     +     
Sbjct: 292 RLPSLIAQLPANCIILVPPHLQAQLDQHRPVARP 325

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  133 bits (338), Expect = 6e-35
 Identities = 55/308 (17%), Positives = 95/308 (30%), Gaps = 46/308 (14%)

Query: 66  SEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLT 125
                    L  T D  + +  P   AL L    L    P      + L  + + +  L 
Sbjct: 59  QIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQAFRLSHLQHMTIDAAGLM 117

Query: 126 NPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMAS 185
             +P  +   + L  L L  N L   +P  +++L                          
Sbjct: 118 E-LPDTMQQFAGLETLTLARNPLR-ALPASIASLNR------------------------ 151

Query: 186 LTDLWLDY-NLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSF 244
           L +L +     L + P  +A                      +   L NL+ L L     
Sbjct: 152 LRELSIRACPELTELPEPLASTDAS----------------GEHQGLVNLQSLRLEWTGI 195

Query: 245 EGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLR 304
              +P  I     L+ LK+  + L+  +   I  L  LE L+          P   G   
Sbjct: 196 R-SLPASIANLQNLKSLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNYPPIFGGRA 253

Query: 305 RLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQL 364
            L+RL LK      ++P ++     L  L+L        LP  +A L     + +  +  
Sbjct: 254 PLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ 313

Query: 365 SEIISLQL 372
           +++   + 
Sbjct: 314 AQLDQHRP 321

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  130 bits (330), Expect = 7e-34
 Identities = 58/375 (15%), Positives = 110/375 (29%), Gaps = 72/375 (19%)

Query: 270 GTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCAN 329
           G+        S  E L F  +         L   +R    +                  N
Sbjct: 2   GSSHHHHHHSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHSAWRQANS----NN 57

Query: 330 LTFLELSINNLTGSLPLSLASLRQIS--ELGISNNQLSEIISLQLQMNDLSGKLPPEIGL 387
                 +   L  +    L    Q     L + +  L +               P +   
Sbjct: 58  PQIETRTGRALK-ATADLLEDATQPGRVALELRSVPLPQ--------------FPDQAFR 102

Query: 388 LPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSN 447
           L  L+++ +        +P  +     L  L LA N    ++P++I +L+ L +LS+ + 
Sbjct: 103 LSHLQHMTIDAAGLME-LPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRAC 160

Query: 448 QLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPI 507
                LP  + ++ +    + L N                     L  L      +   +
Sbjct: 161 PELTELPEPLASTDASGEHQGLVN---------------------LQSLRLEWTGIRS-L 198

Query: 508 PESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSN 567
           P S+ N   L                        + + + ++ LS  L         L  
Sbjct: 199 PASIANLQNL------------------------KSLKIRNSPLSA-LGPAIHHLPKLEE 233

Query: 568 FRISGNRIKGGIPAELGNLTYLQNLDIFD-NQLTGKIPAQLFRSSFLIRLNLRRNQLSDK 626
             + G       P   G    L+ L + D + L   +P  + R + L +L+LR      +
Sbjct: 234 LDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLL-TLPLDIHRLTQLEKLDLRGCVNLSR 292

Query: 627 IPAEIGKLSRLQYLD 641
           +P+ I +L     + 
Sbjct: 293 LPSLIAQLPANCIIL 307

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score =  121 bits (305), Expect = 2e-30
 Identities = 55/391 (14%), Positives = 109/391 (27%), Gaps = 90/391 (23%)

Query: 230 HLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHE 289
           H    E L    ++        +  + +  +    +              +N +I     
Sbjct: 10  HSSGRENLYFQGSTALRPYHDVLSQWQRHYNADRNRWHS----AWRQANSNNPQIETRTG 65

Query: 290 NLFHGLIPSSLGNLRR--LQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLS 347
                     L +  +     L L+S  L    P +    ++L  + +    L   LP +
Sbjct: 66  RALKAT-ADLLEDATQPGRVALELRSVPL-PQFPDQAFRLSHLQHMTIDAAGLM-ELPDT 122

Query: 348 LASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQ 407
           +     +  L ++ N L                LP  I  L +L  L +        +P+
Sbjct: 123 MQQFAGLETLTLARNPLRA--------------LPASIASLNRLRELSIRACPELTELPE 168

Query: 408 QIGN---------LTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIG 458
            + +         L NL  L+L       S+P++I NL +L  L + ++ L+  L P I 
Sbjct: 169 PLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLS-ALGPAIH 226

Query: 459 NSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLT-ANVNKLVGPIPESLWNCTGL 517
           +         L  +           PP       L  L   + + L+  +P  +   T L
Sbjct: 227 HLPK------LEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLT-LPLDIHRLTQL 279

Query: 518 TRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKG 577
                                   + +DL        L+                     
Sbjct: 280 ------------------------EKLDLRGCVN---LSR-------------------- 292

Query: 578 GIPAELGNLTYLQNLDIFDNQLTGKIPAQLF 608
            +P+ +  L     + +  +        +  
Sbjct: 293 -LPSLIAQLPANCIILVPPHLQAQLDQHRPV 322

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV} Length = 328

 Score = 79.6 bits (197), Expect = 2e-16
 Identities = 35/181 (19%), Positives = 64/181 (35%), Gaps = 15/181 (8%)

Query: 89  NLTALNLNMNNLVGSIPAGIGNA---------TKLILLDLSSNNLTNPIPPEIGYLSDLR 139
            L  L++     +  +P  + +            L  L L    + + +P  I  L +L+
Sbjct: 151 RLRELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIRS-LPASIANLQNLK 209

Query: 140 VLLLYNNSLTGQIPHQLSNLQNAWLLRI-GANYLEDPDPVKFKGMASLTDLWL-DYNLLE 197
            L + N+ L+  +   + +L     L + G   L +  P  F G A L  L L D + L 
Sbjct: 210 SLKIRNSPLS-ALGPAIHHLPKLEELDLRGCTALRNY-PPIFGGRAPLKRLILKDCSNLL 267

Query: 198 KFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPK 257
             P  I   ++L  LDL   + +  +P   +  L     + +  +             P 
Sbjct: 268 TLPLDIHRLTQLEKLDLRGCVNLSRLP-SLIAQLPANCIILVPPHLQAQLDQHRPVARPA 326

Query: 258 L 258
            
Sbjct: 327 E 327

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  146 bits (371), Expect = 2e-37
 Identities = 76/373 (20%), Positives = 120/373 (32%), Gaps = 62/373 (16%)

Query: 89  NLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSL 148
               LN+  + L  ++P  +     +  L +  NNLT+ +P       +LR L +  N L
Sbjct: 41  GNAVLNVGESGL-TTLPDCLP--AHITTLVIPDNNLTS-LPALPP---ELRTLEVSGNQL 93

Query: 149 TGQIPHQLSNLQNAWLLRIGANYLED-PDPVKFKGMASLTDLWLDYNLLEKFPSFIAECS 207
           T  +P     L    +      +L   P          L  LW+  N L   P       
Sbjct: 94  T-SLPVLPPGLLELSIFSNPLTHLPALPS--------GLCKLWIFGNQLTSLPVLP---P 141

Query: 208 KLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNK 267
            L  L +SDN +   +P         L  L    N     +P        L+ L +  N+
Sbjct: 142 GLQELSVSDNQL-ASLPAL----PSELCKLWAYNNQLT-SLPMLP---SGLQELSVSDNQ 192

Query: 268 LTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFC 327
           L  ++P     L  L       N     +P+    L+ L     +     +S+P      
Sbjct: 193 LA-SLPTLPSELYKLWAY----NNRLTSLPALPSGLKELIVSGNR----LTSLPVLPS-- 241

Query: 328 ANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGL 387
             L  L +S N LT SLP+  + L     L +  NQL+               LP  +  
Sbjct: 242 -ELKELMVSGNRLT-SLPMLPSGLL---SLSVYRNQLTR--------------LPESLIH 282

Query: 388 LPKLEYLYLFDNKFSGPIPQQIGNLTNLFDL---QLANNFFNGSIPSTIGNLSSLVKLSL 444
           L     + L  N  S    Q +  +T+        +  +    S P     L       L
Sbjct: 283 LSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWL 342

Query: 445 SSNQLTGTLPPEI 457
              +     P + 
Sbjct: 343 VPAREGEPAPADR 355

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  128 bits (324), Expect = 2e-31
 Identities = 78/383 (20%), Positives = 131/383 (34%), Gaps = 66/383 (17%)

Query: 231 LENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHEN 290
                 LN+ ++     +P  +     +  L +  N LT ++P        L  LE   N
Sbjct: 39  NNGNAVLNVGESGLT-TLPDCL--PAHITTLVIPDNNLT-SLPALPP---ELRTLEVSGN 91

Query: 291 LFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLAS 350
               L P     L  L   +     L +           L  L +  N LT SLP+    
Sbjct: 92  QLTSL-PVLPPGLLELSIFSNPLTHLPALPS-------GLCKLWIFGNQLT-SLPVLPPG 142

Query: 351 LRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIG 410
           L+   EL +S+NQL+               LP       +L  L+ ++N+ +  +P    
Sbjct: 143 LQ---ELSVSDNQLAS--------------LPALPS---ELCKLWAYNNQLTS-LPMLPS 181

Query: 411 NLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLR 470
            L  L    +++N    S+P+    L    KL   +N+LT +LP              L+
Sbjct: 182 GLQEL---SVSDNQLA-SLPTLPSELY---KLWAYNNRLT-SLPALPSG---------LK 224

Query: 471 NVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGD 530
            +  S N  +  LP        L  L  + N+L   +P      +GL  + + +N+L   
Sbjct: 225 ELIVSGNRLTS-LPVLP---SELKELMVSGNRLTS-LPMLP---SGLLSLSVYRNQLT-R 275

Query: 531 ITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNL---SNFRISGNRIKGGIPAELGNLT 587
           +  +L        ++L  N LS        + T+    S   I  +      P E   L 
Sbjct: 276 LPESLIHLSSETTVNLEGNPLSERTLQALREITSAPGYSGPIIRFDMAGASAPRETRALH 335

Query: 588 YLQNLDIFDNQLTGKIPAQLFRS 610
                 +   +     PA  +  
Sbjct: 336 LAAADWLVPAREGEPAPADRWHM 358

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  120 bits (303), Expect = 8e-29
 Identities = 72/346 (20%), Positives = 125/346 (36%), Gaps = 66/346 (19%)

Query: 278 LLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSI 337
           L +   +L   E+    L P  L     +  L +    L S +P        L  LE+S 
Sbjct: 38  LNNGNAVLNVGESGLTTL-PDCLPA--HITTLVIPDNNLTS-LPALPP---ELRTLEVSG 90

Query: 338 NNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLF 397
           N LT SLP+    L ++S        L                      L   L  L++F
Sbjct: 91  NQLT-SLPVLPPGLLELSIFSNPLTHLPA--------------------LPSGLCKLWIF 129

Query: 398 DNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEI 457
            N+ +  +P     L  L    +++N    S+P+    L    KL   +NQLT +LP   
Sbjct: 130 GNQLTS-LPVLPPGLQEL---SVSDNQLA-SLPALPSEL---CKLWAYNNQLT-SLPMLP 180

Query: 458 GNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGL 517
                      L+ +S S N  +  LP        L  L A  N+L   +P      +GL
Sbjct: 181 SG---------LQELSVSDNQLA-SLPTLP---SELYKLWAYNNRLT-SLPALP---SGL 223

Query: 518 TRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKG 577
             + +  NRL   +        +L+ + +  N+L+ +        + L +  +  N++  
Sbjct: 224 KELIVSGNRL-TSLPVLPS---ELKELMVSGNRLTSLPML----PSGLLSLSVYRNQLTR 275

Query: 578 GIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQL 623
            +P  L +L+    +++  N L+ +   Q  R   +         +
Sbjct: 276 -LPESLIHLSSETTVNLEGNPLS-ERTLQALRE--ITSAPGYSGPI 317

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score =  119 bits (299), Expect = 2e-28
 Identities = 69/316 (21%), Positives = 115/316 (36%), Gaps = 63/316 (19%)

Query: 326 FCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEI 385
                  L +  + LT +LP  L     I+ L I +N L+               LP   
Sbjct: 38  LNNGNAVLNVGESGLT-TLPDCL--PAHITTLVIPDNNLTS--------------LPALP 80

Query: 386 GLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLS 445
               +L  L +  N+ +  +P     L  L             +P+    L  L    + 
Sbjct: 81  P---ELRTLEVSGNQLTS-LPVLPPGLLELSIFSNPLT----HLPALPSGLCKL---WIF 129

Query: 446 SNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVG 505
            NQLT +LP              L+ +S S N  +  LP        L  L A  N+L  
Sbjct: 130 GNQLT-SLPVLPPG---------LQELSVSDNQLA-SLPALP---SELCKLWAYNNQLTS 175

Query: 506 PIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNL 565
            +P      +GL  + +  N+L   +        +L  +   +N+L+ +        + L
Sbjct: 176 -LPMLP---SGLQELSVSDNQL-ASLPTLPS---ELYKLWAYNNRLTSLPAL----PSGL 223

Query: 566 SNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSD 625
               +SGNR+   +P     L     L +  N+LT  +P      S L+ L++ RNQL+ 
Sbjct: 224 KELIVSGNRLTS-LPVLPSELK---ELMVSGNRLT-SLPMLP---SGLLSLSVYRNQLTR 275

Query: 626 KIPAEIGKLSRLQYLD 641
            +P  +  LS    ++
Sbjct: 276 -LPESLIHLSSETTVN 290

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium} Length = 622

 Score = 96.9 bits (241), Expect = 3e-21
 Identities = 58/322 (18%), Positives = 103/322 (31%), Gaps = 48/322 (14%)

Query: 84  FSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLL 143
                 L+  +  + +L           + L  L +  N LT+ +P        L+ L +
Sbjct: 100 PPGLLELSIFSNPLTHLPALP-------SGLCKLWIFGNQLTS-LPVLPP---GLQELSV 148

Query: 144 YNNSLTGQIPHQLSNLQNAWLLRIGANYLED-PDPVKFKGMASLTDLWLDYNLLEKFPSF 202
            +N L   +P   S L     L    N L   P        + L +L +  N L   P+ 
Sbjct: 149 SDNQLA-SLPALPSELCK---LWAYNNQLTSLPM-----LPSGLQELSVSDNQLASLPTL 199

Query: 203 IAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLK 262
               S+L  L   +N +   +P         L+ L ++ N     +P       +L+ L 
Sbjct: 200 P---SELYKLWAYNNRLT-SLPAL----PSGLKELIVSGNRLT-SLPVLP---SELKELM 247

Query: 263 LGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPK 322
           +  N+LT ++P        L  L  + N    L P SL +L     +NL+   L S    
Sbjct: 248 VSGNRLT-SLPMLPS---GLLSLSVYRNQLTRL-PESLIHLSSETTVNLEGNPL-SERTL 301

Query: 323 ELGFCANLTFLELSINNLT--GSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGK 380
           +      +T        +        S     +   L  ++  +          +     
Sbjct: 302 QA--LREITSAPGYSGPIIRFDMAGASAPRETRALHLAAADWLVPAREGEPAPADRWH-- 357

Query: 381 LPPEIGLLPKLEYLYLFDNKFS 402
                G     +   LF ++ S
Sbjct: 358 ---MFGQEDNADAFSLFLDRLS 376

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  143 bits (364), Expect = 2e-37
 Identities = 100/528 (18%), Positives = 171/528 (32%), Gaps = 87/528 (16%)

Query: 105 PAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWL 164
           P  + N T L      S+NLT  +P E   +          +      P      +   +
Sbjct: 5   PRNVSN-TFLQEPLRHSSNLTE-MPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAV 62

Query: 165 LRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIP 224
            R+                    +L L+   L   P        L  L  S N +   +P
Sbjct: 63  SRLRDCLDR-----------QAHELELNNLGLSSLPE---LPPHLESLVASCNSLT-ELP 107

Query: 225 IEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEI 284
            E    L++L   N    +            P L +L +  N+L   +P E+   S L+I
Sbjct: 108 -ELPQSLKSLLVDNNNLKALSDLP-------PLLEYLGVSNNQLE-KLP-ELQNSSFLKI 157

Query: 285 LEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSL 344
           ++   N    L P    +   L+ +   +  L   +P EL     LT +    N+L   L
Sbjct: 158 IDVDNNSLKKL-PDLPPS---LEFIAAGNNQL-EELP-ELQNLPFLTAIYADNNSLK-KL 210

Query: 345 PLSLASLRQISELGISNNQLSEIISL----QLQMNDLSG----KLPPEIGLLPKLEYLYL 396
           P    SL     +   NN L E+  L     L            LP        LE L +
Sbjct: 211 PDLPLSLE---SIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPP---SLEALNV 264

Query: 397 FDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPE 456
            DN  +  +P+   +LT L   +   +     +     NL     L+ SSN++  +L   
Sbjct: 265 RDNYLTD-LPELPQSLTFLDVSENIFS----GLSELPPNLY---YLNASSNEIR-SLCDL 315

Query: 457 IGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTG 516
             +         L  ++ S N    +LP        L  L A+ N L   +PE   N   
Sbjct: 316 PPS---------LEELNVSNNKLI-ELPALP---PRLERLIASFNHLAE-VPELPQN--- 358

Query: 517 LTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIK 576
           L ++ +E N L  +  +            + D +++  L        NL    +  N ++
Sbjct: 359 LKQLHVEYNPLR-EFPDIPE--------SVEDLRMNSHLAEVPELPQNLKQLHVETNPLR 409

Query: 577 GGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLS 624
              P    +   +++L +   ++          +  L       +   
Sbjct: 410 -EFPDIPES---VEDLRMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  139 bits (352), Expect = 9e-36
 Identities = 99/525 (18%), Positives = 176/525 (33%), Gaps = 96/525 (18%)

Query: 89  NLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSD----------- 137
            L     + +NL   +P    N         + +      PP  G   +           
Sbjct: 12  FLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD 70

Query: 138 --LRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNL 195
                L L N  L+  +P    +L++   L    N L +      +   SL  L +D N 
Sbjct: 71  RQAHELELNNLGLS-SLPELPPHLES---LVASCNSLTELP----ELPQSLKSLLVDNNN 122

Query: 196 LEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTF 255
           L+           L +L +S+N +     + +L +   L+ +++  NS + ++P      
Sbjct: 123 LKALSDLP---PLLEYLGVSNNQLEK---LPELQNSSFLKIIDVDNNSLK-KLPDLP--- 172

Query: 256 PKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAG 315
           P L  +  G N+L   +P E+  L  L  +    N    L P    +L  +   N     
Sbjct: 173 PSLEFIAAGNNQLE-ELP-ELQNLPFLTAIYADNNSLKKL-PDLPLSLESIVAGNNI--- 226

Query: 316 LNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMN 375
                  EL     LT +    N L  +LP    SL     L + +N L+++        
Sbjct: 227 --LEELPELQNLPFLTTIYADNNLLK-TLPDLPPSLE---ALNVRDNYLTDLPE------ 274

Query: 376 DLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGN 435
                      L   L +L + +N FSG + +   NL  L       N  +  I S    
Sbjct: 275 -----------LPQSLTFLDVSENIFSG-LSELPPNLYYL-------NASSNEIRSLCDL 315

Query: 436 LSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIY 495
             SL +L++S+N+L   LP              L  +  S+N+ + ++P       NL  
Sbjct: 316 PPSLEELNVSNNKLI-ELPALPPR---------LERLIASFNHLA-EVPELP---QNLKQ 361

Query: 496 LTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVL 555
           L    N L    P+   +   L        R++  +     +  +L+ + +  N L    
Sbjct: 362 LHVEYNPLRE-FPDIPESVEDL--------RMNSHLAEVPELPQNLKQLHVETNPLR-EF 411

Query: 556 TSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLT 600
                   +L   R++  R+             L++     +   
Sbjct: 412 PDIPESVEDL---RMNSERVVDPYEFAHETTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  137 bits (346), Expect = 5e-35
 Identities = 88/446 (19%), Positives = 149/446 (33%), Gaps = 70/446 (15%)

Query: 88  PNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNS 147
                L LN   L  S+P    +   L  L  S N+LT  +P     L  L V      +
Sbjct: 71  RQAHELELNNLGLS-SLPELPPH---LESLVASCNSLTE-LPELPQSLKSLLVDNNNLKA 125

Query: 148 LTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECS 207
           L+   P     L+    L +  N LE       +  + L  + +D N L+K P       
Sbjct: 126 LSDLPP----LLEY---LGVSNNQLEKLPE--LQNSSFLKIIDVDNNSLKKLPDLP---P 173

Query: 208 KLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNK 267
            L F+   +N +   +P  +L +L  L  +    NS + ++P        L  +  G N 
Sbjct: 174 SLEFIAAGNNQLE-ELP--ELQNLPFLTAIYADNNSLK-KLPDLP---LSLESIVAGNNI 226

Query: 268 LTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFC 327
           L      E+  L  L  +    NL   L P    +L  L   +       + +P+     
Sbjct: 227 L--EELPELQNLPFLTTIYADNNLLKTL-PDLPPSLEALNVRDNY----LTDLPELPQSL 279

Query: 328 ANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISL--QLQMNDLSG----KL 381
             L   E   + L+   P        +  L  S+N++  +  L   L+  ++S     +L
Sbjct: 280 TFLDVSENIFSGLSELPP-------NLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIEL 332

Query: 382 PPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVK 441
           P       +LE L    N  +  +P+   NL  L    +  N      P    ++  L  
Sbjct: 333 PALPP---RLERLIASFNHLAE-VPELPQNLKQLH---VEYNPLR-EFPDIPESVEDL-- 382

Query: 442 LSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVN 501
               ++ L   +P    N         L+ +    N    + P       ++  L  N  
Sbjct: 383 --RMNSHLA-EVPELPQN---------LKQLHVETNPLR-EFPDIP---ESVEDLRMNSE 426

Query: 502 KLVGPIPESLWNCTGLTRVRLEQNRL 527
           ++V P   +      L     E +  
Sbjct: 427 RVVDPYEFAHETTDKLEDDVFEHHHH 452

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  133 bits (337), Expect = 8e-34
 Identities = 80/390 (20%), Positives = 147/390 (37%), Gaps = 75/390 (19%)

Query: 85  SAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIP--------------- 129
              P+L +L  + N+L   +P    +   L++ + +   L++  P               
Sbjct: 88  ELPPHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKL 146

Query: 130 PEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDL 189
           PE+   S L+++ + NNSL  ++P    +L+    +  G N LE+      + +  LT +
Sbjct: 147 PELQNSSFLKIIDVDNNSLK-KLPDLPPSLEF---IAAGNNQLEELPE--LQNLPFLTAI 200

Query: 190 WLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIP 249
           + D N L+K P        L  +   +N++     + +L +L  L  +    N  +  +P
Sbjct: 201 YADNNSLKKLPD---LPLSLESIVAGNNILEE---LPELQNLPFLTTIYADNNLLK-TLP 253

Query: 250 REIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRL 309
                 P L  L +  N LT  +P+    L+ L++ E   +    L P+       L  L
Sbjct: 254 DLP---PSLEALNVRDNYLT-DLPELPQSLTFLDVSENIFSGLSELPPN-------LYYL 302

Query: 310 NLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIIS 369
           N  S  +  S+        +L  L +S N L   LP     L     L  S N L+E   
Sbjct: 303 NASSNEIR-SLCDLPP---SLEELNVSNNKLI-ELPALPPRLE---RLIASFNHLAE--- 351

Query: 370 LQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSI 429
                      +P        L+ L++  N      P    ++ +   L++ ++     +
Sbjct: 352 -----------VPELPQ---NLKQLHVEYNPLRE-FPDIPESVED---LRMNSHL--AEV 391

Query: 430 PSTIGNLSSLVKLSLSSNQLTGTLPPEIGN 459
           P    NL    +L + +N L    P    +
Sbjct: 392 PELPQNLK---QLHVETNPLR-EFPDIPES 417

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  132 bits (335), Expect = 2e-33
 Identities = 93/512 (18%), Positives = 165/512 (32%), Gaps = 132/512 (25%)

Query: 128 IPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLT 187
           I P     + L+  L ++++LT ++P +  N+++                         T
Sbjct: 3   INPRNVSNTFLQEPLRHSSNLT-EMPVEAENVKS------------------------KT 37

Query: 188 DLWLDYNLLEKF-PSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEG 246
           + +  ++  E+  P    E  ++    L D L                  L L       
Sbjct: 38  EYYNAWSEWERNAPPGNGEQREMAVSRLRDCL------------DRQAHELELNNLGLS- 84

Query: 247 EIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRL 306
            +P      P L  L    N LT  +P+    L +L +   +      L P        L
Sbjct: 85  SLPELP---PHLESLVASCNSLT-ELPELPQSLKSLLVDNNNLKALSDLPPL-------L 133

Query: 307 QRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSE 366
           + L + +  L   +P EL   + L  +++  N+L   LP    SL     +   NNQL E
Sbjct: 134 EYLGVSNNQL-EKLP-ELQNSSFLKIIDVDNNSLK-KLPDLPPSLE---FIAAGNNQLEE 187

Query: 367 IISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFN 426
           +               PE+  LP L  +Y  +N     +P    +L +   +   NN   
Sbjct: 188 L---------------PELQNLPFLTAIYADNNSLKK-LPDLPLSLES---IVAGNNIL- 227

Query: 427 GSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPG 486
                 + NL  L  +   +N L  TLP    +         L  ++   N  +      
Sbjct: 228 -EELPELQNLPFLTTIYADNNLLK-TLPDLPPS---------LEALNVRDNYLTD----- 271

Query: 487 ICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDL 546
                               +PE   + T L       + L     N       L Y++ 
Sbjct: 272 --------------------LPELPQSLTFLDVSENIFSGLSELPPN-------LYYLNA 304

Query: 547 GDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQ 606
             N++  +         +L    +S N++   +PA       L+ L    N L  ++P  
Sbjct: 305 SSNEIRSLC----DLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHLA-EVPEL 355

Query: 607 LFRSSFLIRLNLRRNQLSDKIPAEIGKLSRLQ 638
                 L +L++  N L  + P     +  L+
Sbjct: 356 PQN---LKQLHVEYNPLR-EFPDIPESVEDLR 383

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  117 bits (294), Expect = 4e-28
 Identities = 69/353 (19%), Positives = 115/353 (32%), Gaps = 62/353 (17%)

Query: 83  DFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLL 142
           +      L  ++++ N+L   +P    +   L  +   +N L     PE+  L  L  + 
Sbjct: 148 ELQNSSFLKIIDVDNNSLK-KLPDLPPS---LEFIAAGNNQLEE--LPELQNLPFLTAIY 201

Query: 143 LYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSF 202
             NNSL  ++P    +L++   +  G N LE+      + +  LT ++ D NLL+  P  
Sbjct: 202 ADNNSLK-KLPDLPLSLES---IVAGNNILEELPE--LQNLPFLTTIYADNNLLKTLPDL 255

Query: 203 IAECSKLMFLDLSDN-----------LIMGHIPIEQLTHL-ENLEYLNLTKNSFEGEIPR 250
                 L   D               L +       L+ L  NL YLN + N     +  
Sbjct: 256 PPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIR-SLCD 314

Query: 251 EIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLN 310
                P L  L +  NKL   +P        LE L    N    + P    NL++L    
Sbjct: 315 LP---PSLEELNVSNNKLI-ELPALPP---RLERLIASFNHLAEV-PELPQNLKQLHVEY 366

Query: 311 LKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISL 370
                     P       +L      +N+    +P    +L+   +L +  N L E    
Sbjct: 367 NP----LREFPDIPESVEDLR-----MNSHLAEVPELPQNLK---QLHVETNPLRE---- 410

Query: 371 QLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANN 423
                      P        +E L +   +   P          L D    ++
Sbjct: 411 ----------FPDIPE---SVEDLRMNSERVVDPYEFAHETTDKLEDDVFEHH 450

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  106 bits (266), Expect = 2e-24
 Identities = 72/334 (21%), Positives = 122/334 (36%), Gaps = 38/334 (11%)

Query: 295 LIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQI 354
            I     +   LQ     S+ L + +P E     + T    + +    + P      R++
Sbjct: 2   FINPRNVSNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREM 60

Query: 355 SELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTN 414
           +   + +    +   L+L    LS  LP        LE L    N  +  +P+   +L +
Sbjct: 61  AVSRLRDCLDRQAHELELNNLGLS-SLPELPP---HLESLVASCNSLT-ELPELPQSLKS 115

Query: 415 LFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSF 474
           L          +   P        L  L +S+NQL     PE+ NS        L+ +  
Sbjct: 116 LLVDNNNLKALSDLPP-------LLEYLGVSNNQLEK--LPELQNSSF------LKIIDV 160

Query: 475 SYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNA 534
             N+   KLP       +L ++ A  N+L   +PE L N   LT +  + N L   + + 
Sbjct: 161 DNNSLK-KLPDLP---PSLEFIAAGNNQLEE-LPE-LQNLPFLTAIYADNNSLK-KLPDL 213

Query: 535 LGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDI 594
                 L+ I  G+N L  +          L+      N +K  +P    +   L+ L++
Sbjct: 214 PL---SLESIVAGNNILEEL--PELQNLPFLTTIYADNNLLK-TLPDLPPS---LEALNV 264

Query: 595 FDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIP 628
            DN LT  +P      +FL       + LS+  P
Sbjct: 265 RDNYLT-DLPELPQSLTFLDVSENIFSGLSELPP 297

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score =  103 bits (260), Expect = 8e-24
 Identities = 61/320 (19%), Positives = 107/320 (33%), Gaps = 56/320 (17%)

Query: 83  DFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLL 142
           +    P LTA+  + N+L   +P    +   L  +   +N L     PE+  L  L  + 
Sbjct: 190 ELQNLPFLTAIYADNNSLK-KLPDLPLS---LESIVAGNNILE--ELPELQNLPFLTTIY 243

Query: 143 LYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSF 202
             NN L   +P    +L+   +       L +          SLT L +  N+       
Sbjct: 244 ADNNLLK-TLPDLPPSLEALNVRDNYLTDLPE-------LPQSLTFLDVSENIFSGLSEL 295

Query: 203 IAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLK 262
                 L +L+ S N I   +         +LE LN++ N    E+P      P+L  L 
Sbjct: 296 P---PNLYYLNASSNEI-RSLC----DLPPSLEELNVSNNKLI-ELPALP---PRLERLI 343

Query: 263 LGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPK 322
              N L   +P+      NL+ L    N      P    ++  L+  +       + +P+
Sbjct: 344 ASFNHLA-EVPELPQ---NLKQLHVEYNPLREF-PDIPESVEDLRMNSHL-----AEVPE 393

Query: 323 ELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLP 382
                 NL  L +  N L    P    S+    +L +++ ++ +      +         
Sbjct: 394 LPQ---NLKQLHVETNPLR-EFPDIPESVE---DLRMNSERVVDPYEFAHE--------- 437

Query: 383 PEIGLLPKLEYLYLFDNKFS 402
                  KLE      +   
Sbjct: 438 ----TTDKLEDDVFEHHHHH 453

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A Length = 454

 Score = 93.1 bits (232), Expect = 3e-20
 Identities = 61/294 (20%), Positives = 103/294 (35%), Gaps = 45/294 (15%)

Query: 360 SNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQ 419
            N   + +       ++L+ ++P E   +      Y   +++    P   G    +   +
Sbjct: 6   RNVSNTFLQEPLRHSSNLT-EMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSR 64

Query: 420 LANNFFNG------------SIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPR 467
           L +                 S+P    +L SL     S N LT  LP    + KS     
Sbjct: 65  LRDCLDRQAHELELNNLGLSSLPELPPHLESL---VASCNSLT-ELPELPQSLKS----- 115

Query: 468 FLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRL 527
            L   + +    S  LPP       L YL  + N+L   +PE L N + L  + ++ N L
Sbjct: 116 -LLVDNNNLKALSD-LPP------LLEYLGVSNNQLEK-LPE-LQNSSFLKIIDVDNNSL 165

Query: 528 DGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLT 587
                    + P L++I  G+NQL  +          L+      N +K  +P    +L 
Sbjct: 166 ----KKLPDLPPSLEFIAAGNNQLEEL--PELQNLPFLTAIYADNNSLKK-LPDLPLSL- 217

Query: 588 YLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIPAEIGKLSRLQYLD 641
             +++   +N L      +L    FL  +    N L   +P     L  L   D
Sbjct: 218 --ESIVAGNNILE--ELPELQNLPFLTTIYADNNLLK-TLPDLPPSLEALNVRD 266

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  135 bits (342), Expect = 6e-35
 Identities = 69/380 (18%), Positives = 143/380 (37%), Gaps = 41/380 (10%)

Query: 103 SIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNA 162
            I + +        + +           E   L++ +++   N+++       L + +  
Sbjct: 12  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 71

Query: 163 WLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFI-AECSKLMFLDLSDNLIMG 221
            LL +    +E+ D   F    ++  L++ +N +   P  +      L  L L  N +  
Sbjct: 72  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLS- 130

Query: 222 HIPIEQLTHLENLEYLNLTKNSFEGEIPREI-KTFPKLRHLKLGQNKLTGTIPDEIGLLS 280
            +P     +   L  L+++ N+ E  I  +  +    L++L+L  N+LT  +     L+ 
Sbjct: 131 SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDL--SLIP 186

Query: 281 NLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNL 340
           +L       NL      S+L     ++ L+     + + +         LT L+L  NNL
Sbjct: 187 SLFHANVSYNLL-----STLAIPIAVEELDASHNSI-NVVRG--PVNVELTILKLQHNNL 238

Query: 341 TGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNK 400
           T      L +   + E+ +S N+L +I+                   + +LE LY+ +N+
Sbjct: 239 T-DTA-WLLNYPGLVEVDLSYNELEKIMYHPFVK-------------MQRLERLYISNNR 283

Query: 401 FSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNS 460
               +      +  L  L L++N     +         L  L L  N +  TL     ++
Sbjct: 284 LVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLSTHHT 340

Query: 461 KSDFGPRFLRNVSFSYNNFS 480
                   L+N++ S+N++ 
Sbjct: 341 --------LKNLTLSHNDWD 352

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  126 bits (319), Expect = 8e-32
 Identities = 67/362 (18%), Positives = 127/362 (35%), Gaps = 38/362 (10%)

Query: 64  SISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGI-GNATKLILLDLSSN 122
           +   +   NS +   L      +F  +  LNLN   +   I       A  +  L +  N
Sbjct: 46  NQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFN 103

Query: 123 NLTNPIPPEI-GYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFK 181
            +   +PP +   +  L VL+L  N L+        N      L +  N LE  +   F+
Sbjct: 104 AIRY-LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ 162

Query: 182 GMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTK 241
              SL +L L  N L      ++    L   ++S N       +  L     +E L+ + 
Sbjct: 163 ATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYN------LLSTLAIPIAVEELDASH 214

Query: 242 NSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLG 301
           NS    +   +    +L  LKL  N LT      +     L  ++   N    ++     
Sbjct: 215 NSIN-VVRGPV--NVELTILKLQHNNLT-DTAWLLN-YPGLVEVDLSYNELEKIMYHPFV 269

Query: 302 NLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISN 361
            ++RL+RL + +  L  ++         L  L+LS N+L   +  +     ++  L + +
Sbjct: 270 KMQRLERLYISNNRL-VALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDH 327

Query: 362 NQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLA 421
           N +  +                ++     L+ L L  N +     + +    N+    + 
Sbjct: 328 NSIVTL----------------KLSTHHTLKNLTLSHNDWDCNSLRAL--FRNVARPAVD 369

Query: 422 NN 423
           + 
Sbjct: 370 DA 371

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  116 bits (293), Expect = 2e-28
 Identities = 80/367 (21%), Positives = 129/367 (35%), Gaps = 37/367 (10%)

Query: 287 FHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPL 346
                 +  I S+L        +++     +     E     N   +    + +      
Sbjct: 4   KPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAA 63

Query: 347 SLASLRQISELGISNNQLSEI-----------ISLQLQMNDLSGKLPPEIGL-LPKLEYL 394
            L S RQ+  L +++ Q+ EI             L +  N +   LPP +   +P L  L
Sbjct: 64  LLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTVL 122

Query: 395 YLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLP 454
            L  N  S        N   L  L ++NN        T    +SL  L LSSN+LT  + 
Sbjct: 123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HVD 181

Query: 455 PEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNC 514
                         L + + SYN  S  L   I     +  L A+ N +   +   +   
Sbjct: 182 LS--------LIPSLFHANVSYNLLS-TLAIPI----AVEELDASHNSINV-VRGPV--N 225

Query: 515 TGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNR 574
             LT ++L+ N L    T  L  YP L  +DL  N+L  ++   + K   L    IS NR
Sbjct: 226 VELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNR 283

Query: 575 IKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIPAEIGKL 634
           +   +      +  L+ LD+  N L   +     +   L  L L  N +   +   +   
Sbjct: 284 LV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK--LSTH 338

Query: 635 SRLQYLD 641
             L+ L 
Sbjct: 339 HTLKNLT 345

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score =  111 bits (280), Expect = 1e-26
 Identities = 66/409 (16%), Positives = 137/409 (33%), Gaps = 44/409 (10%)

Query: 225 IEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEI 284
           ++      ++     T++ + G    E  T    + +    + +       +     +E+
Sbjct: 17  LQYDCVFYDVHIDMQTQDVYFG---FEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVEL 73

Query: 285 LEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSL 344
           L  ++     +   +      +Q+L +    +    P        LT L L  N+L+   
Sbjct: 74  LNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDLSSLP 133

Query: 345 PLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEI-GLLPKLEYLYLFDNKFSG 403
                +  +++ L +SNN L  I                +       L+ L L  N+ + 
Sbjct: 134 RGIFHNTPKLTTLSMSNNNLERI--------------EDDTFQATTSLQNLQLSSNRLTH 179

Query: 404 PIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSD 463
            +   +  + +LF   ++ N       ST+    ++ +L  S N +   +   +      
Sbjct: 180 -VD--LSLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSIN-VVRGPVNVE--- 227

Query: 464 FGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLE 523
                L  +   +NN +      +     L+ +  + N+L   +         L R+ + 
Sbjct: 228 -----LTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYIS 280

Query: 524 QNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAEL 583
            NRL   +       P L+ +DL  N L   +  N  +   L N  +  N I   +   L
Sbjct: 281 NNRLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK--L 335

Query: 584 GNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIPAEIG 632
                L+NL +  N         LFR+  + R  +       KI  ++ 
Sbjct: 336 STHHTLKNLTLSHNDWDCNSLRALFRN--VARPAVDDADQHCKIDYQLE 382

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae} Length = 390

 Score = 91.6 bits (228), Expect = 5e-20
 Identities = 52/224 (23%), Positives = 82/224 (36%), Gaps = 17/224 (7%)

Query: 79  LDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDL 138
           L   D S  P+L   N++ N L     + +     +  LD S N++   +   +    +L
Sbjct: 177 LTHVDLSLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSINV-VRGPV--NVEL 228

Query: 139 RVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEK 198
            +L L +N+LT      L N      + +  N LE      F  M  L  L++  N L  
Sbjct: 229 TILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA 286

Query: 199 FPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKL 258
              +      L  LDLS N ++ H+        + LE L L  NS    +   + T   L
Sbjct: 287 LNLYGQPIPTLKVLDLSHNHLL-HVE-RNQPQFDRLENLYLDHNSIV-TLK--LSTHHTL 341

Query: 259 RHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGN 302
           ++L L  N           L  N+      +   H  I   L +
Sbjct: 342 KNLTLSHNDWDCN--SLRALFRNVARPAVDDADQHCKIDYQLEH 383

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  134 bits (338), Expect = 9e-34
 Identities = 70/500 (14%), Positives = 151/500 (30%), Gaps = 57/500 (11%)

Query: 103 SIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNA 162
           +I     N  +  +  ++ ++L   +        +++ L L  N L+      L+     
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK- 59

Query: 163 WLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGH 222
                                  L  L L  N+L +        S L  LDL++N     
Sbjct: 60  -----------------------LELLNLSSNVLYETLDL-ESLSTLRTLDLNNNY---- 91

Query: 223 IPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNL 282
             +++L    ++E L+   N+    +          +++ L  NK+T     + G  S +
Sbjct: 92  --VQELLVGPSIETLHAANNNIS-RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRV 146

Query: 283 EILEFHENLFHGL-IPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLT 341
           + L+   N    +       +   L+ LNL+   +   +  ++   A L  L+LS N L 
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI-YDVKGQV-VFAKLKTLDLSSNKLA 204

Query: 342 GSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKF 401
             +     S   ++ + + NN+L  I                 +     LE+  L  N F
Sbjct: 205 -FMGPEFQSAAGVTWISLRNNKLVLI--------------EKALRFSQNLEHFDLRGNGF 249

Query: 402 SGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSK 461
                +      N     +A               +        +      LP    +  
Sbjct: 250 HCGTLRDF-FSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCE-DLPAPFADRL 307

Query: 462 SDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVR 521
                +    +S   +    +L            + A   +    I +          + 
Sbjct: 308 IALKRKEHALLSGQGSETE-RLECERENQARQREIDALKEQYRTVIDQVTLRKQAKITLE 366

Query: 522 LEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIK-GGIP 580
            ++  LD  ++N    + +L             L     + + L   R    R +   + 
Sbjct: 367 QKKKALDEQVSNGRRAHAELDGTLQQAVGQ-IELQHATEEQSPLQLLRAIVKRYEEMYVE 425

Query: 581 AELGNLTYLQNLDIFDNQLT 600
            +      +++ D++ ++ T
Sbjct: 426 QQSVQNNAIRDWDMYQHKET 445

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  132 bits (334), Expect = 3e-33
 Identities = 60/468 (12%), Positives = 127/468 (27%), Gaps = 41/468 (8%)

Query: 180 FKGMASLTDLWLDYNLLEKFPSFI-AECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLN 238
            +         +  + L++  + +      +  LDLS N +   I    L     LE LN
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPL-SQISAADLAPFTKLELLN 64

Query: 239 LTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPS 298
           L+ N        ++++   LR L L  N +      E+ +  ++E L    N    +   
Sbjct: 65  LSSNVLYE--TLDLESLSTLRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRV--- 114

Query: 299 SLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTG-SLPLSLASLRQISEL 357
           S    +  + + L +  +      + G  + + +L+L +N +   +     AS   +  L
Sbjct: 115 SCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174

Query: 358 GISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFD 417
            +  N + ++                   +  KL+ L L  NK +  +  +  +   +  
Sbjct: 175 NLQYNFIYDV---------------KGQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTW 218

Query: 418 LQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYN 477
           + L NN     I   +    +L    L  N               DF  +  R  + +  
Sbjct: 219 ISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLR-------DFFSKNQRVQTVAKQ 270

Query: 478 NFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGD----ITN 533
                                                  L R         G     +  
Sbjct: 271 TVKKLTGQNEEECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLEC 330

Query: 534 ALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLD 593
                   + ID    Q   V+     +             +   +         L    
Sbjct: 331 ERENQARQREIDALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTL 390

Query: 594 IFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIPAEIGKLSRLQYLD 641
                      A   +S   +   + +      +  +  + + ++  D
Sbjct: 391 QQAVGQIELQHATEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWD 438

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  128 bits (323), Expect = 8e-32
 Identities = 57/383 (14%), Positives = 124/383 (32%), Gaps = 31/383 (8%)

Query: 84  FSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLL 143
                      +  ++L  ++ +   +A  +  LDLS N L+     ++   + L +L L
Sbjct: 6   KQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNL 65

Query: 144 YNNSLTGQIP-HQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSF 202
            +N L   +    LS L+    L +  NY+++          S+  L    N + +    
Sbjct: 66  SSNVLYETLDLESLSTLRT---LDLNNNYVQE-----LLVGPSIETLHAANNNISRVSCS 117

Query: 203 IAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEG-EIPREIKTFPKLRHL 261
                    + L++N I   +          ++YL+L  N  +         +   L HL
Sbjct: 118 R--GQGKKNIYLANNKI-TMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHL 174

Query: 262 KLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIP 321
            L  N +   +  ++ + + L+ L+   N     +     +   +  ++L++  L   I 
Sbjct: 175 NLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKL-VLIE 230

Query: 322 KELGFCANLTFLELSINNL-TGSLPLSLASLRQISEL------GISNNQLSEIISLQLQM 374
           K L F  NL   +L  N    G+L    +  +++  +       ++     E     L  
Sbjct: 231 KALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGH 290

Query: 375 NDLSGKLPPEIGLLPKLEYLYLFDNKF-------SGPIPQQIGNLTNLFDLQLANNFFNG 427
                          +L  L   ++         +  +  +  N     ++      +  
Sbjct: 291 YGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKEQYRT 350

Query: 428 SIPSTIGNLSSLVKLSLSSNQLT 450
            I        + + L      L 
Sbjct: 351 VIDQVTLRKQAKITLEQKKKALD 373

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  126 bits (318), Expect = 3e-31
 Identities = 62/393 (15%), Positives = 121/393 (30%), Gaps = 39/393 (9%)

Query: 78  TLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIP-------- 129
                   +  N+  L+L+ N L     A +   TKL LL+LSSN L   +         
Sbjct: 24  QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLDLESLSTLR 83

Query: 130 ---------PEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKF 180
                     E+     +  L   NN+++     +    +N   + +  N +     +  
Sbjct: 84  TLDLNNNYVQELLVGPSIETLHAANNNISRVSCSRGQGKKN---IYLANNKITMLRDLDE 140

Query: 181 KGMASLTDLWLDYNLLEK--FPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLN 238
              + +  L L  N ++   F    A    L  L+L  N I     ++       L+ L+
Sbjct: 141 GCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYD---VKGQVVFAKLKTLD 197

Query: 239 LTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFH-GLIP 297
           L+ N     +  E ++   +  + L  NKL   I   +    NLE  +   N FH G + 
Sbjct: 198 LSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLR 255

Query: 298 SSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISEL 357
                 +R+Q +  ++  +     +    C   T              L      ++  L
Sbjct: 256 DFFSKNQRVQTVAKQT--VKKLTGQNEEECTVPTLGHYGAYCCE---DLPAPFADRLIAL 310

Query: 358 GISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFD 417
               + L      + +      +L  E     +   +     ++   I Q          
Sbjct: 311 KRKEHALLSGQGSETE------RLECERENQARQREIDALKEQYRTVIDQVTLRKQAKIT 364

Query: 418 LQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLT 450
           L+      +  + +     + L      +    
Sbjct: 365 LEQKKKALDEQVSNGRRAHAELDGTLQQAVGQI 397

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  125 bits (316), Expect = 7e-31
 Identities = 56/380 (14%), Positives = 126/380 (33%), Gaps = 25/380 (6%)

Query: 272 IPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLT 331
           I +     +  +I +  ++     + S   +   ++ L+L    L+     +L     L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 332 FLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISL-QLQMNDLSG----KLPPEIG 386
            L LS N L  +L L   SL  +  L ++NN + E++    ++    +     ++     
Sbjct: 62  LLNLSSNVLYETLDLE--SLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSR- 118

Query: 387 LLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNG-SIPSTIGNLSSLVKLSLS 445
                + +YL +NK +       G  + +  L L  N  +  +      +  +L  L+L 
Sbjct: 119 -GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177

Query: 446 SNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVG 505
            N +   +  ++  +K       L+ +  S N  +  + P       + +++   NKLV 
Sbjct: 178 YNFIY-DVKGQVVFAK-------LKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL 228

Query: 506 PIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNL 565
            I ++L     L    L  N              + +   +    +  +   N  +CT  
Sbjct: 229 -IEKALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTVKKLTGQNEEECTVP 286

Query: 566 SNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTG----KIPAQLFRSSFLIRLNLRRN 621
           +         +         L  L+  +       G    ++  +    +    ++  + 
Sbjct: 287 TLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREIDALKE 346

Query: 622 QLSDKIPAEIGKLSRLQYLD 641
           Q    I     +      L+
Sbjct: 347 QYRTVIDQVTLRKQAKITLE 366

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score =  125 bits (315), Expect = 8e-31
 Identities = 64/433 (14%), Positives = 142/433 (32%), Gaps = 40/433 (9%)

Query: 226 EQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEIL 285
           E   +    +   +T +S +  +    ++   ++ L L  N L+     ++   + LE+L
Sbjct: 4   EIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELL 63

Query: 286 EFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLP 345
               N+ +      L +L  L+ L+L +  +     +EL    ++  L  + NN++    
Sbjct: 64  NLSSNVLYET--LDLESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNNISR--- 113

Query: 346 LSLASLRQISELGISNNQLSEIIS-----------LQLQMNDLSG-KLPPEIGLLPKLEY 393
           +S +  +    + ++NN+++ +             L L++N++              LE+
Sbjct: 114 VSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEH 173

Query: 394 LYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTL 453
           L L  N     +  Q+     L  L L++N     +     + + +  +SL +N+L   +
Sbjct: 174 LNLQYNFIYD-VKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLV-LI 229

Query: 454 PPEIGNSKSDFGPRFLRNVSFSYNNFS-GKLPPGICRGGNLIYLTANVNKLVGPIPESLW 512
              +  S++      L +     N F  G L     +   +  +     K +    E   
Sbjct: 230 EKALRFSQN------LEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE-- 281

Query: 513 NCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSG----VLTSNWGKCTNLSNF 568
            CT  T         +            L+  +       G     L             
Sbjct: 282 ECTVPTLGHYGAYCCEDLPAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREI 341

Query: 569 RISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIP 628
                + +  I            L+     L  +  +   R+   +   L++     ++ 
Sbjct: 342 DALKEQYRTVIDQVTLRKQAKITLEQKKKALD-EQVSNGRRAHAELDGTLQQAVGQIELQ 400

Query: 629 AEIGKLSRLQYLD 641
               + S LQ L 
Sbjct: 401 HATEEQSPLQLLR 413

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 98.0 bits (244), Expect = 8e-22
 Identities = 47/384 (12%), Positives = 93/384 (24%), Gaps = 17/384 (4%)

Query: 79  LDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTN-PIPPEIGYLSD 137
           +     S       + L  N +        G  +++  LDL  N +              
Sbjct: 111 ISRVSCSRGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170

Query: 138 LRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLE 197
           L  L L  N +   +            L + +N L    P  F+  A +T + L  N L 
Sbjct: 171 LEHLNLQYNFIY-DVK-GQVVFAKLKTLDLSSNKLAFMGPE-FQSAAGVTWISLRNNKLV 227

Query: 198 KFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPK 257
                +     L   DL  N        +  +  + ++ +     + +    +  +    
Sbjct: 228 LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAK--QTVKKLTGQNEEECTV 285

Query: 258 LRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGL-------IPSSLGNLRRLQRLN 310
                 G                 L  L+  E+            +     N  R + ++
Sbjct: 286 PTLGHYGAYCCEDL---PAPFADRLIALKRKEHALLSGQGSETERLECERENQARQREID 342

Query: 311 LKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISL 370
                  + I +          LE     L   +     +  ++           E+   
Sbjct: 343 ALKEQYRTVIDQVTLRKQAKITLEQKKKALDEQVSNGRRAHAELDGTLQQAVGQIELQHA 402

Query: 371 QLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIP 430
             + + L                     N             T L +        NG   
Sbjct: 403 TEEQSPLQLLRAIVKRYEEMYVEQQSVQNNAIRDWDMYQHKETQLAEENARLKKLNGEAD 462

Query: 431 STI-GNLSSLVKLSLSSNQLTGTL 453
             +    ++L +L +    L   L
Sbjct: 463 LALASANATLQELVVREQNLASQL 486

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 487

 Score = 42.9 bits (101), Expect = 3e-04
 Identities = 12/64 (18%), Positives = 26/64 (40%)

Query: 578 GIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIPAEIGKLSRL 637
            I     N    +   + D+ L   + +    +  +  L+L  N LS    A++   ++L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 638 QYLD 641
           + L+
Sbjct: 61  ELLN 64

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  133 bits (336), Expect = 2e-33
 Identities = 72/349 (20%), Positives = 129/349 (36%), Gaps = 30/349 (8%)

Query: 136 SDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNL 195
           +  R +L +       +P  +       LL +G N ++  +  +F     L +L L+ N+
Sbjct: 11  AQDRAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENI 67

Query: 196 LEKFPSFI-AECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREI-K 253
           +             L  L L  N +   IP+   T L NL  L++++N     +   + +
Sbjct: 68  VSAVEPGAFNNLFNLRTLGLRSNRL-KLIPLGVFTGLSNLTKLDISENKIV-ILLDYMFQ 125

Query: 254 TFPKLRHLKLGQNKLTGTIPDEI-GLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLK 312
               L+ L++G N L   I       L++LE L   +     +   +L +L  L  L L+
Sbjct: 126 DLYNLKSLEVGDNDLV-YISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLR 184

Query: 313 SAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQL 372
              +N+           L  LE+S      ++  +      ++ L I++  L+ +  L +
Sbjct: 185 HLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAV 244

Query: 373 QMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPST 432
           +              L  L +L L  N  S      +  L  L ++QL         P  
Sbjct: 245 RH-------------LVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYA 291

Query: 433 IGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGP-RFLRNVSFSYNNFS 480
              L+ L  L++S NQLT TL   +      F     L  +    N  +
Sbjct: 292 FRGLNYLRVLNVSGNQLT-TLEESV------FHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  129 bits (326), Expect = 4e-32
 Identities = 76/306 (24%), Positives = 117/306 (38%), Gaps = 9/306 (2%)

Query: 64  SISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGI-GNATKLILLDLSSN 122
               ++L  + +  TL+  +F++FP+L  L LN N +  ++  G   N   L  L L SN
Sbjct: 33  ETRLLDLGKNRI-KTLNQDEFASFPHLEELELNENIV-SAVEPGAFNNLFNLRTLGLRSN 90

Query: 123 NLTNPIPPEI-GYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFK 181
            L   IP  +   LS+L  L +  N +   + +   +L N   L +G N L       F 
Sbjct: 91  RLKL-IPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFS 149

Query: 182 GMASLTDLWLDYNLLEKFPSFI-AECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLT 240
           G+ SL  L L+   L   P+   +    L+ L L    I   I       L  L+ L ++
Sbjct: 150 GLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNIN-AIRDYSFKRLYRLKVLEIS 208

Query: 241 KNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDE-IGLLSNLEILEFHENLFHGLIPSS 299
              +   +         L  L +    LT  +P   +  L  L  L    N    +  S 
Sbjct: 209 HWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNPISTIEGSM 267

Query: 300 LGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGI 359
           L  L RLQ + L    L    P        L  L +S N LT        S+  +  L +
Sbjct: 268 LHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLIL 327

Query: 360 SNNQLS 365
            +N L+
Sbjct: 328 DSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score =  117 bits (294), Expect = 4e-28
 Identities = 66/321 (20%), Positives = 122/321 (38%), Gaps = 25/321 (7%)

Query: 318 SSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEI---------- 367
            ++P+  G       L+L  N +        AS   + EL ++ N +S +          
Sbjct: 24  VAVPE--GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFN 81

Query: 368 -ISLQLQMNDLSGKLPPEI-GLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFF 425
             +L L+ N L   +P  +   L  L  L + +NK    +     +L NL  L++ +N  
Sbjct: 82  LRTLGLRSNRLK-LIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDL 140

Query: 426 NGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPP 485
                     L+SL +L+L    LT ++P E     +      L  +   + N +  +  
Sbjct: 141 VYISHRAFSGLNSLEQLTLEKCNLT-SIPTE-----ALSHLHGLIVLRLRHLNIN-AIRD 193

Query: 486 GICRG-GNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYI 544
              +    L  L  +    +  +  +      LT + +    L      A+     L+++
Sbjct: 194 YSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLAVRHLVYLRFL 253

Query: 545 DLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIP 604
           +L  N +S +  S   +   L   ++ G ++    P     L YL+ L++  NQLT  + 
Sbjct: 254 NLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLT-TLE 312

Query: 605 AQLFRS-SFLIRLNLRRNQLS 624
             +F S   L  L L  N L+
Sbjct: 313 ESVFHSVGNLETLILDSNPLA 333

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 95.9 bits (239), Expect = 4e-21
 Identities = 60/260 (23%), Positives = 95/260 (36%), Gaps = 14/260 (5%)

Query: 386 GLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLS 445
           G+  +   L L  N+       +  +  +L +L+L  N  +   P    NL +L  L L 
Sbjct: 29  GIPTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLR 88

Query: 446 SNQLTGTLPPEIGNSKSDF-GPRFLRNVSFSYNNFSGKLPPGICRG-GNLIYLTANVNKL 503
           SN+L   +P  +      F G   L  +  S N     L   + +   NL  L    N L
Sbjct: 89  SNRLK-LIPLGV------FTGLSNLTKLDISENKIV-ILLDYMFQDLYNLKSLEVGDNDL 140

Query: 504 VGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCT 563
           V     +      L ++ LE+  L    T AL     L  + L    ++ +   ++ +  
Sbjct: 141 VYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLY 200

Query: 564 NLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRS-SFLIRLNLRRNQ 622
            L    IS       +         L +L I    LT  +P    R   +L  LNL  N 
Sbjct: 201 RLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLT-AVPYLAVRHLVYLRFLNLSYNP 259

Query: 623 LSDKIPAEI-GKLSRLQYLD 641
           +S  I   +  +L RLQ + 
Sbjct: 260 IST-IEGSMLHELLRLQEIQ 278

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  131 bits (332), Expect = 1e-32
 Identities = 69/380 (18%), Positives = 143/380 (37%), Gaps = 41/380 (10%)

Query: 103 SIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNA 162
            I + +        + +           E   L++ +++   N+++       L + +  
Sbjct: 18  CIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQV 77

Query: 163 WLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFI-AECSKLMFLDLSDNLIMG 221
            LL +    +E+ D   F    ++  L++ +N +   P  +      L  L L  N +  
Sbjct: 78  ELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLVLERNDL-S 136

Query: 222 HIPIEQLTHLENLEYLNLTKNSFEGEIPREI-KTFPKLRHLKLGQNKLTGTIPDEIGLLS 280
            +P     +   L  L+++ N+ E  I  +  +    L++L+L  N+LT  +     L+ 
Sbjct: 137 SLPRGIFHNTPKLTTLSMSNNNLE-RIEDDTFQATTSLQNLQLSSNRLT-HVDL--SLIP 192

Query: 281 NLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNL 340
           +L       NL      S+L     ++ L+     + + +         LT L+L  NNL
Sbjct: 193 SLFHANVSYNLL-----STLAIPIAVEELDASHNSI-NVVRG--PVNVELTILKLQHNNL 244

Query: 341 TGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNK 400
           T      L +   + E+ +S N+L +I+                   + +LE LY+ +N+
Sbjct: 245 T-DTA-WLLNYPGLVEVDLSYNELEKIMYHPFVK-------------MQRLERLYISNNR 289

Query: 401 FSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNS 460
               +      +  L  L L++N     +         L  L L  N +  TL     ++
Sbjct: 290 LVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIV-TLKLSTHHT 346

Query: 461 KSDFGPRFLRNVSFSYNNFS 480
                   L+N++ S+N++ 
Sbjct: 347 --------LKNLTLSHNDWD 358

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  122 bits (308), Expect = 2e-29
 Identities = 69/374 (18%), Positives = 132/374 (35%), Gaps = 38/374 (10%)

Query: 64  SISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGI-GNATKLILLDLSSN 122
           +   +   NS +   L      +F  +  LNLN   +   I       A  +  L +  N
Sbjct: 52  NQKIVTFKNSTMR-KLPAALLDSFRQVELLNLNDLQIE-EIDTYAFAYAHTIQKLYMGFN 109

Query: 123 NLTNPIPPEI-GYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFK 181
            +   +PP +   +  L VL+L  N L+        N      L +  N LE  +   F+
Sbjct: 110 AIRY-LPPHVFQNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQ 168

Query: 182 GMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTK 241
              SL +L L  N L      ++    L   ++S NL      +  L     +E L+ + 
Sbjct: 169 ATTSLQNLQLSSNRLTHVD--LSLIPSLFHANVSYNL------LSTLAIPIAVEELDASH 220

Query: 242 NSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLG 301
           NS    +   +    +L  LKL  N LT      +     L  ++   N    ++     
Sbjct: 221 NSIN-VVRGPV--NVELTILKLQHNNLT-DTAWLLN-YPGLVEVDLSYNELEKIMYHPFV 275

Query: 302 NLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISN 361
            ++RL+RL + +  L  ++         L  L+LS N+L   +  +     ++  L + +
Sbjct: 276 KMQRLERLYISNNRL-VALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDH 333

Query: 362 NQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLA 421
           N +  +                ++     L+ L L  N +     + +    N+    + 
Sbjct: 334 NSIVTL----------------KLSTHHTLKNLTLSHNDWDCNSLRAL--FRNVARPAVD 375

Query: 422 NNFFNGSIPSTIGN 435
           +   +  I   + +
Sbjct: 376 DADQHCKIDYQLEH 389

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score =  109 bits (274), Expect = 3e-25
 Identities = 80/368 (21%), Positives = 129/368 (35%), Gaps = 37/368 (10%)

Query: 286 EFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLP 345
                  +  I S+L        +++     +     E     N   +    + +     
Sbjct: 9   VKPRQPEYKCIDSNLQYDCVFYDVHIDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPA 68

Query: 346 LSLASLRQISELGISNNQLSEI-----------ISLQLQMNDLSGKLPPEIGL-LPKLEY 393
             L S RQ+  L +++ Q+ EI             L +  N +   LPP +   +P L  
Sbjct: 69  ALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIR-YLPPHVFQNVPLLTV 127

Query: 394 LYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTL 453
           L L  N  S        N   L  L ++NN        T    +SL  L LSSN+LT  +
Sbjct: 128 LVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLT-HV 186

Query: 454 PPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWN 513
                          L + + SYN  S  L   I     +  L A+ N +   +   +  
Sbjct: 187 DLS--------LIPSLFHANVSYNLLS-TLAIPI----AVEELDASHNSINV-VRGPV-- 230

Query: 514 CTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGN 573
              LT ++L+ N L    T  L  YP L  +DL  N+L  ++   + K   L    IS N
Sbjct: 231 NVELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNN 288

Query: 574 RIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIPAEIGK 633
           R+   +      +  L+ LD+  N L   +     +   L  L L  N +   +   +  
Sbjct: 289 RLV-ALNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LK--LST 343

Query: 634 LSRLQYLD 641
              L+ L 
Sbjct: 344 HHTLKNLT 351

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 90.8 bits (225), Expect = 3e-19
 Identities = 58/297 (19%), Positives = 98/297 (32%), Gaps = 27/297 (9%)

Query: 79  LDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDL 138
           L   D S  P+L   N++ N L     + +     +  LD S N++   +   +    +L
Sbjct: 183 LTHVDLSLIPSLFHANVSYNLL-----STLAIPIAVEELDASHNSINV-VRGPV--NVEL 234

Query: 139 RVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEK 198
            +L L +N+LT      L N      + +  N LE      F  M  L  L++  N L  
Sbjct: 235 TILKLQHNNLT-DTAW-LLNYPGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA 292

Query: 199 FPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKL 258
              +      L  LDLS N ++ H+        + LE L L  NS    +   + T   L
Sbjct: 293 LNLYGQPIPTLKVLDLSHNHLL-HVE-RNQPQFDRLENLYLDHNSIV-TLK--LSTHHTL 347

Query: 259 RHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGN----------LRRLQR 308
           ++L L  N           L  N+      +   H  I   L +                
Sbjct: 348 KNLTLSHNDWDCN--SLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLL 405

Query: 309 LNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLS 365
             +    +   + +  G C+    +    +            L+   +L    N+L 
Sbjct: 406 QYIALTSVVEKVQRAQGRCSATDTINSVQSLSHYITQQGGVPLQGNEQLEAEVNELR 462

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae} Length = 597

 Score = 44.1 bits (104), Expect = 1e-04
 Identities = 44/303 (14%), Positives = 93/303 (30%), Gaps = 24/303 (7%)

Query: 83  DFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLL 142
                P L  L+L+ N+L+  +        +L  L L  N++   +         L+ L 
Sbjct: 296 YGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVT-LKL--STHHTLKNLT 351

Query: 143 LYNNSLTG----QIPHQLSNLQNAWL-LRIGANYLEDPDPVKFKGMASLTDLWLDY---- 193
           L +N         +   ++             +Y  +      +      D  L Y    
Sbjct: 352 LSHNDWDCNSLRALFRNVARPAVDDADQHCKIDYQLEHGLCCKESDKPYLDRLLQYIALT 411

Query: 194 NLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIK 253
           +++EK       CS    ++   +L   +I  +    L+  E L    N    E+ +   
Sbjct: 412 SVVEKVQRAQGRCSATDTINSVQSLSH-YITQQGGVPLQGNEQLEAEVNELRAEVQQ--- 467

Query: 254 TFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKS 313
               L + ++ Q +L   +  EI   +NL      ++       +       L+      
Sbjct: 468 ----LTNEQIQQEQLLQGLHAEI--DTNLRRYRLPKDGLARSSDNLNKVFTHLKERQAFK 521

Query: 314 AGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQ 373
                +   E          +L   N+     L     +Q      ++ +  ++  L+ +
Sbjct: 522 LRETQARRTEA-DAKQKETEDLEQENIALEKQLDNKRAKQAELRQETSLKRQKVKQLEAK 580

Query: 374 MND 376
            N 
Sbjct: 581 KNR 583

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  123 bits (312), Expect = 2e-31
 Identities = 53/323 (16%), Positives = 106/323 (32%), Gaps = 53/323 (16%)

Query: 103 SIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNA 162
           +I     N  +  +  ++ ++L   +        +++ L L  N L+      L+     
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTK- 59

Query: 163 WLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGH 222
                                  L  L L  N+L +        S L  LDL++N     
Sbjct: 60  -----------------------LELLNLSSNVLYETLDL-ESLSTLRTLDLNNNY---- 91

Query: 223 IPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNL 282
             +++L    ++E L+   N+    +          +++ L  NK+T     + G  S +
Sbjct: 92  --VQELLVGPSIETLHAANNNIS-RVSCSR--GQGKKNIYLANNKITMLRDLDEGCRSRV 146

Query: 283 EILEFHENLFHGL-IPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLT 341
           + L+   N    +       +   L+ LNL+   +   +  ++   A L  L+LS N L 
Sbjct: 147 QYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFI-YDVKGQV-VFAKLKTLDLSSNKLA 204

Query: 342 GSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKF 401
             +     S   ++ + + NN+L  I                 +     LE+  L  N F
Sbjct: 205 -FMGPEFQSAAGVTWISLRNNKLVLI--------------EKALRFSQNLEHFDLRGNGF 249

Query: 402 S-GPIPQQIGNLTNLFDLQLANN 423
             G +         +  +     
Sbjct: 250 HCGTLRDFFSKNQRVQTVAKQTV 272

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  116 bits (292), Expect = 9e-29
 Identities = 50/311 (16%), Positives = 108/311 (34%), Gaps = 21/311 (6%)

Query: 272 IPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLT 331
           I +     +  +I +  ++     + S   +   ++ L+L    L+     +L     L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 332 FLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISL-QLQMNDLSG----KLPPEIG 386
            L LS N L     L L SL  +  L ++NN + E++    ++    +     ++     
Sbjct: 62  LLNLSSNVLYE--TLDLESLSTLRTLDLNNNYVQELLVGPSIETLHAANNNISRVSCSR- 118

Query: 387 LLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNG-SIPSTIGNLSSLVKLSLS 445
                + +YL +NK +       G  + +  L L  N  +  +      +  +L  L+L 
Sbjct: 119 -GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ 177

Query: 446 SNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVG 505
            N +   +  ++  +K       L+ +  S N  +  + P       + +++   NKLV 
Sbjct: 178 YNFIY-DVKGQVVFAK-------LKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL 228

Query: 506 PIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNL 565
            I ++L     L    L  N              + +   +    +  +   N  +CT  
Sbjct: 229 -IEKALRFSQNLEHFDLRGNGFHCGTLRDF-FSKNQRVQTVAKQTVKKLTGQNEEECTVP 286

Query: 566 SNFRISGNRIK 576
           +         +
Sbjct: 287 TLGHYGAYCCE 297

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  111 bits (280), Expect = 3e-27
 Identities = 59/291 (20%), Positives = 103/291 (35%), Gaps = 16/291 (5%)

Query: 78  TLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSD 137
                   +  N+  L+L+ N L     A +   TKL LL+LSSN L      ++  LS 
Sbjct: 24  QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYE--TLDLESLST 81

Query: 138 LRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLE 197
           LR L L NN +      +L    +   L    N +      + +      +++L  N + 
Sbjct: 82  LRTLDLNNNYVQ-----ELLVGPSIETLHAANNNISRVSCSRGQ---GKKNIYLANNKIT 133

Query: 198 KFPSF-IAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFP 256
                     S++ +LDL  N I      E     + LE+LNL  N    ++  ++  F 
Sbjct: 134 MLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIY-DVKGQVV-FA 191

Query: 257 KLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGL 316
           KL+ L L  NKL   +  E    + +  +    N     I  +L   + L+  +L+  G 
Sbjct: 192 KLKTLDLSSNKLA-FMGPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGF 249

Query: 317 NSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEI 367
                    F  N     ++   +      +       +          ++
Sbjct: 250 -HCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEECTVPTLGHYGAYCCEDL 299

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  108 bits (271), Expect = 5e-26
 Identities = 52/315 (16%), Positives = 111/315 (35%), Gaps = 38/315 (12%)

Query: 329 NLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLL 388
                +++ ++L  +L     S   + EL +S N LS+I                ++   
Sbjct: 11  RYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQIS-------------AADLAPF 57

Query: 389 PKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQ 448
            KLE L L  N     +   + +L+ L  L L NN+        +    S+  L  ++N 
Sbjct: 58  TKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYV-----QELLVGPSIETLHAANNN 110

Query: 449 LTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRG-GNLIYLTANVNKLVG-P 506
           ++  +    G           +N+  + N  +  L          + YL   +N++    
Sbjct: 111 IS-RVSCSRGQG--------KKNIYLANNKIT-MLRDLDEGCRSRVQYLDLKLNEIDTVN 160

Query: 507 IPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLS 566
             E   +   L  + L+ N +  D+   +     L+ +DL  N+L+  +   +     ++
Sbjct: 161 FAELAASSDTLEHLNLQYNFIY-DVKGQVVF-AKLKTLDLSSNKLA-FMGPEFQSAAGVT 217

Query: 567 NFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDK 626
              +  N++   I   L     L++ D+  N        + F S       + +  +  K
Sbjct: 218 WISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHC-GTLRDFFSKNQRVQTVAKQTVK-K 274

Query: 627 IPAEIGKLSRLQYLD 641
           +  +  +   +  L 
Sbjct: 275 LTGQNEEECTVPTLG 289

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score =  106 bits (268), Expect = 1e-25
 Identities = 45/262 (17%), Positives = 97/262 (37%), Gaps = 21/262 (8%)

Query: 381 LPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLV 440
           +        + +   + D+     +     +  N+ +L L+ N  +    + +   + L 
Sbjct: 2   IHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLE 61

Query: 441 KLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANV 500
            L+LSSN L      ++ +  +      LR +  + N         +  G ++  L A  
Sbjct: 62  LLNLSSNVLYE--TLDLESLST------LRTLDLNNNYVQ-----ELLVGPSIETLHAAN 108

Query: 501 NKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGV-LTSNW 559
           N +   +  S     G   + L  N++        G    +QY+DL  N++  V      
Sbjct: 109 NNISR-VSCSRG--QGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELA 165

Query: 560 GKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLR 619
                L +  +  N I   +  ++     L+ LD+  N+L   +  +   ++ +  ++LR
Sbjct: 166 ASSDTLEHLNLQYNFIY-DVKGQV-VFAKLKTLDLSSNKLA-FMGPEFQSAAGVTWISLR 222

Query: 620 RNQLSDKIPAEIGKLSRLQYLD 641
            N+L   I   +     L++ D
Sbjct: 223 NNKLVL-IEKALRFSQNLEHFD 243

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae} Length = 317

 Score = 44.2 bits (105), Expect = 8e-05
 Identities = 12/64 (18%), Positives = 26/64 (40%)

Query: 578 GIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIPAEIGKLSRL 637
            I     N    +   + D+ L   + +    +  +  L+L  N LS    A++   ++L
Sbjct: 1   AIHEIKQNGNRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKL 60

Query: 638 QYLD 641
           + L+
Sbjct: 61  ELLN 64

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  127 bits (320), Expect = 3e-31
 Identities = 90/537 (16%), Positives = 174/537 (32%), Gaps = 75/537 (13%)

Query: 115 ILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLED 174
            L+D S N L + +P ++       +L +  N ++      + +L    +L I  N ++ 
Sbjct: 3   FLVDRSKNGLIH-VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQY 59

Query: 175 PDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENL 234
            D   FK    L  L L +N L K                                  NL
Sbjct: 60  LDISVFKFNQELEYLDLSHNKLVKISC---------------------------HPTVNL 92

Query: 235 EYLNLTKNSFEGEIPR--EIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLF 292
           ++L+L+ N+F+  +P   E     +L+ L L    L  +    I  L+  ++L      +
Sbjct: 93  KHLDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGETY 151

Query: 293 HGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSL-PLSLASL 351
                     L+     +L      +     +   +  T   L ++N+   L     +  
Sbjct: 152 --GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYF 209

Query: 352 RQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIG- 410
             I     +N +LS +    ++    S     ++     + Y  + + K  G +  +   
Sbjct: 210 LSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFD 269

Query: 411 ----NLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGP 466
               +L  L   Q+ ++ F           S++   + + +                   
Sbjct: 270 YSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISP---- 325

Query: 467 RFLRNVSFSYNNFSGKLPPGICRG-GNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQN 525
               ++ FS N  +       C     L  L   +N+L     + L     +T       
Sbjct: 326 --FLHLDFSNNLLT-DTVFENCGHLTELETLILQMNQL-----KELSKIAEMTTQ----- 372

Query: 526 RLDGDITNALGIYPDLQYIDLGDNQLSGVLTSN-WGKCTNLSNFRISGNRIKGGIPAELG 584
                          LQ +D+  N +S            +L +  +S N +   I   L 
Sbjct: 373 ------------MKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCL- 419

Query: 585 NLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIPAEIGKLSRLQYLD 641
               ++ LD+  N++   IP Q+ +   L  LN+  NQL         +L+ LQ + 
Sbjct: 420 -PPRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIW 474

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  113 bits (285), Expect = 9e-27
 Identities = 90/500 (18%), Positives = 168/500 (33%), Gaps = 37/500 (7%)

Query: 89  NLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSL 148
           +   ++ + N L+  +P  +   T +  L++S N ++     +I  LS LR+L++ +N +
Sbjct: 1   SEFLVDRSKNGLI-HVPKDLSQKTTI--LNISQNYISELWTSDILSLSKLRILIISHNRI 57

Query: 149 TGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFP--SFIAEC 206
                      Q    L +  N L     +      +L  L L +N  +  P        
Sbjct: 58  QYLDISVFKFNQELEYLDLSHNKLVK---ISCHPTVNLKHLDLSFNAFDALPICKEFGNM 114

Query: 207 SKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQN 266
           S+L FL LS   +     +  + HL   + L +   ++  +   + +         L   
Sbjct: 115 SQLKFLGLSTTHL-EKSSVLPIAHLNISKVLLVLGETYGEKE--DPEGLQDFNTESLHIV 171

Query: 267 KLTGTIPDEI-----GLLSNLEILEFHENLFHGL------IPSSLGNLRRLQRLNLKSAG 315
             T      I       ++NLE+      L          I + L    +L  L L +  
Sbjct: 172 FPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIE 231

Query: 316 LNS-SIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQM 374
               S  + L    + T    SI+N+       L       +   S   L  +   Q+  
Sbjct: 232 TTWNSFIRILQLVWHTTVWYFSISNVK------LQGQLDFRDFDYSGTSLKALSIHQVVS 285

Query: 375 NDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIG 434
           +           +   +       +            ++    L  +NN    ++    G
Sbjct: 286 DVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHLDFSNNLLTDTVFENCG 345

Query: 435 NLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRG-GNL 493
           +L+ L  L L  NQL   L      +      + L+ +  S N+ S     G C    +L
Sbjct: 346 HLTELETLILQMNQLK-ELSKIAEMTT---QMKSLQQLDISQNSVSYDEKKGDCSWTKSL 401

Query: 494 IYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSG 553
           + L  + N L   I   L     +  + L  N++   I   +     LQ +++  NQL  
Sbjct: 402 LSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS 458

Query: 554 VLTSNWGKCTNLSNFRISGN 573
           V    + + T+L    +  N
Sbjct: 459 VPDGIFDRLTSLQKIWLHTN 478

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  101 bits (254), Expect = 6e-23
 Identities = 82/475 (17%), Positives = 146/475 (30%), Gaps = 52/475 (10%)

Query: 78  TLDGFDFSAFPNLTALNLNMNNLVGSIPAGI-GNATKLILLDLSSNNLTNPIPPEIGYLS 136
            L   D  +   L  L ++ N +   +   +     +L  LDLS N L   I        
Sbjct: 35  ELWTSDILSLSKLRILIISHNRI-QYLDISVFKFNQELEYLDLSHNKLVK-IS--CHPTV 90

Query: 137 DLRVLLLYNNSLTGQIPHQ--LSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYN 194
           +L+ L L  N+    +P      N+     L +   +LE    +    +     L +   
Sbjct: 91  NLKHLDLSFNAFD-ALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKVLLVLGE 149

Query: 195 LLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTH----LENLEYLNLTKNSFEGE--- 247
              +               L             L      + NLE  N+     + +   
Sbjct: 150 TYGEKEDPEG-LQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSY 208

Query: 248 ---IPREIKTFPKLRHLKLGQNKLTGTIPDEIGLL---SNLEILEFHENLFHGLIPSSLG 301
              I  +++T PKL +L L   + T      I  L   + +           G +     
Sbjct: 209 FLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDF 268

Query: 302 -----NLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISE 356
                +L+ L    + S              +N+     +++       L  + +     
Sbjct: 269 DYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLH 328

Query: 357 LGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFS--GPIPQQIGNLTN 414
           L  SNN L++              +    G L +LE L L  N+      I +    + +
Sbjct: 329 LDFSNNLLTDT-------------VFENCGHLTELETLILQMNQLKELSKIAEMTTQMKS 375

Query: 415 LFDLQLANNFFNGSIPSTI-GNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVS 473
           L  L ++ N  +            SL+ L++SSN LT T+            P  ++ + 
Sbjct: 376 LQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIF--------RCLPPRIKVLD 427

Query: 474 FSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLD 528
              N     +P  + +   L  L    N+L           T L ++ L  N  D
Sbjct: 428 LHSNKIK-SIPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWD 481

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens} Length = 520

 Score =  101 bits (253), Expect = 9e-23
 Identities = 70/415 (16%), Positives = 142/415 (34%), Gaps = 40/415 (9%)

Query: 57  IQCNEVGSISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLIL 116
           I C+   ++  ++L+ +  D      +F     L  L L+  +L  S    I +     +
Sbjct: 84  ISCHPTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEKSSVLPIAHLNISKV 143

Query: 117 LDLSSNNLTNPIPPE---IGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLE 173
           L +          PE         L ++   N      +   +  + N  L  I     +
Sbjct: 144 LLVLGETYGEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLED 203

Query: 174 DPDPVKFKGMA-----------SLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGH 222
           +        +A           +L ++   +N   +    +   + + +  +S+  + G 
Sbjct: 204 NKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTT-VWYFSISNVKLQGQ 262

Query: 223 IPIEQL----THLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGL 278
           +         T L+ L    +  + F        + F  +       +            
Sbjct: 263 LDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSK 322

Query: 279 LSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCA---NLTFLEL 335
           +S    L+F  NL    +  + G+L  L+ L L+   L   + K         +L  L++
Sbjct: 323 ISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQL-KELSKIAEMTTQMKSLQQLDI 381

Query: 336 SINNLTGSLPLSL-ASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYL 394
           S N+++        +  + +  L +S+N L++ I                  L P+++ L
Sbjct: 382 SQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRC---------------LPPRIKVL 426

Query: 395 YLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQL 449
            L  NK    IP+Q+  L  L +L +A+N            L+SL K+ L +N  
Sbjct: 427 DLHSNKIKS-IPKQVVKLEALQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPW 480

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score =  122 bits (308), Expect = 7e-31
 Identities = 69/311 (22%), Positives = 111/311 (35%), Gaps = 21/311 (6%)

Query: 117 LDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPD 176
           +  S   L   +P ++    D  +L L NN +T        NL+N   L +  N +    
Sbjct: 36  VQCSDLGLEK-VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKIS 92

Query: 177 PVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEY 236
           P  F  +  L  L+L  N L++ P  +     L  L + +N I   +       L  +  
Sbjct: 93  PGAFAPLVKLERLYLSKNQLKELPEKMP--KTLQELRVHENEI-TKVRKSVFNGLNQMIV 149

Query: 237 LNLTKNSF-EGEIPREI-KTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHG 294
           + L  N      I     +   KL ++++    +T TIP   GL  +L  L    N    
Sbjct: 150 VELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQ--GLPPSLTELHLDGNKITK 206

Query: 295 LIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQI 354
           +  +SL  L  L +L L    +++     L    +L  L L+ N L   +P  LA  + I
Sbjct: 207 VDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYI 265

Query: 355 SELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFS-GPIPQQI-GNL 412
             + + NN +S I              P           + LF N      I       +
Sbjct: 266 QVVYLHNNNISAI-------GSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCV 318

Query: 413 TNLFDLQLANN 423
                +QL N 
Sbjct: 319 YVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 93.9 bits (234), Expect = 4e-21
 Identities = 63/346 (18%), Positives = 123/346 (35%), Gaps = 63/346 (18%)

Query: 306 LQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLS 365
           L+ +     GL   +PK+L    +   L+L  N +T        +L+ +  L + NN++S
Sbjct: 33  LRVVQCSDLGL-EKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKIS 89

Query: 366 EIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFF 425
           +I          +         L KLE LYL  N+    +P+       L +L++  N  
Sbjct: 90  KI-----SPGAFAP--------LVKLERLYLSKNQLKE-LPE--KMPKTLQELRVHENEI 133

Query: 426 NGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPP 485
                S    L+ ++ + L +N L                              S  +  
Sbjct: 134 TKVRKSVFNGLNQMIVVELGTNPLK-----------------------------SSGIEN 164

Query: 486 GICRG-GNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYI 544
           G  +G   L Y+      +   IP+ L     LT + L+ N++      +L    +L  +
Sbjct: 165 GAFQGMKKLSYIRIADTNITT-IPQGL--PPSLTELHLDGNKITKVDAASLKGLNNLAKL 221

Query: 545 DLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIP 604
            L  N +S V   +     +L    ++ N++   +P  L +  Y+Q + + +N ++  I 
Sbjct: 222 GLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS-AIG 279

Query: 605 AQLFRSSF-------LIRLNLRRNQLS-DKIPAEI-GKLSRLQYLD 641
           +  F              ++L  N +   +I       +     + 
Sbjct: 280 SNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQ 325

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 86.6 bits (215), Expect = 1e-18
 Identities = 48/257 (18%), Positives = 92/257 (35%), Gaps = 22/257 (8%)

Query: 67  EINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTN 126
            + L N+ +   +    F+    L  L L+ N L   +P  +     L  L +  N +T 
Sbjct: 80  TLILINNKI-SKISPGAFAPLVKLERLYLSKNQLK-ELPEKM--PKTLQELRVHENEITK 135

Query: 127 PIPPEI-GYLSDLRVLLLYNNSLT-GQIPHQ-LSNLQNAWLLRIGANYLEDPDPVKFKGM 183
            +   +   L+ + V+ L  N L    I +     ++    +RI    +           
Sbjct: 136 -VRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTIPQGLP--- 191

Query: 184 ASLTDLWLDYNLLEKFPSFI-AECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKN 242
            SLT+L LD N + K  +      + L  L LS N I   +    L +  +L  L+L  N
Sbjct: 192 PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSI-SAVDNGSLANTPHLRELHLNNN 250

Query: 243 SFEGEIPREIKTFPKLRHLKLGQNKLTG------TIPDEIGLLSNLEILEFHEN--LFHG 294
               ++P  +     ++ + L  N ++         P      ++   +    N   +  
Sbjct: 251 KLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWE 309

Query: 295 LIPSSLGNLRRLQRLNL 311
           + PS+   +     + L
Sbjct: 310 IQPSTFRCVYVRAAVQL 326

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 85.1 bits (211), Expect = 4e-18
 Identities = 37/225 (16%), Positives = 78/225 (34%), Gaps = 20/225 (8%)

Query: 79  LDGFDFSAFPNLTALNLNMNNLVGSIPAGI-GNATKLILLDLSSNNLTN-PIPPEI-GYL 135
           L          L  L ++ N +   +   +     ++I+++L +N L +  I       +
Sbjct: 112 LKELPEKMPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGM 170

Query: 136 SDLRVLLLYNNSLTGQIPHQL-SNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYN 194
             L  + + + ++T  IP  L  +L     L +  N +   D    KG+ +L  L L +N
Sbjct: 171 KKLSYIRIADTNIT-TIPQGLPPSLTE---LHLDGNKITKVDAASLKGLNNLAKLGLSFN 226

Query: 195 LLEKFPSFI-AECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEG------E 247
            +    +   A    L  L L++N ++  +P   L   + ++ + L  N+          
Sbjct: 227 SISAVDNGSLANTPHLRELHLNNNKLV-KVP-GGLADHKYIQVVYLHNNNISAIGSNDFC 284

Query: 248 IPREIKTFPKLRHLKLGQNKLTGT-IPDEI-GLLSNLEILEFHEN 290
            P           + L  N +    I       +     ++    
Sbjct: 285 PPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 83.5 bits (207), Expect = 1e-17
 Identities = 44/193 (22%), Positives = 68/193 (35%), Gaps = 12/193 (6%)

Query: 84  FSAFPNLTALNLNMNNL-VGSIPAGI-GNATKLILLDLSSNNLTNPIPPEIGYLSDLRVL 141
           F+    +  + L  N L    I  G      KL  + ++  N+T  IP   G    L  L
Sbjct: 141 FNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITT-IPQ--GLPPSLTEL 197

Query: 142 LLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPS 201
            L  N +T      L  L N   L +  N +   D         L +L L+ N L K P 
Sbjct: 198 HLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVKVPG 257

Query: 202 FIAECSKLMFLDLSDNLI-----MGHIPIEQLTHLENLEYLNLTKNSFE-GEIPREI-KT 254
            +A+   +  + L +N I         P    T   +   ++L  N  +  EI     + 
Sbjct: 258 GLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRC 317

Query: 255 FPKLRHLKLGQNK 267
                 ++LG  K
Sbjct: 318 VYVRAAVQLGNYK 330

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A* Length = 330

 Score = 53.9 bits (130), Expect = 7e-08
 Identities = 23/126 (18%), Positives = 51/126 (40%), Gaps = 11/126 (8%)

Query: 78  TLDGFDFSAFPNLTALNLNMNNLVGSIPAGI-GNATKLILLDLSSNNLTNPIPPEIGYLS 136
            +D        NL  L L+ N++  ++  G   N   L  L L++N L   +P  +    
Sbjct: 206 KVDAASLKGLNNLAKLGLSFNSI-SAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHK 263

Query: 137 DLRVLLLYNNSLTG------QIPHQLSNLQNAWLLRIGANYLEDPD--PVKFKGMASLTD 188
            ++V+ L+NN+++         P   +   +   + + +N ++  +  P  F+ +     
Sbjct: 264 YIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAA 323

Query: 189 LWLDYN 194
           + L   
Sbjct: 324 VQLGNY 329

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  117 bits (294), Expect = 6e-29
 Identities = 66/310 (21%), Positives = 111/310 (35%), Gaps = 20/310 (6%)

Query: 117 LDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPD 176
           +  S   L   +P EI    D  +L L NN ++         LQ+ + L +  N +    
Sbjct: 38  VQCSDLGLKA-VPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIH 94

Query: 177 PVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEY 236
              F  +  L  L++  N L + P  +   S L+ L + DN I   +P    + L N+  
Sbjct: 95  EKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIHDNRI-RKVPKGVFSGLRNMNC 151

Query: 237 LNLTKNSF-EGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGL 295
           + +  N               KL +L++ + KLT  IP    L   L  L    N    +
Sbjct: 152 IEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLT-GIPK--DLPETLNELHLDHNKIQAI 208

Query: 296 IPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQIS 355
               L    +L RL L    +       L F   L  L L  N L+  +P  L  L+ + 
Sbjct: 209 ELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQ 267

Query: 356 ELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFS-GPIPQQI-GNLT 413
            + +  N ++++      +ND                 + LF+N      +       +T
Sbjct: 268 VVYLHTNNITKV-----GVNDFCPVGFGV--KRAYYNGISLFNNPVPYWEVQPATFRCVT 320

Query: 414 NLFDLQLANN 423
           +   +Q  N 
Sbjct: 321 DRLAIQFGNY 330

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score =  102 bits (257), Expect = 4e-24
 Identities = 64/295 (21%), Positives = 105/295 (35%), Gaps = 24/295 (8%)

Query: 185 SLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSF 244
            L  +      L+  P  I+       LDL +N I   +  +    L++L  L L  N  
Sbjct: 34  HLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDIS-ELRKDDFKGLQHLYALVLVNNKI 90

Query: 245 EGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLR 304
                +      KL+ L + +N L   IP    L S+L  L  H+N    +       LR
Sbjct: 91  SKIHEKAFSPLRKLQKLYISKNHLV-EIPP--NLPSSLVELRIHDNRIRKVPKGVFSGLR 147

Query: 305 RLQRLNLKSAGL-NSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQ 363
            +  + +    L NS           L +L +S   LTG       +L    EL + +N+
Sbjct: 148 NMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLPETLN---ELHLDHNK 204

Query: 364 LSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANN 423
           +  I     ++ DL            KL  L L  N+        +  L  L +L L NN
Sbjct: 205 IQAI-----ELEDLLR--------YSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNN 251

Query: 424 FFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNN 478
             +  +P+ + +L  L  + L +N +T     +           +   +S   N 
Sbjct: 252 KLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 93.2 bits (232), Expect = 7e-21
 Identities = 67/326 (20%), Positives = 121/326 (37%), Gaps = 60/326 (18%)

Query: 306 LQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLS 365
           L+ +     GL  ++PKE+    + T L+L  N+++         L+ +  L + NN++S
Sbjct: 35  LRVVQCSDLGL-KAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKIS 91

Query: 366 EIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFF 425
           +I          S         L KL+ LY+  N     IP  +   ++L +L++ +N  
Sbjct: 92  KI-----HEKAFSP--------LRKLQKLYISKNHLVE-IPPNL--PSSLVELRIHDNRI 135

Query: 426 NGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPP 485
                     L ++  + +  N L                              +    P
Sbjct: 136 RKVPKGVFSGLRNMNCIEMGGNPLE-----------------------------NSGFEP 166

Query: 486 GICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYID 545
           G   G  L YL  +  KL G IP+ L     L  + L+ N++       L  Y  L  + 
Sbjct: 167 GAFDGLKLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLG 223

Query: 546 LGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPA 605
           LG NQ+  +   +      L    +  N++   +PA L +L  LQ + +  N +T K+  
Sbjct: 224 LGHNQIRMIENGSLSFLPTLRELHLDNNKLSR-VPAGLPDLKLLQVVYLHTNNIT-KVGV 281

Query: 606 QLFRS-------SFLIRLNLRRNQLS 624
             F         ++   ++L  N + 
Sbjct: 282 NDFCPVGFGVKRAYYNGISLFNNPVP 307

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 85.8 bits (213), Expect = 2e-18
 Identities = 48/258 (18%), Positives = 88/258 (34%), Gaps = 23/258 (8%)

Query: 67  EINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTN 126
            + L N+ +   +    FS    L  L ++ N+LV  IP  +   + L+ L +  N +  
Sbjct: 82  ALVLVNNKIS-KIHEKAFSPLRKLQKLYISKNHLV-EIPPNL--PSSLVELRIHDNRIRK 137

Query: 127 PIPPEI-GYLSDLRVLLLYNNSLT-GQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMA 184
            +P  +   L ++  + +  N L          +      LRI    L            
Sbjct: 138 -VPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTGIPKDLP---E 193

Query: 185 SLTDLWLDYNLLEKFPSFI-AECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNS 243
           +L +L LD+N ++          SKL  L L  N I   I    L+ L  L  L+L  N 
Sbjct: 194 TLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQI-RMIENGSLSFLPTLRELHLDNNK 252

Query: 244 FEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEI-------GLLSNLEILEFHENL--FHG 294
               +P  +     L+ + L  N +T  +              +    +    N   +  
Sbjct: 253 LS-RVPAGLPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWE 310

Query: 295 LIPSSLGNLRRLQRLNLK 312
           + P++   +     +   
Sbjct: 311 VQPATFRCVTDRLAIQFG 328

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 79.3 bits (196), Expect = 4e-16
 Identities = 38/193 (19%), Positives = 68/193 (35%), Gaps = 13/193 (6%)

Query: 84  FSAFPNLTALNLNMNNL-VGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLL 142
           FS   N+  + +  N L       G  +  KL  L +S   LT  IP ++     L  L 
Sbjct: 143 FSGLRNMNCIEMGGNPLENSGFEPGAFDGLKLNYLRISEAKLTG-IPKDL--PETLNELH 199

Query: 143 LYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSF 202
           L +N +       L      + L +G N +   +      + +L +L LD N L + P+ 
Sbjct: 200 LDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSRVPAG 259

Query: 203 IAECSKLMFLDLSDNLIMGHIPIEQLTHLE------NLEYLNLTKNSFE-GEIPREI-KT 254
           + +   L  + L  N I   + +     +           ++L  N     E+     + 
Sbjct: 260 LPDLKLLQVVYLHTNNIT-KVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRC 318

Query: 255 FPKLRHLKLGQNK 267
                 ++ G  K
Sbjct: 319 VTDRLAIQFGNYK 331

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus} Length = 332

 Score = 50.8 bits (122), Expect = 6e-07
 Identities = 23/126 (18%), Positives = 46/126 (36%), Gaps = 11/126 (8%)

Query: 78  TLDGFDFSAFPNLTALNLNMNNLVGSIPAGI-GNATKLILLDLSSNNLTNPIPPEIGYLS 136
            ++  D   +  L  L L  N +   I  G       L  L L +N L+  +P  +  L 
Sbjct: 207 AIELEDLLRYSKLYRLGLGHNQI-RMIENGSLSFLPTLRELHLDNNKLSR-VPAGLPDLK 264

Query: 137 DLRVLLLYNNSLT----GQIPHQLSNLQNAWL--LRIGANYLEDPD--PVKFKGMASLTD 188
            L+V+ L+ N++T             ++ A+   + +  N +   +  P  F+ +     
Sbjct: 265 LLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLA 324

Query: 189 LWLDYN 194
           +     
Sbjct: 325 IQFGNY 330

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  116 bits (292), Expect = 6e-28
 Identities = 79/402 (19%), Positives = 136/402 (33%), Gaps = 67/402 (16%)

Query: 79  LDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDL 138
            D         LT+L+ + +++   +  GI   T L  L  +SNN+T     ++   ++L
Sbjct: 33  TDTISEEQLATLTSLDCHNSSIT-DMT-GIEKLTGLTKLICTSNNITTL---DLSQNTNL 87

Query: 139 RVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEK 198
             L   +N LT      L+ L     L    N L   D         LT L    N L +
Sbjct: 88  TYLACDSNKLTNLDVTPLTKLTY---LNCDTNKLTKLD---VSQNPLLTYLNCARNTLTE 141

Query: 199 FPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLE------------------NLEYLNLT 240
               ++  ++L  LD   N  +  + +   T L                    L  LN  
Sbjct: 142 ID--VSHNTQLTELDCHLNKKITKLDVTPQTQLTTLDCSFNKITELDVSQNKLLNRLNCD 199

Query: 241 KNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSL 300
            N+   ++   +    +L  L    NKLT  I   +  L+ L   +   N    L  S+L
Sbjct: 200 TNNIT-KLD--LNQNIQLTFLDCSSNKLT-EID--VTPLTQLTYFDCSVNPLTELDVSTL 253

Query: 301 GNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGIS 360
             L  L  +      ++      L     L + +         L ++     Q+  L   
Sbjct: 254 SKLTTLHCIQTDLLEID------LTHNTQLIYFQAEGCRKIKELDVT--HNTQLYLLDCQ 305

Query: 361 NNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQL 420
              ++E+                ++   PKL YLYL + + +  +   + + T L  L  
Sbjct: 306 AAGITEL----------------DLSQNPKLVYLYLNNTELTE-LD--VSHNTKLKSLSC 346

Query: 421 ANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKS 462
            N        S +G + +L     +  Q   T+P E   + S
Sbjct: 347 VNAHIQ-DFSS-VGKIPALNNNFEAEGQTI-TMPKETLTNNS 385

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  110 bits (276), Expect = 7e-26
 Identities = 69/369 (18%), Positives = 128/369 (34%), Gaps = 40/369 (10%)

Query: 88  PNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNS 147
            N  +       +  +          L  LD  ++++T+     I  L+ L  L+  +N+
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITD--MTGIEKLTGLTKLICTSNN 75

Query: 148 LTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECS 207
           +T     Q +NL     L   +N L + D      +  LT L  D N L K    +++  
Sbjct: 76  ITTLDLSQNTNLTY---LACDSNKLTNLD---VTPLTKLTYLNCDTNKLTKLD--VSQNP 127

Query: 208 KLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNK 267
            L +L+ + N +   I +   T L  L+     K +       ++    +L  L    NK
Sbjct: 128 LLTYLNCARNTLT-EIDVSHNTQLTELDCHLNKKITKL-----DVTPQTQLTTLDCSFNK 181

Query: 268 LTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFC 327
           +T     ++     L  L    N    L    L    +L  L+  S  L      ++   
Sbjct: 182 ITE---LDVSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTEI---DVTPL 232

Query: 328 ANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEI------ISLQLQMNDLSGKL 381
             LT+ + S+N LT    L +++L +++ L      L EI        +  Q        
Sbjct: 233 TQLTYFDCSVNPLT---ELDVSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQAEGCRKIK 289

Query: 382 PPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVK 441
             ++    +L  L       +  +   +     L  L L N      +   + + + L  
Sbjct: 290 ELDVTHNTQLYLLDCQAAGIT-ELD--LSQNPKLVYLYLNNTELT-ELD--VSHNTKLKS 343

Query: 442 LSLSSNQLT 450
           LS  +  + 
Sbjct: 344 LSCVNAHIQ 352

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score =  105 bits (263), Expect = 3e-24
 Identities = 77/470 (16%), Positives = 145/470 (30%), Gaps = 89/470 (18%)

Query: 157 SNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSD 216
            N  +              D +  + +A+LT L    + +      I + + L  L  + 
Sbjct: 18  DNFASEVAAAFEMQAT---DTISEEQLATLTSLDCHNSSITDMTG-IEKLTGLTKLICTS 73

Query: 217 NLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEI 276
           N I   + + Q T   NL YL    N     +   +    KL +L    NKLT     ++
Sbjct: 74  NNI-TTLDLSQNT---NLTYLACDSNKLT-NLD--VTPLTKLTYLNCDTNKLT---KLDV 123

Query: 277 GLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELS 336
                L  L    N    +  S    L  L                ++     LT L+ S
Sbjct: 124 SQNPLLTYLNCARNTLTEIDVSHNTQLTELDCHLN-----KKITKLDVTPQTQLTTLDCS 178

Query: 337 INNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYL 396
            N +T    L ++  + ++ L    N ++++                ++    +L +L  
Sbjct: 179 FNKITE---LDVSQNKLLNRLNCDTNNITKL----------------DLNQNIQLTFLDC 219

Query: 397 FDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPE 456
             NK +  I   +  LT L     + N     +   +  LS L  L      L       
Sbjct: 220 SSNKLTE-ID--VTPLTQLTYFDCSVNPLT-ELD--VSTLSKLTTLHCIQTDLL------ 267

Query: 457 IGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTG 516
                          +  ++N               LIY  A   + +  +   + + T 
Sbjct: 268 --------------EIDLTHNT-------------QLIYFQAEGCRKIKELD--VTHNTQ 298

Query: 517 LTRVRLEQNRL-DGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRI 575
           L  +  +   + + D++      P L Y+ L + +L+ +   +    T L +       I
Sbjct: 299 LYLLDCQAAGITELDLSQN----PKLVYLYLNNTELTEL---DVSHNTKLKSLSCVNAHI 351

Query: 576 KGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSD 625
           +      +G +  L N    + Q        L  +S  I ++        
Sbjct: 352 QD-FS-SVGKIPALNNNFEAEGQTITMPKETLTNNSLTIAVSPDLLDQFG 399

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes} Length = 457

 Score = 93.2 bits (232), Expect = 2e-20
 Identities = 67/410 (16%), Positives = 121/410 (29%), Gaps = 60/410 (14%)

Query: 232 ENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENL 291
           +N           +       +    L  L    + +T      I  L+ L  L    N 
Sbjct: 18  DNFASEVAAAFEMQATDTISEEQLATLTSLDCHNSSITDM--TGIEKLTGLTKLICTSNN 75

Query: 292 FHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASL 351
              L    L     L  L   S  L +++   +     LT+L    N LT    L ++  
Sbjct: 76  ITTL---DLSQNTNLTYLACDSNKL-TNLD--VTPLTKLTYLNCDTNKLT---KLDVSQN 126

Query: 352 RQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGN 411
             ++ L  + N L+EI                ++    +L  L    NK    +   +  
Sbjct: 127 PLLTYLNCARNTLTEI----------------DVSHNTQLTELDCHLNKKITKLD--VTP 168

Query: 412 LTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRN 471
            T L  L  + N         +     L +L+  +N +T     ++  +        L  
Sbjct: 169 QTQLTTLDCSFNKITEL---DVSQNKLLNRLNCDTNNITK---LDLNQNIQ------LTF 216

Query: 472 VSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDI 531
           +  S N  + ++         L Y   +VN L       +   + LT +   Q  L    
Sbjct: 217 LDCSSNKLT-EIDVTPLT--QLTYFDCSVNPL---TELDVSTLSKLTTLHCIQTDL---- 266

Query: 532 TNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQN 591
              + +  + Q I         +   +    T L         I      +L     L  
Sbjct: 267 -LEIDLTHNTQLIYFQAEGCRKIKELDVTHNTQLYLLDCQAAGIT---ELDLSQNPKLVY 322

Query: 592 LDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIPAEIGKLSRLQYLD 641
           L + + +LT ++         L  L+     + D     +GK+  L    
Sbjct: 323 LYLNNTELT-ELDVSHNTK--LKSLSCVNAHIQD-FS-SVGKIPALNNNF 367

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  110 bits (277), Expect = 1e-25
 Identities = 62/337 (18%), Positives = 107/337 (31%), Gaps = 48/337 (14%)

Query: 127 PIPPEIGYLSDLRVLLLYNN--SLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMA 184
            I   I     L     YN                +   L   G N  E    +K   + 
Sbjct: 2   SIMLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALP--GENRNEAVSLLKECLIN 59

Query: 185 SLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSF 244
             ++L L+   L   P  +    ++  L+++ N +   +P        +LEYL+   N  
Sbjct: 60  QFSELQLNRLNLSSLPDNL--PPQITVLEITQNAL-ISLPEL----PASLEYLDACDNRL 112

Query: 245 EGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLR 304
              +P        L+HL +  N+LT  +P+       LE +    N    L P    +L 
Sbjct: 113 S-TLPELP---ASLKHLDVDNNQLT-MLPELPA---LLEYINADNNQLTML-PELPTSLE 163

Query: 305 RLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISE----LGIS 360
            L   ++++  L   +P+      +L  L++S N L  SLP          E        
Sbjct: 164 VL---SVRNNQLTF-LPELPE---SLEALDVSTNLLE-SLPAVPVRNHHSEETEIFFRCR 215

Query: 361 NNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQL 420
            N+++               +P  I  L     + L DN  S  I + +   T   D   
Sbjct: 216 ENRITH--------------IPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHG 261

Query: 421 ANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEI 457
              +F+ S      N          +         ++
Sbjct: 262 PRIYFSMSDGQQ--NTLHRPLADAVTAWFPENKQSDV 296

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score =  104 bits (261), Expect = 1e-23
 Identities = 53/288 (18%), Positives = 101/288 (35%), Gaps = 33/288 (11%)

Query: 87  FPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNN 146
               + L LN  NL  S+P  +    ++ +L+++ N L + +P        L  L   +N
Sbjct: 58  INQFSELQLNRLNLS-SLPDNLP--PQITVLEITQNALIS-LPELPA---SLEYLDACDN 110

Query: 147 SLTGQIPHQLSNLQNAWLLRIGANYLED-PDPVKFKGMASLTDLWLDYNLLEKFPSFIAE 205
            L+  +P   ++L++   L +  N L   P+       A L  +  D N L   P     
Sbjct: 111 RLS-TLPELPASLKH---LDVDNNQLTMLPE-----LPALLEYINADNNQLTMLP---EL 158

Query: 206 CSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLR----HL 261
            + L  L + +N +   +P       E+LE L+++ N  E  +P                
Sbjct: 159 PTSLEVLSVRNNQL-TFLP----ELPESLEALDVSTNLLE-SLPAVPVRNHHSEETEIFF 212

Query: 262 KLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIP 321
           +  +N++T  IP+ I  L     +   +N     I  SL         +      + S  
Sbjct: 213 RCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDG 271

Query: 322 KELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIIS 369
           ++      L   +        +    ++ +    E     N  S  + 
Sbjct: 272 QQNTLHRPLA--DAVTAWFPENKQSDVSQIWHAFEHEEHANTFSAFLD 317

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 97.3 bits (242), Expect = 2e-21
 Identities = 62/333 (18%), Positives = 104/333 (31%), Gaps = 84/333 (25%)

Query: 306 LQRLNLKSAGLNSS------IPKELGFC----ANLTFLELSINNLTGSLPLSLASLRQIS 355
           L   N  S   NS          +                + N     L   L  + Q S
Sbjct: 5   LPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECL--INQFS 62

Query: 356 ELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNL 415
           EL ++   LS               LP  +   P++  L +  N     +P+   +L  L
Sbjct: 63  ELQLNRLNLSS--------------LPDNLP--PQITVLEITQNALI-SLPELPASLEYL 105

Query: 416 FDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFS 475
                 +N  + ++P    +L     L + +NQLT  LP              L  ++  
Sbjct: 106 ---DACDNRLS-TLPELPASL---KHLDVDNNQLT-MLPELPAL---------LEYINAD 148

Query: 476 YNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNAL 535
            N  +  LP       +L  L+   N+L   +PE   +                      
Sbjct: 149 NNQLT-MLPELP---TSLEVLSVRNNQLTF-LPELPES---------------------- 181

Query: 536 GIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSN----FRISGNRIKGGIPAELGNLTYLQN 591
                L+ +D+  N L   L +   +  +       FR   NRI   IP  + +L     
Sbjct: 182 -----LEALDVSTNLLES-LPAVPVRNHHSEETEIFFRCRENRITH-IPENILSLDPTCT 234

Query: 592 LDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLS 624
           + + DN L+ +I   L + +     +  R   S
Sbjct: 235 IILEDNPLSSRIRESLSQQTAQPDYHGPRIYFS 267

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 89.3 bits (221), Expect = 8e-19
 Identities = 56/287 (19%), Positives = 93/287 (32%), Gaps = 29/287 (10%)

Query: 87  FPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNN 146
            P +T L +  N L+ S+P    +   L  LD   N L+  +P     L  L    + NN
Sbjct: 79  PPQITVLEITQNALI-SLPELPAS---LEYLDACDNRLST-LPELPASLKHLD---VDNN 130

Query: 147 SLTGQIPHQLSNLQNAWLLRIGANYLED-PDPVKFKGMASLTDLWLDYNLLEKFPSFIAE 205
            LT  +P   + L+    +    N L   P+        SL  L +  N L   P     
Sbjct: 131 QLT-MLPELPALLEY---INADNNQLTMLPE-----LPTSLEVLSVRNNQLTFLPELP-- 179

Query: 206 CSKLMFLDLSDNLIMGHIP--IEQLTHLENLE-YLNLTKNSFEGEIPREIKTFPKLRHLK 262
              L  LD+S NL+   +P    +  H E  E +    +N     IP  I +      + 
Sbjct: 180 -ESLEALDVSTNLL-ESLPAVPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTII 236

Query: 263 LGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPK 322
           L  N L+  I + +   +           F         N       +  +A    +   
Sbjct: 237 LEDNPLSSRIRESLSQQTAQPDYHGPRIYFSMSDGQQ--NTLHRPLADAVTAWFPENKQS 294

Query: 323 ELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIIS 369
           ++    +    E   N  +  L   L+             Q++  + 
Sbjct: 295 DVSQIWHAFEHEEHANTFSAFLD-RLSDTVSARNTSGFREQVAAWLE 340

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 85.4 bits (211), Expect = 1e-17
 Identities = 53/264 (20%), Positives = 95/264 (35%), Gaps = 40/264 (15%)

Query: 387 LLPKLEYLYLFDNKFSGPIPQQIGNLTNLFD----LQLANNFFNGSIPS-TIGNLSSLVK 441
           +LP      L  N F   I     +  + +D      L     N ++       ++   +
Sbjct: 4   MLPINNNFSLSQNSFYNTISGTYADYFSAWDKWEKQALPGENRNEAVSLLKECLINQFSE 63

Query: 442 LSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVN 501
           L L+   L+ +LP  +           +  +  + N     LP       +L YL A  N
Sbjct: 64  LQLNRLNLS-SLPDNLPPQ--------ITVLEITQNALI-SLPELP---ASLEYLDACDN 110

Query: 502 KLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGK 561
           +L   +PE   +   L    ++ N+L   +         L+YI+  +NQL+ +       
Sbjct: 111 RLST-LPELPASLKHL---DVDNNQLT-MLPELPA---LLEYINADNNQLTMLPEL---- 158

Query: 562 CTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFR----SSFLIRLN 617
            T+L    +  N++   +P    +L   + LD+  N L   +PA   R        I   
Sbjct: 159 PTSLEVLSVRNNQLTF-LPELPESL---EALDVSTNLLES-LPAVPVRNHHSEETEIFFR 213

Query: 618 LRRNQLSDKIPAEIGKLSRLQYLD 641
            R N+++  IP  I  L     + 
Sbjct: 214 CRENRITH-IPENILSLDPTCTII 236

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A} Length = 571

 Score = 67.7 bits (165), Expect = 6e-12
 Identities = 53/314 (16%), Positives = 89/314 (28%), Gaps = 27/314 (8%)

Query: 85  SAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLY 144
               +L  L+++ N L   +P        L  ++  +N LT  +P        L VL + 
Sbjct: 117 ELPASLKHLDVDNNQLT-MLPELPAL---LEYINADNNQLTM-LPELPTS---LEVLSVR 168

Query: 145 NNSLTGQIPHQLSNLQNAWLLRIGANYLED--PDPVKFKGM-ASLTDLWLDYNLLEKFPS 201
           NN LT  +P    +L+    L +  N LE     PV+      +        N +   P 
Sbjct: 169 NNQLT-FLPELPESLEA---LDVSTNLLESLPAVPVRNHHSEETEIFFRCRENRITHIPE 224

Query: 202 FIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHL 261
            I        + L DN +      E L+        +  +  F     ++      L   
Sbjct: 225 NILSLDPTCTIILEDNPLS-SRIRESLSQQTAQPDYHGPRIYFSMSDGQQNTLHRPLADA 283

Query: 262 KLGQNKLTGTIPDEIG-LLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSI 320
                        ++  +    E  E             L  L         ++G    +
Sbjct: 284 VTAW--FPENKQSDVSQIWHAFEHEEHANTFSA-----FLDRLSDTVSAR-NTSGFREQV 335

Query: 321 PKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSG- 379
              L   +    L      +      S      ++   +    L    S  L  ND    
Sbjct: 336 AAWLEKLSASAELRQQSFAVAADATESCEDRVALTWNNLRKTLLVHQASEGLFDNDTGAL 395

Query: 380 -KLPPEIGLLPKLE 392
             L  E+  L  LE
Sbjct: 396 LSLGREMFRLEILE 409

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  108 bits (271), Expect = 3e-25
 Identities = 79/393 (20%), Positives = 136/393 (34%), Gaps = 46/393 (11%)

Query: 88  PNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEI-GYLSDLRVLLLYNN 146
            ++  ++L++N++             L  L +        I       LS L +L L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 147 SLTGQIPHQLSNLQNAWLLRIGANYLED---PDPVKFKGMASLTDLWLDYNLLEKFP--S 201
                     + L N  +L +    L+         FK + SL  L L  N ++K    S
Sbjct: 90  QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNF-FKPLTSLEMLVLRDNNIKKIQPAS 148

Query: 202 FIAECSKLMFLDLSDNLIMGHIPIEQLTHLE--NLEYLNLTKN--------SFEGEIPRE 251
           F     +   LDL+ N +   I  E L + +  +   L L+              E    
Sbjct: 149 FFLNMRRFHVLDLTFNKV-KSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGN 207

Query: 252 IKTFPKLRHLKLGQNKLTGTIPDEI-GLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLN 310
                 +  L L  N    ++       ++  +I     +  + +  SS G+       N
Sbjct: 208 PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMG-SSFGHTNFKDPDN 266

Query: 311 LKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEI--- 367
               GL +S          +   +LS + +   L    +    + +L ++ N++++I   
Sbjct: 267 FTFKGLEAS---------GVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDN 317

Query: 368 --------ISLQLQMNDLSGKLPPEI-GLLPKLEYLYLFDNKFSGPIPQQI-GNLTNLFD 417
                   + L L  N L   +   +   L KLE L L  N     +  Q    L NL +
Sbjct: 318 AFWGLTHLLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIRA-LGDQSFLGLPNLKE 375

Query: 418 LQLANNFFNGSIPSTI-GNLSSLVKLSLSSNQL 449
           L L  N    S+P  I   L+SL K+ L +N  
Sbjct: 376 LALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score =  107 bits (269), Expect = 6e-25
 Identities = 73/394 (18%), Positives = 130/394 (32%), Gaps = 39/394 (9%)

Query: 271 TIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKEL-GFCAN 329
            +P+   L +++  ++   N    L  +S   L+ LQ L ++       I        ++
Sbjct: 24  QVPE---LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSS 80

Query: 330 LTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLP 389
           L  L+L  N        +   L  +  L ++   L       L  N            L 
Sbjct: 81  LIILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLD---GAVLSGNFFKP--------LT 129

Query: 390 KLEYLYLFDNKFSGPIPQQI-GNLTNLFDLQLANNFFNGSIPSTIGNLSS--LVKLSLSS 446
            LE L L DN      P     N+     L L  N         + N        L LSS
Sbjct: 130 SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSS 189

Query: 447 NQLTGTLPPEIGNSKSD--FGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLV 504
             L       +G  K    F    +  +  S N F   +            + + +    
Sbjct: 190 ITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS 249

Query: 505 GPIPESLWN---------------CTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDN 549
             +  S  +                +G+    L ++++   + +    + DL+ + L  N
Sbjct: 250 YNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQN 309

Query: 550 QLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFR 609
           +++ +  + +   T+L    +S N +         NL  L+ LD+  N +   +  Q F 
Sbjct: 310 EINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA-LGDQSFL 368

Query: 610 S-SFLIRLNLRRNQLSDKIPAEI-GKLSRLQYLD 641
               L  L L  NQL   +P  I  +L+ LQ + 
Sbjct: 369 GLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIW 401

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 98.3 bits (245), Expect = 6e-22
 Identities = 66/390 (16%), Positives = 122/390 (31%), Gaps = 34/390 (8%)

Query: 184 ASLTDLWLDYNLLEKFPS-FIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKN 242
           A +  + L  N + +      +    L FL +        I       L +L  L L  N
Sbjct: 30  AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN 89

Query: 243 SFEGEIPREI-KTFPKLRHLKLGQNKLTGT-IPDEI-GLLSNLEILEFHENLFHGLIPSS 299
            F  ++          L  L L Q  L G  +       L++LE+L   +N    + P+S
Sbjct: 90  QFL-QLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS 148

Query: 300 L-GNLRRLQRLNLKS-----------AGLNSSIPKELGFCANLTFLELSINNLTGSLPLS 347
              N+RR   L+L                       L   +  T  +++   L      +
Sbjct: 149 FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSI-TLQDMNEYWLGWEKCGN 207

Query: 348 LASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQ 407
                 I+ L +S N   E ++ +        K+   I               F  P   
Sbjct: 208 PFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNFKDPDNF 267

Query: 408 QIGNL--TNLFDLQLANNFFNGSIPSTI-GNLSSLVKLSLSSNQLTGTLPPEI--GNSKS 462
               L  + +    L+ +    ++  ++  + + L +L+L+ N++   +      G +  
Sbjct: 268 TFKGLEASGVKTCDLSKSKIF-ALLKSVFSHFTDLEQLTLAQNEIN-KIDDNAFWGLTH- 324

Query: 463 DFGPRFLRNVSFSYNNFSGKLPPGICRG-GNLIYLTANVNKLVGPIPESLWNCTGLTRVR 521
                 L  ++ S N     +   +      L  L  + N +     +S      L  + 
Sbjct: 325 ------LLKLNLSQNFLG-SIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELA 377

Query: 522 LEQNRLDGDITNALGIYPDLQYIDLGDNQL 551
           L+ N+L             LQ I L  N  
Sbjct: 378 LDTNQLKSVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 95.2 bits (237), Expect = 6e-21
 Identities = 77/407 (18%), Positives = 139/407 (34%), Gaps = 46/407 (11%)

Query: 233 NLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEI-GLLSNLEILEFHENL 291
           ++ Y++L+ NS              L+ LK+ Q      I +     LS+L IL+   N 
Sbjct: 31  HVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQ 90

Query: 292 FHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFC--ANLTFLELSINNLTGSLPLSL- 348
           F  L   +   L  L+ L L    L+ ++     F    +L  L L  NN+    P S  
Sbjct: 91  FLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFF 150

Query: 349 ASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQ 408
            ++R+   L ++ N++  I    L      GK             L L            
Sbjct: 151 LNMRRFHVLDLTFNKVKSICEEDLLN--FQGK---------HFTLLRLSSITL------- 192

Query: 409 IGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRF 468
                      +   +            +S+  L LS N    ++     ++ +    + 
Sbjct: 193 ---------QDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQS 243

Query: 469 L-------RNVSFSYNNFSGKLPPGICRG---GNLIYLTANVNKLVGPIPESLWNCTGLT 518
           L          SF + NF         +G     +     + +K+   +     + T L 
Sbjct: 244 LILSNSYNMGSSFGHTNFK-DPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLE 302

Query: 519 RVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGG 578
           ++ L QN ++    NA      L  ++L  N L  + +  +     L    +S N I+  
Sbjct: 303 QLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRA- 361

Query: 579 IPAEL-GNLTYLQNLDIFDNQLTGKIPAQLFRS-SFLIRLNLRRNQL 623
           +  +    L  L+ L +  NQL   +P  +F   + L ++ L  N  
Sbjct: 362 LGDQSFLGLPNLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPW 407

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 77.9 bits (192), Expect = 3e-15
 Identities = 55/279 (19%), Positives = 95/279 (34%), Gaps = 33/279 (11%)

Query: 64  SISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGI---GNATKLILLDLS 120
           S+  + L ++ +        F        L+L  N +  SI              LL LS
Sbjct: 130 SLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK-SICEEDLLNFQGKHFTLLRLS 188

Query: 121 SNNLTNPIPPEIGY--------LSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLR------ 166
           S  L +     +G+         + +  L L  N     +  +  +      ++      
Sbjct: 189 SITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSN 248

Query: 167 -------IGANYLEDPDPVKFKGM--ASLTDLWLDYNLLEKFPSFI-AECSKLMFLDLSD 216
                   G    +DPD   FKG+  + +    L  + +      + +  + L  L L+ 
Sbjct: 249 SYNMGSSFGHTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQ 308

Query: 217 NLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREI-KTFPKLRHLKLGQNKLTGTIPDE 275
           N I   I       L +L  LNL++N   G I   + +   KL  L L  N +   + D+
Sbjct: 309 NEIN-KIDDNAFWGLTHLLKLNLSQNFL-GSIDSRMFENLDKLEVLDLSYNHIR-ALGDQ 365

Query: 276 I-GLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKS 313
               L NL+ L    N    +       L  LQ++ L +
Sbjct: 366 SFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHT 404

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A* Length = 455

 Score = 66.3 bits (162), Expect = 1e-11
 Identities = 44/210 (20%), Positives = 74/210 (35%), Gaps = 24/210 (11%)

Query: 64  SISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNN 123
           SI+ ++L+ +G   ++    F A       +L ++N               +       N
Sbjct: 213 SITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNS------------YNMGSSFGHTN 260

Query: 124 LTNPIPPEIGYL--SDLRVLLLYNNSLT---GQIPHQLSNLQNAWLLRIGANYLEDPDPV 178
             +P       L  S ++   L  + +      +    ++L+   L     N +   D  
Sbjct: 261 FKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTL---AQNEINKIDDN 317

Query: 179 KFKGMASLTDLWLDYNLLEKFPSFI-AECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYL 237
            F G+  L  L L  N L    S +     KL  LDLS N I   +  +    L NL+ L
Sbjct: 318 AFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHI-RALGDQSFLGLPNLKEL 376

Query: 238 NLTKNSFEGEIPREI-KTFPKLRHLKLGQN 266
            L  N  +  +P  I      L+ + L  N
Sbjct: 377 ALDTNQLK-SVPDGIFDRLTSLQKIWLHTN 405

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score =  105 bits (264), Expect = 3e-25
 Identities = 59/274 (21%), Positives = 93/274 (33%), Gaps = 12/274 (4%)

Query: 117 LDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLE--D 174
           +  +S  LT+ +P  I   S    L L +N L          L     L + +N L    
Sbjct: 12  IRCNSKGLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKG 68

Query: 175 PDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENL 234
                  G  SL  L L +N +    S      +L  LD   + +           L NL
Sbjct: 69  CCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNL 128

Query: 235 EYLNLTKNSFEGEIPREI-KTFPKLRHLKLGQNKLTGTIPDEI-GLLSNLEILEFHENLF 292
            YL+++           I      L  LK+  N        +I   L NL  L+  +   
Sbjct: 129 IYLDISHTHTR-VAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQL 187

Query: 293 HGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASL- 351
             L P++  +L  LQ LN+      S          +L  L+ S+N++  S    L    
Sbjct: 188 EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFP 247

Query: 352 RQISELGISNNQLS---EIISLQLQMNDLSGKLP 382
             ++ L ++ N  +   E  S    + D    L 
Sbjct: 248 SSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLLV 281

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 93.2 bits (232), Expect = 5e-21
 Identities = 54/224 (24%), Positives = 84/224 (37%), Gaps = 12/224 (5%)

Query: 78  TLDGFDFSAFPNLTALNLNMNNL-VGSIPAGI-GNATKLILLDLSSNNLTNPIPPEIGYL 135
           +L    F     LT L+L+ N L      +      T L  LDLS N +   +      L
Sbjct: 42  SLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVIT-MSSNFLGL 100

Query: 136 SDLRVLLLYNNSLTGQIPHQ--LSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDY 193
             L  L   +++L  Q+       +L+N   L I   +        F G++SL  L +  
Sbjct: 101 EQLEHLDFQHSNLK-QMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAG 159

Query: 194 NLLEKF--PSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPRE 251
           N  ++   P    E   L FLDLS   +   +       L +L+ LN++ N+F       
Sbjct: 160 NSFQENFLPDIFTELRNLTFLDLSQCQL-EQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP 218

Query: 252 IKTFPKLRHLKLGQNKLTGTIPDEI--GLLSNLEILEFHENLFH 293
            K    L+ L    N +  T   +      S+L  L   +N F 
Sbjct: 219 YKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 87.0 bits (216), Expect = 6e-19
 Identities = 60/300 (20%), Positives = 107/300 (35%), Gaps = 50/300 (16%)

Query: 185 SLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKN-- 242
           S T++  +   L   P+ I   S    L+L  N +   +P      L  L  L+L+ N  
Sbjct: 8   SGTEIRCNSKGLTSVPTGIP--SSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSSNGL 64

Query: 243 SFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSL-G 301
           SF+G   +       L++L L  N +  T+      L  LE L+F  +    +   S+  
Sbjct: 65  SFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFL 123

Query: 302 NLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSL-PLSLASLRQISELGIS 360
           +LR L  L++       +        ++L  L+++ N+   +  P     LR ++ L +S
Sbjct: 124 SLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 183

Query: 361 NNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQL 420
             QL ++          +         L  L+ L +  N F                  L
Sbjct: 184 QCQLEQL-----SPTAFNS--------LSSLQVLNMSHNNFF----------------SL 214

Query: 421 ANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFS 480
               +          L+SL  L  S N +  T   +         P  L  ++ + N+F+
Sbjct: 215 DTFPYKC--------LNSLQVLDYSLNHIM-TSKKQELQH----FPSSLAFLNLTQNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 81.2 bits (201), Expect = 6e-17
 Identities = 51/245 (20%), Positives = 85/245 (34%), Gaps = 14/245 (5%)

Query: 386 GLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNF--FNGSIPSTIGNLSSLVKLS 443
           G+      L L  NK           LT L  L L++N   F G    +    +SL  L 
Sbjct: 25  GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLD 84

Query: 444 LSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRG-GNLIYLTANVNK 502
           LS N +  T+       +       L ++ F ++N        +     NLIYL  +   
Sbjct: 85  LSFNGVI-TMSSNFLGLEQ------LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTH 137

Query: 503 LVGPIPESLWNCTGLTRVRLEQNR-LDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGK 561
                       + L  +++  N   +  + +      +L ++DL   QL  +  + +  
Sbjct: 138 TRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNS 197

Query: 562 CTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRS--SFLIRLNLR 619
            ++L    +S N            L  LQ LD   N +      Q  +   S L  LNL 
Sbjct: 198 LSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIM-TSKKQELQHFPSSLAFLNLT 256

Query: 620 RNQLS 624
           +N  +
Sbjct: 257 QNDFA 261

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri} Length = 306

 Score = 62.3 bits (152), Expect = 9e-11
 Identities = 42/206 (20%), Positives = 73/206 (35%), Gaps = 18/206 (8%)

Query: 442 LSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRG-GNLIYLTANV 500
           +  +S  LT ++P  I        P     +    N     LP G+      L  L+ + 
Sbjct: 12  IRCNSKGLT-SVPTGI--------PSSATRLELESNKLQ-SLPHGVFDKLTQLTKLSLSS 61

Query: 501 NKL--VGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSN 558
           N L   G   +S +  T L  + L  N +   +++       L+++D   + L  +   +
Sbjct: 62  NGLSFKGCCSQSDFGTTSLKYLDLSFNGV-ITMSSNFLGLEQLEHLDFQHSNLKQMSEFS 120

Query: 559 W-GKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRS-SFLIRL 616
                 NL    IS    +         L+ L+ L +  N         +F     L  L
Sbjct: 121 VFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL 180

Query: 617 NLRRNQLSDKIPAEI-GKLSRLQYLD 641
           +L + QL  ++       LS LQ L+
Sbjct: 181 DLSQCQLE-QLSPTAFNSLSSLQVLN 205

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  107 bits (268), Expect = 7e-25
 Identities = 57/222 (25%), Positives = 90/222 (40%), Gaps = 13/222 (5%)

Query: 78  TLDGFDFSAFPNLTALNLNMNNLVGSIPAGI-GNATKLILLDLSSNNLTNPIPPEI-GYL 135
            +    F    +L  L L+ N++  +I  G       L  L+L  N LT  IP     YL
Sbjct: 78  IIKVNSFKHLRHLEILQLSRNHI-RTIEIGAFNGLANLNTLELFDNRLTT-IPNGAFVYL 135

Query: 136 SDLRVLLLYNNSLT---GQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLD 192
           S L+ L L NN +        +++ +L+   L  +    L       F+G+++L  L L 
Sbjct: 136 SKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGEL--KRLSYISEGAFEGLSNLRYLNLA 193

Query: 193 YNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPRE- 251
              L + P+      KL  LDLS N +   I       L +L+ L + ++  +  I R  
Sbjct: 194 MCNLREIPNL-TPLIKLDELDLSGNHL-SAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNA 250

Query: 252 IKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFH 293
                 L  + L  N LT    D    L +LE +  H N ++
Sbjct: 251 FDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  102 bits (257), Expect = 1e-23
 Identities = 53/230 (23%), Positives = 86/230 (37%), Gaps = 11/230 (4%)

Query: 87  FPNLTALNLNMNNLVGSIPAGI-GNATKLILLDLSSNNLTNPIPPEI-GYLSDLRVLLLY 144
             N   LNL+ N +   I      +   L +L LS N++   I       L++L  L L+
Sbjct: 63  STNTRLLNLHENQIQ-IIKVNSFKHLRHLEILQLSRNHIRT-IEIGAFNGLANLNTLELF 120

Query: 145 NNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWL-DYNLLEKFPSFI 203
           +N LT         L     L +  N +E      F  + SL  L L +   L       
Sbjct: 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGA 180

Query: 204 -AECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREI-KTFPKLRHL 261
               S L +L+L+   +     I  LT L  L+ L+L+ N     I     +    L+ L
Sbjct: 181 FEGLSNLRYLNLAMCNLRE---IPNLTPLIKLDELDLSGNHLS-AIRPGSFQGLMHLQKL 236

Query: 262 KLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNL 311
            + Q+++     +    L +L  +    N    L       L  L+R++L
Sbjct: 237 WMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHL 286

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score =  101 bits (253), Expect = 5e-23
 Identities = 58/250 (23%), Positives = 100/250 (40%), Gaps = 8/250 (3%)

Query: 117 LDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPD 176
           +     NL   +P  I   ++ R+L L+ N +     +   +L++  +L++  N++   +
Sbjct: 48  VICVRKNLRE-VPDGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIE 104

Query: 177 PVKFKGMASLTDLWLDYNLLEKFPS-FIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLE 235
              F G+A+L  L L  N L   P+      SKL  L L +N I   IP      + +L 
Sbjct: 105 IGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPI-ESIPSYAFNRIPSLR 163

Query: 236 YLNLTKNSFEGEIPREI-KTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHG 294
            L+L +      I     +    LR+L L    L   IP+    L  L+ L+   N    
Sbjct: 164 RLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-EIPNLTP-LIKLDELDLSGNHLSA 221

Query: 295 LIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQI 354
           + P S   L  LQ+L +  + +            +L  + L+ NNLT         L  +
Sbjct: 222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHL 281

Query: 355 SELGISNNQL 364
             + + +N  
Sbjct: 282 ERIHLHHNPW 291

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 79.4 bits (196), Expect = 6e-16
 Identities = 56/259 (21%), Positives = 89/259 (34%), Gaps = 37/259 (14%)

Query: 386 GLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLS 445
           G+      L L +N+          +L +L  LQL+ N            L++L  L L 
Sbjct: 61  GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120

Query: 446 SNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVG 505
            N+LT T+P                        F   L         L  L    N +  
Sbjct: 121 DNRLT-TIPNGA---------------------FVY-LS-------KLKELWLRNNPIES 150

Query: 506 PIPESLWNCTGLTRVRL-EQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTN 564
               +      L R+ L E  RL      A     +L+Y++L    L  +   N      
Sbjct: 151 IPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLREI--PNLTPLIK 208

Query: 565 LSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRS-SFLIRLNLRRNQL 623
           L    +SGN +    P     L +LQ L +  +Q+   I    F +   L+ +NL  N L
Sbjct: 209 LDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQ-VIERNAFDNLQSLVEINLAHNNL 267

Query: 624 SDKIPAEI-GKLSRLQYLD 641
           +  +P ++   L  L+ + 
Sbjct: 268 T-LLPHDLFTPLHHLERIH 285

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 76.7 bits (189), Expect = 4e-15
 Identities = 57/299 (19%), Positives = 98/299 (32%), Gaps = 51/299 (17%)

Query: 255 FPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSA 314
             +   +   +  L   +PD  G+ +N  +L  HEN    +  +S  +LR L+ L L   
Sbjct: 42  SNQFSKVICVRKNLR-EVPD--GISTNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSR- 97

Query: 315 GLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQM 374
                                  N++      +   L  ++ L + +N+L+ I       
Sbjct: 98  -----------------------NHIRTIEIGAFNGLANLNTLELFDNRLTTI-----PN 129

Query: 375 NDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTI- 433
                        L KL+ L+L +N            + +L  L L        I     
Sbjct: 130 GAFVY--------LSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAF 181

Query: 434 GNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRG-GN 492
             LS+L  L+L+   L   +P      K       L  +  S N+ S  + PG  +G  +
Sbjct: 182 EGLSNLRYLNLAMCNLR-EIPNLTPLIK-------LDELDLSGNHLS-AIRPGSFQGLMH 232

Query: 493 LIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQL 551
           L  L    +++      +  N   L  + L  N L     +       L+ I L  N  
Sbjct: 233 LQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW 291

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  107 bits (268), Expect = 7e-25
 Identities = 57/224 (25%), Positives = 86/224 (38%), Gaps = 17/224 (7%)

Query: 78  TLDGFDFSAFPNLTALNLNMNNLVGSIPAGI-GNATKLILLDLSSNNLTNPIPPEI-GYL 135
            +    F    +L  L L  N++   I  G       L  L+L  N LT  IP     YL
Sbjct: 89  MIQADTFRHLHHLEVLQLGRNSI-RQIEVGAFNGLASLNTLELFDNWLTV-IPSGAFEYL 146

Query: 136 SDLRVLLLYNNSLTGQIP----HQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWL 191
           S LR L L NN +   IP    +++ +L    L       LE      F+G+ +L  L L
Sbjct: 147 SKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGE--LKKLEYISEGAFEGLFNLKYLNL 203

Query: 192 DYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPRE 251
               ++  P+       L  L++S N     I       L +L+ L +  +     I R 
Sbjct: 204 GMCNIKDMPNL-TPLVGLEELEMSGNHF-PEIRPGSFHGLSSLKKLWVMNSQVS-LIERN 260

Query: 252 -IKTFPKLRHLKLGQNKLTGTIPDEI-GLLSNLEILEFHENLFH 293
                  L  L L  N L+ ++P ++   L  L  L  H N ++
Sbjct: 261 AFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHNPWN 303

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  104 bits (260), Expect = 7e-24
 Identities = 69/253 (27%), Positives = 108/253 (42%), Gaps = 14/253 (5%)

Query: 117 LDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPD 176
           +  +   L+  +P  I   S+ R L L  N++         +L +  +L++G N +   +
Sbjct: 59  VVCTRRGLSE-VPQGI--PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIE 115

Query: 177 PVKFKGMASLTDLWLDYNLLEKFPSFI-AECSKLMFLDLSDNLIMGHIPIEQLTHLENLE 235
              F G+ASL  L L  N L   PS      SKL  L L +N I   IP      + +L 
Sbjct: 116 VGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPI-ESIPSYAFNRVPSLM 174

Query: 236 YLNLTKNSFEGEIPREIKTF---PKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLF 292
            L+L +      I      F     L++L LG   +   +P+    L  LE LE   N F
Sbjct: 175 RLDLGELKKLEYISEG--AFEGLFNLKYLNLGMCNIK-DMPNLTP-LVGLEELEMSGNHF 230

Query: 293 HGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLS-LASL 351
             + P S   L  L++L + ++ ++          A+L  L L+ NNL+ SLP      L
Sbjct: 231 PEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPL 289

Query: 352 RQISELGISNNQL 364
           R + EL + +N  
Sbjct: 290 RYLVELHLHHNPW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score =  103 bits (258), Expect = 1e-23
 Identities = 60/233 (25%), Positives = 88/233 (37%), Gaps = 17/233 (7%)

Query: 87  FPNLTALNLNMNNLVGSIPAGI-GNATKLILLDLSSNNLTNPIPPEI-GYLSDLRVLLLY 144
             N   LNL  NN+   I A    +   L +L L  N++   I       L+ L  L L+
Sbjct: 74  PSNTRYLNLMENNIQ-MIQADTFRHLHHLEVLQLGRNSIRQ-IEVGAFNGLASLNTLELF 131

Query: 145 NNSLTGQIP----HQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWL-DYNLLEKF 199
           +N LT  IP      LS L+    L +  N +E      F  + SL  L L +   LE  
Sbjct: 132 DNWLT-VIPSGAFEYLSKLRE---LWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYI 187

Query: 200 PSFI-AECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKL 258
                     L +L+L    I     +  LT L  LE L ++ N F    P        L
Sbjct: 188 SEGAFEGLFNLKYLNLGMCNIKD---MPNLTPLVGLEELEMSGNHFPEIRPGSFHGLSSL 244

Query: 259 RHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNL 311
           + L +  ++++    +    L++L  L    N    L       LR L  L+L
Sbjct: 245 KKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHL 297

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 84.8 bits (210), Expect = 1e-17
 Identities = 47/242 (19%), Positives = 81/242 (33%), Gaps = 15/242 (6%)

Query: 386 GLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLS 445
           G+     YL L +N           +L +L  LQL  N            L+SL  L L 
Sbjct: 72  GIPSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131

Query: 446 SNQLTGTLPPEIGNSKSDF-GPRFLRNVSFSYNNFSGKLPPGICRG-GNLIYLT-ANVNK 502
            N LT  +P         F     LR +    N     +P        +L+ L    + K
Sbjct: 132 DNWLT-VIPSGA------FEYLSKLRELWLRNNPIE-SIPSYAFNRVPSLMRLDLGELKK 183

Query: 503 LVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKC 562
           L      +      L  + L    +       L     L+ +++  N    +   ++   
Sbjct: 184 LEYISEGAFEGLFNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPEIRPGSFHGL 241

Query: 563 TNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRS-SFLIRLNLRRN 621
           ++L    +  +++          L  L  L++  N L+  +P  LF    +L+ L+L  N
Sbjct: 242 SSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLS-SLPHDLFTPLRYLVELHLHHN 300

Query: 622 QL 623
             
Sbjct: 301 PW 302

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 63.2 bits (154), Expect = 1e-10
 Identities = 35/209 (16%), Positives = 69/209 (33%), Gaps = 18/209 (8%)

Query: 437 SSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRG-GNLIY 495
           +   K+  +   L+  +P  I        P   R ++   NN    +     R   +L  
Sbjct: 54  NQFSKVVCTRRGLS-EVPQGI--------PSNTRYLNLMENNIQ-MIQADTFRHLHHLEV 103

Query: 496 LTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVL 555
           L    N +      +      L  + L  N L    + A      L+ + L +N +  + 
Sbjct: 104 LQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIP 163

Query: 556 TSNWGKCTNLSNFRISG-NRIKGGIPAE-LGNLTYLQNLDIFDNQLTGKIPAQLFRSSFL 613
           +  + +  +L    +    +++  I       L  L+ L++    +   +P  L     L
Sbjct: 164 SYAFNRVPSLMRLDLGELKKLE-YISEGAFEGLFNLKYLNLGMCNIK-DMPN-LTPLVGL 220

Query: 614 IRLNLRRNQLSDKIPAE-IGKLSRLQYLD 641
             L +  N    +I       LS L+ L 
Sbjct: 221 EELEMSGNHFP-EIRPGSFHGLSSLKKLW 248

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  104 bits (260), Expect = 1e-23
 Identities = 83/467 (17%), Positives = 144/467 (30%), Gaps = 54/467 (11%)

Query: 83  DFSAFPNLTALNLNMNNLVGSIPAGI-GNATKLILLDLSSNNLTNPIPPEIGYLSDLRVL 141
           D S    L  L L+ N +  S+   +      L  LD+S N L N I      ++ LR L
Sbjct: 71  DISFLSELRVLRLSHNRI-RSLDFHVFLFNQDLEYLDVSHNRLQN-ISC--CPMASLRHL 126

Query: 142 LLYNNSLT----GQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKG---MASLTDLWLDYN 194
            L  N        +    L+ L    L    A      D +          L DL   + 
Sbjct: 127 DLSFNDFDVLPVCKEFGNLTKLTFLGL---SAAKFRQLDLLPVAHLHLSCILLDLVSYHI 183

Query: 195 LLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEG----EIPR 250
              +  S     + ++ L    N +        +  L +L+  N+  N            
Sbjct: 184 KGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLS 243

Query: 251 EIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILE--------FHENLFHGLIPSSLGN 302
           E+   P L ++ L   + T     ++        +E          E +       S   
Sbjct: 244 ELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETA 303

Query: 303 LRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNN 362
           L+ L   ++K+     S        A +    LSI++      +   S    + L  + N
Sbjct: 304 LKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQN 363

Query: 363 QLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLAN 422
             ++              +      L +L+ L L  N       +      N+  L+  +
Sbjct: 364 VFTDS-------------VFQGCSTLKRLQTLILQRNGLKN-FFKVALMTKNMSSLETLD 409

Query: 423 NFFN----GSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNN 478
              N     +   T     S++ L+LSSN LTG++   +        P  ++ +    N 
Sbjct: 410 VSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL--------PPKVKVLDLHNNR 461

Query: 479 FSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQN 525
               +P  +     L  L    N+L           T L  + L  N
Sbjct: 462 IM-SIPKDVTHLQALQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score =  103 bits (258), Expect = 2e-23
 Identities = 90/513 (17%), Positives = 159/513 (30%), Gaps = 68/513 (13%)

Query: 103 SIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIP----HQLSN 158
            +P  +   TK   L LS N+++    P+I +LS+LRVL L +N +   +         +
Sbjct: 45  HVPKDLPPRTKA--LSLSQNSISELRMPDISFLSELRVLRLSHNRIR-SLDFHVFLFNQD 101

Query: 159 LQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFP--SFIAECSKLMFLDLSD 216
           L+    L +  N L++   +    MASL  L L +N  +  P        +KL FL LS 
Sbjct: 102 LEY---LDVSHNRLQN---ISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSA 155

Query: 217 NLIMGHIPIEQLTHLE-NLEYLNLTKNSFEGEIPREIKTFP-KLRHLKLGQNKLTGTIPD 274
                 + +  + HL  +   L+L     +G     ++     + HL    N L     +
Sbjct: 156 AKFR-QLDLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVN 214

Query: 275 EIGL------LSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCA 328
                     LSN+++ + +       +         L               K   F  
Sbjct: 215 MSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFW 274

Query: 329 NLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLL 388
                 L+I NLT      +       E   S   L  ++   ++             + 
Sbjct: 275 PRPVEYLNIYNLT------ITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVF 328

Query: 389 PKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQ 448
            ++    L  +           + ++   L    N F  S+      L  L  L L  N 
Sbjct: 329 AEMNIKMLSISDTPFIHMVCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG 388

Query: 449 LTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLV---- 504
           L                                          N+  L      L     
Sbjct: 389 LK-------------------------------NFFKVALMTKNMSSLETLDVSLNSLNS 417

Query: 505 GPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTN 564
                +      +  + L  N L G +   L   P ++ +DL +N++   +  +      
Sbjct: 418 HAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQA 474

Query: 565 LSNFRISGNRIKGGIPAELGNLTYLQNLDIFDN 597
           L    ++ N++K         LT LQ + + DN
Sbjct: 475 LQELNVASNQLKSVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 99.6 bits (248), Expect = 4e-22
 Identities = 88/541 (16%), Positives = 185/541 (34%), Gaps = 89/541 (16%)

Query: 117 LDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPD 176
           +D S+ NLT+ +P ++      + L L  NS++                      L  PD
Sbjct: 36  VDYSNRNLTH-VPKDL--PPRTKALSLSQNSIS---------------------ELRMPD 71

Query: 177 PVKFKGMASLTDLWLDYNLLEKFPSFI-AECSKLMFLDLSDNLIMGHIPIEQLTHLENLE 235
                 ++ L  L L +N +      +      L +LD+S N +  +I    +    +L 
Sbjct: 72  ---ISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHNRL-QNISCCPMA---SLR 124

Query: 236 YLNLTKNSFEGEIPR--EIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFH 293
           +L+L+ N F+  +P   E     KL  L L   K      D + +          + + +
Sbjct: 125 HLDLSFNDFD-VLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSY 181

Query: 294 GLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQ 353
            +      +L+      L      +S+       +      L ++N+     L+  + ++
Sbjct: 182 HIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNI----KLNDENCQR 237

Query: 354 ISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLL---PKLEYLYLFDNKFSGPIPQQIG 410
           +        +   ++++ LQ  + + K   ++        +EYL +++   +  I ++  
Sbjct: 238 LMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEF 297

Query: 411 N-----LTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFG 465
                 L +L    + N  F  S  +     + +    LS +                  
Sbjct: 298 TYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPP------S 351

Query: 466 PRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQN 525
           P     ++F+ N F+       C                            L  + L++N
Sbjct: 352 PSSFTFLNFTQNVFT-DSVFQGCS-----------------------TLKRLQTLILQRN 387

Query: 526 RLDGDITNALGIYPDLQYIDLGDNQL----SGVLTSNWGKCTNLSNFRISGNRIKGGIPA 581
            L  +      +  ++  ++  D  L    S           ++    +S N + G +  
Sbjct: 388 GLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFR 446

Query: 582 ELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIPAEI-GKLSRLQYL 640
            L     ++ LD+ +N++   IP  +     L  LN+  NQL   +P  +  +L+ LQY+
Sbjct: 447 CL--PPKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYI 502

Query: 641 D 641
            
Sbjct: 503 W 503

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 94.9 bits (236), Expect = 1e-20
 Identities = 74/414 (17%), Positives = 146/414 (35%), Gaps = 44/414 (10%)

Query: 57  IQCNEVGSISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLIL 116
           I C  + S+  ++L+ +  D      +F     LT L L+       +   +     L L
Sbjct: 115 ISCCPMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKF-RQLD--LLPVAHLHL 171

Query: 117 LDLSSNNLTNPIPP-EIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLED- 174
             +  + ++  I   E   L      +L+       +     N+    L  +  + ++  
Sbjct: 172 SCILLDLVSYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLN 231

Query: 175 -----------PDPVKFKGMASLTDLWLDYNLLEKFPSF-IAECSKLMFLDLSDNLIMGH 222
                       +  +   + ++T   ++         F       + +L++ +  I   
Sbjct: 232 DENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITER 291

Query: 223 IPIEQLTH----LENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGL 278
           I  E+ T+    L++L   ++    F          F ++    L  +            
Sbjct: 292 IDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPS 351

Query: 279 LSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSIN 338
            S+   L F +N+F   +      L+RLQ L L+  GL  +  K      N++ LE    
Sbjct: 352 PSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGL-KNFFKVALMTKNMSSLETLDV 410

Query: 339 NLT----GSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYL 394
           +L      +   + A    I  L +S+N L+  +                  L PK++ L
Sbjct: 411 SLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSV---------------FRCLPPKVKVL 455

Query: 395 YLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIP-STIGNLSSLVKLSLSSN 447
            L +N+    IP+ + +L  L +L +A+N    S+P      L+SL  + L  N
Sbjct: 456 DLHNNRIMS-IPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDN 507

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus} Length = 562

 Score = 82.6 bits (204), Expect = 1e-16
 Identities = 54/338 (15%), Positives = 110/338 (32%), Gaps = 57/338 (16%)

Query: 79  LDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPP-----EIG 133
               +      L+ + LN  N    +           LL+++  ++           +  
Sbjct: 214 NMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFF 273

Query: 134 YLSDLRVLLLYNNSLTGQIP-----HQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTD 188
           +   +  L +YN ++T +I      +  + L++  +  +            +   A +  
Sbjct: 274 WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNI 333

Query: 189 LWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEI 248
             L  +                                      +  +LN T+N F   +
Sbjct: 334 KMLSISDTPFIHM------------------------VCPPSPSSFTFLNFTQNVFTDSV 369

Query: 249 PREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHEN----LFHGLIPSSLGNLR 304
            +   T  +L+ L L +N L         +  N+  LE  +     L       +     
Sbjct: 370 FQGCSTLKRLQTLILQRNGLK-NFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAE 428

Query: 305 RLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQL 364
            +  LNL S  L  S+ + L     +  L+L  N +  S+P  +  L+ + EL +++NQL
Sbjct: 429 SILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQL 485

Query: 365 SEIISLQLQMNDLSGKLPPEI-GLLPKLEYLYLFDNKF 401
             +              P  +   L  L+Y++L DN +
Sbjct: 486 KSV--------------PDGVFDRLTSLQYIWLHDNPW 509

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 96.0 bits (239), Expect = 1e-21
 Identities = 61/309 (19%), Positives = 104/309 (33%), Gaps = 37/309 (11%)

Query: 118 DLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDP 177
             SS +L + IP  +     ++ L L NN +T      L    N   L + +N +   + 
Sbjct: 37  KGSSGSLNS-IPSGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEE 93

Query: 178 VKFKGMASLTDLWLDYNLLEKFPSFI-AECSKLMFLDLSDNLIMGHIPIEQLTHLENLEY 236
             F  + SL  L L YN L    S      S L FL+L  N           +HL  L+ 
Sbjct: 94  DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQI 153

Query: 237 LNLTKNSFEGEIPREI-KTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGL 295
           L +       +I R+       L  L++  + L    P  +  + N+  L  H      L
Sbjct: 154 LRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILL 213

Query: 296 IPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQIS 355
           +   +     ++ L L+   L++                   + L+     SL       
Sbjct: 214 LEIFVDVTSSVECLELRDTDLDT----------------FHFSELSTGETNSLIKKFTFR 257

Query: 356 ELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQI-GNLTN 414
            + I++  L ++                 +  +  L  L    N+    +P  I   LT+
Sbjct: 258 NVKITDESLFQV--------------MKLLNQISGLLELEFSRNQLKS-VPDGIFDRLTS 302

Query: 415 LFDLQLANN 423
           L  + L  N
Sbjct: 303 LQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 94.8 bits (236), Expect = 3e-21
 Identities = 59/289 (20%), Positives = 101/289 (34%), Gaps = 41/289 (14%)

Query: 87  FPNLTALNLNMNNLVGSIPAGI-GNATKLILLDLSSNNLTNPIPPEI-GYLSDLRVLLLY 144
              + +L+L+ N +   I          L  L L+SN +   I  +    L  L  L L 
Sbjct: 51  TEAVKSLDLSNNRI-TYISNSDLQRCVNLQALVLTSNGINT-IEEDSFSSLGSLEHLDLS 108

Query: 145 NNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFP--SF 202
            N         LSNL ++W                FK ++SLT L L  N  +     S 
Sbjct: 109 YN--------YLSNLSSSW----------------FKPLSSLTFLNLLGNPYKTLGETSL 144

Query: 203 IAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLK 262
            +  +KL  L + +      I  +    L  LE L +  +  +   P+ +K+   + HL 
Sbjct: 145 FSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLI 204

Query: 263 LGQNKLTGTIPDEI-GLLSNLEILEFHENLFHG--------LIPSSLGNLRRLQRLNLKS 313
           L   +    + +    + S++E LE  +                +SL      + + +  
Sbjct: 205 LHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITD 263

Query: 314 AGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNN 362
             L   + K L   + L  LE S N L          L  + ++ +  N
Sbjct: 264 ESL-FQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 94.4 bits (235), Expect = 4e-21
 Identities = 61/263 (23%), Positives = 99/263 (37%), Gaps = 30/263 (11%)

Query: 207 SKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREI-KTFPKLRHLKLGQ 265
             +  LDLS+N I  +I    L    NL+ L LT N     I  +   +   L HL L  
Sbjct: 52  EAVKSLDLSNNRI-TYISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSY 109

Query: 266 NKLTGTIPDEI-GLLSNLEILEFHENLFHGLIPSSL-GNLRRLQRLNLKSAGLNSSIPKE 323
           N L+  +       LS+L  L    N +  L  +SL  +L +LQ L + +    + I ++
Sbjct: 110 NYLS-NLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRK 168

Query: 324 -LGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLP 382
                  L  LE+  ++L    P SL S++ +S L +   Q                 L 
Sbjct: 169 DFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI--------------LLL 214

Query: 383 PEI-GLLPKLEYLYLFDNKFSGPIPQQI-----GNLTNLFDLQLANNFFNG--SIPSTIG 434
                +   +E L L D         ++      +L   F  +           +   + 
Sbjct: 215 EIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLN 274

Query: 435 NLSSLVKLSLSSNQLTGTLPPEI 457
            +S L++L  S NQL  ++P  I
Sbjct: 275 QISGLLELEFSRNQLK-SVPDGI 296

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 88.6 bits (220), Expect = 3e-19
 Identities = 51/249 (20%), Positives = 85/249 (34%), Gaps = 21/249 (8%)

Query: 78  TLDGFDFSAFPNLTALNLNMNNLVGSIPAGI-GNATKLILLDLSSNNLTNPIPPEI-GYL 135
            +   D     NL AL L  N +  +I      +   L  LDLS N L+N +       L
Sbjct: 66  YISNSDLQRCVNLQALVLTSNGIN-TIEEDSFSSLGSLEHLDLSYNYLSN-LSSSWFKPL 123

Query: 136 SDLRVLLLYNNSLT----GQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWL 191
           S L  L L  N         +   L+ LQ   +  +  +         F G+  L +L +
Sbjct: 124 SSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNM--DTFTKIQRKDFAGLTFLEELEI 181

Query: 192 DYNLLEKFPSFI-AECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPR 250
           D + L+ +          +  L L     +  +    +    ++E L L     +     
Sbjct: 182 DASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFS 240

Query: 251 EIKT--------FPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGN 302
           E+ T            R++K+    L   +   +  +S L  LEF  N    +       
Sbjct: 241 ELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLELEFSRNQLKSVPDGIFDR 299

Query: 303 LRRLQRLNL 311
           L  LQ++ L
Sbjct: 300 LTSLQKIWL 308

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 83.6 bits (207), Expect = 1e-17
 Identities = 64/327 (19%), Positives = 112/327 (34%), Gaps = 66/327 (20%)

Query: 318 SSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDL 377
           +SIP   G    +  L+LS N +T      L     +  L +++N ++ I     + +  
Sbjct: 44  NSIPS--GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTI-----EEDSF 96

Query: 378 SGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTI-GNL 436
           S         L  LE+L L  N  S                         ++ S+    L
Sbjct: 97  SS--------LGSLEHLDLSYNYLS-------------------------NLSSSWFKPL 123

Query: 437 SSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRG-GNLIY 495
           SSL  L+L  N    TL      S        L+ +     +   K+      G   L  
Sbjct: 124 SSLTFLNLLGNPYK-TLGETSLFS----HLTKLQILRVGNMDTFTKIQRKDFAGLTFLEE 178

Query: 496 LTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVL 555
           L  + + L    P+SL +   ++ + L   +    +   + +   ++ ++L D  L    
Sbjct: 179 LEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDT-- 236

Query: 556 TSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIR 615
                            + +  G    L      +N+ I D  L  ++   L + S L+ 
Sbjct: 237 --------------FHFSELSTGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLE 281

Query: 616 LNLRRNQLSDKIPAEI-GKLSRLQYLD 641
           L   RNQL   +P  I  +L+ LQ + 
Sbjct: 282 LEFSRNQLKS-VPDGIFDRLTSLQKIW 307

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 80.2 bits (198), Expect = 2e-16
 Identities = 55/278 (19%), Positives = 94/278 (33%), Gaps = 20/278 (7%)

Query: 277 GLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELS 336
           GL   ++ L+   N    +  S L     LQ L L S G+N+          +L  L+LS
Sbjct: 49  GLTEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLS 108

Query: 337 INNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYL 396
            N L+         L  ++ L +  N    +    L               L KL+ L +
Sbjct: 109 YNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSL------------FSHLTKLQILRV 156

Query: 397 FDNKFSGPIPQQI-GNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPP 455
            +      I ++    LT L +L++  +      P ++ ++ ++  L L   Q    L  
Sbjct: 157 GNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLE 215

Query: 456 EIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRG----GNLIYLTANVNKLVGPIPESL 511
              +  S      LR+      +FS +L  G             +      L   + + L
Sbjct: 216 IFVDVTSSVECLELRDTDLDTFHFS-ELSTGETNSLIKKFTFRNVKITDESLF-QVMKLL 273

Query: 512 WNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDN 549
              +GL  +   +N+L             LQ I L  N
Sbjct: 274 NQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHTN 311

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens} Length = 353

 Score = 70.9 bits (174), Expect = 2e-13
 Identities = 43/213 (20%), Positives = 78/213 (36%), Gaps = 21/213 (9%)

Query: 84  FSAFPNLTALNLNMNNLVGSIPAGI-GNATKLILLDLSSNNLTNPIPPEI-GYLSDLRVL 141
           F    +LT LNL  N         +  + TKL +L + + +    I  +    L+ L  L
Sbjct: 120 FKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL 179

Query: 142 LLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPS 201
            +  + L    P  L ++QN   L +          +     +S+  L L    L+ F  
Sbjct: 180 EIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFH- 238

Query: 202 FIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHL 261
                    F +LS            L        + +T  S   ++ + +     L  L
Sbjct: 239 ---------FSELS------TGETNSLIKKFTFRNVKITDESLF-QVMKLLNQISGLLEL 282

Query: 262 KLGQNKLTGTIPDEI-GLLSNLEILEFHENLFH 293
           +  +N+L  ++PD I   L++L+ +  H N + 
Sbjct: 283 EFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 314

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 91.6 bits (228), Expect = 1e-20
 Identities = 53/216 (24%), Positives = 84/216 (38%), Gaps = 17/216 (7%)

Query: 87  FPNLTALNLNMNNLVGSIPAGI-GNATKLILLDLSSNNLTNPIPPEI-GYLSDLRVLLLY 144
                 + L+ N +   +PA        L +L L SN L   I       L+ L  L L 
Sbjct: 31  PAASQRIFLHGNRI-SHVPAASFRACRNLTILWLHSNVLAR-IDAAAFTGLALLEQLDLS 88

Query: 145 NNSLTGQIP----HQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFP 200
           +N+    +     H L  L     L +    L++  P  F+G+A+L  L+L  N L+  P
Sbjct: 89  DNAQLRSVDPATFHGLGRLHT---LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALP 145

Query: 201 SFI-AECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREI-KTFPKL 258
                +   L  L L  N I   +P      L +L+ L L +N     +     +   +L
Sbjct: 146 DDTFRDLGNLTHLFLHGNRI-SSVPERAFRGLHSLDRLLLHQNRVA-HVHPHAFRDLGRL 203

Query: 259 RHLKLGQNKLTGTIPDEI-GLLSNLEILEFHENLFH 293
             L L  N L+  +P E    L  L+ L  ++N + 
Sbjct: 204 MTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPWV 238

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 90.4 bits (225), Expect = 3e-20
 Identities = 56/250 (22%), Positives = 89/250 (35%), Gaps = 30/250 (12%)

Query: 117 LDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPD 176
                  L   +P  I   +  + + L+ N ++          +N  +L + +N L   D
Sbjct: 16  TSCPQQGLQA-VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARID 72

Query: 177 PVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEY 236
              F G+A L  L                       DLSDN  +  +       L  L  
Sbjct: 73  AAAFTGLALLEQL-----------------------DLSDNAQLRSVDPATFHGLGRLHT 109

Query: 237 LNLTKNSFEGEIPREI-KTFPKLRHLKLGQNKLTGTIPDEI-GLLSNLEILEFHENLFHG 294
           L+L +   + E+   + +    L++L L  N L   +PD+    L NL  L  H N    
Sbjct: 110 LHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ-ALPDDTFRDLGNLTHLFLHGNRISS 167

Query: 295 LIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQI 354
           +   +   L  L RL L    +    P        L  L L  NNL+     +LA LR +
Sbjct: 168 VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRAL 227

Query: 355 SELGISNNQL 364
             L +++N  
Sbjct: 228 QYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 88.5 bits (220), Expect = 1e-19
 Identities = 55/212 (25%), Positives = 84/212 (39%), Gaps = 7/212 (3%)

Query: 103 SIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNA 162
           ++P GI  A++   + L  N +++          +L +L L++N L        + L   
Sbjct: 25  AVPVGIPAASQR--IFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALL 82

Query: 163 WLLRIGANY-LEDPDPVKFKGMASLTDLWLDYNLLEKFPSFI-AECSKLMFLDLSDNLIM 220
             L +  N  L   DP  F G+  L  L LD   L++    +    + L +L L DN + 
Sbjct: 83  EQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNAL- 141

Query: 221 GHIPIEQLTHLENLEYLNLTKNSFEGEIPREI-KTFPKLRHLKLGQNKLTGTIPDEIGLL 279
             +P +    L NL +L L  N     +P    +    L  L L QN++    P     L
Sbjct: 142 QALPDDTFRDLGNLTHLFLHGNRIS-SVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDL 200

Query: 280 SNLEILEFHENLFHGLIPSSLGNLRRLQRLNL 311
             L  L    N    L   +L  LR LQ L L
Sbjct: 201 GRLMTLYLFANNLSALPTEALAPLRALQYLRL 232

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 83.5 bits (207), Expect = 7e-18
 Identities = 43/170 (25%), Positives = 68/170 (40%), Gaps = 5/170 (2%)

Query: 78  TLDGFDFSAFPNLTALNLNMNNLVGSIPAGI-GNATKLILLDLSSNNLTNPIPPEI-GYL 135
            +D   F+    L  L+L+ N  + S+         +L  L L    L   + P +   L
Sbjct: 70  RIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQE-LGPGLFRGL 128

Query: 136 SDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNL 195
           + L+ L L +N+L         +L N   L +  N +       F+G+ SL  L L  N 
Sbjct: 129 AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNR 188

Query: 196 LEKFPSFI-AECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSF 244
           +         +  +LM L L  N +   +P E L  L  L+YL L  N +
Sbjct: 189 VAHVHPHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLRLNDNPW 237

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 67.7 bits (166), Expect = 1e-12
 Identities = 48/219 (21%), Positives = 83/219 (37%), Gaps = 17/219 (7%)

Query: 428 SIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDF-GPRFLRNVSFSYNNFSGKLPPG 486
           ++P  I   ++  ++ L  N+++  +P       + F   R L  +    N  + ++   
Sbjct: 25  AVPVGI--PAASQRIFLHGNRIS-HVPA------ASFRACRNLTILWLHSNVLA-RIDAA 74

Query: 487 ICRG-GNLIYLTANVNKLVGPIPESLW-NCTGLTRVRLEQNRLDGDITNALGIYPDLQYI 544
              G   L  L  + N  +  +  + +     L  + L++  L             LQY+
Sbjct: 75  AFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYL 134

Query: 545 DLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIP 604
            L DN L  +    +    NL++  + GNRI          L  L  L +  N++   + 
Sbjct: 135 YLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVH 193

Query: 605 AQLFRS-SFLIRLNLRRNQLSDKIPAEI-GKLSRLQYLD 641
              FR    L+ L L  N LS  +P E    L  LQYL 
Sbjct: 194 PHAFRDLGRLMTLYLFANNLS-ALPTEALAPLRALQYLR 231

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A* Length = 285

 Score = 66.6 bits (163), Expect = 3e-12
 Identities = 45/174 (25%), Positives = 67/174 (38%), Gaps = 19/174 (10%)

Query: 296 IPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQIS 355
           +P  +      QR+ L    ++         C NLT L L  N L      +   L  + 
Sbjct: 26  VPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLE 83

Query: 356 ELGISNN-QLSEI-----------ISLQLQMNDLSGKLPPEI-GLLPKLEYLYLFDNKFS 402
           +L +S+N QL  +            +L L    L  +L P +   L  L+YLYL DN   
Sbjct: 84  QLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQ-ELGPGLFRGLAALQYLYLQDNALQ 142

Query: 403 GPIPQQI-GNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPP 455
             +P     +L NL  L L  N  +         L SL +L L  N++   + P
Sbjct: 143 A-LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVA-HVHP 194

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 92.9 bits (230), Expect = 6e-20
 Identities = 53/281 (18%), Positives = 107/281 (38%), Gaps = 18/281 (6%)

Query: 82  FDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVL 141
           F   AF      NL   ++  ++         +  +  +++++ + +   I YL ++  L
Sbjct: 15  FPDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQG-IQYLPNVTKL 70

Query: 142 LLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPS 201
            L  N LT   P  L+NL+N   L +  N ++D      K +  L  L L++N +    +
Sbjct: 71  FLNGNKLTDIKP--LTNLKNLGWLFLDENKIKDLSS--LKDLKKLKSLSLEHNGISDI-N 125

Query: 202 FIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHL 261
            +    +L  L L +N I     I  L+ L  L+ L+L  N    +I   +    KL++L
Sbjct: 126 GLVHLPQLESLYLGNNKITD---ITVLSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNL 180

Query: 262 KLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIP 321
            L +N +  +    +  L NL++LE           +   NL     +       +   P
Sbjct: 181 YLSKNHI--SDLRALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDG--SLVTP 236

Query: 322 KELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNN 362
           + +    +     +  +    +  +S    + ++       
Sbjct: 237 EIISDDGDYEKPNVKWHLPEFTNEVSFIFYQPVTIGKAKAR 277

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 88.2 bits (218), Expect = 2e-18
 Identities = 51/313 (16%), Positives = 101/313 (32%), Gaps = 57/313 (18%)

Query: 138 LRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLE 197
           +   +  +  +    P             +    + D        + S+  +  + + ++
Sbjct: 1   MGETITVSTPIKQIFP--DDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK 56

Query: 198 KFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPK 257
                I     +  L L+ N +     I+ LT+L+NL +L L +N        +IK    
Sbjct: 57  SV-QGIQYLPNVTKLFLNGNKLTD---IKPLTNLKNLGWLFLDEN--------KIKDLSS 104

Query: 258 LRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLN 317
           L+ LK                   L+ L    N    +  + L +L +L+ L L +  + 
Sbjct: 105 LKDLK------------------KLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKIT 144

Query: 318 SSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDL 377
                 L     L  L L  N ++  +   LA L ++  L +S N +S++          
Sbjct: 145 DITV--LSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNLYLSKNHISDL---------- 190

Query: 378 SGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLS 437
                  +  L  L+ L LF  +          NL     ++  +       P  I +  
Sbjct: 191 -----RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV--TPEIISDDG 243

Query: 438 SLVKLSLSSNQLT 450
              K ++  +   
Sbjct: 244 DYEKPNVKWHLPE 256

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 71.7 bits (175), Expect = 3e-13
 Identities = 55/275 (20%), Positives = 86/275 (31%), Gaps = 63/275 (22%)

Query: 327 CANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIG 386
            A      L   ++T ++  +   L  I ++  +N+ +  +                 I 
Sbjct: 20  FAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSV---------------QGIQ 62

Query: 387 LLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIP--STIGNLSSLVKLSL 444
            LP +  L+L  NK +   P  + NL NL  L L  N     I   S++ +L  L  LSL
Sbjct: 63  YLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDEN----KIKDLSSLKDLKKLKSLSL 116

Query: 445 SSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLV 504
             N ++     +I                            G+     L  L    NK+ 
Sbjct: 117 EHNGIS-----DI---------------------------NGLVHLPQLESLYLGNNKIT 144

Query: 505 GPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTN 564
                 L   T L  + LE N++  DI   L     LQ + L  N +S +         N
Sbjct: 145 --DITVLSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSKNHISDL--RALAGLKN 198

Query: 565 LSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQL 599
           L    +              NL     +   D  L
Sbjct: 199 LDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSL 233

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A Length = 605

 Score = 66.3 bits (161), Expect = 2e-11
 Identities = 51/262 (19%), Positives = 86/262 (32%), Gaps = 27/262 (10%)

Query: 364 LSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANN 423
           + E I++   +  +            +     L     +  + Q    L ++  +   N+
Sbjct: 1   MGETITVSTPIKQIFP-----DDAFAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNS 53

Query: 424 FFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKL 483
               S+   I  L ++ KL L+ N+LT   P  + N K+      L  +    N     L
Sbjct: 54  DIK-SV-QGIQYLPNVTKLFLNGNKLTDIKP--LTNLKN------LGWLFLDENKIK-DL 102

Query: 484 PPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQY 543
              +     L  L+   N +       L +   L  + L  N++  DIT  L     L  
Sbjct: 103 SS-LKDLKKLKSLSLEHNGIS--DINGLVHLPQLESLYLGNNKIT-DITV-LSRLTKLDT 157

Query: 544 IDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKI 603
           + L DNQ+S +        T L N  +S N I       L  L  L  L++F  +   K 
Sbjct: 158 LSLEDNQISDI--VPLAGLTKLQNLYLSKNHIS--DLRALAGLKNLDVLELFSQECLNKP 213

Query: 604 PAQLFRSSFLIRLNLRRNQLSD 625
                       +      L  
Sbjct: 214 INHQSNLVVPNTVKNTDGSLVT 235

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 86.8 bits (215), Expect = 1e-18
 Identities = 49/258 (18%), Positives = 85/258 (32%), Gaps = 19/258 (7%)

Query: 89  NLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEI-GYLSDLRVLLLYNNS 147
           +        + +   IP+ +        L      L   I         DL  + +  N 
Sbjct: 10  SNRVFLCQESKVT-EIPSDLPRNAIE--LRFVLTKLRV-IQKGAFSGFGDLEKIEISQND 65

Query: 148 LTGQIP----HQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFI 203
           +   I       L  L    + +  AN L   +P  F+ + +L  L +    ++  P   
Sbjct: 66  VLEVIEADVFSNLPKLHEIRIEK--ANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVH 123

Query: 204 -AECSKLMFLDLSDNLIMGHIPIEQLTHL-ENLEYLNLTKNSFEGEIPREIKTFPKLRHL 261
                + + LD+ DN+ +  I       L      L L KN  + EI        +L  L
Sbjct: 124 KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDEL 182

Query: 262 KLGQNKLTGTIPDEI-GLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSI 320
            L  N     +P+++    S   IL+      H L    L NL++L+  +  +      +
Sbjct: 183 NLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN---LKKL 239

Query: 321 PKELGFCANLTFLELSIN 338
           P  L     L    L+  
Sbjct: 240 P-TLEKLVALMEASLTYP 256

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 77.2 bits (190), Expect = 2e-15
 Identities = 38/246 (15%), Positives = 71/246 (28%), Gaps = 23/246 (9%)

Query: 184 ASLTDLWLDYNLLEKFPSFI-AECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKN 242
            +  +L      L        +    L  +++S N ++  I  +  ++L  L  + + K 
Sbjct: 30  RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89

Query: 243 SFEGEIPREI-KTFPKLRHLKLGQNKLTGTIPDEIGL-LSNLEILEFHENLFHGLIPSSL 300
           +    I  E  +  P L++L +    +   +PD   +      +L+  +N+    I  + 
Sbjct: 90  NNLLYINPEAFQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNS 148

Query: 301 --GNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELG 358
             G       L L   G+                     NNL                L 
Sbjct: 149 FVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILD 208

Query: 359 ISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDL 418
           IS  ++       L    L          L KL     ++ K        +  L  L + 
Sbjct: 209 ISRTRIH-----SLPSYGLEN--------LKKLRARSTYNLKKLPT----LEKLVALMEA 251

Query: 419 QLANNF 424
            L    
Sbjct: 252 SLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 67.2 bits (164), Expect = 4e-12
 Identities = 43/215 (20%), Positives = 71/215 (33%), Gaps = 21/215 (9%)

Query: 259 RHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNS 318
           R     ++K+T  IP    L  N   L F       +   +      L+++ +    +  
Sbjct: 12  RVFLCQESKVT-EIPS--DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLE 68

Query: 319 SIPKE-LGFCANLTFLELS-INNLTGSLPLSLASLRQISELGISNNQLSEI--------- 367
            I  +       L  + +   NNL    P +  +L  +  L ISN  +  +         
Sbjct: 69  VIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL 128

Query: 368 --ISLQLQMNDLSGKLPPEI--GLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQL-AN 422
             + L +Q N     +      GL  +   L+L  N     I     N T L +L L  N
Sbjct: 129 QKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDN 187

Query: 423 NFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEI 457
           N             S  V L +S  ++  +LP   
Sbjct: 188 NNLEELPNDVFHGASGPVILDISRTRIH-SLPSYG 221

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 61.4 bits (149), Expect = 3e-10
 Identities = 39/226 (17%), Positives = 70/226 (30%), Gaps = 27/226 (11%)

Query: 318 SSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQ------ 371
           + IP       N   L   +  L      + +    + ++ IS N + E+I         
Sbjct: 22  TEIPS--DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLP 79

Query: 372 -------LQMNDLSGKLPPEI-GLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANN 423
                   + N+L   + PE    LP L+YL + +            +      L + +N
Sbjct: 80  KLHEIRIEKANNLL-YINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN 138

Query: 424 FFNGSIPSTI--GNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSG 481
               +I      G     V L L+ N +   +          F    L  ++ S NN   
Sbjct: 139 INIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSA------FNGTQLDELNLSDNNNLE 191

Query: 482 KLPPGICRG-GNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNR 526
           +LP  +  G    + L  +  ++       L N   L        +
Sbjct: 192 ELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 237

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 60.6 bits (147), Expect = 5e-10
 Identities = 33/164 (20%), Positives = 55/164 (33%), Gaps = 10/164 (6%)

Query: 84  FSAFPNLTALNLNMNNLVGSIPAGI-GNATKLILLDLSSNNLTNPIPPEI--GYLSDLRV 140
           F   PNL  L ++   +   +P     ++ + +LLD+  N   + I      G   +  +
Sbjct: 100 FQNLPNLQYLLISNTGIK-HLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVI 158

Query: 141 LLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFP 200
           L L  N +        +  Q   L     N LE+     F G +    L +    +   P
Sbjct: 159 LWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP 218

Query: 201 SFI-AECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNS 243
           S+      KL      +        +  L  L  L   +LT  S
Sbjct: 219 SYGLENLKKLRARSTYNL-----KKLPTLEKLVALMEASLTYPS 257

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 59.8 bits (145), Expect = 9e-10
 Identities = 34/243 (13%), Positives = 72/243 (29%), Gaps = 20/243 (8%)

Query: 405 IPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDF 464
           IP  +    N  +L+                   L K+ +S N +   +  ++      F
Sbjct: 24  IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADV------F 75

Query: 465 GP-RFLRNVSFSYNNFSGKLPPGICRG-GNLIYLTANVNKLVGPIPESLWNCTGLTRVRL 522
                L  +     N    + P   +   NL YL  +   +         +      + +
Sbjct: 76  SNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDI 135

Query: 523 EQNRLDGDITNAL--GIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIP 580
           + N     I      G+  +   + L  N +  +  S +             N ++  +P
Sbjct: 136 QDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNSAFNGTQLDELNLSDNNNLEE-LP 194

Query: 581 AE-LGNLTYLQNLDIFDNQLTGKIPAQLFRS-SFLIRLNLRRNQLSDKIPAEIGKLSRLQ 638
            +     +    LDI   ++   +P+    +   L   +    +   K+P  + KL  L 
Sbjct: 195 NDVFHGASGPVILDISRTRIH-SLPSYGLENLKKLRARSTYNLK---KLPT-LEKLVALM 249

Query: 639 YLD 641
              
Sbjct: 250 EAS 252

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C* Length = 350

 Score = 46.0 bits (109), Expect = 2e-05
 Identities = 39/206 (18%), Positives = 73/206 (35%), Gaps = 17/206 (8%)

Query: 442 LSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRG-GNLIYLTANV 500
                +++T  +P ++        PR    + F        +  G   G G+L  +  + 
Sbjct: 14  FLCQESKVT-EIPSDL--------PRNAIELRFVLTKLR-VIQKGAFSGFGDLEKIEISQ 63

Query: 501 NKLVGPIPES-LWNCTGLTRVRLEQ-NRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSN 558
           N ++  I      N   L  +R+E+ N L      A    P+LQY+ + +  +  +   +
Sbjct: 64  NDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVH 123

Query: 559 WGKCTNLSNFRISGNRIKGGIPAE-LGNLTY-LQNLDIFDNQLTGKIPAQLFRSSFLIRL 616
                      I  N     I       L++    L +  N +  +I    F  + L  L
Sbjct: 124 KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFNGTQLDEL 182

Query: 617 NLRRNQLSDKIPAEI-GKLSRLQYLD 641
           NL  N   +++P ++    S    LD
Sbjct: 183 NLSDNNNLEELPNDVFHGASGPVILD 208

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 84.4 bits (209), Expect = 6e-18
 Identities = 62/287 (21%), Positives = 104/287 (36%), Gaps = 22/287 (7%)

Query: 82  FDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVL 141
           F   A  N   +    +N+  ++     +   +  L      +T  I   + YL++L  L
Sbjct: 13  FPDPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTT-IEG-VQYLNNLIGL 68

Query: 142 LLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPS 201
            L +N +T   P  L NL     L +  N L++       G+ S+  L L    +     
Sbjct: 69  ELKDNQITDLAP--LKNLTKITELELSGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTP 124

Query: 202 FIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHL 261
             A  S L  L L  N I     I  L  L NL+YL++         P  +    KL  L
Sbjct: 125 L-AGLSNLQVLYLDLNQITN---ISPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTL 178

Query: 262 KLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIP 321
           K   NK++   P  +  L NL  +    N    +  S L N   L  + L +    +   
Sbjct: 179 KADDNKISDISP--LASLPNLIEVHLKNNQISDV--SPLANTSNLFIVTLTN---QTITN 231

Query: 322 KELGFCANLTFLELSINNLTGSL-PLSLASLRQISELGISNNQLSEI 367
           + + +  NL    +        + P +++     +   ++ N  S I
Sbjct: 232 QPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPNLTWNLTSFI 278

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 83.2 bits (206), Expect = 1e-17
 Identities = 53/264 (20%), Positives = 97/264 (36%), Gaps = 18/264 (6%)

Query: 84  FSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLL 143
            +    +T L+      V +I  G+     LI L+L  N +T+  P  +  L+ +  L L
Sbjct: 37  QADLDGITTLSAF-GTGVTTIE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELEL 92

Query: 144 YNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFI 203
             N L       ++ LQ+   L + +  + D  P    G+++L  L+LD N +      +
Sbjct: 93  SGNPLKNVSA--IAGLQSIKTLDLTSTQITDVTP--LAGLSNLQVLYLDLNQITNISP-L 147

Query: 204 AECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKL 263
           A  + L +L + +  +     +  L +L  L  L    N    +I   + + P L  + L
Sbjct: 148 AGLTNLQYLSIGNAQVSD---LTPLANLSKLTTLKADDNKIS-DIS-PLASLPNLIEVHL 202

Query: 264 GQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKE 323
             N+++   P  +   SNL I+                NL       +K        P  
Sbjct: 203 KNNQISDVSP--LANTSNLFIVTLTNQTITNQPVFYNNNLVVP--NVVKGPSGAPIAPAT 258

Query: 324 LGFCANLTFLELSINNLTGSLPLS 347
           +          L+ N  +    +S
Sbjct: 259 ISDNGTYASPNLTWNLTSFINNVS 282

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 79.3 bits (196), Expect = 2e-16
 Identities = 55/234 (23%), Positives = 94/234 (40%), Gaps = 23/234 (9%)

Query: 225 IEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEI 284
           I     L N   +   K++    +         +  L      +T    + +  L+NL  
Sbjct: 12  IFPDPALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTI--EGVQYLNNLIG 67

Query: 285 LEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSL 344
           LE  +N    L  + L NL ++  L L    L +     +    ++  L+L+   +T   
Sbjct: 68  LELKDNQITDL--APLKNLTKITELELSGNPLKN--VSAIAGLQSIKTLDLTSTQITDVT 123

Query: 345 PLSLASLRQISELGISNNQLSEIISL----QLQMNDLSG----KLPPEIGLLPKLEYLYL 396
           PL+   L  +  L +  NQ++ I  L     LQ   +       L P +  L KL  L  
Sbjct: 124 PLA--GLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKA 180

Query: 397 FDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLT 450
            DNK S   P  + +L NL ++ L NN  +   P  + N S+L  ++L++  +T
Sbjct: 181 DDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT 230

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 70.1 bits (172), Expect = 3e-13
 Identities = 61/273 (22%), Positives = 105/273 (38%), Gaps = 37/273 (13%)

Query: 328 ANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGL 387
           AN   +    +N+T ++  +   L  I+ L      ++ I                 +  
Sbjct: 19  ANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTI---------------EGVQY 61

Query: 388 LPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSN 447
           L  L  L L DN+ +   P  + NLT + +L+L+ N       S I  L S+  L L+S 
Sbjct: 62  LNNLIGLELKDNQITDLAP--LKNLTKITELELSGN--PLKNVSAIAGLQSIKTLDLTST 117

Query: 448 QLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPI 507
           Q+T  + P  G S        L+ +    N  +  + P +    NL YL+    ++    
Sbjct: 118 QIT-DVTPLAGLSN-------LQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSDL- 166

Query: 508 PESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSN 567
              L N + LT ++ + N++  DI+  L   P+L  + L +NQ+S V  S     +NL  
Sbjct: 167 -TPLANLSKLTTLKADDNKIS-DISP-LASLPNLIEVHLKNNQISDV--SPLANTSNLFI 221

Query: 568 FRISGNRIKGGIPAELGNLTYLQNLDIFDNQLT 600
             ++   I         NL     +        
Sbjct: 222 VTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPI 254

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 65.9 bits (161), Expect = 8e-12
 Identities = 46/253 (18%), Positives = 96/253 (37%), Gaps = 24/253 (9%)

Query: 388 LPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSN 447
           L     +    +  +  +     +L  +  L         +I   +  L++L+ L L  N
Sbjct: 18  LANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVT-TIEG-VQYLNNLIGLELKDN 73

Query: 448 QLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPI 507
           Q+T  L P + N         +  +  S N         I    ++  L     ++    
Sbjct: 74  QIT-DLAP-LKNLTK------ITELELSGNPLKN--VSAIAGLQSIKTLDLTSTQITDVT 123

Query: 508 PESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSN 567
           P  L   + L  + L+ N++  +I+  L    +LQY+ +G+ Q+S +  +     + L+ 
Sbjct: 124 P--LAGLSNLQVLYLDLNQIT-NISP-LAGLTNLQYLSIGNAQVSDL--TPLANLSKLTT 177

Query: 568 FRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKI 627
            +   N+I    P  L +L  L  + + +NQ++   P  L  +S L  + L    ++++ 
Sbjct: 178 LKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQP 233

Query: 628 PAEIGKLSRLQYL 640
                 L     +
Sbjct: 234 VFYNNNLVVPNVV 246

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 64.3 bits (157), Expect = 3e-11
 Identities = 57/317 (17%), Positives = 109/317 (34%), Gaps = 46/317 (14%)

Query: 279 LSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSIN 338
           L+N   +   ++     +     +L  +  L+    G+ +   + + +  NL  LEL  N
Sbjct: 18  LANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDN 73

Query: 339 NLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFD 398
            +T   PL   +L +I+EL +S N L  +                 I  L  ++ L L  
Sbjct: 74  QITDLAPLK--NLTKITELELSGNPLKNV---------------SAIAGLQSIKTLDLTS 116

Query: 399 NKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIG 458
            + +   P  +  L+NL  L L  N    +  S +  L++L  LS+ + Q++      + 
Sbjct: 117 TQITDVTP--LAGLSNLQVLYLDLN--QITNISPLAGLTNLQYLSIGNAQVSDL--TPLA 170

Query: 459 NSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLT 518
           N         L  +    N  S      +    NLI +    N++       L N + L 
Sbjct: 171 NLSK------LTTLKADDNKISD--ISPLASLPNLIEVHLKNNQISD--VSPLANTSNLF 220

Query: 519 RVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLT-SNWGKCTNLSNFRISGNRIKG 577
            V L    +                +           T S+ G   + +        +  
Sbjct: 221 IVTLTNQTITNQPVFYNNNLVVPNVVKGPSGAPIAPATISDNGTYASPN--------LTW 272

Query: 578 GIPAELGNLTYLQNLDI 594
            + + + N++Y  N  +
Sbjct: 273 NLTSFINNVSYTFNQSV 289

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 Length = 308

 Score = 62.0 bits (151), Expect = 1e-10
 Identities = 49/231 (21%), Positives = 86/231 (37%), Gaps = 24/231 (10%)

Query: 411 NLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLR 470
            L N   +    +  N +   T  +L  +  LS     +T      +    +      L 
Sbjct: 17  ALANAIKIAAGKS--NVTDTVTQADLDGITTLSAFGTGVTTI--EGVQYLNN------LI 66

Query: 471 NVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGD 530
            +    N  +  L P +     +  L  + N L      ++     +  + L   ++  D
Sbjct: 67  GLELKDNQIT-DLAP-LKNLTKITELELSGNPLK--NVSAIAGLQSIKTLDLTSTQI-TD 121

Query: 531 ITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQ 590
           +T  L    +LQ + L  NQ++ +  S     TNL    I   ++    P  L NL+ L 
Sbjct: 122 VTP-LAGLSNLQVLYLDLNQITNI--SPLAGLTNLQYLSIGNAQVSDLTP--LANLSKLT 176

Query: 591 NLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIPAEIGKLSRLQYLD 641
            L   DN+++  I   L     LI ++L+ NQ+SD  P  +   S L  + 
Sbjct: 177 TLKADDNKIS-DISP-LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVT 223

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 81.2 bits (201), Expect = 2e-17
 Identities = 44/231 (19%), Positives = 75/231 (32%), Gaps = 32/231 (13%)

Query: 88  PNLTALNLNMNNLVGSIPAGI-GNATKLILLDLSSNNLTNPIPPEI-GYLSDLRVLLLYN 145
           P+   L L   +L  +IP+    N   +  + +S +     +       LS +  + + N
Sbjct: 31  PSTQTLKLIETHLR-TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRN 89

Query: 146 NSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFP--SFI 203
                 I                            K +  L  L +    L+ FP  + +
Sbjct: 90  TRNLTYIDPDA-----------------------LKELPLLKFLGIFNTGLKMFPDLTKV 126

Query: 204 AECSKLMFLDLSDNLIMGHIPIEQLTHLEN-LEYLNLTKNSFEGEIPREIKTFPKLRHLK 262
                   L+++DN  M  IP+     L N    L L  N F   +        KL  + 
Sbjct: 127 YSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVY 185

Query: 263 LGQNKLTGTIPDEI--GLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNL 311
           L +NK    I  +   G+ S   +L+  +     L    L +L+ L   N 
Sbjct: 186 LNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 65.4 bits (160), Expect = 4e-12
 Identities = 38/200 (19%), Positives = 66/200 (33%), Gaps = 22/200 (11%)

Query: 277 GLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFC--ANLTFLE 334
            L  + + L+  E     +   +  NL  + R+ +        +     F   + +T +E
Sbjct: 28  SLPPSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHS-FYNLSKVTHIE 86

Query: 335 LSINNLTGSLPLS-LASLRQISELGISNNQLSEI------------ISLQLQMNDLSGKL 381
           +        +    L  L  +  LGI N  L                 L++  N     +
Sbjct: 87  IRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPYMTSI 146

Query: 382 PPEI--GLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTI--GNLS 437
           P     GL  +   L L++N F+  +     N T L  + L  N +   I      G  S
Sbjct: 147 PVNAFQGLCNETLTLKLYNNGFTS-VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYS 205

Query: 438 SLVKLSLSSNQLTGTLPPEI 457
               L +S   +T  LP + 
Sbjct: 206 GPSLLDVSQTSVT-ALPSKG 224

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 64.3 bits (157), Expect = 1e-11
 Identities = 32/194 (16%), Positives = 64/194 (32%), Gaps = 14/194 (7%)

Query: 184 ASLTDLWLDYNLLEKFPSFI-AECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKN 242
            S   L L    L   PS   +    +  + +S ++ +  +      +L  + ++ +   
Sbjct: 31  PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNT 90

Query: 243 SFEGEIPREIKTF---PKLRHLKLGQNKLTGTIPDE--IGLLSNLEILEFHENLFHGLIP 297
                I  +       P L+ L +    L    PD   +       ILE  +N +   IP
Sbjct: 91  RNLTYIDPD--ALKELPLLKFLGIFNTGLK-MFPDLTKVYSTDIFFILEITDNPYMTSIP 147

Query: 298 SSL--GNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLP-LSLASLRQ- 353
            +   G       L L + G  +S+         L  + L+ N     +   +   +   
Sbjct: 148 VNAFQGLCNETLTLKLYNNGF-TSVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSG 206

Query: 354 ISELGISNNQLSEI 367
            S L +S   ++ +
Sbjct: 207 PSLLDVSQTSVTAL 220

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 50.0 bits (120), Expect = 5e-07
 Identities = 35/297 (11%), Positives = 79/297 (26%), Gaps = 75/297 (25%)

Query: 327 CANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIG 386
           C       ++  ++   +P    S +    L +    L  I       +  S        
Sbjct: 10  CHQEEDFRVTCKDIQ-RIPSLPPSTQ---TLKLIETHLRTI-----PSHAFSN------- 53

Query: 387 LLPKLEYLYLFDNKFSGPIPQQI-GNLTNLFDLQLANNFFNGSIPS-TIGNLSSLVKLSL 444
            LP +  +Y+  +     +      NL+ +  +++ N      I    +  L  L  L +
Sbjct: 54  -LPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFLGI 112

Query: 445 SSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLV 504
            +  L         +    +       +  + N +   +P    +G              
Sbjct: 113 FNTGLK-----MFPDLTKVYSTDIFFILEITDNPYMTSIPVNAFQG-------------- 153

Query: 505 GPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTN 564
                                           +  +   + L +N  +  +       T 
Sbjct: 154 --------------------------------LCNETLTLKLYNNGFT-SVQGYAFNGTK 180

Query: 565 LSNFRISGNRIKGGIPAEL--GNLTYLQNLDIFDNQLTGKIPAQLFRS-SFLIRLNL 618
           L    ++ N+    I  +   G  +    LD+    +T  +P++       LI  N 
Sbjct: 181 LDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSKGLEHLKELIARNT 236

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C* Length = 239

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 33/213 (15%), Positives = 65/213 (30%), Gaps = 19/213 (8%)

Query: 436 LSSLVKLSLSSNQLTGTLPPEIGNSKSDF-GPRFLRNVSFSYNNFSGKLPPGICRG-GNL 493
             S   L L    L  T+P         F     +  +  S +    +L          +
Sbjct: 30  PPSTQTLKLIETHLR-TIPS------HAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKV 82

Query: 494 IYLT-ANVNKLVGPIPESLWNCTGLTRVRLEQNRLDG-DITNALGIYPDLQYIDLGDNQL 551
            ++   N   L    P++L     L  + +    L        +        +++ DN  
Sbjct: 83  THIEIRNTRNLTYIDPDALKELPLLKFLGIFNTGLKMFPDLTKVYSTDIFFILEITDNPY 142

Query: 552 SGVLTSN--WGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFR 609
              +  N   G C      ++  N     +     N T L  + +  N+    I    F 
Sbjct: 143 MTSIPVNAFQGLCNETLTLKLYNNGFTS-VQGYAFNGTKLDAVYLNKNKYLTVIDKDAFG 201

Query: 610 --SSFLIRLNLRRNQLSDKIPAEIGKLSRLQYL 640
              S    L++ +  ++  +P++   L  L+ L
Sbjct: 202 GVYSGPSLLDVSQTSVT-ALPSKG--LEHLKEL 231

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 79.2 bits (196), Expect = 3e-17
 Identities = 35/159 (22%), Positives = 60/159 (37%), Gaps = 7/159 (4%)

Query: 84  FSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLL 143
            +   +LT + L  N  V  +  GI  A  +  L +++ + TN  P  I  LS+L  L +
Sbjct: 40  EAQMNSLTYITLA-NINVTDLT-GIEYAHNIKDLTINNIHATNYNP--ISGLSNLERLRI 95

Query: 144 YNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFI 203
               +T      LS L +  LL I  +  +D    K   +  +  + L YN        +
Sbjct: 96  MGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMPL 155

Query: 204 AECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKN 242
               +L  L++  + +  +  IE       L  L     
Sbjct: 156 KTLPELKSLNIQFDGVHDYRGIEDFP---KLNQLYAFSQ 191

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 76.2 bits (188), Expect = 4e-16
 Identities = 37/189 (19%), Positives = 67/189 (35%), Gaps = 22/189 (11%)

Query: 217 NLIMGHIPIEQLT--HLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPD 274
           N ++G      +T   + +L Y+ L   +        I+    ++ L +     T   P 
Sbjct: 27  NGLLGQSSTANITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIHATNYNP- 83

Query: 275 EIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLE 334
            I  LSNLE L             +L  L  L  L++  +  + SI  ++     +  ++
Sbjct: 84  -ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSID 142

Query: 335 LSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYL 394
           LS N     +   L +L ++  L I  + + +   ++                 PKL  L
Sbjct: 143 LSYNGAITDIM-PLKTLPELKSLNIQFDGVHDYRGIE---------------DFPKLNQL 186

Query: 395 YLFDNKFSG 403
           Y F     G
Sbjct: 187 YAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 71.9 bits (177), Expect = 1e-14
 Identities = 30/186 (16%), Positives = 61/186 (32%), Gaps = 10/186 (5%)

Query: 157 SNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSD 216
           S  +      +G +   +   +    M SLT + L    +    + I     +  L +++
Sbjct: 20  STFKAYLNGLLGQSSTAN---ITEAQMNSLTYITLANINVTDL-TGIEYAHNIKDLTINN 75

Query: 217 NLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEI 276
                      ++ L NLE L +       +    +     L  L +  +    +I  +I
Sbjct: 76  IHATN---YNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKI 132

Query: 277 GLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELS 336
             L  +  ++   N     I   L  L  L+ LN++  G++      +     L  L   
Sbjct: 133 NTLPKVNSIDLSYNGAITDI-MPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAF 189

Query: 337 INNLTG 342
              + G
Sbjct: 190 SQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 68.8 bits (169), Expect = 1e-13
 Identities = 41/184 (22%), Positives = 68/184 (36%), Gaps = 9/184 (4%)

Query: 88  PNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNS 147
               A    +     +          L  + L++ N+T+     I Y  +++ L + N  
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTG--IEYAHNIKDLTINNIH 77

Query: 148 LTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLE-KFPSFIAEC 206
            T   P  +S L N   LRI    +         G+ SLT L + ++  +    + I   
Sbjct: 78  ATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAHDDSILTKINTL 135

Query: 207 SKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQN 266
            K+  +DLS N  +    I  L  L  L+ LN+  +         I+ FPKL  L     
Sbjct: 136 PKVNSIDLSYNGAITD--IMPLKTLPELKSLNIQFDGVHDYRG--IEDFPKLNQLYAFSQ 191

Query: 267 KLTG 270
            + G
Sbjct: 192 TIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 63.8 bits (156), Expect = 7e-12
 Identities = 26/154 (16%), Positives = 54/154 (35%), Gaps = 20/154 (12%)

Query: 302 NLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISN 361
             +      L  +   +    ++    +LT++ L+  N+T    +       I +L I+N
Sbjct: 21  TFKAYLNGLLGQSSTANITEAQM---NSLTYITLANINVTDLTGIE--YAHNIKDLTINN 75

Query: 362 NQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLA 421
              +    +                 L  LE L +     +      +  LT+L  L ++
Sbjct: 76  IHATNYNPI---------------SGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120

Query: 422 NNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPP 455
           ++  + SI + I  L  +  + LS N     + P
Sbjct: 121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP 154

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 63.1 bits (154), Expect = 1e-11
 Identities = 22/200 (11%), Positives = 67/200 (33%), Gaps = 26/200 (13%)

Query: 328 ANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGL 387
           +        +   + +  ++ A +  ++ + ++N  ++++  ++                
Sbjct: 20  STFKAYLNGLLGQSSTANITEAQMNSLTYITLANINVTDLTGIE---------------Y 64

Query: 388 LPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSN 447
              ++ L + +   +   P  I  L+NL  L++            +  L+SL  L +S +
Sbjct: 65  AHNIKDLTINNIHATNYNP--ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122

Query: 448 QLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPI 507
               ++  +I           + ++  SYN     + P +     L  L    + +    
Sbjct: 123 AHDDSILTKINTLPK------VNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYR 175

Query: 508 PESLWNCTGLTRVRLEQNRL 527
              + +   L ++      +
Sbjct: 176 G--IEDFPKLNQLYAFSQTI 193

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 56.5 bits (137), Expect = 2e-09
 Identities = 19/133 (14%), Positives = 45/133 (33%), Gaps = 5/133 (3%)

Query: 509 ESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNF 568
             +     +  + +       +    +    +L+ + +    ++     N    T+L+  
Sbjct: 60  TGIEYAHNIKDLTINNIHA-TNYNP-ISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLL 117

Query: 569 RISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIP 628
            IS +     I  ++  L  + ++D+  N     I   L     L  LN++ + + D   
Sbjct: 118 DISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRG 176

Query: 629 AEIGKLSRLQYLD 641
             I    +L  L 
Sbjct: 177 --IEDFPKLNQLY 187

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 51.9 bits (125), Expect = 8e-08
 Identities = 28/196 (14%), Positives = 62/196 (31%), Gaps = 26/196 (13%)

Query: 411 NLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLR 470
                 +  L  +    +   T   ++SL  ++L++  +T      I  + +      ++
Sbjct: 21  TFKAYLNGLLGQS---STANITEAQMNSLTYITLANINVTDLTG--IEYAHN------IK 69

Query: 471 NVSFSYNNFS-----GKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQN 525
           +++ +  + +       L        NL  L      +      +L   T LT + +  +
Sbjct: 70  DLTINNIHATNYNPISGLS-------NLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHS 122

Query: 526 RLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGN 585
             D  I   +   P +  IDL  N     +         L +  I  + +       + +
Sbjct: 123 AHDDSILTKINTLPKVNSIDLSYNGAITDIMPL-KTLPELKSLNIQFDGVHDYRG--IED 179

Query: 586 LTYLQNLDIFDNQLTG 601
              L  L  F   + G
Sbjct: 180 FPKLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 49.2 bits (118), Expect = 8e-07
 Identities = 21/134 (15%), Positives = 44/134 (32%), Gaps = 5/134 (3%)

Query: 492 NLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQL 551
           N+  LT N           +   + L R+R+    +  D    L     L  +D+  +  
Sbjct: 67  NIKDLTINNIHATNY--NPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDISHSAH 124

Query: 552 SGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSS 611
              + +       +++  +S N     I   L  L  L++L+I  + +       +    
Sbjct: 125 DDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLNIQFDGVHDYRG--IEDFP 181

Query: 612 FLIRLNLRRNQLSD 625
            L +L      +  
Sbjct: 182 KLNQLYAFSQTIGG 195

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes} Length = 197

 Score = 44.6 bits (106), Expect = 3e-05
 Identities = 18/83 (21%), Positives = 33/83 (39%), Gaps = 2/83 (2%)

Query: 83  DFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLL 142
           + S   +LT L+++ +    SI   I    K+  +DLS N     I P +  L +L+ L 
Sbjct: 107 NLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAITDIMP-LKTLPELKSLN 165

Query: 143 LYNNSLTGQIP-HQLSNLQNAWL 164
           +  + +           L   + 
Sbjct: 166 IQFDGVHDYRGIEDFPKLNQLYA 188

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 79.4 bits (196), Expect = 2e-16
 Identities = 57/209 (27%), Positives = 84/209 (40%), Gaps = 24/209 (11%)

Query: 256 PKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAG 315
                +   +  LT  +P    L  +  IL   ENL +    ++L    RL +LNL  A 
Sbjct: 10  ASHLEVNCDKRNLT-ALPP--DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAE 66

Query: 316 LNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMN 375
           L + +  +      L  L+LS N L  SLPL   +L  ++ L +S N+L+          
Sbjct: 67  L-TKLQVDGTL-PVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLT---------- 113

Query: 376 DLSGKLPPEI-GLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTI- 433
                LP      L +L+ LYL  N+     P  +     L  L LANN     +P+ + 
Sbjct: 114 ----SLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLT-ELPAGLL 168

Query: 434 GNLSSLVKLSLSSNQLTGTLPPEIGNSKS 462
             L +L  L L  N L  T+P     S  
Sbjct: 169 NGLENLDTLLLQENSLY-TIPKGFFGSHL 196

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 77.5 bits (191), Expect = 7e-16
 Identities = 51/204 (25%), Positives = 74/204 (36%), Gaps = 11/204 (5%)

Query: 110 NATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGA 169
                + ++    NLT  +PP++    D  +L L  N L       L        L +  
Sbjct: 8   KVASHLEVNCDKRNLTA-LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDR 64

Query: 170 NYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLT 229
             L          +  L  L L +N L+  P        L  LD+S N +   +P+  L 
Sbjct: 65  AELTKLQV--DGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLT-SLPLGALR 121

Query: 230 HLENLEYLNLTKNSFEGEIPREI-KTFPKLRHLKLGQNKLTGTIPDEI-GLLSNLEILEF 287
            L  L+ L L  N  +  +P  +    PKL  L L  N LT  +P  +   L NL+ L  
Sbjct: 122 GLGELQELYLKGNELK-TLPPGLLTPTPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLL 179

Query: 288 HENLFHGLIPSSLGNLRRLQRLNL 311
            EN  +  IP        L    L
Sbjct: 180 QENSLYT-IPKGFFGSHLLPFAFL 202

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 74.0 bits (182), Expect = 1e-14
 Identities = 51/181 (28%), Positives = 74/181 (40%), Gaps = 6/181 (3%)

Query: 87  FPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNN 146
             + T L+L+ N L     A +   T+L  L+L    LT       G L  L  L L +N
Sbjct: 30  PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK--LQVDGTLPVLGTLDLSHN 87

Query: 147 SLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFI-AE 205
            L   +P     L    +L +  N L        +G+  L +L+L  N L+  P  +   
Sbjct: 88  QLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTP 146

Query: 206 CSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQ 265
             KL  L L++N +   +P   L  LENL+ L L +NS    IP+       L    L  
Sbjct: 147 TPKLEKLSLANNNLT-ELPAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHG 204

Query: 266 N 266
           N
Sbjct: 205 N 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 70.1 bits (172), Expect = 2e-13
 Identities = 55/223 (24%), Positives = 85/223 (38%), Gaps = 32/223 (14%)

Query: 306 LQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLS 365
              +N     L +++P       + T L LS N L      +L    ++++L +   +L+
Sbjct: 12  HLEVNCDKRNL-TALPP--DLPKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT 68

Query: 366 EIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFF 425
           ++                  G LP L  L L  N+    +P     L  L  L ++ N  
Sbjct: 69  KL---------------QVDGTLPVLGTLDLSHNQLQS-LPLLGQTLPALTVLDVSFNRL 112

Query: 426 NGSIPSTI-GNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGP-RFLRNVSFSYNNFSGKL 483
             S+P      L  L +L L  N+L  TLPP +        P   L  +S + NN + +L
Sbjct: 113 T-SLPLGALRGLGELQELYLKGNELK-TLPPGL------LTPTPKLEKLSLANNNLT-EL 163

Query: 484 PPGICRG-GNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQN 525
           P G+  G  NL  L    N L   IP+  +    L    L  N
Sbjct: 164 PAGLLNGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAFLHGN 205

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 66.7 bits (163), Expect = 3e-12
 Identities = 45/214 (21%), Positives = 75/214 (35%), Gaps = 27/214 (12%)

Query: 435 NLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRG-GNL 493
            ++S ++++     LT  LPP++        P+    +  S N                L
Sbjct: 8   KVASHLEVNCDKRNLT-ALPPDL--------PKDTTILHLSENLLY-TFSLATLMPYTRL 57

Query: 494 IYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLS- 552
             L  +  +L     +       L  + L  N+L   +       P L  +D+  N+L+ 
Sbjct: 58  TQLNLDRAELT--KLQVDGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS 114

Query: 553 ---GVLTSNWGKCTNLSNFRISGNRIKGGIPAEL-GNLTYLQNLDIFDNQLTGKIPAQLF 608
              G L         L    + GN +K  +P  L      L+ L + +N LT ++PA L 
Sbjct: 115 LPLGALR----GLGELQELYLKGNELKT-LPPGLLTPTPKLEKLSLANNNLT-ELPAGLL 168

Query: 609 RS-SFLIRLNLRRNQLSDKIPAEIGKLSRLQYLD 641
                L  L L+ N L   IP        L +  
Sbjct: 169 NGLENLDTLLLQENSLYT-IPKGFFGSHLLPFAF 201

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A Length = 290

 Score = 64.4 bits (157), Expect = 2e-11
 Identities = 38/139 (27%), Positives = 52/139 (37%), Gaps = 11/139 (7%)

Query: 84  FSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEI-GYLSDLRVLL 142
               P L  L+L+ N L  S+P        L +LD+S N LT+ +P      L +L+ L 
Sbjct: 73  DGTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTS-LPLGALRGLGELQELY 130

Query: 143 LYNNSLTGQIPH----QLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEK 198
           L  N L   +P         L+   L     N L +       G+ +L  L L  N L  
Sbjct: 131 LKGNELK-TLPPGLLTPTPKLEKLSL---ANNNLTELPAGLLNGLENLDTLLLQENSLYT 186

Query: 199 FPSFIAECSKLMFLDLSDN 217
            P        L F  L  N
Sbjct: 187 IPKGFFGSHLLPFAFLHGN 205

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 78.9 bits (195), Expect = 2e-16
 Identities = 50/221 (22%), Positives = 88/221 (39%), Gaps = 40/221 (18%)

Query: 83  DFSAFPNLTALNLNMNNLVGSIPAGI-GNATKLILLDLSSNNLTNPIPPEI-GYLSDLRV 140
            F +FP L  L+L+   +  +I  G   + + L  L L+ N + + +       LS L+ 
Sbjct: 47  SFFSFPELQVLDLSRCEI-QTIEDGAYQSLSHLSTLILTGNPIQS-LALGAFSGLSSLQK 104

Query: 141 LLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFP 200
           L+             L++L+                      + +L +L + +NL++ F 
Sbjct: 105 LVAVET--------NLASLE----------------NFPIGHLKTLKELNVAHNLIQSFK 140

Query: 201 S---FIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEY----LNLTKNSFEGEIPREIK 253
               F +  + L  LDLS N I   I    L  L  +      L+L+ N     I     
Sbjct: 141 LPEYF-SNLTNLEHLDLSSNKI-QSIYCTDLRVLHQMPLLNLSLDLSLNPMN-FIQPGAF 197

Query: 254 TFPKLRHLKLGQNKLTGTIPDEI-GLLSNLEILEFHENLFH 293
              +L+ L L  N+L  ++PD I   L++L+ +  H N + 
Sbjct: 198 KEIRLKELALDTNQLK-SVPDGIFDRLTSLQKIWLHTNPWD 237

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 73.1 bits (180), Expect = 2e-14
 Identities = 58/300 (19%), Positives = 98/300 (32%), Gaps = 89/300 (29%)

Query: 103 SIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNA 162
            IP  +  +TK   LDLS N L +          +L+VL L           ++  +++ 
Sbjct: 21  KIPDNLPFSTKN--LDLSFNPLRHLGSYSFFSFPELQVLDLSRC--------EIQTIED- 69

Query: 163 WLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFI-AECSKLMFLDLSDNLIMG 221
                GA          ++ ++ L+ L L  N ++       +  S L  L   +     
Sbjct: 70  -----GA----------YQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVET---- 110

Query: 222 HIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEI-GLLS 280
                 L  LEN    +L                  L+ L +  N +      E    L+
Sbjct: 111 -----NLASLENFPIGHLK----------------TLKELNVAHNLIQSFKLPEYFSNLT 149

Query: 281 NLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNL 340
           NLE L+   N    +  + L  L ++  LNL                     L+LS+N +
Sbjct: 150 NLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS--------------------LDLSLNPM 189

Query: 341 TGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEI-GLLPKLEYLYLFDN 399
              +        ++ EL +  NQL  +              P  I   L  L+ ++L  N
Sbjct: 190 N-FIQPGAFKEIRLKELALDTNQLKSV--------------PDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 68.8 bits (169), Expect = 5e-13
 Identities = 48/222 (21%), Positives = 78/222 (35%), Gaps = 21/222 (9%)

Query: 318 SSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEI---------- 367
             IP       +   L+LS N L      S  S  ++  L +S  ++  I          
Sbjct: 20  YKIPD--NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSH 77

Query: 368 -ISLQLQMNDLSGKLPPEI-GLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFF 425
             +L L  N +   L       L  L+ L   +   +      IG+L  L +L +A+N  
Sbjct: 78  LSTLILTGNPIQ-SLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLI 136

Query: 426 NGSIPS--TIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKL 483
             S        NL++L  L LSSN++  ++               L  +  S N  +  +
Sbjct: 137 Q-SFKLPEYFSNLTNLEHLDLSSNKIQ-SIYCTDLRVLHQMPLLNLS-LDLSLNPMN-FI 192

Query: 484 PPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQN 525
            PG  +   L  L  + N+L           T L ++ L  N
Sbjct: 193 QPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 234

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 67.7 bits (166), Expect = 1e-12
 Identities = 45/226 (19%), Positives = 77/226 (34%), Gaps = 28/226 (12%)

Query: 428 SIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDF-GPRFLRNVSFSYNNFSGKLPPG 486
            IP  +    S   L LS N L   L          F     L+ +  S       +  G
Sbjct: 21  KIPDNL--PFSTKNLDLSFNPLR-HLGS------YSFFSFPELQVLDLSRCEIQ-TIEDG 70

Query: 487 ICRG-GNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYID 545
             +   +L  L    N +      +    + L ++   +  L       +G    L+ ++
Sbjct: 71  AYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELN 130

Query: 546 LGDNQLS-----GVLTSNWGKCTNLSNFRISGNRIK---GGIPAELGNLTYLQ-NLDIFD 596
           +  N +         +      TNL +  +S N+I+         L  +  L  +LD+  
Sbjct: 131 VAHNLIQSFKLPEYFS----NLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 186

Query: 597 NQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIPAEI-GKLSRLQYLD 641
           N +   I    F+   L  L L  NQL   +P  I  +L+ LQ + 
Sbjct: 187 NPMN-FIQPGAFKEIRLKELALDTNQLKS-VPDGIFDRLTSLQKIW 230

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A* Length = 276

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 30/123 (24%), Positives = 43/123 (34%), Gaps = 8/123 (6%)

Query: 78  TLDGFDFSAFPNLTALNLNMNNLVGSIPAGI-GNATKLILLDLSSNNLTNPIPPEI-GYL 135
           +L+ F       L  LN+  N +          N T L  LDLSSN + + I       L
Sbjct: 114 SLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVL 172

Query: 136 SDLRV----LLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWL 191
             + +    L L  N +   I            L +  N L+      F  + SL  +WL
Sbjct: 173 HQMPLLNLSLDLSLNPMN-FIQPGAFKEIRLKELALDTNQLKSVPDGIFDRLTSLQKIWL 231

Query: 192 DYN 194
             N
Sbjct: 232 HTN 234

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 78.4 bits (193), Expect = 6e-16
 Identities = 47/219 (21%), Positives = 72/219 (32%), Gaps = 23/219 (10%)

Query: 207 SKLMFLDLSDNLIMGHIPIEQL-THLENLEYLNLTKNSFEGEIPREIKTF----PKLRHL 261
           S L  L L +  + G  P   L     +L  LNL   S+        +      P L+ L
Sbjct: 95  SGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVL 154

Query: 262 KLGQNKLTGTIPDEIGLLSNLEILEFHEN-------LFHGLIPSSLGNLRRLQRLNLKSA 314
            + Q        +++ +   L  L+  +N       L   L P     L+ L   N    
Sbjct: 155 SIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGME 214

Query: 315 GLNSSIPKELGFCANLTFLELSINNLTGSLP-LSLASLRQISELGISNNQLSEI------ 367
             +            L  L+LS N+L  +    S     Q++ L +S   L ++      
Sbjct: 215 TPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLPA 274

Query: 368 --ISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGP 404
               L L  N L     P    LP++  L L  N F   
Sbjct: 275 KLSVLDLSYNRLDRN--PSPDELPQVGNLSLKGNPFLDS 311

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 74.2 bits (182), Expect = 1e-14
 Identities = 59/287 (20%), Positives = 86/287 (29%), Gaps = 57/287 (19%)

Query: 89  NLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIG--YLSDLRVLLLYNN 146
            LT     + + +      +   + L  L L +  +T   PP +      DL +L L N 
Sbjct: 72  RLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNV 131

Query: 147 SLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFP-SFIAE 205
           S   +    L+ LQ                         L  L +       F    +  
Sbjct: 132 SWATRDAW-LAELQQWLKP-------------------GLKVLSIAQAHSLNFSCEQVRV 171

Query: 206 CSKLMFLDLSDNLIMGHIPIE------QLTHLENLEYLNLTKNSFEGEIPREIKTFPKLR 259
              L  LDLSDN  +G   +       +   L+ L   N    +  G          +L+
Sbjct: 172 FPALSTLDLSDNPELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQ 231

Query: 260 HLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSS 319
            L L  N L                              S     +L  LNL   GL   
Sbjct: 232 GLDLSHNSLRDAAG-----------------------APSCDWPSQLNSLNLSFTGL-KQ 267

Query: 320 IPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSE 366
           +PK L   A L+ L+LS N L    P     L Q+  L +  N   +
Sbjct: 268 VPKGLP--AKLSVLDLSYNRLD-RNPSPD-ELPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 69.2 bits (169), Expect = 5e-13
 Identities = 43/227 (18%), Positives = 67/227 (29%), Gaps = 19/227 (8%)

Query: 82  FDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEI------GYL 135
                   L  L L    + G+ P  +  AT   L  L+  N++                
Sbjct: 89  LRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLK 148

Query: 136 SDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVK----FKGMASLTDLWL 191
             L+VL +           Q+        L +  N       +          +L  L L
Sbjct: 149 PGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTLQVLAL 208

Query: 192 DYNLLEKFP----SFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGE 247
               +E       +  A   +L  LDLS N +              L  LNL+    + +
Sbjct: 209 RNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-Q 267

Query: 248 IPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHG 294
           +P+ +    KL  L L  N+L    P     L  +  L    N F  
Sbjct: 268 VPKGL--PAKLSVLDLSYNRLD-RNPSPDE-LPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 64.9 bits (158), Expect = 2e-11
 Identities = 43/278 (15%), Positives = 72/278 (25%), Gaps = 44/278 (15%)

Query: 329 NLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLL 388
            LT     I +      L +  +  + EL + N +++                P      
Sbjct: 72  RLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAP-----------PPLLEATG 120

Query: 389 PKLEYLYLFDNKFSGPIPQ----QIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSL 444
           P L  L L +  ++         Q      L  L +A           +    +L  L L
Sbjct: 121 PDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDL 180

Query: 445 SSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLV 504
           S N   G     + ++        L+ ++                               
Sbjct: 181 SDNPELGERG--LISALCPLKFPTLQVLALRNAGM---------------------ETPS 217

Query: 505 GPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPD-LQYIDLGDNQLSGVLTSNWGKCT 563
           G           L  + L  N L          +P  L  ++L    L  V         
Sbjct: 218 GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLKQVPKGLP---A 274

Query: 564 NLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTG 601
            LS   +S NR+    P+    L  + NL +  N    
Sbjct: 275 KLSVLDLSYNRLD-RNPSPDE-LPQVGNLSLKGNPFLD 310

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus} Length = 312

 Score = 63.8 bits (155), Expect = 3e-11
 Identities = 45/302 (14%), Positives = 94/302 (31%), Gaps = 32/302 (10%)

Query: 347 SLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIP 406
           S  +    +++ +     S    L+    +       +I     L+ L +   +    I 
Sbjct: 26  SAFNCLGAADVELYGGGRSLEYLLKRVDTEADLGQFTDIIKSLSLKRLTVRAARIPSRIL 85

Query: 407 QQ---IGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSD 463
                +  ++ L +L L N    G+ P  +   +      L+   ++             
Sbjct: 86  FGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNILNLRNVSWATRDAWLAELQQ 145

Query: 464 FGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLE 523
           +    L+ +S +  +        +     L  L  + N  +G        C         
Sbjct: 146 WLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC--------- 196

Query: 524 QNRLDGDITNALGIYPDLQYIDLGDNQ---LSGVLTSNWGKCTNLSNFRISGNRIKGGIP 580
                         +P LQ + L +      SGV ++       L    +S N ++    
Sbjct: 197 -----------PLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAG 245

Query: 581 AEL-GNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIPAEIGKLSRLQY 639
           A      + L +L++    L  ++P  L     L  L+L  N+L    P+   +L ++  
Sbjct: 246 APSCDWPSQLNSLNLSFTGLK-QVPKGLPAK--LSVLDLSYNRLDR-NPS-PDELPQVGN 300

Query: 640 LD 641
           L 
Sbjct: 301 LS 302

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 76.6 bits (189), Expect = 2e-15
 Identities = 53/260 (20%), Positives = 102/260 (39%), Gaps = 18/260 (6%)

Query: 82  FDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVL 141
           F   AF      NL   ++  ++         +  +  +++++ + +   I YL ++  L
Sbjct: 18  FSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQG-IQYLPNVTKL 73

Query: 142 LLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPS 201
            L  N LT   P  L+NL+N   L +  N ++D      K +  L  L L++N +    +
Sbjct: 74  FLNGNKLTDIKP--LANLKNLGWLFLDENKVKDLSS--LKDLKKLKSLSLEHNGISDI-N 128

Query: 202 FIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHL 261
            +    +L  L L +N I     I  L+ L  L+ L+L  N    +I   +    KL++L
Sbjct: 129 GLVHLPQLESLYLGNNKITD---ITVLSRLTKLDTLSLEDNQIS-DIV-PLAGLTKLQNL 183

Query: 262 KLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIP 321
            L +N ++      +  L NL++LE           +   NL     +      L +  P
Sbjct: 184 YLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVT--P 239

Query: 322 KELGFCANLTFLELSINNLT 341
           + +    +     +  +   
Sbjct: 240 EIISDDGDYEKPNVKWHLPE 259

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 72.8 bits (179), Expect = 3e-14
 Identities = 57/250 (22%), Positives = 97/250 (38%), Gaps = 30/250 (12%)

Query: 201 SFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRH 260
                 ++ +  +L    +   +   +L    +++ +    +  +  +   I+  P +  
Sbjct: 18  FSDDAFAETIKDNLKKKSVTDAVTQNELN---SIDQIIANNSDIK-SVQ-GIQYLPNVTK 72

Query: 261 LKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSI 320
           L L  NKLT   P  +  L NL  L   EN    L  SSL +L++L+ L+L+  G++   
Sbjct: 73  LFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKSLSLEHNGISDIN 128

Query: 321 PKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGK 380
              L     L  L L  N +T    LS   L ++  L + +NQ+S+I+ L          
Sbjct: 129 G--LVHLPQLESLYLGNNKITDITVLS--RLTKLDTLSLEDNQISDIVPLA--------- 175

Query: 381 LPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLV 440
                  L KL+ LYL  N  S      +  L NL  L+L +        +   NL    
Sbjct: 176 ------GLTKLQNLYLSKNHISDLRA--LAGLKNLDVLELFSQECLNKPINHQSNLVVPN 227

Query: 441 KLSLSSNQLT 450
            +  +   L 
Sbjct: 228 TVKNTDGSLV 237

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 69.7 bits (171), Expect = 3e-13
 Identities = 57/232 (24%), Positives = 90/232 (38%), Gaps = 17/232 (7%)

Query: 60  NEVGSISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDL 119
           NE+ SI +I   NS +  ++ G  +   PN+T L LN  N +  I   + N   L  L L
Sbjct: 43  NELNSIDQIIANNSDIK-SVQGIQY--LPNVTKLFLN-GNKLTDIK-PLANLKNLGWLFL 97

Query: 120 SSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVK 179
             N + + +   +  L  L+ L L +N ++  I   L +L     L +G N + D     
Sbjct: 98  DENKVKD-LSS-LKDLKKLKSLSLEHNGIS-DING-LVHLPQLESLYLGNNKITDITV-- 151

Query: 180 FKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNL 239
              +  L  L L+ N +      +A  +KL  L LS N I     +  L  L+NL+ L L
Sbjct: 152 LSRLTKLDTLSLEDNQISDI-VPLAGLTKLQNLYLSKNHISD---LRALAGLKNLDVLEL 207

Query: 240 TKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENL 291
                  +             +K     L    P+ I    + E      +L
Sbjct: 208 FSQECLNKPINHQSNLVVPNTVKNTDGSLVT--PEIISDDGDYEKPNVKWHL 257

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 69.3 bits (170), Expect = 4e-13
 Identities = 62/273 (22%), Positives = 106/273 (38%), Gaps = 25/273 (9%)

Query: 90  LTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLT 149
           L +  + +   +  I        + I  +L   ++T+ +      L+ +  ++  N+ + 
Sbjct: 3   LGSETITVPTPIKQIF-SDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIK 59

Query: 150 GQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKL 209
             +   +  L N   L +  N L D  P     + +L  L+LD N ++   S + +  KL
Sbjct: 60  -SVQG-IQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL-SSLKDLKKL 114

Query: 210 MFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLT 269
             L L  N I     I  L HL  LE L L  N         +    KL  L L  N+++
Sbjct: 115 KSLSLEHNGISD---INGLVHLPQLESLYLGNNKI--TDITVLSRLTKLDTLSLEDNQIS 169

Query: 270 GTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCAN 329
             +P  +  L+ L+ L   +N    L   +L  L+ L  L L S      + K +   +N
Sbjct: 170 DIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFS---QECLNKPINHQSN 222

Query: 330 LTFLELSINNLTGSLPLSLASLRQISELGISNN 362
           L     ++ N  G    SL +   IS+ G    
Sbjct: 223 LVVPN-TVKNTDG----SLVTPEIISDDGDYEK 250

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 59.3 bits (144), Expect = 8e-10
 Identities = 54/274 (19%), Positives = 85/274 (31%), Gaps = 59/274 (21%)

Query: 327 CANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIG 386
            A      L   ++T ++  +   L  I ++  +N+ +  +                 I 
Sbjct: 23  FAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIKSV---------------QGIQ 65

Query: 387 LLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSS 446
            LP +  L+L  NK +   P  + NL NL  L L  N       S++ +L  L  LSL  
Sbjct: 66  YLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDEN--KVKDLSSLKDLKKLKSLSLEH 121

Query: 447 NQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGP 506
           N ++     +I                            G+     L  L    NK+   
Sbjct: 122 NGIS-----DI---------------------------NGLVHLPQLESLYLGNNKIT-- 147

Query: 507 IPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLS 566
               L   T L  + LE N++  DI   L     LQ + L  N +S +         NL 
Sbjct: 148 DITVLSRLTKLDTLSLEDNQIS-DIVP-LAGLTKLQNLYLSKNHISDL--RALAGLKNLD 203

Query: 567 NFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLT 600
              +              NL     +   D  L 
Sbjct: 204 VLELFSQECLNKPINHQSNLVVPNTVKNTDGSLV 237

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A Length = 291

 Score = 53.1 bits (128), Expect = 1e-07
 Identities = 52/254 (20%), Positives = 89/254 (35%), Gaps = 46/254 (18%)

Query: 388 LPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSN 447
             +     L     +  + Q    L ++  +   N+    S+   I  L ++ KL L+ N
Sbjct: 23  FAETIKDNLKKKSVTDAVTQN--ELNSIDQIIANNSDIK-SV-QGIQYLPNVTKLFLNGN 78

Query: 448 QLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPI 507
           +LT        + K     + L  +    N                      V  L    
Sbjct: 79  KLT--------DIKPLANLKNLGWLFLDENK---------------------VKDL---- 105

Query: 508 PESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSN 567
             SL +   L  + LE N +  DI   L   P L+ + LG+N+++ +  +   + T L  
Sbjct: 106 -SSLKDLKKLKSLSLEHNGIS-DING-LVHLPQLESLYLGNNKITDI--TVLSRLTKLDT 160

Query: 568 FRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKI 627
             +  N+I   +P  L  LT LQNL +  N ++  + A L     L  L L   +  +K 
Sbjct: 161 LSLEDNQISDIVP--LAGLTKLQNLYLSKNHIS-DLRA-LAGLKNLDVLELFSQECLNKP 216

Query: 628 PAEIGKLSRLQYLD 641
                 L     + 
Sbjct: 217 INHQSNLVVPNTVK 230

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 76.8 bits (189), Expect = 3e-15
 Identities = 47/184 (25%), Positives = 74/184 (40%), Gaps = 17/184 (9%)

Query: 117 LDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLT----GQIPHQLSNLQNAWLLRIGANYL 172
           L  S   L N +P  +   S   +L L +N+L+       P +L+NL +   L +  N+L
Sbjct: 23  LSCSKQQLPN-VPQSL--PSYTALLDLSHNNLSRLRAEWTPTRLTNLHS---LLLSHNHL 76

Query: 173 EDPDPVKFKGMASLTDLWLDYNLLEKFPSFI-AECSKLMFLDLSDNLIMGHIPIEQLTHL 231
                  F  + +L  L L  N L     F+ ++   L  L L +N I   +       +
Sbjct: 77  NFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHI-VVVDRNAFEDM 135

Query: 232 ENLEYLNLTKN---SFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNL--EILE 286
             L+ L L++N    F  E+ ++    PKL  L L  NKL      ++  L       L 
Sbjct: 136 AQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLY 195

Query: 287 FHEN 290
            H N
Sbjct: 196 LHNN 199

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 70.3 bits (172), Expect = 4e-13
 Identities = 45/165 (27%), Positives = 64/165 (38%), Gaps = 33/165 (20%)

Query: 81  GFDFSAFPNLTALNLNMNNLVGSIPAGI-GNATKLILLDLSSNNLTNPIPPEI-GYLSDL 138
            +  +   NL +L L+ N+L   I +        L  LDLSSN+L   +   +   L  L
Sbjct: 57  EWTPTRLTNLHSLLLSHNHL-NFISSEAFVPVPNLRYLDLSSNHLHT-LDEFLFSDLQAL 114

Query: 139 RVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEK 198
            VLLLYNN +   +                           F+ MA L  L+L  N + +
Sbjct: 115 EVLLLYNNHIV-VVDRNA-----------------------FEDMAQLQKLYLSQNQISR 150

Query: 199 FP----SFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNL 239
           FP        +  KLM LDLS N +   +P+  L  L       L
Sbjct: 151 FPVELIKDGNKLPKLMLLDLSSNKLK-KLPLTDLQKLPAWVKNGL 194

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 62.9 bits (153), Expect = 1e-10
 Identities = 45/195 (23%), Positives = 73/195 (37%), Gaps = 30/195 (15%)

Query: 266 NKLTGTIPDEIGLLSNLEILEFHENLFHGLIP-SSLGNLRRLQRLNLKSAGLNSSIPKE- 323
            +L   +P    L S   +L+   N    L    +   L  L  L L    L + I  E 
Sbjct: 28  QQLP-NVPQ--SLPSYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHL-NFISSEA 83

Query: 324 LGFCANLTFLELSINNLTGSLP-LSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLP 382
                NL +L+LS N+L  +L     + L+ +  L + NN +  +               
Sbjct: 84  FVPVPNLRYLDLSSNHLH-TLDEFLFSDLQALEVLLLYNNHIVVV--------------D 128

Query: 383 PEI-GLLPKLEYLYLFDNKFSGPIPQQI----GNLTNLFDLQLANNFFNGSIPSTIGNLS 437
                 + +L+ LYL  N+ S   P ++      L  L  L L++N       + +  L 
Sbjct: 129 RNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLP 187

Query: 438 SLVK--LSLSSNQLT 450
           + VK  L L +N L 
Sbjct: 188 AWVKNGLYLHNNPLE 202

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 59.5 bits (144), Expect = 1e-09
 Identities = 29/134 (21%), Positives = 54/134 (40%), Gaps = 10/134 (7%)

Query: 515 TGLTRVRLEQNRLDG-DITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGN 573
           +    + L  N L             +L  + L  N L+ + +  +    NL    +S N
Sbjct: 39  SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98

Query: 574 RIKGGIPAE-LGNLTYLQNLDIFDNQLTGKIPAQLFRS-SFLIRLNLRRNQLSDKIPAEI 631
            +   +      +L  L+ L +++N +   +    F   + L +L L +NQ+S + P E+
Sbjct: 99  HLH-TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQIS-RFPVEL 155

Query: 632 ----GKLSRLQYLD 641
                KL +L  LD
Sbjct: 156 IKDGNKLPKLMLLD 169

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 55.2 bits (133), Expect = 3e-08
 Identities = 30/132 (22%), Positives = 53/132 (40%), Gaps = 7/132 (5%)

Query: 515 TGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNR 574
           T L  + L  N L+   + A    P+L+Y+DL  N L  +    +     L    +  N 
Sbjct: 64  TNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQALEVLLLYNNH 123

Query: 575 IKGGIPAE-LGNLTYLQNLDIFDNQLTGKIPAQLFRS----SFLIRLNLRRNQLSDKIPA 629
           I   +      ++  LQ L +  NQ++ + P +L +       L+ L+L  N+L      
Sbjct: 124 IVV-VDRNAFEDMAQLQKLYLSQNQIS-RFPVELIKDGNKLPKLMLLDLSSNKLKKLPLT 181

Query: 630 EIGKLSRLQYLD 641
           ++ KL       
Sbjct: 182 DLQKLPAWVKNG 193

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 47.1 bits (112), Expect = 9e-06
 Identities = 26/95 (27%), Positives = 37/95 (38%), Gaps = 7/95 (7%)

Query: 78  TLDGFDFSAFPNLTALNLNMNNLVGSIPAGI-GNATKLILLDLSSNNLTNPIPPEI---- 132
           TLD F FS    L  L L  N++V  +      +  +L  L LS N ++   P E+    
Sbjct: 102 TLDEFLFSDLQALEVLLLYNNHIV-VVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDG 159

Query: 133 GYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRI 167
             L  L +L L +N L       L  L       +
Sbjct: 160 NKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGL 194

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 70.4 bits (173), Expect = 1e-13
 Identities = 40/232 (17%), Positives = 80/232 (34%), Gaps = 19/232 (8%)

Query: 82  FDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVL 141
           F      N    NL   ++  +        + +   +  ++N+ +     + + ++L+ L
Sbjct: 13  FPDPGLANAVKQNLGKQSV--TDLVSQKELSGVQNFNGDNSNIQSLAG--MQFFTNLKEL 68

Query: 142 LLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPS 201
            L +N ++   P  L +L     L +  N L++ + +       L+ L+LD N L     
Sbjct: 69  HLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPSA---CLSRLFLDNNELRDT-D 122

Query: 202 FIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHL 261
            +     L  L + +N +     I  L  L  LE L+L  N         +    K+  +
Sbjct: 123 SLIHLKNLEILSIRNNKLKS---IVMLGFLSKLEVLDLHGNEITNTGG--LTRLKKVNWI 177

Query: 262 KLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLI-PSSLGNLRRLQRLNLK 312
            L   K      + +     L I    ++     I P  + N        + 
Sbjct: 178 DLTGQKCV---NEPVKYQPELYITNTVKDPDGRWISPYYISNGGSYVDGCVL 226

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 66.6 bits (163), Expect = 2e-12
 Identities = 44/253 (17%), Positives = 81/253 (32%), Gaps = 33/253 (13%)

Query: 201 SFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRH 260
                 +  +  +L    +     +     L  ++  N   ++ +  +   ++ F  L+ 
Sbjct: 13  FPDPGLANAVKQNLGKQSVTD---LVSQKELSGVQNFNGDNSNIQ-SLA-GMQFFTNLKE 67

Query: 261 LKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSI 320
           L L  N+++   P  +  L+ LE L  + N    L       L    RL L +  L    
Sbjct: 68  LHLSHNQISDLSP--LKDLTKLEELSVNRNRLKNLNGIPSACLS---RLFLDNNELRD-- 120

Query: 321 PKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGK 380
              L    NL  L +  N L  S+   L  L ++  L +  N+++    L          
Sbjct: 121 TDSLIHLKNLEILSIRNNKLK-SIV-MLGFLSKLEVLDLHGNEITNTGGLT--------- 169

Query: 381 LPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSI-PSTIGNLSSL 439
                  L K+ ++ L   K      + +     L+      +     I P  I N  S 
Sbjct: 170 ------RLKKVNWIDLTGQKCV---NEPVKYQPELYITNTVKDPDGRWISPYYISNGGSY 220

Query: 440 VKLSLSSNQLTGT 452
           V   +       T
Sbjct: 221 VDGCVLWELPVYT 233

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 52.3 bits (126), Expect = 1e-07
 Identities = 39/245 (15%), Positives = 80/245 (32%), Gaps = 36/245 (14%)

Query: 356 ELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNL 415
           E       ++++                    L       L     +  + Q+   L+ +
Sbjct: 1   ESIQRPTPINQVFPDPG---------------LANAVKQNLGKQSVTDLVSQK--ELSGV 43

Query: 416 FDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFS 475
            +    N+  N    + +   ++L +L LS NQ++  L P    +K       L  +S +
Sbjct: 44  QNFNGDNS--NIQSLAGMQFFTNLKELHLSHNQIS-DLSPLKDLTK-------LEELSVN 93

Query: 476 YNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNAL 535
            N     L         L  L  + N+L     +SL +   L  + +  N+L   I   L
Sbjct: 94  RNRLK-NLNGI--PSACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLK-SIVM-L 146

Query: 536 GIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIF 595
           G    L+ +DL  N+++        +   ++   ++G +           L     +   
Sbjct: 147 GFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNEPVKYQPELYITNTVKDP 204

Query: 596 DNQLT 600
           D +  
Sbjct: 205 DGRWI 209

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.9 bits (104), Expect = 7e-05
 Identities = 28/133 (21%), Positives = 51/133 (38%), Gaps = 11/133 (8%)

Query: 509 ESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNF 568
                     +  L +  +  D+ +       +Q  +  ++ +  +  +     TNL   
Sbjct: 13  FPDPGLANAVKQNLGKQSVT-DLVS-QKELSGVQNFNGDNSNIQSL--AGMQFFTNLKEL 68

Query: 569 RISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIP 628
            +S N+I    P  L +LT L+ L +  N+L   +      S+ L RL L  N+L D   
Sbjct: 69  HLSHNQISDLSP--LKDLTKLEELSVNRNRLK-NLNG--IPSACLSRLFLDNNELRD--T 121

Query: 629 AEIGKLSRLQYLD 641
             +  L  L+ L 
Sbjct: 122 DSLIHLKNLEILS 134

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes} Length = 263

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 29/150 (19%), Positives = 62/150 (41%), Gaps = 13/150 (8%)

Query: 492 NLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQL 551
            +     + + +       +   T L  + L  N++  D++  L     L+ + +  N+L
Sbjct: 42  GVQNFNGDNSNIQ--SLAGMQFFTNLKELHLSHNQIS-DLSP-LKDLTKLEELSVNRNRL 97

Query: 552 SGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSS 611
             +   N      LS   +  N ++      L +L  L+ L I +N+L   I   L   S
Sbjct: 98  KNL---NGIPSACLSRLFLDNNELRDTDS--LIHLKNLEILSIRNNKLK-SIVM-LGFLS 150

Query: 612 FLIRLNLRRNQLSDKIPAEIGKLSRLQYLD 641
            L  L+L  N++++     + +L ++ ++D
Sbjct: 151 KLEVLDLHGNEITNTGG--LTRLKKVNWID 178

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 69.6 bits (171), Expect = 2e-13
 Identities = 57/194 (29%), Positives = 89/194 (45%), Gaps = 14/194 (7%)

Query: 103 SIPAGIGNATKLILLDLSSNNLTNPIPPEI-GYLSDLRVLLLYNNSLT---GQIPHQLSN 158
           +IP+ I   TK   LDL SN L++ +P +    L+ LR+L L +N L      I  +L N
Sbjct: 30  AIPSNIPADTKK--LDLQSNKLSS-LPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKN 86

Query: 159 LQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFI-AECSKLMFLDLSDN 217
           L+  W+     N L+      F  + +L +L LD N L+  P  +    +KL +L L  N
Sbjct: 87  LETLWVTD---NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN 143

Query: 218 LIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREI-KTFPKLRHLKLGQNKLTGTIPDEI 276
            +   +P      L +L+ L L  N  +  +P        +L+ LKL  N+L        
Sbjct: 144 EL-QSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAF 201

Query: 277 GLLSNLEILEFHEN 290
             L  L++L+  EN
Sbjct: 202 DSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 66.5 bits (163), Expect = 3e-12
 Identities = 55/208 (26%), Positives = 90/208 (43%), Gaps = 31/208 (14%)

Query: 118 DLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIP----HQLSNLQNAWLLRIGANYLE 173
           D SS  LT  IP  I   +D + L L +N L+  +P    H+L+ L+  +L     N L+
Sbjct: 22  DCSSKKLTA-IPSNI--PADTKKLDLQSNKLS-SLPSKAFHRLTKLRLLYL---NDNKLQ 74

Query: 174 DPDPVKFKGMASLTDLWLDYNLLEKFPSFI-AECSKLMFLDLSDNLIMGHIPIEQLTHLE 232
                 FK + +L  LW+  N L+  P  +  +   L  L L  N +   +P      L 
Sbjct: 75  TLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQL-KSLPPRVFDSLT 133

Query: 233 NLEYLNLTKNSFEGEIPREIKTFP--------KLRHLKLGQNKLTGTIPDEI-GLLSNLE 283
            L YL+L  N        E+++ P         L+ L+L  N+L   +P+     L+ L+
Sbjct: 134 KLTYLSLGYN--------ELQSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELK 184

Query: 284 ILEFHENLFHGLIPSSLGNLRRLQRLNL 311
            L+   N    +   +  +L +L+ L L
Sbjct: 185 TLKLDNNQLKRVPEGAFDSLEKLKMLQL 212

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 60.4 bits (147), Expect = 3e-10
 Identities = 56/193 (29%), Positives = 85/193 (44%), Gaps = 32/193 (16%)

Query: 266 NKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIP---- 321
            KLT  IP    + ++ + L+   N    L   +   L +L+ L L    L  ++P    
Sbjct: 26  KKLT-AIPS--NIPADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKL-QTLPAGIF 81

Query: 322 KELGFCANLTFLELSINNLTGSLPLSL-ASLRQISELGISNNQLSEIISLQLQMNDLSGK 380
           KEL    NL  L ++ N L  +LP+ +   L  ++EL +  NQL                
Sbjct: 82  KEL---KNLETLWVTDNKLQ-ALPIGVFDQLVNLAELRLDRNQLK--------------S 123

Query: 381 LPPEI-GLLPKLEYLYLFDNKFSGPIPQQI-GNLTNLFDLQLANNFFNGSIPSTI-GNLS 437
           LPP +   L KL YL L  N+    +P+ +   LT+L +L+L NN     +P      L+
Sbjct: 124 LPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLT 181

Query: 438 SLVKLSLSSNQLT 450
            L  L L +NQL 
Sbjct: 182 ELKTLKLDNNQLK 194

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 59.2 bits (144), Expect = 8e-10
 Identities = 53/227 (23%), Positives = 86/227 (37%), Gaps = 53/227 (23%)

Query: 328 ANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEI-G 386
           A+   L+L  N L+     +   L ++  L +++N+L                LP  I  
Sbjct: 37  ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT--------------LPAGIFK 82

Query: 387 LLPKLEYLYLFDNKFSGPIPQQI-GNLTNLFDLQLANNFFNGSIPSTI-GNLSSLVKLSL 444
            L  LE L++ DNK    +P  +   L NL +L+L  N    S+P  +  +L+ L  LSL
Sbjct: 83  ELKNLETLWVTDNKLQA-LPIGVFDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSL 140

Query: 445 SSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRG-GNLIYLTANVNKL 503
             N+L                                 LP G+     +L  L    N+L
Sbjct: 141 GYNELQ-------------------------------SLPKGVFDKLTSLKELRLYNNQL 169

Query: 504 VGPIPESLW-NCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDN 549
              +PE  +   T L  ++L+ N+L      A      L+ + L +N
Sbjct: 170 KR-VPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 58.5 bits (142), Expect = 1e-09
 Identities = 48/209 (22%), Positives = 81/209 (38%), Gaps = 34/209 (16%)

Query: 391 LEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTI-GNLSSLVKLSLSSNQL 449
            + L L  NK S    +    LT L  L L +N    ++P+ I   L +L  L ++ N+L
Sbjct: 39  TKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQ-TLPAGIFKELKNLETLWVTDNKL 97

Query: 450 TGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRG-GNLIYLTANVNKLVGPIP 508
              LP  + +         L  +    N     LPP +      L YL+   N+L   +P
Sbjct: 98  Q-ALPIGVFD-----QLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQS-LP 149

Query: 509 ESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNF 568
           + +++   LT                      L+ + L +NQL  V    + K T L   
Sbjct: 150 KGVFD--KLTS---------------------LKELRLYNNQLKRVPEGAFDKLTELKTL 186

Query: 569 RISGNRIKGGIPAELGNLTYLQNLDIFDN 597
           ++  N++K        +L  L+ L + +N
Sbjct: 187 KLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 53.4 bits (129), Expect = 6e-08
 Identities = 34/113 (30%), Positives = 47/113 (41%), Gaps = 4/113 (3%)

Query: 84  FSAFPNLTALNLNMNNLVGSIPAGI-GNATKLILLDLSSNNLTNPIPPEI-GYLSDLRVL 141
           F    NL  L L+ N L  S+P  +  + TKL  L L  N L + +P  +   L+ L+ L
Sbjct: 105 FDQLVNLAELRLDRNQLK-SLPPRVFDSLTKLTYLSLGYNELQS-LPKGVFDKLTSLKEL 162

Query: 142 LLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYN 194
            LYNN L          L     L++  N L+      F  +  L  L L  N
Sbjct: 163 RLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQEN 215

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri} Length = 270

 Score = 49.6 bits (119), Expect = 9e-07
 Identities = 42/190 (22%), Positives = 73/190 (38%), Gaps = 28/190 (14%)

Query: 477 NNFSGKLPPGIC-------------RG---------GNLIYLTANVNKLVGPIPESLWNC 514
           N    K   G+C             +           +   L    NKL     ++    
Sbjct: 1   NEALCKKDGGVCSCNNNKNSVDCSSKKLTAIPSNIPADTKKLDLQSNKLSSLPSKAFHRL 60

Query: 515 TGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNR 574
           T L  + L  N+L            +L+ + + DN+L  +    + +  NL+  R+  N+
Sbjct: 61  TKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQ 120

Query: 575 IKGGIPAEL-GNLTYLQNLDIFDNQLTGKIPAQLFRS-SFLIRLNLRRNQLSDKIPAEI- 631
           +K  +P  +  +LT L  L +  N+L   +P  +F   + L  L L  NQL  ++P    
Sbjct: 121 LKS-LPPRVFDSLTKLTYLSLGYNELQ-SLPKGVFDKLTSLKELRLYNNQLK-RVPEGAF 177

Query: 632 GKLSRLQYLD 641
            KL+ L+ L 
Sbjct: 178 DKLTELKTLK 187

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 71.3 bits (174), Expect = 4e-13
 Identities = 60/313 (19%), Positives = 101/313 (32%), Gaps = 53/313 (16%)

Query: 144 YNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMA-----SLTDLWLDYNLLEK 198
              S+  + P   +   + WL  + A  L D  P     +      S  +  L  +  E 
Sbjct: 281 APLSVEWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPEC 340

Query: 199 FPSFIAECSKLMFLDLSDN-LIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPK 257
           +    A   +L   +LS     +    +E    L+ LE  N         + R +     
Sbjct: 341 WCRDSATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLY 400

Query: 258 LRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLN 317
            +      + L    P     L +L      EN               ++ L+L    L 
Sbjct: 401 EKETLQYFSTLKAVDPMRAAYLDDLRSKFLLEN------SVLKMEYADVRVLHLAHKDL- 453

Query: 318 SSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDL 377
           + +   L     +T L+LS N L  +LP +LA+LR +  L  S+N L  +          
Sbjct: 454 TVLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV---------- 501

Query: 378 SGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLS 437
                  +  LP+L+ L L +N        ++     +  L                +  
Sbjct: 502 -----DGVANLPRLQELLLCNN--------RLQQSAAIQPL---------------VSCP 533

Query: 438 SLVKLSLSSNQLT 450
            LV L+L  N L 
Sbjct: 534 RLVLLNLQGNSLC 546

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 70.2 bits (171), Expect = 1e-12
 Identities = 42/238 (17%), Positives = 70/238 (29%), Gaps = 31/238 (13%)

Query: 27  LLNWKSSLVSSSLPSWTAINSNSGPCNWNGIQCNEVGSISEINLANSGLDGTLDGFDFSA 86
           L   KS+++ S L S   +        W  +    +    +  L                
Sbjct: 356 LSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVD 415

Query: 87  FPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNN 146
                 L+   +  +            + +L L+  +LT      +  L  +  L L +N
Sbjct: 416 PMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL--CHLEQLLLVTHLDLSHN 473

Query: 147 SLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAEC 206
            L   +P  L+ L+                         L  L    N LE     +A  
Sbjct: 474 RLR-ALPPALAALRC------------------------LEVLQASDNALENVDG-VANL 507

Query: 207 SKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKN---SFEGEIPREIKTFPKLRHL 261
            +L  L L +N +     I+ L     L  LNL  N     EG   R  +  P +  +
Sbjct: 508 PRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSI 565

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 69.8 bits (170), Expect = 1e-12
 Identities = 46/350 (13%), Positives = 100/350 (28%), Gaps = 30/350 (8%)

Query: 75  LDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGY 134
               L   +         ++     L       +   +++  L L  +     +      
Sbjct: 232 HRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEWRTPD 291

Query: 135 LSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPD--------PVKFKGMASL 186
             +    +   +     +  QL       +     +  E                    L
Sbjct: 292 GRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQL 351

Query: 187 TDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEG 246
               L         S +  C +L  L+  +   +    +  +  +  L+ L   K + + 
Sbjct: 352 FRCELSVEKSTVLQSELESCKELQELEPENKWCL----LTIILLMRALDPLLYEKETLQY 407

Query: 247 EIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRL 306
               +     +  +L   ++K            +++ +L         L    L  L  +
Sbjct: 408 FSTLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL--CHLEQLLLV 465

Query: 307 QRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSE 366
             L+L    L  ++P  L     L  L+ S N L  ++   +A+L ++ EL + NN+L +
Sbjct: 466 THLDLSHNRL-RALPPALAALRCLEVLQASDNALE-NVD-GVANLPRLQELLLCNNRLQQ 522

Query: 367 IISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLF 416
             ++Q             +   P+L  L L  N            L  + 
Sbjct: 523 SAAIQ------------PLVSCPRLVLLNLQGNSLCQ-EEGIQERLAEML 559

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 62.1 bits (150), Expect = 3e-10
 Identities = 37/241 (15%), Positives = 75/241 (31%), Gaps = 21/241 (8%)

Query: 406 PQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFG 465
            +       LF  +L+       + S + +   L +L   +     T+   +        
Sbjct: 342 CRDSATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPL-- 398

Query: 466 PRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQN 525
             + +     ++      P          YL    +K +            +  + L   
Sbjct: 399 -LYEKETLQYFSTLKAVDPM------RAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHK 451

Query: 526 RLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGN 585
            L   + + L     + ++DL  N+L   L         L   + S N ++  +   + N
Sbjct: 452 DLT-VLCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVAN 506

Query: 586 LTYLQNLDIFDNQLTG-KIPAQLFRSSFLIRLNLRRNQLSDKIPAEIGK----LSRLQYL 640
           L  LQ L + +N+L        L     L+ LNL+ N L  +      +    L  +  +
Sbjct: 507 LPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC-QEEGIQERLAEMLPSVSSI 565

Query: 641 D 641
            
Sbjct: 566 L 566

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 54.8 bits (131), Expect = 6e-08
 Identities = 39/253 (15%), Positives = 76/253 (30%), Gaps = 17/253 (6%)

Query: 390 KLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQL 449
            L    L D               +  +  L  +               L +  LS  + 
Sbjct: 303 DLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPE-CWCRDSATDEQLFRCELSVEKS 361

Query: 450 TGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPE 509
           T  L  E+ + K       L+ +          +   I     L  L      L      
Sbjct: 362 T-VLQSELESCKE------LQELEPENKWCLLTI---ILLMRALDPLLYEKETLQYFSTL 411

Query: 510 SLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFR 569
              +      +   +++   + +     Y D++ + L    L+ +   +  +   +++  
Sbjct: 412 KAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL--CHLEQLLLVTHLD 469

Query: 570 ISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSD-KIP 628
           +S NR++  +P  L  L  L+ L   DN L   +   +     L  L L  N+L      
Sbjct: 470 LSHNRLRA-LPPALAALRCLEVLQASDNALE-NVDG-VANLPRLQELLLCNNRLQQSAAI 526

Query: 629 AEIGKLSRLQYLD 641
             +    RL  L+
Sbjct: 527 QPLVSCPRLVLLN 539

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 54.4 bits (130), Expect = 7e-08
 Identities = 57/416 (13%), Positives = 105/416 (25%), Gaps = 88/416 (21%)

Query: 141 LLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFP 200
              Y+  L G+                    +    P+          L +D   L    
Sbjct: 228 AWFYHRWLLGRAEPHDVLCCVHVSREEACLSVCFSRPLTVGSRMGTLLLMVDEAPLSVEW 287

Query: 201 SFIAECSKLMFLDLSDNLIMG-------HIPIEQLTHLENLEYLNLTKNSFEGEIPREIK 253
                 ++   + L D            H      T  ++ +   L K+  E    R+  
Sbjct: 288 RTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECW-CRDSA 346

Query: 254 TFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKS 313
           T  +L   +L   K T  +  E+     L+ LE         I   +  L  L       
Sbjct: 347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETL 405

Query: 314 AGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQ 373
              ++   K +       +L+   +       +       +  L +++  L+ +      
Sbjct: 406 QYFSTL--KAVDPM-RAAYLDDLRSKFLLENSVLKMEYADVRVLHLAHKDLTVL------ 456

Query: 374 MNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTI 433
                      +  L  + +L L  N+                           ++P  +
Sbjct: 457 ---------CHLEQLLLVTHLDLSHNRLR-------------------------ALPPAL 482

Query: 434 GNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNL 493
             L  L  L  S N L   +                             LP        L
Sbjct: 483 AALRCLEVLQASDNALE-NVDG------------------------VANLP-------RL 510

Query: 494 IYLTANVNKLVG-PIPESLWNCTGLTRVRLEQNRL---DGDITNALGIYPDLQYID 545
             L    N+L      + L +C  L  + L+ N L   +G       + P +  I 
Sbjct: 511 QELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLPSVSSIL 566

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A* Length = 567

 Score = 51.7 bits (123), Expect = 5e-07
 Identities = 35/221 (15%), Positives = 67/221 (30%), Gaps = 16/221 (7%)

Query: 381 LPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLV 440
              +     +L    L   K S  +  ++ +   L +L+  N +   +I   +  L  L+
Sbjct: 341 WCRDSATDEQLFRCELSVEK-STVLQSELESCKELQELEPENKWCLLTIILLMRALDPLL 399

Query: 441 KLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANV 500
               +             ++     P     +    + F  +         ++  L    
Sbjct: 400 YEKETLQYF---------STLKAVDPMRAAYLDDLRSKFLLENSVLKMEYADVRVLHLAH 450

Query: 501 NKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWG 560
             L   +   L     +T + L  NRL   +  AL     L+ +   DN L  V      
Sbjct: 451 KDLT--VLCHLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV--DGVA 505

Query: 561 KCTNLSNFRISGNRIKG-GIPAELGNLTYLQNLDIFDNQLT 600
               L    +  NR++       L +   L  L++  N L 
Sbjct: 506 NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLC 546

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 70.3 bits (171), Expect = 1e-12
 Identities = 73/485 (15%), Positives = 135/485 (27%), Gaps = 157/485 (32%)

Query: 31  KSSLVSSSLPSWTAINSNSGPCNW-NGIQCNEVGSISEINLANSGLDGTLDGFDFSAFPN 89
           K+ +      S+           W N   CN   ++ E+ L    L   +D       PN
Sbjct: 163 KTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEM-LQK--LLYQID-------PN 212

Query: 90  LTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLT 149
            T+ + + +N+                  L  +++          L  L     Y N L 
Sbjct: 213 WTSRSDHSSNI-----------------KLRIHSIQA-------ELRRLLKSKPYENCLL 248

Query: 150 GQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKL 209
             +   L N+QNA                                      +F   C  L
Sbjct: 249 --V---LLNVQNAKAWN----------------------------------AFNLSCKIL 269

Query: 210 M------FLDLSDNLIMGHIPIEQ----LTHLENLEYLNLTKNSFEGEIPREI-KTFP-- 256
           +        D        HI ++     LT  E    L    +    ++PRE+  T P  
Sbjct: 270 LTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRR 329

Query: 257 ------KLRH--------LKLGQNKLTGTI--------PDEI-GLLSNLEILEFHENLFH 293
                  +R           +  +KLT  I        P E   +   L +  F  +   
Sbjct: 330 LSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV--FPPSA-- 385

Query: 294 GLIPSSLGNLRRLQRL--NLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLP-LSLAS 350
             IP+ L     L  +  ++      S +   +      + +E      T S+P + L  
Sbjct: 386 -HIPTIL-----LSLIWFDVIK----SDVMVVVNKLHKYSLVEKQPKESTISIPSIYLEL 435

Query: 351 LRQISELGISNNQLSE--IISLQLQMNDLSGKLPPE-------IG-------------LL 388
             ++      +  + +   I      +DL    P         IG             L 
Sbjct: 436 KVKLENEYALHRSIVDHYNIPKTFDSDDLI--PPYLDQYFYSHIGHHLKNIEHPERMTLF 493

Query: 389 PKLEYL-YLF-DNKF--SGPIPQQIGNLTNLF-DLQLANNFFNGSIPSTIGNLSSLVKLS 443
             + +L + F + K           G++ N    L+    +   + P     +++++   
Sbjct: 494 RMV-FLDFRFLEQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFL 552

Query: 444 LSSNQ 448
               +
Sbjct: 553 PKIEE 557

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 64.5 bits (156), Expect = 7e-11
 Identities = 77/417 (18%), Positives = 125/417 (29%), Gaps = 112/417 (26%)

Query: 127 PIPPEIGYLSDLRVLLLYNNSLTGQI--PHQLSNLQNAWLLRIGANYLEDPDPVKFKGMA 184
           P      Y+     L  YN+    Q+   + +S LQ    LR     L     V   G+ 
Sbjct: 105 PSMMTRMYIEQRDRL--YND---NQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVL 159

Query: 185 -----SLT-DLWLDYNLLEKFPSFIAECSKLMF-LDLSDNLIMGHIPIEQLTHLENLEYL 237
                 +  D+ L Y +  K    I       F L+L +     + P   L  L+ L   
Sbjct: 160 GSGKTWVALDVCLSYKVQCKMDFKI-------FWLNLKNC----NSPETVLEMLQKL-LY 207

Query: 238 NLTKNSFEGE-----IPREIKTF-PKLRHL---KLGQNKLTGTIPDEIGLLSNLEILE-F 287
            +  N          I   I +   +LR L   K  +N L   +   +    N +    F
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCL--LVLLNV---QNAKAWNAF 262

Query: 288 HENL---------FHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKE-LGFCANLTFLELSI 337
             NL         F  +             L+  S  L    P E         +L+   
Sbjct: 263 --NLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLT---PDEVKSLLLK--YLDCRP 315

Query: 338 NNL-----TGSLPLSL----ASLRQISE-----LGISNNQLSEIISLQLQMNDLSGKLPP 383
            +L     T + P  L     S+R           ++ ++L+ II   L  N L    P 
Sbjct: 316 QDLPREVLTTN-PRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSL--NVLE---PA 369

Query: 384 EIGLLPKLEYLYLFDNKFSGPIPQQI-----GNLTNLFDLQLANNFFNGSI------PST 432
           E       + L +F    S  IP  +      ++     + + N     S+       ST
Sbjct: 370 E--YRKMFDRLSVFPP--SAHIPTILLSLIWFDVIKSDVMVVVNKLHKYSLVEKQPKEST 425

Query: 433 IG-------------NLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSY 476
           I              N  +L +  +    +  T   +      D  P +L    +S+
Sbjct: 426 ISIPSIYLELKVKLENEYALHRSIVDHYNIPKTFDSD------DLIPPYLDQYFYSH 476

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 62.3 bits (152), Expect = 8e-11
 Identities = 51/215 (23%), Positives = 92/215 (42%), Gaps = 36/215 (16%)

Query: 91  TALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTG 150
              NL   ++             +  +  +++++ +     I YL ++R L L  N L  
Sbjct: 22  IKANLKKKSVT-DAVTQNE-LNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLH- 76

Query: 151 QIP--HQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFI-AECS 207
            I    +L+NL    L     N L+      F  + +L +L L  N L+  P  +  + +
Sbjct: 77  DISALKELTNLTYLIL---TGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLT 133

Query: 208 KLMFLDLSDNLIMGHIPIEQLTHLE--------NLEYLNLTKNSFEGEIPREIKTFPKL- 258
            L +L+L+ N         QL  L         NL  L+L+ N  +  +P  +  F KL 
Sbjct: 134 NLTYLNLAHN---------QLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEGV--FDKLT 181

Query: 259 --RHLKLGQNKLTGTIPDEI-GLLSNLEILEFHEN 290
             + L+L QN+L  ++PD +   L++L+ +  H+N
Sbjct: 182 QLKDLRLYQNQLK-SVPDGVFDRLTSLQYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 57.3 bits (139), Expect = 3e-09
 Identities = 49/198 (24%), Positives = 77/198 (38%), Gaps = 18/198 (9%)

Query: 428 SIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGI 487
             P      +  +K +L    +T     +   +  D             NN   K   GI
Sbjct: 12  IFPDDA--FAETIKANLKKKSVT-DAVTQNELNSIDQ---------IIANNSDIKSVQGI 59

Query: 488 CRGGNLIYLTANVNKLVG-PIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDL 546
               N+ YL    NKL      + L   T LT + L  N+L            +L+ + L
Sbjct: 60  QYLPNVRYLALGGNKLHDISALKEL---TNLTYLILTGNQLQSLPNGVFDKLTNLKELVL 116

Query: 547 GDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQ 606
            +NQL  +    + K TNL+   ++ N+++         LT L  LD+  NQL   +P  
Sbjct: 117 VENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQ-SLPEG 175

Query: 607 LF-RSSFLIRLNLRRNQL 623
           +F + + L  L L +NQL
Sbjct: 176 VFDKLTQLKDLRLYQNQL 193

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 55.0 bits (133), Expect = 2e-08
 Identities = 56/248 (22%), Positives = 86/248 (34%), Gaps = 59/248 (23%)

Query: 184 ASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNS 243
           A      L    +    +   E + +  +  +++ I     I+ L ++  L         
Sbjct: 19  AETIKANLKKKSVTDAVTQN-ELNSIDQIIANNSDIKSVQGIQYLPNVRYLA-------- 69

Query: 244 FEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGL---LSNLEILEFHENLFHGLIPSSL 300
                              LG NKL      +I     L+NL  L    N    L     
Sbjct: 70  -------------------LGGNKLH-----DISALKELTNLTYLILTGNQLQSLPNGVF 105

Query: 301 GNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSL-ASLRQISELGI 359
             L  L+ L L    L S          NLT+L L+ N L  SLP  +   L  ++EL +
Sbjct: 106 DKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDL 164

Query: 360 SNNQLSEIISLQLQMNDLSGKLPPEIGL---LPKLEYLYLFDNKFSGPIPQQI-GNLTNL 415
           S NQL                LP   G+   L +L+ L L+ N+    +P  +   LT+L
Sbjct: 165 SYNQLQS--------------LPE--GVFDKLTQLKDLRLYQNQLKS-VPDGVFDRLTSL 207

Query: 416 FDLQLANN 423
             + L +N
Sbjct: 208 QYIWLHDN 215

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 48.1 bits (115), Expect = 3e-06
 Identities = 53/232 (22%), Positives = 87/232 (37%), Gaps = 59/232 (25%)

Query: 328 ANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGL 387
           A      L   ++T     +   L  I ++  +N+ +  +                 I  
Sbjct: 19  AETIKANLKKKSVT-DAV-TQNELNSIDQIIANNSDIKSV---------------QGIQY 61

Query: 388 LPKLEYLYLFDNKFSGPIPQQIG---NLTNLFDLQLANNFFNGSIPSTI-GNLSSLVKLS 443
           LP + YL L  NK        I     LTNL  L L  N    S+P+ +   L++L +L 
Sbjct: 62  LPNVRYLALGGNKL-----HDISALKELTNLTYLILTGNQLQ-SLPNGVFDKLTNLKELV 115

Query: 444 LSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGIC-RGGNLIYLTANVNK 502
           L  NQL  +LP  + +         L  ++ ++N     LP G+  +  NL  L  + N+
Sbjct: 116 LVENQLQ-SLPDGVFDK-----LTNLTYLNLAHNQLQ-SLPKGVFDKLTNLTELDLSYNQ 168

Query: 503 LVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGV 554
           L   +PE +++       +L Q                L+ + L  NQL  V
Sbjct: 169 LQS-LPEGVFD-------KLTQ----------------LKDLRLYQNQLKSV 196

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 42.7 bits (101), Expect = 2e-04
 Identities = 33/150 (22%), Positives = 61/150 (40%), Gaps = 22/150 (14%)

Query: 307 QRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSE 366
            + NLK   + +    +     ++  +  + +++  S+   +  L  +  L +  N+L +
Sbjct: 22  IKANLKKKSV-TDAVTQNEL-NSIDQIIANNSDIK-SVQ-GIQYLPNVRYLALGGNKLHD 77

Query: 367 IISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFN 426
           I                 +  L  L YL L  N+           LTNL +L L  N   
Sbjct: 78  I---------------SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQ 122

Query: 427 GSIPSTIGN-LSSLVKLSLSSNQLTGTLPP 455
            S+P  + + L++L  L+L+ NQL  +LP 
Sbjct: 123 -SLPDGVFDKLTNLTYLNLAHNQLQ-SLPK 150

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A Length = 272

 Score = 41.5 bits (98), Expect = 4e-04
 Identities = 38/118 (32%), Positives = 57/118 (48%), Gaps = 14/118 (11%)

Query: 84  FSAFPNLTALNLNMNNLVGSIPAGIGNA-TKLILLDLSSNNLTNPIPPEI-GYLSDLRVL 141
           F    NL  L L  N L  S+P G+ +  T L  L+L+ N L + +P  +   L++L  L
Sbjct: 105 FDKLTNLKELVLVENQLQ-SLPDGVFDKLTNLTYLNLAHNQLQS-LPKGVFDKLTNLTEL 162

Query: 142 LLYNNSLTGQIPH----QLSNLQNAWLLRIGANYLED-PDPVKFKGMASLTDLWLDYN 194
            L  N L   +P     +L+ L++  L +   N L+  PD V F  + SL  +WL  N
Sbjct: 163 DLSYNQLQ-SLPEGVFDKLTQLKDLRLYQ---NQLKSVPDGV-FDRLTSLQYIWLHDN 215

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 61.9 bits (151), Expect = 2e-10
 Identities = 76/443 (17%), Positives = 143/443 (32%), Gaps = 82/443 (18%)

Query: 232 ENLEYLNLTKNSFEGE-IPREIKTFPKLRHLKLGQNKLTGT----IPDEIGLLSNLEILE 286
            +++ L++             +    + + ++L    LT      I   + +   L  L 
Sbjct: 3   LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELN 62

Query: 287 FHEN---------LFHGLIPSSLGNLRRLQRLNLKSAGLN----SSIPKELGFCANLTFL 333
              N         +  GL   S     ++Q+L+L++  L       +   L     L  L
Sbjct: 63  LRSNELGDVGVHCVLQGLQTPS----CKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQEL 118

Query: 334 ELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGK----LPPEIGLLP 389
            LS N L  +       L+ + E  +       +  LQL+   LS      L   +   P
Sbjct: 119 HLSDNLLGDA------GLQLLCEGLLDPQ--CRLEKLQLEYCSLSAASCEPLASVLRAKP 170

Query: 390 KLEYLYLFDNKFSGPIPQQIG-----NLTNLFDLQLANNFFN----GSIPSTIGNLSSLV 440
             + L + +N  +    + +      +   L  L+L +          +   + + +SL 
Sbjct: 171 DFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLR 230

Query: 441 KLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANV 500
           +L+L SN+L      E+         R LR +       +                    
Sbjct: 231 ELALGSNKLGDVGMAELCPGLLHPSSR-LRTLWIWECGIT-------------------- 269

Query: 501 NKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALG---IYPD--LQYIDLGDNQLSGV- 554
            K  G +   L     L  + L  N L  +    L    + P   L+ + +     +   
Sbjct: 270 AKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAAC 329

Query: 555 ---LTSNWGKCTNLSNFRISGNRIKGGIPAELG-----NLTYLQNLDIFDNQLTGK---- 602
               +S   +   L   +IS NR++     EL        + L+ L + D  ++      
Sbjct: 330 CSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSS 389

Query: 603 IPAQLFRSSFLIRLNLRRNQLSD 625
           + A L  +  L  L+L  N L D
Sbjct: 390 LAATLLANHSLRELDLSNNCLGD 412

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 57.7 bits (140), Expect = 6e-09
 Identities = 82/423 (19%), Positives = 129/423 (30%), Gaps = 93/423 (21%)

Query: 85  SAFPNLTALNLNMNNL----VGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSD--- 137
                   + L+   L       I + +     L  L+L SN L       +  +     
Sbjct: 25  PLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELG---DVGVHCVLQGLQ 81

Query: 138 -----LRVLLLYNNSLTGQ----IPHQLSNLQNAWLLRIGANYLEDPDPVKF-----KGM 183
                ++ L L N  LTG     +   L  L     L +  N L D              
Sbjct: 82  TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQ 141

Query: 184 ASLTDLWLDYNLL-----EKFPSFIAECSKLMFLDLSDNLIMGHIPIEQL-----THLEN 233
             L  L L+Y  L     E   S +        L +S+N I     +  L          
Sbjct: 142 CRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDI-NEAGVRVLCQGLKDSPCQ 200

Query: 234 LEYLNLTKNSFEGE----IPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHE 289
           LE L L       +    +   + +   LR L LG NKL        G+           
Sbjct: 201 LEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDV-----GMAE--------- 246

Query: 290 NLFHGLIPSSLGNLRRLQRLNLKSAGLN----SSIPKELGFCANLTFLELSINNLT--GS 343
                L P  L    RL+ L +   G+       + + L    +L  L L+ N L   G+
Sbjct: 247 -----LCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGA 301

Query: 344 LPLSLA---SLRQISELGISNNQLS----EIISLQLQMNDLSGKLPPEIGLLPKLEYLYL 396
             L         Q+  L + +   +       S  L  N               L  L +
Sbjct: 302 RLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQN-------------RFLLELQI 348

Query: 397 FDNKFSGPIPQQIG-----NLTNLFDLQLANNFFN----GSIPSTIGNLSSLVKLSLSSN 447
            +N+      +++        + L  L LA+   +     S+ +T+    SL +L LS+N
Sbjct: 349 SNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNN 408

Query: 448 QLT 450
            L 
Sbjct: 409 CLG 411

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I Length = 461

 Score = 53.8 bits (130), Expect = 1e-07
 Identities = 70/411 (17%), Positives = 126/411 (30%), Gaps = 80/411 (19%)

Query: 89  NLTALNLNMNNLVGSIPAGIGNA-TKLILLDLSSNNLTN----PIPPEIGYLSDLRVLLL 143
           ++ +L++    L  +  A +     +  ++ L    LT      I   +     L  L L
Sbjct: 4   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 63

Query: 144 YNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLL-----EK 198
            +N L     H +               L+ P          +  L L    L       
Sbjct: 64  RSNELGDVGVHCV------------LQGLQTPS-------CKIQKLSLQNCCLTGAGCGV 104

Query: 199 FPSFIAECSKLMFLDLSDNLI----MGHIPIEQLTHLENLEYLNLTKNSFEGE----IPR 250
             S +     L  L LSDNL+    +  +    L     LE L L   S        +  
Sbjct: 105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLAS 164

Query: 251 EIKTFPKLRHLKLGQNKLTGTIPDEI--GLLSN---LEILEFHENLFH----GLIPSSLG 301
            ++  P  + L +  N +       +  GL  +   LE L+             +   + 
Sbjct: 165 VLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVA 224

Query: 302 NLRRLQRLNL-----KSAGLNSSIPKELGFCANLTFLELSINNLT----GSLPLSLASLR 352
           +   L+ L L        G+    P  L   + L  L +    +T    G L   L +  
Sbjct: 225 SKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKE 284

Query: 353 QISELGISNNQLS----EIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSG----P 404
            + EL ++ N+L      ++   L                 +LE L++    F+      
Sbjct: 285 SLKELSLAGNELGDEGARLLCETLLEPG------------CQLESLWVKSCSFTAACCSH 332

Query: 405 IPQQIGNLTNLFDLQLANNFFNGSIPSTIG-----NLSSLVKLSLSSNQLT 450
               +     L +LQ++NN    +    +        S L  L L+   ++
Sbjct: 333 FSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVS 383

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 58.9 bits (143), Expect = 6e-10
 Identities = 28/134 (20%), Positives = 55/134 (41%), Gaps = 7/134 (5%)

Query: 184 ASLTDLWLDYNLLEKFPS--FIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTK 241
               +L L+ N      +     +  +L  ++ S+N I   I          +  + LT 
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKI-TDIEEGAFEGASGVNEILLTS 90

Query: 242 NSFEGEIPREI-KTFPKLRHLKLGQNKLTGTIPDEI-GLLSNLEILEFHENLFHGLIPSS 299
           N  E  +  ++ K    L+ L L  N++T  + ++    LS++ +L  ++N    + P +
Sbjct: 91  NRLE-NVQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQITTVAPGA 148

Query: 300 LGNLRRLQRLNLKS 313
              L  L  LNL +
Sbjct: 149 FDTLHSLSTLNLLA 162

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 38/160 (23%), Positives = 56/160 (35%), Gaps = 29/160 (18%)

Query: 88  PNLTALNLNMNNLVGSIPAGI-GNATKLILLDLSSNNLTNPIPPEI-GYLSDLRVLLLYN 145
                L LN N        GI     +L  ++ S+N +T+ I        S +  +LL +
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITD-IEEGAFEGASGVNEILLTS 90

Query: 146 NSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFI-A 204
           N L   + H++                       FKG+ SL  L L  N +    +    
Sbjct: 91  NRLEN-VQHKM-----------------------FKGLESLKTLMLRSNRITCVGNDSFI 126

Query: 205 ECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSF 244
             S +  L L DN I   +       L +L  LNL  N F
Sbjct: 127 GLSSVRLLSLYDNQI-TTVAPGAFDTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 51.6 bits (124), Expect = 2e-07
 Identities = 31/117 (26%), Positives = 54/117 (46%), Gaps = 12/117 (10%)

Query: 84  FSAFPNLTALNLNMNNLVGSIPAGI-GNATKLILLDLSSNNLTNPIPPEI-GYLSDLRVL 141
           F   P L  +N + N +   I  G    A+ +  + L+SN L N +  ++   L  L+ L
Sbjct: 53  FKKLPQLRKINFSNNKIT-DIEEGAFEGASGVNEILLTSNRLEN-VQHKMFKGLESLKTL 110

Query: 142 LLYNNSLTGQIPH----QLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYN 194
           +L +N +T  + +     LS+++   LL +  N +    P  F  + SL+ L L  N
Sbjct: 111 MLRSNRIT-CVGNDSFIGLSSVR---LLSLYDNQITTVAPGAFDTLHSLSTLNLLAN 163

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 25/147 (17%), Positives = 52/147 (35%), Gaps = 20/147 (13%)

Query: 307 QRLNLKSAGLNSSIPKELGFC--ANLTFLELSINNLTGSLPLSLASLRQISELGISNNQL 364
             L L +    + +     F     L  +  S N +T     +      ++E+ +++N+L
Sbjct: 35  AELRLNNNEF-TVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRL 93

Query: 365 SEIISLQLQMNDLSGKLPPEI-GLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANN 423
                           +  ++   L  L+ L L  N+ +         L+++  L L +N
Sbjct: 94  EN--------------VQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDN 139

Query: 424 FFNGSIP-STIGNLSSLVKLSLSSNQL 449
               ++       L SL  L+L +N  
Sbjct: 140 QIT-TVAPGAFDTLHSLSTLNLLANPF 165

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 47.7 bits (114), Expect = 3e-06
 Identities = 20/109 (18%), Positives = 43/109 (39%), Gaps = 5/109 (4%)

Query: 536 GIYPDLQYIDLGDNQLSGVL-TSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDI 594
            I      + L +N+ + +  T  + K   L     S N+I           + +  + +
Sbjct: 29  HIPQYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILL 88

Query: 595 FDNQLTGKIPAQLFRS-SFLIRLNLRRNQLSDKIPAEI-GKLSRLQYLD 641
             N+L   +  ++F+    L  L LR N+++  +  +    LS ++ L 
Sbjct: 89  TSNRLEN-VQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLS 135

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 46.6 bits (111), Expect = 6e-06
 Identities = 24/130 (18%), Positives = 54/130 (41%), Gaps = 7/130 (5%)

Query: 515 TGLTRVRLEQNRLDG-DITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGN 573
                +RL  N     + T      P L+ I+  +N+++ +    +   + ++   ++ N
Sbjct: 32  QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91

Query: 574 RIKGGIPAEL-GNLTYLQNLDIFDNQLTGKIPAQLFRS-SFLIRLNLRRNQLSDKIPAEI 631
           R++  +  ++   L  L+ L +  N++T  +    F   S +  L+L  NQ++  +    
Sbjct: 92  RLEN-VQHKMFKGLESLKTLMLRSNRIT-CVGNDSFIGLSSVRLLSLYDNQIT-TVAPGA 148

Query: 632 -GKLSRLQYL 640
              L  L  L
Sbjct: 149 FDTLHSLSTL 158

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens} Length = 220

 Score = 41.2 bits (97), Expect = 5e-04
 Identities = 19/91 (20%), Positives = 38/91 (41%), Gaps = 6/91 (6%)

Query: 370 LQLQMNDLSGKLPPEIGL--LPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNG 427
           L+L  N+ +  L        LP+L  +   +NK +          + + ++ L +N    
Sbjct: 37  LRLNNNEFT-VLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLE- 94

Query: 428 SIPSTI-GNLSSLVKLSLSSNQLTGTLPPEI 457
           ++   +   L SL  L L SN++T  +  + 
Sbjct: 95  NVQHKMFKGLESLKTLMLRSNRIT-CVGNDS 124

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 57.4 bits (139), Expect = 1e-09
 Identities = 36/159 (22%), Positives = 66/159 (41%), Gaps = 15/159 (9%)

Query: 113 KLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYL 172
           + + L      +   +   +  L   + L L  N++  +I   LS ++N  +L +G N +
Sbjct: 26  EKVELHGMIPPIEK-MDATLSTLKACKHLALSTNNIE-KISS-LSGMENLRILSLGRNLI 82

Query: 173 EDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLE 232
           +  + +      +L +LW+ YN +    S I +   L  L +S+N I     I++L  L+
Sbjct: 83  KKIENL-DAVADTLEELWISYNQIASL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAALD 140

Query: 233 NLEYLNLTKNSFEGEIPRE----------IKTFPKLRHL 261
            LE L L  N    +              +K  P L+ L
Sbjct: 141 KLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKL 179

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 50.1 bits (120), Expect = 3e-07
 Identities = 32/129 (24%), Positives = 51/129 (39%), Gaps = 7/129 (5%)

Query: 184 ASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNS 243
           A   +L      +EK  + ++       L LS N I     I  L+ +ENL  L+L +N 
Sbjct: 25  AEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIE---KISSLSGMENLRILSLGRNL 81

Query: 244 FEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIP-SSLGN 302
            + +I         L  L +  N++  ++   I  L NL +L    N          L  
Sbjct: 82  IK-KIENLDAVADTLEELWISYNQIA-SL-SGIEKLVNLRVLYMSNNKITNWGEIDKLAA 138

Query: 303 LRRLQRLNL 311
           L +L+ L L
Sbjct: 139 LDKLEDLLL 147

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 47.8 bits (114), Expect = 2e-06
 Identities = 30/160 (18%), Positives = 59/160 (36%), Gaps = 17/160 (10%)

Query: 493 LIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLS 552
            + L   +  +   +  +L        + L  N ++  I++ L    +L+ + LG N + 
Sbjct: 27  KVELHGMIPPIEK-MDATLSTLKACKHLALSTNNIE-KISS-LSGMENLRILSLGRNLIK 83

Query: 553 GVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTG-KIPAQLFRSS 611
             + +       L    IS N+I     + +  L  L+ L + +N++T      +L    
Sbjct: 84  -KIENLDAVADTLEELWISYNQIA--SLSGIEKLVNLRVLYMSNNKITNWGEIDKLAALD 140

Query: 612 FLIRLNLRRNQLSDKIPAE----------IGKLSRLQYLD 641
            L  L L  N L +               + +L  L+ LD
Sbjct: 141 KLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD 180

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A Length = 198

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 29/153 (18%), Positives = 51/153 (33%), Gaps = 18/153 (11%)

Query: 256 PKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAG 315
            +   L      +   +   +  L   + L    N    +  SSL  +  L+ L+L    
Sbjct: 25  AEKVELHGMIPPIEK-MDATLSTLKACKHLALSTNNIEKI--SSLSGMENLRILSLGRNL 81

Query: 316 LNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMN 375
           +   I         L  L +S N +  SL   +  L  +  L +SNN+++    +     
Sbjct: 82  I-KKIENLDAVADTLEELWISYNQIA-SLS-GIEKLVNLRVLYMSNNKITNWGEID---- 134

Query: 376 DLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQ 408
                   ++  L KLE L L  N       + 
Sbjct: 135 --------KLAALDKLEDLLLAGNPLYNDYKEN 159

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 57.4 bits (139), Expect = 2e-09
 Identities = 26/120 (21%), Positives = 47/120 (39%), Gaps = 6/120 (5%)

Query: 78  TLDGFDFSAFPNLTALNLNMNNLVGSIPAGI-GNATKLILLDLSSNNLTNPIPPEI-GYL 135
            +    FS +  L  ++L+ N +   +          L  L L  N +T  +P  +   L
Sbjct: 46  VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGNKITE-LPKSLFEGL 103

Query: 136 SDLRVLLLYNNSLTGQIPHQL-SNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYN 194
             L++LLL  N +   +      +L N  LL +  N L+      F  + ++  + L  N
Sbjct: 104 FSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 56.6 bits (137), Expect = 3e-09
 Identities = 34/143 (23%), Positives = 60/143 (41%), Gaps = 17/143 (11%)

Query: 318 SSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEI---------- 367
           + IP        +T + L  N +    P + +  +++  + +SNNQ+SE+          
Sbjct: 24  TEIPT--NLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRS 81

Query: 368 -ISLQLQMNDLSGKLPPEI-GLLPKLEYLYLFDNKFSGPIPQQI-GNLTNLFDLQLANNF 424
             SL L  N ++ +LP  +   L  L+ L L  NK +  +      +L NL  L L +N 
Sbjct: 82  LNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKINC-LRVDAFQDLHNLNLLSLYDNK 139

Query: 425 FNGSIPSTIGNLSSLVKLSLSSN 447
                  T   L ++  + L+ N
Sbjct: 140 LQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 36/164 (21%), Positives = 61/164 (37%), Gaps = 28/164 (17%)

Query: 266 NKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPK--- 322
             LT  IP    L   +  +   +N    + P +    ++L+R++L +  + S +     
Sbjct: 21  KGLT-EIP--TNLPETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQI-SELAPDAF 76

Query: 323 -ELGFCANLTFLELSINNLTGSLPLSL-ASLRQISELGISNNQLSEIISLQLQMNDLSGK 380
             L    +L  L L  N +T  LP SL   L  +  L ++ N+++               
Sbjct: 77  QGLR---SLNSLVLYGNKIT-ELPKSLFEGLFSLQLLLLNANKIN--------------C 118

Query: 381 LPPEI-GLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANN 423
           L  +    L  L  L L+DNK           L  +  + LA N
Sbjct: 119 LRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 52.7 bits (127), Expect = 7e-08
 Identities = 34/128 (26%), Positives = 57/128 (44%), Gaps = 4/128 (3%)

Query: 515 TGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNR 574
             +T +RLEQN +      A   Y  L+ IDL +NQ+S +    +    +L++  + GN+
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNK 91

Query: 575 IKGGIPAEL-GNLTYLQNLDIFDNQLTGKIPAQLFRS-SFLIRLNLRRNQLSDKIPAEIG 632
           I   +P  L   L  LQ L +  N++   +    F+    L  L+L  N+L         
Sbjct: 92  ITE-LPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFS 149

Query: 633 KLSRLQYL 640
            L  +Q +
Sbjct: 150 PLRAIQTM 157

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 51.6 bits (124), Expect = 1e-07
 Identities = 35/196 (17%), Positives = 61/196 (31%), Gaps = 55/196 (28%)

Query: 120 SSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVK 179
               LT  IP  +     +  + L  N++   IP              GA          
Sbjct: 19  RGKGLTE-IPTNL--PETITEIRLEQNTIK-VIPP-------------GA---------- 51

Query: 180 FKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNL 239
           F     L  + L  N +                          +  +    L +L  L L
Sbjct: 52  FSPYKKLRRIDLSNNQIS------------------------ELAPDAFQGLRSLNSLVL 87

Query: 240 TKNSFEGEIPREI-KTFPKLRHLKLGQNKLTGTIPDEI-GLLSNLEILEFHENLFHGLIP 297
             N    E+P+ + +    L+ L L  NK+   +  +    L NL +L  ++N    +  
Sbjct: 88  YGNKIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDAFQDLHNLNLLSLYDNKLQTIAK 145

Query: 298 SSLGNLRRLQRLNLKS 313
            +   LR +Q ++L  
Sbjct: 146 GTFSPLRAIQTMHLAQ 161

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 50.8 bits (122), Expect = 3e-07
 Identities = 31/157 (19%), Positives = 58/157 (36%), Gaps = 28/157 (17%)

Query: 184 ASLTDLWLDYNLLEKFPSFI-AECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKN 242
            ++T++ L+ N ++  P    +   KL  +DLS+N I   +  +    L +L  L L  N
Sbjct: 32  ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQIS-ELAPDAFQGLRSLNSLVLYGN 90

Query: 243 SFEGEIPREI-KTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLG 301
               E+P+ + +    L+ L L  NK+   +  +                F         
Sbjct: 91  KIT-ELPKSLFEGLFSLQLLLLNANKIN-CLRVDA---------------FQ-------- 125

Query: 302 NLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSIN 338
           +L  L  L+L    L +           +  + L+ N
Sbjct: 126 DLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQN 162

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A Length = 220

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 31/135 (22%), Positives = 53/135 (39%), Gaps = 12/135 (8%)

Query: 418 LQLANNFFNGSIPSTI-GNLSSLVKLSLSSNQLTGTLPPEIGNSKSDF-GPRFLRNVSFS 475
           ++L  N     IP         L ++ LS+NQ++  L P+       F G R L ++   
Sbjct: 37  IRLEQNTIK-VIPPGAFSPYKKLRRIDLSNNQIS-ELAPDA------FQGLRSLNSLVLY 88

Query: 476 YNNFSGKLPPGICRG-GNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNA 534
            N  + +LP  +  G  +L  L  N NK+     ++  +   L  + L  N+L       
Sbjct: 89  GNKIT-ELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGT 147

Query: 535 LGIYPDLQYIDLGDN 549
                 +Q + L  N
Sbjct: 148 FSPLRAIQTMHLAQN 162

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 55.4 bits (134), Expect = 4e-09
 Identities = 26/128 (20%), Positives = 45/128 (35%), Gaps = 8/128 (6%)

Query: 165 LRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIP 224
           +++ A  +E     ++       +L L    +    +  A   +   +D SDN I     
Sbjct: 2   VKLTAELIEQAA--QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEI---RK 56

Query: 225 IEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLT--GTIPDEIGLLSNL 282
           ++    L  L+ L +  N          +  P L  L L  N L   G + D +  L +L
Sbjct: 57  LDGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDL-DPLASLKSL 115

Query: 283 EILEFHEN 290
             L    N
Sbjct: 116 TYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 52.4 bits (126), Expect = 5e-08
 Identities = 27/137 (19%), Positives = 46/137 (33%), Gaps = 7/137 (5%)

Query: 509 ESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNF 568
               N      + L   ++   I N          ID  DN++  +    +     L   
Sbjct: 13  AQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTL 69

Query: 569 RISGNRIKGGIPAELGNLTYLQNLDIFDNQLTG-KIPAQLFRSSFLIRLNLRRNQLSDKI 627
            ++ NRI          L  L  L + +N L        L     L  L + RN +++K 
Sbjct: 70  LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKK 129

Query: 628 ---PAEIGKLSRLQYLD 641
                 I K+ +++ LD
Sbjct: 130 HYRLYVIYKVPQVRVLD 146

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 25/155 (16%), Positives = 48/155 (30%), Gaps = 32/155 (20%)

Query: 117 LDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPD 176
           + L++  +      +       R L L    +       + NL                 
Sbjct: 2   VKLTAELIEQA--AQYTNAVRDRELDLRGYKIP-----VIENLGAT-------------- 40

Query: 177 PVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEY 236
                 +     +    N + K         +L  L +++N I   I       L +L  
Sbjct: 41  ------LDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRIC-RIGEGLDQALPDLTE 92

Query: 237 LNLTKNSFE--GEIPREIKTFPKLRHLKLGQNKLT 269
           L LT NS    G++   + +   L +L + +N +T
Sbjct: 93  LILTNNSLVELGDL-DPLASLKSLTYLCILRNPVT 126

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 42.0 bits (99), Expect = 1e-04
 Identities = 29/188 (15%), Positives = 49/188 (26%), Gaps = 66/188 (35%)

Query: 212 LDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGT 271
           + L+  LI       Q T+      L+L        I     T  +   +    N++   
Sbjct: 2   VKLTAELIEQ---AAQYTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIR-- 55

Query: 272 IPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLT 331
                                       L     L+RL                      
Sbjct: 56  ---------------------------KLDGFPLLRRL---------------------K 67

Query: 332 FLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKL 391
            L ++ N +         +L  ++EL ++NN L E+  L              +  L  L
Sbjct: 68  TLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLD------------PLASLKSL 115

Query: 392 EYLYLFDN 399
            YL +  N
Sbjct: 116 TYLCILRN 123

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4 Length = 176

 Score = 41.2 bits (97), Expect = 3e-04
 Identities = 25/156 (16%), Positives = 48/156 (30%), Gaps = 20/156 (12%)

Query: 98  NNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLS 157
             L+        NA +   LDL    +   I      L     +   +N +  ++     
Sbjct: 6   AELIEQAA-QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIR-KLDG-FP 61

Query: 158 NLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFP--SFIAECSKLMFLDLS 215
            L+    L +  N +        + +  LT+L L  N L +      +A    L +L + 
Sbjct: 62  LLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 121

Query: 216 DNLIMGHIPIEQ--------LTHLENLEYLNLTKNS 243
            N      P+          +  +  +  L+  K  
Sbjct: 122 RN------PVTNKKHYRLYVIYKVPQVRVLDFQKVK 151

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 58.0 bits (140), Expect = 6e-09
 Identities = 52/379 (13%), Positives = 119/379 (31%), Gaps = 28/379 (7%)

Query: 88  PNLTALNLNMNNLVGSIPAGIG----NATKLILLDLSSNNLTNPIPPEIGYL----SDLR 139
             +  L +  ++        +     + T L +L+          P ++  +      L 
Sbjct: 164 RKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLV 223

Query: 140 VLLLYNNSLTGQ--IPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLE 197
            + + +  +          +NL+      +  +       +       L  L L Y    
Sbjct: 224 SVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN 283

Query: 198 KFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPK 257
           + P      +++  LDL   L+        +    NLE L       +  +    +   +
Sbjct: 284 EMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQ 343

Query: 258 LRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLN 317
           L+ L++ +      + DE GL+S   ++   +              + L+ + +  + + 
Sbjct: 344 LKRLRIERGADEQGMEDEEGLVSQRGLIALAQ------------GCQELEYMAVYVSDIT 391

Query: 318 SSIPKELGF-CANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMND 376
           +   + +G    NL    L    L     ++   L       +   +     +  L+   
Sbjct: 392 NESLESIGTYLKNLCDFRLV--LLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGG 449

Query: 377 LSGKLPPEIG-LLPKLEYLYLFDNKFSGPIPQQIG-NLTNLFDLQLANNFF-NGSIPSTI 433
           L+      IG   P + ++ L     S     +      NL  L++    F   +I + +
Sbjct: 450 LTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAV 509

Query: 434 GNLSSLVKLSLSSNQLTGT 452
             L SL  L +   + + T
Sbjct: 510 TKLPSLRYLWVQGYRASMT 528

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B* Length = 592

 Score = 49.6 bits (118), Expect = 2e-06
 Identities = 87/539 (16%), Positives = 163/539 (30%), Gaps = 103/539 (19%)

Query: 84  FSAFPNLTALNLN---MNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRV 140
              FPNL +L L       +   IP   G      + ++S+N        ++  +   R 
Sbjct: 69  SRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNL------RQLKSV-HFRR 121

Query: 141 LLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFP 200
           +++ +  L      +  +L+                 +K    +  T   L         
Sbjct: 122 MIVSDLDLDRLAKARADDLET----------------LKLDKCSGFTTDGLL-------- 157

Query: 201 SFIAECSKLMFLDLSDNLI--MGHIPIEQL-THLENLEYLNLTKNSFEGEIPREIKTF-- 255
           S +  C K+  L + ++         + +L  H  +LE LN     F    P++++T   
Sbjct: 158 SIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIAR 217

Query: 256 --PKLRHLKLGQNKLT--GTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNL 311
               L  +K+G  ++            L        +E++       +L   R+L RL L
Sbjct: 218 NCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFPRKLCRLGL 277

Query: 312 KSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLAS-LRQISEL----GISNNQLSE 366
              G  + +P    F A +  L+L    L      +L      +  L     I +  L  
Sbjct: 278 SYMG-PNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEV 336

Query: 367 IISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFN 426
           +                      +L+ L +        +  + G ++    + LA     
Sbjct: 337 LAQ-----------------YCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQ---- 375

Query: 427 GSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPG 486
                       L  +++  + +T      IG    +      R V              
Sbjct: 376 --------GCQELEYMAVYVSDITNESLESIGTYLKNL--CDFRLVLLDR---------- 415

Query: 487 ICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQN--RLDGDITNALGIY-PDLQY 543
                  + L   V  L       L  C  L R         L     + +G Y P++++
Sbjct: 416 -EERITDLPLDNGVRSL-------LIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRW 467

Query: 544 IDLGDNQLSGV-LTSNWGKCTNLSNFRISGNRI-KGGIPAELGNLTYLQNLDIFDNQLT 600
           + LG    S   L      C NL    + G    +  I A +  L  L+ L +   + +
Sbjct: 468 MLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRAS 526

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 55.5 bits (134), Expect = 9e-09
 Identities = 43/145 (29%), Positives = 59/145 (40%), Gaps = 20/145 (13%)

Query: 307 QRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSL-ASLRQISELGISNNQLS 365
           Q L L    +    P       NL  L L  N L  +LP+ +  SL Q++ L +  NQL+
Sbjct: 43  QILYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLT 101

Query: 366 EIISLQLQMNDLSGKLPPEI-GLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNF 424
                          LP  +   L  L+ L++  NK +  +P+ I  LT+L  L L  N 
Sbjct: 102 --------------VLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQ 146

Query: 425 FNGSIPSTI-GNLSSLVKLSLSSNQ 448
              SIP      LSSL    L  N 
Sbjct: 147 LK-SIPHGAFDRLSSLTHAYLFGNP 170

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 54.3 bits (131), Expect = 2e-08
 Identities = 39/143 (27%), Positives = 57/143 (39%), Gaps = 9/143 (6%)

Query: 103 SIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLT---GQIPHQLSNL 159
           S+PAGI    ++  L L  N +T   P     L +L+ L L +N L      +   L+ L
Sbjct: 33  SVPAGIPTNAQI--LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQL 90

Query: 160 QNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLI 219
               L   G N L       F  +  L +L++  N L + P  I   + L  L L  N +
Sbjct: 91  TVLDL---GTNQLTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQNQL 147

Query: 220 MGHIPIEQLTHLENLEYLNLTKN 242
              IP      L +L +  L  N
Sbjct: 148 KS-IPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 49.3 bits (118), Expect = 9e-07
 Identities = 35/113 (30%), Positives = 55/113 (48%), Gaps = 5/113 (4%)

Query: 84  FSAFPNLTALNLNMNNLVGSIPAGI-GNATKLILLDLSSNNLTNPIPPEI-GYLSDLRVL 141
           F +  NL  L L  N L  ++P G+  + T+L +LDL +N LT  +P  +   L  L+ L
Sbjct: 60  FDSLINLKELYLGSNQLG-ALPVGVFDSLTQLTVLDLGTNQLTV-LPSAVFDRLVHLKEL 117

Query: 142 LLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYN 194
            +  N LT  +P  +  L +   L +  N L+      F  ++SLT  +L  N
Sbjct: 118 FMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 48.5 bits (116), Expect = 2e-06
 Identities = 31/110 (28%), Positives = 53/110 (48%), Gaps = 9/110 (8%)

Query: 536 GIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIK---GGIPAELGNLTYLQNL 592
           GI  + Q + L DNQ++ +    +    NL    +  N++     G+   L  L     L
Sbjct: 37  GIPTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQL---TVL 93

Query: 593 DIFDNQLTGKIPAQLF-RSSFLIRLNLRRNQLSDKIPAEIGKLSRLQYLD 641
           D+  NQLT  +P+ +F R   L  L +  N+L+ ++P  I +L+ L +L 
Sbjct: 94  DLGTNQLT-VLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLA 141

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 45.5 bits (108), Expect = 2e-05
 Identities = 39/136 (28%), Positives = 57/136 (41%), Gaps = 21/136 (15%)

Query: 165 LRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFI-AECSKLMFLDLSDNLIMGHI 223
           L +  N +   +P  F  + +L +L+L  N L   P  +    ++L  LDL  N      
Sbjct: 45  LYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTN------ 98

Query: 224 PIEQLT--------HLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDE 275
              QLT         L +L+ L +  N    E+PR I+    L HL L QN+L  +IP  
Sbjct: 99  ---QLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLK-SIPHG 153

Query: 276 I-GLLSNLEILEFHEN 290
               LS+L       N
Sbjct: 154 AFDRLSSLTHAYLFGN 169

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus} Length = 229

 Score = 43.9 bits (104), Expect = 6e-05
 Identities = 37/134 (27%), Positives = 54/134 (40%), Gaps = 9/134 (6%)

Query: 418 LQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYN 477
           L L +N      P    +L +L +L L SNQL   LP  + +S +      L  +    N
Sbjct: 45  LYLHDNQITKLEPGVFDSLINLKELYLGSNQLG-ALPVGVFDSLTQ-----LTVLDLGTN 98

Query: 478 NFSGKLPPGIC-RGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALG 536
             +  LP  +  R  +L  L    NKL   +P  +   T LT + L+QN+L      A  
Sbjct: 99  QLT-VLPSAVFDRLVHLKELFMCCNKLTE-LPRGIERLTHLTHLALDQNQLKSIPHGAFD 156

Query: 537 IYPDLQYIDLGDNQ 550
               L +  L  N 
Sbjct: 157 RLSSLTHAYLFGNP 170

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 56.6 bits (137), Expect = 1e-08
 Identities = 59/357 (16%), Positives = 115/357 (32%), Gaps = 82/357 (22%)

Query: 306 LQRLNLKSAGLNS----SIPKELGFCANLTFLELSINNLT--GSLPLS--LASLRQISEL 357
           ++  +LK   + +    S+   L    ++  + LS N +    +  LS  +AS + +   
Sbjct: 6   IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIA 65

Query: 358 GISNNQLSEIISLQLQ-MNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLF 416
             S+     +     + +  L   L       PKL  + L DN F     + + +     
Sbjct: 66  EFSDIFTGRVKDEIPEALRLLLQALLK----CPKLHTVRLSDNAFGPTAQEPLIDF---- 117

Query: 417 DLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLT-------GTLPPEIGNSKSDFGPRFL 469
              L+ +             + L  L L +N L             E+  +K       L
Sbjct: 118 ---LSKH-------------TPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPL 161

Query: 470 RNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDG 529
           R++    N                       N  +    ++  +   L  V++ QN +  
Sbjct: 162 RSIICGRNRLE--------------------NGSMKEWAKTFQSHRLLHTVKMVQNGIRP 201

Query: 530 D-----ITNALGIYPDLQYIDLGDNQLSG----VLTSNWGKCTNLSNFRISGNRI--KGG 578
           +     +   L    +L+ +DL DN  +      L        NL    ++   +  +G 
Sbjct: 202 EGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGA 261

Query: 579 IP-----AELGNLTYLQNLDIFDNQLTGKIPAQLFRS-----SFLIRLNLRRNQLSD 625
                  ++L N+  LQ L +  N++       L          L+ L L  N+ S+
Sbjct: 262 AAVVDAFSKLENIG-LQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE 317

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 52.4 bits (126), Expect = 2e-07
 Identities = 52/333 (15%), Positives = 108/333 (32%), Gaps = 72/333 (21%)

Query: 117 LDLSSNNLTN----PIPPEIGYLSDLRVLLLYNNSLTGQ----IPHQLSNLQNAWLLRIG 168
             L  + +T      +   +     ++ ++L  N++  +    +   +++ ++  +    
Sbjct: 9   KSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFS 68

Query: 169 ANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLI--MGHIPIE 226
             +         + +  L                + +C KL  + LSDN        P+ 
Sbjct: 69  DIFTGRVKDEIPEALRLLLQA-------------LLKCPKLHTVRLSDNAFGPTAQEPLI 115

Query: 227 Q-LTHLENLEYLNLTKNSF-------------EGEIPREIKTFPKLRHLKLGQNKLTG-- 270
             L+    LE+L L  N               E  + ++ K  P LR +  G+N+L    
Sbjct: 116 DFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS 175

Query: 271 --TIPDEIGLLSNLEILEFHENLFH-----GLIPSSLGNLRRLQRLNLKSAGLN----SS 319
                        L  ++  +N         L+   L   + L+ L+L+         S+
Sbjct: 176 MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSA 235

Query: 320 IPKELGFCANLTFLELSINNLT--GSLPLSLA----SLRQISELGISNNQLS----EIIS 369
           +   L    NL  L L+   L+  G+  +  A        +  L +  N++       + 
Sbjct: 236 LAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLK 295

Query: 370 LQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFS 402
             +               +P L +L L  N+FS
Sbjct: 296 TVIDEK------------MPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 50.1 bits (120), Expect = 1e-06
 Identities = 45/319 (14%), Positives = 96/319 (30%), Gaps = 73/319 (22%)

Query: 88  PNLTALNLNMNNL----VGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLL 143
            ++  + L+ N +       +   I +   L + + S              L  L   LL
Sbjct: 32  DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALL 91

Query: 144 YNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFI 203
               L                +R+  N               L D             F+
Sbjct: 92  KCPKLHT--------------VRLSDNAFGP------TAQEPLID-------------FL 118

Query: 204 AECSKLMFLDLSDNLI------------MGHIPIEQLTHLENLEYLNLTKNSFEGE---- 247
           ++ + L  L L +N +                  ++  +   L  +   +N  E      
Sbjct: 119 SKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKE 178

Query: 248 IPREIKTFPKLRHLKLGQNKLT-----GTIPDEIGLLSNLEILEFHENLFHG----LIPS 298
             +  ++   L  +K+ QN +        + + +     L++L+  +N F       +  
Sbjct: 179 WAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI 238

Query: 299 SLGNLRRLQRLNLKSAGLNS----SIPKELGFCAN--LTFLELSINNLTGSLPLSLAS-- 350
           +L +   L+ L L    L++    ++        N  L  L L  N +      +L +  
Sbjct: 239 ALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI 298

Query: 351 ---LRQISELGISNNQLSE 366
              +  +  L ++ N+ SE
Sbjct: 299 DEKMPDLLFLELNGNRFSE 317

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 47.0 bits (112), Expect = 1e-05
 Identities = 55/328 (16%), Positives = 97/328 (29%), Gaps = 58/328 (17%)

Query: 296 IPSSLGNLRRLQRLNLKSAGLN----SSIPKELGFCANLTFLELSINNLTGSLPLSLASL 351
           + + L     ++ + L    +       + + +    +L   E S             +L
Sbjct: 24  VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEAL 83

Query: 352 RQISELGISNNQLSEIISLQLQMNDLSGK----LPPEIGLLPKLEYLYLFDNKFSGPIPQ 407
           R + +  +   +L     ++L  N         L   +     LE+LYL +N   GP   
Sbjct: 84  RLLLQALLKCPKLHT---VRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL-GPQAG 139

Query: 408 QIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPR 467
                       +A      ++     N   L  +    N+L      E   +      R
Sbjct: 140 AK----------IARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSH--R 187

Query: 468 FLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRL 527
            L  V    N      P GI                   + E L  C  L  + L+ N  
Sbjct: 188 LLHTVKMVQNGIR---PEGI----------------EHLLLEGLAYCQELKVLDLQDNTF 228

Query: 528 DGD----ITNALGIYPDLQYIDLGDNQLSGV----LTSNWGKCTN--LSNFRISGNRI-- 575
                  +  AL  +P+L+ + L D  LS      +   + K  N  L   R+  N I  
Sbjct: 229 THLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIEL 288

Query: 576 KGGIP---AELGNLTYLQNLDIFDNQLT 600
                        +  L  L++  N+ +
Sbjct: 289 DAVRTLKTVIDEKMPDLLFLELNGNRFS 316

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 46.2 bits (110), Expect = 2e-05
 Identities = 40/245 (16%), Positives = 71/245 (28%), Gaps = 44/245 (17%)

Query: 88  PNLTALNLNMNNL----VGSIPAGIGNATKLILLDLSSNNLT-------------NPIPP 130
           P L  + L+ N         +   +   T L  L L +N L                +  
Sbjct: 94  PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNK 153

Query: 131 EIGYLSDLRVLLLYNNSLTGQ----IPHQLSNLQNAWLLRIGANYLEDPDPVK-----FK 181
           +      LR ++   N L             + +    +++  N +              
Sbjct: 154 KAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLA 213

Query: 182 GMASLTDLWLDYNLL-----EKFPSFIAECSKLMFLDLSDNLI--MGHIPI-EQLTHLEN 233
               L  L L  N             +     L  L L+D L+   G   + +  + LEN
Sbjct: 214 YCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLEN 273

Query: 234 --LEYLNLTKNSFEGE----IPREIKT-FPKLRHLKLGQNKLTGTIPDEIGLLSNLEILE 286
             L+ L L  N  E +    +   I    P L  L+L  N+ +    ++  +    E+  
Sbjct: 274 IGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS---EEDDVVDEIREVFS 330

Query: 287 FHENL 291
                
Sbjct: 331 TRGRG 335

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A Length = 386

 Score = 44.3 bits (105), Expect = 7e-05
 Identities = 48/267 (17%), Positives = 81/267 (30%), Gaps = 57/267 (21%)

Query: 409 IGNLTNLFDLQLANNFFNG----SIPSTIGNLSSLVKLSLSSNQLTGT----LPPEIGNS 460
           +   + +    L  +        S+ + +    S+ ++ LS N +       L   I + 
Sbjct: 1   MARFS-IEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASK 59

Query: 461 KSDFGPRFLRNVSFSYNNFSGKLPPGICRGG-----------NLIYLTANVNKL----VG 505
           K       L    FS + F+G++   I                L  +  + N        
Sbjct: 60  KD------LEIAEFS-DIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPTAQE 112

Query: 506 PIPESLWNCTGLTRVRLEQNRL-------------DGDITNALGIYPDLQYIDLGDNQLS 552
           P+ + L   T L  + L  N L             +  +       P L+ I  G N+L 
Sbjct: 113 PLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE 172

Query: 553 GVLTSNWGK----CTNLSNFRISGNRI-----KGGIPAELGNLTYLQNLDIFDNQLTGK- 602
                 W K       L   ++  N I     +  +   L     L+ LD+ DN  T   
Sbjct: 173 NGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLG 232

Query: 603 ---IPAQLFRSSFLIRLNLRRNQLSDK 626
              +   L     L  L L    LS +
Sbjct: 233 SSALAIALKSWPNLRELGLNDCLLSAR 259

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 53.9 bits (130), Expect = 4e-08
 Identities = 51/211 (24%), Positives = 71/211 (33%), Gaps = 54/211 (25%)

Query: 103 SIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNA 162
           S+P+GI   T+   LDL S  L          L+ L  L L  N L              
Sbjct: 28  SVPSGIPADTEK--LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT------------ 73

Query: 163 WLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFI-AECSKLMFLDLSDNLIMG 221
             L  G           F  +  L  L L  N L   P  +    ++L  L L  N    
Sbjct: 74  --LSAGV----------FDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGN---- 117

Query: 222 HIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEI-GLLS 280
                QL  L +  +  LT                KL+ L+L  N+L  +IP      L+
Sbjct: 118 -----QLKSLPSGVFDRLT----------------KLKELRLNTNQLQ-SIPAGAFDKLT 155

Query: 281 NLEILEFHENLFHGLIPSSLGNLRRLQRLNL 311
           NL+ L    N    +   +   L +LQ + L
Sbjct: 156 NLQTLSLSTNQLQSVPHGAFDRLGKLQTITL 186

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 53.2 bits (128), Expect = 5e-08
 Identities = 42/158 (26%), Positives = 63/158 (39%), Gaps = 12/158 (7%)

Query: 91  TALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEI-GYLSDLRVLLLYNNSLT 149
             L+L    L     A     TKL  L+L  N L   +   +   L++L  L L NN L 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQT-LSAGVFDDLTELGTLGLANNQLA 96

Query: 150 ---GQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPS--FIA 204
                +   L+ L   +L   G N L+      F  +  L +L L+ N L+  P+  F  
Sbjct: 97  SLPLGVFDHLTQLDKLYL---GGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAF-D 152

Query: 205 ECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKN 242
           + + L  L LS N +   +P      L  L+ + L  N
Sbjct: 153 KLTNLQTLSLSTNQLQS-VPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 50.5 bits (121), Expect = 5e-07
 Identities = 42/159 (26%), Positives = 66/159 (41%), Gaps = 6/159 (3%)

Query: 484 PPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQY 543
           P GI      + L      L      +    T LT + L+ N+L            +L  
Sbjct: 30  PSGIPADTEKLDL--QSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGT 87

Query: 544 IDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAEL-GNLTYLQNLDIFDNQLTGK 602
           + L +NQL+ +    +   T L    + GN++K  +P+ +   LT L+ L +  NQL   
Sbjct: 88  LGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKELRLNTNQLQ-S 145

Query: 603 IPAQLFRS-SFLIRLNLRRNQLSDKIPAEIGKLSRLQYL 640
           IPA  F   + L  L+L  NQL         +L +LQ +
Sbjct: 146 IPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTI 184

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 50.5 bits (121), Expect = 5e-07
 Identities = 40/154 (25%), Positives = 52/154 (33%), Gaps = 19/154 (12%)

Query: 261 LKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNS-- 318
           L L    L          L+ L  L    N    L      +L  L  L L +  L S  
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLANNQLASLP 99

Query: 319 -SIPKELGFCANLTFLELSINNLTGSLPLSL-ASLRQISELGISNNQLSEI--------- 367
             +   L     L  L L  N L  SLP  +   L ++ EL ++ NQL  I         
Sbjct: 100 LGVFDHL---TQLDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT 155

Query: 368 --ISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDN 399
              +L L  N L          L KL+ + LF N
Sbjct: 156 NLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 50.1 bits (120), Expect = 6e-07
 Identities = 35/117 (29%), Positives = 50/117 (42%), Gaps = 12/117 (10%)

Query: 84  FSAFPNLTALNLNMNNLVGSIPAGI-GNATKLILLDLSSNNLTNPIPPEI-GYLSDLRVL 141
           F     L  L L  N L  S+P G+  + T+L  L L  N L + +P  +   L+ L+ L
Sbjct: 79  FDDLTELGTLGLANNQLA-SLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVFDRLTKLKEL 136

Query: 142 LLYNNSLTGQIPH----QLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYN 194
            L  N L   IP     +L+NLQ    L +  N L+      F  +  L  + L  N
Sbjct: 137 RLNTNQLQ-SIPAGAFDKLTNLQT---LSLSTNQLQSVPHGAFDRLGKLQTITLFGN 189

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 48.2 bits (115), Expect = 3e-06
 Identities = 42/162 (25%), Positives = 62/162 (38%), Gaps = 12/162 (7%)

Query: 392 EYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTI-GNLSSLVKLSLSSNQLT 450
           E L L     +         LT L  L L  N    ++ + +  +L+ L  L L++NQL 
Sbjct: 38  EKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTELGTLGLANNQLA 96

Query: 451 GTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRG-GNLIYLTANVNKLVGPIPE 509
            +LP  + +  +      L  +    N     LP G+      L  L  N N+L   IP 
Sbjct: 97  -SLPLGVFDHLTQ-----LDKLYLGGNQLK-SLPSGVFDRLTKLKELRLNTNQLQS-IPA 148

Query: 510 SLWNC-TGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQ 550
             ++  T L  + L  N+L      A      LQ I L  NQ
Sbjct: 149 GAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQ 190

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 43.5 bits (103), Expect = 1e-04
 Identities = 41/182 (22%), Positives = 65/182 (35%), Gaps = 32/182 (17%)

Query: 418 LQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYN 477
           L L +        +T   L+ L  L+L  NQL  TL   + +         L  +  + N
Sbjct: 40  LDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQ-TLSAGVFD-----DLTELGTLGLANN 93

Query: 478 NFSGKLPPGI-CRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALG 536
             +  LP G+      L  L    N+L   +P  ++    LT                  
Sbjct: 94  QLA-SLPLGVFDHLTQLDKLYLGGNQLKS-LPSGVF--DRLT------------------ 131

Query: 537 IYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFD 596
               L+ + L  NQL  +    + K TNL    +S N+++         L  LQ + +F 
Sbjct: 132 ---KLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFG 188

Query: 597 NQ 598
           NQ
Sbjct: 189 NQ 190

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A Length = 251

 Score = 40.8 bits (96), Expect = 7e-04
 Identities = 43/180 (23%), Positives = 59/180 (32%), Gaps = 39/180 (21%)

Query: 184 ASLTDLWLDYNLLEKFPSFI-AECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKN 242
           A    L L    L           +KL +L+L  N +   +       L  L  L L  N
Sbjct: 35  ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQL-QTLSAGVFDDLTELGTLGLANN 93

Query: 243 SFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGN 302
                         +L  L LG N+L  ++P                 +F  L       
Sbjct: 94  QLASLPLGVFDHLTQLDKLYLGGNQLK-SLP---------------SGVFDRLT------ 131

Query: 303 LRRLQRLNLKSAGLNSSIPK----ELGFCANLTFLELSINNLTGSLPL----SLASLRQI 354
             +L+ L L +  L  SIP     +L    NL  L LS N L  S+P      L  L+ I
Sbjct: 132 --KLKELRLNTNQL-QSIPAGAFDKLT---NLQTLSLSTNQLQ-SVPHGAFDRLGKLQTI 184

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 51.8 bits (124), Expect = 5e-07
 Identities = 58/416 (13%), Positives = 127/416 (30%), Gaps = 36/416 (8%)

Query: 201 SFIAECSKLMFLDLSDNLIMGHIPIEQL-THLENLEYLNLTKNSFEGEIPREIKTF---- 255
                      L LS         +  +     NL+ L+L ++  +      +  F    
Sbjct: 124 LIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTY 183

Query: 256 PKLRHLKLGQNKLTGTIPDEIGLLS---NLEILEFHENLFHGLIPSSLGNLRRLQRLNLK 312
             L  L +       +      L++   NL+ L+ +  +    + + L    +L+ L   
Sbjct: 184 TSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTG 243

Query: 313 S------AGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSE 366
                    + S +   L  C  L  L    + +   LP   +   +++ L +S   +  
Sbjct: 244 GYTAEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQS 303

Query: 367 IISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFN 426
              ++L            +   PKL+ L++ D      +        +L +L++  +   
Sbjct: 304 YDLVKL------------LCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSEPF 351

Query: 427 GSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPG 486
              P+       LV +S+   +L       +           L  ++ +  N + +    
Sbjct: 352 VMEPNVALTEQGLVSVSMGCPKLE-----SVLYFCRQMTNAALITIARNRPNMT-RFRLC 405

Query: 487 ICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDL 546
           I       YLT     L       + +C  L R+ L     D            ++ + +
Sbjct: 406 IIEPKAPDYLTLEP--LDIGFGAIVEHCKDLRRLSLSGLLTDKVFEYIGTYAKKMEMLSV 463

Query: 547 GDNQLSGV-LTSNWGKCTNLSNFRISGNRI-KGGIPAELGNLTYLQNLDIFDNQLT 600
                S + +      C +L    I         + A    L  +++L +    ++
Sbjct: 464 AFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVS 519

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B* Length = 594

 Score = 48.4 bits (115), Expect = 7e-06
 Identities = 65/482 (13%), Positives = 135/482 (28%), Gaps = 58/482 (12%)

Query: 178 VKFKGMASLTDLWLDYNLLEKFP-----SFIAECSKLMFLDLSDNLIMGHIPIEQLTHLE 232
           V+ KG     D  L  +    +      +  +  + L  + L   ++            +
Sbjct: 71  VELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFK 130

Query: 233 NLEYLNLTKNSF--EGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLS----NLEILE 286
           N + L L+         +     T   L+ L L ++ +       +        +L  L 
Sbjct: 131 NFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLN 190

Query: 287 F---HENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGS 343
                  +    +   +     L+ L L  A     +   L     L  L          
Sbjct: 191 ISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYT---- 246

Query: 344 LPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSG 403
              +       S L ++ +   E+  L    + +   LP    +  +L  L L       
Sbjct: 247 ---AEVRPDVYSGLSVALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQS 303

Query: 404 P-IPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKS 462
             + + +     L  L + +   +  +         L +L +  ++       E   + +
Sbjct: 304 YDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCKDLRELRVFPSE---PFVMEPNVALT 360

Query: 463 DFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLW-NCTGLTRVR 521
           + G   L +VS              C    L  +     ++      ++  N   +TR R
Sbjct: 361 EQG---LVSVSMG------------CP--KLESVLYFCRQMTNAALITIARNRPNMTRFR 403

Query: 522 LEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPA 581
           L                PD   ++  D     ++      C +L    +SG         
Sbjct: 404 L---------CIIEPKAPDYLTLEPLDIGFGAIVEH----CKDLRRLSLSGLLTDKVFEY 450

Query: 582 ELGNLTYLQNLDIFDNQLTGKIPAQLFRS-SFLIRLNLRRNQLSDK-IPAEIGKLSRLQY 639
                  ++ L +     +      +      L +L +R     DK + A   KL  ++ 
Sbjct: 451 IGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRS 510

Query: 640 LD 641
           L 
Sbjct: 511 LW 512

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 48.6 bits (116), Expect = 7e-07
 Identities = 30/111 (27%), Positives = 48/111 (43%), Gaps = 8/111 (7%)

Query: 184 ASLTDLWLD--YNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTK 241
           A++ +L LD   +   K     AE   L FL L +  ++    +  L  L  L+ L L++
Sbjct: 24  AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS---VSNLPKLPKLKKLELSE 80

Query: 242 NSFEGEIPREIKTFPKLRHLKLGQNKLT--GTIPDEIGLLSNLEILEFHEN 290
           N   G +    +  P L HL L  NKL    T+ + +  L  L+ L+    
Sbjct: 81  NRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTL-EPLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 44.3 bits (105), Expect = 2e-05
 Identities = 29/138 (21%), Positives = 47/138 (34%), Gaps = 8/138 (5%)

Query: 86  AFPNLTALNL-NMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLY 144
               +  L L N  +  G I         L  L L +  L + +   +  L  L+ L L 
Sbjct: 22  TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLIS-VSN-LPKLPKLKKLELS 79

Query: 145 NNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVK-FKGMASLTDLWLDYNLLEKFPSF- 202
            N + G +      L N   L +  N L+D   ++  K +  L  L L    +     + 
Sbjct: 80  ENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYR 139

Query: 203 ---IAECSKLMFLDLSDN 217
                   +L +LD  D 
Sbjct: 140 ESVFKLLPQLTYLDGYDR 157

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.8 bits (101), Expect = 7e-05
 Identities = 23/86 (26%), Positives = 35/86 (40%), Gaps = 3/86 (3%)

Query: 185 SLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSF 244
           +L  L L    L    +   +  KL  L+LS+N I           L NL +LNL+ N  
Sbjct: 50  NLEFLSLINVGLISVSNL-PKLPKLKKLELSENRI-FGGLDMLAEKLPNLTHLNLSGNKL 107

Query: 245 EG-EIPREIKTFPKLRHLKLGQNKLT 269
           +       +K    L+ L L   ++T
Sbjct: 108 KDISTLEPLKKLECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 42.4 bits (100), Expect = 9e-05
 Identities = 33/154 (21%), Positives = 56/154 (36%), Gaps = 24/154 (15%)

Query: 298 SSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISEL 357
           S    +   +R++L+      +  +EL        L+   +N  G +    A    +  L
Sbjct: 3   SGSSGMDMKRRIHLELRNRTPAAVREL-------VLDNCKSND-GKIEGLTAEFVNLEFL 54

Query: 358 GISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFD 417
            + N  L  + +L                 LPKL+ L L +N+  G +      L NL  
Sbjct: 55  SLINVGLISVSNLPK---------------LPKLKKLELSENRIFGGLDMLAEKLPNLTH 99

Query: 418 LQLANNFFNG-SIPSTIGNLSSLVKLSLSSNQLT 450
           L L+ N     S    +  L  L  L L + ++T
Sbjct: 100 LNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.9 bits (96), Expect = 3e-04
 Identities = 26/95 (27%), Positives = 46/95 (48%), Gaps = 3/95 (3%)

Query: 507 IPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLS 566
           I         L  + L    L   ++N L   P L+ ++L +N++ G L     K  NL+
Sbjct: 41  IEGLTAEFVNLEFLSLINVGLI-SVSN-LPKLPKLKKLELSENRIFGGLDMLAEKLPNLT 98

Query: 567 NFRISGNRIKG-GIPAELGNLTYLQNLDIFDNQLT 600
           +  +SGN++K       L  L  L++LD+F+ ++T
Sbjct: 99  HLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVT 133

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.5 bits (95), Expect = 4e-04
 Identities = 35/148 (23%), Positives = 51/148 (34%), Gaps = 39/148 (26%)

Query: 253 KTFPKLRHLKLGQNKLT-GTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNL 311
           +T   +R L L   K   G I        NLE L             S+ NL +L     
Sbjct: 21  RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGL-----ISVSNLPKLP---- 71

Query: 312 KSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQ 371
                             L  LELS N + G L +    L  ++ L +S N+L +I +L+
Sbjct: 72  -----------------KLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLE 114

Query: 372 LQMNDLSGKLPPEIGLLPKLEYLYLFDN 399
                        +  L  L+ L LF+ 
Sbjct: 115 ------------PLKKLECLKSLDLFNC 130

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A Length = 168

 Score = 40.1 bits (94), Expect = 5e-04
 Identities = 22/89 (24%), Positives = 37/89 (41%), Gaps = 8/89 (8%)

Query: 64  SISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNN 123
           ++  ++L N GL  ++        P L  L L+ N + G +         L  L+LS N 
Sbjct: 50  NLEFLSLINVGLI-SVSNL--PKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNK 106

Query: 124 LTNPIPPEIGYLSD---LRVLLLYNNSLT 149
           L +     +  L     L+ L L+N  +T
Sbjct: 107 LKD--ISTLEPLKKLECLKSLDLFNCEVT 133

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 47.7 bits (114), Expect = 1e-06
 Identities = 27/110 (24%), Positives = 44/110 (40%), Gaps = 6/110 (5%)

Query: 184 ASLTDLWLDYN--LLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTK 241
           + + +L LD +     K      E  +L FL   +  +     I  L  L  L+ L L+ 
Sbjct: 17  SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS---IANLPKLNKLKKLELSD 73

Query: 242 NSFEGEIPREIKTFPKLRHLKLGQNKLTG-TIPDEIGLLSNLEILEFHEN 290
           N   G +    +  P L HL L  NK+   +  + +  L NL+ L+    
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 42.4 bits (100), Expect = 7e-05
 Identities = 25/134 (18%), Positives = 52/134 (38%), Gaps = 8/134 (5%)

Query: 86  AFPNLTALNLNMN-NLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLY 144
              ++  L L+ + +  G +        +L  L   +  LT+ I   +  L+ L+ L L 
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTS-IAN-LPKLNKLKKLELS 72

Query: 145 NNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVK-FKGMASLTDLWLDYNLLEKFPSF- 202
           +N ++G +        N   L +  N ++D   ++  K + +L  L L    +     + 
Sbjct: 73  DNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYR 132

Query: 203 ---IAECSKLMFLD 213
                   +L +LD
Sbjct: 133 ENVFKLLPQLTYLD 146

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.6 bits (98), Expect = 2e-04
 Identities = 29/126 (23%), Positives = 46/126 (36%), Gaps = 17/126 (13%)

Query: 327 CANLTFLELSINNLT-GSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEI 385
            +++  L L  +    G L        ++  L   N  L+ I +L               
Sbjct: 16  PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIANLPK------------- 62

Query: 386 GLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNG-SIPSTIGNLSSLVKLSL 444
             L KL+ L L DN+ SG +        NL  L L+ N     S    +  L +L  L L
Sbjct: 63  --LNKLKKLELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDL 120

Query: 445 SSNQLT 450
            + ++T
Sbjct: 121 FNCEVT 126

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 41.2 bits (97), Expect = 2e-04
 Identities = 21/86 (24%), Positives = 34/86 (39%), Gaps = 3/86 (3%)

Query: 185 SLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSF 244
            L  L      L    + + + +KL  L+LSDN +             NL +LNL+ N  
Sbjct: 43  ELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRV-SGGLEVLAEKCPNLTHLNLSGNKI 100

Query: 245 EG-EIPREIKTFPKLRHLKLGQNKLT 269
           +       +K    L+ L L   ++T
Sbjct: 101 KDLSTIEPLKKLENLKSLDLFNCEVT 126

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 40.8 bits (96), Expect = 3e-04
 Identities = 26/122 (21%), Positives = 51/122 (41%), Gaps = 15/122 (12%)

Query: 279 LSNLEILEFHENLF-HGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSI 337
            S+++ L    +    G +         L+ L+  + GL +SI   L     L  LELS 
Sbjct: 16  PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGL-TSI-ANLPKLNKLKKLELSD 73

Query: 338 NNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLF 397
           N ++G L +       ++ L +S N++ ++ +++             +  L  L+ L LF
Sbjct: 74  NRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIE------------PLKKLENLKSLDLF 121

Query: 398 DN 399
           + 
Sbjct: 122 NC 123

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 39.7 bits (93), Expect = 6e-04
 Identities = 29/97 (29%), Positives = 46/97 (47%), Gaps = 3/97 (3%)

Query: 505 GPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTN 564
           G +         L  +      L   I N L     L+ ++L DN++SG L     KC N
Sbjct: 32  GKLEGLTDEFEELEFLSTINVGLT-SIAN-LPKLNKLKKLELSDNRVSGGLEVLAEKCPN 89

Query: 565 LSNFRISGNRIKG-GIPAELGNLTYLQNLDIFDNQLT 600
           L++  +SGN+IK       L  L  L++LD+F+ ++T
Sbjct: 90  LTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVT 126

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A Length = 149

 Score = 39.3 bits (92), Expect = 7e-04
 Identities = 24/111 (21%), Positives = 38/111 (34%), Gaps = 9/111 (8%)

Query: 205 ECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKN---SFEGEIPREIKTFPKLRHL 261
             S +  L L ++              E LE+L+       S        +    KL+ L
Sbjct: 15  TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSIAN-----LPKLNKLKKL 69

Query: 262 KLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGL-IPSSLGNLRRLQRLNL 311
           +L  N+++G +        NL  L    N    L     L  L  L+ L+L
Sbjct: 70  ELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDL 120

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.7 bits (118), Expect = 1e-06
 Identities = 20/110 (18%), Positives = 38/110 (34%), Gaps = 7/110 (6%)

Query: 187 TDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEG 246
           + L    +        +     L  L + +   + H+ +  L  L  L  L + K+    
Sbjct: 11  SGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR- 69

Query: 247 EIPREIKTF---PKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFH 293
            +  +   F   P+L  L L  N L  ++  +     +L+ L    N  H
Sbjct: 70  FVAPD--AFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 48.6 bits (115), Expect = 3e-06
 Identities = 22/102 (21%), Positives = 33/102 (32%), Gaps = 2/102 (1%)

Query: 117 LDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIP-HQLSNLQNAWLLRIGANYLEDP 175
           L  + +   +     +    +L  L + N      +    L  L     L I  + L   
Sbjct: 13  LRCTRDGALD-SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV 71

Query: 176 DPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDN 217
            P  F     L+ L L +N LE       +   L  L LS N
Sbjct: 72  APDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGN 113

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 46.7 bits (110), Expect = 1e-05
 Identities = 24/101 (23%), Positives = 35/101 (34%), Gaps = 4/101 (3%)

Query: 266 NKLTGTIPDEIGLLSNLEILEF-HENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKE- 323
                     +    NL  L   ++     L    L  L  L+ L +  +GL   +  + 
Sbjct: 17  RDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL-RFVAPDA 75

Query: 324 LGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQL 364
             F   L+ L LS N L  SL         + EL +S N L
Sbjct: 76  FHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPL 115

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.9 bits (108), Expect = 2e-05
 Identities = 21/109 (19%), Positives = 34/109 (31%), Gaps = 15/109 (13%)

Query: 319 SIPKELGFCANLTFLELSINNLTGSLPL-SLASLRQISELGISNNQLSEIISLQLQMNDL 377
                L    NLT L +        L L  L  L ++  L I  + L  +       +  
Sbjct: 22  DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV-----APDAF 76

Query: 378 SGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFN 426
                      P+L  L L  N     +  +     +L +L L+ N  +
Sbjct: 77  HF--------TPRLSRLNLSFNALES-LSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 45.9 bits (108), Expect = 2e-05
 Identities = 21/112 (18%), Positives = 40/112 (35%), Gaps = 16/112 (14%)

Query: 52  CNW-NGIQCNEVGSIS------------EINLANSGLDGTLDGFDFSAFPNLTALNLNMN 98
            +  +G++C   G++             E+ + N      L+  D      L  L +  +
Sbjct: 7   PHGSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKS 66

Query: 99  NLVGSIPAGI-GNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLT 149
            L   +         +L  L+LS N L + +  +      L+ L+L  N L 
Sbjct: 67  GLR-FVAPDAFHFTPRLSRLNLSFNALES-LSWKTVQGLSLQELVLSGNPLH 116

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 44.3 bits (104), Expect = 7e-05
 Identities = 21/80 (26%), Positives = 30/80 (37%), Gaps = 4/80 (5%)

Query: 563 TNLSNFRISGNRIKGGIPAE-LGNLTYLQNLDIFDNQLTGKIPAQLFRS-SFLIRLNLRR 620
            NL+   I   +    +    L  L  L+NL I  + L   +    F     L RLNL  
Sbjct: 31  ENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFHFTPRLSRLNLSF 89

Query: 621 NQLSDKIPAEIGKLSRLQYL 640
           N L   +  +  +   LQ L
Sbjct: 90  NALE-SLSWKTVQGLSLQEL 108

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 41.3 bits (96), Expect = 6e-04
 Identities = 18/101 (17%), Positives = 35/101 (34%), Gaps = 8/101 (7%)

Query: 405 IPQQIGNLTNLFDLQLANNFFNGSIPS-TIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSD 463
               +    NL +L + N      +    +  L  L  L++  + L   + P+  +    
Sbjct: 23  SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLR-FVAPDAFH---- 77

Query: 464 FGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLV 504
                L  ++ S+N     L     +G +L  L  + N L 
Sbjct: 78  -FTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLH 116

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 9/88 (10%)

Query: 84  FSAFPNLTALNLNMNNLVGSIPAGI-GNATKLILLDLSSNNLTNPIPPEI-GYLSDLRVL 141
           F   P+L  L L  N L   I       A+ +  L L  N +   I  ++   L  L+ L
Sbjct: 50  FGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENKIKE-ISNKMFLGLHQLKTL 107

Query: 142 LLYNNSLTGQIPH----QLSNLQNAWLL 165
            LY+N ++  +       L++L +  L 
Sbjct: 108 NLYDNQISC-VMPGSFEHLNSLTSLNLA 134

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 40.8 bits (96), Expect = 4e-04
 Identities = 30/122 (24%), Positives = 48/122 (39%), Gaps = 22/122 (18%)

Query: 307 QRLNLKSAGLNSSIPKELGF--CANLTFLELSINNLTGSLPLSL-ASLRQISELGISNNQ 363
             L L    L   I  +  F    +L  LEL  N LT  +  +       I EL +  N+
Sbjct: 32  TELLLNDNEL-GRISSDGLFGRLPHLVKLELKRNQLT-GIEPNAFEGASHIQELQLGENK 89

Query: 364 LSEIISLQLQMNDLSGKLPPEI-GLLPKLEYLYLFDNKFSGPIPQQI-GNLTNLFDLQLA 421
           + E              +  ++   L +L+ L L+DN+ S  +      +L +L  L LA
Sbjct: 90  IKE--------------ISNKMFLGLHQLKTLNLYDNQISC-VMPGSFEHLNSLTSLNLA 134

Query: 422 NN 423
           +N
Sbjct: 135 SN 136

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 40.8 bits (96), Expect = 5e-04
 Identities = 36/145 (24%), Positives = 53/145 (36%), Gaps = 31/145 (21%)

Query: 103 SIPAGIGNATKLILLDLSSNNLTNPIPPE--IGYLSDLRVLLLYNNSLTGQIPHQLSNLQ 160
            IP  I   T    L L+ N L   I  +   G L  L  L L  N        QL+ + 
Sbjct: 22  EIPRDIPLHTTE--LLLNDNELGR-ISSDGLFGRLPHLVKLELKRN--------QLTGI- 69

Query: 161 NAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFI-AECSKLMFLDLSDNLI 219
                              F+G + + +L L  N +++  + +     +L  L+L DN I
Sbjct: 70  --------------EPNA-FEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQI 114

Query: 220 MGHIPIEQLTHLENLEYLNLTKNSF 244
              +      HL +L  LNL  N F
Sbjct: 115 SC-VMPGSFEHLNSLTSLNLASNPF 138

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7 Length = 192

 Score = 40.0 bits (94), Expect = 8e-04
 Identities = 22/91 (24%), Positives = 42/91 (46%), Gaps = 3/91 (3%)

Query: 536 GIYPDLQYIDLGDNQLSGV-LTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDI 594
            I      + L DN+L  +     +G+  +L    +  N++ G  P      +++Q L +
Sbjct: 26  DIPLHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQL 85

Query: 595 FDNQLTGKIPAQLFRS-SFLIRLNLRRNQLS 624
            +N++  +I  ++F     L  LNL  NQ+S
Sbjct: 86  GENKIK-EISNKMFLGLHQLKTLNLYDNQIS 115

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 48.1 bits (115), Expect = 2e-06
 Identities = 41/146 (28%), Positives = 60/146 (41%), Gaps = 21/146 (14%)

Query: 307 QRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSL-ASLRQISELGISNNQLS 365
             L+L++  L S          +LT L L  N L  SLP  +   L  ++ L +S NQL 
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQ 89

Query: 366 EIISLQLQMNDLSGKLPPEI-GLLPKLEYLYLFDNKFSGPIPQQI-GNLTNLFDLQLANN 423
                          LP  +   L +L+ L L  N+    +P  +   LT L DL+L  N
Sbjct: 90  --------------SLPNGVFDKLTQLKELALNTNQLQS-LPDGVFDKLTQLKDLRLYQN 134

Query: 424 FFNGSIPSTI-GNLSSLVKLSLSSNQ 448
               S+P  +   L+SL  + L  N 
Sbjct: 135 QLK-SVPDGVFDRLTSLQYIWLHDNP 159

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 47.4 bits (113), Expect = 3e-06
 Identities = 38/144 (26%), Positives = 62/144 (43%), Gaps = 10/144 (6%)

Query: 103 SIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLT---GQIPHQLSNL 159
           S+P GI   T    LDL +N+L +        L+ L  L L  N L      + ++L++L
Sbjct: 21  SVPTGIPAQTTY--LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSL 78

Query: 160 QNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFI-AECSKLMFLDLSDNL 218
               L     N L+      F  +  L +L L+ N L+  P  +  + ++L  L L  N 
Sbjct: 79  TYLNL---STNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ 135

Query: 219 IMGHIPIEQLTHLENLEYLNLTKN 242
           +   +P      L +L+Y+ L  N
Sbjct: 136 LKS-VPDGVFDRLTSLQYIWLHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 44.3 bits (105), Expect = 3e-05
 Identities = 31/108 (28%), Positives = 52/108 (48%), Gaps = 4/108 (3%)

Query: 536 GIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIF 595
           GI     Y+DL  N L  +    + + T+L+   + GN+++         LT L  L++ 
Sbjct: 25  GIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS 84

Query: 596 DNQLTGKIPAQLF-RSSFLIRLNLRRNQLSDKIPAEI-GKLSRLQYLD 641
            NQL   +P  +F + + L  L L  NQL   +P  +  KL++L+ L 
Sbjct: 85  TNQLQ-SLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLR 130

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 44.3 bits (105), Expect = 4e-05
 Identities = 30/107 (28%), Positives = 48/107 (44%), Gaps = 2/107 (1%)

Query: 518 TRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKG 577
           T + LE N L             L  + LG N+L  +    + K T+L+   +S N+++ 
Sbjct: 31  TYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQS 90

Query: 578 GIPAELGNLTYLQNLDIFDNQLTGKIPAQLF-RSSFLIRLNLRRNQL 623
                   LT L+ L +  NQL   +P  +F + + L  L L +NQL
Sbjct: 91  LPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQL 136

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 43.1 bits (102), Expect = 9e-05
 Identities = 41/124 (33%), Positives = 61/124 (49%), Gaps = 14/124 (11%)

Query: 78  TLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNA-TKLILLDLSSNNLTNPIPPEI-GYL 135
           +L    F    +LT L L  N L  S+P G+ N  T L  L+LS+N L + +P  +   L
Sbjct: 42  SLPNGVFDELTSLTQLYLGGNKLQ-SLPNGVFNKLTSLTYLNLSTNQLQS-LPNGVFDKL 99

Query: 136 SDLRVLLLYNNSLTGQIPH----QLSNLQNAWLLRIGANYLED-PDPVKFKGMASLTDLW 190
           + L+ L L  N L   +P     +L+ L++  L +   N L+  PD V F  + SL  +W
Sbjct: 100 TQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQ---NQLKSVPDGV-FDRLTSLQYIW 154

Query: 191 LDYN 194
           L  N
Sbjct: 155 LHDN 158

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri} Length = 208

 Score = 41.2 bits (97), Expect = 4e-04
 Identities = 37/137 (27%), Positives = 64/137 (46%), Gaps = 22/137 (16%)

Query: 165 LRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFI-AECSKLMFLDLSDNLIMGHI 223
           L +  N L+      F  + SLT L+L  N L+  P+ +  + + L +L+LS N      
Sbjct: 33  LDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTN------ 86

Query: 224 PIEQLT--------HLENLEYLNLTKNSFEGEIPREI-KTFPKLRHLKLGQNKLTGTIPD 274
              QL          L  L+ L L  N  +  +P  +     +L+ L+L QN+L  ++PD
Sbjct: 87  ---QLQSLPNGVFDKLTQLKELALNTNQLQ-SLPDGVFDKLTQLKDLRLYQNQLK-SVPD 141

Query: 275 EI-GLLSNLEILEFHEN 290
            +   L++L+ +  H+N
Sbjct: 142 GVFDRLTSLQYIWLHDN 158

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 47.3 bits (113), Expect = 3e-06
 Identities = 30/120 (25%), Positives = 50/120 (41%), Gaps = 20/120 (16%)

Query: 307 QRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSL-ASLRQISELGISNNQLS 365
             L L      + +PKEL    +LT ++LS N ++ +L     +++ Q+  L +S N+L 
Sbjct: 34  TELYLDGNQF-TLVPKELSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLR 91

Query: 366 EIISLQLQMNDLSGKLPPEI-GLLPKLEYLYLFDNKFSGPIPQQI-GNLTNLFDLQLANN 423
                          +PP     L  L  L L  N  S  +P+    +L+ L  L +  N
Sbjct: 92  C--------------IPPRTFDGLKSLRLLSLHGNDISV-VPEGAFNDLSALSHLAIGAN 136

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 46.1 bits (110), Expect = 8e-06
 Identities = 33/136 (24%), Positives = 58/136 (42%), Gaps = 26/136 (19%)

Query: 319 SIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLS 378
            +PK  G   ++T L L  N  T  +P  L++ + ++ + +SNN++S             
Sbjct: 24  VLPK--GIPRDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRIS------------- 67

Query: 379 GKLPPEIGL---LPKLEYLYLFDNKFSGPIPQQI-GNLTNLFDLQLANNFFNGSIPSTI- 433
             L         + +L  L L  N+    IP +    L +L  L L  N  +  +P    
Sbjct: 68  -TLSN--QSFSNMTQLLTLILSYNRLRC-IPPRTFDGLKSLRLLSLHGNDIS-VVPEGAF 122

Query: 434 GNLSSLVKLSLSSNQL 449
            +LS+L  L++ +N L
Sbjct: 123 NDLSALSHLAIGANPL 138

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 45.4 bits (108), Expect = 1e-05
 Identities = 26/87 (29%), Positives = 43/87 (49%), Gaps = 9/87 (10%)

Query: 84  FSAFPNLTALNLNMNNLVGSIPAGI-GNATKLILLDLSSNNLTNPIPPEI-GYLSDLRVL 141
            S + +LT ++L+ N +  ++      N T+L+ L LS N L   IPP     L  LR+L
Sbjct: 50  LSNYKHLTLIDLSNNRIS-TLSNQSFSNMTQLLTLILSYNRLRC-IPPRTFDGLKSLRLL 107

Query: 142 LLYNNSLTGQIPH----QLSNLQNAWL 164
            L+ N ++  +P      LS L +  +
Sbjct: 108 SLHGNDIS-VVPEGAFNDLSALSHLAI 133

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens} Length = 193

 Score = 42.7 bits (101), Expect = 1e-04
 Identities = 24/92 (26%), Positives = 41/92 (44%), Gaps = 4/92 (4%)

Query: 184 ASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNS 243
             +T+L+LD N     P  ++    L  +DLS+N I   +  +  +++  L  L L+ N 
Sbjct: 31  RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRI-STLSNQSFSNMTQLLTLILSYNR 89

Query: 244 FEGEIPREI-KTFPKLRHLKLGQNKLTGTIPD 274
               IP         LR L L  N ++  +P+
Sbjct: 90  LR-CIPPRTFDGLKSLRLLSLHGNDIS-VVPE 119

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 43.4 bits (103), Expect = 4e-05
 Identities = 42/136 (30%), Positives = 60/136 (44%), Gaps = 25/136 (18%)

Query: 318 SSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDL 377
           +S+P   G  ++ T LEL  N L          L Q+++L +S NQ+             
Sbjct: 20  TSVPT--GIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ------------ 65

Query: 378 SGKLPPEIGL---LPKLEYLYLFDNKFSGPIPQQI-GNLTNLFDLQLANNFFNGSIPSTI 433
              LP   G+   L KL  LYL +NK    +P  +   LT L +L L  N    S+P  I
Sbjct: 66  --SLPD--GVFDKLTKLTILYLHENKLQS-LPNGVFDKLTQLKELALDTNQLK-SVPDGI 119

Query: 434 -GNLSSLVKLSLSSNQ 448
              L+SL K+ L +N 
Sbjct: 120 FDRLTSLQKIWLHTNP 135

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri} Length = 177

 Score = 41.1 bits (97), Expect = 3e-04
 Identities = 29/87 (33%), Positives = 45/87 (51%), Gaps = 9/87 (10%)

Query: 84  FSAFPNLTALNLNMNNLVGSIPAGIGNA-TKLILLDLSSNNLTNPIPPEI-GYLSDLRVL 141
           F     LT L+L+ N +  S+P G+ +  TKL +L L  N L + +P  +   L+ L+ L
Sbjct: 48  FDKLTQLTKLSLSQNQIQ-SLPDGVFDKLTKLTILYLHENKLQS-LPNGVFDKLTQLKEL 105

Query: 142 LLYNNSLTGQIPH----QLSNLQNAWL 164
            L  N L   +P     +L++LQ  WL
Sbjct: 106 ALDTNQLKS-VPDGIFDRLTSLQKIWL 131

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 44.2 bits (103), Expect = 8e-05
 Identities = 16/100 (16%), Positives = 37/100 (37%), Gaps = 7/100 (7%)

Query: 66  SEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNA---TKLILLDLSSN 122
            E    +  ++     F    FPNL  L +        +      +    +L  +D+S+ 
Sbjct: 230 VEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAG 289

Query: 123 NLTN----PIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSN 158
            LT+     +   +  +  L+ + +  N L+ ++  +L  
Sbjct: 290 VLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis} Length = 362

 Score = 41.1 bits (95), Expect = 9e-04
 Identities = 26/155 (16%), Positives = 50/155 (32%), Gaps = 16/155 (10%)

Query: 340 LTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIG--LLPKLEYLYLF 397
           L     L+   ++  + L I       + SL++    L   +  +I    LP LE L L+
Sbjct: 168 LDAMPLLNNLKIKGTNNLSIGKKPRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY 227

Query: 398 ---DNKFSGPIPQQI------GNLTNLFDLQLANNFFNGSIPSTIGN---LSSLVKLSLS 445
              ++                    NL  L + +      +         L  L  + +S
Sbjct: 228 VGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDIS 287

Query: 446 SNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFS 480
           +  LT      + +       + L+ ++  YN  S
Sbjct: 288 AGVLTDEGARLLLDHVDKI--KHLKFINMKYNYLS 320

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp} Length = 362

 Score = 41.2 bits (97), Expect = 7e-04
 Identities = 56/343 (16%), Positives = 112/343 (32%), Gaps = 61/343 (17%)

Query: 93  LNLNMNNLVGS--IPAGIGNATKLILLDLSSNNLTNPIPPEIGYL-----SDLRVLLLYN 145
           +N  +    GS  +         +  LDLS NNL +    E+        + +  L L  
Sbjct: 1   MNYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSG 60

Query: 146 NSLTGQ--------IPHQLSNLQNAWLLRIGANYLEDPDPVKFKGM-----ASLTDLWLD 192
           NSL  +        +    +N+ +   L +  N+L      +          ++T L L 
Sbjct: 61  NSLGFKNSDELVQILAAIPANVTS---LNLSGNFLSYKSSDELVKTLAAIPFTITVLDLG 117

Query: 193 YNLLEK------FPSFIAECSKLMFLDLSDNLIMGHIPIEQL-----THLENLEYLNLTK 241
           +N            +F    + +  L+L  N + G    ++L         N+  LNL  
Sbjct: 118 WNDFSSKSSSEFKQAFSNLPASITSLNLRGNDL-GIKSSDELIQILAAIPANVNSLNLRG 176

Query: 242 NSFEGE----IPREIKTFPK-LRHLKLGQNKLT--GTIPDEIGLLSN---LEILEFHENL 291
           N+   +    + + + + P  +  L L  N L             S    +  L    N 
Sbjct: 177 NNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNC 236

Query: 292 FHG----LIPSSLGNLRRLQRLNLKSAGLNS-------SIPKELGFCANLTFLELSINNL 340
            HG     +     +L+ LQ + L    + +       ++         +  ++ +   +
Sbjct: 237 LHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEI 296

Query: 341 TGSLPLSLASLRQ-----ISELGISNNQLSEIISLQLQMNDLS 378
             S  + +++L +          + N  L      Q  + DL+
Sbjct: 297 HPSHSIPISNLIRELSGKADVPSLLNQCLIFAQKHQTNIEDLN 339

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	641
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
3rgz_A	768	Protein brassinosteroid insensitive 1; phytohormon	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
1ziw_A	680	TOLL-like receptor 3; innate immunity, immune syst	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3t6q_A	606	CD180 antigen; protein-protein complex, leucine ri	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3vq2_A	606	TLR4, TOLL-like receptor 4; leucine rich repeat MD	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
3j0a_A	844	TOLL-like receptor 5; membrane protein, leucine-ri	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z63_A	570	TOLL-like receptor 4, variable lymphocyte recepto;	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z81_A	549	CD282 antigen, TOLL-like receptor 2, variable lymp	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4eco_A	636	Uncharacterized protein; leucine-rich repeats, pro	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
2z7x_B	520	TOLL-like receptor 1, variable lymphocyte recepto;	100.0
4g8a_A	635	TOLL-like receptor 4; leucine rich repeat MD-2 rel	100.0
4ecn_A	876	Leucine-rich repeat protein; leucine-rich repeats,	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
3a79_B	562	TLR6, VLRB.59, TOLL-like receptor 6, variable lymp	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
3v47_A	455	TOLL-like receptor 5B and variable lymphocyte REC	100.0
1jl5_A	454	Outer protein YOPM; leucine-rich repeat, molecular	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
3bz5_A	457	Internalin-J, INLJ; leucine rich repeat (LRR), cys	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
1o6v_A	466	Internalin A; bacterial infection, extracellular r	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
3o6n_A	390	APL1; leucine-rich repeat, protein binding; HET: N	100.0
4fmz_A	347	Internalin; leucine rich repeat, structural genomi	100.0
1ogq_A	313	PGIP-2, polygalacturonase inhibiting protein; inhi	100.0
3oja_B	597	Anopheles plasmodium-responsive leucine-rich REPE	100.0
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1z7x_W	461	Ribonuclease inhibitor; leucine-rich repeat, enzym	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
2ft3_A	332	Biglycan; proteoglycan, dimer interface, structura	99.97
1xku_A	330	Decorin; proteoglycan, leucine-rich repeat, struct	99.97
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
3ogk_B	592	Coronatine-insensitive protein 1; leucine rich rep	99.96
4fcg_A	328	Uncharacterized protein; structural genomics, PSI-	99.96
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
2z66_A	306	Variable lymphocyte receptor B, TOLL-like recepto;	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
2z80_A	353	TOLL-like receptor 2, variable lymphocyte recepto;	99.95
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.94
1ozn_A	285	Reticulon 4 receptor; NOGO receptor, MAD, myelinat	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.94
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.94
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.94
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.94
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
3o53_A	317	Protein LRIM1, AGAP006348-PA; leucine-rich repeat,	99.93
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.93
1wwl_A	312	Monocyte differentiation antigen CD14; LPS, immune	99.93
2p1m_B	594	Transport inhibitor response 1 protein; F-BOX, leu	99.93
3g06_A	622	SSPH2 (leucine-rich repeat protein); E3 ubiquitin	99.93
3oja_A	487	Leucine-rich immune molecule 1; coiled-coil, helix	99.92
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.91
2z62_A	276	TOLL-like receptor 4, variable lymphocyte recepto;	99.91
2o6q_A	270	Variable lymphocyte receptor A; leucine-rich repea	99.9
3rfs_A	272	Internalin B, repeat modules, variable lymphocyte	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.89
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.89
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.89
1p9a_G	290	Platelet glycoprotein IB alpha chain precursor; pl	99.88
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.88
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.88
3goz_A	362	Leucine-rich repeat-containing protein; LEGL7, NES	99.88
2ast_B	336	S-phase kinase-associated protein 2; SCF-substrate	99.88
2ca6_A	386	RAN GTPase-activating protein 1; GAP, GTPase activ	99.87
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.87
3m19_A	251	Variable lymphocyte receptor A diversity region; a	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
2xwt_C	239	Thyrotropin receptor; signaling protein-immune sys	99.86
4glp_A	310	Monocyte differentiation antigen CD14; alpha beta	99.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
1h6u_A	308	Internalin H; cell adhesion, leucine rich repeat,	99.85
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.84
2o6s_A	208	Variable lymphocyte receptor B; leucine-rich repea	99.83
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.82
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.81
3cvr_A	571	Invasion plasmid antigen; leucine rich repeat and	99.81
4ay9_X	350	Follicle-stimulating hormone receptor; hormone-rec	99.79
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.78
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.77
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.77
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.76
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.76
2v70_A	220	SLIT-2, SLIT homolog 2 protein N-product; neurogen	99.76
1h6t_A	291	Internalin B; cell adhesion, leucine rich repeat,	99.76
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.75
2v9t_B	220	SLIT homolog 2 protein N-product; structural prote	99.74
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.74
1m9s_A	605	Internalin B; cell invasion, GW domains, SH3 domai	99.74
3e6j_A	229	Variable lymphocyte receptor diversity region; var	99.73
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.72
1dce_A	567	Protein (RAB geranylgeranyltransferase alpha subun	99.72
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.71
4ezg_A	197	Putative uncharacterized protein; internalin-A, le	99.71
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.69
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.67
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.67
1xeu_A	263	Internalin C; cellular invasion, leucine-rich repe	99.67
4b8c_D	727	Glucose-repressible alcohol dehydrogenase transcr	99.66
1w8a_A	192	SLIT protein; signaling protein, secreted protein,	99.65
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.64
2ell_A	168	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.63
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.62
2je0_A	149	Acidic leucine-rich nuclear phosphoprotein 32 FAM	99.61
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.6
3sb4_A	329	Hypothetical leucine rich repeat protein; LRR, rig	99.59
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.59
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.58
2o6r_A	177	Variable lymphocyte receptor B; leucine-rich repea	99.57
2wfh_A	193	SLIT homolog 2 protein C-product; developmental pr	99.56
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.54
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.53
4fdw_A	401	Leucine rich hypothetical protein; putative cell s	99.5
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.48
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.48
4fs7_A	394	Uncharacterized protein; leucine-rich repeats, pro	99.48
1a9n_A	176	U2A', U2A'; complex (nuclear protein/RNA), RNA, sn	99.48
1ds9_A	198	Outer arm dynein; leucine-rich repeat, beta-BETA-a	99.45
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.4
3g39_A	170	Variable lymphocyte receptor VLRB.2D; antibody, X-	99.39
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.36
2r9u_A	174	Variable lymphocyte receptor; adaptive immunity, V	99.35
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.29
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.28
3un9_A	372	NLR family member X1; leucine rich repeat (LRR), a	99.26
4gt6_A	394	Cell surface protein; leucine rich repeats, putati	99.25
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.12
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.1
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.97
4h09_A	379	Hypothetical leucine rich repeat protein; two LRR_	98.9
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.86
2ra8_A	362	Uncharacterized protein Q64V53_bacfr; WGR domain,	98.82
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.57
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.5
1io0_A	185	Tropomodulin; LRR protein, right-handed super-heli	98.44
3rw6_A	267	Nuclear RNA export factor 1; retroviral constituti	98.34
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.12
3e4g_A	176	ATP synthase subunit S, mitochondrial; leucine-ric	98.1
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.4
1pgv_A	197	TMD-1, tropomodulin TMD-1; structural genomics, PS	97.11
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.31
3rfe_A	130	Platelet glycoprotein IB beta chain; platelet surf	96.03

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=2.1e-80  Score=698.08  Aligned_cols=601  Identities=31%  Similarity=0.483  Sum_probs=514.9

Q ss_pred             HhhcCcHHHHHHHHHHHhcCCCCC-CCCCCCCCCCCCCccccceeeCCCCCEEEEEcCCCCCccc---cCC---------
Q 036117           15 VVQISAQKEAKALLNWKSSLVSSS-LPSWTAINSNSGPCNWNGIQCNEVGSISEINLANSGLDGT---LDG---------   81 (641)
Q Consensus        15 ~~~~~~~~~~~~l~~~~~~~~~~~-~~~W~~~~~~~~~c~~~gv~c~~~~~v~~l~l~~~~~~~~---~~~---------   81 (641)
                      +.+++.++|+.||++||+++.++. +++|...   +|||.|.||.|+ .++|++|+|+++++.|.   ++.         
T Consensus         5 ~~~~~~~~~~~all~~k~~~~~~~~l~~W~~~---~~~C~w~gv~C~-~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L~   80 (768)
T 3rgz_A            5 SPSQSLYREIHQLISFKDVLPDKNLLPDWSSN---KNPCTFDGVTCR-DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGLE   80 (768)
T ss_dssp             ---CCHHHHHHHHHHHHTTCSCTTSSTTCCTT---SCGGGSTTEEEE-TTEEEEEECTTSCCCEEHHHHHHHTTTCTTCC
T ss_pred             ccccCCHHHHHHHHHHHhhCCCcccccCCCCC---CCCcCCcceEEC-CCcEEEEECCCCCcCCccCccChhHhccCccc
Confidence            444567889999999999997554 8899754   689999999998 78999999999999886   431         


Q ss_pred             -------------cCCCCCCCCCEEECCCCCCCccCch--hccCCCCCCEEECCCCcCCCCCcccc-CCCCCCCEEEccc
Q 036117           82 -------------FDFSAFPNLTALNLNMNNLVGSIPA--GIGNATKLILLDLSSNNLTNPIPPEI-GYLSDLRVLLLYN  145 (641)
Q Consensus        82 -------------~~~~~l~~L~~L~L~~n~~~~~~~~--~l~~l~~L~~L~L~~n~l~~~~p~~l-~~l~~L~~L~l~~  145 (641)
                                   ..++.+++|++|+|++|.+.+.+|.  .++++++|++|++++|.+.+..|..+ .++++|++|++++
T Consensus        81 ~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~  160 (768)
T 3rgz_A           81 SLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSA  160 (768)
T ss_dssp             EEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCS
T ss_pred             ccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCC
Confidence                         3577788888888888888877777  78888888888888888887777665 7788888888888


Q ss_pred             ccCCCCCChh---ccCCCCCcEEEeccccCCCCCCcccCCCCCCCEEEcCCCCCCCCchhhcCCCCCcEEEeeCCcCCCC
Q 036117          146 NSLTGQIPHQ---LSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGH  222 (641)
Q Consensus       146 n~~~~~~~~~---l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~  222 (641)
                      |.+++..|..   +.++++|++|++++|.+.+..+  +..+++|++|++++|.+...+..+.++++|++|++++|.+.+.
T Consensus       161 n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~~  238 (768)
T 3rgz_A          161 NSISGANVVGWVLSDGCGELKHLAISGNKISGDVD--VSRCVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSGD  238 (768)
T ss_dssp             SCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCB--CTTCTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCSC
T ss_pred             CccCCcCChhhhhhccCCCCCEEECCCCcccccCC--cccCCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCCc
Confidence            8888777766   7788888888888888776544  3778889999999888855433488888999999999888866


Q ss_pred             CChhhhcCCCCCcEEeccCCcccccCCcccCCCCCCCEEEcCCCcCCccCCcccCCC-CcccEeeeecccccccCccccC
Q 036117          223 IPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLL-SNLEILEFHENLFHGLIPSSLG  301 (641)
Q Consensus       223 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~-~~L~~L~l~~n~~~~~~~~~l~  301 (641)
                      ++. .+..+++|++|++++|.+.+.+|..  .+++|++|++++|.+.+.+|..+... ++|++|++++|.+.+.+|..+.
T Consensus       239 ~~~-~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~  315 (768)
T 3rgz_A          239 FSR-AISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFG  315 (768)
T ss_dssp             HHH-HTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGG
T ss_pred             ccH-HHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHh
Confidence            554 4588889999999999888777664  78889999999998888888877664 8899999999999888888899


Q ss_pred             CCCCCCeeeccCccCCCCCCcC-CCCCCCCCEEEccCccccccCchhhhcCC-CCCeEeCCccccc-------------c
Q 036117          302 NLRRLQRLNLKSAGLNSSIPKE-LGFCANLTFLELSINNLTGSLPLSLASLR-QISELGISNNQLS-------------E  366 (641)
Q Consensus       302 ~l~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~n~l~~~~~~~l~~~~-~L~~L~l~~n~~~-------------~  366 (641)
                      .+++|++|++++|.+.+.+|.. +..+++|++|++++|++++.+|..+..++ +|+.|++++|.+.             .
T Consensus       316 ~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~  395 (768)
T 3rgz_A          316 SCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNT  395 (768)
T ss_dssp             GCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCC
T ss_pred             cCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCC
Confidence            9999999999999888777765 78889999999999999888888888887 8999999988753             5


Q ss_pred             cceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccC
Q 036117          367 IISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSS  446 (641)
Q Consensus       367 l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~  446 (641)
                      ++.+++++|.+.+.+|..++.+++|++|++++|++++.+|..+..+++|+.|++++|.+.+.+|..+..+++|++|++++
T Consensus       396 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~  475 (768)
T 3rgz_A          396 LQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF  475 (768)
T ss_dssp             CCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred             ccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecC
Confidence            88899999999999999999999999999999999988999999999999999999999988999999999999999999


Q ss_pred             CcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCc
Q 036117          447 NQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNR  526 (641)
Q Consensus       447 n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~  526 (641)
                      |.+++.+|..+..++      +|++|++++|++++.+|.++..+++|++|++++|++.+.+|..+.++++|++|++++|+
T Consensus       476 N~l~~~~p~~l~~l~------~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~  549 (768)
T 3rgz_A          476 NDLTGEIPSGLSNCT------NLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL  549 (768)
T ss_dssp             SCCCSCCCGGGGGCT------TCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred             CcccCcCCHHHhcCC------CCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence            999999999888888      89999999999999999999999999999999999999999999999999999999998


Q ss_pred             CccccCcc----------------------------------------------------------------------cC
Q 036117          527 LDGDITNA----------------------------------------------------------------------LG  536 (641)
Q Consensus       527 l~~~~~~~----------------------------------------------------------------------~~  536 (641)
                      +.|.+|..                                                                      ++
T Consensus       550 l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~  629 (768)
T 3rgz_A          550 FNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFD  629 (768)
T ss_dssp             EESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCS
T ss_pred             cCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhh
Confidence            88766643                                                                      33


Q ss_pred             CCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCccccCCCCCCEE
Q 036117          537 IYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRL  616 (641)
Q Consensus       537 ~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~~~L~~l  616 (641)
                      .+++|+.||+++|+++|.+|..+++++.|+.|+|++|+++|.+|..++++++|++|||++|+++|.+|..+..+++|++|
T Consensus       630 ~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L  709 (768)
T 3rgz_A          630 NNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEI  709 (768)
T ss_dssp             SSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEE
T ss_pred             ccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEE
Confidence            45678899999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             eCcCCCCcccCccc
Q 036117          617 NLRRNQLSDKIPAE  630 (641)
Q Consensus       617 ~l~~n~l~~~~p~~  630 (641)
                      ++++|+++|.||..
T Consensus       710 ~ls~N~l~g~iP~~  723 (768)
T 3rgz_A          710 DLSNNNLSGPIPEM  723 (768)
T ss_dssp             ECCSSEEEEECCSS
T ss_pred             ECcCCcccccCCCc
Confidence            99999999999964

>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*

Probab=100.00  E-value=8.3e-70  Score=611.86  Aligned_cols=551  Identities=31%  Similarity=0.457  Sum_probs=493.7

Q ss_pred             CCCEEEEEcCCCCCccccCCc--CCCCCCCCCEEECCCCCCCccCchhc-cCCCCCCEEECCCCcCCCCCccc---cCCC
Q 036117           62 VGSISEINLANSGLDGTLDGF--DFSAFPNLTALNLNMNNLVGSIPAGI-GNATKLILLDLSSNNLTNPIPPE---IGYL  135 (641)
Q Consensus        62 ~~~v~~l~l~~~~~~~~~~~~--~~~~l~~L~~L~L~~n~~~~~~~~~l-~~l~~L~~L~L~~n~l~~~~p~~---l~~l  135 (641)
                      ..++++|+|++|.+.|.++ .  .++++++|++|++++|.+.+..|..+ .++++|++|++++|.+++..|..   ++++
T Consensus        99 l~~L~~L~Ls~n~l~~~~~-~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l  177 (768)
T 3rgz_A           99 SASLTSLDLSRNSLSGPVT-TLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGC  177 (768)
T ss_dssp             CTTCCEEECCSSEEEEEGG-GGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCC
T ss_pred             CCCCCEEECCCCcCCCcCC-ChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccC
Confidence            3678999999999998887 5  78999999999999999988877765 78999999999999999888877   7899


Q ss_pred             CCCCEEEcccccCCCCCChhccCCCCCcEEEeccccCCCCCCcccCCCCCCCEEEcCCCCCC-CCchhhcCCCCCcEEEe
Q 036117          136 SDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLE-KFPSFIAECSKLMFLDL  214 (641)
Q Consensus       136 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~-~l~~~l~~~~~L~~L~l  214 (641)
                      ++|++|++++|.+++..+.  .++++|++|++++|.+.+..+. +..+++|++|++++|.+. .+|..+..+++|++|++
T Consensus       178 ~~L~~L~Ls~n~l~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l~~l~~L~~L~L  254 (768)
T 3rgz_A          178 GELKHLAISGNKISGDVDV--SRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAISTCTELKLLNI  254 (768)
T ss_dssp             TTCCEEECCSSEEESCCBC--TTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHTTTCSSCCEEEC
T ss_pred             CCCCEEECCCCcccccCCc--ccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHHhcCCCCCEEEC
Confidence            9999999999999876654  7899999999999999887776 999999999999999994 67888999999999999


Q ss_pred             eCCcCCCCCChhhhcCCCCCcEEeccCCcccccCCcccCCC-CCCCEEEcCCCcCCccCCcccCCCCcccEeeeeccccc
Q 036117          215 SDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTF-PKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFH  293 (641)
Q Consensus       215 ~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l-~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~  293 (641)
                      ++|.+.+.++..   .+++|++|++++|.+++.+|..+... ++|++|++++|.+.+.+|..++.+++|++|++++|.+.
T Consensus       255 s~n~l~~~~~~~---~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~  331 (768)
T 3rgz_A          255 SSNQFVGPIPPL---PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFS  331 (768)
T ss_dssp             CSSCCEESCCCC---CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred             CCCcccCccCcc---ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCccc
Confidence            999998777653   78999999999999998889888765 99999999999999999999999999999999999998


Q ss_pred             ccCccc-cCCCCCCCeeeccCccCCCCCCcCCCCCC-CCCEEEccCccccccCchhhhc--CCCCCeEeCCccccc----
Q 036117          294 GLIPSS-LGNLRRLQRLNLKSAGLNSSIPKELGFCA-NLTFLELSINNLTGSLPLSLAS--LRQISELGISNNQLS----  365 (641)
Q Consensus       294 ~~~~~~-l~~l~~L~~L~l~~~~~~~~~~~~l~~~~-~L~~L~l~~n~l~~~~~~~l~~--~~~L~~L~l~~n~~~----  365 (641)
                      +.+|.. +..+++|++|++++|.+.+.+|..+..++ +|++|++++|++++.+|..+..  +++|++|++++|.++    
T Consensus       332 ~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p  411 (768)
T 3rgz_A          332 GELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIP  411 (768)
T ss_dssp             EECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECC
T ss_pred             CcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccC
Confidence            777765 88999999999999999888888888877 9999999999999988888776  789999999999765    


Q ss_pred             -------ccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCC
Q 036117          366 -------EIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSS  438 (641)
Q Consensus       366 -------~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~  438 (641)
                             .++.+++++|.+.+.+|..++.+++|++|++++|++.+.+|..+..+++|++|++++|.+.+.+|..+..+++
T Consensus       412 ~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~  491 (768)
T 3rgz_A          412 PTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTN  491 (768)
T ss_dssp             GGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTT
T ss_pred             HHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCC
Confidence                   6788999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCcccc-------
Q 036117          439 LVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESL-------  511 (641)
Q Consensus       439 L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l-------  511 (641)
                      |++|++++|.+++.+|.+++.++      +|++|++++|++++.+|..+..+++|+.|++++|++.|.+|..+       
T Consensus       492 L~~L~L~~N~l~~~~p~~~~~l~------~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~  565 (768)
T 3rgz_A          492 LNWISLSNNRLTGEIPKWIGRLE------NLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKI  565 (768)
T ss_dssp             CCEEECCSSCCCSCCCGGGGGCT------TCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCB
T ss_pred             CCEEEccCCccCCcCChHHhcCC------CCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchh
Confidence            99999999999999999999888      89999999999999999999999999999999999988777543       


Q ss_pred             ---------------------------------------------------------------ccCCCCcEEECCCCcCc
Q 036117          512 ---------------------------------------------------------------WNCTGLTRVRLEQNRLD  528 (641)
Q Consensus       512 ---------------------------------------------------------------~~~~~L~~L~l~~n~l~  528 (641)
                                                                                     ..+++|+.|++++|+++
T Consensus       566 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~  645 (768)
T 3rgz_A          566 AANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLS  645 (768)
T ss_dssp             CCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCB
T ss_pred             hhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCccc
Confidence                                                                           23467899999999999


Q ss_pred             cccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCcccc
Q 036117          529 GDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLF  608 (641)
Q Consensus       529 ~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~  608 (641)
                      |.+|..++.++.|+.|+|++|+++|.+|..++++++|++|+|++|+++|.+|..++++++|++|+|++|+++|.||.. .
T Consensus       646 g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~  724 (768)
T 3rgz_A          646 GYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-G  724 (768)
T ss_dssp             SCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-S
T ss_pred             ccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-h
Confidence            999999999999999999999999999999999999999999999999999999999999999999999999999964 4


Q ss_pred             CCCCCCEEeCcCCC-Cccc
Q 036117          609 RSSFLIRLNLRRNQ-LSDK  626 (641)
Q Consensus       609 ~~~~L~~l~l~~n~-l~~~  626 (641)
                      .+.++....+.+|+ ++|.
T Consensus       725 ~~~~~~~~~~~gN~~Lcg~  743 (768)
T 3rgz_A          725 QFETFPPAKFLNNPGLCGY  743 (768)
T ss_dssp             SGGGSCGGGGCSCTEEEST
T ss_pred             hhccCCHHHhcCCchhcCC
Confidence            45556666777775 6663

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=2e-58  Score=515.12  Aligned_cols=547  Identities=20%  Similarity=0.196  Sum_probs=427.7

Q ss_pred             CCEEEEEcCCCCCccccCCcCCCCCCCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEE
Q 036117           63 GSISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLL  142 (641)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  142 (641)
                      .++++|+++++.+.+..+ ..|.++++|++|++++|.+.+..|..++++++|++|++++|.+++..+..|+++++|++|+
T Consensus        25 ~~l~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~  103 (680)
T 1ziw_A           25 TNITVLNLTHNQLRRLPA-ANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELH  103 (680)
T ss_dssp             TTCSEEECCSSCCCCCCG-GGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEE
T ss_pred             CCCcEEECCCCCCCCcCH-HHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEE
Confidence            589999999999986544 6799999999999999999988899999999999999999999965555799999999999


Q ss_pred             cccccCCCCCChhccCCCCCcEEEeccccCCCCCCcccCCCCCCCEEEcCCCCCCCCchh-h--cCCCCCcEEEeeCCcC
Q 036117          143 LYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSF-I--AECSKLMFLDLSDNLI  219 (641)
Q Consensus       143 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~-l--~~~~~L~~L~l~~~~~  219 (641)
                      +++|.+++..|..|.++++|++|++++|.+.+..+..+.++++|++|++++|.+..++.. +  ..+++|++|++++|.+
T Consensus       104 L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l  183 (680)
T 1ziw_A          104 LMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQI  183 (680)
T ss_dssp             CCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCC
T ss_pred             CCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcc
Confidence            999999988788999999999999999999999899999999999999999999777643 3  3568999999999998


Q ss_pred             CCCCChhhhcCC---------------------------CCCcEEeccCCcccccCCcccCCCCC--CCEEEcCCCcCCc
Q 036117          220 MGHIPIEQLTHL---------------------------ENLEYLNLTKNSFEGEIPREIKTFPK--LRHLKLGQNKLTG  270 (641)
Q Consensus       220 ~~~~~~~~l~~l---------------------------~~L~~L~l~~n~~~~~~~~~l~~l~~--L~~L~L~~~~l~~  270 (641)
                      .+..+ ..+..+                           ++|++|++++|.+.+..+..+..++.  |++|++++|.+.+
T Consensus       184 ~~~~~-~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~  262 (680)
T 1ziw_A          184 KEFSP-GCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNV  262 (680)
T ss_dssp             CCBCT-TGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCE
T ss_pred             cccCh-hhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCc
Confidence            85443 333444                           45566666666666666666655543  7777777777666


Q ss_pred             cCCcccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCccCCC-----CCCc----CCCCCCCCCEEEccCcccc
Q 036117          271 TIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNS-----SIPK----ELGFCANLTFLELSINNLT  341 (641)
Q Consensus       271 ~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~-----~~~~----~l~~~~~L~~L~l~~n~l~  341 (641)
                      ..+..++.+++|++|++++|.+.+..+..+..+++|++|+++++...+     .+|.    .+..+++|++|++++|++.
T Consensus       263 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~  342 (680)
T 1ziw_A          263 VGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIP  342 (680)
T ss_dssp             ECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBC
T ss_pred             cCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccC
Confidence            666666667777777777777666666666667777777776654332     1221    4556667777777777777


Q ss_pred             ccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCC--CCCCCCEEEccCCcCcCCchhhhhCCCCCCeEe
Q 036117          342 GSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIG--LLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQ  419 (641)
Q Consensus       342 ~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~--~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  419 (641)
                      +..+..+..+++|++|++++|.+.-.        .+   -...+.  ..++|+.|++++|++++..|.++..+++|+.|+
T Consensus       343 ~~~~~~~~~l~~L~~L~Ls~n~~~~~--------~l---~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  411 (680)
T 1ziw_A          343 GIKSNMFTGLINLKYLSLSNSFTSLR--------TL---TNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLD  411 (680)
T ss_dssp             CCCTTTTTTCTTCCEEECTTCBSCCC--------EE---CTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEE
T ss_pred             CCChhHhccccCCcEEECCCCchhhh--------hc---chhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEe
Confidence            66666666677777777666643210        00   001111  135789999999999888888888899999999


Q ss_pred             cccCcCCccCc-ccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCccc--ccCCccccCCCCCceE
Q 036117          420 LANNFFNGSIP-STIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFS--GKLPPGICRGGNLIYL  496 (641)
Q Consensus       420 l~~n~l~~~~~-~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~--~~~~~~~~~~~~L~~L  496 (641)
                      +++|.+.+.++ ..+..+++|++|++++|.+.+..+..+..++      +|++|++++|.+.  +.+|..+..+++|+.|
T Consensus       412 L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~------~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L  485 (680)
T 1ziw_A          412 LGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVP------SLQRLMLRRVALKNVDSSPSPFQPLRNLTIL  485 (680)
T ss_dssp             CCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCT------TCCEEECTTSCCBCTTCSSCTTTTCTTCCEE
T ss_pred             CCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCc------ccccchhccccccccccCCcccccCCCCCEE
Confidence            99999887665 6788899999999999998877777777666      8999999999876  4678888889999999


Q ss_pred             eccCCcccCCCccccccCCCCcEEECCCCcCccccC--------cccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEE
Q 036117          497 TANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDIT--------NALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNF  568 (641)
Q Consensus       497 ~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~--------~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L  568 (641)
                      ++++|++.+..+..+.++++|++|++++|++.+..+        ..++.+++|++|++++|+++...+..+.++++|++|
T Consensus       486 ~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L  565 (680)
T 1ziw_A          486 DLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKII  565 (680)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCccee
Confidence            999999987777788899999999999998876422        236788999999999999986666678899999999


Q ss_pred             eCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCcccc-CCCCCCEEeCcCCCCcccCc
Q 036117          569 RISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLF-RSSFLIRLNLRRNQLSDKIP  628 (641)
Q Consensus       569 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~-~~~~L~~l~l~~n~l~~~~p  628 (641)
                      ++++|++++..+..|.++++|+.|+|++|++++..|..+. .+++|+.+++++|++....+
T Consensus       566 ~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c~  626 (680)
T 1ziw_A          566 DLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTCE  626 (680)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCCC
T ss_pred             ECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCCc
Confidence            9999999876667788899999999999999876666565 67889999999999876554

>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*

Probab=100.00  E-value=1.1e-56  Score=500.92  Aligned_cols=563  Identities=21%  Similarity=0.185  Sum_probs=469.2

Q ss_pred             EEEcCCCCCccccCCcCCCCCCCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccc
Q 036117           67 EINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNN  146 (641)
Q Consensus        67 ~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n  146 (641)
                      .++.++++++ .+| ..+.  +++++|++++|.+.+..+..|.++++|++|++++|.+++..|..|+++++|++|++++|
T Consensus         8 ~~~cs~~~L~-~ip-~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n   83 (680)
T 1ziw_A            8 VADCSHLKLT-QVP-DDLP--TNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHN   83 (680)
T ss_dssp             EEECCSSCCS-SCC-SCSC--TTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSS
T ss_pred             eeECCCCCcc-ccc-cccC--CCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCC
Confidence            3555555554 345 3343  79999999999999887888999999999999999999988999999999999999999


Q ss_pred             cCCCCCChhccCCCCCcEEEeccccCCCCCCcccCCCCCCCEEEcCCCCCCCC-chhhcCCCCCcEEEeeCCcCCCCCCh
Q 036117          147 SLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKF-PSFIAECSKLMFLDLSDNLIMGHIPI  225 (641)
Q Consensus       147 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l-~~~l~~~~~L~~L~l~~~~~~~~~~~  225 (641)
                      .+++..+..|.++++|++|++++|.+.++.+..|.++++|++|++++|.+... +..+.++++|++|++++|.+.+. +.
T Consensus        84 ~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~  162 (680)
T 1ziw_A           84 ELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQAL-KS  162 (680)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCB-CH
T ss_pred             ccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCccccc-CH
Confidence            99976666899999999999999999999989999999999999999999554 56788999999999999999854 43


Q ss_pred             hhhc--CCCCCcEEeccCCcccccCCcccCCCCCCCEEEcCCCcCCccCCcccC---CCCcccEeeeecccccccCcccc
Q 036117          226 EQLT--HLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIG---LLSNLEILEFHENLFHGLIPSSL  300 (641)
Q Consensus       226 ~~l~--~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~---~~~~L~~L~l~~n~~~~~~~~~l  300 (641)
                      ..+.  .+++|++|++++|.+++..+..+..+++|+.+++.++.+.+.....+.   ..++|++|++++|.+.+..+..+
T Consensus       163 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~  242 (680)
T 1ziw_A          163 EELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTF  242 (680)
T ss_dssp             HHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTT
T ss_pred             HHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChhHh
Confidence            3333  568999999999999988888888888888888888776532221111   24678888888888887777777


Q ss_pred             CCCCC--CCeeeccCccCCCCCCcCCCCCCCCCEEEccCccccccCchhhhcCCCCCeEeCCccc---------------
Q 036117          301 GNLRR--LQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQ---------------  363 (641)
Q Consensus       301 ~~l~~--L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~---------------  363 (641)
                      ..++.  |++|++++|.+.+..+..+..+++|++|++++|++.+..|..+..+++|+.|++++|.               
T Consensus       243 ~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~  322 (680)
T 1ziw_A          243 LGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDD  322 (680)
T ss_dssp             GGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECT
T ss_pred             hccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccccccccccCh
Confidence            76654  8888888888877777778888888888888888887777788888888888887642               


Q ss_pred             -----ccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCC--chhhhhC--CCCCCeEecccCcCCccCccccc
Q 036117          364 -----LSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGP--IPQQIGN--LTNLFDLQLANNFFNGSIPSTIG  434 (641)
Q Consensus       364 -----~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~--~~~~~~~--l~~L~~L~l~~n~l~~~~~~~l~  434 (641)
                           +..++++++++|.+.+..+..+..+++|++|++++|.+...  ....|..  .++|+.|++++|.+.+..+..+.
T Consensus       323 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~  402 (680)
T 1ziw_A          323 FSFQWLKCLEHLNMEDNDIPGIKSNMFTGLINLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFS  402 (680)
T ss_dssp             TTTTTCTTCCEEECCSCCBCCCCTTTTTTCTTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTT
T ss_pred             hhcccCCCCCEEECCCCccCCCChhHhccccCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhh
Confidence                 24677788888888888888899999999999999975432  2223333  36899999999999988888999


Q ss_pred             CCCCCCEEEccCCcCcccCC-cchhcCCCCCCCCCccEEEccCCcccccCCccccCCCCCceEeccCCccc--CCCcccc
Q 036117          435 NLSSLVKLSLSSNQLTGTLP-PEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLV--GPIPESL  511 (641)
Q Consensus       435 ~l~~L~~L~ls~n~l~~~~~-~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~--~~~~~~l  511 (641)
                      .+++|++|++++|.+.+.+| ..+..+.      +|++|++++|++.+..+..+..++.|+.|++++|.+.  +.+|..+
T Consensus       403 ~l~~L~~L~L~~N~l~~~~~~~~~~~l~------~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~  476 (680)
T 1ziw_A          403 WLGHLEVLDLGLNEIGQELTGQEWRGLE------NIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPF  476 (680)
T ss_dssp             TCTTCCEEECCSSCCEEECCSGGGTTCT------TCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTT
T ss_pred             CCCCCCEEeCCCCcCccccCcccccCcc------cccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCccc
Confidence            99999999999999988776 5666776      8999999999999888888999999999999999986  5788899


Q ss_pred             ccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCC--------hhhhcCCCCCEEeCcCCcCcccCCccc
Q 036117          512 WNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLT--------SNWGKCTNLSNFRISGNRIKGGIPAEL  583 (641)
Q Consensus       512 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~--------~~~~~l~~L~~L~L~~n~l~~~~p~~l  583 (641)
                      .++++|+.|++++|++.+..+..++.+++|++|++++|++++..+        ..+.++++|++|++++|+++...+..|
T Consensus       477 ~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~  556 (680)
T 1ziw_A          477 QPLRNLTILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVF  556 (680)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTT
T ss_pred             ccCCCCCEEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHc
Confidence            999999999999999998888889999999999999999986532        237889999999999999995444569


Q ss_pred             cCCCCCCEEeCCCCcCcccCCccccCCCCCCEEeCcCCCCcccCccccc-CCCCCcCC
Q 036117          584 GNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIPAEIG-KLSRLQYL  640 (641)
Q Consensus       584 ~~l~~L~~L~L~~n~l~~~ip~~l~~~~~L~~l~l~~n~l~~~~p~~~~-~l~~L~~l  640 (641)
                      +++++|++|++++|++++..+..+..+++|+.|++++|++++..|..++ .+++|+.|
T Consensus       557 ~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l  614 (680)
T 1ziw_A          557 KDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTEL  614 (680)
T ss_dssp             TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEE
T ss_pred             ccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEE
Confidence            9999999999999999954444567899999999999999998888776 56777655

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=3.7e-56  Score=490.17  Aligned_cols=514  Identities=20%  Similarity=0.201  Sum_probs=327.2

Q ss_pred             CCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEec
Q 036117           89 NLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIG  168 (641)
Q Consensus        89 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~  168 (641)
                      ++++|++++|.+++..|..|..+++|++|++++|.+.+..|.+|+++++|++|++++|.+++..|..|.++++|++|+++
T Consensus        34 ~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~  113 (606)
T 3t6q_A           34 STECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLFFI  113 (606)
T ss_dssp             TCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEECT
T ss_pred             cCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEeecc
Confidence            57777777777776667777777777777777777776667777777777777777777777777777777777777777


Q ss_pred             cccCCCCCCcccCCCCCCCEEEcCCCCCCCCc-hhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCc--EEeccCCccc
Q 036117          169 ANYLEDPDPVKFKGMASLTDLWLDYNLLEKFP-SFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLE--YLNLTKNSFE  245 (641)
Q Consensus       169 ~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~-~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~--~L~l~~n~~~  245 (641)
                      +|.+++..+..+.++++|++|++++|.+..++ ..+..+++|++|++++|.+. .++...+..+++|+  .|++++|.+.
T Consensus       114 ~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~l~L~l~~n~l~  192 (606)
T 3t6q_A          114 QTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIH-YLSKEDMSSLQQATNLSLNLNGNDIA  192 (606)
T ss_dssp             TSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCC-EECHHHHHTTTTCCSEEEECTTCCCC
T ss_pred             ccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCccc-ccChhhhhhhcccceeEEecCCCccC
Confidence            77777766667777777777777777776542 23334777777777777776 44445557777777  7777777777


Q ss_pred             ccCCcccCCCCCCCEEEcCCCcCCccCCcccCCCCcccEeeeeccccc-----ccCccccCCCC--CCCeeeccCccCCC
Q 036117          246 GEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFH-----GLIPSSLGNLR--RLQRLNLKSAGLNS  318 (641)
Q Consensus       246 ~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~-----~~~~~~l~~l~--~L~~L~l~~~~~~~  318 (641)
                      +..+..+.. .+|++|++++|..   .+..+..+.+++...+....+.     ...+..+..+.  +|+.+++++|.+.+
T Consensus       193 ~~~~~~~~~-~~L~~L~l~~~~~---~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l~~  268 (606)
T 3t6q_A          193 GIEPGAFDS-AVFQSLNFGGTQN---LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYFFN  268 (606)
T ss_dssp             EECTTTTTT-CEEEEEECTTCSC---HHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCCSS
T ss_pred             ccChhHhhh-ccccccccCCchh---HHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCccCc
Confidence            655555443 5677777777642   1222222222222222111111     11111222221  46666666666665


Q ss_pred             CCCcCCCCCCCCCEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccC
Q 036117          319 SIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFD  398 (641)
Q Consensus       319 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~  398 (641)
                      ..+..+..+++|++|++++|+++ .+|..+..+++|++|++++|.+..             ..|..+..+++|++|++++
T Consensus       269 ~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~-------------~~~~~~~~l~~L~~L~l~~  334 (606)
T 3t6q_A          269 ISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFEN-------------LCQISASNFPSLTHLSIKG  334 (606)
T ss_dssp             CCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSB-------------GGGGCGGGCTTCSEEECCS
T ss_pred             cCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCc-------------CchhhhhccCcCCEEECCC
Confidence            55555666666666666666666 555556666666666655544332             2234455566666666666


Q ss_pred             CcCcCCchh-hhhCCCCCCeEecccCcCCccC--cccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEcc
Q 036117          399 NKFSGPIPQ-QIGNLTNLFDLQLANNFFNGSI--PSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFS  475 (641)
Q Consensus       399 n~l~~~~~~-~~~~l~~L~~L~l~~n~l~~~~--~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls  475 (641)
                      |.+.+.++. .+..+++|++|++++|.+.+..  +..+..+++|++|++++|.+.+..|..+..++      +|++|+++
T Consensus       335 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~------~L~~L~l~  408 (606)
T 3t6q_A          335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECP------QLELLDLA  408 (606)
T ss_dssp             CSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCT------TCSEEECT
T ss_pred             CCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCc------cCCeEECC
Confidence            666544433 3566666666666666666443  45566666666666666666666565555555      66666666


Q ss_pred             CCcccccCCcc-ccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccc---cCcccCCCCCCcEEeCCCCcc
Q 036117          476 YNNFSGKLPPG-ICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGD---ITNALGIYPDLQYIDLGDNQL  551 (641)
Q Consensus       476 ~n~l~~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~---~~~~~~~l~~L~~L~Ls~n~~  551 (641)
                      +|++++..+.. +..+++|+.|++++|.+.+..|..+..+++|++|++++|++.+.   .+..++.+++|++|++++|++
T Consensus       409 ~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l  488 (606)
T 3t6q_A          409 FTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDL  488 (606)
T ss_dssp             TCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCC
T ss_pred             CCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCcc
Confidence            66666554433 56666777777777777666666666677777777777766652   224566667777777777777


Q ss_pred             cccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCccccCCCCCCEEeCcCCCCcccCc
Q 036117          552 SGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIP  628 (641)
Q Consensus       552 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~~~L~~l~l~~n~l~~~~p  628 (641)
                      ++..|..++.+++|++|++++|++++..|..+.++++| +|++++|++++..|..+..+++|+.+++++|++.+..+
T Consensus       489 ~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          489 SSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             CccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            76666667777777777777777776666777777777 77777777776556666666777777777777665443

>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*

Probab=100.00  E-value=2.3e-54  Score=475.81  Aligned_cols=515  Identities=18%  Similarity=0.137  Sum_probs=443.8

Q ss_pred             CCEEEEEcCCCCCccccCCcCCCCCCCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEE
Q 036117           63 GSISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLL  142 (641)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  142 (641)
                      ..+++|+++++.+.+..+ ..|+++++|++|++++|.+.+..|.+|..+++|++|++++|.+++..|..|+++++|++|+
T Consensus        33 ~~l~~L~Ls~n~i~~~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~  111 (606)
T 3t6q_A           33 NSTECLEFSFNVLPTIQN-TTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPKALKHLF  111 (606)
T ss_dssp             TTCCEEECTTCCCSEECT-TTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCTTCCEEE
T ss_pred             CcCcEEEccCCccCcCCh-hHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcccccChhhhcccccccEee
Confidence            478999999999997656 7899999999999999999988899999999999999999999988899999999999999


Q ss_pred             cccccCCCCCChhccCCCCCcEEEeccccCCCCCCcccCCCCCCCEEEcCCCCCCCC-chhhcCCCCCc--EEEeeCCcC
Q 036117          143 LYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKF-PSFIAECSKLM--FLDLSDNLI  219 (641)
Q Consensus       143 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l-~~~l~~~~~L~--~L~l~~~~~  219 (641)
                      +++|.+++..+..+.++++|++|++++|.+.+.....+.++++|++|++++|.+..+ +..+..+++|+  .|++++|.+
T Consensus       112 L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~l~~n~l  191 (606)
T 3t6q_A          112 FIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLNLNGNDI  191 (606)
T ss_dssp             CTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEECTTCCC
T ss_pred             ccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEecCCCcc
Confidence            999999987788899999999999999999987766677799999999999999776 56799999999  999999999


Q ss_pred             CCCCChhhhcCCCCCcEEeccCCcccccCCcccCCCCCCCEEEcCCCcCCc-----cCCcccCCCC--cccEeeeecccc
Q 036117          220 MGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTG-----TIPDEIGLLS--NLEILEFHENLF  292 (641)
Q Consensus       220 ~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~-----~~~~~l~~~~--~L~~L~l~~n~~  292 (641)
                      .+..+ .. .....|++|++++|..   .+..+..+.+++...+....+.+     ..+..+..+.  +++.|++++|.+
T Consensus       192 ~~~~~-~~-~~~~~L~~L~l~~~~~---~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~l  266 (606)
T 3t6q_A          192 AGIEP-GA-FDSAVFQSLNFGGTQN---LLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHYF  266 (606)
T ss_dssp             CEECT-TT-TTTCEEEEEECTTCSC---HHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCCC
T ss_pred             CccCh-hH-hhhccccccccCCchh---HHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCcc
Confidence            85444 44 3446899999999862   33344444443333332222211     1122233332  799999999999


Q ss_pred             cccCccccCCCCCCCeeeccCccCCCCCCcCCCCCCCCCEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeec
Q 036117          293 HGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQL  372 (641)
Q Consensus       293 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l  372 (641)
                      .+..+..+..+++|++|++++|.+. .+|..+..+++|++|++++|.+.+..|..+..+++|++|++++|.+        
T Consensus       267 ~~~~~~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~--------  337 (606)
T 3t6q_A          267 FNISSNTFHCFSGLQELDLTATHLS-ELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKGNTK--------  337 (606)
T ss_dssp             SSCCTTTTTTCTTCSEEECTTSCCS-CCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCSCSS--------
T ss_pred             CccCHHHhccccCCCEEeccCCccC-CCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCCCCc--------
Confidence            9888888999999999999999986 6777889999999999999999988888999999999999666654        


Q ss_pred             ccccccccCCc-CCCCCCCCCEEEccCCcCcCCc--hhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcC
Q 036117          373 QMNDLSGKLPP-EIGLLPKLEYLYLFDNKFSGPI--PQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQL  449 (641)
Q Consensus       373 ~~~~l~~~~~~-~l~~~~~L~~L~L~~n~l~~~~--~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l  449 (641)
                           .+.++. .+..+++|++|++++|.+++..  +..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+
T Consensus       338 -----~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  412 (606)
T 3t6q_A          338 -----RLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRL  412 (606)
T ss_dssp             -----CCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCE
T ss_pred             -----ccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcC
Confidence                 334443 4788999999999999998766  77889999999999999999988888999999999999999999


Q ss_pred             cccCCcc-hhcCCCCCCCCCccEEEccCCcccccCCccccCCCCCceEeccCCcccCC---CccccccCCCCcEEECCCC
Q 036117          450 TGTLPPE-IGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGP---IPESLWNCTGLTRVRLEQN  525 (641)
Q Consensus       450 ~~~~~~~-~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~---~~~~l~~~~~L~~L~l~~n  525 (641)
                      .+..+.. +..++      +|++|++++|.+++..|..+..+++|+.|++++|++.+.   .+..+..+++|++|++++|
T Consensus       413 ~~~~~~~~~~~l~------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n  486 (606)
T 3t6q_A          413 KVKDAQSPFQNLH------LLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFC  486 (606)
T ss_dssp             ECCTTCCTTTTCT------TCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTS
T ss_pred             CCcccchhhhCcc------cCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCC
Confidence            8776544 66666      899999999999988898999999999999999999862   3356899999999999999


Q ss_pred             cCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCC
Q 036117          526 RLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIP  604 (641)
Q Consensus       526 ~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip  604 (641)
                      ++.+..|..++.+++|++|++++|++++..|..+.+++.| +|++++|++++..|..++.+++|++|++++|++.+..+
T Consensus       487 ~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  564 (606)
T 3t6q_A          487 DLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQNPLDCTCS  564 (606)
T ss_dssp             CCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTTCCEECSGG
T ss_pred             ccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCCCCccccCC
Confidence            9999999999999999999999999999999999999999 99999999998888889999999999999999987655

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=1.1e-54  Score=478.37  Aligned_cols=527  Identities=20%  Similarity=0.196  Sum_probs=369.2

Q ss_pred             EEEcCCCCCccccCCcCCCCCCCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccc
Q 036117           67 EINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNN  146 (641)
Q Consensus        67 ~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n  146 (641)
                      .++.++++++ .+| ..+.  +++++|++++|.+.+..+..|.++++|++|++++|.+++..|.+|+++++|++|++++|
T Consensus        15 ~~~c~~~~l~-~ip-~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n   90 (606)
T 3vq2_A           15 TYQCMDQKLS-KVP-DDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGN   90 (606)
T ss_dssp             EEECTTSCCS-SCC-TTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred             ceEccCCCcc-cCC-CCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCC
Confidence            3455555554 334 2232  67888888888888777777888888888888888888777777888888888888888


Q ss_pred             cCCCCCChhccCCCCCcEEEeccccCCCCCCcccCCCCCCCEEEcCCCCCC--CCchhhcCCCCCcEEEeeCCcCCCCCC
Q 036117          147 SLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLE--KFPSFIAECSKLMFLDLSDNLIMGHIP  224 (641)
Q Consensus       147 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~--~l~~~l~~~~~L~~L~l~~~~~~~~~~  224 (641)
                      .+++..|..|+++++|++|++++|.+.+..+..+.++++|++|++++|.+.  .+|..+.++++|++|++++|.+.+..+
T Consensus        91 ~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~  170 (606)
T 3vq2_A           91 PIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV  170 (606)
T ss_dssp             CCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECT
T ss_pred             cccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecCh
Confidence            888777888888888888888888888777777888888888888888875  467788888888888888888774333


Q ss_pred             hhhhcCCCC----CcEEeccCCcccccCCcccCCCCCCCEEEcCCCcCC-ccCCcccCCCCcccEeeeeccccccc----
Q 036117          225 IEQLTHLEN----LEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLT-GTIPDEIGLLSNLEILEFHENLFHGL----  295 (641)
Q Consensus       225 ~~~l~~l~~----L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~-~~~~~~l~~~~~L~~L~l~~n~~~~~----  295 (641)
                       ..+..+++    ++++++++|.+++..+..+... +|++|++++|.+. +..|..+..++.++.+++..+.+.+.    
T Consensus       171 -~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~  248 (606)
T 3vq2_A          171 -NDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLE  248 (606)
T ss_dssp             -TTTHHHHHCTTCCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCS
T ss_pred             -hhhhhhhccccccceeeccCCCcceeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCccc
Confidence             32344433    4478888888875544444443 7888888888775 34555667777777777655443221    


Q ss_pred             --CccccCCCC--CCCeeec-cCccCCCCCCcCCCCCCCCCEEEccCccccccCchhhhcCCCCCeEeCCccccccccee
Q 036117          296 --IPSSLGNLR--RLQRLNL-KSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISL  370 (641)
Q Consensus       296 --~~~~l~~l~--~L~~L~l-~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l  370 (641)
                        .+..+..+.  .++.+++ ..+.+.+..+. +..+++|+.|++++|.+. .+| .+..+++|++|++++|.+.     
T Consensus       249 ~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~-~l~-~l~~~~~L~~L~l~~n~l~-----  320 (606)
T 3vq2_A          249 IFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIK-YLE-DVPKHFKWQSLSIIRCQLK-----  320 (606)
T ss_dssp             CCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCC-CCC-CCCTTCCCSEEEEESCCCS-----
T ss_pred             ccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccch-hhh-hccccccCCEEEcccccCc-----
Confidence              111122222  2445555 44555555554 667777777777777775 344 5666677777775555432     


Q ss_pred             ecccccccccCCcCCCCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCcc--CcccccCCCCCCEEEccCCc
Q 036117          371 QLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGS--IPSTIGNLSSLVKLSLSSNQ  448 (641)
Q Consensus       371 ~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~ls~n~  448 (641)
                               .+| .+ .+++|++|++++|+..+..  .+..+++|++|++++|.+.+.  ++..+..+++|++|++++|.
T Consensus       321 ---------~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~  387 (606)
T 3vq2_A          321 ---------QFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG  387 (606)
T ss_dssp             ---------SCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS
T ss_pred             ---------ccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc
Confidence                     344 33 6777777777777544333  456777777777777777654  36667777777777777777


Q ss_pred             CcccCCcchhcCCCCCCCCCccEEEccCCcccccCC-ccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcC
Q 036117          449 LTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLP-PGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRL  527 (641)
Q Consensus       449 l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l  527 (641)
                      +.+ +|..+..+.      +|++|++++|++.+..| ..+..+++|+.|++++|++.+..|..+.++++|++|++++|++
T Consensus       388 l~~-~~~~~~~l~------~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l  460 (606)
T 3vq2_A          388 AII-MSANFMGLE------ELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSF  460 (606)
T ss_dssp             EEE-ECCCCTTCT------TCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEE
T ss_pred             ccc-chhhccCCC------CCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcC
Confidence            663 445555555      77777777777776665 5677777788888888877777777777778888888888877


Q ss_pred             cc-ccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCcc
Q 036117          528 DG-DITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQ  606 (641)
Q Consensus       528 ~~-~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~  606 (641)
                      .+ ..|..++.+++|++|++++|++++..|..+.++++|++|++++|++++..|..++++++|++|+|++|+++ .+|..
T Consensus       461 ~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~  539 (606)
T 3vq2_A          461 KDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGI  539 (606)
T ss_dssp             GGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESC
T ss_pred             CCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHh
Confidence            76 36777777788888888888877777777777888888888888887777777778888888888888877 67776


Q ss_pred             ccCCC-CCCEEeCcCCCCcccCc
Q 036117          607 LFRSS-FLIRLNLRRNQLSDKIP  628 (641)
Q Consensus       607 l~~~~-~L~~l~l~~n~l~~~~p  628 (641)
                      +..++ +|+.+++++|++.+..+
T Consensus       540 ~~~l~~~L~~l~l~~N~~~c~c~  562 (606)
T 3vq2_A          540 LQHFPKSLAFFNLTNNSVACICE  562 (606)
T ss_dssp             GGGSCTTCCEEECCSCCCCCSST
T ss_pred             HhhhcccCcEEEccCCCcccCCc
Confidence            77775 58888888887765444

>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*

Probab=100.00  E-value=2.3e-53  Score=467.91  Aligned_cols=518  Identities=18%  Similarity=0.166  Sum_probs=445.9

Q ss_pred             CCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEecc
Q 036117           90 LTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGA  169 (641)
Q Consensus        90 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~  169 (641)
                      -++++.+++.++ .+|..+.  +++++|++++|.+++..+..|.++++|++|++++|.+++..|..|.++++|++|++++
T Consensus        13 ~~~~~c~~~~l~-~ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~   89 (606)
T 3vq2_A           13 NITYQCMDQKLS-KVPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTG   89 (606)
T ss_dssp             TTEEECTTSCCS-SCCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTT
T ss_pred             CCceEccCCCcc-cCCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCC
Confidence            457899999888 5676554  7899999999999988888999999999999999999988899999999999999999


Q ss_pred             ccCCCCCCcccCCCCCCCEEEcCCCCCCCCc-hhhcCCCCCcEEEeeCCcCCC-CCChhhhcCCCCCcEEeccCCccccc
Q 036117          170 NYLEDPDPVKFKGMASLTDLWLDYNLLEKFP-SFIAECSKLMFLDLSDNLIMG-HIPIEQLTHLENLEYLNLTKNSFEGE  247 (641)
Q Consensus       170 n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~-~~l~~~~~L~~L~l~~~~~~~-~~~~~~l~~l~~L~~L~l~~n~~~~~  247 (641)
                      |.+.+..+..|.++++|++|++++|.+..++ ..++++++|++|++++|.+.+ .+|. .+.++++|++|++++|.+++.
T Consensus        90 n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~-~~~~l~~L~~L~Ls~n~l~~~  168 (606)
T 3vq2_A           90 NPIQSFSPGSFSGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPA-YFSNLTNLVHVDLSYNYIQTI  168 (606)
T ss_dssp             CCCCCCCTTSSTTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCG-GGGTCTTCCEEECCSSCCCEE
T ss_pred             CcccccChhhcCCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechH-hHhhcCCCCEEEccCCcceec
Confidence            9999999999999999999999999997776 679999999999999999985 4554 459999999999999999988


Q ss_pred             CCcccCCCCCCC----EEEcCCCcCCccCCcccCCCCcccEeeeeccccc-ccCccccCCCCCCCeeeccCccCCCC---
Q 036117          248 IPREIKTFPKLR----HLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFH-GLIPSSLGNLRRLQRLNLKSAGLNSS---  319 (641)
Q Consensus       248 ~~~~l~~l~~L~----~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~---  319 (641)
                      .+..++.+++|+    +|++++|.+.+..+..+.. .+|++|++++|.+. +..+..+..++.++.+++..+.+...   
T Consensus       169 ~~~~~~~l~~L~~~l~~L~l~~n~l~~~~~~~~~~-~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l  247 (606)
T 3vq2_A          169 TVNDLQFLRENPQVNLSLDMSLNPIDFIQDQAFQG-IKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNL  247 (606)
T ss_dssp             CTTTTHHHHHCTTCCCEEECTTCCCCEECTTTTTT-CEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCC
T ss_pred             ChhhhhhhhccccccceeeccCCCcceeCcccccC-ceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcc
Confidence            787777666554    8999999998655555544 49999999999886 45677888999999888865544221   


Q ss_pred             ---CCcCCCCCC--CCCEEEc-cCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCE
Q 036117          320 ---IPKELGFCA--NLTFLEL-SINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEY  393 (641)
Q Consensus       320 ---~~~~l~~~~--~L~~L~l-~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~  393 (641)
                         .+..+..+.  .++.+++ ..+.+.+.+|. +..+++|+.|++++|.+..+              | .+..+++|++
T Consensus       248 ~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l--------------~-~l~~~~~L~~  311 (606)
T 3vq2_A          248 EIFEPSIMEGLCDVTIDEFRLTYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYL--------------E-DVPKHFKWQS  311 (606)
T ss_dssp             SCCCGGGGTTGGGSEEEEEEECCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCC--------------C-CCCTTCCCSE
T ss_pred             cccChHHhhhhhhccHhheeccccccccccccc-cccCCCCCEEEecCccchhh--------------h-hccccccCCE
Confidence               111122222  4666777 66778877776 88899999999888776543              3 6777899999


Q ss_pred             EEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCccc--CCcchhcCCCCCCCCCccE
Q 036117          394 LYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGT--LPPEIGNSKSDFGPRFLRN  471 (641)
Q Consensus       394 L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~--~~~~~~~~~~~~~~~~L~~  471 (641)
                      |++++|.+ +.+| .+ .+++|++|++++|...+..  .+..+++|++|++++|.+++.  +|..+..++      +|++
T Consensus       312 L~l~~n~l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~------~L~~  380 (606)
T 3vq2_A          312 LSIIRCQL-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTN------SLRH  380 (606)
T ss_dssp             EEEESCCC-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCS------CCCE
T ss_pred             EEcccccC-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCC------cccE
Confidence            99999999 5777 45 8999999999999766544  577899999999999999866  477888877      8999


Q ss_pred             EEccCCcccccCCccccCCCCCceEeccCCcccCCCc-cccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCc
Q 036117          472 VSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIP-ESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQ  550 (641)
Q Consensus       472 L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  550 (641)
                      |++++|.+++ +|..+..+++|+.|++++|++.+..| ..+.++++|++|++++|.+.+..|..++.+++|++|++++|+
T Consensus       381 L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~  459 (606)
T 3vq2_A          381 LDLSFNGAII-MSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNS  459 (606)
T ss_dssp             EECCSCSEEE-ECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCE
T ss_pred             eECCCCcccc-chhhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCc
Confidence            9999999884 66889999999999999999998877 689999999999999999999999999999999999999999


Q ss_pred             ccc-cCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCccccCCCCCCEEeCcCCCCcccCcc
Q 036117          551 LSG-VLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIPA  629 (641)
Q Consensus       551 ~~~-~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~~~L~~l~l~~n~l~~~~p~  629 (641)
                      +++ .+|..++.+++|++|++++|++++..|..++++++|++|++++|++++.+|..+..+++|++|++++|+++ .+|.
T Consensus       460 l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~  538 (606)
T 3vq2_A          460 FKDNTLSNVFANTTNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKG  538 (606)
T ss_dssp             EGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEES
T ss_pred             CCCcchHHhhccCCCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCH
Confidence            998 47889999999999999999999999999999999999999999999888999999999999999999998 7888


Q ss_pred             cccCCC-CCcCCC
Q 036117          630 EIGKLS-RLQYLD  641 (641)
Q Consensus       630 ~~~~l~-~L~~l~  641 (641)
                      .+..++ +|+.||
T Consensus       539 ~~~~l~~~L~~l~  551 (606)
T 3vq2_A          539 ILQHFPKSLAFFN  551 (606)
T ss_dssp             CGGGSCTTCCEEE
T ss_pred             hHhhhcccCcEEE
Confidence            888886 587664

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=5.6e-51  Score=463.43  Aligned_cols=507  Identities=22%  Similarity=0.209  Sum_probs=374.6

Q ss_pred             CCCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCC-ccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEE
Q 036117           87 FPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPI-PPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLL  165 (641)
Q Consensus        87 l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~-p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L  165 (641)
                      .+++++|+|++|.+++..+..|.++++|++|++++|...+.+ |.+|+++++|++|++++|.+.+..|..|.++++|++|
T Consensus        23 p~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L  102 (844)
T 3j0a_A           23 LNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLFHLFEL  102 (844)
T ss_dssp             CTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCSSCCCE
T ss_pred             CCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCcccCEe
Confidence            456777777777777666667777777777777777554444 5667777777777777777776667777777777777


Q ss_pred             EeccccCCCCCCc--ccCCCCCCCEEEcCCCCCCCC--chhhcCCCCCcEEEeeCCcCCCCCChhhhcCC--CCCcEEec
Q 036117          166 RIGANYLEDPDPV--KFKGMASLTDLWLDYNLLEKF--PSFIAECSKLMFLDLSDNLIMGHIPIEQLTHL--ENLEYLNL  239 (641)
Q Consensus       166 ~l~~n~~~~~~~~--~l~~l~~L~~L~l~~~~~~~l--~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l--~~L~~L~l  239 (641)
                      ++++|.+.+..+.  .+.++++|++|++++|.+..+  +..+.++++|++|++++|.+.+..+.. +..+  ++|+.|++
T Consensus       103 ~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~-l~~l~~~~L~~L~L  181 (844)
T 3j0a_A          103 RLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHE-LEPLQGKTLSFFSL  181 (844)
T ss_dssp             ECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGG-GHHHHHCSSCCCEE
T ss_pred             eCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHH-cccccCCccceEEC
Confidence            7777777664433  367777777777777777544  245777777777777777776544433 3444  67777777


Q ss_pred             cCCcccccCCcccCCCCC------CCEEEcCCCcCCccCCcccCC---CCcccEeeeecc---------cccccCccccC
Q 036117          240 TKNSFEGEIPREIKTFPK------LRHLKLGQNKLTGTIPDEIGL---LSNLEILEFHEN---------LFHGLIPSSLG  301 (641)
Q Consensus       240 ~~n~~~~~~~~~l~~l~~------L~~L~L~~~~l~~~~~~~l~~---~~~L~~L~l~~n---------~~~~~~~~~l~  301 (641)
                      ++|.+.+..+..+..+++      |++|++++|.+.+..+..+..   ...++.+.+..+         .+.+.....+.
T Consensus       182 ~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~~~~~f~  261 (844)
T 3j0a_A          182 AANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDPDQNTFA  261 (844)
T ss_dssp             CCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTGGGTTTT
T ss_pred             CCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccccccccccccCCCChhhhh
Confidence            777777666666655554      778888887777666655443   245666666532         22222233344


Q ss_pred             CC--CCCCeeeccCccCCCCCCcCCCCCCCCCEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccc
Q 036117          302 NL--RRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSG  379 (641)
Q Consensus       302 ~l--~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~  379 (641)
                      .+  ++|+.|++++|.+.+..+..+..+++|+.|++++|++.+..|..+..+++|++|++++|.+             .+
T Consensus       262 ~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l-------------~~  328 (844)
T 3j0a_A          262 GLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLL-------------GE  328 (844)
T ss_dssp             TTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCC-------------SC
T ss_pred             ccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCC-------------Cc
Confidence            43  6789999999988888888888889999999999999888888888888888888555544             44


Q ss_pred             cCCcCCCCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhc
Q 036117          380 KLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGN  459 (641)
Q Consensus       380 ~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~  459 (641)
                      ..|..+..+++|++|++++|++.+..+..|..+++|+.|++++|.+++ +    ..+++|+.+++++|.++ .+|..   
T Consensus       329 ~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i----~~~~~L~~L~l~~N~l~-~l~~~---  399 (844)
T 3j0a_A          329 LYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-I----HFIPSIPDIFLSGNKLV-TLPKI---  399 (844)
T ss_dssp             CCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-C----SSCCSCSEEEEESCCCC-CCCCC---
T ss_pred             cCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-c----cCCCCcchhccCCCCcc-ccccc---
Confidence            456778888999999999999887777788889999999999998873 2    23788999999999887 55543   


Q ss_pred             CCCCCCCCCccEEEccCCccccc-CCccccCCCCCceEeccCCcccCCCcc-ccccCCCCcEEECCCCcCc-----cccC
Q 036117          460 SKSDFGPRFLRNVSFSYNNFSGK-LPPGICRGGNLIYLTANVNKLVGPIPE-SLWNCTGLTRVRLEQNRLD-----GDIT  532 (641)
Q Consensus       460 ~~~~~~~~~L~~L~ls~n~l~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~-~l~~~~~L~~L~l~~n~l~-----~~~~  532 (641)
                      ..      .++.|++++|++++. .+..+..+++|+.|++++|++.+..+. .+..+++|+.|++++|.+.     +..+
T Consensus       400 ~~------~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~  473 (844)
T 3j0a_A          400 NL------TANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCW  473 (844)
T ss_dssp             CT------TCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCS
T ss_pred             cc------ccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccch
Confidence            12      688999999988753 223456788999999999998865443 3556788999999999886     3345


Q ss_pred             cccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCccccCCCC
Q 036117          533 NALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSF  612 (641)
Q Consensus       533 ~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~~~  612 (641)
                      ..+..+++|+.|+|++|++++..|..+..+++|++|+|++|++++..|..+.  ++|+.|+|++|++++.+|..+   .+
T Consensus       474 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~---~~  548 (844)
T 3j0a_A          474 DVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVF---VS  548 (844)
T ss_dssp             SCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCC---SS
T ss_pred             hhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHh---CC
Confidence            6678889999999999999988888889999999999999999876666655  789999999999998877654   47


Q ss_pred             CCEEeCcCCCCcccC
Q 036117          613 LIRLNLRRNQLSDKI  627 (641)
Q Consensus       613 L~~l~l~~n~l~~~~  627 (641)
                      |+.+++++|++....
T Consensus       549 L~~l~l~~Np~~C~c  563 (844)
T 3j0a_A          549 LSVLDITHNKFICEC  563 (844)
T ss_dssp             CCEEEEEEECCCCSS
T ss_pred             cCEEEecCCCccccc
Confidence            889999999887543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=1.2e-52  Score=461.65  Aligned_cols=493  Identities=18%  Similarity=0.263  Sum_probs=254.0

Q ss_pred             cHHHHHHHHHHHhcCCCCC----------CCCCCCCCCCCCCccc---cceeeCCCCCEEEEEcCCCCCccccCCcCCCC
Q 036117           20 AQKEAKALLNWKSSLVSSS----------LPSWTAINSNSGPCNW---NGIQCNEVGSISEINLANSGLDGTLDGFDFSA   86 (641)
Q Consensus        20 ~~~~~~~l~~~~~~~~~~~----------~~~W~~~~~~~~~c~~---~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~   86 (641)
                      ...|+.||.+++.++..+.          .++|...   .+||.|   .||.|+..++|+.|+|+++++.|.+| +.+++
T Consensus        28 ~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~---~~~c~w~~~~GV~C~~~~~V~~L~L~~~~l~g~lp-~~l~~  103 (636)
T 4eco_A           28 YIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFN---KELDMWGAQPGVSLNSNGRVTGLSLEGFGASGRVP-DAIGQ  103 (636)
T ss_dssp             HHHHHHHHHHHHHHTTGGGCCCCC------CCCCCS---SCGGGTTCCTTEEECTTCCEEEEECTTSCCEEEEC-GGGGG
T ss_pred             HHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCC---CCcccccCCCCeEEcCCCCEEEEEecCcccCCcCC-hHHhc
Confidence            3468999999999986543          2368754   789999   99999888999999999999999999 89999


Q ss_pred             CCCCCEEECCCCCC------Cc------cCchhccCCCCCCEEECCCCcCCCCCccccCCC-------------------
Q 036117           87 FPNLTALNLNMNNL------VG------SIPAGIGNATKLILLDLSSNNLTNPIPPEIGYL-------------------  135 (641)
Q Consensus        87 l~~L~~L~L~~n~~------~~------~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l-------------------  135 (641)
                      +++|++|+|++|.+      .+      .+|...  +..|+ ++++++.+.+.+|..+..+                   
T Consensus       104 L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~~~~  180 (636)
T 4eco_A          104 LTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKKSSR  180 (636)
T ss_dssp             CTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCCCCC
T ss_pred             CccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCccccccccccc
Confidence            99999999999976      22      334333  45566 7777777777666655411                   


Q ss_pred             CCCCEEEcc--cccCCCCCChhccCCCCCcEEEeccccCCCCC-CcccCCCCCCCEEEcCCCCC-CCCchhhc--CCCCC
Q 036117          136 SDLRVLLLY--NNSLTGQIPHQLSNLQNAWLLRIGANYLEDPD-PVKFKGMASLTDLWLDYNLL-EKFPSFIA--ECSKL  209 (641)
Q Consensus       136 ~~L~~L~l~--~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~~~~-~~l~~~l~--~~~~L  209 (641)
                      ..++.+.+.  .|.+++ +|..++++++|++|++++|.+++.. ......  .      +.... +.+|..++  ++++|
T Consensus       181 ~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~--~------~~~~~~~~ip~~l~~~~l~~L  251 (636)
T 4eco_A          181 ITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWEN--E------NSEYAQQYKTEDLKWDNLKDL  251 (636)
T ss_dssp             CCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSC--T------TSHHHHHHTTSCCCGGGCTTC
T ss_pred             cchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccc--c------ccchhcccCchhhhhcccCCC
Confidence            112222221  355666 6777777777777777777766530 000000  0      00000 00344444  44444


Q ss_pred             cEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCc-ccc-cCCcccCCC------CCCCEEEcCCCcCCccCCc--ccCCC
Q 036117          210 MFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNS-FEG-EIPREIKTF------PKLRHLKLGQNKLTGTIPD--EIGLL  279 (641)
Q Consensus       210 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~-~~~-~~~~~l~~l------~~L~~L~L~~~~l~~~~~~--~l~~~  279 (641)
                      ++|++++|.+.+.+|.. +.++++|++|++++|+ +++ .+|..+..+      ++|++|++++|.++ .+|.  .++.+
T Consensus       252 ~~L~L~~n~l~~~~p~~-l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l  329 (636)
T 4eco_A          252 TDVEVYNCPNLTKLPTF-LKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKM  329 (636)
T ss_dssp             CEEEEECCTTCSSCCTT-TTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTC
T ss_pred             CEEEecCCcCCccChHH-HhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccC
Confidence            44444444444444422 2444444444444444 443 344433332      44444444444444 3333  34444


Q ss_pred             CcccEeeeecccccccCccccCCCCCCCeeeccCccCCCCCCcCCCCCCC-CCEEEccCccccccCchhhhcCC--CCCe
Q 036117          280 SNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCAN-LTFLELSINNLTGSLPLSLASLR--QISE  356 (641)
Q Consensus       280 ~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~-L~~L~l~~n~l~~~~~~~l~~~~--~L~~  356 (641)
                      ++|++|++++|.+.+.+| .+..+++|++|++++|.+. .+|..+..+++ |++|++++|.++ .+|..+...+  +|+.
T Consensus       330 ~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~  406 (636)
T 4eco_A          330 KKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSA  406 (636)
T ss_dssp             TTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEE
T ss_pred             CCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCE
Confidence            444444444444443333 3333444444444444433 33333333444 444444444444 3333322211  2333


Q ss_pred             EeCCcccccccceeecccccccccCCcCCC-------CCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccC
Q 036117          357 LGISNNQLSEIISLQLQMNDLSGKLPPEIG-------LLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSI  429 (641)
Q Consensus       357 L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~-------~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~  429 (641)
                      |+             +++|.+.+..|..+.       .+++|++|++++|++++..+..+..+++|++|++++|.++ .+
T Consensus       407 L~-------------Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l~~L~~L~Ls~N~l~-~i  472 (636)
T 4eco_A          407 ID-------------FSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTGSPLSSINLMGNMLT-EI  472 (636)
T ss_dssp             EE-------------CCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTTCCCSEEECCSSCCS-BC
T ss_pred             EE-------------CcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccCCCCCEEECCCCCCC-Cc
Confidence            33             222222222333333       3445666666666655333333444556666666666555 33


Q ss_pred             ccc-ccCC-------CCCCEEEccCCcCcccCCcchh--cCCCCCCCCCccEEEccCCcccccCCccccCCCCCceEecc
Q 036117          430 PST-IGNL-------SSLVKLSLSSNQLTGTLPPEIG--NSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTAN  499 (641)
Q Consensus       430 ~~~-l~~l-------~~L~~L~ls~n~l~~~~~~~~~--~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~  499 (641)
                      |.. +...       ++|++|++++|.++ .+|..+.  .++      +|++|++++|++++ +|..+..+++|+.|+++
T Consensus       473 ~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~------~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls  544 (636)
T 4eco_A          473 PKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLP------YLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIR  544 (636)
T ss_dssp             CSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCT------TCCEEECCSSCCSS-CCCGGGGCSSCCEEECC
T ss_pred             CHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCC------CcCEEECCCCCCCC-cChhhhcCCCCCEEECC
Confidence            322 1111       14555555555554 4444433  333      44444444444443 44444444444444442


Q ss_pred             CCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCc
Q 036117          500 VNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIK  576 (641)
Q Consensus       500 ~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~  576 (641)
                      +|+                  ++++|++.+.+|..++.+++|++|++++|++ +.+|..+.  ++|++|++++|++.
T Consensus       545 ~N~------------------~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~l~  600 (636)
T 4eco_A          545 NQR------------------DAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNPNI  600 (636)
T ss_dssp             SCB------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCTTC
T ss_pred             CCc------------------ccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCCCc
Confidence            211                  1134555555666666666666666666666 34454443  56666666666554

>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}

Probab=100.00  E-value=1.4e-50  Score=460.18  Aligned_cols=511  Identities=22%  Similarity=0.195  Sum_probs=428.8

Q ss_pred             EEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCC-ChhccCCCCCcEEEeccc
Q 036117           92 ALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQI-PHQLSNLQNAWLLRIGAN  170 (641)
Q Consensus        92 ~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~n  170 (641)
                      ..+.++++++ .+|.   ..+++++|+|++|.+++..|..|+++++|++|++++|...+.+ |..|.++++|++|++++|
T Consensus         8 ~~dcs~~~L~-~vP~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N   83 (844)
T 3j0a_A            8 IAFYRFCNLT-QVPQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSS   83 (844)
T ss_dssp             EEEESCCCSS-CCCS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTC
T ss_pred             EEEccCCCCC-CCCC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCC
Confidence            4555666666 4565   4578999999999999888999999999999999999665555 788999999999999999


Q ss_pred             cCCCCCCcccCCCCCCCEEEcCCCCCCC-Cchh--hcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCccccc
Q 036117          171 YLEDPDPVKFKGMASLTDLWLDYNLLEK-FPSF--IAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGE  247 (641)
Q Consensus       171 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~-l~~~--l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~  247 (641)
                      .+.+..+..|.++++|++|++++|.+.. ++..  +.++++|++|++++|.+.+..+...++++++|++|++++|.+++.
T Consensus        84 ~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~  163 (844)
T 3j0a_A           84 KIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLV  163 (844)
T ss_dssp             CCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCC
T ss_pred             cCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCee
Confidence            9999999999999999999999999954 5554  899999999999999998665556679999999999999999988


Q ss_pred             CCcccCCC--CCCCEEEcCCCcCCccCCcccCCCCc------ccEeeeecccccccCccccCC---CCCCCeeeccCcc-
Q 036117          248 IPREIKTF--PKLRHLKLGQNKLTGTIPDEIGLLSN------LEILEFHENLFHGLIPSSLGN---LRRLQRLNLKSAG-  315 (641)
Q Consensus       248 ~~~~l~~l--~~L~~L~L~~~~l~~~~~~~l~~~~~------L~~L~l~~n~~~~~~~~~l~~---l~~L~~L~l~~~~-  315 (641)
                      .+..+..+  ++|+.|++++|.+.+..+..++.+++      |++|++++|.+.+..+..+..   ...++.+.+..+. 
T Consensus       164 ~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~  243 (844)
T 3j0a_A          164 CEHELEPLQGKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIM  243 (844)
T ss_dssp             CSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCC
T ss_pred             CHHHcccccCCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccccc
Confidence            88888877  89999999999999888877777665      999999999988777766543   2567778776332 


Q ss_pred             --------CCCCCCcCCCC--CCCCCEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCC
Q 036117          316 --------LNSSIPKELGF--CANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEI  385 (641)
Q Consensus       316 --------~~~~~~~~l~~--~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l  385 (641)
                              +.+.....+..  .++|+.|++++|.+.+..+..+..+++|+.|++++|++             .+..+..+
T Consensus       244 ~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i-------------~~~~~~~~  310 (844)
T 3j0a_A          244 GAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKI-------------NKIADEAF  310 (844)
T ss_dssp             BCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCC-------------CEECTTTT
T ss_pred             cccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcC-------------CCCChHHh
Confidence                    22222223333  37899999999999988888899999999999666554             44566778


Q ss_pred             CCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCC
Q 036117          386 GLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFG  465 (641)
Q Consensus       386 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~  465 (641)
                      ..+++|++|++++|.+++..+..|..+++|+.|++++|.+.+..+..+..+++|++|++++|.+++ ++.    ++    
T Consensus       311 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~~----~~----  381 (844)
T 3j0a_A          311 YGLDNLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-IHF----IP----  381 (844)
T ss_dssp             TTCSSCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-CSS----CC----
T ss_pred             cCCCCCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-ccC----CC----
Confidence            899999999999999998889999999999999999999987777789999999999999999873 222    33    


Q ss_pred             CCCccEEEccCCcccccCCccccCCCCCceEeccCCcccCCC-ccccccCCCCcEEECCCCcCccccCc-ccCCCCCCcE
Q 036117          466 PRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPI-PESLWNCTGLTRVRLEQNRLDGDITN-ALGIYPDLQY  543 (641)
Q Consensus       466 ~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~-~~~l~~~~~L~~L~l~~n~l~~~~~~-~~~~l~~L~~  543 (641)
                        +|+.|++++|+++ .+|..   ...++.+++++|++.+.. +..+.++++|+.|++++|++.+..+. .+..+++|+.
T Consensus       382 --~L~~L~l~~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~  455 (844)
T 3j0a_A          382 --SIPDIFLSGNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQ  455 (844)
T ss_dssp             --SCSEEEEESCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCB
T ss_pred             --CcchhccCCCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCcccc
Confidence              8999999999998 55543   567999999999998642 33466899999999999999865443 4566899999


Q ss_pred             EeCCCCccc-----ccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCccccCCCCCCEEeC
Q 036117          544 IDLGDNQLS-----GVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNL  618 (641)
Q Consensus       544 L~Ls~n~~~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~~~L~~l~l  618 (641)
                      |++++|.++     +..+..+..+++|++|+|++|.+++..|..|.++++|++|+|++|++++..|..+.  ++|+.|++
T Consensus       456 L~Ls~N~l~~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~L  533 (844)
T 3j0a_A          456 LFLGENMLQLAWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDI  533 (844)
T ss_dssp             CEEESCCCSSSCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEE
T ss_pred             ccCCCCccccccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEEC
Confidence            999999987     44556788999999999999999999999999999999999999999965555444  89999999


Q ss_pred             cCCCCcccCcccccCCCC
Q 036117          619 RRNQLSDKIPAEIGKLSR  636 (641)
Q Consensus       619 ~~n~l~~~~p~~~~~l~~  636 (641)
                      ++|++++.+|..+.++..
T Consensus       534 s~N~l~~~~~~~~~~L~~  551 (844)
T 3j0a_A          534 SRNQLLAPNPDVFVSLSV  551 (844)
T ss_dssp             EEECCCCCCSCCCSSCCE
T ss_pred             CCCcCCCCChhHhCCcCE
Confidence            999999999988775543

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.4e-50  Score=451.54  Aligned_cols=480  Identities=20%  Similarity=0.270  Sum_probs=263.4

Q ss_pred             CcHHHHHHHHHHHhcCCCCCCCCCCCCC--CCCCC--ccc------------cceeeCCCCCEEEEEcCCCCCccccCCc
Q 036117           19 SAQKEAKALLNWKSSLVSSSLPSWTAIN--SNSGP--CNW------------NGIQCNEVGSISEINLANSGLDGTLDGF   82 (641)
Q Consensus        19 ~~~~~~~~l~~~~~~~~~~~~~~W~~~~--~~~~~--c~~------------~gv~c~~~~~v~~l~l~~~~~~~~~~~~   82 (641)
                      ...+|+.||++||+++..+   +|....  ...+|  |.|            .||.|+..++|+.|+|+++++.|.+| +
T Consensus       266 ~~~~d~~ALl~~k~~l~~~---~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~~~~V~~L~Ls~~~L~G~ip-~  341 (876)
T 4ecn_A          266 EYIKDYKALKAIWEALDGK---NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDNNGRVTGLSLAGFGAKGRVP-D  341 (876)
T ss_dssp             HHHHHHHHHHHHHHHTTGG---GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECTTSCEEEEECTTTCCEEEEC-G
T ss_pred             cchHHHHHHHHHHHHcCCC---CCCcCCCcccccCCccccccccccccccCcCceEecCCCCEEEEECccCCCCCcCc-h
Confidence            4567999999999999654   896542  01355  999            99999988999999999999999999 8


Q ss_pred             CCCCCCCCCEEEC-CCCCCCccCchhccCC-CCCCE--------------EEC-CCCcCCC-----------CCccccCC
Q 036117           83 DFSAFPNLTALNL-NMNNLVGSIPAGIGNA-TKLIL--------------LDL-SSNNLTN-----------PIPPEIGY  134 (641)
Q Consensus        83 ~~~~l~~L~~L~L-~~n~~~~~~~~~l~~l-~~L~~--------------L~L-~~n~l~~-----------~~p~~l~~  134 (641)
                      .++++++|++|+| ++|.+.|..|...... ..+..              ++. ....+.+           ..+.....
T Consensus       342 ~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~~~~  421 (876)
T 4ecn_A          342 AIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIKKDS  421 (876)
T ss_dssp             GGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCCCCC
T ss_pred             HHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCcccccccccc
Confidence            9999999999999 8887766533211000 00000              000 0000000           00000011


Q ss_pred             CCCCCEEEccc--ccCCCCCChhccCCCCCcEEEeccccCCCC-----------------CCcccC--CCCCCCEEEcCC
Q 036117          135 LSDLRVLLLYN--NSLTGQIPHQLSNLQNAWLLRIGANYLEDP-----------------DPVKFK--GMASLTDLWLDY  193 (641)
Q Consensus       135 l~~L~~L~l~~--n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-----------------~~~~l~--~l~~L~~L~l~~  193 (641)
                      ...++.+.+..  |.+++ +|..+.++++|++|++++|.+++.                 .|..+.  ++++|++|++++
T Consensus       422 ~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~  500 (876)
T 4ecn_A          422 RISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYN  500 (876)
T ss_dssp             CCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEES
T ss_pred             ccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcC
Confidence            12233333332  55555 566666666666666666666651                 333333  444455555544


Q ss_pred             CCC-CCCchhhcCCCCCcEEEeeCCc-CCC-CCChhh------hcCCCCCcEEeccCCcccccCCc--ccCCCCCCCEEE
Q 036117          194 NLL-EKFPSFIAECSKLMFLDLSDNL-IMG-HIPIEQ------LTHLENLEYLNLTKNSFEGEIPR--EIKTFPKLRHLK  262 (641)
Q Consensus       194 ~~~-~~l~~~l~~~~~L~~L~l~~~~-~~~-~~~~~~------l~~l~~L~~L~l~~n~~~~~~~~--~l~~l~~L~~L~  262 (641)
                      |.+ +.+|..+.++++|++|++++|. +.+ .+|..+      +..+++|++|++++|.++ .+|.  .+..+++|++|+
T Consensus       501 N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~l~~L~~L~~L~  579 (876)
T 4ecn_A          501 CPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE-EFPASASLQKMVKLGLLD  579 (876)
T ss_dssp             CTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC-BCCCHHHHTTCTTCCEEE
T ss_pred             CCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC-ccCChhhhhcCCCCCEEE
Confidence            443 4445555555555555555554 443 333221      123345666666666555 4555  555566666666


Q ss_pred             cCCCcCCccCCcccCCCCcccEeeeecccccccCccccCCCCC-CCeeeccCccCCCCCCcCCCCCC--CCCEEEccCcc
Q 036117          263 LGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRR-LQRLNLKSAGLNSSIPKELGFCA--NLTFLELSINN  339 (641)
Q Consensus       263 L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~-L~~L~l~~~~~~~~~~~~l~~~~--~L~~L~l~~n~  339 (641)
                      +++|.+. .+| .++.+++|+.|++++|.+. .+|..+..+++ |+.|++++|.+. .+|..+...+  +|+.|++++|+
T Consensus       580 Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~  655 (876)
T 4ecn_A          580 CVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNK  655 (876)
T ss_dssp             CTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCEEEEECCSSC
T ss_pred             CCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCCCEEECcCCc
Confidence            6666555 444 4555555666666555555 44444555555 555555555554 3344433332  25555555555


Q ss_pred             ccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCC--CCCCCCEEEccCCcCcCCchhhhhCCCCCCe
Q 036117          340 LTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIG--LLPKLEYLYLFDNKFSGPIPQQIGNLTNLFD  417 (641)
Q Consensus       340 l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~--~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  417 (641)
                      +.+.+|..                                  +..+.  .+++|+.|++++|+++...+..+..+++|+.
T Consensus       656 l~g~ip~l----------------------------------~~~l~~~~~~~L~~L~Ls~N~L~~lp~~~~~~l~~L~~  701 (876)
T 4ecn_A          656 IGSEGRNI----------------------------------SCSMDDYKGINASTVTLSYNEIQKFPTELFATGSPIST  701 (876)
T ss_dssp             TTTTSSSC----------------------------------SSCTTTCCCCCEEEEECCSSCCCSCCHHHHHTTCCCSE
T ss_pred             CCCccccc----------------------------------hhhhccccCCCcCEEEccCCcCCccCHHHHccCCCCCE
Confidence            54433211                                  01111  2346777777777777433333446777777


Q ss_pred             EecccCcCCccCcccccC--------CCCCCEEEccCCcCcccCCcchh--cCCCCCCCCCccEEEccCCcccccCCccc
Q 036117          418 LQLANNFFNGSIPSTIGN--------LSSLVKLSLSSNQLTGTLPPEIG--NSKSDFGPRFLRNVSFSYNNFSGKLPPGI  487 (641)
Q Consensus       418 L~l~~n~l~~~~~~~l~~--------l~~L~~L~ls~n~l~~~~~~~~~--~~~~~~~~~~L~~L~ls~n~l~~~~~~~~  487 (641)
                      |++++|.+. .+|..+..        +++|++|++++|.++ .+|..+.  .++      +|+.|++++|++++ +|..+
T Consensus       702 L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~------~L~~L~Ls~N~L~~-lp~~l  772 (876)
T 4ecn_A          702 IILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLP------YLSNMDVSYNCFSS-FPTQP  772 (876)
T ss_dssp             EECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCT------TCCEEECCSSCCSS-CCCGG
T ss_pred             EECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCC------CcCEEEeCCCCCCc-cchhh
Confidence            777777777 44443322        226777777777666 5565554  444      66666666666664 56666


Q ss_pred             cCCCCCceEeccC------CcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCccccc
Q 036117          488 CRGGNLIYLTANV------NKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGV  554 (641)
Q Consensus       488 ~~~~~L~~L~l~~------n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~  554 (641)
                      ..+++|+.|++++      |++.+.+|..+.++++|+.|++++|++ +.+|..+.  ++|+.|||++|++...
T Consensus       773 ~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i  842 (876)
T 4ecn_A          773 LNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISI  842 (876)
T ss_dssp             GGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEE
T ss_pred             hcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCcc
Confidence            6666666666655      344444444444444444444444444 33333322  3444444444444433

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=5.2e-49  Score=430.27  Aligned_cols=494  Identities=19%  Similarity=0.186  Sum_probs=334.4

Q ss_pred             CCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEe
Q 036117           88 PNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRI  167 (641)
Q Consensus        88 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l  167 (641)
                      +++++|++++|.+++..+..|..+++|++|++++|.+++..|..|+++++|++|++++|.+++..|..|.++++|++|++
T Consensus        28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  107 (570)
T 2z63_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  107 (570)
T ss_dssp             SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred             ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence            57999999999999887888999999999999999999877888999999999999999999888889999999999999


Q ss_pred             ccccCCCCCCcccCCCCCCCEEEcCCCCCCC--CchhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCC----cEEeccC
Q 036117          168 GANYLEDPDPVKFKGMASLTDLWLDYNLLEK--FPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENL----EYLNLTK  241 (641)
Q Consensus       168 ~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~--l~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L----~~L~l~~  241 (641)
                      ++|.+.+.....+.++++|++|++++|.+..  +|..+.++++|++|++++|.+.+ ++...+..+++|    +.+++++
T Consensus       108 ~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~~~~~L~l~~  186 (570)
T 2z63_A          108 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQS-IYCTDLRVLHQMPLLNLSLDLSL  186 (570)
T ss_dssp             TTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCE-ECGGGGHHHHTCTTCCCEEECTT
T ss_pred             cccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccce-ecHHHccchhccchhhhhcccCC
Confidence            9999998887778999999999999998864  68888888999999999888873 333444666666    7888888


Q ss_pred             CcccccCCcccCCCCCCCEEEcCCCcCCc-cCCcccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCccCCCCC
Q 036117          242 NSFEGEIPREIKTFPKLRHLKLGQNKLTG-TIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSI  320 (641)
Q Consensus       242 n~~~~~~~~~l~~l~~L~~L~L~~~~l~~-~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~  320 (641)
                      |.+.+..+..+... +|++|++++|.... .++..+..++.++...+....+...        ..++.+          .
T Consensus       187 n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~--------~~l~~~----------~  247 (570)
T 2z63_A          187 NPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNE--------GNLEKF----------D  247 (570)
T ss_dssp             CCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCC--------SSCEEC----------C
T ss_pred             CCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCc--------hhhhhc----------c
Confidence            88876666666554 68888887764332 2233445555555555443222110        111100          0


Q ss_pred             CcCCCCCC--CCCEEEccCc-cccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEcc
Q 036117          321 PKELGFCA--NLTFLELSIN-NLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLF  397 (641)
Q Consensus       321 ~~~l~~~~--~L~~L~l~~n-~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~  397 (641)
                      ...+..++  .++.++++++ .+.+..|..+..+++|+.|++++|.+.              .+|..+..+ +|++|+++
T Consensus       248 ~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~--------------~l~~~~~~~-~L~~L~l~  312 (570)
T 2z63_A          248 KSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE--------------RVKDFSYNF-GWQHLELV  312 (570)
T ss_dssp             TTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGGTTCSEEEEESCEEC--------------SCCBCCSCC-CCSEEEEE
T ss_pred             hhhhccccccchhhhhhhcchhhhhhchhhhcCcCcccEEEecCccch--------------hhhhhhccC-CccEEeec
Confidence            01111111  2445555555 455555566666666666665444432              234445555 66666666


Q ss_pred             CCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccC--CcchhcCCCCCCCCCccEEEcc
Q 036117          398 DNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTL--PPEIGNSKSDFGPRFLRNVSFS  475 (641)
Q Consensus       398 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~--~~~~~~~~~~~~~~~L~~L~ls  475 (641)
                      +|.+. .+|.  ..+++|+.|++++|.+.+..+.  ..+++|++|++++|.+++..  +..+..++      +|++|+++
T Consensus       313 ~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~------~L~~L~l~  381 (570)
T 2z63_A          313 NCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTT------SLKYLDLS  381 (570)
T ss_dssp             SCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCS------CCCEEECC
T ss_pred             cCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccC------ccCEEECC
Confidence            66665 3332  3556666666666666544433  45666666666666665432  44455555      66777777


Q ss_pred             CCcccccCCccccCCCCCceEeccCCcccCCCc-cccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCccc-c
Q 036117          476 YNNFSGKLPPGICRGGNLIYLTANVNKLVGPIP-ESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLS-G  553 (641)
Q Consensus       476 ~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~-~  553 (641)
                      +|.+.+. +..+..+++|+.|++++|.+.+..| ..+.++++|++|++++|.+.+..+..++.+++|++|++++|+++ +
T Consensus       382 ~n~l~~~-~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~  460 (570)
T 2z63_A          382 FNGVITM-SSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQEN  460 (570)
T ss_dssp             SCSEEEE-EEEEETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGG
T ss_pred             CCccccc-cccccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccc
Confidence            7666543 3336666777777777777665544 35666777777777777777666666677777777777777765 4


Q ss_pred             cCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCccccCCCCCCEEeCcCCCCcccCc
Q 036117          554 VLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIP  628 (641)
Q Consensus       554 ~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~~~L~~l~l~~n~l~~~~p  628 (641)
                      .+|..+..+++|++|++++|++++..|..++++++|++|++++|++++..|..+..+++|+.|++++|++++.+|
T Consensus       461 ~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  535 (570)
T 2z63_A          461 FLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  535 (570)
T ss_dssp             EECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             cchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCc
Confidence            566667777777777777777776666677777777777777777765555556667777777777777776665

>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}

Probab=100.00  E-value=3.2e-49  Score=431.90  Aligned_cols=490  Identities=18%  Similarity=0.172  Sum_probs=337.8

Q ss_pred             CCCEEEEEcCCCCCccccCCcCCCCCCCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEE
Q 036117           62 VGSISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVL  141 (641)
Q Consensus        62 ~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  141 (641)
                      ..+++.|+++++.+.+..+ ..|.++++|++|++++|.+.+..+..|.++++|++|++++|.+++..|..|+++++|++|
T Consensus        27 ~~~l~~L~Ls~n~l~~~~~-~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  105 (570)
T 2z63_A           27 PFSTKNLDLSFNPLRHLGS-YSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKL  105 (570)
T ss_dssp             CSSCCEEECCSCCCCEECT-TTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEE
T ss_pred             cccccEEEccCCccCccCh-hHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccc
Confidence            3579999999999986655 789999999999999999998888899999999999999999998888899999999999


Q ss_pred             EcccccCCCCCChhccCCCCCcEEEeccccCCCC-CCcccCCCCCCCEEEcCCCCCCCC-chhhcCCCCC----cEEEee
Q 036117          142 LLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDP-DPVKFKGMASLTDLWLDYNLLEKF-PSFIAECSKL----MFLDLS  215 (641)
Q Consensus       142 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~~~~~~l-~~~l~~~~~L----~~L~l~  215 (641)
                      ++++|.+++..+..++++++|++|++++|.+.+. .+..+.++++|++|++++|.+..+ +..+..+++|    +.++++
T Consensus       106 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~  185 (570)
T 2z63_A          106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS  185 (570)
T ss_dssp             ECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred             cccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccC
Confidence            9999999977666799999999999999999885 478899999999999999999766 4567777777    899999


Q ss_pred             CCcCCCCCChhhhcCCCCCcEEeccCCccc-ccCCcccCCCCCCCEEEcCCCcCCc------cCCcccCCCC--cccEee
Q 036117          216 DNLIMGHIPIEQLTHLENLEYLNLTKNSFE-GEIPREIKTFPKLRHLKLGQNKLTG------TIPDEIGLLS--NLEILE  286 (641)
Q Consensus       216 ~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~l~~l~~L~~L~L~~~~l~~------~~~~~l~~~~--~L~~L~  286 (641)
                      +|.+.+. +...+... +|++|++++|... ..++..+..++.++...+....+..      .....+..++  .++.++
T Consensus       186 ~n~l~~~-~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~  263 (570)
T 2z63_A          186 LNPMNFI-QPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFR  263 (570)
T ss_dssp             TCCCCEE-CTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEE
T ss_pred             CCCceec-CHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhh
Confidence            9999844 44454544 7999999988533 2345566777777776654432221      1111122222  234455


Q ss_pred             eecc-cccccCccccCCCCCCCeeeccCccCCCCCCcCCCCCCCCCEEEccCccccccCchhhhcCCCCCeEeCCccccc
Q 036117          287 FHEN-LFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLS  365 (641)
Q Consensus       287 l~~n-~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~  365 (641)
                      +.++ .+.+..+..+..+++|+++++++|.+. .+|..+..+ +|++|++++|.+. .+|.  ..+++|+.|+       
T Consensus       264 l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l~~--~~l~~L~~L~-------  331 (570)
T 2z63_A          264 LAYLDYYLDDIIDLFNCLTNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QFPT--LKLKSLKRLT-------  331 (570)
T ss_dssp             EEETTEEESCSTTTTGGGTTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SCCB--CBCSSCCEEE-------
T ss_pred             hhcchhhhhhchhhhcCcCcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-ccCc--ccccccCEEe-------
Confidence            5554 444455555555556666666655554 344444444 5555555555555 3332  2344444444       


Q ss_pred             ccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccC--cccccCCCCCCEEE
Q 036117          366 EIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSI--PSTIGNLSSLVKLS  443 (641)
Q Consensus       366 ~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--~~~l~~l~~L~~L~  443 (641)
                                                    +++|.+.+..+.  ..+++|++|++++|.+.+..  +..+..+++|++|+
T Consensus       332 ------------------------------l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~  379 (570)
T 2z63_A          332 ------------------------------FTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLD  379 (570)
T ss_dssp             ------------------------------EESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEE
T ss_pred             ------------------------------CcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEE
Confidence                                          444443333222  33444444444444444221  33344444555555


Q ss_pred             ccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCC-ccccCCCCCceEeccCCcccCCCccccccCCCCcEEEC
Q 036117          444 LSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLP-PGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRL  522 (641)
Q Consensus       444 ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l  522 (641)
                      +++|.+.+.. ..+..++      +|++|++++|.+.+..+ ..+..+++|+.|++++|.+.+..|..+.++++|++|++
T Consensus       380 l~~n~l~~~~-~~~~~l~------~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l  452 (570)
T 2z63_A          380 LSFNGVITMS-SNFLGLE------QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKM  452 (570)
T ss_dssp             CCSCSEEEEE-EEEETCT------TCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEEC
T ss_pred             CCCCcccccc-ccccccC------CCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEEC
Confidence            5555444222 2233333      45555555555544333 34556667777777777777667777777788888888


Q ss_pred             CCCcCc-cccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcc
Q 036117          523 EQNRLD-GDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTG  601 (641)
Q Consensus       523 ~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  601 (641)
                      ++|++. +.+|..++.+++|++|++++|++++..|..+.++++|++|++++|++++..|..+.++++|++|++++|++++
T Consensus       453 ~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~  532 (570)
T 2z63_A          453 AGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDC  532 (570)
T ss_dssp             TTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred             cCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccC
Confidence            888776 4677777888888888888888887778888888888888888888887777778888888888888888887


Q ss_pred             cCCc
Q 036117          602 KIPA  605 (641)
Q Consensus       602 ~ip~  605 (641)
                      .+|.
T Consensus       533 ~~~~  536 (570)
T 2z63_A          533 SCPR  536 (570)
T ss_dssp             CTTT
T ss_pred             CCcc
Confidence            7663

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=8.5e-48  Score=418.47  Aligned_cols=493  Identities=19%  Similarity=0.203  Sum_probs=261.0

Q ss_pred             CccccceeeCCCCCEEEEEcCCCCCccccCCcCCCCCCCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCcc
Q 036117           51 PCNWNGIQCNEVGSISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPP  130 (641)
Q Consensus        51 ~c~~~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~  130 (641)
                      .|.|.|+ |+         .++++++ .+| ..+  .++|++|++++|.+++..|..|..+++|++|++++|.+++..|.
T Consensus         3 ~C~~~~~-c~---------~~~~~l~-~ip-~~~--~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~   68 (549)
T 2z81_A            3 SCDASGV-CD---------GRSRSFT-SIP-SGL--TAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGD   68 (549)
T ss_dssp             EECTTSE-EE---------CTTSCCS-SCC-SCC--CTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTT
T ss_pred             cCCCCce-EE---------CCCCccc-ccc-ccC--CCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChh
Confidence            4899888 74         3344444 444 233  26889999999988877788888889999999999988877778


Q ss_pred             ccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEeccccCCCC-CCcccCCCCCCCEEEcCCCC-CCCCc-hhhcCCC
Q 036117          131 EIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDP-DPVKFKGMASLTDLWLDYNL-LEKFP-SFIAECS  207 (641)
Q Consensus       131 ~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~~~-~~~l~-~~l~~~~  207 (641)
                      +|+.+++|++|++++|.+++..+..|+++++|++|++++|.+.+. .+..+.++++|++|++++|. ++.+| ..+.+++
T Consensus        69 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~  148 (549)
T 2z81_A           69 AFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT  148 (549)
T ss_dssp             TTTTCTTCCEEECTTSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred             hccccccCCEEECCCCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc
Confidence            888888888888888888877777788888888888888877653 23455555566665555554 34443 2444555


Q ss_pred             CCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCcccccCCcc-cCCCCCCCEEEcCCCcCCccC--C-cccCCCCccc
Q 036117          208 KLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPRE-IKTFPKLRHLKLGQNKLTGTI--P-DEIGLLSNLE  283 (641)
Q Consensus       208 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~-l~~l~~L~~L~L~~~~l~~~~--~-~~l~~~~~L~  283 (641)
                      +|++|++++|.+.+..+.. +..+++|++|++++|.+. .++.. +..+++|++|++++|.+.+..  + .....+++|+
T Consensus       149 ~L~~L~L~~n~l~~~~~~~-l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~  226 (549)
T 2z81_A          149 SLNELEIKALSLRNYQSQS-LKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMK  226 (549)
T ss_dssp             EEEEEEEEETTCCEECTTT-TTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCC
T ss_pred             ccCeeeccCCcccccChhh-hhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhccc
Confidence            5555555555554333322 244445555555544443 12222 223444444444444444321  0 0112233444


Q ss_pred             EeeeecccccccCccccCCCCCCCeeeccCccCCCCCCcCCCCCCCCCEEEccCccccccC------chhhhcCCCCCeE
Q 036117          284 ILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSL------PLSLASLRQISEL  357 (641)
Q Consensus       284 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~------~~~l~~~~~L~~L  357 (641)
                      .|++++|.+.+..+..+                    +..+..+++|+.+++++|.+.+..      ...+..+++++.+
T Consensus       227 ~L~l~~n~l~~~~~~~l--------------------~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L  286 (549)
T 2z81_A          227 KLAFRGSVLTDESFNEL--------------------LKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETV  286 (549)
T ss_dssp             EEEEESCEEEHHHHHHH--------------------HGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEE
T ss_pred             ceeccccccchhHHHHH--------------------HHHhhhhccccccccccccccccccccccchhhhhhhcccccc
Confidence            44444444332221111                    111222334444444444333210      0112233344444


Q ss_pred             eCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCchhhh-hCCCCCCeEecccCcCCccCc---ccc
Q 036117          358 GISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQI-GNLTNLFDLQLANNFFNGSIP---STI  433 (641)
Q Consensus       358 ~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~-~~l~~L~~L~l~~n~l~~~~~---~~l  433 (641)
                      ++.++.+....        ....++......++|+.|++++|++. .+|..+ ..+++|++|++++|.+.+.++   ..+
T Consensus       287 ~l~~~~i~~~~--------~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~  357 (549)
T 2z81_A          287 TIRRLHIPQFY--------LFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACK  357 (549)
T ss_dssp             EEESCBCSCGG--------GSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCT
T ss_pred             cccccccchhh--------hcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhh
Confidence            44333322210        00001111112345666666666655 333333 356666666666666655442   224


Q ss_pred             cCCCCCCEEEccCCcCcccCC--cchhcCCCCCCCCCccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCcccc
Q 036117          434 GNLSSLVKLSLSSNQLTGTLP--PEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESL  511 (641)
Q Consensus       434 ~~l~~L~~L~ls~n~l~~~~~--~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l  511 (641)
                      ..+++|++|++++|.+++..+  ..+..++      +|++|++++|+++ .+|..+..+++|+.|++++|++. .+|..+
T Consensus       358 ~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~------~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~-~l~~~~  429 (549)
T 2z81_A          358 GAWPSLQTLVLSQNHLRSMQKTGEILLTLK------NLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR-VVKTCI  429 (549)
T ss_dssp             TSSTTCCEEECTTSCCCCHHHHHHHGGGCT------TCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS-CCCTTS
T ss_pred             hccccCcEEEccCCcccccccchhhhhcCC------CCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc-cccchh
Confidence            555666666666666543211  2233344      5566666666555 45555555555566666555554 222222


Q ss_pred             ccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCE
Q 036117          512 WNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQN  591 (641)
Q Consensus       512 ~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~  591 (641)
                        .++|++|++++|++++..    +.+++|++|++++|+++ .+|. ...+++|++|++++|++++..|..++.+++|++
T Consensus       430 --~~~L~~L~Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~  501 (549)
T 2z81_A          430 --PQTLEVLDVSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQK  501 (549)
T ss_dssp             --CTTCSEEECCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCE
T ss_pred             --cCCceEEECCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCE
Confidence              135566666666555422    34555666666666555 3333 344555666666666665555555555666666


Q ss_pred             EeCCCCcCcccCC
Q 036117          592 LDIFDNQLTGKIP  604 (641)
Q Consensus       592 L~L~~n~l~~~ip  604 (641)
                      |++++|++.+..|
T Consensus       502 L~l~~N~~~~~~~  514 (549)
T 2z81_A          502 IWLHTNPWDCSCP  514 (549)
T ss_dssp             EECCSSCBCCCHH
T ss_pred             EEecCCCccCCCc
Confidence            6666666555544

>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*

Probab=100.00  E-value=7.1e-47  Score=411.21  Aligned_cols=489  Identities=19%  Similarity=0.182  Sum_probs=352.1

Q ss_pred             CCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEec
Q 036117           89 NLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIG  168 (641)
Q Consensus        89 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~  168 (641)
                      ...+.+.+++.++ .+|..+.  ++|++|++++|.+++..|..|+++++|++|++++|.+++..|..|.++++|++|+++
T Consensus         6 ~~~~c~~~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls   82 (549)
T 2z81_A            6 ASGVCDGRSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLS   82 (549)
T ss_dssp             TTSEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECT
T ss_pred             CCceEECCCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECC
Confidence            3344677777776 4555443  678888888888877777778888888888888888877777777777888888888


Q ss_pred             cccCCCCCCcccCCCCCCCEEEcCCCCCCC--CchhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCcccc
Q 036117          169 ANYLEDPDPVKFKGMASLTDLWLDYNLLEK--FPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEG  246 (641)
Q Consensus       169 ~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~--l~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~  246 (641)
                      +|.+.+..+..|.++++|++|++++|.+..  .|..+.++++|++|++++|...+.++...+.++++|++|++++|.+++
T Consensus        83 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~  162 (549)
T 2z81_A           83 DNHLSSLSSSWFGPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRN  162 (549)
T ss_dssp             TSCCCSCCHHHHTTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCE
T ss_pred             CCccCccCHHHhccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccc
Confidence            777777766667777777777777776653  344566666666666666654444444444555555555555555555


Q ss_pred             cCCcccCCCCCCCEEEcCCCcCCccCCcccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCccCCCCC---CcC
Q 036117          247 EIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSI---PKE  323 (641)
Q Consensus       247 ~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~---~~~  323 (641)
                      ..|..+..+++|++|++++|.+.                        ......+..+++|++|++++|.+.+..   ...
T Consensus       163 ~~~~~l~~l~~L~~L~l~~n~~~------------------------~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~  218 (549)
T 2z81_A          163 YQSQSLKSIRDIHHLTLHLSESA------------------------FLLEIFADILSSVRYLELRDTNLARFQFSPLPV  218 (549)
T ss_dssp             ECTTTTTTCSEEEEEEEECSBST------------------------THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSS
T ss_pred             cChhhhhccccCceEecccCccc------------------------ccchhhHhhcccccEEEccCCccccccccccch
Confidence            45555555555555555544443                        221112233455555555555554321   112


Q ss_pred             CCCCCCCCEEEccCccccccCchh----hhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCC
Q 036117          324 LGFCANLTFLELSINNLTGSLPLS----LASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDN  399 (641)
Q Consensus       324 l~~~~~L~~L~l~~n~l~~~~~~~----l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n  399 (641)
                      ...+++|+.|++++|.+++..+..    +..+++|+.+++++|.+..+..+       .......+..+++++.|++.++
T Consensus       219 ~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~-------~~~~~~~~~~l~~L~~L~l~~~  291 (549)
T 2z81_A          219 DEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDF-------NPSESDVVSELGKVETVTIRRL  291 (549)
T ss_dssp             CCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCC-------CCCTTTCCCCCTTCCEEEEESC
T ss_pred             hhhhhcccceeccccccchhHHHHHHHHhhhhccccccccccccccccccc-------cccchhhhhhhccccccccccc
Confidence            345678999999999888754443    45678899999888876544221       1111234566789999999998


Q ss_pred             cCcCC-----chhhhhCCCCCCeEecccCcCCccCcccc-cCCCCCCEEEccCCcCcccCCcc---hhcCCCCCCCCCcc
Q 036117          400 KFSGP-----IPQQIGNLTNLFDLQLANNFFNGSIPSTI-GNLSSLVKLSLSSNQLTGTLPPE---IGNSKSDFGPRFLR  470 (641)
Q Consensus       400 ~l~~~-----~~~~~~~l~~L~~L~l~~n~l~~~~~~~l-~~l~~L~~L~ls~n~l~~~~~~~---~~~~~~~~~~~~L~  470 (641)
                      .+...     ++..+...++|+.|++++|.+. .+|..+ ..+++|++|++++|.+.+.+|..   +..++      +|+
T Consensus       292 ~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~------~L~  364 (549)
T 2z81_A          292 HIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWP------SLQ  364 (549)
T ss_dssp             BCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSST------TCC
T ss_pred             ccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccc------cCc
Confidence            76542     2233445679999999999987 677655 57999999999999998776432   44555      899


Q ss_pred             EEEccCCcccccCC--ccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCC
Q 036117          471 NVSFSYNNFSGKLP--PGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGD  548 (641)
Q Consensus       471 ~L~ls~n~l~~~~~--~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~  548 (641)
                      +|++++|++++..+  ..+..+++|++|++++|++. .+|..+..+++|++|++++|.+.+ ++..+  .++|++|++++
T Consensus       365 ~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~~-l~~~~--~~~L~~L~Ls~  440 (549)
T 2z81_A          365 TLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIRV-VKTCI--PQTLEVLDVSN  440 (549)
T ss_dssp             EEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCSC-CCTTS--CTTCSEEECCS
T ss_pred             EEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhhcccccccEEECCCCCccc-ccchh--cCCceEEECCC
Confidence            99999999975422  45788999999999999998 788889999999999999999874 33332  36899999999


Q ss_pred             CcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCccccCCCCCCEEeCcCCCCcccCc
Q 036117          549 NQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIP  628 (641)
Q Consensus       549 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~~~L~~l~l~~n~l~~~~p  628 (641)
                      |++++.+    ..+++|++|++++|+++ .+|. ...+++|++|+|++|++++.+|..+..+++|+.|++++|++++..|
T Consensus       441 N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  514 (549)
T 2z81_A          441 NNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  514 (549)
T ss_dssp             SCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred             CChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence            9999753    57899999999999998 6776 4789999999999999998888889999999999999999998887

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=1.3e-45  Score=398.29  Aligned_cols=459  Identities=20%  Similarity=0.223  Sum_probs=314.3

Q ss_pred             CEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEeccc
Q 036117           91 TALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGAN  170 (641)
Q Consensus        91 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n  170 (641)
                      +++++++|+++ .+|..+.  ++|++|++++|.+++..|..|.++++|++|++++|++++..|..|.++++|++|++++|
T Consensus         3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N   79 (520)
T 2z7x_B            3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN   79 (520)
T ss_dssp             CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred             ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence            57899999988 5676665  88999999999999877788999999999999999998888888999999999999999


Q ss_pred             cCCCCCCcccCCCCCCCEEEcCCCCCCC--CchhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCC--cEEeccCCcc--
Q 036117          171 YLEDPDPVKFKGMASLTDLWLDYNLLEK--FPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENL--EYLNLTKNSF--  244 (641)
Q Consensus       171 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~--l~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L--~~L~l~~n~~--  244 (641)
                      .++.++..   .+++|++|++++|.+..  +|..++++++|++|++++|.+.+    ..+..+++|  ++|++++|.+  
T Consensus        80 ~l~~lp~~---~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~----~~~~~l~~L~L~~L~l~~n~l~~  152 (520)
T 2z7x_B           80 KLVKISCH---PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK----SSVLPIAHLNISKVLLVLGETYG  152 (520)
T ss_dssp             CCCEEECC---CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG----GGGGGGTTSCEEEEEEEECTTTT
T ss_pred             ceeecCcc---ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch----hhccccccceeeEEEeecccccc
Confidence            88854433   78888888888888854  56788888888888888888764    234566666  8888888877  


Q ss_pred             cccCCcccCCCC-CCCEEEcCCCcCCccCCc-ccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCccCCCCCCc
Q 036117          245 EGEIPREIKTFP-KLRHLKLGQNKLTGTIPD-EIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPK  322 (641)
Q Consensus       245 ~~~~~~~l~~l~-~L~~L~L~~~~l~~~~~~-~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  322 (641)
                      .+..|..+..+. +...+++++|.+.+.++. .+..+++|+.+++++|.......                 .+.+.++ 
T Consensus       153 ~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~-----------------~~~~~~~-  214 (520)
T 2z7x_B          153 EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCS-----------------YFLSILA-  214 (520)
T ss_dssp             SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTH-----------------HHHHHHH-
T ss_pred             cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccc-----------------eeecchh-
Confidence            556666665544 233456666666554433 34556666666666664100000                 0111122 


Q ss_pred             CCCCCCCCCEEEccCccccccCchhhh---cCCCCCeEeCCcccccccceeecccccccccCCcCC-----CCCCCCCEE
Q 036117          323 ELGFCANLTFLELSINNLTGSLPLSLA---SLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEI-----GLLPKLEYL  394 (641)
Q Consensus       323 ~l~~~~~L~~L~l~~n~l~~~~~~~l~---~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l-----~~~~~L~~L  394 (641)
                      .+..+++|+.|++++|.+.+..+..+.   ..++|++|+             +++|.+.|.+|..+     +.+++|+.+
T Consensus       215 ~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L~~L~-------------l~~n~l~~~~p~~~~~~~~~~l~~L~~l  281 (520)
T 2z7x_B          215 KLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTVWYFS-------------ISNVKLQGQLDFRDFDYSGTSLKALSIH  281 (520)
T ss_dssp             GGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSCSEEE-------------EEEEEEESCCCCCCCCCCSCCCCEEEEE
T ss_pred             hhccccchhhccccccccCHHHHHHHHHHhhhCcccEEE-------------eecccccCccccchhhcccccCceeEec
Confidence            234445555555555555432222111   123455554             44444444555555     667778888


Q ss_pred             EccCCcCcCCch-hhhhCC---CCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCcc
Q 036117          395 YLFDNKFSGPIP-QQIGNL---TNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLR  470 (641)
Q Consensus       395 ~L~~n~l~~~~~-~~~~~l---~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~  470 (641)
                      ++++|.+  .+| ..+..+   .+|+.|++++|.+....  ....+++|++|++++|.+++.+|..+..++      +|+
T Consensus       282 ~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~------~L~  351 (520)
T 2z7x_B          282 QVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNNLLTDTVFENCGHLT------ELE  351 (520)
T ss_dssp             EEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCCCS------SCC
T ss_pred             cccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECCccChhhhhhhccCC------CCC
Confidence            8888877  334 344333   57888888888775321  125677888888888888777777776666      788


Q ss_pred             EEEccCCcccc--cCCccccCCCCCceEeccCCcccCCCccc-cccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCC
Q 036117          471 NVSFSYNNFSG--KLPPGICRGGNLIYLTANVNKLVGPIPES-LWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLG  547 (641)
Q Consensus       471 ~L~ls~n~l~~--~~~~~~~~~~~L~~L~l~~n~~~~~~~~~-l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls  547 (641)
                      +|++++|++++  .+|..+..+++|+.|++++|++.+.+|.. +..+++|++|++++|++++..+..+.  ++|+.|+++
T Consensus       352 ~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls  429 (520)
T 2z7x_B          352 TLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP--PRIKVLDLH  429 (520)
T ss_dssp             EEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC--TTCCEEECC
T ss_pred             EEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc--ccCCEEECC
Confidence            88888887775  45566777778888888888877655543 66777788888888877766665543  677888888


Q ss_pred             CCcccccCChhhhcCCCCCEEeCcCCcCcccCCcc-ccCCCCCCEEeCCCCcCcccCC
Q 036117          548 DNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAE-LGNLTYLQNLDIFDNQLTGKIP  604 (641)
Q Consensus       548 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~ip  604 (641)
                      +|+++ .+|..+..+++|++|++++|+++ .+|.. +..+++|++|++++|++.+..+
T Consensus       430 ~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~  485 (520)
T 2z7x_B          430 SNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  485 (520)
T ss_dssp             SSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCC
Confidence            88777 66666667778888888888777 45544 7777778888888887776543

>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}

Probab=100.00  E-value=4.7e-47  Score=417.06  Aligned_cols=456  Identities=21%  Similarity=0.299  Sum_probs=348.2

Q ss_pred             CCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCC------C------CCChhccCCCCCcEEEeccccCCCCCCcc
Q 036117          112 TKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLT------G------QIPHQLSNLQNAWLLRIGANYLEDPDPVK  179 (641)
Q Consensus       112 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~------~------~~~~~l~~l~~L~~L~l~~n~~~~~~~~~  179 (641)
                      .+++.|+|+++.+.|.+|.+++++++|++|++++|.+.      +      .+|...  +..|+ ++++++.+.+..+  
T Consensus        81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~--  155 (636)
T 4eco_A           81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPR--  155 (636)
T ss_dssp             CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGG--
T ss_pred             CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCch--
Confidence            46889999999999999999999999999999999762      1      222222  33344 4455444443222  


Q ss_pred             cCCCCCCCEEEcCCCCCCCCchhhcC-CCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEecc--CCcccccCCcccCCCC
Q 036117          180 FKGMASLTDLWLDYNLLEKFPSFIAE-CSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLT--KNSFEGEIPREIKTFP  256 (641)
Q Consensus       180 l~~l~~L~~L~l~~~~~~~l~~~l~~-~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~--~n~~~~~~~~~l~~l~  256 (641)
                                           ..+.. +..+..+++....+..       .....++.+.+.  .|.+++ +|..+++++
T Consensus       156 ---------------------~~~~~~~~~l~~~~l~~~~~~~-------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~  206 (636)
T 4eco_A          156 ---------------------EDFSDLIKDCINSDPQQKSIKK-------SSRITLKDTQIGQLSNNITF-VSKAVMRLT  206 (636)
T ss_dssp             ---------------------GGSCHHHHHHHHHCTTSCCCCC-------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCT
T ss_pred             ---------------------hhHHHHHHHHhhcCcccccccc-------ccccchhhhhhccccCCCcc-CCHHHhccc
Confidence                                 11110 0111111111111110       111223333333  467777 888888899


Q ss_pred             CCCEEEcCCCcCCcc-----------------CCcccC--CCCcccEeeeecccccccCccccCCCCCCCeeeccCcc-C
Q 036117          257 KLRHLKLGQNKLTGT-----------------IPDEIG--LLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAG-L  316 (641)
Q Consensus       257 ~L~~L~L~~~~l~~~-----------------~~~~l~--~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~-~  316 (641)
                      +|++|++++|.+++.                 +|..++  .+++|++|++++|.+.+.+|..+.++++|++|++++|. +
T Consensus       207 ~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l  286 (636)
T 4eco_A          207 KLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGI  286 (636)
T ss_dssp             TCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTS
T ss_pred             CCCEEECcCCccccccccccccccccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCC
Confidence            999999999988875                 888888  89999999999999888888888899999999999998 8


Q ss_pred             CC-CCCcCCCCC------CCCCEEEccCccccccCch--hhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCC
Q 036117          317 NS-SIPKELGFC------ANLTFLELSINNLTGSLPL--SLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGL  387 (641)
Q Consensus       317 ~~-~~~~~l~~~------~~L~~L~l~~n~l~~~~~~--~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~  387 (641)
                      ++ .+|..+..+      ++|++|++++|+++ .+|.  .+..+++|+.|++++|             .+.|.+| .++.
T Consensus       287 ~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l~~L~~L~L~~N-------------~l~g~ip-~~~~  351 (636)
T 4eco_A          287 SGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKMKKLGMLECLYN-------------QLEGKLP-AFGS  351 (636)
T ss_dssp             CHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTCTTCCEEECCSC-------------CCEEECC-CCEE
T ss_pred             ccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccCCCCCEEeCcCC-------------cCccchh-hhCC
Confidence            77 677766655      89999999999998 7887  8888888988885544             4555667 7778


Q ss_pred             CCCCCEEEccCCcCcCCchhhhhCCCC-CCeEecccCcCCccCcccccCCC--CCCEEEccCCcCcccCCcchhcCCC-C
Q 036117          388 LPKLEYLYLFDNKFSGPIPQQIGNLTN-LFDLQLANNFFNGSIPSTIGNLS--SLVKLSLSSNQLTGTLPPEIGNSKS-D  463 (641)
Q Consensus       388 ~~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L~l~~n~l~~~~~~~l~~l~--~L~~L~ls~n~l~~~~~~~~~~~~~-~  463 (641)
                      +++|++|++++|+++ .+|..+..+++ |++|++++|.++ .+|..+..++  +|++|++++|.+.+.+|..+..... .
T Consensus       352 l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~  429 (636)
T 4eco_A          352 EIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTP  429 (636)
T ss_dssp             EEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSC
T ss_pred             CCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhccccccc
Confidence            889999999999988 77888888888 999999999988 7787776654  8999999999999888887762111 1


Q ss_pred             CCCCCccEEEccCCcccccCCcc-ccCCCCCceEeccCCcccCCCccc-cccC-------CCCcEEECCCCcCccccCcc
Q 036117          464 FGPRFLRNVSFSYNNFSGKLPPG-ICRGGNLIYLTANVNKLVGPIPES-LWNC-------TGLTRVRLEQNRLDGDITNA  534 (641)
Q Consensus       464 ~~~~~L~~L~ls~n~l~~~~~~~-~~~~~~L~~L~l~~n~~~~~~~~~-l~~~-------~~L~~L~l~~n~l~~~~~~~  534 (641)
                      +..++|++|++++|+++ .+|.. +..++.|+.|++++|++. .+|.. +...       ++|++|++++|++. .+|..
T Consensus       430 ~~~~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~  506 (636)
T 4eco_A          430 FKGINVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDD  506 (636)
T ss_dssp             CCCCCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGG
T ss_pred             ccCCCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChh
Confidence            11238999999999998 56655 445899999999999998 56544 3322       38999999999999 67777


Q ss_pred             cC--CCCCCcEEeCCCCcccccCChhhhcCCCCCEEeC------cCCcCcccCCccccCCCCCCEEeCCCCcCcccCCcc
Q 036117          535 LG--IYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRI------SGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQ  606 (641)
Q Consensus       535 ~~--~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L------~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~  606 (641)
                      +.  .+++|+.|++++|++++ +|..+.++++|++|++      ++|++.+.+|..++++++|++|+|++|++ +.+|..
T Consensus       507 ~~~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~  584 (636)
T 4eco_A          507 FRATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK  584 (636)
T ss_dssp             GSTTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC
T ss_pred             hhhccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHh
Confidence            76  89999999999999997 8889999999999999      56778889999999999999999999999 689987


Q ss_pred             ccCCCCCCEEeCcCCCCcc
Q 036117          607 LFRSSFLIRLNLRRNQLSD  625 (641)
Q Consensus       607 l~~~~~L~~l~l~~n~l~~  625 (641)
                      +.  ++|+.|++++|++..
T Consensus       585 ~~--~~L~~L~Ls~N~l~~  601 (636)
T 4eco_A          585 IT--PNISVLDIKDNPNIS  601 (636)
T ss_dssp             CC--TTCCEEECCSCTTCE
T ss_pred             Hh--CcCCEEECcCCCCcc
Confidence            66  799999999997653

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=6.2e-44  Score=395.49  Aligned_cols=508  Identities=20%  Similarity=0.160  Sum_probs=300.3

Q ss_pred             CCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEe
Q 036117           88 PNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRI  167 (641)
Q Consensus        88 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l  167 (641)
                      +++++|||++|++++..+.+|.++++|++|+|++|.+++..|.+|.++++|++|+|++|++++..+..|.++++|++|++
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L  131 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  131 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence            37889999999998777778899999999999999988777778888999999999999988777778889999999999


Q ss_pred             ccccCCCCCCcccCCCCCCCEEEcCCCCCCC--CchhhcCCCCCcEEEeeCCcCCCCCChhhhcCCC----CCcEEeccC
Q 036117          168 GANYLEDPDPVKFKGMASLTDLWLDYNLLEK--FPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLE----NLEYLNLTK  241 (641)
Q Consensus       168 ~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~--l~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~----~L~~L~l~~  241 (641)
                      ++|.++++.+..|.++++|++|++++|.+..  +|..+..+++|++|++++|.+.+..+ ..+..+.    ....++++.
T Consensus       132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~l~~L~~l~~~~~~~~ls~  210 (635)
T 4g8a_A          132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYC-TDLRVLHQMPLLNLSLDLSL  210 (635)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECG-GGGHHHHTCTTCCCEEECTT
T ss_pred             CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCcccccccc-ccccchhhhhhhhhhhhccc
Confidence            9999988888888999999999999998854  56788888999999999998874333 3333333    234678888


Q ss_pred             CcccccCCcccCCCCCCCEEEcCCCcCCcc-CCcccCCCCcccEeeeeccccc------ccCccccCCCCCCCeeeccCc
Q 036117          242 NSFEGEIPREIKTFPKLRHLKLGQNKLTGT-IPDEIGLLSNLEILEFHENLFH------GLIPSSLGNLRRLQRLNLKSA  314 (641)
Q Consensus       242 n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~-~~~~l~~~~~L~~L~l~~n~~~------~~~~~~l~~l~~L~~L~l~~~  314 (641)
                      |.+....+.. .....++.+++.++..... .+..+..+..++...+..+...      ......+.....+....+..+
T Consensus       211 n~l~~i~~~~-~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~  289 (635)
T 4g8a_A          211 NPMNFIQPGA-FKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA  289 (635)
T ss_dssp             CCCCEECTTT-TTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEE
T ss_pred             CcccccCccc-ccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhh
Confidence            8877444433 3344566777777654422 1223445555555544332221      111222333333444443332


Q ss_pred             cCCC---CCCcCCCCCCCCCEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCC
Q 036117          315 GLNS---SIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKL  391 (641)
Q Consensus       315 ~~~~---~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L  391 (641)
                      ....   .....+....+++.+++.++.+....  .+.....++.|++.+|.+..+.                ...++.|
T Consensus       290 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--~~~~~~~L~~L~l~~~~~~~~~----------------~~~l~~L  351 (635)
T 4g8a_A          290 YLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--DFSYNFGWQHLELVNCKFGQFP----------------TLKLKSL  351 (635)
T ss_dssp             CCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--GGGSCCCCSEEEEESCEESSCC----------------CCBCTTC
T ss_pred             hhcccccchhhhhhhhccccccccccccccccc--ccccchhhhhhhcccccccCcC----------------cccchhh
Confidence            2211   12233445566777777776665332  2344566777776665543221                1123445


Q ss_pred             CEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCc--cCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCc
Q 036117          392 EYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNG--SIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFL  469 (641)
Q Consensus       392 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L  469 (641)
                      +.+++..|......  ....+++|+.+++++|.+..  ..+..+..+.+|+++++..+.... .+..+..+.      +|
T Consensus       352 ~~l~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~-~~~~~~~l~------~L  422 (635)
T 4g8a_A          352 KRLTFTSNKGGNAF--SEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVIT-MSSNFLGLE------QL  422 (635)
T ss_dssp             CEEEEESCCSCCBC--CCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEE-ECSCCTTCT------TC
T ss_pred             hhcccccccCCCCc--ccccccccccchhhccccccccccccchhhhhhhhhhhcccccccc-ccccccccc------cc
Confidence            55555555443221  12344555555555555432  223334445555555555554432 222233333      45


Q ss_pred             cEEEccCCcccccCC-ccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcC-ccccCcccCCCCCCcEEeCC
Q 036117          470 RNVSFSYNNFSGKLP-PGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRL-DGDITNALGIYPDLQYIDLG  547 (641)
Q Consensus       470 ~~L~ls~n~l~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l-~~~~~~~~~~l~~L~~L~Ls  547 (641)
                      +.++++++......+ ..+..++.++.++++.|.+.+..+..+..+++++.|++++|.+ .+..|..+..+++|++|+|+
T Consensus       423 ~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls  502 (635)
T 4g8a_A          423 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS  502 (635)
T ss_dssp             CEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred             cchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECC
Confidence            555555554443322 2344455555555555555555555555555555555555543 22344555555555555555


Q ss_pred             CCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCccccCC-CCCCEEeCcCCCCc
Q 036117          548 DNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRS-SFLIRLNLRRNQLS  624 (641)
Q Consensus       548 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~-~~L~~l~l~~n~l~  624 (641)
                      +|++++..|..|+++++|++|+|++|++++..|..|+++++|++|+|++|++++..|..+..+ ++|+.|++++|+++
T Consensus       503 ~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~  580 (635)
T 4g8a_A          503 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFA  580 (635)
T ss_dssp             TSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBC
T ss_pred             CCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCc
Confidence            555555555555555555555555555555555555555555555555555555555555554 45555555555554

>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}

Probab=100.00  E-value=7.7e-45  Score=392.18  Aligned_cols=452  Identities=18%  Similarity=0.131  Sum_probs=343.1

Q ss_pred             EEEEcCCCCCccccCCcCCCCCCCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEccc
Q 036117           66 SEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYN  145 (641)
Q Consensus        66 ~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~  145 (641)
                      +.+++++++++ .+| ..+.  ++|++|++++|.+.+..|..|..+++|++|++++|.+++..|..|+++++|++|++++
T Consensus         3 ~~l~ls~n~l~-~ip-~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~   78 (520)
T 2z7x_B            3 FLVDRSKNGLI-HVP-KDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSH   78 (520)
T ss_dssp             CEEECTTSCCS-SCC-CSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCS
T ss_pred             ceEecCCCCcc-ccc-cccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCC
Confidence            57899999998 566 4444  8999999999999988888999999999999999999988899999999999999999


Q ss_pred             ccCCCCCChhccCCCCCcEEEeccccCCCC-CCcccCCCCCCCEEEcCCCCCCCCchhhcCCCCC--cEEEeeCCcC--C
Q 036117          146 NSLTGQIPHQLSNLQNAWLLRIGANYLEDP-DPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKL--MFLDLSDNLI--M  220 (641)
Q Consensus       146 n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~~~~L--~~L~l~~~~~--~  220 (641)
                      |.++ .+|..  .+++|++|++++|.+.+. .+..+.++++|++|++++|.+..  ..+..+++|  ++|++++|.+  .
T Consensus        79 N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~  153 (520)
T 2z7x_B           79 NKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGE  153 (520)
T ss_dssp             SCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTS
T ss_pred             Ccee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeeccccccc
Confidence            9998 45655  899999999999999985 56899999999999999999865  457778888  9999999998  6


Q ss_pred             CCCChhhhcCCC-CCcEEeccCCcccccCCc-ccCCCCCCCEEEcCCCc-------CCccCCcccCCCCcccEeeeeccc
Q 036117          221 GHIPIEQLTHLE-NLEYLNLTKNSFEGEIPR-EIKTFPKLRHLKLGQNK-------LTGTIPDEIGLLSNLEILEFHENL  291 (641)
Q Consensus       221 ~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~L~~~~-------l~~~~~~~l~~~~~L~~L~l~~n~  291 (641)
                      +..+.. +..+. ....+++++|.+.+.++. .+..+++|+.+++++|.       +.+.++ .+..+++|+.|++++|.
T Consensus       154 ~~~~~~-l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~~  231 (520)
T 2z7x_B          154 KEDPEG-LQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNIE  231 (520)
T ss_dssp             SCCTTT-TTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEEE
T ss_pred             cccccc-ccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhccccccc
Confidence            555533 24443 233677888887765543 56789999999999987       555555 68889999999999998


Q ss_pred             ccccCccccC---CCCCCCeeeccCccCCCCCCcCC-----CCCCCCCEEEccCccccccCc-hhhhcC---CCCCeEeC
Q 036117          292 FHGLIPSSLG---NLRRLQRLNLKSAGLNSSIPKEL-----GFCANLTFLELSINNLTGSLP-LSLASL---RQISELGI  359 (641)
Q Consensus       292 ~~~~~~~~l~---~l~~L~~L~l~~~~~~~~~~~~l-----~~~~~L~~L~l~~n~l~~~~~-~~l~~~---~~L~~L~l  359 (641)
                      +.+..+..+.   ..++|++|++++|.+.+.+|..+     ..+++|+.+++++|.+  .+| ..+..+   .+|+.|++
T Consensus       232 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l  309 (520)
T 2z7x_B          232 TTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTV  309 (520)
T ss_dssp             EEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEE
T ss_pred             cCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEc
Confidence            7754332211   24689999999999988888887     8889999999999988  455 444444   67888887


Q ss_pred             CcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCc--cCcccccCCC
Q 036117          360 SNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNG--SIPSTIGNLS  437 (641)
Q Consensus       360 ~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~l~~l~  437 (641)
                      ++|.+...               .....+++|++|++++|++++..|..+..+++|++|++++|.+.+  .+|..+..++
T Consensus       310 ~~n~l~~~---------------~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~  374 (520)
T 2z7x_B          310 SGTRMVHM---------------LCPSKISPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMK  374 (520)
T ss_dssp             ESSCCCCC---------------CCCSSCCCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCT
T ss_pred             CCCccccc---------------cchhhCCcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCC
Confidence            77765432               112467888999999998888788888888888889988888885  4566788888


Q ss_pred             CCCEEEccCCcCcccCCcc-hhcCCCCCCCCCccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCC
Q 036117          438 SLVKLSLSSNQLTGTLPPE-IGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTG  516 (641)
Q Consensus       438 ~L~~L~ls~n~l~~~~~~~-~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~  516 (641)
                      +|++|++++|.+.+.+|.. +..++      +|++|++++|++++.+|..+.  ++|+.|++++|++. .+|..+..+++
T Consensus       375 ~L~~L~Ls~N~l~~~l~~~~~~~l~------~L~~L~Ls~N~l~~~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~  445 (520)
T 2z7x_B          375 SLQQLDISQNSVSYDEKKGDCSWTK------SLLSLNMSSNILTDTIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEA  445 (520)
T ss_dssp             TCCEEECCSSCCBCCGGGCSCCCCT------TCCEEECCSSCCCGGGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTT
T ss_pred             CCCEEECCCCcCCcccccchhccCc------cCCEEECcCCCCCcchhhhhc--ccCCEEECCCCccc-ccchhhhcCCC
Confidence            8888888888887656543 33333      677777777777665555443  56666666666665 55555556666


Q ss_pred             CcEEECCCCcCccccCcccCCCCCCcEEeCCCCccccc
Q 036117          517 LTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGV  554 (641)
Q Consensus       517 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~  554 (641)
                      |++|++++|++++..+..+..+++|++|++++|++++.
T Consensus       446 L~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~  483 (520)
T 2z7x_B          446 LQELNVASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCS  483 (520)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred             CCEEECCCCcCCccCHHHhccCCcccEEECcCCCCccc
Confidence            66666666666532222355566666666666665543

>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*

Probab=100.00  E-value=1e-42  Score=385.63  Aligned_cols=502  Identities=19%  Similarity=0.149  Sum_probs=402.4

Q ss_pred             CCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEeccccCCCCCCcccCCCCCCCEEEc
Q 036117          112 TKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWL  191 (641)
Q Consensus       112 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l  191 (641)
                      +.+++|||++|.+++..+.+|.++++|++|+|++|++++..+.+|.++++|++|++++|++++..+..|.++++|++|++
T Consensus        52 ~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~L  131 (635)
T 4g8a_A           52 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA  131 (635)
T ss_dssp             TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEEC
T ss_pred             cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEEC
Confidence            47999999999999777788999999999999999999888889999999999999999999999999999999999999


Q ss_pred             CCCCCCCCch-hhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCcccccCCcccCCCCC----CCEEEcCCC
Q 036117          192 DYNLLEKFPS-FIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPK----LRHLKLGQN  266 (641)
Q Consensus       192 ~~~~~~~l~~-~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~----L~~L~L~~~  266 (641)
                      ++|.+..++. .++++++|++|++++|.+.+......+..+++|++|++++|.+++..+..+..+.+    ...++++.|
T Consensus       132 s~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n  211 (635)
T 4g8a_A          132 VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLN  211 (635)
T ss_dssp             TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTC
T ss_pred             CCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccC
Confidence            9999988876 58999999999999999875433455688999999999999999877777765443    447889999


Q ss_pred             cCCccCCcccCCCCcccEeeeeccccccc-CccccCCCCCCCeeeccCccC------CCCCCcCCCCCCCCCEEEccCcc
Q 036117          267 KLTGTIPDEIGLLSNLEILEFHENLFHGL-IPSSLGNLRRLQRLNLKSAGL------NSSIPKELGFCANLTFLELSINN  339 (641)
Q Consensus       267 ~l~~~~~~~l~~~~~L~~L~l~~n~~~~~-~~~~l~~l~~L~~L~l~~~~~------~~~~~~~l~~~~~L~~L~l~~n~  339 (641)
                      .+....+. ......++.+++.+|..... .+..+..+..++...+..+..      .......+.....+...++..+.
T Consensus       212 ~l~~i~~~-~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~  290 (635)
T 4g8a_A          212 PMNFIQPG-AFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAY  290 (635)
T ss_dssp             CCCEECTT-TTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEEC
T ss_pred             cccccCcc-cccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhh
Confidence            88854443 44455678888888765432 234566677777666543322      12222334444556666665543


Q ss_pred             ccc---cCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCchhhhhCCCCCC
Q 036117          340 LTG---SLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLF  416 (641)
Q Consensus       340 l~~---~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~  416 (641)
                      ...   ..+..+.....++.+.+.++.+..+               ..+.....++.|++.+|.+.+..+   ..++.|+
T Consensus       291 ~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~---------------~~~~~~~~L~~L~l~~~~~~~~~~---~~l~~L~  352 (635)
T 4g8a_A          291 LDYYLDGIIDLFNCLTNVSSFSLVSVTIERV---------------KDFSYNFGWQHLELVNCKFGQFPT---LKLKSLK  352 (635)
T ss_dssp             CCSCEEECTTTTGGGTTCSEEEEESCEEEEC---------------GGGGSCCCCSEEEEESCEESSCCC---CBCTTCC
T ss_pred             hcccccchhhhhhhhcccccccccccccccc---------------cccccchhhhhhhcccccccCcCc---ccchhhh
Confidence            332   2334455667777777666654433               234456789999999998875543   3467899


Q ss_pred             eEecccCcCCccCcccccCCCCCCEEEccCCcCcc--cCCcchhcCCCCCCCCCccEEEccCCcccccCCccccCCCCCc
Q 036117          417 DLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTG--TLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLI  494 (641)
Q Consensus       417 ~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~--~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~  494 (641)
                      .+++.+|.....  .....+++|+.+++++|.+..  ..+.......      +|+++++..+.... ++..+..++.|+
T Consensus       353 ~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~------~L~~L~~~~~~~~~-~~~~~~~l~~L~  423 (635)
T 4g8a_A          353 RLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTI------SLKYLDLSFNGVIT-MSSNFLGLEQLE  423 (635)
T ss_dssp             EEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCS------CCCEEECCSCSEEE-ECSCCTTCTTCC
T ss_pred             hcccccccCCCC--cccccccccccchhhccccccccccccchhhhh------hhhhhhcccccccc-cccccccccccc
Confidence            999999987643  234578999999999998853  4455555555      89999999998764 456678899999


Q ss_pred             eEeccCCcccCCCc-cccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcc-cccCChhhhcCCCCCEEeCcC
Q 036117          495 YLTANVNKLVGPIP-ESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQL-SGVLTSNWGKCTNLSNFRISG  572 (641)
Q Consensus       495 ~L~l~~n~~~~~~~-~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~-~~~~~~~~~~l~~L~~L~L~~  572 (641)
                      .+++..++.....+ ..+..+++++.++++.|.+.+..+..+..++.++.|++++|++ .+..|..+..+++|++|+|++
T Consensus       424 ~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~  503 (635)
T 4g8a_A          424 HLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQ  503 (635)
T ss_dssp             EEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTT
T ss_pred             chhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECCC
Confidence            99999998876555 4578899999999999999999999999999999999999984 456788999999999999999


Q ss_pred             CcCcccCCccccCCCCCCEEeCCCCcCcccCCccccCCCCCCEEeCcCCCCcccCcccccCC-CCCcCCC
Q 036117          573 NRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIPAEIGKL-SRLQYLD  641 (641)
Q Consensus       573 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~~~L~~l~l~~n~l~~~~p~~~~~l-~~L~~l~  641 (641)
                      |++++..|..|+++++|++|+|++|++++..|..+..+++|++|++++|++++..|..+..+ ++|+.||
T Consensus       504 N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~  573 (635)
T 4g8a_A          504 CQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLN  573 (635)
T ss_dssp             SCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEE
T ss_pred             CccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEE
Confidence            99999999999999999999999999997777888999999999999999999999999988 6788764

>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}

Probab=100.00  E-value=1.7e-43  Score=394.44  Aligned_cols=421  Identities=21%  Similarity=0.257  Sum_probs=347.7

Q ss_pred             CCCCEEEcCCCCC-CCCchhhcCCCCCcEEEe-eCCcCCCCCChhhh---------------------------------
Q 036117          184 ASLTDLWLDYNLL-EKFPSFIAECSKLMFLDL-SDNLIMGHIPIEQL---------------------------------  228 (641)
Q Consensus       184 ~~L~~L~l~~~~~-~~l~~~l~~~~~L~~L~l-~~~~~~~~~~~~~l---------------------------------  228 (641)
                      ..++.|+|+++.+ +.+|..++++++|++|++ ++|.+.|..+....                                 
T Consensus       323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~  402 (876)
T 4ecn_A          323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD  402 (876)
T ss_dssp             SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred             CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence            4688888888888 678888888999999999 77766544221100                                 


Q ss_pred             -----------------cCCCCCcEEeccC--CcccccCCcccCCCCCCCEEEcCCCcCCc-----------------cC
Q 036117          229 -----------------THLENLEYLNLTK--NSFEGEIPREIKTFPKLRHLKLGQNKLTG-----------------TI  272 (641)
Q Consensus       229 -----------------~~l~~L~~L~l~~--n~~~~~~~~~l~~l~~L~~L~L~~~~l~~-----------------~~  272 (641)
                                       .....++.+.+..  |.+++ +|..+.++++|++|++++|.+++                 .+
T Consensus       403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i  481 (876)
T 4ecn_A          403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE  481 (876)
T ss_dssp             HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred             HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence                             1112233344433  77876 89999999999999999999998                 38


Q ss_pred             CcccC--CCCcccEeeeecccccccCccccCCCCCCCeeeccCcc-CCC-CCCcCCC-------CCCCCCEEEccCcccc
Q 036117          273 PDEIG--LLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAG-LNS-SIPKELG-------FCANLTFLELSINNLT  341 (641)
Q Consensus       273 ~~~l~--~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~-~~~-~~~~~l~-------~~~~L~~L~l~~n~l~  341 (641)
                      |..++  .+++|++|++++|.+.+.+|..+.++++|+.|++++|. +.+ .+|..+.       .+++|+.|++++|+++
T Consensus       482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~  561 (876)
T 4ecn_A          482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE  561 (876)
T ss_dssp             TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred             ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence            88887  99999999999999999999999999999999999998 877 6665444       4569999999999999


Q ss_pred             ccCch--hhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCchhhhhCCCC-CCeE
Q 036117          342 GSLPL--SLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTN-LFDL  418 (641)
Q Consensus       342 ~~~~~--~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~-L~~L  418 (641)
                       .+|.  .+..+++|+.|++++|.++              .+| .++.+++|+.|++++|+++ .+|..+..+++ |+.|
T Consensus       562 -~ip~~~~l~~L~~L~~L~Ls~N~l~--------------~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L  624 (876)
T 4ecn_A          562 -EFPASASLQKMVKLGLLDCVHNKVR--------------HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGL  624 (876)
T ss_dssp             -BCCCHHHHTTCTTCCEEECTTSCCC--------------BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEE
T ss_pred             -ccCChhhhhcCCCCCEEECCCCCcc--------------cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEE
Confidence             8888  8999999999997777654              345 7888999999999999999 88888999999 9999


Q ss_pred             ecccCcCCccCcccccCCCC--CCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCcccc-CCCCCce
Q 036117          419 QLANNFFNGSIPSTIGNLSS--LVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGIC-RGGNLIY  495 (641)
Q Consensus       419 ~l~~n~l~~~~~~~l~~l~~--L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~-~~~~L~~  495 (641)
                      ++++|.+. .+|..+..++.  |++|++++|.+.+.+|....... ....++|+.|++++|.++ .+|..+. .+++|+.
T Consensus       625 ~Ls~N~L~-~lp~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~-~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~  701 (876)
T 4ecn_A          625 GFSHNKLK-YIPNIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMD-DYKGINASTVTLSYNEIQ-KFPTELFATGSPIST  701 (876)
T ss_dssp             ECCSSCCC-SCCSCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTT-TCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSE
T ss_pred             ECcCCCCC-cCchhhhccccCCCCEEECcCCcCCCccccchhhhc-cccCCCcCEEEccCCcCC-ccCHHHHccCCCCCE
Confidence            99999998 78887777654  99999999999987664322211 112247999999999998 6777665 7899999


Q ss_pred             EeccCCcccCCCcccccc--------CCCCcEEECCCCcCccccCcccC--CCCCCcEEeCCCCcccccCChhhhcCCCC
Q 036117          496 LTANVNKLVGPIPESLWN--------CTGLTRVRLEQNRLDGDITNALG--IYPDLQYIDLGDNQLSGVLTSNWGKCTNL  565 (641)
Q Consensus       496 L~l~~n~~~~~~~~~l~~--------~~~L~~L~l~~n~l~~~~~~~~~--~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L  565 (641)
                      |++++|++. .+|..+..        |++|+.|++++|++. .+|..+.  .+++|+.|+|++|++++ +|..+..+++|
T Consensus       702 L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L  778 (876)
T 4ecn_A          702 IILSNNLMT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQL  778 (876)
T ss_dssp             EECCSCCCS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTC
T ss_pred             EECCCCcCC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCC
Confidence            999999998 66654433        338999999999999 6788876  89999999999999997 78889999999


Q ss_pred             CEEeCcC------CcCcccCCccccCCCCCCEEeCCCCcCcccCCccccCCCCCCEEeCcCCCCcccCcccc
Q 036117          566 SNFRISG------NRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIPAEI  631 (641)
Q Consensus       566 ~~L~L~~------n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~~~L~~l~l~~n~l~~~~p~~~  631 (641)
                      +.|+|++      |++.+.+|..+.++++|+.|+|++|++ +.+|..+.  ++|+.|+|++|++....+..+
T Consensus       779 ~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~~~~~  847 (876)
T 4ecn_A          779 KAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISIDVTSV  847 (876)
T ss_dssp             CEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEECGGG
T ss_pred             CEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccChHHc
Confidence            9999977      788889999999999999999999999 69998866  699999999999876554444

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=2.3e-41  Score=367.98  Aligned_cols=457  Identities=21%  Similarity=0.221  Sum_probs=296.5

Q ss_pred             CCCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEE
Q 036117           87 FPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLR  166 (641)
Q Consensus        87 l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~  166 (641)
                      +...++++++++++++ +|..+.  ++|++|++++|.+++..|..|+++++|++|++++|.+++..|..|.++++|++|+
T Consensus        30 ~~~~~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  106 (562)
T 3a79_B           30 NELESMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD  106 (562)
T ss_dssp             ---CCEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred             cCCCcEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence            3445899999999984 676554  8899999999999987778899999999999999999988888999999999999


Q ss_pred             eccccCCCCCCcccCCCCCCCEEEcCCCCCCCC--chhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCC--cEEeccCC
Q 036117          167 IGANYLEDPDPVKFKGMASLTDLWLDYNLLEKF--PSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENL--EYLNLTKN  242 (641)
Q Consensus       167 l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l--~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L--~~L~l~~n  242 (641)
                      +++|.++.++..   .+++|++|++++|.+..+  |..+.++++|++|++++|.+.+. .   +..+++|  ++|++++|
T Consensus       107 Ls~N~l~~lp~~---~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~-~---~~~l~~L~L~~L~L~~n  179 (562)
T 3a79_B          107 VSHNRLQNISCC---PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL-D---LLPVAHLHLSCILLDLV  179 (562)
T ss_dssp             CTTSCCCEECSC---CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT-T---TGGGTTSCEEEEEEEES
T ss_pred             CCCCcCCccCcc---ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC-c---hhhhhhceeeEEEeecc
Confidence            999998865544   788899999999988665  46788888888888888887642 2   2344444  88888888


Q ss_pred             cc--cccCCcccCCCC-CCCEEEcCCCcCCccCCc-ccCCCCcccEeeeeccccc----ccCccccCCCCCCCeeeccCc
Q 036117          243 SF--EGEIPREIKTFP-KLRHLKLGQNKLTGTIPD-EIGLLSNLEILEFHENLFH----GLIPSSLGNLRRLQRLNLKSA  314 (641)
Q Consensus       243 ~~--~~~~~~~l~~l~-~L~~L~L~~~~l~~~~~~-~l~~~~~L~~L~l~~n~~~----~~~~~~l~~l~~L~~L~l~~~  314 (641)
                      .+  ++..|..+..+. ..-.+++++|.+.+.++. .+..+++|+.+++++|...    ......+..++          
T Consensus       180 ~l~~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~----------  249 (562)
T 3a79_B          180 SYHIKGGETESLQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGP----------  249 (562)
T ss_dssp             SCCCCSSSCCEEEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCS----------
T ss_pred             cccccccCcccccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccC----------
Confidence            77  666666665543 111445666666554433 2345666666666665311    00111233333          


Q ss_pred             cCCCCCCcCCCCCCCCCEEEccCccccccCchh---hhcCCCCCeEeCCcccccccceeecccccccccCCcCC-----C
Q 036117          315 GLNSSIPKELGFCANLTFLELSINNLTGSLPLS---LASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEI-----G  386 (641)
Q Consensus       315 ~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~---l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l-----~  386 (641)
                                    +|+.++++++.+.+.....   ....++|++|+             +++|.+.|.+|..+     .
T Consensus       250 --------------~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~-------------l~~n~l~~~ip~~~~~~~~~  302 (562)
T 3a79_B          250 --------------TLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLN-------------IYNLTITERIDREEFTYSET  302 (562)
T ss_dssp             --------------SCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEE-------------EEEEEECSCCCCCCCCCCSC
T ss_pred             --------------cceEEEecCCcCcHHHHHHHHHhhhcccccEEE-------------EeccEeeccccchhhhcccc
Confidence                          4444444444333211110   01112333333             44444444455444     4


Q ss_pred             CCCCCCEEEccCCcCcCCch-hhhh---CCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCC
Q 036117          387 LLPKLEYLYLFDNKFSGPIP-QQIG---NLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKS  462 (641)
Q Consensus       387 ~~~~L~~L~L~~n~l~~~~~-~~~~---~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~  462 (641)
                      .++.|+.+++..+.+  .+| .++.   ...+|+.|++++|.+....  ....+++|++|++++|.+++.+|..+..++ 
T Consensus       303 ~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-  377 (562)
T 3a79_B          303 ALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLK-  377 (562)
T ss_dssp             SCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCS-
T ss_pred             cchheehhhccccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccC-
Confidence            445555555555555  222 2222   2256777777777765221  124667777777777777766666666665 


Q ss_pred             CCCCCCccEEEccCCcccc--cCCccccCCCCCceEeccCCcccCCCcc-ccccCCCCcEEECCCCcCccccCcccCCCC
Q 036117          463 DFGPRFLRNVSFSYNNFSG--KLPPGICRGGNLIYLTANVNKLVGPIPE-SLWNCTGLTRVRLEQNRLDGDITNALGIYP  539 (641)
Q Consensus       463 ~~~~~~L~~L~ls~n~l~~--~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~  539 (641)
                           +|++|++++|++++  .+|..+..+++|+.|++++|++.+.+|. .+..+++|++|++++|++++..+..+.  +
T Consensus       378 -----~L~~L~L~~N~l~~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~--~  450 (562)
T 3a79_B          378 -----RLQTLILQRNGLKNFFKVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCLP--P  450 (562)
T ss_dssp             -----SCCEEECCSSCCCBTTHHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSCC--T
T ss_pred             -----CCCEEECCCCCcCCcccchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhhc--C
Confidence                 67777777777764  2344566777777777777777764543 466677777777777777766655443  6


Q ss_pred             CCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCcc-ccCCCCCCEEeCCCCcCcccCC
Q 036117          540 DLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAE-LGNLTYLQNLDIFDNQLTGKIP  604 (641)
Q Consensus       540 ~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~ip  604 (641)
                      +|++|++++|+++ .+|..+..+++|++|++++|+++ .+|.. +..+++|+.|++++|++.+..|
T Consensus       451 ~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~  514 (562)
T 3a79_B          451 KVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCP  514 (562)
T ss_dssp             TCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHH
T ss_pred             cCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcc
Confidence            7777777777777 45555557777777777777777 45544 7777777777777777776544

>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}

Probab=100.00  E-value=2.6e-41  Score=367.52  Aligned_cols=453  Identities=19%  Similarity=0.150  Sum_probs=320.3

Q ss_pred             EEEEEcCCCCCccccCCcCCCCCCCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcc
Q 036117           65 ISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLY  144 (641)
Q Consensus        65 v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~  144 (641)
                      .+.++++++++++ +| ..+.  ++|++|++++|.+.+..+..|..+++|++|++++|.+++..|..|+++++|++|+++
T Consensus        33 ~~~l~ls~~~L~~-ip-~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls  108 (562)
T 3a79_B           33 ESMVDYSNRNLTH-VP-KDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVS  108 (562)
T ss_dssp             CCEEECTTSCCCS-CC-TTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECT
T ss_pred             CcEEEcCCCCCcc-CC-CCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECC
Confidence            3889999999984 66 3343  899999999999998888899999999999999999998889999999999999999


Q ss_pred             cccCCCCCChhccCCCCCcEEEeccccCCCCC-CcccCCCCCCCEEEcCCCCCCCCchhhcCCCCC--cEEEeeCCcC--
Q 036117          145 NNSLTGQIPHQLSNLQNAWLLRIGANYLEDPD-PVKFKGMASLTDLWLDYNLLEKFPSFIAECSKL--MFLDLSDNLI--  219 (641)
Q Consensus       145 ~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~~~~~~l~~~l~~~~~L--~~L~l~~~~~--  219 (641)
                      +|.++ .+|..  .+++|++|++++|.+.+.. +..|.++++|++|++++|.+...  .+..+++|  ++|++++|.+  
T Consensus       109 ~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~  183 (562)
T 3a79_B          109 HNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHI  183 (562)
T ss_dssp             TSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCC
T ss_pred             CCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccccc
Confidence            99998 45655  8999999999999999865 57899999999999999998653  35555666  9999999998  


Q ss_pred             CCCCChhhhcCCC-CCcEEeccCCcccccCCc-ccCCCCCCCEEEcCCCcCC----ccCCcccCCCCcccEeeeeccccc
Q 036117          220 MGHIPIEQLTHLE-NLEYLNLTKNSFEGEIPR-EIKTFPKLRHLKLGQNKLT----GTIPDEIGLLSNLEILEFHENLFH  293 (641)
Q Consensus       220 ~~~~~~~~l~~l~-~L~~L~l~~n~~~~~~~~-~l~~l~~L~~L~L~~~~l~----~~~~~~l~~~~~L~~L~l~~n~~~  293 (641)
                      .+..+.. +..+. ..-.+++++|.+.+.++. .+..+++|+.+++++|...    ......+..++.++.+++.++.+.
T Consensus       184 ~~~~~~~-l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~  262 (562)
T 3a79_B          184 KGGETES-LQIPNTTVLHLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETT  262 (562)
T ss_dssp             CSSSCCE-EEECCEEEEEEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEEC
T ss_pred             cccCccc-ccccCcceEEEEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCc
Confidence            6555533 34433 122567788887765543 4567889999999998521    012234677889999998888765


Q ss_pred             ccC----ccccCCCCCCCeeeccCccCCCCCCcCC-----CCCCCCCEEEccCccccccCc-hhhh---cCCCCCeEeCC
Q 036117          294 GLI----PSSLGNLRRLQRLNLKSAGLNSSIPKEL-----GFCANLTFLELSINNLTGSLP-LSLA---SLRQISELGIS  360 (641)
Q Consensus       294 ~~~----~~~l~~l~~L~~L~l~~~~~~~~~~~~l-----~~~~~L~~L~l~~n~l~~~~~-~~l~---~~~~L~~L~l~  360 (641)
                      +..    +..+ ..++|++|++++|.+.+.+|..+     ..++.|+.+++..+.+  .+| ..+.   ...+++.|+++
T Consensus       263 ~~~~~~~~~~~-~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~--~~p~~~~~~~~~~~~L~~L~l~  339 (562)
T 3a79_B          263 WKCSVKLFQFF-WPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVF--LFSKEALYSVFAEMNIKMLSIS  339 (562)
T ss_dssp             HHHHHHHHHHH-TTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCC--SSCHHHHHHHHHTCCCSEEEEE
T ss_pred             HHHHHHHHHhh-hcccccEEEEeccEeeccccchhhhcccccchheehhhccccee--ecChhhhhhhhccCcceEEEcc
Confidence            432    1122 23589999999999887777766     5555666666666655  334 2222   23567778776


Q ss_pred             cccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCc--cCcccccCCCC
Q 036117          361 NNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNG--SIPSTIGNLSS  438 (641)
Q Consensus       361 ~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~  438 (641)
                      +|.+...               .....+++|++|++++|++++..|..+..+++|++|++++|.+++  .+|..+..+++
T Consensus       340 ~n~~~~~---------------~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l~~  404 (562)
T 3a79_B          340 DTPFIHM---------------VCPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNMSS  404 (562)
T ss_dssp             SSCCCCC---------------CCCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTCTT
T ss_pred             CCCcccc---------------cCccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCCCC
Confidence            6665432               112467788888888888887778888888888888888888875  33456777888


Q ss_pred             CCEEEccCCcCcccCCcc-hhcCCCCCCCCCccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCC
Q 036117          439 LVKLSLSSNQLTGTLPPE-IGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGL  517 (641)
Q Consensus       439 L~~L~ls~n~l~~~~~~~-~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L  517 (641)
                      |++|++++|.+++.+|.. +..+.      +|++|++++|++++.+|..+.  +.|+.|++++|++. .+|..+..+++|
T Consensus       405 L~~L~l~~N~l~~~~~~~~~~~l~------~L~~L~l~~n~l~~~~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L  475 (562)
T 3a79_B          405 LETLDVSLNSLNSHAYDRTCAWAE------SILVLNLSSNMLTGSVFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQAL  475 (562)
T ss_dssp             CCEEECTTSCCBSCCSSCCCCCCT------TCCEEECCSSCCCGGGGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCC
T ss_pred             CCEEECCCCcCCCccChhhhcCcc------cCCEEECCCCCCCcchhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCC
Confidence            888888888877655543 33333      677777777776655544332  45666666666555 444444455555


Q ss_pred             cEEECCCCcCccccCcccCCCCCCcEEeCCCCccccc
Q 036117          518 TRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGV  554 (641)
Q Consensus       518 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~  554 (641)
                      ++|++++|++++..+..+..+++|+.|++++|++.+.
T Consensus       476 ~~L~L~~N~l~~l~~~~~~~l~~L~~L~l~~N~~~c~  512 (562)
T 3a79_B          476 QELNVASNQLKSVPDGVFDRLTSLQYIWLHDNPWDCT  512 (562)
T ss_dssp             SEEECCSSCCCCCCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred             CEEECCCCCCCCCCHHHHhcCCCCCEEEecCCCcCCC
Confidence            5555555555532222255555555555555555543

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=5.4e-40  Score=345.10  Aligned_cols=423  Identities=22%  Similarity=0.243  Sum_probs=170.7

Q ss_pred             CCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEeccccCCCCCCcccCCCCCCCEEEc
Q 036117          112 TKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWL  191 (641)
Q Consensus       112 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l  191 (641)
                      ++|++|++++|.+ +.+|.+++++++|++|++++|.+.+.+|..++++++|+.+++.+|..           .++++|++
T Consensus        11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L~l   78 (454)
T 1jl5_A           11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHELEL   78 (454)
T ss_dssp             ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEEEC
T ss_pred             ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEEEe
Confidence            4444455554444 34444455555555555555554444454444444443333322211           22333333


Q ss_pred             CCCCCCCCchhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCcccccCCcccCCCCCCCEEEcCCCcCCcc
Q 036117          192 DYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGT  271 (641)
Q Consensus       192 ~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~  271 (641)
                      ++|.+..+|..   .++|++|++++|.+.+ ++.    ..++|++|++++|.+++ ++..   .++|++|++++|.+++ 
T Consensus        79 ~~~~l~~lp~~---~~~L~~L~l~~n~l~~-lp~----~~~~L~~L~l~~n~l~~-l~~~---~~~L~~L~L~~n~l~~-  145 (454)
T 1jl5_A           79 NNLGLSSLPEL---PPHLESLVASCNSLTE-LPE----LPQSLKSLLVDNNNLKA-LSDL---PPLLEYLGVSNNQLEK-  145 (454)
T ss_dssp             TTSCCSCCCSC---CTTCSEEECCSSCCSS-CCC----CCTTCCEEECCSSCCSC-CCSC---CTTCCEEECCSSCCSS-
T ss_pred             cCCccccCCCC---cCCCCEEEccCCcCCc-ccc----ccCCCcEEECCCCccCc-ccCC---CCCCCEEECcCCCCCC-
Confidence            33333333321   1344444444444442 221    12344444444444432 1110   1344555555554443 


Q ss_pred             CCcccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCccCCCCCCcCCCCCCCCCEEEccCccccccCchhhhcC
Q 036117          272 IPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASL  351 (641)
Q Consensus       272 ~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~  351 (641)
                      +| .++.+++|++|++++|++.+ +|..   .++|++|++++|.+.+ +| .+..+++|++|++++|++++ +|..   .
T Consensus       146 lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~---~  214 (454)
T 1jl5_A          146 LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL---P  214 (454)
T ss_dssp             CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC---C
T ss_pred             Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC---c
Confidence            33 24445555555555554443 2221   1345555555555544 22 34555555555555555553 2221   1


Q ss_pred             CCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcc
Q 036117          352 RQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPS  431 (641)
Q Consensus       352 ~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~  431 (641)
                      ++|++|++++|.++.              +| .++.+++|++|++++|++++ +|.   .+++|+.|++++|.+.+ +|.
T Consensus       215 ~~L~~L~l~~n~l~~--------------lp-~~~~l~~L~~L~l~~N~l~~-l~~---~~~~L~~L~l~~N~l~~-l~~  274 (454)
T 1jl5_A          215 LSLESIVAGNNILEE--------------LP-ELQNLPFLTTIYADNNLLKT-LPD---LPPSLEALNVRDNYLTD-LPE  274 (454)
T ss_dssp             TTCCEEECCSSCCSS--------------CC-CCTTCTTCCEEECCSSCCSS-CCS---CCTTCCEEECCSSCCSC-CCC
T ss_pred             CcccEEECcCCcCCc--------------cc-ccCCCCCCCEEECCCCcCCc-ccc---cccccCEEECCCCcccc-cCc
Confidence            345555544443321              22 24555666666666666653 222   13566666666666653 333


Q ss_pred             cccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccccCC-CCCceEeccCCcccCCCccc
Q 036117          432 TIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRG-GNLIYLTANVNKLVGPIPES  510 (641)
Q Consensus       432 ~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~-~~L~~L~l~~n~~~~~~~~~  510 (641)
                      .   .++|++|++++|.+++. |..         +++|++|++++|++++ ++    .. ++|+.|++++|++.+ +|..
T Consensus       275 ~---~~~L~~L~ls~N~l~~l-~~~---------~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~  335 (454)
T 1jl5_A          275 L---PQSLTFLDVSENIFSGL-SEL---------PPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL  335 (454)
T ss_dssp             C---CTTCCEEECCSSCCSEE-SCC---------CTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC
T ss_pred             c---cCcCCEEECcCCccCcc-cCc---------CCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc
Confidence            2   25666677766666541 110         0156777777776653 11    22 467777777777664 4443


Q ss_pred             cccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccc--cCChhhhcCCCCCEEeCcCCcCcccCCccccCCCC
Q 036117          511 LWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSG--VLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTY  588 (641)
Q Consensus       511 l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~--~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~  588 (641)
                         +++|++|++++|++.+ +|.   .+++|++|++++|++++  .+|..++.      |  +.|.+.+.+|..   +++
T Consensus       336 ---~~~L~~L~L~~N~l~~-lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~------L--~~n~~~~~i~~~---~~~  397 (454)
T 1jl5_A          336 ---PPRLERLIASFNHLAE-VPE---LPQNLKQLHVEYNPLREFPDIPESVED------L--RMNSHLAEVPEL---PQN  397 (454)
T ss_dssp             ---CTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSSCCCCCTTCCE------E--ECCC--------------
T ss_pred             ---CCcCCEEECCCCcccc-ccc---hhhhccEEECCCCCCCcCCCChHHHHh------h--hhcccccccccc---cCc
Confidence               4677777777777773 444   36778888888887776  55554432      2  345566666653   477


Q ss_pred             CCEEeCCCCcCcc--cCCccccCCCCCCEEeCcCCCCcccCcccccC
Q 036117          589 LQNLDIFDNQLTG--KIPAQLFRSSFLIRLNLRRNQLSDKIPAEIGK  633 (641)
Q Consensus       589 L~~L~L~~n~l~~--~ip~~l~~~~~L~~l~l~~n~l~~~~p~~~~~  633 (641)
                      |++|++++|++++  .+|.+      ++.|.+.+|.+.+.+|.....
T Consensus       398 L~~L~ls~N~l~~~~~iP~s------l~~L~~~~~~~~~~~~~~~~~  438 (454)
T 1jl5_A          398 LKQLHVETNPLREFPDIPES------VEDLRMNSERVVDPYEFAHET  438 (454)
T ss_dssp             -----------------------------------------------
T ss_pred             CCEEECCCCcCCccccchhh------HhheeCcCcccCCccccCHHH
Confidence            8888999998886  56643      566778888888777755443

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=3.1e-39  Score=342.53  Aligned_cols=390  Identities=19%  Similarity=0.208  Sum_probs=245.7

Q ss_pred             EEEcCCCCCCCCchhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCcccccC-CcccCCCCCCCEEEcCCC
Q 036117          188 DLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEI-PREIKTFPKLRHLKLGQN  266 (641)
Q Consensus       188 ~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~L~~~  266 (641)
                      .++.+++.+..+|. +  .++|++|++++|.+.+ ++...+.++++|++|++++|.+.+.+ +..|..+++|++|++++|
T Consensus        14 ~~~c~~~~l~~lp~-l--~~~l~~L~Ls~n~i~~-~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n   89 (455)
T 3v47_A           14 NAICINRGLHQVPE-L--PAHVNYVDLSLNSIAE-LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYN   89 (455)
T ss_dssp             EEECCSSCCSSCCC-C--CTTCCEEECCSSCCCE-ECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTC
T ss_pred             ccCcCCCCcccCCC-C--CCccCEEEecCCccCc-CChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCC
Confidence            34444444444444 1  1455555555555542 22233355555555555555554332 344555566666666666


Q ss_pred             cCCccCCcccCCCCcccEeeeecccccccCccc--cCCCCCCCeeeccCccCCCCCCcC-CCCCCCCCEEEccCcccccc
Q 036117          267 KLTGTIPDEIGLLSNLEILEFHENLFHGLIPSS--LGNLRRLQRLNLKSAGLNSSIPKE-LGFCANLTFLELSINNLTGS  343 (641)
Q Consensus       267 ~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~~~-l~~~~~L~~L~l~~n~l~~~  343 (641)
                      .+.+..|..++.+++|++|++++|.+.+..+..  +..+++|++|++++|.+.+..|.. +..+++|++|++++|++.+.
T Consensus        90 ~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~  169 (455)
T 3v47_A           90 QFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSI  169 (455)
T ss_dssp             TTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCC
T ss_pred             ccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccccc
Confidence            655555555555666666666666555433332  555666666666666665554443 55666666666666666665


Q ss_pred             CchhhhcC--CCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCchhhhhCC---CCCCeE
Q 036117          344 LPLSLASL--RQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNL---TNLFDL  418 (641)
Q Consensus       344 ~~~~l~~~--~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l---~~L~~L  418 (641)
                      .+..+..+  ..++.|++++|.+..+....+..     .....+..+++|++|++++|++++..|..+...   ++|+.|
T Consensus       170 ~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~-----~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L  244 (455)
T 3v47_A          170 CEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW-----EKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSL  244 (455)
T ss_dssp             CTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTH-----HHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEE
T ss_pred             ChhhhhccccccccccccccCcccccchhhccc-----cccccccccceeeeEecCCCcccccchhhhhccccccceeeE
Confidence            55555544  45556665555544331111100     001123345678888888888877777666543   677777


Q ss_pred             ecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccccCCCCCceEec
Q 036117          419 QLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTA  498 (641)
Q Consensus       419 ~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l  498 (641)
                      ++++|...+...              ..+.+.+..+..+..+.    .++|++|++++|.+++..|..+..+++|+.|++
T Consensus       245 ~l~~~~~~~~~~--------------~~~~~~~~~~~~~~~~~----~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  306 (455)
T 3v47_A          245 ILSNSYNMGSSF--------------GHTNFKDPDNFTFKGLE----ASGVKTCDLSKSKIFALLKSVFSHFTDLEQLTL  306 (455)
T ss_dssp             ECTTCTTTSCCT--------------TCCSSCCCCTTTTGGGT----TSCCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred             eecccccccccc--------------chhhhccCccccccccc----ccCceEEEecCccccccchhhcccCCCCCEEEC
Confidence            777776553211              11111111111111110    126888888888888777888888888888888


Q ss_pred             cCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCccc
Q 036117          499 NVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGG  578 (641)
Q Consensus       499 ~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  578 (641)
                      ++|++.+..|..+.++++|++|++++|.+.+..+..++.+++|++|++++|++++..|..+..+++|++|++++|++++.
T Consensus       307 s~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~  386 (455)
T 3v47_A          307 AQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQLKSV  386 (455)
T ss_dssp             TTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCC
T ss_pred             CCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCccccC
Confidence            88888877777888888888888888888877778888888888888888888888888888888888888888888866


Q ss_pred             CCccccCCCCCCEEeCCCCcCcccCC
Q 036117          579 IPAELGNLTYLQNLDIFDNQLTGKIP  604 (641)
Q Consensus       579 ~p~~l~~l~~L~~L~L~~n~l~~~ip  604 (641)
                      .+..++.+++|++|++++|++++.+|
T Consensus       387 ~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          387 PDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             CTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             CHhHhccCCcccEEEccCCCcccCCC
Confidence            66677888888888888888888777

>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*

Probab=100.00  E-value=5.3e-39  Score=340.71  Aligned_cols=381  Identities=19%  Similarity=0.182  Sum_probs=260.4

Q ss_pred             cEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCcccccCCcccCCCCCCCEEEcCCCcCCccC-CcccCCCCcccEeeee
Q 036117          210 MFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTI-PDEIGLLSNLEILEFH  288 (641)
Q Consensus       210 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~-~~~l~~~~~L~~L~l~  288 (641)
                      +.++.+++.++ .+|.    -.+++++|++++|.+++..|..+..+++|++|++++|.+.+.+ +..+..+++|++|+++
T Consensus        13 ~~~~c~~~~l~-~lp~----l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls   87 (455)
T 3v47_A           13 YNAICINRGLH-QVPE----LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLD   87 (455)
T ss_dssp             TEEECCSSCCS-SCCC----CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECT
T ss_pred             cccCcCCCCcc-cCCC----CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEEeCC
Confidence            34555666555 4443    2256777777777777666666777777777777777665433 3456667777777777


Q ss_pred             cccccccCccccCCCCCCCeeeccCccCCCCCCcC--CCCCCCCCEEEccCccccccCchh-hhcCCCCCeEeCCccccc
Q 036117          289 ENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKE--LGFCANLTFLELSINNLTGSLPLS-LASLRQISELGISNNQLS  365 (641)
Q Consensus       289 ~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~--l~~~~~L~~L~l~~n~l~~~~~~~-l~~~~~L~~L~l~~n~~~  365 (641)
                      +|.+.+..|..+..+++|++|++++|.+.+..+..  +..+++|++|++++|++++..|.. +..+++|++|++++|.+.
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~  167 (455)
T 3v47_A           88 YNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVK  167 (455)
T ss_dssp             TCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBS
T ss_pred             CCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCccc
Confidence            77776666666666777777777777665533332  566666666776666666555544 556666666664444433


Q ss_pred             ccceeecccccccccCCcCCCCC--CCCCEEEccCCcCcCCchhhh--------hCCCCCCeEecccCcCCccCcccccC
Q 036117          366 EIISLQLQMNDLSGKLPPEIGLL--PKLEYLYLFDNKFSGPIPQQI--------GNLTNLFDLQLANNFFNGSIPSTIGN  435 (641)
Q Consensus       366 ~l~~l~l~~~~l~~~~~~~l~~~--~~L~~L~L~~n~l~~~~~~~~--------~~l~~L~~L~l~~n~l~~~~~~~l~~  435 (641)
                      .             ..+..+..+  .+|+.|++++|.+.+..+..+        ..+++|++|++++|.+.+..+..+..
T Consensus       168 ~-------------~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~  234 (455)
T 3v47_A          168 S-------------ICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFD  234 (455)
T ss_dssp             C-------------CCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHH
T ss_pred             c-------------cChhhhhccccccccccccccCcccccchhhccccccccccccceeeeEecCCCcccccchhhhhc
Confidence            2             223333322  455666666665554333221        13345555555555555444433322


Q ss_pred             C---CCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCcccc--CCCCCceEeccCCcccCCCccc
Q 036117          436 L---SSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGIC--RGGNLIYLTANVNKLVGPIPES  510 (641)
Q Consensus       436 l---~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~--~~~~L~~L~l~~n~~~~~~~~~  510 (641)
                      .   ++|+.+++++|...+....                    .+.+.+..+..+.  ..++|+.|++++|++.+..|..
T Consensus       235 ~~~~~~L~~L~l~~~~~~~~~~~--------------------~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~  294 (455)
T 3v47_A          235 AIAGTKIQSLILSNSYNMGSSFG--------------------HTNFKDPDNFTFKGLEASGVKTCDLSKSKIFALLKSV  294 (455)
T ss_dssp             HTTTCCEEEEECTTCTTTSCCTT--------------------CCSSCCCCTTTTGGGTTSCCCEEECCSSCCCEECTTT
T ss_pred             cccccceeeEeeccccccccccc--------------------hhhhccCcccccccccccCceEEEecCccccccchhh
Confidence            2   4455555555443322100                    0011111111122  2468999999999999999999


Q ss_pred             cccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCC
Q 036117          511 LWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQ  590 (641)
Q Consensus       511 l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~  590 (641)
                      +..+++|++|++++|++.+..+..++.+++|++|++++|.+++..|..+..+++|++|++++|++++..|..+.++++|+
T Consensus       295 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~  374 (455)
T 3v47_A          295 FSHFTDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLK  374 (455)
T ss_dssp             TTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             cccCCCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhcccccccc
Confidence            99999999999999999998899999999999999999999999899999999999999999999988899999999999


Q ss_pred             EEeCCCCcCcccCCccccCCCCCCEEeCcCCCCcccCc
Q 036117          591 NLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIP  628 (641)
Q Consensus       591 ~L~L~~n~l~~~ip~~l~~~~~L~~l~l~~n~l~~~~p  628 (641)
                      +|++++|++++..+..+..+++|+.|++++|++++.+|
T Consensus       375 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~  412 (455)
T 3v47_A          375 ELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  412 (455)
T ss_dssp             EEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred             EEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence            99999999996445566889999999999999999888

>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A

Probab=100.00  E-value=3.8e-39  Score=338.67  Aligned_cols=426  Identities=24%  Similarity=0.289  Sum_probs=227.6

Q ss_pred             CCCCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEE
Q 036117           86 AFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLL  165 (641)
Q Consensus        86 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L  165 (641)
                      ..++|++|++++|.+ +.+|..++++++|++|++++|.+.+.+|..++.+++|+++++.+|..           .++++|
T Consensus         9 ~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L   76 (454)
T 1jl5_A            9 SNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHEL   76 (454)
T ss_dssp             --------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEE
T ss_pred             ccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEE
Confidence            457899999999999 68999999999999999999999989999999888875555554431           345556


Q ss_pred             EeccccCCCCCCcccCCCCCCCEEEcCCCCCCCCchhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCccc
Q 036117          166 RIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFE  245 (641)
Q Consensus       166 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~  245 (641)
                      ++++|.+++.+.    -.++|++|++++|.+..+|..   .++|++|++++|.+.+ ++.    ..++|++|++++|.++
T Consensus        77 ~l~~~~l~~lp~----~~~~L~~L~l~~n~l~~lp~~---~~~L~~L~l~~n~l~~-l~~----~~~~L~~L~L~~n~l~  144 (454)
T 1jl5_A           77 ELNNLGLSSLPE----LPPHLESLVASCNSLTELPEL---PQSLKSLLVDNNNLKA-LSD----LPPLLEYLGVSNNQLE  144 (454)
T ss_dssp             ECTTSCCSCCCS----CCTTCSEEECCSSCCSSCCCC---CTTCCEEECCSSCCSC-CCS----CCTTCCEEECCSSCCS
T ss_pred             EecCCccccCCC----CcCCCCEEEccCCcCCccccc---cCCCcEEECCCCccCc-ccC----CCCCCCEEECcCCCCC
Confidence            666665554332    124566666666666555542   3566666666666652 221    1256777777777766


Q ss_pred             ccCCcccCCCCCCCEEEcCCCcCCccCCcccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCccCCCCCCcCCC
Q 036117          246 GEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELG  325 (641)
Q Consensus       246 ~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~  325 (641)
                      + +| .+..+++|++|++++|.+++ +|..   .++|++|++++|.+.+ +| .+..+++|++|++++|.+.+ +|..  
T Consensus       145 ~-lp-~~~~l~~L~~L~l~~N~l~~-lp~~---~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~-l~~~--  213 (454)
T 1jl5_A          145 K-LP-ELQNSSFLKIIDVDNNSLKK-LPDL---PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKK-LPDL--  213 (454)
T ss_dssp             S-CC-CCTTCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSS-CCCC--
T ss_pred             C-Cc-ccCCCCCCCEEECCCCcCcc-cCCC---cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCc-CCCC--
Confidence            4 55 46677777777777777663 4432   2467777777777765 33 46677777777777777654 2222  


Q ss_pred             CCCCCCEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCc
Q 036117          326 FCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPI  405 (641)
Q Consensus       326 ~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~  405 (641)
                       .++|++|++++|.+. .+| .+..+++|++|++++|+++.+              |.   .+++|++|++++|++++ +
T Consensus       214 -~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~~l--------------~~---~~~~L~~L~l~~N~l~~-l  272 (454)
T 1jl5_A          214 -PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLKTL--------------PD---LPPSLEALNVRDNYLTD-L  272 (454)
T ss_dssp             -CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCSSC--------------CS---CCTTCCEEECCSSCCSC-C
T ss_pred             -cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCCcc--------------cc---cccccCEEECCCCcccc-c
Confidence             247777777777777 555 366777777777666655432              22   13677888888887775 3


Q ss_pred             hhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCc
Q 036117          406 PQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPP  485 (641)
Q Consensus       406 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~  485 (641)
                      |..   +++|+.|++++|.+++ ++..   .++|++|++++|.+++ ++    ..     +++|++|++++|++++ +|.
T Consensus       273 ~~~---~~~L~~L~ls~N~l~~-l~~~---~~~L~~L~l~~N~l~~-i~----~~-----~~~L~~L~Ls~N~l~~-lp~  334 (454)
T 1jl5_A          273 PEL---PQSLTFLDVSENIFSG-LSEL---PPNLYYLNASSNEIRS-LC----DL-----PPSLEELNVSNNKLIE-LPA  334 (454)
T ss_dssp             CCC---CTTCCEEECCSSCCSE-ESCC---CTTCCEEECCSSCCSE-EC----CC-----CTTCCEEECCSSCCSC-CCC
T ss_pred             Ccc---cCcCCEEECcCCccCc-ccCc---CCcCCEEECcCCcCCc-cc----CC-----cCcCCEEECCCCcccc-ccc
Confidence            332   3678888888888775 2211   2578888888887764 22    11     1268888888888874 554


Q ss_pred             cccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCcc--ccCcccCCCCCCcEEeCCCCcccccCChhhhcCC
Q 036117          486 GICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDG--DITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCT  563 (641)
Q Consensus       486 ~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~--~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~  563 (641)
                      .   +++|+.|++++|++. .+|.   .+++|++|++++|++.+  .+|..++      .  ++.|.+.+.+|..   ++
T Consensus       335 ~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~------~--L~~n~~~~~i~~~---~~  396 (454)
T 1jl5_A          335 L---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVE------D--LRMNSHLAEVPEL---PQ  396 (454)
T ss_dssp             C---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCC------E--EECCC-------------
T ss_pred             c---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHH------h--hhhcccccccccc---cC
Confidence            3   478888888888887 4565   46788889998888887  5555433      2  2346666666653   56


Q ss_pred             CCCEEeCcCCcCcc--cCCccccCCCCCCEEeCCCCcCcccCCccccC
Q 036117          564 NLSNFRISGNRIKG--GIPAELGNLTYLQNLDIFDNQLTGKIPAQLFR  609 (641)
Q Consensus       564 ~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~  609 (641)
                      +|++|++++|++++  .+|.      +++.|++.+|.+.+.+|.....
T Consensus       397 ~L~~L~ls~N~l~~~~~iP~------sl~~L~~~~~~~~~~~~~~~~~  438 (454)
T 1jl5_A          397 NLKQLHVETNPLREFPDIPE------SVEDLRMNSERVVDPYEFAHET  438 (454)
T ss_dssp             ------------------------------------------------
T ss_pred             cCCEEECCCCcCCccccchh------hHhheeCcCcccCCccccCHHH
Confidence            78888999998886  5553      4666778888888776655443

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=8e-39  Score=320.37  Aligned_cols=290  Identities=26%  Similarity=0.443  Sum_probs=196.1

Q ss_pred             cCcHHHHHHHHHHHhcCCCCC-CCCCCCCCCCCCCcc--ccceeeCCC---CCEEEEEcCCCCCcc--ccCCcCCCCCCC
Q 036117           18 ISAQKEAKALLNWKSSLVSSS-LPSWTAINSNSGPCN--WNGIQCNEV---GSISEINLANSGLDG--TLDGFDFSAFPN   89 (641)
Q Consensus        18 ~~~~~~~~~l~~~~~~~~~~~-~~~W~~~~~~~~~c~--~~gv~c~~~---~~v~~l~l~~~~~~~--~~~~~~~~~l~~   89 (641)
                      .|.++|+.||++||+++..+. +.+|...   .+||.  |.||.|+..   ++|++|+++++.+.+  .++ ..+.++++
T Consensus         2 ~c~~~~~~aL~~~k~~~~~~~~l~~W~~~---~~~C~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~-~~l~~l~~   77 (313)
T 1ogq_A            2 LCNPQDKQALLQIKKDLGNPTTLSSWLPT---TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIP-SSLANLPY   77 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCGGGTTCCTT---SCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECC-GGGGGCTT
T ss_pred             CCCHHHHHHHHHHHHhcCCcccccCCCCC---CCCCcCCCcceEeCCCCCCceEEEEECCCCCccCCcccC-hhHhCCCC
Confidence            588999999999999996544 7889754   68998  999999864   789999999998887  677 67888888


Q ss_pred             CCEEECCC-CCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEec
Q 036117           90 LTALNLNM-NNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIG  168 (641)
Q Consensus        90 L~~L~L~~-n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~  168 (641)
                      |++|++++ |.+.+.+|..+.++++|++|++++|.+++.+|..++.+++|++|++++|.+++.+|..+..+++|++|+++
T Consensus        78 L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~  157 (313)
T 1ogq_A           78 LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD  157 (313)
T ss_dssp             CSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECC
T ss_pred             CCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHHhcCCCCCeEECc
Confidence            88888885 77877788888888888888888888877778788888888888888888877777777777777777777


Q ss_pred             cccCCCCCCcccCCCC-CCCEEEcCCCCCC-CCchhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCcccc
Q 036117          169 ANYLEDPDPVKFKGMA-SLTDLWLDYNLLE-KFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEG  246 (641)
Q Consensus       169 ~n~~~~~~~~~l~~l~-~L~~L~l~~~~~~-~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~  246 (641)
                      +|.+++..+..+..++ +|++|++++|.+. .+|..+..++                          |++|++++|.+++
T Consensus       158 ~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~--------------------------L~~L~Ls~N~l~~  211 (313)
T 1ogq_A          158 GNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN--------------------------LAFVDLSRNMLEG  211 (313)
T ss_dssp             SSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC--------------------------CSEEECCSSEEEE
T ss_pred             CCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc--------------------------ccEEECcCCcccC
Confidence            7777655555555554 5555555555442 3444444443                          5555555555554


Q ss_pred             cCCcccCCCCCCCEEEcCCCcCCccCCcccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCccCCCCCCcCCCC
Q 036117          247 EIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGF  326 (641)
Q Consensus       247 ~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~  326 (641)
                      ..+..+..+++|++|++++|.+.+..+. +..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|.. ..
T Consensus       212 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~  289 (313)
T 1ogq_A          212 DASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GN  289 (313)
T ss_dssp             CCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TT
T ss_pred             cCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-cc
Confidence            4455555555555555555555433333 444555555555555555555555555555555555555555554443 45


Q ss_pred             CCCCCEEEccCcc
Q 036117          327 CANLTFLELSINN  339 (641)
Q Consensus       327 ~~~L~~L~l~~n~  339 (641)
                      +++|+.+++++|+
T Consensus       290 l~~L~~l~l~~N~  302 (313)
T 1ogq_A          290 LQRFDVSAYANNK  302 (313)
T ss_dssp             GGGSCGGGTCSSS
T ss_pred             ccccChHHhcCCC
Confidence            5555555555554

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=1.3e-36  Score=319.69  Aligned_cols=415  Identities=19%  Similarity=0.216  Sum_probs=236.8

Q ss_pred             cCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEeccccCCCCCCcccCC
Q 036117          103 SIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKG  182 (641)
Q Consensus       103 ~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~  182 (641)
                      ..+..++++++|++|++++|.+++. | .++.+++|++|++++|.+++. |  +..+++|++|++++|.+++..   +..
T Consensus        33 ~~~~~~~~l~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~~---~~~  104 (457)
T 3bz5_A           33 TDTISEEQLATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNLD---VTP  104 (457)
T ss_dssp             TSEEEHHHHTTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCCC---CTT
T ss_pred             ccccChhHcCCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCceee---cCC
Confidence            4445677888888888888888854 5 678888888888888888764 3  777888888888888877652   667


Q ss_pred             CCCCCEEEcCCCCCCCCchhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCcccccCCcccCCCCCCCEEE
Q 036117          183 MASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLK  262 (641)
Q Consensus       183 l~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~  262 (641)
                      +++|++|++++|.+..++  +..+++|++|++++|.+.+ ++   ++.+++|++|++++|...+.+  .+..+++|++|+
T Consensus       105 l~~L~~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~-l~---l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~  176 (457)
T 3bz5_A          105 LTKLTYLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTE-ID---VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLD  176 (457)
T ss_dssp             CTTCCEEECCSSCCSCCC--CTTCTTCCEEECTTSCCSC-CC---CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEE
T ss_pred             CCcCCEEECCCCcCCeec--CCCCCcCCEEECCCCccce-ec---cccCCcCCEEECCCCCccccc--ccccCCcCCEEE
Confidence            777777777777776665  6677777777777777664 32   356666677777666443333  355566666666


Q ss_pred             cCCCcCCccCCcccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCccCCCCCCcCCCCCCCCCEEEccCccccc
Q 036117          263 LGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTG  342 (641)
Q Consensus       263 L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~  342 (641)
                      +++|.+++ +|  +..+++|+.|++++|.+++.   .+..+++|++|++++|.+.+ +|  +..+++|+.|++++|++++
T Consensus       177 ls~n~l~~-l~--l~~l~~L~~L~l~~N~l~~~---~l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~  247 (457)
T 3bz5_A          177 CSFNKITE-LD--VSQNKLLNRLNCDTNNITKL---DLNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTE  247 (457)
T ss_dssp             CCSSCCCC-CC--CTTCTTCCEEECCSSCCSCC---CCTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSC
T ss_pred             CCCCccce-ec--cccCCCCCEEECcCCcCCee---ccccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCC
Confidence            66666654 22  45555666666666655543   24445555555555555544 22  4444555555555555543


Q ss_pred             cCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEeccc
Q 036117          343 SLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLAN  422 (641)
Q Consensus       343 ~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~  422 (641)
                      ..   +..                                     +++|+.|++++|              +|+.+++++
T Consensus       248 ~~---~~~-------------------------------------l~~L~~L~l~~n--------------~L~~L~l~~  273 (457)
T 3bz5_A          248 LD---VST-------------------------------------LSKLTTLHCIQT--------------DLLEIDLTH  273 (457)
T ss_dssp             CC---CTT-------------------------------------CTTCCEEECTTC--------------CCSCCCCTT
T ss_pred             cC---HHH-------------------------------------CCCCCEEeccCC--------------CCCEEECCC
Confidence            21   223                                     344444444332              233444444


Q ss_pred             CcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccccCCCCCceEeccCCc
Q 036117          423 NFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNK  502 (641)
Q Consensus       423 n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~  502 (641)
                      |.+.+.+|  +..+++|+.|++++|...+.+|...   .      +|+.|++++|             ++|+.|++++|+
T Consensus       274 n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~---~------~L~~L~l~~~-------------~~L~~L~L~~N~  329 (457)
T 3bz5_A          274 NTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQA---A------GITELDLSQN-------------PKLVYLYLNNTE  329 (457)
T ss_dssp             CTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTT---C------CCSCCCCTTC-------------TTCCEEECTTCC
T ss_pred             CccCCccc--ccccccCCEEECCCCcccceeccCC---C------cceEechhhc-------------ccCCEEECCCCc
Confidence            44444433  2344555555555555444443211   1      3444433332             355666666666


Q ss_pred             ccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCcc
Q 036117          503 LVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAE  582 (641)
Q Consensus       503 ~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~  582 (641)
                      +.+. +  +.++++|+.|++++|++.+        ++.|+.|++++|.+.|.     +.+..|+.+++++|+++|.+|..
T Consensus       330 l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~  393 (457)
T 3bz5_A          330 LTEL-D--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD  393 (457)
T ss_dssp             CSCC-C--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred             cccc-c--cccCCcCcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence            6552 2  5666677777777776664        24566666777776655     34556677777777777777755


Q ss_pred             ccC-CCCCCEEeCCCCcCcccCCc-----ccc-CC-CCCCEEeCcCCCCcccCcccccCCCC
Q 036117          583 LGN-LTYLQNLDIFDNQLTGKIPA-----QLF-RS-SFLIRLNLRRNQLSDKIPAEIGKLSR  636 (641)
Q Consensus       583 l~~-l~~L~~L~L~~n~l~~~ip~-----~l~-~~-~~L~~l~l~~n~l~~~~p~~~~~l~~  636 (641)
                      +.. ...+....-..+........     ++. .. .-+.....++|.++|.|++.+.....
T Consensus       394 ~~~~~~~~~~~~~~~~~~y~~~~~~i~~k~~~~~~~~~~y~~~~~~~~fsG~i~~p~~~~~~  455 (457)
T 3bz5_A          394 LLDQFGNPMNIEPGDGGVYDQATNTITWENLSTDNPAVTYTFTSENGAIVGTVTTPFEAPQP  455 (457)
T ss_dssp             CBCTTSCCCEEEESSSEEEETTTTEEEESSCCTTSCEECEEEECTTSSEEEEEEEEBC----
T ss_pred             HhcccCceeeccCCCCccccCCCCeeEEEeccCCCceEEEEEecCCcEEeeEeccccccccc
Confidence            432 23333333333222211100     000 01 12233344578999999988766543

>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}

Probab=100.00  E-value=9.5e-37  Score=320.71  Aligned_cols=356  Identities=17%  Similarity=0.170  Sum_probs=178.9

Q ss_pred             CCCCChhccCCCCCcEEEeccccCCCCCCcccCCCCCCCEEEcCCCCCCCCchhhcCCCCCcEEEeeCCcCCCCCChhhh
Q 036117          149 TGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQL  228 (641)
Q Consensus       149 ~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~l  228 (641)
                      .+..+..++++++|++|++++|.+++.+  .+..+++|++|++++|.+..+|  +..+++|++|++++|.+.+ ++   +
T Consensus        31 ~~~~~~~~~~l~~L~~L~Ls~n~l~~~~--~l~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~-~~---~  102 (457)
T 3bz5_A           31 QATDTISEEQLATLTSLDCHNSSITDMT--GIEKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTN-LD---V  102 (457)
T ss_dssp             CTTSEEEHHHHTTCCEEECCSSCCCCCT--TGGGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSC-CC---C
T ss_pred             CcccccChhHcCCCCEEEccCCCcccCh--hhcccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCce-ee---c
Confidence            3344455666777777777777766552  4666666666666666665554  5566666666666666653 22   3


Q ss_pred             cCCCCCcEEeccCCcccccCCcccCCCCCCCEEEcCCCcCCccCCcccCCCCcccEeeeecccccccCccccCCCCCCCe
Q 036117          229 THLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQR  308 (641)
Q Consensus       229 ~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~  308 (641)
                      +++++|++|++++|.+++ ++  +..+++|++|++++|.+++.   .++.+++|++|++++|...+.+  .+..+++|++
T Consensus       103 ~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~  174 (457)
T 3bz5_A          103 TPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKITKL--DVTPQTQLTT  174 (457)
T ss_dssp             TTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCCCCC--CCTTCTTCCE
T ss_pred             CCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCccccc--ccccCCcCCE
Confidence            556666666666666553 22  55556666666666655542   1445555555555555333332  2344444444


Q ss_pred             eeccCccCCCCCCcCCCCCCCCCEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCC
Q 036117          309 LNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLL  388 (641)
Q Consensus       309 L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~  388 (641)
                      |++++|.+.+. +  +..+++|+.|++++|++++.   .                                     ++.+
T Consensus       175 L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~-------------------------------------l~~l  211 (457)
T 3bz5_A          175 LDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---D-------------------------------------LNQN  211 (457)
T ss_dssp             EECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---C-------------------------------------CTTC
T ss_pred             EECCCCcccee-c--cccCCCCCEEECcCCcCCee---c-------------------------------------cccC
Confidence            44444444332 1  33444444444444444432   1                                     3344


Q ss_pred             CCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCC
Q 036117          389 PKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRF  468 (641)
Q Consensus       389 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~  468 (641)
                      ++|++|++++|++++ +|  +..+++|+.|++++|.+++..   ...+++|+.|++++|                    +
T Consensus       212 ~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n--------------------~  265 (457)
T 3bz5_A          212 IQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT--------------------D  265 (457)
T ss_dssp             TTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC--------------------C
T ss_pred             CCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC--------------------C
Confidence            555555555555554 23  445555555555555555321   233445555554433                    2


Q ss_pred             ccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccc--------cccCCCCcEEECCCCcCccccCcccCCCCC
Q 036117          469 LRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPES--------LWNCTGLTRVRLEQNRLDGDITNALGIYPD  540 (641)
Q Consensus       469 L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~--------l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~  540 (641)
                      |+.|++++|.+.+.+|  +..++.|+.|++++|...+.+|..        +..+++|++|++++|++++.   .++.+++
T Consensus       266 L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~l~~l---~l~~l~~  340 (457)
T 3bz5_A          266 LLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTELTEL---DVSHNTK  340 (457)
T ss_dssp             CSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCCCSCC---CCTTCTT
T ss_pred             CCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCccccc---ccccCCc
Confidence            3344445554444443  234455555555555544444421        12224455555555555542   1444555


Q ss_pred             CcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCccc
Q 036117          541 LQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQL  607 (641)
Q Consensus       541 L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l  607 (641)
                      |+.|++++|++++        ++.|..|++++|.+.|.     .++.+|+.+++++|+++|.||..+
T Consensus       341 L~~L~l~~N~l~~--------l~~L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~~  394 (457)
T 3bz5_A          341 LKSLSCVNAHIQD--------FSSVGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPDL  394 (457)
T ss_dssp             CSEEECCSSCCCB--------CTTGGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTTC
T ss_pred             CcEEECCCCCCCC--------ccccccccccCCcEEec-----ceeeecCccccccCcEEEEcChhH
Confidence            5555555555443        12334444555555443     123344455555555555555443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.2e-35  Score=315.06  Aligned_cols=343  Identities=30%  Similarity=0.461  Sum_probs=178.6

Q ss_pred             CCEEEEEcCCCCCccccCCcCCCCCCCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEE
Q 036117           63 GSISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLL  142 (641)
Q Consensus        63 ~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  142 (641)
                      .+++.++++++.+.. ++  .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+..+  ++.+++|++|+
T Consensus        46 ~~l~~L~l~~~~i~~-l~--~~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~  118 (466)
T 1o6v_A           46 DQVTTLQADRLGIKS-ID--GVEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLT  118 (466)
T ss_dssp             HTCCEEECCSSCCCC-CT--TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEE
T ss_pred             ccccEEecCCCCCcc-Cc--chhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEE
Confidence            456666666666553 22  35666777777777776664432  6667777777777776664433  66677777777


Q ss_pred             cccccCCCCCChhccCCCCCcEEEeccccCCCCCCcccCCCCCCCEEEcCCCCCCCCchhhcCCCCCcEEEeeCCcCCCC
Q 036117          143 LYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGH  222 (641)
Q Consensus       143 l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~  222 (641)
                      +++|.+++..+  +.++++|++|++++|.+.+..  .+..+++|++|+++ +.+..++. +.++++|++|++++|.+.+ 
T Consensus       119 L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~l~-~~~~~~~~-~~~l~~L~~L~l~~n~l~~-  191 (466)
T 1o6v_A          119 LFNNQITDIDP--LKNLTNLNRLELSSNTISDIS--ALSGLTSLQQLSFG-NQVTDLKP-LANLTTLERLDISSNKVSD-  191 (466)
T ss_dssp             CCSSCCCCCGG--GTTCTTCSEEEEEEEEECCCG--GGTTCTTCSEEEEE-ESCCCCGG-GTTCTTCCEEECCSSCCCC-
T ss_pred             CCCCCCCCChH--HcCCCCCCEEECCCCccCCCh--hhccCCcccEeecC-CcccCchh-hccCCCCCEEECcCCcCCC-
Confidence            77766664322  666666777777666665532  35566666666664 33333332 5556666666666665542 


Q ss_pred             CChhhhcCCCCCcEEeccCCcccccCCcccCCCCCCCEEEcCCCcCCccCCcccCCCCcccEeeeecccccccCccccCC
Q 036117          223 IPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGN  302 (641)
Q Consensus       223 ~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~  302 (641)
                      ++  .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+.+.  ..+..+++|++|++++|.+.+..+  +..
T Consensus       192 ~~--~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~  263 (466)
T 1o6v_A          192 IS--VLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI--GTLASLTNLTDLDLANNQISNLAP--LSG  263 (466)
T ss_dssp             CG--GGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GTT
T ss_pred             Ch--hhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc--hhhhcCCCCCEEECCCCccccchh--hhc
Confidence            22  23555566666666665554332  44455555666655555432  234455555555555555554332  444


Q ss_pred             CCCCCeeeccCccCCCCCCcCCCCCCCCCEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCC
Q 036117          303 LRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLP  382 (641)
Q Consensus       303 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~  382 (641)
                      +++|++|++++|.+.+..+  +..+++|++|++++|++.+..+  +..+++|+.|++++|+++.+             .|
T Consensus       264 l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~-------------~~  326 (466)
T 1o6v_A          264 LTKLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDI-------------SP  326 (466)
T ss_dssp             CTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCC-------------GG
T ss_pred             CCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCc-------------hh
Confidence            5555555555555543322  4444555555555555543222  34444444444443333221             11


Q ss_pred             cCCCCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCc
Q 036117          383 PEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLT  450 (641)
Q Consensus       383 ~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~  450 (641)
                        +..+++|++|++++|++++.  ..+..+++|+.|++++|.+.+..|  +..+++|++|++++|.++
T Consensus       327 --~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~  388 (466)
T 1o6v_A          327 --VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWT  388 (466)
T ss_dssp             --GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEE
T ss_pred             --hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCccc
Confidence              23344444444444444432  234444444444444444443333  444444444444444443

>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A

Probab=100.00  E-value=1.6e-35  Score=314.14  Aligned_cols=346  Identities=29%  Similarity=0.375  Sum_probs=270.9

Q ss_pred             CCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCcccccCCcccCCCCCCCEEEcCCCcCCccCCcccCCCCcccE
Q 036117          205 ECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEI  284 (641)
Q Consensus       205 ~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~  284 (641)
                      .+++++.|++.++.+. .++.  +..+++|++|++++|.+++..+  +..+++|++|++++|.+.+..+  +..+++|++
T Consensus        44 ~l~~l~~L~l~~~~i~-~l~~--~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~  116 (466)
T 1o6v_A           44 DLDQVTTLQADRLGIK-SIDG--VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTG  116 (466)
T ss_dssp             HHHTCCEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCE
T ss_pred             HhccccEEecCCCCCc-cCcc--hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCE
Confidence            4568899999999887 4552  5778999999999999885443  8889999999999999885544  888999999


Q ss_pred             eeeecccccccCccccCCCCCCCeeeccCccCCCCCCcCCCCCCCCCEEEccCccccccCchhhhcCCCCCeEeCCcccc
Q 036117          285 LEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQL  364 (641)
Q Consensus       285 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~  364 (641)
                      |++++|.+.+..+  +..+++|++|++++|.+.+.  ..+..+++|++|+++ +.+.+..  .+..+++|+.|++++|.+
T Consensus       117 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~-~~~~~~~--~~~~l~~L~~L~l~~n~l  189 (466)
T 1o6v_A          117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI--SALSGLTSLQQLSFG-NQVTDLK--PLANLTTLERLDISSNKV  189 (466)
T ss_dssp             EECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC--GGGTTCTTCSEEEEE-ESCCCCG--GGTTCTTCCEEECCSSCC
T ss_pred             EECCCCCCCCChH--HcCCCCCCEEECCCCccCCC--hhhccCCcccEeecC-CcccCch--hhccCCCCCEEECcCCcC
Confidence            9999998886643  78889999999999888653  247888899999986 4554332  377888888888888776


Q ss_pred             cccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEc
Q 036117          365 SEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSL  444 (641)
Q Consensus       365 ~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l  444 (641)
                      ..+               +.+..+++|++|++++|.+.+..+  ++.+++|+.|++++|.+.+ + ..+..+++|++|++
T Consensus       190 ~~~---------------~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l  250 (466)
T 1o6v_A          190 SDI---------------SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDL  250 (466)
T ss_dssp             CCC---------------GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEEC
T ss_pred             CCC---------------hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCccc-c-hhhhcCCCCCEEEC
Confidence            543               235667889999999998887655  6678889999999988874 3 35778888999999


Q ss_pred             cCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCC
Q 036117          445 SSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQ  524 (641)
Q Consensus       445 s~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~  524 (641)
                      ++|.+.+..+  +..++      +|++|++++|.+++..+  +..+++|+.|++++|++.+..+  +..+++|+.|++++
T Consensus       251 ~~n~l~~~~~--~~~l~------~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~  318 (466)
T 1o6v_A          251 ANNQISNLAP--LSGLT------KLTELKLGANQISNISP--LAGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYF  318 (466)
T ss_dssp             CSSCCCCCGG--GTTCT------TCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCS
T ss_pred             CCCccccchh--hhcCC------CCCEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcC
Confidence            9888875433  55555      78888888888875333  7778888888888888876443  67888888888888


Q ss_pred             CcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcc
Q 036117          525 NRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTG  601 (641)
Q Consensus       525 n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  601 (641)
                      |++.+..+  ++.+++|+.|++++|++++.  ..+..+++|++|++++|++++..|  +..+++|++|++++|.+++
T Consensus       319 n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~  389 (466)
T 1o6v_A          319 NNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQAWTN  389 (466)
T ss_dssp             SCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCBCGG--GTTCTTCCEEECCCEEEEC
T ss_pred             CcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEeCCCCccCccch--hhcCCCCCEEeccCCcccC
Confidence            88887655  67788888888888888865  467788888888888888887666  7888888888888888875

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.5e-34  Score=306.39  Aligned_cols=320  Identities=22%  Similarity=0.217  Sum_probs=226.4

Q ss_pred             EEeccCCcccccCCcccCCCCCCCEEEcCCCcCCccCCcccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCcc
Q 036117          236 YLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAG  315 (641)
Q Consensus       236 ~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~  315 (641)
                      .++.+++.++ .+|..+.  ++++.|++++|.+.+..+..+..+++|++|++++|.+.+..|..+.++++|++|++++|.
T Consensus        15 ~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~   91 (477)
T 2id5_A           15 AVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR   91 (477)
T ss_dssp             EEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred             EEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence            4555555554 3444332  356666666666665555566666666666666666666666666666667777776666


Q ss_pred             CCCCCCcCCCCCCCCCEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEE
Q 036117          316 LNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLY  395 (641)
Q Consensus       316 ~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~  395 (641)
                      +.+..+..+..+++|++|++++|++.+..+..+..+++|++|++++|.+.             +..+..+..+++|++|+
T Consensus        92 l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~-------------~~~~~~~~~l~~L~~L~  158 (477)
T 2id5_A           92 LKLIPLGVFTGLSNLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLV-------------YISHRAFSGLNSLEQLT  158 (477)
T ss_dssp             CCSCCTTSSTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCC-------------EECTTSSTTCTTCCEEE
T ss_pred             CCccCcccccCCCCCCEEECCCCccccCChhHccccccCCEEECCCCccc-------------eeChhhccCCCCCCEEE
Confidence            66555555666777777777777777666666777777777775555433             33445667778888888


Q ss_pred             ccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEcc
Q 036117          396 LFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFS  475 (641)
Q Consensus       396 L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls  475 (641)
                      +++|++++..+..+..+++|+.|++++|.+.+..+..+..+++|++|++++|...+.+|.......      +|++|+++
T Consensus       159 l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~------~L~~L~l~  232 (477)
T 2id5_A          159 LEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGL------NLTSLSIT  232 (477)
T ss_dssp             EESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTC------CCSEEEEE
T ss_pred             CCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCc------cccEEECc
Confidence            888888877777788888888888888888876667788888888888888877766666554444      68888888


Q ss_pred             CCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccC
Q 036117          476 YNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVL  555 (641)
Q Consensus       476 ~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~  555 (641)
                      +|.+++..+..+..+++|+.|++++|++.+..+..+..+++|++|++++|++.+..+..+..+++|+.|++++|++++..
T Consensus       233 ~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~  312 (477)
T 2id5_A          233 HCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLE  312 (477)
T ss_dssp             SSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCC
T ss_pred             CCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeC
Confidence            88877433346777788888888888877666667777888888888888887777777778888888888888887776


Q ss_pred             ChhhhcCCCCCEEeCcCCcCcc
Q 036117          556 TSNWGKCTNLSNFRISGNRIKG  577 (641)
Q Consensus       556 ~~~~~~l~~L~~L~L~~n~l~~  577 (641)
                      +..+..+++|++|++++|++.+
T Consensus       313 ~~~~~~l~~L~~L~l~~N~l~c  334 (477)
T 2id5_A          313 ESVFHSVGNLETLILDSNPLAC  334 (477)
T ss_dssp             GGGBSCGGGCCEEECCSSCEEC
T ss_pred             HhHcCCCcccCEEEccCCCccC
Confidence            6677777888888888887764

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=100.00  E-value=2.1e-34  Score=307.00  Aligned_cols=324  Identities=19%  Similarity=0.160  Sum_probs=286.1

Q ss_pred             CCEEEcCCCcCCccCCcccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCccCCCCCCcCCCCCCCCCEEEccC
Q 036117          258 LRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSI  337 (641)
Q Consensus       258 L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~  337 (641)
                      -+.++.+++.++ .+|..+.  ++++.|++++|.+.+..+..+..+++|++|++++|.+.+..|..+..+++|++|++++
T Consensus        13 ~~~v~c~~~~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~   89 (477)
T 2id5_A           13 DRAVLCHRKRFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRS   89 (477)
T ss_dssp             TTEEECCSCCCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCC
Confidence            357888888887 5666543  6899999999999998888999999999999999999888889999999999999999


Q ss_pred             ccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCchhhhhCCCCCCe
Q 036117          338 NNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFD  417 (641)
Q Consensus       338 n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  417 (641)
                      |++++..+..+..+++|++|++++|.+.             +..+..+..+++|++|++++|.+.+..+..|..+++|++
T Consensus        90 n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  156 (477)
T 2id5_A           90 NRLKLIPLGVFTGLSNLTKLDISENKIV-------------ILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQ  156 (477)
T ss_dssp             SCCCSCCTTSSTTCTTCCEEECTTSCCC-------------EECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCE
T ss_pred             CcCCccCcccccCCCCCCEEECCCCccc-------------cCChhHccccccCCEEECCCCccceeChhhccCCCCCCE
Confidence            9999766667888999999997766554             345667888999999999999999888889999999999


Q ss_pred             EecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccccCCCCCceEe
Q 036117          418 LQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLT  497 (641)
Q Consensus       418 L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~  497 (641)
                      |++++|.+++..+..+..+++|+.|++++|.+.+..+..+..+.      +|++|++++|...+.+|.......+|+.|+
T Consensus       157 L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~------~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~  230 (477)
T 2id5_A          157 LTLEKCNLTSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLY------RLKVLEISHWPYLDTMTPNCLYGLNLTSLS  230 (477)
T ss_dssp             EEEESCCCSSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCT------TCCEEEEECCTTCCEECTTTTTTCCCSEEE
T ss_pred             EECCCCcCcccChhHhcccCCCcEEeCCCCcCcEeChhhcccCc------ccceeeCCCCccccccCcccccCccccEEE
Confidence            99999999976667799999999999999999877777777776      899999999998888888877788999999


Q ss_pred             ccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcc
Q 036117          498 ANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKG  577 (641)
Q Consensus       498 l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~  577 (641)
                      +++|++.+..+..+..+++|+.|++++|++.+..+..+..+++|+.|++++|++++..|..+..+++|++|++++|++++
T Consensus       231 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~  310 (477)
T 2id5_A          231 ITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTT  310 (477)
T ss_dssp             EESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSC
T ss_pred             CcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCce
Confidence            99999985555678999999999999999998888889999999999999999999999999999999999999999997


Q ss_pred             cCCccccCCCCCCEEeCCCCcCcccC
Q 036117          578 GIPAELGNLTYLQNLDIFDNQLTGKI  603 (641)
Q Consensus       578 ~~p~~l~~l~~L~~L~L~~n~l~~~i  603 (641)
                      ..+..|..+++|++|++++|++.+..
T Consensus       311 ~~~~~~~~l~~L~~L~l~~N~l~c~c  336 (477)
T 2id5_A          311 LEESVFHSVGNLETLILDSNPLACDC  336 (477)
T ss_dssp             CCGGGBSCGGGCCEEECCSSCEECSG
T ss_pred             eCHhHcCCCcccCEEEccCCCccCcc
Confidence            77778899999999999999998543

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=9.3e-33  Score=286.14  Aligned_cols=311  Identities=20%  Similarity=0.202  Sum_probs=247.0

Q ss_pred             CCCCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEE
Q 036117           86 AFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLL  165 (641)
Q Consensus        86 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L  165 (641)
                      .++++++|+++++.+....+..+..+++|++|++++|.+++..+..|+.+++|++|++++|.+++..|..+.++++|++|
T Consensus        43 ~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  122 (390)
T 3o6n_A           43 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  122 (390)
T ss_dssp             GGCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             ccCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEE
Confidence            46788889998888875555557888889999999988887777788888899999999988888778888888999999


Q ss_pred             EeccccCCCCCCcccCCCCCCCEEEcCCCCCCCCc-hhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCcc
Q 036117          166 RIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFP-SFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSF  244 (641)
Q Consensus       166 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~-~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~  244 (641)
                      ++++|.+.......|.++++|++|++++|.+..++ ..+..+++|++|++++|.+.+ ++   +..+++|+.+++++|.+
T Consensus       123 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-~~---~~~l~~L~~L~l~~n~l  198 (390)
T 3o6n_A          123 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD---LSLIPSLFHANVSYNLL  198 (390)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSB-CC---GGGCTTCSEEECCSSCC
T ss_pred             ECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCc-cc---cccccccceeecccccc
Confidence            99998888877777888889999999998886664 457888899999999888873 33   35678888999988877


Q ss_pred             cccCCcccCCCCCCCEEEcCCCcCCccCCcccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCccCCCCCCcCC
Q 036117          245 EGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKEL  324 (641)
Q Consensus       245 ~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l  324 (641)
                      .+     +...++|++|++++|.+... +.  ...++|++|++++|.+.+.  ..+..+++|++|++++|.+.+..+..+
T Consensus       199 ~~-----~~~~~~L~~L~l~~n~l~~~-~~--~~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~~~~~  268 (390)
T 3o6n_A          199 ST-----LAIPIAVEELDASHNSINVV-RG--PVNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF  268 (390)
T ss_dssp             SE-----EECCSSCSEEECCSSCCCEE-EC--CCCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred             cc-----cCCCCcceEEECCCCeeeec-cc--cccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcChhHc
Confidence            63     23446788999998888744 32  2347888999999888864  567888889999999998888778888


Q ss_pred             CCCCCCCEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCC
Q 036117          325 GFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGP  404 (641)
Q Consensus       325 ~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~  404 (641)
                      ..+++|++|++++|++++ +|..+..+++|++|++++|+++.              +|..+..+++|++|++++|++++.
T Consensus       269 ~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~~--------------~~~~~~~l~~L~~L~L~~N~i~~~  333 (390)
T 3o6n_A          269 VKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH--------------VERNQPQFDRLENLYLDHNSIVTL  333 (390)
T ss_dssp             TTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCCC--------------CGGGHHHHTTCSEEECCSSCCCCC
T ss_pred             cccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCccee--------------cCccccccCcCCEEECCCCcccee
Confidence            888899999999998884 45566778888888877776653              344556678899999999988755


Q ss_pred             chhhhhCCCCCCeEecccCcCCcc
Q 036117          405 IPQQIGNLTNLFDLQLANNFFNGS  428 (641)
Q Consensus       405 ~~~~~~~l~~L~~L~l~~n~l~~~  428 (641)
                       +  +..+++|+.|++++|.+.+.
T Consensus       334 -~--~~~~~~L~~L~l~~N~~~~~  354 (390)
T 3o6n_A          334 -K--LSTHHTLKNLTLSHNDWDCN  354 (390)
T ss_dssp             -C--CCTTCCCSEEECCSSCEEHH
T ss_pred             -C--chhhccCCEEEcCCCCccch
Confidence             2  66778899999999988753

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=3.8e-32  Score=277.05  Aligned_cols=308  Identities=24%  Similarity=0.366  Sum_probs=176.4

Q ss_pred             CCCCCCCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCC
Q 036117           83 DFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNA  162 (641)
Q Consensus        83 ~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L  162 (641)
                      .+..+++|++|+++++.+.. ++ .+..+++|++|++++|.+++. +. +..+++|++|++++|.++..  ..+.++++|
T Consensus        39 ~~~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~-~~-~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L  112 (347)
T 4fmz_A           39 TQEELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDI-SP-LSNLVKLTNLYIGTNKITDI--SALQNLTNL  112 (347)
T ss_dssp             CHHHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCTTCCEEECCSSCCCCC--GGGTTCTTC
T ss_pred             cchhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccc-hh-hhcCCcCCEEEccCCcccCc--hHHcCCCcC
Confidence            34567788888888887763 33 377788888888888877743 33 77778888888887777642  346666666


Q ss_pred             cEEEeccccCCCCCCcccCCCCCCCEEEcCCCCCCCCchhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCC
Q 036117          163 WLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKN  242 (641)
Q Consensus       163 ~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n  242 (641)
                      ++|++++|.+.+..+  +..+++|++|++++|.....+..+..+++|++|++++|.+.+. +                  
T Consensus       113 ~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~~~~~l~~L~~L~l~~~~~~~~-~------------------  171 (347)
T 4fmz_A          113 RELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLSPLSNMTGLNYLTVTESKVKDV-T------------------  171 (347)
T ss_dssp             SEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCGGGTTCTTCCEEECCSSCCCCC-G------------------
T ss_pred             CEEECcCCcccCchh--hccCCceeEEECCCCCCcccccchhhCCCCcEEEecCCCcCCc-h------------------
Confidence            666666666654433  5555555555555554322222345555555555555544421 1                  


Q ss_pred             cccccCCcccCCCCCCCEEEcCCCcCCccCCcccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCccCCCCCCc
Q 036117          243 SFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPK  322 (641)
Q Consensus       243 ~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~  322 (641)
                            +  +..+++|++|++++|.+.+. +. +..+++|+.+++++|.+.+..+  +..+++|++|++++|.+.+..+ 
T Consensus       172 ------~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~-  238 (347)
T 4fmz_A          172 ------P--IANLTDLYSLSLNYNQIEDI-SP-LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP-  238 (347)
T ss_dssp             ------G--GGGCTTCSEEECTTSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG-
T ss_pred             ------h--hccCCCCCEEEccCCccccc-cc-ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc-
Confidence                  1  33444444444444444322 11 3444444444444444443322  4444555555555555433322 


Q ss_pred             CCCCCCCCCEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCc
Q 036117          323 ELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFS  402 (641)
Q Consensus       323 ~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~  402 (641)
                       +..+++|++|++++|.+++.  ..+..+++|+.|++++|+++.+               +.+..+++|++|++++|+++
T Consensus       239 -~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~---------------~~~~~l~~L~~L~L~~n~l~  300 (347)
T 4fmz_A          239 -LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI---------------SVLNNLSQLNSLFLNNNQLG  300 (347)
T ss_dssp             -GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC---------------GGGGGCTTCSEEECCSSCCC
T ss_pred             -hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC---------------hhhcCCCCCCEEECcCCcCC
Confidence             45555666666666655532  2355556666666555554432               23445667777777777777


Q ss_pred             CCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCc
Q 036117          403 GPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLT  450 (641)
Q Consensus       403 ~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~  450 (641)
                      +..+..+..+++|++|++++|.+++..|  +..+++|++|++++|+++
T Consensus       301 ~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          301 NEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             GGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             CcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            6677777777777777777777765444  666777777777777654

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=2.6e-32  Score=298.26  Aligned_cols=311  Identities=20%  Similarity=0.199  Sum_probs=230.7

Q ss_pred             CCCCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEE
Q 036117           86 AFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLL  165 (641)
Q Consensus        86 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L  165 (641)
                      .+++++.+++++|.+....+..+..+++|++|++++|.+++..|..|+.+++|++|++++|.+++..|..|+++++|++|
T Consensus        49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  128 (597)
T 3oja_B           49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVL  128 (597)
T ss_dssp             GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred             cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEE
Confidence            35677888888887776555567778888888888888887667778888888888888888887777777888888888


Q ss_pred             EeccccCCCCCCcccCCCCCCCEEEcCCCCCCCCc-hhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCcc
Q 036117          166 RIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFP-SFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSF  244 (641)
Q Consensus       166 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~-~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~  244 (641)
                      ++++|.+...++..|.++++|++|++++|.+..++ ..+..+++|++|++++|.+.+ ++   +..+++|+.|++++|.+
T Consensus       129 ~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-~~---~~~l~~L~~L~l~~n~l  204 (597)
T 3oja_B          129 VLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTH-VD---LSLIPSLFHANVSYNLL  204 (597)
T ss_dssp             ECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSB-CC---GGGCTTCSEEECCSSCC
T ss_pred             EeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCC-cC---hhhhhhhhhhhcccCcc
Confidence            88888888777777788888888888888875554 357778888888888887763 33   35577788888888876


Q ss_pred             cccCCcccCCCCCCCEEEcCCCcCCccCCcccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCccCCCCCCcCC
Q 036117          245 EGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKEL  324 (641)
Q Consensus       245 ~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l  324 (641)
                      .+     +...++|+.|++++|.+....+. +  .++|+.|++++|.+++.  ..+..+++|+.|++++|.+.+..|..+
T Consensus       205 ~~-----l~~~~~L~~L~ls~n~l~~~~~~-~--~~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~  274 (597)
T 3oja_B          205 ST-----LAIPIAVEELDASHNSINVVRGP-V--NVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIMYHPF  274 (597)
T ss_dssp             SE-----EECCTTCSEEECCSSCCCEEECS-C--CSCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEESGGG
T ss_pred             cc-----ccCCchhheeeccCCcccccccc-c--CCCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCCHHHh
Confidence            63     23455788888888877643222 2  35788888888887763  567778888888888888877777778


Q ss_pred             CCCCCCCEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCC
Q 036117          325 GFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGP  404 (641)
Q Consensus       325 ~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~  404 (641)
                      ..+++|+.|++++|.+++ +|..+..+++|+.|++++|.+..              +|..+..+++|+.|++++|.+.+.
T Consensus       275 ~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~--------------i~~~~~~l~~L~~L~L~~N~l~~~  339 (597)
T 3oja_B          275 VKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLH--------------VERNQPQFDRLENLYLDHNSIVTL  339 (597)
T ss_dssp             TTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCC--------------CGGGHHHHTTCSEEECCSSCCCCC
T ss_pred             cCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCc--------------cCcccccCCCCCEEECCCCCCCCc
Confidence            888888888888888875 45566667788888876666542              345556677888888888887754


Q ss_pred             chhhhhCCCCCCeEecccCcCCcc
Q 036117          405 IPQQIGNLTNLFDLQLANNFFNGS  428 (641)
Q Consensus       405 ~~~~~~~l~~L~~L~l~~n~l~~~  428 (641)
                      .   +..+++|+.|++++|.+.+.
T Consensus       340 ~---~~~~~~L~~L~l~~N~~~~~  360 (597)
T 3oja_B          340 K---LSTHHTLKNLTLSHNDWDCN  360 (597)
T ss_dssp             C---CCTTCCCSEEECCSSCEEHH
T ss_pred             C---hhhcCCCCEEEeeCCCCCCh
Confidence            2   55677888888888887653

>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}

Probab=100.00  E-value=4.1e-32  Score=281.28  Aligned_cols=311  Identities=17%  Similarity=0.195  Sum_probs=209.1

Q ss_pred             CCCCCEEEcCCCcCCccCCcccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCccCCCCCCcCCCCCCCCCEEE
Q 036117          255 FPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLE  334 (641)
Q Consensus       255 l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  334 (641)
                      +++++.++++++.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..+++|++|+
T Consensus        44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  123 (390)
T 3o6n_A           44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  123 (390)
T ss_dssp             GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence            46778888888877744444466777888888888887776666777778888888888877777677777778888888


Q ss_pred             ccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCchhhhhCCCC
Q 036117          335 LSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTN  414 (641)
Q Consensus       335 l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~  414 (641)
                      +++|++++..+..+..+++|++|++++|.++             +..+..+..+++|++|++++|++++.   .+..+++
T Consensus       124 L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~-------------~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~  187 (390)
T 3o6n_A          124 LERNDLSSLPRGIFHNTPKLTTLSMSNNNLE-------------RIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPS  187 (390)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-------------BCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTT
T ss_pred             CCCCccCcCCHHHhcCCCCCcEEECCCCccC-------------ccChhhccCCCCCCEEECCCCcCCcc---ccccccc
Confidence            8888777444444567777777775555443             23345566777777777777777654   2455677


Q ss_pred             CCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccccCCCCCc
Q 036117          415 LFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLI  494 (641)
Q Consensus       415 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~  494 (641)
                      |+.+++++|.+.+     +...++|++|++++|.+... |...  .      ++|++|++++|.+++.  ..+..+++|+
T Consensus       188 L~~L~l~~n~l~~-----~~~~~~L~~L~l~~n~l~~~-~~~~--~------~~L~~L~l~~n~l~~~--~~l~~l~~L~  251 (390)
T 3o6n_A          188 LFHANVSYNLLST-----LAIPIAVEELDASHNSINVV-RGPV--N------VELTILKLQHNNLTDT--AWLLNYPGLV  251 (390)
T ss_dssp             CSEEECCSSCCSE-----EECCSSCSEEECCSSCCCEE-ECCC--C------SSCCEEECCSSCCCCC--GGGGGCTTCS
T ss_pred             cceeecccccccc-----cCCCCcceEEECCCCeeeec-cccc--c------ccccEEECCCCCCccc--HHHcCCCCcc
Confidence            7777777777653     23345677777777776533 2211  1      2677777777777642  4566677777


Q ss_pred             eEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCc
Q 036117          495 YLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNR  574 (641)
Q Consensus       495 ~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~  574 (641)
                      .|++++|++.+..|..+..+++|++|++++|++.+ ++..+..+++|++|++++|+++ .+|..+..+++|++|++++|+
T Consensus       252 ~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L~L~~N~  329 (390)
T 3o6n_A          252 EVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS  329 (390)
T ss_dssp             EEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSC
T ss_pred             EEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEEECCCCc
Confidence            77777777776666667777777777777777764 3444456677777777777766 345556667777777777777


Q ss_pred             CcccCCccccCCCCCCEEeCCCCcCccc
Q 036117          575 IKGGIPAELGNLTYLQNLDIFDNQLTGK  602 (641)
Q Consensus       575 l~~~~p~~l~~l~~L~~L~L~~n~l~~~  602 (641)
                      +++. |  +..+++|++|++++|++.+.
T Consensus       330 i~~~-~--~~~~~~L~~L~l~~N~~~~~  354 (390)
T 3o6n_A          330 IVTL-K--LSTHHTLKNLTLSHNDWDCN  354 (390)
T ss_dssp             CCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred             ccee-C--chhhccCCEEEcCCCCccch
Confidence            7633 2  55666777777777777644

>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}

Probab=100.00  E-value=1.4e-31  Score=272.96  Aligned_cols=307  Identities=25%  Similarity=0.333  Sum_probs=182.9

Q ss_pred             cCCCCCCCEEEcCCCcCCccCCcccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCccCCCCCCcCCCCCCCCC
Q 036117          252 IKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLT  331 (641)
Q Consensus       252 l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~  331 (641)
                      +..+++|++|+++++.+.. ++ .+..+++|++|++++|.+.+..+  +..+++|++|++++|.+...  ..+..+++|+
T Consensus        40 ~~~l~~L~~L~l~~~~i~~-~~-~~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~--~~~~~l~~L~  113 (347)
T 4fmz_A           40 QEELESITKLVVAGEKVAS-IQ-GIEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDI--SALQNLTNLR  113 (347)
T ss_dssp             HHHHTTCSEEECCSSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCS
T ss_pred             chhcccccEEEEeCCcccc-ch-hhhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCc--hHHcCCCcCC
Confidence            3456677777777777763 33 36667777777777777665432  66666677777666666442  2355666666


Q ss_pred             EEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCchhhhhC
Q 036117          332 FLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGN  411 (641)
Q Consensus       332 ~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~  411 (641)
                      +|++++|.+.+..+  +..+++|+.|++                                     ++|......+ .+..
T Consensus       114 ~L~l~~n~i~~~~~--~~~l~~L~~L~l-------------------------------------~~n~~~~~~~-~~~~  153 (347)
T 4fmz_A          114 ELYLNEDNISDISP--LANLTKMYSLNL-------------------------------------GANHNLSDLS-PLSN  153 (347)
T ss_dssp             EEECTTSCCCCCGG--GTTCTTCCEEEC-------------------------------------TTCTTCCCCG-GGTT
T ss_pred             EEECcCCcccCchh--hccCCceeEEEC-------------------------------------CCCCCccccc-chhh
Confidence            66666666553222  444555555554                                     4443222222 2444


Q ss_pred             CCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccccCCC
Q 036117          412 LTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGG  491 (641)
Q Consensus       412 l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~  491 (641)
                      +++|++|++++|.+.+..+  +..+++|++|++++|.+.+. +. +..+.      +|+.+++++|.+++..+  +..++
T Consensus       154 l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~-~~-~~~l~------~L~~L~l~~n~l~~~~~--~~~~~  221 (347)
T 4fmz_A          154 MTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIEDI-SP-LASLT------SLHYFTAYVNQITDITP--VANMT  221 (347)
T ss_dssp             CTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCC-GG-GGGCT------TCCEEECCSSCCCCCGG--GGGCT
T ss_pred             CCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCccccc-cc-ccCCC------ccceeecccCCCCCCch--hhcCC
Confidence            4444444444444432211  44444555555555544321 11 33333      45555555555543222  45566


Q ss_pred             CCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCc
Q 036117          492 NLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRIS  571 (641)
Q Consensus       492 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~  571 (641)
                      +|+.|++++|++.+..+  +..+++|++|++++|.+.+.  ..+..+++|++|++++|++++.  ..+..+++|++|+++
T Consensus       222 ~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~  295 (347)
T 4fmz_A          222 RLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLN  295 (347)
T ss_dssp             TCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECC
T ss_pred             cCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECc
Confidence            66666666666654332  66677777777777777653  3567777888888888877754  357777888888888


Q ss_pred             CCcCcccCCccccCCCCCCEEeCCCCcCcccCCccccCCCCCCEEeCcCCCCc
Q 036117          572 GNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLS  624 (641)
Q Consensus       572 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~~~L~~l~l~~n~l~  624 (641)
                      +|++.+..|..++.+++|++|++++|++++..|  +..+++|++|++++|+++
T Consensus       296 ~n~l~~~~~~~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~  346 (347)
T 4fmz_A          296 NNQLGNEDMEVIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK  346 (347)
T ss_dssp             SSCCCGGGHHHHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred             CCcCCCcChhHhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence            888877777777888888888888888875444  667788888888888775

>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8

Probab=100.00  E-value=6.4e-33  Score=277.51  Aligned_cols=248  Identities=32%  Similarity=0.483  Sum_probs=201.9

Q ss_pred             eecccccccc--cCCcCCCCCCCCCEEEccC-CcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccC
Q 036117          370 LQLQMNDLSG--KLPPEIGLLPKLEYLYLFD-NKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSS  446 (641)
Q Consensus       370 l~l~~~~l~~--~~~~~l~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~  446 (641)
                      +++++|.+.+  .+|..++.+++|++|++++ |.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++
T Consensus        55 L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~  134 (313)
T 1ogq_A           55 LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSY  134 (313)
T ss_dssp             EEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCS
T ss_pred             EECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCC
Confidence            3344555555  5566666677777777774 777777777777788888888888888777777788888888888888


Q ss_pred             CcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccccCCC-CCceEeccCCcccCCCccccccCCCCcEEECCCC
Q 036117          447 NQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGG-NLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQN  525 (641)
Q Consensus       447 n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n  525 (641)
                      |.+++.+|..+..++      +|++|++++|++++.+|..+..++ .|+.|++++|++.+.+|..+..++ |++|++++|
T Consensus       135 N~l~~~~p~~~~~l~------~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N  207 (313)
T 1ogq_A          135 NALSGTLPPSISSLP------NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRN  207 (313)
T ss_dssp             SEEESCCCGGGGGCT------TCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSS
T ss_pred             CccCCcCChHHhcCC------CCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCC
Confidence            888777777777777      788888888888878888888887 888888888888888888888877 899999999


Q ss_pred             cCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCc
Q 036117          526 RLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPA  605 (641)
Q Consensus       526 ~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~  605 (641)
                      .+.+..+..++.+++|+.|++++|++++.+|. +..+++|++|++++|++++.+|..+..+++|++|+|++|+++|.+|.
T Consensus       208 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~  286 (313)
T 1ogq_A          208 MLEGDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ  286 (313)
T ss_dssp             EEEECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC
T ss_pred             cccCcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCC
Confidence            88888888888899999999999998877665 77888999999999999888999999999999999999999988887


Q ss_pred             cccCCCCCCEEeCcCCC-Cccc
Q 036117          606 QLFRSSFLIRLNLRRNQ-LSDK  626 (641)
Q Consensus       606 ~l~~~~~L~~l~l~~n~-l~~~  626 (641)
                      . ..+++|+.+++++|+ ++|.
T Consensus       287 ~-~~l~~L~~l~l~~N~~lc~~  307 (313)
T 1ogq_A          287 G-GNLQRFDVSAYANNKCLCGS  307 (313)
T ss_dssp             S-TTGGGSCGGGTCSSSEEEST
T ss_pred             C-ccccccChHHhcCCCCccCC
Confidence            6 778889999999998 6663

>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=100.00  E-value=6.6e-32  Score=295.01  Aligned_cols=312  Identities=17%  Similarity=0.184  Sum_probs=236.4

Q ss_pred             CCCCCEEEcCCCcCCccCCcccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCccCCCCCCcCCCCCCCCCEEE
Q 036117          255 FPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLE  334 (641)
Q Consensus       255 l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~  334 (641)
                      +.+++.++++++.+....+..+..+++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..++.+++|++|+
T Consensus        50 l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~  129 (597)
T 3oja_B           50 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV  129 (597)
T ss_dssp             GCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred             CCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCCCEEE
Confidence            56788888888888755555567788888888888888887777888888888888888888887777788888888888


Q ss_pred             ccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCchhhhhCCCC
Q 036117          335 LSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTN  414 (641)
Q Consensus       335 l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~  414 (641)
                      +++|.+++..+..+..+++|++|++++|.+             .+..|..++.+++|++|++++|.+++..   +..+++
T Consensus       130 L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l-------------~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~  193 (597)
T 3oja_B          130 LERNDLSSLPRGIFHNTPKLTTLSMSNNNL-------------ERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPS  193 (597)
T ss_dssp             CCSSCCCCCCTTTTTTCTTCCEEECCSSCC-------------CBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTT
T ss_pred             eeCCCCCCCCHHHhccCCCCCEEEeeCCcC-------------CCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhh
Confidence            888888855555567888888888555544             4445567778888888888888887653   455678


Q ss_pred             CCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccccCCCCCc
Q 036117          415 LFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLI  494 (641)
Q Consensus       415 L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~  494 (641)
                      |+.|++++|.+.+     +...++|++|++++|.+....+ .+        +++|+.|++++|.+++  +..+..+++|+
T Consensus       194 L~~L~l~~n~l~~-----l~~~~~L~~L~ls~n~l~~~~~-~~--------~~~L~~L~L~~n~l~~--~~~l~~l~~L~  257 (597)
T 3oja_B          194 LFHANVSYNLLST-----LAIPIAVEELDASHNSINVVRG-PV--------NVELTILKLQHNNLTD--TAWLLNYPGLV  257 (597)
T ss_dssp             CSEEECCSSCCSE-----EECCTTCSEEECCSSCCCEEEC-SC--------CSCCCEEECCSSCCCC--CGGGGGCTTCS
T ss_pred             hhhhhcccCcccc-----ccCCchhheeeccCCccccccc-cc--------CCCCCEEECCCCCCCC--ChhhccCCCCC
Confidence            8888888887764     3345678888888888763322 11        1268888888888865  46677788888


Q ss_pred             eEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCc
Q 036117          495 YLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNR  574 (641)
Q Consensus       495 ~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~  574 (641)
                      .|++++|.+.+..|..+..+++|+.|++++|.+.+ +|..++.+++|+.|+|++|.++ .+|..+..+++|++|++++|+
T Consensus       258 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~  335 (597)
T 3oja_B          258 EVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNS  335 (597)
T ss_dssp             EEECCSSCCCEEESGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSC
T ss_pred             EEECCCCccCCCCHHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCC
Confidence            88888888887777788888888888888888875 4555567788888888888877 456667778888888888888


Q ss_pred             CcccCCccccCCCCCCEEeCCCCcCcccC
Q 036117          575 IKGGIPAELGNLTYLQNLDIFDNQLTGKI  603 (641)
Q Consensus       575 l~~~~p~~l~~l~~L~~L~L~~n~l~~~i  603 (641)
                      +++. |  +..+++|+.|++++|++.+..
T Consensus       336 l~~~-~--~~~~~~L~~L~l~~N~~~~~~  361 (597)
T 3oja_B          336 IVTL-K--LSTHHTLKNLTLSHNDWDCNS  361 (597)
T ss_dssp             CCCC-C--CCTTCCCSEEECCSSCEEHHH
T ss_pred             CCCc-C--hhhcCCCCEEEeeCCCCCChh
Confidence            8743 3  566778888888888877653

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.97  E-value=6e-32  Score=272.03  Aligned_cols=277  Identities=19%  Similarity=0.247  Sum_probs=186.0

Q ss_pred             CcHHHHHHHHHHHhcCCCCC---CCCCCC-CCCCCCCccccceeeCC---------CCCEEEEEcCCCCCccccCCcCCC
Q 036117           19 SAQKEAKALLNWKSSLVSSS---LPSWTA-INSNSGPCNWNGIQCNE---------VGSISEINLANSGLDGTLDGFDFS   85 (641)
Q Consensus        19 ~~~~~~~~l~~~~~~~~~~~---~~~W~~-~~~~~~~c~~~gv~c~~---------~~~v~~l~l~~~~~~~~~~~~~~~   85 (641)
                      +..+|+.||++||.++..++   ..+|.. ...+.++|.|.|+.|..         .++++.|+++++.+. .+| ..+.
T Consensus        24 ~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp-~~l~  101 (328)
T 4fcg_A           24 ALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIETRTGRALKATADLLEDATQPGRVALELRSVPLP-QFP-DQAF  101 (328)
T ss_dssp             CCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSCCSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCC-SCGG
T ss_pred             cCchHHHHHHHHHHhccCCchhhhhhhcccccccccccccCCcchhhhHHHHhcccccceeEEEccCCCch-hcC-hhhh
Confidence            44578999999999874332   456731 01126789999999952         256666666666665 444 4455


Q ss_pred             CCCCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEE
Q 036117           86 AFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLL  165 (641)
Q Consensus        86 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L  165 (641)
                      ++++|++|++++|.+. .+|..+..+++|++|++++|.++ .+|..++.+++|++|++++|.+.+.+|..+...      
T Consensus       102 ~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~------  173 (328)
T 4fcg_A          102 RLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLAST------  173 (328)
T ss_dssp             GGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEE------
T ss_pred             hCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhc------
Confidence            5666666666666666 55656666666666666666666 556566666666666666665555555544320      


Q ss_pred             EeccccCCCCCCcccCCCCCCCEEEcCCCCCCCCchhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCccc
Q 036117          166 RIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFE  245 (641)
Q Consensus       166 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~  245 (641)
                               .....+.++++|++|++++|.+..+|..+..+++|++|++++|.+. .++.. +..+++|++|++++|.+.
T Consensus       174 ---------~~~~~~~~l~~L~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~N~l~-~l~~~-l~~l~~L~~L~Ls~n~~~  242 (328)
T 4fcg_A          174 ---------DASGEHQGLVNLQSLRLEWTGIRSLPASIANLQNLKSLKIRNSPLS-ALGPA-IHHLPKLEELDLRGCTAL  242 (328)
T ss_dssp             ---------C-CCCEEESTTCCEEEEEEECCCCCCGGGGGCTTCCEEEEESSCCC-CCCGG-GGGCTTCCEEECTTCTTC
T ss_pred             ---------cchhhhccCCCCCEEECcCCCcCcchHhhcCCCCCCEEEccCCCCC-cCchh-hccCCCCCEEECcCCcch
Confidence                     0011233466667777777766777777777777777777777776 34443 467777788888777777


Q ss_pred             ccCCcccCCCCCCCEEEcCCCcCCccCCcccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCccC
Q 036117          246 GEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGL  316 (641)
Q Consensus       246 ~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~  316 (641)
                      +.+|..+..+++|++|++++|.+.+.+|..+..+++|++|++++|.+.+.+|..+..+++++.+++..+.+
T Consensus       243 ~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~  313 (328)
T 4fcg_A          243 RNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQ  313 (328)
T ss_dssp             CBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGS
T ss_pred             hhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHH
Confidence            77777777788888888888777777777777788888888888887777888888888888887776544

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=4.5e-34  Score=303.34  Aligned_cols=390  Identities=18%  Similarity=0.149  Sum_probs=257.0

Q ss_pred             CCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCcccc----cCCcccCCCCCCCEEEcCCCcCCccCCcccC-CCCc
Q 036117          207 SKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEG----EIPREIKTFPKLRHLKLGQNKLTGTIPDEIG-LLSN  281 (641)
Q Consensus       207 ~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~----~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~-~~~~  281 (641)
                      ++|++|+++++.+........+..+++|++|++++|.+++    .++..+..+++|++|++++|.+.+..+..+. .++.
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            4577778877777643333335667777777777777663    2344556667777777777666542222111 1220


Q ss_pred             ccEeeeecccccccCccccCCCCCCCeeeccCccCCC----CCCcCCCCCCCCCEEEccCccccccCchhhhc-----CC
Q 036117          282 LEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNS----SIPKELGFCANLTFLELSINNLTGSLPLSLAS-----LR  352 (641)
Q Consensus       282 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~-----~~  352 (641)
                                          ..++|++|++++|.+..    .++..+..+++|++|++++|.+++..+..+..     .+
T Consensus        83 --------------------~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~  142 (461)
T 1z7x_W           83 --------------------PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQC  142 (461)
T ss_dssp             --------------------TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTC
T ss_pred             --------------------CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCC
Confidence                                00134444444444432    23444555566666666666665443333222     34


Q ss_pred             CCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCchhhhh-----CCCCCCeEecccCcCCc
Q 036117          353 QISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIG-----NLTNLFDLQLANNFFNG  427 (641)
Q Consensus       353 ~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~-----~l~~L~~L~l~~n~l~~  427 (641)
                      +|++|++++|.++....         ..++..+..+++|++|++++|.+++..+..+.     ..++|++|++++|.+++
T Consensus       143 ~L~~L~L~~n~l~~~~~---------~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~  213 (461)
T 1z7x_W          143 RLEKLQLEYCSLSAASC---------EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTS  213 (461)
T ss_dssp             CCCEEECTTSCCBGGGH---------HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBT
T ss_pred             cceEEECCCCCCCHHHH---------HHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcH
Confidence            56666666655442100         01223445578899999999998766555443     36799999999999886


Q ss_pred             c----CcccccCCCCCCEEEccCCcCcccCCcchh-----cCCCCCCCCCccEEEccCCccccc----CCccccCCCCCc
Q 036117          428 S----IPSTIGNLSSLVKLSLSSNQLTGTLPPEIG-----NSKSDFGPRFLRNVSFSYNNFSGK----LPPGICRGGNLI  494 (641)
Q Consensus       428 ~----~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-----~~~~~~~~~~L~~L~ls~n~l~~~----~~~~~~~~~~L~  494 (641)
                      .    ++..+..+++|++|++++|.+.+.....+.     ...      +|++|++++|.+++.    ++..+..+++|+
T Consensus       214 ~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~------~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~  287 (461)
T 1z7x_W          214 DNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSS------RLRTLWIWECGITAKGCGDLCRVLRAKESLK  287 (461)
T ss_dssp             THHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTC------CCCEEECTTSCCCHHHHHHHHHHHHHCTTCC
T ss_pred             HHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCC------CceEEECcCCCCCHHHHHHHHHHHhhCCCcc
Confidence            3    566777889999999999988754322221     233      799999999988764    566777789999


Q ss_pred             eEeccCCcccCCCcccccc-----CCCCcEEECCCCcCccc----cCcccCCCCCCcEEeCCCCcccccCChhhhc----
Q 036117          495 YLTANVNKLVGPIPESLWN-----CTGLTRVRLEQNRLDGD----ITNALGIYPDLQYIDLGDNQLSGVLTSNWGK----  561 (641)
Q Consensus       495 ~L~l~~n~~~~~~~~~l~~-----~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~----  561 (641)
                      .|++++|.+.+..+..+..     .++|++|++++|.+++.    ++..+..+++|++|++++|++++..+..+..    
T Consensus       288 ~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~  367 (461)
T 1z7x_W          288 ELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQ  367 (461)
T ss_dssp             EEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTS
T ss_pred             eEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcC
Confidence            9999999886544433332     36899999999998765    4556677899999999999988766655543    


Q ss_pred             -CCCCCEEeCcCCcCcc----cCCccccCCCCCCEEeCCCCcCcccCCcc----cc-CCCCCCEEeCcCCCCcccCcccc
Q 036117          562 -CTNLSNFRISGNRIKG----GIPAELGNLTYLQNLDIFDNQLTGKIPAQ----LF-RSSFLIRLNLRRNQLSDKIPAEI  631 (641)
Q Consensus       562 -l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~L~~n~l~~~ip~~----l~-~~~~L~~l~l~~n~l~~~~p~~~  631 (641)
                       .++|++|++++|.+++    .+|..+..+++|++|++++|++++.-...    +. ....|+.|++.++......+..+
T Consensus       368 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~~~~l  447 (461)
T 1z7x_W          368 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRL  447 (461)
T ss_dssp             TTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHH
T ss_pred             CCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHHHHHH
Confidence             6789999999999886    67888888999999999999987652222    21 23468888888888776555443

>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I

Probab=99.97  E-value=3.9e-34  Score=303.84  Aligned_cols=383  Identities=19%  Similarity=0.167  Sum_probs=240.8

Q ss_pred             CCCCEEEcCCCCCCCCc--hhhcCCCCCcEEEeeCCcCCCCC---ChhhhcCCCCCcEEeccCCcccccCCccc-CCCC-
Q 036117          184 ASLTDLWLDYNLLEKFP--SFIAECSKLMFLDLSDNLIMGHI---PIEQLTHLENLEYLNLTKNSFEGEIPREI-KTFP-  256 (641)
Q Consensus       184 ~~L~~L~l~~~~~~~l~--~~l~~~~~L~~L~l~~~~~~~~~---~~~~l~~l~~L~~L~l~~n~~~~~~~~~l-~~l~-  256 (641)
                      ++|++|+++++.+...+  ..+..+++|++|++++|.+.+..   -...+..+++|++|++++|.+.+..+..+ ..++ 
T Consensus         3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~   82 (461)
T 1z7x_W            3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   82 (461)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHhh
Confidence            57899999999985543  34788999999999999987321   12345788999999999999876444333 2344 


Q ss_pred             ---CCCEEEcCCCcCCc----cCCcccCCCCcccEeeeecccccccCccccC-----CCCCCCeeeccCccCCCCC----
Q 036117          257 ---KLRHLKLGQNKLTG----TIPDEIGLLSNLEILEFHENLFHGLIPSSLG-----NLRRLQRLNLKSAGLNSSI----  320 (641)
Q Consensus       257 ---~L~~L~L~~~~l~~----~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~~----  320 (641)
                         +|++|++++|.+..    .++..+..+++|++|++++|.+.+..+..+.     ..++|++|++++|.+.+..    
T Consensus        83 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l  162 (461)
T 1z7x_W           83 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPL  162 (461)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHH
T ss_pred             CCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHH
Confidence               69999999998874    3466677788888888888877654333221     2345555555555554321    


Q ss_pred             CcCCCCCCCCCEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCC-CCCCCCCEEEccCC
Q 036117          321 PKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEI-GLLPKLEYLYLFDN  399 (641)
Q Consensus       321 ~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l-~~~~~L~~L~L~~n  399 (641)
                      +..+..+++|++|++++|.+.+..+..+..                                 .+ ...++|++|++++|
T Consensus       163 ~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~---------------------------------~l~~~~~~L~~L~L~~n  209 (461)
T 1z7x_W          163 ASVLRAKPDFKELTVSNNDINEAGVRVLCQ---------------------------------GLKDSPCQLEALKLESC  209 (461)
T ss_dssp             HHHHHHCTTCCEEECCSSBCHHHHHHHHHH---------------------------------HHHHSCCCCCEEECTTS
T ss_pred             HHHHhhCCCCCEEECcCCCcchHHHHHHHH---------------------------------HHhcCCCCceEEEccCC
Confidence            222333444555555544444322222211                                 00 01335666666666


Q ss_pred             cCcCC----chhhhhCCCCCCeEecccCcCCccC-----cccccCCCCCCEEEccCCcCccc----CCcchhcCCCCCCC
Q 036117          400 KFSGP----IPQQIGNLTNLFDLQLANNFFNGSI-----PSTIGNLSSLVKLSLSSNQLTGT----LPPEIGNSKSDFGP  466 (641)
Q Consensus       400 ~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~-----~~~l~~l~~L~~L~ls~n~l~~~----~~~~~~~~~~~~~~  466 (641)
                      .+++.    ++..+..+++|++|++++|.+.+..     +..+..+++|++|++++|.+++.    ++..+..++     
T Consensus       210 ~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~-----  284 (461)
T 1z7x_W          210 GVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKE-----  284 (461)
T ss_dssp             CCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCT-----
T ss_pred             CCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCC-----
Confidence            66543    3445555666666666666655321     12222456666666666666543    344444444     


Q ss_pred             CCccEEEccCCcccccCCccccC-----CCCCceEeccCCcccCC----CccccccCCCCcEEECCCCcCccccCcccC-
Q 036117          467 RFLRNVSFSYNNFSGKLPPGICR-----GGNLIYLTANVNKLVGP----IPESLWNCTGLTRVRLEQNRLDGDITNALG-  536 (641)
Q Consensus       467 ~~L~~L~ls~n~l~~~~~~~~~~-----~~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~-  536 (641)
                       +|++|++++|.+++..+..+..     .+.|+.|++++|.+.+.    ++..+..+++|++|++++|.+.+..+..+. 
T Consensus       285 -~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~  363 (461)
T 1z7x_W          285 -SLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQ  363 (461)
T ss_dssp             -TCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHH
T ss_pred             -CcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHH
Confidence             5666666666665433322222     25777777777777654    455677788888899988888765443333 


Q ss_pred             ----CCCCCcEEeCCCCcccc----cCChhhhcCCCCCEEeCcCCcCcccCCccc-----cCCCCCCEEeCCCCcCcccC
Q 036117          537 ----IYPDLQYIDLGDNQLSG----VLTSNWGKCTNLSNFRISGNRIKGGIPAEL-----GNLTYLQNLDIFDNQLTGKI  603 (641)
Q Consensus       537 ----~l~~L~~L~Ls~n~~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l-----~~l~~L~~L~L~~n~l~~~i  603 (641)
                          ..++|++|++++|++++    .+|..+..+++|++|++++|++++.....+     .....|+.|++.++......
T Consensus       364 ~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~L~~~~~~~~~~~  443 (461)
T 1z7x_W          364 GLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEM  443 (461)
T ss_dssp             HHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHH
T ss_pred             HHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhheeecccccCHHH
Confidence                26789999999999886    677788888999999999998875422111     12356888888887776544


Q ss_pred             Cc
Q 036117          604 PA  605 (641)
Q Consensus       604 p~  605 (641)
                      ++
T Consensus       444 ~~  445 (461)
T 1z7x_W          444 ED  445 (461)
T ss_dssp             HH
T ss_pred             HH
Confidence            43

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=2.7e-29  Score=253.88  Aligned_cols=269  Identities=17%  Similarity=0.199  Sum_probs=152.3

Q ss_pred             CCCCeeeccCccCCCCCCcCCCCCCCCCEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCc
Q 036117          304 RRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPP  383 (641)
Q Consensus       304 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~  383 (641)
                      +.++.|++++|.+.+..+..+..+++|++|++++|++++..|..+..+++|++|++++|+++.+              |.
T Consensus        52 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~l--------------~~  117 (330)
T 1xku_A           52 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL--------------PE  117 (330)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBC--------------CS
T ss_pred             CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCCCcCCcc--------------Ch
Confidence            3455555555555554444555666666666666666655566666666666666665554422              22


Q ss_pred             CCCCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCc--cCcccccCCCCCCEEEccCCcCcccCCcchhcCC
Q 036117          384 EIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNG--SIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSK  461 (641)
Q Consensus       384 ~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~  461 (641)
                      .+.  ++|++|++++|++++..+..+..+++|+.|++++|.+..  ..+..+..+++|++|++++|.++ .+|..+.   
T Consensus       118 ~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~---  191 (330)
T 1xku_A          118 KMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGLP---  191 (330)
T ss_dssp             SCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSCC---
T ss_pred             hhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccc-cCCcccc---
Confidence            222  578888888888887777777888888888888887753  45566777788888888887776 3443322   


Q ss_pred             CCCCCCCccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCC
Q 036117          462 SDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDL  541 (641)
Q Consensus       462 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L  541 (641)
                           ++|++|++++|++++..+..+..+++|+.|++++|++.+..+..+..+++|++|++++                 
T Consensus       192 -----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~-----------------  249 (330)
T 1xku_A          192 -----PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANTPHLRELHLNN-----------------  249 (330)
T ss_dssp             -----TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTCCEEECCS-----------------
T ss_pred             -----ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccCCCCCCEEECCC-----------------
Confidence                 1566666666666554455555555555555555555444444444444444444444                 


Q ss_pred             cEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccC------CCCCCEEeCCCCcCcc--cCCccccCCCCC
Q 036117          542 QYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGN------LTYLQNLDIFDNQLTG--KIPAQLFRSSFL  613 (641)
Q Consensus       542 ~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~------l~~L~~L~L~~n~l~~--~ip~~l~~~~~L  613 (641)
                             |+++ .+|..+..+++|++|++++|++++..+..|..      .++++.+++++|++..  ..|..+..+.++
T Consensus       250 -------N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l  321 (330)
T 1xku_A          250 -------NKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVR  321 (330)
T ss_dssp             -------SCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCG
T ss_pred             -------CcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCCcccccccccccceEeecCcccccccCccccccccce
Confidence                   4444 33444444445555555555544333333322      2455666666666542  223445555666


Q ss_pred             CEEeCcCCC
Q 036117          614 IRLNLRRNQ  622 (641)
Q Consensus       614 ~~l~l~~n~  622 (641)
                      +.+++++|+
T Consensus       322 ~~l~L~~N~  330 (330)
T 1xku_A          322 AAVQLGNYK  330 (330)
T ss_dssp             GGEEC----
T ss_pred             eEEEecccC
Confidence            666666653

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=1.7e-29  Score=255.52  Aligned_cols=293  Identities=25%  Similarity=0.335  Sum_probs=154.9

Q ss_pred             CCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEec
Q 036117           89 NLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIG  168 (641)
Q Consensus        89 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~  168 (641)
                      ++++++++++.+. .+|..+  .++|++|++++|.+++..|..|+++++|++|++++|.+++..|..|.++++|++|+++
T Consensus        34 ~l~~l~~~~~~l~-~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           34 HLRVVQCSDLGLK-AVPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             ETTEEECCSSCCS-SCCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             cCCEEECCCCCcc-ccCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            4555555555554 334333  2455555555555554444455555555555555555554444445555555555554


Q ss_pred             cccCCCCCCcccCCCCCCCEEEcCCCCCCCCchhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCccc--c
Q 036117          169 ANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFE--G  246 (641)
Q Consensus       169 ~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~--~  246 (641)
                      +|                        .+..+|..+.  ++|++|++++|.+. .++...+..+++|++|++++|.++  +
T Consensus       111 ~n------------------------~l~~l~~~~~--~~L~~L~l~~n~i~-~~~~~~~~~l~~L~~L~l~~n~l~~~~  163 (332)
T 2ft3_A          111 KN------------------------HLVEIPPNLP--SSLVELRIHDNRIR-KVPKGVFSGLRNMNCIEMGGNPLENSG  163 (332)
T ss_dssp             SS------------------------CCCSCCSSCC--TTCCEEECCSSCCC-CCCSGGGSSCSSCCEEECCSCCCBGGG
T ss_pred             CC------------------------cCCccCcccc--ccCCEEECCCCccC-ccCHhHhCCCccCCEEECCCCccccCC
Confidence            44                        4444444332  45555555555555 334444455666666666666654  2


Q ss_pred             cCCcccCCCCCCCEEEcCCCcCCccCCcccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCccCCCCCCcCCCC
Q 036117          247 EIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGF  326 (641)
Q Consensus       247 ~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~  326 (641)
                      ..+..+..+ +|++|++++|.+++ +|..+.  ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..
T Consensus       164 ~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~  239 (332)
T 2ft3_A          164 FEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSLSF  239 (332)
T ss_dssp             SCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGGGG
T ss_pred             CCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHhhC
Confidence            444455555 66666666666663 343332  56666666666666665556666666666666666666555555666


Q ss_pred             CCCCCEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCc--CC
Q 036117          327 CANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFS--GP  404 (641)
Q Consensus       327 ~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~--~~  404 (641)
                      +++|++|++++|+++ .+|..+..+++|+.|++++|+++.+..     ..+.+..+  ....+.|+.|++++|.+.  +.
T Consensus       240 l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~-----~~~~~~~~--~~~~~~l~~L~l~~N~~~~~~~  311 (332)
T 2ft3_A          240 LPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGV-----NDFCPVGF--GVKRAYYNGISLFNNPVPYWEV  311 (332)
T ss_dssp             CTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCT-----TSSSCSSC--CSSSCCBSEEECCSSSSCGGGS
T ss_pred             CCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccCh-----hHcccccc--ccccccccceEeecCccccccc
Confidence            666666666666666 555556666666666655555443210     00000000  001244556666665554  34


Q ss_pred             chhhhhCCCCCCeEecccC
Q 036117          405 IPQQIGNLTNLFDLQLANN  423 (641)
Q Consensus       405 ~~~~~~~l~~L~~L~l~~n  423 (641)
                      .+.+|..+++|+.+++++|
T Consensus       312 ~~~~~~~l~~L~~l~l~~n  330 (332)
T 2ft3_A          312 QPATFRCVTDRLAIQFGNY  330 (332)
T ss_dssp             CGGGGTTBCCSTTEEC---
T ss_pred             Ccccccccchhhhhhcccc
Confidence            4445555555555555554

>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}

Probab=99.97  E-value=1.8e-29  Score=255.36  Aligned_cols=288  Identities=21%  Similarity=0.285  Sum_probs=156.7

Q ss_pred             cccEeeeecccccccCccccCCCCCCCeeeccCccCCCCCCcCCCCCCCCCEEEccCccccccCchhhhcCCCCCeEeCC
Q 036117          281 NLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGIS  360 (641)
Q Consensus       281 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~  360 (641)
                      +++.++++++.+.. +|..+  .++++.|++++|.+.+..+..+..+++|++|++++|++++..|..+..+++|++|+++
T Consensus        34 ~l~~l~~~~~~l~~-ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~  110 (332)
T 2ft3_A           34 HLRVVQCSDLGLKA-VPKEI--SPDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS  110 (332)
T ss_dssp             ETTEEECCSSCCSS-CCSCC--CTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred             cCCEEECCCCCccc-cCCCC--CCCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence            34555555554442 23222  1455556666555555545555666666666666666665556666666666666655


Q ss_pred             cccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCc--cCcccccCCCC
Q 036117          361 NNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNG--SIPSTIGNLSS  438 (641)
Q Consensus       361 ~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~--~~~~~l~~l~~  438 (641)
                      +|+++.+              |..+.  ++|++|++++|++++..+..+..+++|+.|++++|.+..  ..+..+..+ +
T Consensus       111 ~n~l~~l--------------~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~  173 (332)
T 2ft3_A          111 KNHLVEI--------------PPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-K  173 (332)
T ss_dssp             SSCCCSC--------------CSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-C
T ss_pred             CCcCCcc--------------Ccccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-c
Confidence            5554322              22222  566677777776665555556666666777766666642  344445555 6


Q ss_pred             CCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCc
Q 036117          439 LVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLT  518 (641)
Q Consensus       439 L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~  518 (641)
                      |++|++++|.+++ +|..+.                                ++|+.|++++|++.+..+..+..+++|+
T Consensus       174 L~~L~l~~n~l~~-l~~~~~--------------------------------~~L~~L~l~~n~i~~~~~~~l~~l~~L~  220 (332)
T 2ft3_A          174 LNYLRISEAKLTG-IPKDLP--------------------------------ETLNELHLDHNKIQAIELEDLLRYSKLY  220 (332)
T ss_dssp             CSCCBCCSSBCSS-CCSSSC--------------------------------SSCSCCBCCSSCCCCCCTTSSTTCTTCS
T ss_pred             cCEEECcCCCCCc-cCcccc--------------------------------CCCCEEECCCCcCCccCHHHhcCCCCCC
Confidence            6666666666552 333221                                3444444444444444444455555555


Q ss_pred             EEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccC------CCCCCEE
Q 036117          519 RVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGN------LTYLQNL  592 (641)
Q Consensus       519 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~------l~~L~~L  592 (641)
                      .|++++|++.+..+..++.+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..|..      .++|+.|
T Consensus       221 ~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~l~~L  299 (332)
T 2ft3_A          221 RLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFCPVGFGVKRAYYNGI  299 (332)
T ss_dssp             CCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSSCSSCCSSSCCBSEE
T ss_pred             EEECCCCcCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHccccccccccccccce
Confidence            5555555555544445555556666666666555 44555555666666666666665444444433      2456667


Q ss_pred             eCCCCcCc--ccCCccccCCCCCCEEeCcCCC
Q 036117          593 DIFDNQLT--GKIPAQLFRSSFLIRLNLRRNQ  622 (641)
Q Consensus       593 ~L~~n~l~--~~ip~~l~~~~~L~~l~l~~n~  622 (641)
                      ++++|++.  +..|..+..++.|+.+++++|+
T Consensus       300 ~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~  331 (332)
T 2ft3_A          300 SLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK  331 (332)
T ss_dssp             ECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred             EeecCcccccccCcccccccchhhhhhccccc
Confidence            77777665  3344556666667777766653

>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*

Probab=99.97  E-value=5.2e-29  Score=251.77  Aligned_cols=243  Identities=23%  Similarity=0.316  Sum_probs=129.4

Q ss_pred             CCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEec
Q 036117           89 NLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIG  168 (641)
Q Consensus        89 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~  168 (641)
                      ++++++++++.+. .+|..+.  +.+++|++++|.+++..+..|+++++|++|++++|.+++..|..|.++++|++|+++
T Consensus        32 ~l~~l~~~~~~l~-~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls  108 (330)
T 1xku_A           32 HLRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS  108 (330)
T ss_dssp             ETTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCeEEEecCCCcc-ccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence            5666777666665 3444332  456666666666665555556666666666666666665555566666666666665


Q ss_pred             cccCCCCCCcccCCCCCCCEEEcCCCCCCCCchhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCcccc--
Q 036117          169 ANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEG--  246 (641)
Q Consensus       169 ~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~--  246 (641)
                      +|.++.                        +|..+.  ++|++|++++|.+. .++...+.++++|++|++++|.+..  
T Consensus       109 ~n~l~~------------------------l~~~~~--~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~l~~n~l~~~~  161 (330)
T 1xku_A          109 KNQLKE------------------------LPEKMP--KTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSG  161 (330)
T ss_dssp             SSCCSB------------------------CCSSCC--TTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGG
T ss_pred             CCcCCc------------------------cChhhc--ccccEEECCCCccc-ccCHhHhcCCccccEEECCCCcCCccC
Confidence            555543                        333222  34555555555544 3333344555555555555555432  


Q ss_pred             cCCcccCCCCCCCEEEcCCCcCCccCCcccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCccCCCCCCcCCCC
Q 036117          247 EIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGF  326 (641)
Q Consensus       247 ~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~  326 (641)
                      ..+..+..+++|++|++++|.+. .+|..+.  ++|++|++++|.+.+..+..+..+++|++|++++|.+.+..+..+..
T Consensus       162 ~~~~~~~~l~~L~~L~l~~n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~  238 (330)
T 1xku_A          162 IENGAFQGMKKLSYIRIADTNIT-TIPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLAN  238 (330)
T ss_dssp             BCTTGGGGCTTCCEEECCSSCCC-SCCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGG
T ss_pred             cChhhccCCCCcCEEECCCCccc-cCCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhhccC
Confidence            34445555556666666665555 2333222  45555555555555544455555555555555555554444444455


Q ss_pred             CCCCCEEEccCccccccCchhhhcCCCCCeEeCCccccc
Q 036117          327 CANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLS  365 (641)
Q Consensus       327 ~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~  365 (641)
                      +++|++|++++|+++ .+|..+..+++|++|++++|+++
T Consensus       239 l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~  276 (330)
T 1xku_A          239 TPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNIS  276 (330)
T ss_dssp             STTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCC
T ss_pred             CCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCC
Confidence            555555555555555 44444444555555554444443

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=5.2e-31  Score=289.04  Aligned_cols=354  Identities=15%  Similarity=0.085  Sum_probs=183.6

Q ss_pred             hhcCCCCCcEEEeeCCcCCCCCC---hhhhcCCCCCcEEeccCCccc----ccCCcccCCCCCCCEEEcCCCcCCccCCc
Q 036117          202 FIAECSKLMFLDLSDNLIMGHIP---IEQLTHLENLEYLNLTKNSFE----GEIPREIKTFPKLRHLKLGQNKLTGTIPD  274 (641)
Q Consensus       202 ~l~~~~~L~~L~l~~~~~~~~~~---~~~l~~l~~L~~L~l~~n~~~----~~~~~~l~~l~~L~~L~L~~~~l~~~~~~  274 (641)
                      ....+++|++|++++|.+.+.-.   ......+++|++|++++|.++    +.++..+..+++|++|++++|.+.+ ++.
T Consensus       159 ~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~  237 (592)
T 3ogk_B          159 IVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVG  237 (592)
T ss_dssp             HHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHH
T ss_pred             HHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHH
Confidence            34466777777777776653321   123345666777777666664    2233334456666666666666553 444


Q ss_pred             ccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCccCCCCCCcCCCCCCCCCEEEccCccccccCchhhhcCCCC
Q 036117          275 EIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQI  354 (641)
Q Consensus       275 ~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L  354 (641)
                      .+..+++|++|+++.+.....                     ....+..+..+++|+.++++++.. +.+|..+..+++|
T Consensus       238 ~~~~~~~L~~L~l~~~~~~~~---------------------~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L  295 (592)
T 3ogk_B          238 FFKAAANLEEFCGGSLNEDIG---------------------MPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQI  295 (592)
T ss_dssp             HHHHCTTCCEEEECBCCCCTT---------------------CTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGC
T ss_pred             HHhhhhHHHhhcccccccccc---------------------hHHHHHHhhccccccccCccccch-hHHHHHHhhcCCC
Confidence            455566666666654221100                     011122333444555555544321 2344444445555


Q ss_pred             CeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcC-CchhhhhCCCCCCeEeccc-----------
Q 036117          355 SELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSG-PIPQQIGNLTNLFDLQLAN-----------  422 (641)
Q Consensus       355 ~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~-~~~~~~~~l~~L~~L~l~~-----------  422 (641)
                      ++|++++|.++..            .++..+..+++|++|+++ +.+.+ .++.....+++|++|++++           
T Consensus       296 ~~L~Ls~~~l~~~------------~~~~~~~~~~~L~~L~L~-~~~~~~~l~~~~~~~~~L~~L~L~~g~~~~~~~~~~  362 (592)
T 3ogk_B          296 RKLDLLYALLETE------------DHCTLIQKCPNLEVLETR-NVIGDRGLEVLAQYCKQLKRLRIERGADEQGMEDEE  362 (592)
T ss_dssp             CEEEETTCCCCHH------------HHHHHHTTCTTCCEEEEE-GGGHHHHHHHHHHHCTTCCEEEEECCCCSSTTSSTT
T ss_pred             cEEecCCCcCCHH------------HHHHHHHhCcCCCEEecc-CccCHHHHHHHHHhCCCCCEEEeecCcccccccccc
Confidence            5555444432211            000112345556666555 22221 2222334556666666662           


Q ss_pred             CcCCcc-CcccccCCCCCCEEEccCCcCcccCCcchhc-CCCCCCCCCccEEEcc----CCccccc-----CCccccCCC
Q 036117          423 NFFNGS-IPSTIGNLSSLVKLSLSSNQLTGTLPPEIGN-SKSDFGPRFLRNVSFS----YNNFSGK-----LPPGICRGG  491 (641)
Q Consensus       423 n~l~~~-~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~-~~~~~~~~~L~~L~ls----~n~l~~~-----~~~~~~~~~  491 (641)
                      +.+++. ++.....+++|++|+++.+.+++..+..+.. ++      +|++|+++    .+.+++.     ++..+..++
T Consensus       363 ~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~------~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~  436 (592)
T 3ogk_B          363 GLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLK------NLCDFRLVLLDREERITDLPLDNGVRSLLIGCK  436 (592)
T ss_dssp             CCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCC------SCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCT
T ss_pred             CccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCC------CCcEEEEeecCCCccccCchHHHHHHHHHHhCC
Confidence            333322 1222334566666666555555544444433 33      56666664    3444432     222345567


Q ss_pred             CCceEeccCCc--ccCCCccccc-cCCCCcEEECCCCcCccc-cCcccCCCCCCcEEeCCCCccccc-CChhhhcCCCCC
Q 036117          492 NLIYLTANVNK--LVGPIPESLW-NCTGLTRVRLEQNRLDGD-ITNALGIYPDLQYIDLGDNQLSGV-LTSNWGKCTNLS  566 (641)
Q Consensus       492 ~L~~L~l~~n~--~~~~~~~~l~-~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~~~~~-~~~~~~~l~~L~  566 (641)
                      +|+.|+++.|.  +.+..+..+. .+++|++|++++|++++. .+..+..+++|++|++++|++++. ++..+..+++|+
T Consensus       437 ~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~  516 (592)
T 3ogk_B          437 KLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLR  516 (592)
T ss_dssp             TCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCC
T ss_pred             CCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccC
Confidence            77777776543  4433333333 367788888888877653 344456778888888888887654 333445678888


Q ss_pred             EEeCcCCcCcccCCccc-cCCCCCCEEeCCCC
Q 036117          567 NFRISGNRIKGGIPAEL-GNLTYLQNLDIFDN  597 (641)
Q Consensus       567 ~L~L~~n~l~~~~p~~l-~~l~~L~~L~L~~n  597 (641)
                      +|++++|++++.....+ ..++.++...+..+
T Consensus       517 ~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~  548 (592)
T 3ogk_B          517 YLWVQGYRASMTGQDLMQMARPYWNIELIPSR  548 (592)
T ss_dssp             EEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred             eeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence            88888888765433333 34566665555444

>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*

Probab=99.96  E-value=3.6e-31  Score=290.28  Aligned_cols=379  Identities=15%  Similarity=0.062  Sum_probs=193.3

Q ss_pred             CCCCCcEEeccCCcccccCCcccCC-CC-CCCEEEcCCCcC-Cc-cCCcccCCCCcccEeeeeccccccc----CccccC
Q 036117          230 HLENLEYLNLTKNSFEGEIPREIKT-FP-KLRHLKLGQNKL-TG-TIPDEIGLLSNLEILEFHENLFHGL----IPSSLG  301 (641)
Q Consensus       230 ~l~~L~~L~l~~n~~~~~~~~~l~~-l~-~L~~L~L~~~~l-~~-~~~~~l~~~~~L~~L~l~~n~~~~~----~~~~l~  301 (641)
                      .+++|++|++++|.+++..+..+.. ++ +|++|++++|.. .. .++.....+++|++|++++|.+.+.    ++....
T Consensus       110 ~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~  189 (592)
T 3ogk_B          110 NLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ  189 (592)
T ss_dssp             HCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred             hCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence            4455555555555444333333332 22 255555555431 10 0111112445555555555554433    112233


Q ss_pred             CCCCCCeeeccCccCCC----CCCcCCCCCCCCCEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccc
Q 036117          302 NLRRLQRLNLKSAGLNS----SIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDL  377 (641)
Q Consensus       302 ~l~~L~~L~l~~~~~~~----~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l  377 (641)
                      .+++|++|++++|.+.+    .++..+..+++|++|++++|.+.+ ++..+..+++|++|+++.....          .-
T Consensus       190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~----------~~  258 (592)
T 3ogk_B          190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFKAAANLEEFCGGSLNED----------IG  258 (592)
T ss_dssp             HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHHHCTTCCEEEECBCCCC----------TT
T ss_pred             cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHhhhhHHHhhcccccccc----------cc
Confidence            45556666666555542    222233455666666666666653 4555666666666665432110          00


Q ss_pred             cccCCcCCCCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCc-ccccCCCCCCEEEccCCcCcccCCcc
Q 036117          378 SGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIP-STIGNLSSLVKLSLSSNQLTGTLPPE  456 (641)
Q Consensus       378 ~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~ls~n~l~~~~~~~  456 (641)
                      .+..+..+..+++|+.++++++.. +.+|..+..+++|++|++++|.+.+... ..+..+++|++|+++++-..+.++..
T Consensus       259 ~~~~~~~l~~~~~L~~L~l~~~~~-~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~  337 (592)
T 3ogk_B          259 MPEKYMNLVFPRKLCRLGLSYMGP-NEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVL  337 (592)
T ss_dssp             CTTSSSCCCCCTTCCEEEETTCCT-TTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHH
T ss_pred             hHHHHHHhhccccccccCccccch-hHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHH
Confidence            012233445566666666666432 2455555566666666666666543322 33456666666666632211122222


Q ss_pred             hhcCCCCCCCCCccEEEcc-----------CCccccc-CCccccCCCCCceEeccCCcccCCCcccccc-CCCCcEEECC
Q 036117          457 IGNSKSDFGPRFLRNVSFS-----------YNNFSGK-LPPGICRGGNLIYLTANVNKLVGPIPESLWN-CTGLTRVRLE  523 (641)
Q Consensus       457 ~~~~~~~~~~~~L~~L~ls-----------~n~l~~~-~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~-~~~L~~L~l~  523 (641)
                      ...++      +|++|+++           .+.+++. ++.....+++|+.|++..+++.+..+..+.. +++|+.|+++
T Consensus       338 ~~~~~------~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~  411 (592)
T 3ogk_B          338 AQYCK------QLKRLRIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLV  411 (592)
T ss_dssp             HHHCT------TCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEE
T ss_pred             HHhCC------CCCEEEeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEe
Confidence            23334      56666666           2344332 1222334666677766666665555444444 6667777664


Q ss_pred             ----CCcCccc-----cCcccCCCCCCcEEeCCCCc--ccccCChhhhc-CCCCCEEeCcCCcCcc-cCCccccCCCCCC
Q 036117          524 ----QNRLDGD-----ITNALGIYPDLQYIDLGDNQ--LSGVLTSNWGK-CTNLSNFRISGNRIKG-GIPAELGNLTYLQ  590 (641)
Q Consensus       524 ----~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~--~~~~~~~~~~~-l~~L~~L~L~~n~l~~-~~p~~l~~l~~L~  590 (641)
                          .|.+++.     ++..+..+++|++|++++|.  +++..+..+.. +++|++|++++|++++ .++..+..+++|+
T Consensus       412 ~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~  491 (592)
T 3ogk_B          412 LLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQ  491 (592)
T ss_dssp             ECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCC
T ss_pred             ecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccC
Confidence                4455432     22234456677777776543  45444444433 6667777777776654 2334446666777


Q ss_pred             EEeCCCCcCccc-CCccccCCCCCCEEeCcCCCCccc
Q 036117          591 NLDIFDNQLTGK-IPAQLFRSSFLIRLNLRRNQLSDK  626 (641)
Q Consensus       591 ~L~L~~n~l~~~-ip~~l~~~~~L~~l~l~~n~l~~~  626 (641)
                      +|+|++|.+++. ++.....+++|+.|++++|++++.
T Consensus       492 ~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~  528 (592)
T 3ogk_B          492 KLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMT  528 (592)
T ss_dssp             EEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTT
T ss_pred             eeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHH
Confidence            777777776544 333334566677777777776654

>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}

Probab=99.96  E-value=4.5e-28  Score=243.69  Aligned_cols=218  Identities=18%  Similarity=0.227  Sum_probs=133.9

Q ss_pred             CcCCCCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCC
Q 036117          382 PPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSK  461 (641)
Q Consensus       382 ~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~  461 (641)
                      |..+..+++|++|++++|.++ .+|..++.+++|++|++++|.+. .+|..+..+++|++|++++|++.+.+|..+....
T Consensus        97 p~~l~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~  174 (328)
T 4fcg_A           97 PDQAFRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTD  174 (328)
T ss_dssp             CSCGGGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC
T ss_pred             ChhhhhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhcc
Confidence            444444555555555555555 44555555555555555555555 4455555555555555555555444444332200


Q ss_pred             CCCCCCCccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCC
Q 036117          462 SDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDL  541 (641)
Q Consensus       462 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L  541 (641)
                                           .+..+..+++|+.|++++|++. .+|..+.++++|++|++++|++.+ +|..++.+++|
T Consensus       175 ---------------------~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L  231 (328)
T 4fcg_A          175 ---------------------ASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKL  231 (328)
T ss_dssp             ----------------------CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTC
T ss_pred             ---------------------chhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCC
Confidence                                 0111233666677777766666 666666667777777777777664 44456667777


Q ss_pred             cEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCccccCCCCCCEEeCcCC
Q 036117          542 QYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRN  621 (641)
Q Consensus       542 ~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~~~L~~l~l~~n  621 (641)
                      ++|++++|++.+.+|..++.+++|++|++++|++.+.+|..++++++|++|+|++|++.+.+|..+..+++|+.+++..+
T Consensus       232 ~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~  311 (328)
T 4fcg_A          232 EELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPH  311 (328)
T ss_dssp             CEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGG
T ss_pred             CEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHH
Confidence            77777777777777777777777777777777777777777777777777777777777777777777777777777665


Q ss_pred             CCc
Q 036117          622 QLS  624 (641)
Q Consensus       622 ~l~  624 (641)
                      .+.
T Consensus       312 ~~~  314 (328)
T 4fcg_A          312 LQA  314 (328)
T ss_dssp             GSC
T ss_pred             HHH
Confidence            543

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=1.8e-27  Score=237.77  Aligned_cols=244  Identities=18%  Similarity=0.111  Sum_probs=188.4

Q ss_pred             CCCCCCCCEEEccCCcCcCC--chhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCC-cchhcCC
Q 036117          385 IGLLPKLEYLYLFDNKFSGP--IPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLP-PEIGNSK  461 (641)
Q Consensus       385 l~~~~~L~~L~L~~n~l~~~--~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~-~~~~~~~  461 (641)
                      +..+++|++|++++|+++..  .+..+..+++|++|++++|.+. .++..+..+++|++|++++|.+.+..+ ..+..+.
T Consensus        48 ~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~  126 (306)
T 2z66_A           48 FDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLR  126 (306)
T ss_dssp             TTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCT
T ss_pred             hhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhcc
Confidence            45666777777777766632  2455667778888888888776 456667778888888888887764433 3455555


Q ss_pred             CCCCCCCccEEEccCCcccccCCccccCCCCCceEeccCCcccC-CCccccccCCCCcEEECCCCcCccccCcccCCCCC
Q 036117          462 SDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVG-PIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPD  540 (641)
Q Consensus       462 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~  540 (641)
                            +|++|++++|.+.+..+..+..+++|+.|++++|.+.+ ..|..+..+++|++|++++|.+.+..+..++.+++
T Consensus       127 ------~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~  200 (306)
T 2z66_A          127 ------NLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLSS  200 (306)
T ss_dssp             ------TCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCTT
T ss_pred             ------CCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHHhcCCCC
Confidence                  78888888888877777778888888888888888876 57778888999999999999998888888889999


Q ss_pred             CcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCC-CCCEEeCCCCcCcccCCc-ccc-CCCCCCEEe
Q 036117          541 LQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLT-YLQNLDIFDNQLTGKIPA-QLF-RSSFLIRLN  617 (641)
Q Consensus       541 L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~-~L~~L~L~~n~l~~~ip~-~l~-~~~~L~~l~  617 (641)
                      |++|++++|++++..+..+..+++|++|++++|++.+..|..+..++ +|++|++++|++.+..+. ++. -+...+.+.
T Consensus       201 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~~~~l~~~~~~~  280 (306)
T 2z66_A          201 LQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSFLQWIKDQRQLL  280 (306)
T ss_dssp             CCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHHHHHHHHTGGGB
T ss_pred             CCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHHHHHHHhhhhhh
Confidence            99999999999888777888899999999999999988888888884 899999999999865321 111 224455567


Q ss_pred             CcCCCCcccCcccccCCC
Q 036117          618 LRRNQLSDKIPAEIGKLS  635 (641)
Q Consensus       618 l~~n~l~~~~p~~~~~l~  635 (641)
                      +..+.+....|..+.+.+
T Consensus       281 ~~~~~~~C~~p~~~~g~~  298 (306)
T 2z66_A          281 VEVERMECATPSDKQGMP  298 (306)
T ss_dssp             SCGGGCBEEESGGGTTCB
T ss_pred             ccccccccCCchhhCCce
Confidence            777888888888877754

>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}

Probab=99.95  E-value=4.2e-27  Score=235.09  Aligned_cols=232  Identities=21%  Similarity=0.166  Sum_probs=208.9

Q ss_pred             CCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCcc--CcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCC
Q 036117          389 PKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGS--IPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGP  466 (641)
Q Consensus       389 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~  466 (641)
                      +++++|++++|++++..+..|..+++|++|++++|.+...  .+..+..+++|++|++++|.+. .+|..+..++     
T Consensus        28 ~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~~~l~-----  101 (306)
T 2z66_A           28 SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNFLGLE-----  101 (306)
T ss_dssp             TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEEETCT-----
T ss_pred             CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccc-cChhhcCCCC-----
Confidence            6899999999999966666689999999999999999833  3566778999999999999987 5666677777     


Q ss_pred             CCccEEEccCCcccccCC-ccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCcc-ccCcccCCCCCCcEE
Q 036117          467 RFLRNVSFSYNNFSGKLP-PGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDG-DITNALGIYPDLQYI  544 (641)
Q Consensus       467 ~~L~~L~ls~n~l~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~-~~~~~~~~l~~L~~L  544 (641)
                       +|++|++++|.+++..+ ..+..+++|+.|++++|.+.+..+..+..+++|++|++++|.+.+ ..|..+..+++|++|
T Consensus       102 -~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L  180 (306)
T 2z66_A          102 -QLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFL  180 (306)
T ss_dssp             -TCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEE
T ss_pred             -CCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEE
Confidence             89999999999986554 578899999999999999998888899999999999999999987 678889999999999


Q ss_pred             eCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCccccCC-CCCCEEeCcCCCC
Q 036117          545 DLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRS-SFLIRLNLRRNQL  623 (641)
Q Consensus       545 ~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~-~~L~~l~l~~n~l  623 (641)
                      ++++|++++..|..+..+++|++|++++|++++..+..+..+++|++|++++|++++..|..+..+ ++|+.|++++|++
T Consensus       181 ~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~  260 (306)
T 2z66_A          181 DLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF  260 (306)
T ss_dssp             ECTTSCCCEECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred             ECCCCCcCCcCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence            999999999989999999999999999999998877789999999999999999999899888888 4999999999999


Q ss_pred             cccC
Q 036117          624 SDKI  627 (641)
Q Consensus       624 ~~~~  627 (641)
                      ++..
T Consensus       261 ~~~c  264 (306)
T 2z66_A          261 ACTC  264 (306)
T ss_dssp             ECSG
T ss_pred             eccc
Confidence            8653

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=1e-27  Score=244.56  Aligned_cols=279  Identities=19%  Similarity=0.176  Sum_probs=209.0

Q ss_pred             CCCCCeeeccCccCCCCCCcCCCCCCCCCEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCC
Q 036117          303 LRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLP  382 (641)
Q Consensus       303 l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~  382 (641)
                      ++.....+.+++.+.. +|..+.  ++|++|++++|++++..+..+..+++|++|++++|.++.             ..+
T Consensus        30 C~~~~~c~~~~~~l~~-iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~-------------~~~   93 (353)
T 2z80_A           30 CDRNGICKGSSGSLNS-IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINT-------------IEE   93 (353)
T ss_dssp             ECTTSEEECCSTTCSS-CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCE-------------ECT
T ss_pred             CCCCeEeeCCCCCccc-cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCc-------------cCH
Confidence            3444557777777754 444433  589999999999987666688888999998866665543             345


Q ss_pred             cCCCCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCc-ccccCCCCCCEEEccCCc-CcccCCcchhcC
Q 036117          383 PEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIP-STIGNLSSLVKLSLSSNQ-LTGTLPPEIGNS  460 (641)
Q Consensus       383 ~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-~~l~~l~~L~~L~ls~n~-l~~~~~~~~~~~  460 (641)
                      ..+..+++|++|++++|++++..+..+..+++|++|++++|.+.+..+ ..+..+++|++|++++|. +.+..+..+..+
T Consensus        94 ~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l  173 (353)
T 2z80_A           94 DSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL  173 (353)
T ss_dssp             TTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTC
T ss_pred             hhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCC
Confidence            668888999999999999987777678889999999999998884333 368889999999999984 655556667666


Q ss_pred             CCCCCCCCccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCccc---CC
Q 036117          461 KSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNAL---GI  537 (641)
Q Consensus       461 ~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~---~~  537 (641)
                      .      +|++|++++|.+++..|..+..+++|+.|++++|++....+..+..+++|++|++++|.+.+..+..+   ..
T Consensus       174 ~------~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~  247 (353)
T 2z80_A          174 T------FLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGET  247 (353)
T ss_dssp             C------EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESCBCTTCCCC------C
T ss_pred             C------CCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEECCCCccccccccccccccc
Confidence            6      89999999999888888888888889999998888753333334567888888888888876554433   24


Q ss_pred             CCCCcEEeCCCCcccc----cCChhhhcCCCCCEEeCcCCcCcccCCcc-ccCCCCCCEEeCCCCcCcccCC
Q 036117          538 YPDLQYIDLGDNQLSG----VLTSNWGKCTNLSNFRISGNRIKGGIPAE-LGNLTYLQNLDIFDNQLTGKIP  604 (641)
Q Consensus       538 l~~L~~L~Ls~n~~~~----~~~~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n~l~~~ip  604 (641)
                      .+.++.++++++.+++    .+|..+..+++|++|++++|+++ .+|.. ++++++|++|++++|++.+..|
T Consensus       248 ~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~-~i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          248 NSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             CCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             cchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCC-ccCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            5667778888877765    35666777888888888888887 45544 5778888888888888876554

>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}

Probab=99.95  E-value=1.9e-27  Score=242.57  Aligned_cols=286  Identities=20%  Similarity=0.249  Sum_probs=170.8

Q ss_pred             CCCccccceeeCCCCCEEEEEcCCCCCccccCCcCCCCCCCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCC
Q 036117           49 SGPCNWNGIQCNEVGSISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPI  128 (641)
Q Consensus        49 ~~~c~~~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~  128 (641)
                      ..+|.|.|+ |+         .++++++ .+| ..+  .++|++|++++|.+++..+..+..+++|++|++++|.+++..
T Consensus        27 ~~~C~~~~~-c~---------~~~~~l~-~iP-~~~--~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~   92 (353)
T 2z80_A           27 SLSCDRNGI-CK---------GSSGSLN-SIP-SGL--TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIE   92 (353)
T ss_dssp             CCEECTTSE-EE---------CCSTTCS-SCC-TTC--CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEEC
T ss_pred             CCCCCCCeE-ee---------CCCCCcc-ccc-ccc--cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccC
Confidence            457889887 53         3444444 334 222  247788888888777655556777777777777777777666


Q ss_pred             ccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEeccccCCCCCC-cccCCCCCCCEEEcCCCCCCCCchhhcCCC
Q 036117          129 PPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDP-VKFKGMASLTDLWLDYNLLEKFPSFIAECS  207 (641)
Q Consensus       129 p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~~~~~~l~~~l~~~~  207 (641)
                      |..|+++++|++|++++|.+++..+..+.++++|++|++++|.+..... .                       .+..++
T Consensus        93 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~-----------------------~~~~l~  149 (353)
T 2z80_A           93 EDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETS-----------------------LFSHLT  149 (353)
T ss_dssp             TTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSC-----------------------SCTTCT
T ss_pred             HhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCcccCchh-----------------------hhccCC
Confidence            6667777777777777777765444445666666666666555554333 2                       344455


Q ss_pred             CCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCcccccCCcccCCCCCCCEEEcCCCcCCccCCcccCCCCcccEeee
Q 036117          208 KLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEF  287 (641)
Q Consensus       208 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l  287 (641)
                      +|++|++++|...+.++...+..+++|++|++++|.+++..|..+..+++|++|++++|.+.......+..+++|++|++
T Consensus       150 ~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L  229 (353)
T 2z80_A          150 KLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLEIFVDVTSSVECLEL  229 (353)
T ss_dssp             TCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHHHHHHHTTTEEEEEE
T ss_pred             CCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchhhhhhhcccccEEEC
Confidence            55555555553222333334455666666666666666555566666666666666666654222222334566666666


Q ss_pred             ecccccccCccccCCCCCCCeeeccCccCCCCCCcCCCCCCCCCEEEccCccccc----cCchhhhcCCCCCeEeCCccc
Q 036117          288 HENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTG----SLPLSLASLRQISELGISNNQ  363 (641)
Q Consensus       288 ~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~----~~~~~l~~~~~L~~L~l~~n~  363 (641)
                      ++|.+.+..+..+..                     ....+.++.++++++.+.+    .+|..+..+++|++|++++|+
T Consensus       230 ~~n~l~~~~~~~l~~---------------------~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~  288 (353)
T 2z80_A          230 RDTDLDTFHFSELST---------------------GETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ  288 (353)
T ss_dssp             ESCBCTTCCCC---------------------------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC
T ss_pred             CCCcccccccccccc---------------------ccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCC
Confidence            666655433221110                     1223456666666666654    356677778888888877666


Q ss_pred             ccccceeecccccccccCCcC-CCCCCCCCEEEccCCcCcCCch
Q 036117          364 LSEIISLQLQMNDLSGKLPPE-IGLLPKLEYLYLFDNKFSGPIP  406 (641)
Q Consensus       364 ~~~l~~l~l~~~~l~~~~~~~-l~~~~~L~~L~L~~n~l~~~~~  406 (641)
                      ++.              +|.. +..+++|++|++++|.+.+..|
T Consensus       289 l~~--------------i~~~~~~~l~~L~~L~L~~N~~~~~~~  318 (353)
T 2z80_A          289 LKS--------------VPDGIFDRLTSLQKIWLHTNPWDCSCP  318 (353)
T ss_dssp             CCC--------------CCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCc--------------cCHHHHhcCCCCCEEEeeCCCccCcCC
Confidence            543              3333 4678888888888888887654

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=1.7e-26  Score=228.04  Aligned_cols=238  Identities=19%  Similarity=0.170  Sum_probs=171.4

Q ss_pred             CCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCc-CcccCCcchhcCCCCCCCC
Q 036117          389 PKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQ-LTGTLPPEIGNSKSDFGPR  467 (641)
Q Consensus       389 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~-l~~~~~~~~~~~~~~~~~~  467 (641)
                      +++++|++++|.+++..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|. +....|..+..+.      
T Consensus        32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~------  105 (285)
T 1ozn_A           32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG------  105 (285)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCT------
T ss_pred             CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCc------
Confidence            566777777777766555666677777777777777766556667777777777777775 5544455555555      


Q ss_pred             CccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCC
Q 036117          468 FLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLG  547 (641)
Q Consensus       468 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls  547 (641)
                      +|++|++++|.+++..+..+..+++|+.|++++|++.+..+..+..+++|++|++++|++.+..+..+..+++|+.|+++
T Consensus       106 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~  185 (285)
T 1ozn_A          106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH  185 (285)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             CCCEEECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECC
Confidence            67777777777776666667777778888888877776666667778888888888888876666667788888888888


Q ss_pred             CCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCccccCCCCCCEEeCcCCCCcccC
Q 036117          548 DNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKI  627 (641)
Q Consensus       548 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~~~L~~l~l~~n~l~~~~  627 (641)
                      +|++++..|..+..+++|++|++++|++++..+..+..+++|++|++++|++....+.. .....++.+..+.+.+....
T Consensus       186 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~  264 (285)
T 1ozn_A          186 QNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSL  264 (285)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEE
T ss_pred             CCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCC
Confidence            88888777888888888888888888888666666788888888888888887544321 12234555667777887778


Q ss_pred             cccccC
Q 036117          628 PAEIGK  633 (641)
Q Consensus       628 p~~~~~  633 (641)
                      |..+..
T Consensus       265 p~~l~g  270 (285)
T 1ozn_A          265 PQRLAG  270 (285)
T ss_dssp             SGGGTT
T ss_pred             chHhCC
Confidence            776655

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=6e-26  Score=239.50  Aligned_cols=228  Identities=25%  Similarity=0.230  Sum_probs=111.9

Q ss_pred             CCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEe
Q 036117           88 PNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRI  167 (641)
Q Consensus        88 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l  167 (641)
                      +++++|+|++|.+.+..+..|..+++|++|++++|.+++..|..|.++++|++|++++|.+++..+..|.++++|++|++
T Consensus        75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L  154 (452)
T 3zyi_A           75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL  154 (452)
T ss_dssp             TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred             CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence            35555555555555555555555555555555555555544455555555555555555555444444555555555555


Q ss_pred             ccccCCCCCCcccCCCCCCCEEEcCCCCCCCCchhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCccccc
Q 036117          168 GANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGE  247 (641)
Q Consensus       168 ~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~  247 (641)
                      ++|.+..+....|.++++                       |++|++++|...+.++...+..+++|++|++++|.+++ 
T Consensus       155 ~~N~l~~~~~~~~~~l~~-----------------------L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~-  210 (452)
T 3zyi_A          155 RNNPIESIPSYAFNRVPS-----------------------LMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD-  210 (452)
T ss_dssp             CSCCCCEECTTTTTTCTT-----------------------CCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-
T ss_pred             CCCCcceeCHhHHhcCCc-----------------------ccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-
Confidence            555544444444444444                       44444444333223333334445555555555555442 


Q ss_pred             CCcccCCCCCCCEEEcCCCcCCccCCcccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCccCCCCCCcCCCCC
Q 036117          248 IPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFC  327 (641)
Q Consensus       248 ~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~  327 (641)
                      +| .+..+++|++|++++|.+.+..|..+..+++|++|++++|.+.+..+..+..+++|+.|++++|.+.+..+..+..+
T Consensus       211 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l  289 (452)
T 3zyi_A          211 MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL  289 (452)
T ss_dssp             CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTC
T ss_pred             cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccc
Confidence            22 24444455555555555544444444444445555554444444444444444444444444444444333344444


Q ss_pred             CCCCEEEccCccc
Q 036117          328 ANLTFLELSINNL  340 (641)
Q Consensus       328 ~~L~~L~l~~n~l  340 (641)
                      ++|+.|++++|.+
T Consensus       290 ~~L~~L~L~~Np~  302 (452)
T 3zyi_A          290 RYLVELHLHHNPW  302 (452)
T ss_dssp             TTCCEEECCSSCE
T ss_pred             cCCCEEEccCCCc
Confidence            4444455444443

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.94  E-value=8.8e-30  Score=279.40  Aligned_cols=421  Identities=13%  Similarity=0.090  Sum_probs=225.1

Q ss_pred             ccCCCCCCCEEEcCCCCC-C---CC------------chhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCC
Q 036117          179 KFKGMASLTDLWLDYNLL-E---KF------------PSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKN  242 (641)
Q Consensus       179 ~l~~l~~L~~L~l~~~~~-~---~l------------~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n  242 (641)
                      .+..+++|++|+++++.. .   -.            +.....+++|++|++++|.+.+.........+++|++|++++|
T Consensus        61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~  140 (594)
T 2p1m_B           61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC  140 (594)
T ss_dssp             HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred             HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence            345567778887777642 1   11            1223456677777777776654333333235677777777776


Q ss_pred             -ccccc-CCcccCCCCCCCEEEcCCCcCCccCCccc----CCCCcccEeeeeccc--cccc-CccccCCCCCCCeeeccC
Q 036117          243 -SFEGE-IPREIKTFPKLRHLKLGQNKLTGTIPDEI----GLLSNLEILEFHENL--FHGL-IPSSLGNLRRLQRLNLKS  313 (641)
Q Consensus       243 -~~~~~-~~~~l~~l~~L~~L~L~~~~l~~~~~~~l----~~~~~L~~L~l~~n~--~~~~-~~~~l~~l~~L~~L~l~~  313 (641)
                       .++.. ++..+..+++|++|++++|.+++..+..+    ..+++|++|++++|.  +... +......+++|++|++++
T Consensus       141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~  220 (594)
T 2p1m_B          141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNR  220 (594)
T ss_dssp             EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCT
T ss_pred             CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCC
Confidence             33322 33333466777777777776654333322    245567777776665  1111 111123356666666666


Q ss_pred             ccCCCCCCcCCCCCCCCCEEEccCcc-------ccccCchhhhcCCCCCeE-eCCcccccccceeecccccccccCCcCC
Q 036117          314 AGLNSSIPKELGFCANLTFLELSINN-------LTGSLPLSLASLRQISEL-GISNNQLSEIISLQLQMNDLSGKLPPEI  385 (641)
Q Consensus       314 ~~~~~~~~~~l~~~~~L~~L~l~~n~-------l~~~~~~~l~~~~~L~~L-~l~~n~~~~l~~l~l~~~~l~~~~~~~l  385 (641)
                      |...+.++..+..+++|++|++..+.       +. .++..+..+++|+.+ .+.+..              .+.++..+
T Consensus       221 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~-~l~~~l~~~~~L~~Ls~~~~~~--------------~~~l~~~~  285 (594)
T 2p1m_B          221 AVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYS-GLSVALSGCKELRCLSGFWDAV--------------PAYLPAVY  285 (594)
T ss_dssp             TSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHH-HHHHHHHTCTTCCEEECCBTCC--------------GGGGGGGH
T ss_pred             CCcHHHHHHHHhcCCcceEcccccccCccchhhHH-HHHHHHhcCCCcccccCCcccc--------------hhhHHHHH
Confidence            62222244445556666666644332       22 233355566666665 222111              11222233


Q ss_pred             CCCCCCCEEEccCCcCcCCch-hhhhCCCCCCeEecccCcCCc-cCcccccCCCCCCEEEccC---------CcCcccCC
Q 036117          386 GLLPKLEYLYLFDNKFSGPIP-QQIGNLTNLFDLQLANNFFNG-SIPSTIGNLSSLVKLSLSS---------NQLTGTLP  454 (641)
Q Consensus       386 ~~~~~L~~L~L~~n~l~~~~~-~~~~~l~~L~~L~l~~n~l~~-~~~~~l~~l~~L~~L~ls~---------n~l~~~~~  454 (641)
                      ..+++|++|++++|.+++... ..+..+++|++|++++| +.+ .++.....+++|++|++++         +.+++...
T Consensus       286 ~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l  364 (594)
T 2p1m_B          286 SVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGL  364 (594)
T ss_dssp             HHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHH
T ss_pred             HhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHH
Confidence            346777788887777654322 22456777777777777 332 2223333467777777743         23332221


Q ss_pred             cchh-cCCCCCCCCCccEEEccCCcccccCCcccc-CCCCCceEecc--C----CcccC-----CCccccccCCCCcEEE
Q 036117          455 PEIG-NSKSDFGPRFLRNVSFSYNNFSGKLPPGIC-RGGNLIYLTAN--V----NKLVG-----PIPESLWNCTGLTRVR  521 (641)
Q Consensus       455 ~~~~-~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~-~~~~L~~L~l~--~----n~~~~-----~~~~~l~~~~~L~~L~  521 (641)
                      ..+. .++      +|++|.+.++.+++..+..+. .+++|+.|+++  +    +.+++     .++..+..+++|+.|+
T Consensus       365 ~~l~~~~~------~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~  438 (594)
T 2p1m_B          365 VSVSMGCP------KLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLS  438 (594)
T ss_dssp             HHHHHHCT------TCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEE
T ss_pred             HHHHHhch------hHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEe
Confidence            2222 233      677777777766654444443 46777777776  2    23331     1112245567777777


Q ss_pred             CCCCcCccccCcccCC-CCCCcEEeCCCCcccccCChhh-hcCCCCCEEeCcCCcCcccCCc-cccCCCCCCEEeCCCCc
Q 036117          522 LEQNRLDGDITNALGI-YPDLQYIDLGDNQLSGVLTSNW-GKCTNLSNFRISGNRIKGGIPA-ELGNLTYLQNLDIFDNQ  598 (641)
Q Consensus       522 l~~n~l~~~~~~~~~~-l~~L~~L~Ls~n~~~~~~~~~~-~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~L~L~~n~  598 (641)
                      +++ .+++..+..++. +++|+.|++++|.+++..+..+ ..+++|++|++++|++++..+. ....+++|++|++++|+
T Consensus       439 L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~  517 (594)
T 2p1m_B          439 LSG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCS  517 (594)
T ss_dssp             CCS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSC
T ss_pred             ecC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCC
Confidence            765 454444444433 6677777777777665544444 5567777777777776443322 33446677777777777


Q ss_pred             CcccCCccc-cCCCCCCEEeCcCCC
Q 036117          599 LTGKIPAQL-FRSSFLIRLNLRRNQ  622 (641)
Q Consensus       599 l~~~ip~~l-~~~~~L~~l~l~~n~  622 (641)
                      ++......+ ..++.++...+..+.
T Consensus       518 ~~~~~~~~l~~~lp~l~i~~~~~~~  542 (594)
T 2p1m_B          518 VSFGACKLLGQKMPKLNVEVIDERG  542 (594)
T ss_dssp             CBHHHHHHHHHHCTTEEEEEECSSS
T ss_pred             CCHHHHHHHHHhCCCCEEEEecCCC
Confidence            653333333 234555555555443

>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*

Probab=99.94  E-value=2.2e-26  Score=227.30  Aligned_cols=231  Identities=20%  Similarity=0.163  Sum_probs=143.9

Q ss_pred             CCCCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCc-CCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCC
Q 036117          384 EIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNF-FNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKS  462 (641)
Q Consensus       384 ~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~  462 (641)
                      .+..+++|++|++++|.+++..+..+..+++|++|++++|. +....+..+..+++|++|++++|.+++..|..+..+. 
T Consensus        51 ~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~-  129 (285)
T 1ozn_A           51 SFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLA-  129 (285)
T ss_dssp             TTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT-
T ss_pred             HcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCc-
Confidence            34444555555555555554445555555555555555554 4433344555555555555555555544444444444 


Q ss_pred             CCCCCCccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCc
Q 036117          463 DFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQ  542 (641)
Q Consensus       463 ~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~  542 (641)
                           +|++|++++|.+++..+..+..+++|+.|++++|++.+..+..+..+++|++|++++|.+.+..+..++.+++|+
T Consensus       130 -----~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~  204 (285)
T 1ozn_A          130 -----ALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLM  204 (285)
T ss_dssp             -----TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             -----CCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCccccc
Confidence                 566666666665544444466666777777777777655555677778888888888888877777788888888


Q ss_pred             EEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCccccC--CCCCCEEeCcC
Q 036117          543 YIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFR--SSFLIRLNLRR  620 (641)
Q Consensus       543 ~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~--~~~L~~l~l~~  620 (641)
                      .|++++|++++..+..+..+++|++|++++|++.+..+.. .-...++.+..+.+.+.+..|..+..  +..++..++.+
T Consensus       205 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~-~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~  283 (285)
T 1ozn_A          205 TLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR-PLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQG  283 (285)
T ss_dssp             EEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-HHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCC
T ss_pred             EeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-HHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhcc
Confidence            8888888888766667788888888888888876443211 11123455567777787778876654  34555555555


Q ss_pred             C
Q 036117          621 N  621 (641)
Q Consensus       621 n  621 (641)
                      |
T Consensus       284 C  284 (285)
T 1ozn_A          284 C  284 (285)
T ss_dssp             C
T ss_pred             C
Confidence            4

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=1.2e-25  Score=236.36  Aligned_cols=244  Identities=23%  Similarity=0.230  Sum_probs=139.0

Q ss_pred             EEEcCCCCCccccCCcCCCCCCCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccc
Q 036117           67 EINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNN  146 (641)
Q Consensus        67 ~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n  146 (641)
                      .++.++.++. .+| ..+  .+++++|+|++|.+.+..+..|..+++|++|++++|.+++..+..|.++++|++|++++|
T Consensus        47 ~v~c~~~~l~-~iP-~~~--~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n  122 (440)
T 3zyj_A           47 KVICVRKNLR-EVP-DGI--STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDN  122 (440)
T ss_dssp             EEECCSCCCS-SCC-SCC--CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSS
T ss_pred             EEEeCCCCcC-cCC-CCC--CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCC
Confidence            4444444444 344 222  257888888888888777777888888888888888887766677778888888888888


Q ss_pred             cCCCCCChhccCCCCCcEEEeccccCCCCCCcccCCCCCCCEEEcCCCC-CCCCchhhcCCCCCcEEEeeCCcCCCCCCh
Q 036117          147 SLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNL-LEKFPSFIAECSKLMFLDLSDNLIMGHIPI  225 (641)
Q Consensus       147 ~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~-~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~  225 (641)
                      .+++..+..|..+++|++|++++|.+.......|..+++|++|++++|. +..+                        +.
T Consensus       123 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i------------------------~~  178 (440)
T 3zyj_A          123 RLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYI------------------------SE  178 (440)
T ss_dssp             CCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEE------------------------CT
T ss_pred             cCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCccee------------------------Cc
Confidence            7776655667777777777777777766665566666666666665532 2333                        32


Q ss_pred             hhhcCCCCCcEEeccCCcccccCCcccCCCCCCCEEEcCCCcCCccCCcccCCCCcccEeeeecccccccCccccCCCCC
Q 036117          226 EQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRR  305 (641)
Q Consensus       226 ~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~  305 (641)
                      ..|.++++|++|++++|.++ .+| .+..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+++
T Consensus       179 ~~~~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~  256 (440)
T 3zyj_A          179 GAFEGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQS  256 (440)
T ss_dssp             TTTTTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTT
T ss_pred             chhhcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCC
Confidence            33344444444444444443 222 2344444444444444444444444444444444444444444444444444444


Q ss_pred             CCeeeccCccCCCCCCcCCCCCCCCCEEEccCccc
Q 036117          306 LQRLNLKSAGLNSSIPKELGFCANLTFLELSINNL  340 (641)
Q Consensus       306 L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l  340 (641)
                      |++|++++|.+.+..+..+..+++|+.|++++|.+
T Consensus       257 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~  291 (440)
T 3zyj_A          257 LVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPW  291 (440)
T ss_dssp             CCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCE
T ss_pred             CCEEECCCCCCCccChhHhccccCCCEEEcCCCCc
Confidence            44444444444443333344444444444444443

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.94  E-value=1.7e-27  Score=238.86  Aligned_cols=267  Identities=17%  Similarity=0.189  Sum_probs=158.3

Q ss_pred             CCEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCchhhh
Q 036117          330 LTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQI  409 (641)
Q Consensus       330 L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~  409 (641)
                      ++..+++.+.+.......+..+++|++|++++|.++             +..|..+..+++|++|++++|++++..+  +
T Consensus        12 l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~-------------~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~   76 (317)
T 3o53_A           12 YKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLS-------------QISAADLAPFTKLELLNLSSNVLYETLD--L   76 (317)
T ss_dssp             EEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCC-------------CCCHHHHTTCTTCCEEECTTSCCEEEEE--E
T ss_pred             eeEeeccccchhhhHHHHhccCCCCCEEECcCCccC-------------cCCHHHhhCCCcCCEEECCCCcCCcchh--h
Confidence            344444444444333344444556666664444433             2333455666677777777776665443  6


Q ss_pred             hCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccccC
Q 036117          410 GNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICR  489 (641)
Q Consensus       410 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~  489 (641)
                      ..+++|++|++++|.+++. +    ..++|++|++++|.+++..+..   +.      +|++|++++|++++..+..+..
T Consensus        77 ~~l~~L~~L~Ls~n~l~~l-~----~~~~L~~L~l~~n~l~~~~~~~---~~------~L~~L~l~~N~l~~~~~~~~~~  142 (317)
T 3o53_A           77 ESLSTLRTLDLNNNYVQEL-L----VGPSIETLHAANNNISRVSCSR---GQ------GKKNIYLANNKITMLRDLDEGC  142 (317)
T ss_dssp             TTCTTCCEEECCSSEEEEE-E----ECTTCCEEECCSSCCSEEEECC---CS------SCEEEECCSSCCCSGGGBCTGG
T ss_pred             hhcCCCCEEECcCCccccc-c----CCCCcCEEECCCCccCCcCccc---cC------CCCEEECCCCCCCCccchhhhc
Confidence            6667777777777766532 2    2366777777777666443221   22      5677777777766555556666


Q ss_pred             CCCCceEeccCCcccCCCcccc-ccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEE
Q 036117          490 GGNLIYLTANVNKLVGPIPESL-WNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNF  568 (641)
Q Consensus       490 ~~~L~~L~l~~n~~~~~~~~~l-~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L  568 (641)
                      ++.|+.|++++|++.+..+..+ ..+++|++|++++|.+.+..  ....+++|++|++++|++++..+ .+..+++|++|
T Consensus       143 l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~--~~~~l~~L~~L~Ls~N~l~~l~~-~~~~l~~L~~L  219 (317)
T 3o53_A          143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVK--GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWI  219 (317)
T ss_dssp             GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEE--CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEE
T ss_pred             cCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCcccc--cccccccCCEEECCCCcCCcchh-hhcccCcccEE
Confidence            6677777777776665555544 35666777777777666442  22346667777777777664433 36666677777


Q ss_pred             eCcCCcCcccCCccccCCCCCCEEeCCCCcCc-ccCCccccCCCCCCEEeCcCC-CCcccCcc
Q 036117          569 RISGNRIKGGIPAELGNLTYLQNLDIFDNQLT-GKIPAQLFRSSFLIRLNLRRN-QLSDKIPA  629 (641)
Q Consensus       569 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~ip~~l~~~~~L~~l~l~~n-~l~~~~p~  629 (641)
                      ++++|+++ .+|..+..+++|+.|++++|++. +.+|..+..++.|+.+++++| .+.|..|.
T Consensus       220 ~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~  281 (317)
T 3o53_A          220 SLRNNKLV-LIEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEE  281 (317)
T ss_dssp             ECTTSCCC-EECTTCCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSC
T ss_pred             ECcCCccc-chhhHhhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCchhccCCchh
Confidence            77777666 45566666677777777777766 556666666666666666633 34444443

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.94  E-value=1.6e-25  Score=236.15  Aligned_cols=248  Identities=17%  Similarity=0.155  Sum_probs=163.0

Q ss_pred             CCEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCchhhh
Q 036117          330 LTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQI  409 (641)
Q Consensus       330 L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~  409 (641)
                      ...++.++..++ .+|..+.  +.++.|++++|.+             .+..+..+..+++|++|++++|++++..+..|
T Consensus        56 ~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i-------------~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~  119 (452)
T 3zyi_A           56 FSKVVCTRRGLS-EVPQGIP--SNTRYLNLMENNI-------------QMIQADTFRHLHHLEVLQLGRNSIRQIEVGAF  119 (452)
T ss_dssp             SCEEECCSSCCS-SCCSCCC--TTCSEEECCSSCC-------------CEECTTTTTTCTTCCEEECCSSCCCEECTTTT
T ss_pred             CcEEEECCCCcC-ccCCCCC--CCccEEECcCCcC-------------ceECHHHcCCCCCCCEEECCCCccCCcChhhc
Confidence            466777766666 4554432  4566666444443             33445666777777777777777776666777


Q ss_pred             hCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCc-ccc
Q 036117          410 GNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPP-GIC  488 (641)
Q Consensus       410 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~-~~~  488 (641)
                      ..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..++      +|++|++++|...+.++. .+.
T Consensus       120 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~------~L~~L~l~~~~~l~~i~~~~~~  193 (452)
T 3zyi_A          120 NGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVP------SLMRLDLGELKKLEYISEGAFE  193 (452)
T ss_dssp             TTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCT------TCCEEECCCCTTCCEECTTTTT
T ss_pred             cCcccCCEEECCCCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCC------cccEEeCCCCCCccccChhhcc
Confidence            7777777777777777755555677777777777777777654444555555      677777777443333333 466


Q ss_pred             CCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEE
Q 036117          489 RGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNF  568 (641)
Q Consensus       489 ~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L  568 (641)
                      .+++|+.|++++|++.+. | .+..+++|++|++++|++.+..+..|..+++|+.|++++|++++..+..+..+++|++|
T Consensus       194 ~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L  271 (452)
T 3zyi_A          194 GLFNLKYLNLGMCNIKDM-P-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVEL  271 (452)
T ss_dssp             TCTTCCEEECTTSCCSSC-C-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEE
T ss_pred             CCCCCCEEECCCCccccc-c-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEE
Confidence            667777777777776632 3 35666677777777777776666667777777777777777776666666777777777


Q ss_pred             eCcCCcCcccCCccccCCCCCCEEeCCCCcCcc
Q 036117          569 RISGNRIKGGIPAELGNLTYLQNLDIFDNQLTG  601 (641)
Q Consensus       569 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  601 (641)
                      +|++|++++..+..+..+++|+.|+|++|++..
T Consensus       272 ~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  304 (452)
T 3zyi_A          272 NLAHNNLSSLPHDLFTPLRYLVELHLHHNPWNC  304 (452)
T ss_dssp             ECCSSCCSCCCTTSSTTCTTCCEEECCSSCEEC
T ss_pred             ECCCCcCCccChHHhccccCCCEEEccCCCcCC
Confidence            777777765555666667777777777776653

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.94  E-value=2.1e-25  Score=234.53  Aligned_cols=249  Identities=18%  Similarity=0.145  Sum_probs=178.1

Q ss_pred             CCCEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCchhh
Q 036117          329 NLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQ  408 (641)
Q Consensus       329 ~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~  408 (641)
                      ....++.++..++ .+|..+.  +.++.|++++|+++             +..+..+..+++|++|++++|.+++..+..
T Consensus        44 ~~~~v~c~~~~l~-~iP~~~~--~~l~~L~L~~n~i~-------------~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~  107 (440)
T 3zyj_A           44 QFSKVICVRKNLR-EVPDGIS--TNTRLLNLHENQIQ-------------IIKVNSFKHLRHLEILQLSRNHIRTIEIGA  107 (440)
T ss_dssp             TSCEEECCSCCCS-SCCSCCC--TTCSEEECCSCCCC-------------EECTTTTSSCSSCCEEECCSSCCCEECGGG
T ss_pred             CCCEEEeCCCCcC-cCCCCCC--CCCcEEEccCCcCC-------------eeCHHHhhCCCCCCEEECCCCcCCccChhh
Confidence            3567777777777 5665443  56666665555443             334456777788888888888887777777


Q ss_pred             hhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCC-ccc
Q 036117          409 IGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLP-PGI  487 (641)
Q Consensus       409 ~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~-~~~  487 (641)
                      |..+++|++|++++|.+++..+..+..+++|++|++++|.+.+..+..+..+.      +|++|++++|...+.++ ..+
T Consensus       108 ~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~------~L~~L~l~~~~~l~~i~~~~~  181 (440)
T 3zyj_A          108 FNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIP------SLRRLDLGELKRLSYISEGAF  181 (440)
T ss_dssp             GTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCT------TCCEEECCCCTTCCEECTTTT
T ss_pred             ccCCccCCEEECCCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCc------ccCEeCCCCCCCcceeCcchh
Confidence            88888888888888888755555677788888888888887755555566665      78888888754433443 356


Q ss_pred             cCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCE
Q 036117          488 CRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSN  567 (641)
Q Consensus       488 ~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~  567 (641)
                      ..+++|+.|++++|++. .+| .+..+++|++|++++|++.+..+..|..+++|+.|++++|++++..+..+..+++|++
T Consensus       182 ~~l~~L~~L~L~~n~l~-~~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~  259 (440)
T 3zyj_A          182 EGLSNLRYLNLAMCNLR-EIP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVE  259 (440)
T ss_dssp             TTCSSCCEEECTTSCCS-SCC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCE
T ss_pred             hcccccCeecCCCCcCc-ccc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCE
Confidence            67777888888777776 444 3667777777777777777777777777777777777777777777777777777777


Q ss_pred             EeCcCCcCcccCCccccCCCCCCEEeCCCCcCcc
Q 036117          568 FRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTG  601 (641)
Q Consensus       568 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  601 (641)
                      |+|++|++++..+..+..+++|+.|+|++|++..
T Consensus       260 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~C  293 (440)
T 3zyj_A          260 INLAHNNLTLLPHDLFTPLHHLERIHLHHNPWNC  293 (440)
T ss_dssp             EECTTSCCCCCCTTTTSSCTTCCEEECCSSCEEC
T ss_pred             EECCCCCCCccChhHhccccCCCEEEcCCCCccC
Confidence            7777777776666667777777777777777753

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.94  E-value=1.2e-27  Score=239.43  Aligned_cols=244  Identities=18%  Similarity=0.146  Sum_probs=186.0

Q ss_pred             cccccccccCCcCCCCCCCCCEEEccCCcCc-CCchhhhh-------CCCCCCeEecccCcCCccCcccc--cCCCCCCE
Q 036117          372 LQMNDLSGKLPPEIGLLPKLEYLYLFDNKFS-GPIPQQIG-------NLTNLFDLQLANNFFNGSIPSTI--GNLSSLVK  441 (641)
Q Consensus       372 l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~-~~~~~~~~-------~l~~L~~L~l~~n~l~~~~~~~l--~~l~~L~~  441 (641)
                      +++|.+  .+|..+...  |+.|++++|.+. ..++..+.       .+++|++|++++|.+++.+|..+  ..+++|++
T Consensus        50 l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~  125 (312)
T 1wwl_A           50 KRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEATGPDLNI  125 (312)
T ss_dssp             HHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCCSCCCSE
T ss_pred             eccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhcCCCccE
Confidence            444444  344433322  777777777773 33444443       67888888998888887777765  78888999


Q ss_pred             EEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccccCCCCCceEeccCCcccCC--Ccccc--ccCCCC
Q 036117          442 LSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGP--IPESL--WNCTGL  517 (641)
Q Consensus       442 L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~--~~~~l--~~~~~L  517 (641)
                      |++++|.+++. |..+..+.. ...++|++|++++|++++..|..+..+++|+.|++++|++.+.  .|..+  ..+++|
T Consensus       126 L~Ls~N~l~~~-~~~~~~l~~-~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L  203 (312)
T 1wwl_A          126 LNLRNVSWATR-DAWLAELQQ-WLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALCPLKFPTL  203 (312)
T ss_dssp             EEEESCBCSSS-SSHHHHHHT-TCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSCTTSCTTC
T ss_pred             EEccCCCCcch-hHHHHHHHH-hhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHHhccCCCC
Confidence            99999988866 766665510 0012799999999999877778888899999999999987764  23333  788999


Q ss_pred             cEEECCCCcCcc---ccCcccCCCCCCcEEeCCCCcccccCC-hhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEe
Q 036117          518 TRVRLEQNRLDG---DITNALGIYPDLQYIDLGDNQLSGVLT-SNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLD  593 (641)
Q Consensus       518 ~~L~l~~n~l~~---~~~~~~~~l~~L~~L~Ls~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~  593 (641)
                      ++|++++|++.+   .....+..+++|++|++++|++++.+| ..+..+++|++|++++|+++ .+|..+.  ++|++|+
T Consensus       204 ~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~--~~L~~L~  280 (312)
T 1wwl_A          204 QVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP--AKLSVLD  280 (312)
T ss_dssp             CEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC--SEEEEEE
T ss_pred             CEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc--CCceEEE
Confidence            999999999883   222445678999999999999998775 45667889999999999998 7787776  8899999


Q ss_pred             CCCCcCcccCCccccCCCCCCEEeCcCCCCccc
Q 036117          594 IFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDK  626 (641)
Q Consensus       594 L~~n~l~~~ip~~l~~~~~L~~l~l~~n~l~~~  626 (641)
                      +++|++++ +|. +..+++|++|++++|++++.
T Consensus       281 Ls~N~l~~-~p~-~~~l~~L~~L~L~~N~l~~~  311 (312)
T 1wwl_A          281 LSYNRLDR-NPS-PDELPQVGNLSLKGNPFLDS  311 (312)
T ss_dssp             CCSSCCCS-CCC-TTTSCEEEEEECTTCTTTCC
T ss_pred             CCCCCCCC-Chh-HhhCCCCCEEeccCCCCCCC
Confidence            99999985 476 88899999999999999763

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=9.4e-25  Score=236.00  Aligned_cols=265  Identities=28%  Similarity=0.380  Sum_probs=143.0

Q ss_pred             cccEeeeecccccccCccccCCCCCCCeeeccCccCCCCCCcCCCCCCCCCEEEccCccccccCchhhhcCCCCCeEeCC
Q 036117          281 NLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGIS  360 (641)
Q Consensus       281 ~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~  360 (641)
                      +++.|++++|.++ .+|..+.  ++|++|++++|.+.. +|.   .+++|++|++++|+++ .+|.   .+++|++|+++
T Consensus        41 ~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~~-lp~---~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls  109 (622)
T 3g06_A           41 GNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLTS-LPA---LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIF  109 (622)
T ss_dssp             CCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCSC-CCC---CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEEC
T ss_pred             CCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCCC-CCC---cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECc
Confidence            4667777777766 3444443  567777777776653 332   3566777777777666 3443   45566666655


Q ss_pred             cccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCC
Q 036117          361 NNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLV  440 (641)
Q Consensus       361 ~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~  440 (641)
                      +|+++.+              |.   .+++|+.|++++|++++ +|..   +++|++|++++|.+++ +|.   .+++|+
T Consensus       110 ~N~l~~l--------------~~---~l~~L~~L~L~~N~l~~-lp~~---l~~L~~L~Ls~N~l~~-l~~---~~~~L~  164 (622)
T 3g06_A          110 SNPLTHL--------------PA---LPSGLCKLWIFGNQLTS-LPVL---PPGLQELSVSDNQLAS-LPA---LPSELC  164 (622)
T ss_dssp             SCCCCCC--------------CC---CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSC-CCC---CCTTCC
T ss_pred             CCcCCCC--------------CC---CCCCcCEEECCCCCCCc-CCCC---CCCCCEEECcCCcCCC-cCC---ccCCCC
Confidence            5554432              11   34566666666666653 3322   3566666666666653 332   234566


Q ss_pred             EEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEE
Q 036117          441 KLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRV  520 (641)
Q Consensus       441 ~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L  520 (641)
                      .|++++|.+++ +|   ..+.      +|+.|++++|.+++ +|..   .++|+.|++++|.+. .+|..   +++|+.|
T Consensus       165 ~L~L~~N~l~~-l~---~~~~------~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L~~N~l~-~l~~~---~~~L~~L  226 (622)
T 3g06_A          165 KLWAYNNQLTS-LP---MLPS------GLQELSVSDNQLAS-LPTL---PSELYKLWAYNNRLT-SLPAL---PSGLKEL  226 (622)
T ss_dssp             EEECCSSCCSC-CC---CCCT------TCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-SCCCC---CTTCCEE
T ss_pred             EEECCCCCCCC-Cc---ccCC------CCcEEECCCCCCCC-CCCc---cchhhEEECcCCccc-ccCCC---CCCCCEE
Confidence            66666666652 33   1112      56666666666552 3321   245556666665555 23321   2455555


Q ss_pred             ECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCc
Q 036117          521 RLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLT  600 (641)
Q Consensus       521 ~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  600 (641)
                      ++++|++++ +|   ..+++|+.|++++|+++. +|.   .+++|+.|++++|+++ .+|..+.++++|+.|+|++|+++
T Consensus       227 ~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~~-lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~  297 (622)
T 3g06_A          227 IVSGNRLTS-LP---VLPSELKELMVSGNRLTS-LPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLS  297 (622)
T ss_dssp             ECCSSCCSC-CC---CCCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCC
T ss_pred             EccCCccCc-CC---CCCCcCcEEECCCCCCCc-CCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCC
Confidence            666555553 22   334555555555555552 232   3455555555555555 44555555555555555555555


Q ss_pred             ccCCcccc
Q 036117          601 GKIPAQLF  608 (641)
Q Consensus       601 ~~ip~~l~  608 (641)
                      +.+|..+.
T Consensus       298 ~~~~~~l~  305 (622)
T 3g06_A          298 ERTLQALR  305 (622)
T ss_dssp             HHHHHHHH
T ss_pred             CcCHHHHH
Confidence            55554444

>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}

Probab=99.93  E-value=2.6e-27  Score=237.47  Aligned_cols=239  Identities=20%  Similarity=0.165  Sum_probs=131.0

Q ss_pred             CCCCCCCCEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcC
Q 036117          324 LGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSG  403 (641)
Q Consensus       324 l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~  403 (641)
                      +..+++|++|++++|++++..|..+..+++|++|++++|.++..             .  .+..+++|++|++++|++++
T Consensus        30 ~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~-------------~--~~~~l~~L~~L~Ls~n~l~~   94 (317)
T 3o53_A           30 RQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYET-------------L--DLESLSTLRTLDLNNNYVQE   94 (317)
T ss_dssp             HTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEE-------------E--EETTCTTCCEEECCSSEEEE
T ss_pred             hccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcc-------------h--hhhhcCCCCEEECcCCcccc
Confidence            33445666666666666655555566666666666555544322             1  14445566666666665553


Q ss_pred             CchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccC
Q 036117          404 PIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKL  483 (641)
Q Consensus       404 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~  483 (641)
                      ..     ..++|++|++++|.+.+..+.   .+++|++|++++|.+++..+..+..+.      +|++|++++|.+++..
T Consensus        95 l~-----~~~~L~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~------~L~~L~Ls~N~l~~~~  160 (317)
T 3o53_A           95 LL-----VGPSIETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRS------RVQYLDLKLNEIDTVN  160 (317)
T ss_dssp             EE-----ECTTCCEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGS------SEEEEECTTSCCCEEE
T ss_pred             cc-----CCCCcCEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccC------CCCEEECCCCCCCccc
Confidence            22     225666666666666543322   245566666666666544444444444      5666666666665544


Q ss_pred             Ccccc-CCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcC
Q 036117          484 PPGIC-RGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKC  562 (641)
Q Consensus       484 ~~~~~-~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l  562 (641)
                      +..+. .++.|+.|++++|++.+. + ....+++|++|++++|++.+.. ..+..+++|+.|++++|+++ .+|..+..+
T Consensus       161 ~~~~~~~l~~L~~L~L~~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~l~-~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l  236 (317)
T 3o53_A          161 FAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMG-PEFQSAAGVTWISLRNNKLV-LIEKALRFS  236 (317)
T ss_dssp             GGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEEC-GGGGGGTTCSEEECTTSCCC-EECTTCCCC
T ss_pred             HHHHhhccCcCCEEECCCCcCccc-c-cccccccCCEEECCCCcCCcch-hhhcccCcccEEECcCCccc-chhhHhhcC
Confidence            44442 456666666666665533 2 1223556666666666665432 23555666666666666665 344455556


Q ss_pred             CCCCEEeCcCCcCc-ccCCccccCCCCCCEEeCC
Q 036117          563 TNLSNFRISGNRIK-GGIPAELGNLTYLQNLDIF  595 (641)
Q Consensus       563 ~~L~~L~L~~n~l~-~~~p~~l~~l~~L~~L~L~  595 (641)
                      ++|+.|++++|++. +.+|..+..++.|+.++++
T Consensus       237 ~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~  270 (317)
T 3o53_A          237 QNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (317)
T ss_dssp             TTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHH
T ss_pred             CCCCEEEccCCCccCcCHHHHHhccccceEEECC
Confidence            66666666666665 4555555666666666665

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.93  E-value=7.1e-25  Score=214.40  Aligned_cols=216  Identities=24%  Similarity=0.309  Sum_probs=163.6

Q ss_pred             CCCccccceeeCCCCCEEEEEcCCCCCccccCCcCCCCCCCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCC
Q 036117           49 SGPCNWNGIQCNEVGSISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPI  128 (641)
Q Consensus        49 ~~~c~~~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~  128 (641)
                      .++|.|.|+.|...+..+.++++++.++ .+| ..+.  +++++|++++|.+.+..+..|..+++|++|++++|.++...
T Consensus         2 ~~~C~~~~~~C~c~~~~~~l~~~~~~l~-~ip-~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~   77 (270)
T 2o6q_A            2 EALCKKDGGVCSCNNNKNSVDCSSKKLT-AIP-SNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP   77 (270)
T ss_dssp             CCCBGGGTCSBEEETTTTEEECTTSCCS-SCC-SCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred             CccCCCCCCCCEeCCCCCEEEccCCCCC-ccC-CCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence            4789999999876667788999998887 355 3332  67899999999988766678888999999999999988655


Q ss_pred             ccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEeccccCCCCCCcccCCCCCCCEEEcCCCCCCCCchh-hcCCC
Q 036117          129 PPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSF-IAECS  207 (641)
Q Consensus       129 p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~-l~~~~  207 (641)
                      +..|..+++|++|++++|.+++..+..+.++++|++|++++|.+....+..|..+++|++|++++|.+..++.. +..++
T Consensus        78 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~  157 (270)
T 2o6q_A           78 AGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLT  157 (270)
T ss_dssp             TTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred             hhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCc
Confidence            55668889999999999988877777788888888888888888888777788888888888888887766653 56677


Q ss_pred             CCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCcccccCCcccCCCCCCCEEEcCCCcCC
Q 036117          208 KLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLT  269 (641)
Q Consensus       208 ~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~  269 (641)
                      +|++|++++|.+. .++...+..+++|++|++++|.+++..+..+..+++|+.|++++|.+.
T Consensus       158 ~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~  218 (270)
T 2o6q_A          158 SLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWD  218 (270)
T ss_dssp             TCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred             ccceeEecCCcCc-EeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCee
Confidence            7777777777766 344444566666777777776666544445666666666666666554

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.93  E-value=1.3e-26  Score=245.83  Aligned_cols=228  Identities=20%  Similarity=0.145  Sum_probs=109.4

Q ss_pred             CCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCC
Q 036117          389 PKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRF  468 (641)
Q Consensus       389 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~  468 (641)
                      ++|++|++++|.+++..|..|..+++|+.|++++|.+++..+  +..+++|++|++++|.+++..+     .+      +
T Consensus        34 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~------~  100 (487)
T 3oja_A           34 WNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GP------S  100 (487)
T ss_dssp             GGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CT------T
T ss_pred             CCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CC------C
Confidence            345555555555554444445555555555555555543332  4445555555555554442111     11      4


Q ss_pred             ccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccC-CCCCCcEEeCC
Q 036117          469 LRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALG-IYPDLQYIDLG  547 (641)
Q Consensus       469 L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~-~l~~L~~L~Ls  547 (641)
                      |++|++++|.+++..+.   .+++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..|..+. .+++|+.|+++
T Consensus       101 L~~L~L~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls  177 (487)
T 3oja_A          101 IETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQ  177 (487)
T ss_dssp             CCEEECCSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECT
T ss_pred             cCEEECcCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecC
Confidence            55555555555433221   234455555555555544444455555555555555555554444443 45555555555


Q ss_pred             CCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCccccCCCCCCEEeCcCCCCc-cc
Q 036117          548 DNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLS-DK  626 (641)
Q Consensus       548 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~~~L~~l~l~~n~l~-~~  626 (641)
                      +|.+++..+  +..+++|++|++++|.+++. |..+..+++|+.|+|++|.+++ +|..+..+++|+.|++++|++. +.
T Consensus       178 ~N~l~~~~~--~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~  253 (487)
T 3oja_A          178 YNFIYDVKG--QVVFAKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGT  253 (487)
T ss_dssp             TSCCCEEEC--CCCCTTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHH
T ss_pred             CCccccccc--cccCCCCCEEECCCCCCCCC-CHhHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcc
Confidence            555554422  22345555555555555532 2234555555555555555542 4444455555555555555554 44


Q ss_pred             CcccccCCCC
Q 036117          627 IPAEIGKLSR  636 (641)
Q Consensus       627 ~p~~~~~l~~  636 (641)
                      +|..+..++.
T Consensus       254 ~~~~~~~l~~  263 (487)
T 3oja_A          254 LRDFFSKNQR  263 (487)
T ss_dssp             HHHHHTTCHH
T ss_pred             hHHHHHhCCC
Confidence            4444444433

>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}

Probab=99.93  E-value=3.3e-27  Score=236.09  Aligned_cols=240  Identities=21%  Similarity=0.242  Sum_probs=203.6

Q ss_pred             CCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCC-ccCccccc-------CCCCCCEEEccCCcCcccCCcch
Q 036117          386 GLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFN-GSIPSTIG-------NLSSLVKLSLSSNQLTGTLPPEI  457 (641)
Q Consensus       386 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~-------~l~~L~~L~ls~n~l~~~~~~~~  457 (641)
                      +..++|+++++++|.+  .+|..+...  |+.|++++|.+. ..++..+.       .+++|++|++++|.+++.+|..+
T Consensus        40 ~~~~~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~  115 (312)
T 1wwl_A           40 GGGRSLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL  115 (312)
T ss_dssp             EEEEECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred             ccCCCceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence            4457899999999999  667666543  999999999984 45666555       78999999999999999898876


Q ss_pred             --hcCCCCCCCCCccEEEccCCcccccCCccccCC-----CCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccc
Q 036117          458 --GNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRG-----GNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGD  530 (641)
Q Consensus       458 --~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~-----~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~  530 (641)
                        ..++      +|++|++++|++++. |..+..+     ++|++|++++|++.+..|..+.++++|++|++++|++.+.
T Consensus       116 ~~~~l~------~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~  188 (312)
T 1wwl_A          116 LEATGP------DLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGE  188 (312)
T ss_dssp             SSCCSC------CCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHH
T ss_pred             HHhcCC------CccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcc
Confidence              6666      899999999999976 7777766     8999999999999988889999999999999999998765


Q ss_pred             --cCccc--CCCCCCcEEeCCCCccccc---CChhhhcCCCCCEEeCcCCcCcccCC-ccccCCCCCCEEeCCCCcCccc
Q 036117          531 --ITNAL--GIYPDLQYIDLGDNQLSGV---LTSNWGKCTNLSNFRISGNRIKGGIP-AELGNLTYLQNLDIFDNQLTGK  602 (641)
Q Consensus       531 --~~~~~--~~l~~L~~L~Ls~n~~~~~---~~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~  602 (641)
                        .+..+  +.+++|++|++++|++++.   ....+..+++|++|++++|++++..| ..+..+++|++|++++|.++ .
T Consensus       189 ~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~  267 (312)
T 1wwl_A          189 RGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-Q  267 (312)
T ss_dssp             HHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-S
T ss_pred             hHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-h
Confidence              23334  8899999999999999832   22344678999999999999998775 55677899999999999998 8


Q ss_pred             CCccccCCCCCCEEeCcCCCCcccCcccccCCCCCcCCC
Q 036117          603 IPAQLFRSSFLIRLNLRRNQLSDKIPAEIGKLSRLQYLD  641 (641)
Q Consensus       603 ip~~l~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~l~  641 (641)
                      +|..+.  ++|+.|++++|++++. |. ++.+++|+.||
T Consensus       268 ip~~~~--~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~  302 (312)
T 1wwl_A          268 VPKGLP--AKLSVLDLSYNRLDRN-PS-PDELPQVGNLS  302 (312)
T ss_dssp             CCSSCC--SEEEEEECCSSCCCSC-CC-TTTSCEEEEEE
T ss_pred             hhhhcc--CCceEEECCCCCCCCC-hh-HhhCCCCCEEe
Confidence            998877  8999999999999976 76 88999988764

>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*

Probab=99.93  E-value=1.9e-28  Score=268.88  Aligned_cols=424  Identities=13%  Similarity=0.090  Sum_probs=290.2

Q ss_pred             hccCCCCCcEEEeccccCC-CC--CC------------cccCCCCCCCEEEcCCCCCCCC-chhhc-CCCCCcEEEeeCC
Q 036117          155 QLSNLQNAWLLRIGANYLE-DP--DP------------VKFKGMASLTDLWLDYNLLEKF-PSFIA-ECSKLMFLDLSDN  217 (641)
Q Consensus       155 ~l~~l~~L~~L~l~~n~~~-~~--~~------------~~l~~l~~L~~L~l~~~~~~~l-~~~l~-~~~~L~~L~l~~~  217 (641)
                      .+..+++|++|+++++... +.  .+            .....+++|++|++++|.+... +..+. .+++|++|++++|
T Consensus        61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~  140 (594)
T 2p1m_B           61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSC  140 (594)
T ss_dssp             HHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESC
T ss_pred             HHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCc
Confidence            4567889999999987521 11  11            1124578999999999987432 33443 6899999999999


Q ss_pred             -cCCCCCChhhhcCCCCCcEEeccCCcccccCCccc----CCCCCCCEEEcCCCc--CCcc-CCcccCCCCcccEeeeec
Q 036117          218 -LIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREI----KTFPKLRHLKLGQNK--LTGT-IPDEIGLLSNLEILEFHE  289 (641)
Q Consensus       218 -~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l----~~l~~L~~L~L~~~~--l~~~-~~~~l~~~~~L~~L~l~~  289 (641)
                       .+..........++++|++|++++|.+++..+.++    ..+++|++|++++|.  +... +......+++|++|++++
T Consensus       141 ~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~  220 (594)
T 2p1m_B          141 EGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNR  220 (594)
T ss_dssp             EEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCT
T ss_pred             CCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCC
Confidence             44422223444679999999999999776554444    367899999999986  2211 111124579999999999


Q ss_pred             ccccccCccccCCCCCCCeeeccCccC-------CCCCCcCCCCCCCCCEE-EccCccccccCchhhhcCCCCCeEeCCc
Q 036117          290 NLFHGLIPSSLGNLRRLQRLNLKSAGL-------NSSIPKELGFCANLTFL-ELSINNLTGSLPLSLASLRQISELGISN  361 (641)
Q Consensus       290 n~~~~~~~~~l~~l~~L~~L~l~~~~~-------~~~~~~~l~~~~~L~~L-~l~~n~l~~~~~~~l~~~~~L~~L~l~~  361 (641)
                      |...+.++..+..+++|++|++..+..       .+ ++..+..+++|+.+ .+.+... +.++..+..+++|++|++++
T Consensus       221 ~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~-~~l~~~~~~~~~L~~L~L~~  298 (594)
T 2p1m_B          221 AVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSG-LSVALSGCKELRCLSGFWDAVP-AYLPAVYSVCSRLTTLNLSY  298 (594)
T ss_dssp             TSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHH-HHHHHHTCTTCCEEECCBTCCG-GGGGGGHHHHTTCCEEECTT
T ss_pred             CCcHHHHHHHHhcCCcceEcccccccCccchhhHHH-HHHHHhcCCCcccccCCcccch-hhHHHHHHhhCCCCEEEccC
Confidence            843334677778889999999765532       12 23356788999998 4443322 34555566789999999888


Q ss_pred             ccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCC-chhhhhCCCCCCeEeccc---------CcCCccCcc
Q 036117          362 NQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGP-IPQQIGNLTNLFDLQLAN---------NFFNGSIPS  431 (641)
Q Consensus       362 n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~---------n~l~~~~~~  431 (641)
                      |.++..            .+...+..+++|++|++++| +++. ++.....+++|++|++.+         +.+++....
T Consensus       299 ~~l~~~------------~l~~~~~~~~~L~~L~l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~  365 (594)
T 2p1m_B          299 ATVQSY------------DLVKLLCQCPKLQRLWVLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLV  365 (594)
T ss_dssp             CCCCHH------------HHHHHHTTCTTCCEEEEEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHH
T ss_pred             CCCCHH------------HHHHHHhcCCCcCEEeCcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHH
Confidence            764421            11123457899999999988 4433 233334689999999944         344433222


Q ss_pred             cc-cCCCCCCEEEccCCcCcccCCcchh-cCCCCCCCCCccEEEcc--C----Ccccc-----cCCccccCCCCCceEec
Q 036117          432 TI-GNLSSLVKLSLSSNQLTGTLPPEIG-NSKSDFGPRFLRNVSFS--Y----NNFSG-----KLPPGICRGGNLIYLTA  498 (641)
Q Consensus       432 ~l-~~l~~L~~L~ls~n~l~~~~~~~~~-~~~~~~~~~~L~~L~ls--~----n~l~~-----~~~~~~~~~~~L~~L~l  498 (641)
                      .+ ..+++|++|+++.+.+++..+..+. .++      +|++|+++  +    +.+++     .++..+..+++|+.|++
T Consensus       366 ~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~------~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L  439 (594)
T 2p1m_B          366 SVSMGCPKLESVLYFCRQMTNAALITIARNRP------NMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSL  439 (594)
T ss_dssp             HHHHHCTTCCEEEEEESCCCHHHHHHHHHHCT------TCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEEC
T ss_pred             HHHHhchhHHHHHHhcCCcCHHHHHHHHhhCC------CcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEee
Confidence            23 3489999999988888766555554 355      89999999  3    44542     12223567889999999


Q ss_pred             cCCcccCCCcccccc-CCCCcEEECCCCcCccccCccc-CCCCCCcEEeCCCCcccccCCh-hhhcCCCCCEEeCcCCcC
Q 036117          499 NVNKLVGPIPESLWN-CTGLTRVRLEQNRLDGDITNAL-GIYPDLQYIDLGDNQLSGVLTS-NWGKCTNLSNFRISGNRI  575 (641)
Q Consensus       499 ~~n~~~~~~~~~l~~-~~~L~~L~l~~n~l~~~~~~~~-~~l~~L~~L~Ls~n~~~~~~~~-~~~~l~~L~~L~L~~n~l  575 (641)
                      ++ .+.+..+..+.. +++|+.|++++|.+++..+..+ ..+++|++|++++|++++..+. ....+++|++|++++|++
T Consensus       440 ~~-~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~  518 (594)
T 2p1m_B          440 SG-LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSV  518 (594)
T ss_dssp             CS-SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCC
T ss_pred             cC-cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCC
Confidence            77 665555555555 8999999999999876555444 5689999999999999765444 345689999999999998


Q ss_pred             cccCCccc-cCCCCCCEEeCCCCcCc
Q 036117          576 KGGIPAEL-GNLTYLQNLDIFDNQLT  600 (641)
Q Consensus       576 ~~~~p~~l-~~l~~L~~L~L~~n~l~  600 (641)
                      +......+ ..++.++...+..+...
T Consensus       519 ~~~~~~~l~~~lp~l~i~~~~~~~~~  544 (594)
T 2p1m_B          519 SFGACKLLGQKMPKLNVEVIDERGAP  544 (594)
T ss_dssp             BHHHHHHHHHHCTTEEEEEECSSSCG
T ss_pred             CHHHHHHHHHhCCCCEEEEecCCCcc
Confidence            64433444 56788877777766544

>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}

Probab=99.93  E-value=2.1e-24  Score=233.27  Aligned_cols=281  Identities=27%  Similarity=0.280  Sum_probs=148.4

Q ss_pred             CCCccccceeeC-------CCCCEEEEEcCCCCCccccCCcCCCCCCCCCEEECCCCCCCccCchhccCCCCCCEEECCC
Q 036117           49 SGPCNWNGIQCN-------EVGSISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSS  121 (641)
Q Consensus        49 ~~~c~~~gv~c~-------~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~  121 (641)
                      .++|.|+|..|.       ....++.++++++++. .+| ..+.  ++|++|++++|.++ .+|.   .+++|++|++++
T Consensus        19 ~~~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp-~~l~--~~L~~L~L~~N~l~-~lp~---~l~~L~~L~Ls~   90 (622)
T 3g06_A           19 APAEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLP-DCLP--AHITTLVIPDNNLT-SLPA---LPPELRTLEVSG   90 (622)
T ss_dssp             CCGGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCC-SCCC--TTCSEEEECSCCCS-CCCC---CCTTCCEEEECS
T ss_pred             CCcchhccccccCcccccccCCCCcEEEecCCCcC-ccC-hhhC--CCCcEEEecCCCCC-CCCC---cCCCCCEEEcCC
Confidence            467888664321       0234677777777776 444 3332  67777777777766 3444   456677777777


Q ss_pred             CcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEeccccCCCCCCcccCCCCCCCEEEcCCCCCCCCch
Q 036117          122 NNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPS  201 (641)
Q Consensus       122 n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~  201 (641)
                      |.++ .+|.   .+++|++|++++|.+++. |.   .+++|++|++++|.++.++.    .+++|++|++++|.+..+|.
T Consensus        91 N~l~-~lp~---~l~~L~~L~Ls~N~l~~l-~~---~l~~L~~L~L~~N~l~~lp~----~l~~L~~L~Ls~N~l~~l~~  158 (622)
T 3g06_A           91 NQLT-SLPV---LPPGLLELSIFSNPLTHL-PA---LPSGLCKLWIFGNQLTSLPV----LPPGLQELSVSDNQLASLPA  158 (622)
T ss_dssp             CCCS-CCCC---CCTTCCEEEECSCCCCCC-CC---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC
T ss_pred             CcCC-cCCC---CCCCCCEEECcCCcCCCC-CC---CCCCcCEEECCCCCCCcCCC----CCCCCCEEECcCCcCCCcCC
Confidence            7766 3444   456677777776666642 22   44556666666665554332    12555555555555554443


Q ss_pred             hhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCcccccCCcccCCCCCCCEEEcCCCcCCccCCcccCCCCc
Q 036117          202 FIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSN  281 (641)
Q Consensus       202 ~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~  281 (641)
                         .+++|+.|++++|.+. .++    ..+++|+.|++++|.+++ +|.   .                        .++
T Consensus       159 ---~~~~L~~L~L~~N~l~-~l~----~~~~~L~~L~Ls~N~l~~-l~~---~------------------------~~~  202 (622)
T 3g06_A          159 ---LPSELCKLWAYNNQLT-SLP----MLPSGLQELSVSDNQLAS-LPT---L------------------------PSE  202 (622)
T ss_dssp             ---CCTTCCEEECCSSCCS-CCC----CCCTTCCEEECCSSCCSC-CCC---C------------------------CTT
T ss_pred             ---ccCCCCEEECCCCCCC-CCc----ccCCCCcEEECCCCCCCC-CCC---c------------------------cch
Confidence               2234555555555544 233    223444455555444442 222   1                        244


Q ss_pred             ccEeeeecccccccCccccCCCCCCCeeeccCccCCCCCCcCCCCCCCCCEEEccCccccccCchhhhcCCCCCeEeCCc
Q 036117          282 LEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISN  361 (641)
Q Consensus       282 L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~  361 (641)
                      |+.|++++|.+... |.   .+++|++|++++|.+.+ +|   ..+++|+.|++++|+++ .+|.   .+++|+.|++++
T Consensus       203 L~~L~L~~N~l~~l-~~---~~~~L~~L~Ls~N~L~~-lp---~~l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~  270 (622)
T 3g06_A          203 LYKLWAYNNRLTSL-PA---LPSGLKELIVSGNRLTS-LP---VLPSELKELMVSGNRLT-SLPM---LPSGLLSLSVYR  270 (622)
T ss_dssp             CCEEECCSSCCSSC-CC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCS-CCCC---CCTTCCEEECCS
T ss_pred             hhEEECcCCccccc-CC---CCCCCCEEEccCCccCc-CC---CCCCcCcEEECCCCCCC-cCCc---ccccCcEEeCCC
Confidence            45555555544422 21   12455555555555543 22   23355666666666555 3333   345555555444


Q ss_pred             ccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCchhhhhC
Q 036117          362 NQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGN  411 (641)
Q Consensus       362 n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~  411 (641)
                      |+++              .+|..+..+++|+.|++++|.+++..+..+..
T Consensus       271 N~L~--------------~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~  306 (622)
T 3g06_A          271 NQLT--------------RLPESLIHLSSETTVNLEGNPLSERTLQALRE  306 (622)
T ss_dssp             SCCC--------------SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHH
T ss_pred             CCCC--------------cCCHHHhhccccCEEEecCCCCCCcCHHHHHh
Confidence            4433              23455556666777777777766666655543

>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}

Probab=99.92  E-value=1.9e-25  Score=236.91  Aligned_cols=217  Identities=17%  Similarity=0.189  Sum_probs=146.0

Q ss_pred             cCCCCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCC
Q 036117          383 PEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKS  462 (641)
Q Consensus       383 ~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~  462 (641)
                      ..+..+++|++|++++|.+++..|  +..+++|++|++++|.+++. +    ..++|++|++++|.+++..+..   ++ 
T Consensus        52 ~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l-~----~~~~L~~L~L~~N~l~~~~~~~---l~-  120 (487)
T 3oja_A           52 ADLAPFTKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQEL-L----VGPSIETLHAANNNISRVSCSR---GQ-  120 (487)
T ss_dssp             GGGTTCTTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEE-E----ECTTCCEEECCSSCCCCEEECC---CS-
T ss_pred             HHHhCCCCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCC-C----CCCCcCEEECcCCcCCCCCccc---cC-
Confidence            344455555555555555554433  55555566666666555532 1    1256666666666665433221   12 


Q ss_pred             CCCCCCccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccc-cCCCCcEEECCCCcCccccCcccCCCCCC
Q 036117          463 DFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLW-NCTGLTRVRLEQNRLDGDITNALGIYPDL  541 (641)
Q Consensus       463 ~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~-~~~~L~~L~l~~n~l~~~~~~~~~~l~~L  541 (641)
                           +|++|++++|.+++..|..+..+++|+.|++++|.+.+..|..+. .+++|+.|++++|.+++..+  ...+++|
T Consensus       121 -----~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~L~~L~Ls~N~l~~~~~--~~~l~~L  193 (487)
T 3oja_A          121 -----GKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDVKG--QVVFAKL  193 (487)
T ss_dssp             -----SCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEEEC--CCCCTTC
T ss_pred             -----CCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCcccEEecCCCccccccc--cccCCCC
Confidence                 577777777777666666667777777777777777776666665 67888888888888876532  3357888


Q ss_pred             cEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCc-ccCCccccCCCCCCEEeCc
Q 036117          542 QYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLT-GKIPAQLFRSSFLIRLNLR  619 (641)
Q Consensus       542 ~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~-~~ip~~l~~~~~L~~l~l~  619 (641)
                      +.|++++|.+++..| .+..+++|+.|++++|.+++ +|..+..+++|+.|++++|++. +.+|..+..++.|+.++++
T Consensus       194 ~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~  270 (487)
T 3oja_A          194 KTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ  270 (487)
T ss_dssp             CEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred             CEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence            888888888886544 47788888888888888874 6777888888888888888887 5677777777777777775

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=2.2e-23  Score=204.75  Aligned_cols=209  Identities=18%  Similarity=0.137  Sum_probs=136.8

Q ss_pred             CCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCC
Q 036117          389 PKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRF  468 (641)
Q Consensus       389 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~  468 (641)
                      ++|++|++++|++++..+..|..+++|++|++++|.+.+..+..+..+++|++|++++|.+++..+..+..+.      +
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------~  101 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS------S  101 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT------T
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCc------c
Confidence            4688888888888766666777788888888888887766666677777888888888877766656666655      6


Q ss_pred             ccEEEccCCcccccCCccccCCCCCceEeccCCcccC-CCccccccCCCCcEEECCCCcCccccCcccCCCCCCc----E
Q 036117          469 LRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVG-PIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQ----Y  543 (641)
Q Consensus       469 L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~-~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~----~  543 (641)
                      |++|++++|.+.+..+..+..+++|+.|++++|++.+ .+|..+.++++|++|++++|++.+..+..+..+++|+    .
T Consensus       102 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~  181 (276)
T 2z62_A          102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS  181 (276)
T ss_dssp             CCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEE
T ss_pred             ccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcccccee
Confidence            7777777777765544456666666666666666654 2466666666666666666666655555555444444    6


Q ss_pred             EeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCC
Q 036117          544 IDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIP  604 (641)
Q Consensus       544 L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip  604 (641)
                      |++++|++++..+..+. ..+|++|++++|.+++..+..++.+++|+.|++++|++.+..|
T Consensus       182 L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~  241 (276)
T 2z62_A          182 LDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  241 (276)
T ss_dssp             EECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCTT
T ss_pred             eecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccCC
Confidence            66666666654444333 2356666666666664444445666666666666666665443

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.91  E-value=7e-24  Score=207.46  Aligned_cols=208  Identities=24%  Similarity=0.222  Sum_probs=107.5

Q ss_pred             CCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCC
Q 036117          387 LLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGP  466 (641)
Q Consensus       387 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~  466 (641)
                      .+++|+.|++++|.+...  ..+..+++|++|++++|.+.+ + ..+..+++|++|++++|.+++..+..          
T Consensus        39 ~l~~L~~L~l~~~~i~~~--~~l~~l~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~L~~n~l~~~~~~~----------  104 (272)
T 3rfs_A           39 ELNSIDQIIANNSDIKSV--QGIQYLPNVRYLALGGNKLHD-I-SALKELTNLTYLILTGNQLQSLPNGV----------  104 (272)
T ss_dssp             HHTTCCEEECTTSCCCCC--TTGGGCTTCCEEECTTSCCCC-C-GGGTTCTTCCEEECTTSCCCCCCTTT----------
T ss_pred             cccceeeeeeCCCCcccc--cccccCCCCcEEECCCCCCCC-c-hhhcCCCCCCEEECCCCccCccChhH----------
Confidence            345566666666655422  234555666666666665553 2 24555555555555555555333333          


Q ss_pred             CCccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeC
Q 036117          467 RFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDL  546 (641)
Q Consensus       467 ~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  546 (641)
                                          +..+++|++|++++|++.+..+..+..+++|++|++++|++.+..+..++.+++|++|++
T Consensus       105 --------------------~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l  164 (272)
T 3rfs_A          105 --------------------FDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTELDL  164 (272)
T ss_dssp             --------------------TTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred             --------------------hcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCEEEC
Confidence                                344444444444444444444444455555555555555555444444455555555555


Q ss_pred             CCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCccccCCCCCCEEeCcCCCCccc
Q 036117          547 GDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDK  626 (641)
Q Consensus       547 s~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~~~L~~l~l~~n~l~~~  626 (641)
                      ++|++++..+..++.+++|++|++++|++++..|..++.+++|+.|++++|++.+..       +.++.++++.|+++|.
T Consensus       165 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~-------~~l~~l~~~~n~~~g~  237 (272)
T 3rfs_A          165 SYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDCTC-------PGIRYLSEWINKHSGV  237 (272)
T ss_dssp             CSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT-------TTTHHHHHHHHHTGGG
T ss_pred             CCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccccC-------cHHHHHHHHHHhCCCc
Confidence            555555544444555555555555555555544444555555555555555554332       2345555555555555


Q ss_pred             CcccccCCC
Q 036117          627 IPAEIGKLS  635 (641)
Q Consensus       627 ~p~~~~~l~  635 (641)
                      +|..++.++
T Consensus       238 ip~~~~~~~  246 (272)
T 3rfs_A          238 VRNSAGSVA  246 (272)
T ss_dssp             BBCTTSCBC
T ss_pred             ccCcccccC
Confidence            555555443

>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*

Probab=99.91  E-value=2.3e-23  Score=204.58  Aligned_cols=208  Identities=15%  Similarity=0.100  Sum_probs=113.6

Q ss_pred             CCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccccCCCC
Q 036117          413 TNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGN  492 (641)
Q Consensus       413 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~  492 (641)
                      +++++|++++|.+++..+..+.++++|++|++++|.+.+..+..+..+.      +|++|++++|.+++..+..+..+++
T Consensus        28 ~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~------~L~~L~L~~n~l~~~~~~~~~~l~~  101 (276)
T 2z62_A           28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLS------HLSTLILTGNPIQSLALGAFSGLSS  101 (276)
T ss_dssp             TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCT------TCCEEECTTCCCCEECTTTTTTCTT
T ss_pred             CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCc------CCCEEECCCCccCccChhhhcCCcc
Confidence            3455666666665544444555556666666666655544444444444      5666666666655555555555566


Q ss_pred             CceEeccCCcccCCCccccccCCCCcEEECCCCcCccc-cCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCC----E
Q 036117          493 LIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGD-ITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLS----N  567 (641)
Q Consensus       493 L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~-~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~----~  567 (641)
                      |+.|++++|++.+..+..+.++++|++|++++|.+.+. +|..++.+++|++|++++|++++..+..+..+++|+    +
T Consensus       102 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~  181 (276)
T 2z62_A          102 LQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLS  181 (276)
T ss_dssp             CCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEE
T ss_pred             ccEEECCCCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHHhhhhhhcccccee
Confidence            66666666655554444555556666666666655542 355555556666666666665555555555555554    5


Q ss_pred             EeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCccccCCCCCCEEeCcCCCCcccC
Q 036117          568 FRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKI  627 (641)
Q Consensus       568 L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~~~L~~l~l~~n~l~~~~  627 (641)
                      |++++|++.+..+..+. ..+|++|++++|.+++..+..+..+++|+.|++++|++++..
T Consensus       182 L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  240 (276)
T 2z62_A          182 LDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC  240 (276)
T ss_dssp             EECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBCCCT
T ss_pred             eecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhcccccccEEEccCCcccccC
Confidence            56666665543333332 235666666666655332333445556666666666655443

>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}

Probab=99.90  E-value=4.1e-22  Score=194.73  Aligned_cols=206  Identities=21%  Similarity=0.183  Sum_probs=165.9

Q ss_pred             CCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCC
Q 036117          389 PKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRF  468 (641)
Q Consensus       389 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~  468 (641)
                      ...+.++++++.++ .+|..+.  +++++|++++|.+.+..+..+..+++|++|++++|.++...+..+..+.      +
T Consensus        16 ~~~~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~------~   86 (270)
T 2o6q_A           16 NNKNSVDCSSKKLT-AIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELK------N   86 (270)
T ss_dssp             TTTTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCT------T
T ss_pred             CCCCEEEccCCCCC-ccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCC------C
Confidence            35788999999888 4555443  6799999999999866666888999999999999988744444445566      8


Q ss_pred             ccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCC
Q 036117          469 LRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGD  548 (641)
Q Consensus       469 L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~  548 (641)
                      |++|++++|.+++..+..+..+++|+.|++++|++.+..+..+..+++|++|++++|.+.+..+..++.+++|+.|++++
T Consensus        87 L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~  166 (270)
T 2o6q_A           87 LETLWVTDNKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYN  166 (270)
T ss_dssp             CCEEECCSSCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEECCCCcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecC
Confidence            99999999988865556677888888899988888877777788888888888888888876666778888888888888


Q ss_pred             CcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccC
Q 036117          549 NQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKI  603 (641)
Q Consensus       549 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i  603 (641)
                      |++++..+..+..+++|++|++++|++++..+..+..+++|+.|++++|++....
T Consensus       167 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c  221 (270)
T 2o6q_A          167 NQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTC  221 (270)
T ss_dssp             SCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSS
T ss_pred             CcCcEeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCC
Confidence            8888777777888888888888888888666666888888888888888886543

>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A

Probab=99.89  E-value=9.7e-23  Score=199.36  Aligned_cols=226  Identities=21%  Similarity=0.219  Sum_probs=156.1

Q ss_pred             CCEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCchhhh
Q 036117          330 LTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQI  409 (641)
Q Consensus       330 L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~  409 (641)
                      +..+++..+.+.+.  .....+++|+.|++++|.++.+               +.+..+++|++|++++|.+++.  ..+
T Consensus        21 l~~l~l~~~~~~~~--~~~~~l~~L~~L~l~~~~i~~~---------------~~l~~l~~L~~L~l~~n~l~~~--~~l   81 (272)
T 3rfs_A           21 TIKANLKKKSVTDA--VTQNELNSIDQIIANNSDIKSV---------------QGIQYLPNVRYLALGGNKLHDI--SAL   81 (272)
T ss_dssp             HHHHHHTCSCTTSE--ECHHHHTTCCEEECTTSCCCCC---------------TTGGGCTTCCEEECTTSCCCCC--GGG
T ss_pred             HHHHHhcCcccccc--cccccccceeeeeeCCCCcccc---------------cccccCCCCcEEECCCCCCCCc--hhh
Confidence            33444555555433  2355788899999888876654               3467789999999999999864  478


Q ss_pred             hCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccccC
Q 036117          410 GNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICR  489 (641)
Q Consensus       410 ~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~  489 (641)
                      ..+++|++|++++|.+++..+..+..+++|++|++++|.+++..+..+..+.      +|++|++++|.+++        
T Consensus        82 ~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~------~L~~L~L~~n~l~~--------  147 (272)
T 3rfs_A           82 KELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLT------NLTYLNLAHNQLQS--------  147 (272)
T ss_dssp             TTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT------TCCEEECCSSCCCC--------
T ss_pred             cCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCC------CCCEEECCCCccCc--------
Confidence            8999999999999999977777789999999999999988755544455444      56666666555543        


Q ss_pred             CCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEe
Q 036117          490 GGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFR  569 (641)
Q Consensus       490 ~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~  569 (641)
                                      ..+..+..+++|+.|++++|++++..+..++.+++|++|++++|++++..+..+..+++|++|+
T Consensus       148 ----------------~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~  211 (272)
T 3rfs_A          148 ----------------LPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIW  211 (272)
T ss_dssp             ----------------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEE
T ss_pred             ----------------cCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEE
Confidence                            3333445556666666666666655555556666666666666666666666666666777777


Q ss_pred             CcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCccccCCC
Q 036117          570 ISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSS  611 (641)
Q Consensus       570 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~~  611 (641)
                      +++|++.+.       +++|+.+++..|.++|.+|.+++.+.
T Consensus       212 l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~~~~~~  246 (272)
T 3rfs_A          212 LHDNPWDCT-------CPGIRYLSEWINKHSGVVRNSAGSVA  246 (272)
T ss_dssp             CCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred             ccCCCcccc-------CcHHHHHHHHHHhCCCcccCcccccC
Confidence            777766533       34566677777777777776666553

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.89  E-value=3.1e-22  Score=197.26  Aligned_cols=204  Identities=19%  Similarity=0.170  Sum_probs=156.4

Q ss_pred             CCCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCC
Q 036117          385 IGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDF  464 (641)
Q Consensus       385 l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~  464 (641)
                      +..++++++++++++.++ .+|..+.  +.++.|++++|.+.+..+..+..+++|++|++++|.+++..+.  ..+.   
T Consensus         6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~--~~l~---   77 (290)
T 1p9a_G            6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD--GTLP---   77 (290)
T ss_dssp             EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--SCCT---
T ss_pred             ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--CCCC---
Confidence            456788999999999887 4454443  6889999999999877778888899999999999988743221  3333   


Q ss_pred             CCCCccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEE
Q 036117          465 GPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYI  544 (641)
Q Consensus       465 ~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  544 (641)
                         +|++|++++|+++ .+|..+..+++|+.|++++|++.+..+..|.++++|++|++++|++.+..+..|..+++|+.|
T Consensus        78 ---~L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L  153 (290)
T 1p9a_G           78 ---VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKL  153 (290)
T ss_dssp             ---TCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEE
T ss_pred             ---cCCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEE
Confidence               7888888888887 677777777888888888888876666777778888888888888876666667777888888


Q ss_pred             eCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcc
Q 036117          545 DLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTG  601 (641)
Q Consensus       545 ~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  601 (641)
                      ++++|++++..+..+..+++|++|++++|+++ .+|..+..+++|+.++|++|++..
T Consensus       154 ~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          154 SLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             ECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             ECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence            88888887666666677788888888888877 667777777778888888887753

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.89  E-value=2.2e-24  Score=220.46  Aligned_cols=263  Identities=16%  Similarity=0.140  Sum_probs=164.9

Q ss_pred             EEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCC-CCCEEEccCCcCcCCchhhhh
Q 036117          332 FLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLP-KLEYLYLFDNKFSGPIPQQIG  410 (641)
Q Consensus       332 ~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~-~L~~L~L~~n~l~~~~~~~~~  410 (641)
                      .++++.|.+++.+|..+...++|++|++++|.++....-         .+...+..++ +|++|++++|++++..+..+.
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~---------~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~   72 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTV---------ELIQAFANTPASVTSLNLSGNSLGFKNSDELV   72 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHH---------HHHHHHHTCCTTCCEEECCSSCGGGSCHHHHH
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHH---------HHHHHHHhCCCceeEEECcCCCCCHHHHHHHH
Confidence            457778888877777766666788888766665433100         0003445566 788888888888777666665


Q ss_pred             CC-----CCCCeEecccCcCCccCccc----ccCC-CCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCccc
Q 036117          411 NL-----TNLFDLQLANNFFNGSIPST----IGNL-SSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFS  480 (641)
Q Consensus       411 ~l-----~~L~~L~l~~n~l~~~~~~~----l~~l-~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~  480 (641)
                      .+     ++|++|++++|.+++..+..    +..+ ++|++|++++|.+++..+..+...-. ..+.+|++|++++|.++
T Consensus        73 ~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~-~~~~~L~~L~Ls~N~l~  151 (362)
T 3goz_A           73 QILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFS-NLPASITSLNLRGNDLG  151 (362)
T ss_dssp             HHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHT-TSCTTCCEEECTTSCGG
T ss_pred             HHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHH-hCCCceeEEEccCCcCC
Confidence            53     78888888888877655443    3444 67888888888877655544432100 00116888888888777


Q ss_pred             ccCC----ccccCCC-CCceEeccCCcccCCCcccc----ccC-CCCcEEECCCCcCccc----cCcccCC-CCCCcEEe
Q 036117          481 GKLP----PGICRGG-NLIYLTANVNKLVGPIPESL----WNC-TGLTRVRLEQNRLDGD----ITNALGI-YPDLQYID  545 (641)
Q Consensus       481 ~~~~----~~~~~~~-~L~~L~l~~n~~~~~~~~~l----~~~-~~L~~L~l~~n~l~~~----~~~~~~~-l~~L~~L~  545 (641)
                      +..+    ..+...+ .|+.|++++|++.+..+..+    ..+ ++|++|++++|.+.+.    ++..+.. .++|++|+
T Consensus       152 ~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~  231 (362)
T 3goz_A          152 IKSSDELIQILAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLN  231 (362)
T ss_dssp             GSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEE
T ss_pred             HHHHHHHHHHHhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEE
Confidence            5333    3334444 77888888887776555433    334 4777788877777652    3333433 35777777


Q ss_pred             CCCCcccccCCh----hhhcCCCCCEEeCcCCcCccc-------CCccccCCCCCCEEeCCCCcCcccCC
Q 036117          546 LGDNQLSGVLTS----NWGKCTNLSNFRISGNRIKGG-------IPAELGNLTYLQNLDIFDNQLTGKIP  604 (641)
Q Consensus       546 Ls~n~~~~~~~~----~~~~l~~L~~L~L~~n~l~~~-------~p~~l~~l~~L~~L~L~~n~l~~~ip  604 (641)
                      +++|++++..+.    .+..+++|++|++++|.+.+.       ++..+..+++|++||+++|++.+..|
T Consensus       232 Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~  301 (362)
T 3goz_A          232 LCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS  301 (362)
T ss_dssp             CCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred             CcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence            777777765442    234557777777777774332       22345667777777777777765533

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.89  E-value=2.7e-24  Score=222.13  Aligned_cols=251  Identities=19%  Similarity=0.229  Sum_probs=133.3

Q ss_pred             cCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCC---cCcCCchhhh-------hCC
Q 036117          343 SLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDN---KFSGPIPQQI-------GNL  412 (641)
Q Consensus       343 ~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n---~l~~~~~~~~-------~~l  412 (641)
                      .++..+..+++|+.|++++|.+.....         ..++..+..+++|++|++++|   ++.+.+|..+       ..+
T Consensus        23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~---------~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~   93 (386)
T 2ca6_A           23 SVFAVLLEDDSVKEIVLSGNTIGTEAA---------RWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKC   93 (386)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHH---------HHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTC
T ss_pred             HHHHHHhcCCCccEEECCCCCCCHHHH---------HHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhC
Confidence            345555666666666655554432100         012233455666666666664   3333334333       455


Q ss_pred             CCCCeEecccCcCCc----cCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCcccc
Q 036117          413 TNLFDLQLANNFFNG----SIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGIC  488 (641)
Q Consensus       413 ~~L~~L~l~~n~l~~----~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~  488 (641)
                      ++|++|++++|.+.+    .++..+..+++|++|++++|.+++..+..+..                          .+.
T Consensus        94 ~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~--------------------------~l~  147 (386)
T 2ca6_A           94 PKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIAR--------------------------ALQ  147 (386)
T ss_dssp             TTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHH--------------------------HHH
T ss_pred             CcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHH--------------------------HHH
Confidence            666666666666654    24445555666666666666554332222221                          111


Q ss_pred             CC---------CCCceEeccCCccc-CCCc---cccccCCCCcEEECCCCcCcc-----ccCcccCCCCCCcEEeCCCCc
Q 036117          489 RG---------GNLIYLTANVNKLV-GPIP---ESLWNCTGLTRVRLEQNRLDG-----DITNALGIYPDLQYIDLGDNQ  550 (641)
Q Consensus       489 ~~---------~~L~~L~l~~n~~~-~~~~---~~l~~~~~L~~L~l~~n~l~~-----~~~~~~~~l~~L~~L~Ls~n~  550 (641)
                      .+         +.|+.|++++|++. +.++   ..+..+++|++|++++|++..     ..+..+..+++|+.|+|++|.
T Consensus       148 ~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~  227 (386)
T 2ca6_A          148 ELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNT  227 (386)
T ss_dssp             HHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSC
T ss_pred             HHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCC
Confidence            11         45555555555554 2222   234455666666666666552     222255556666666666666


Q ss_pred             cc----ccCChhhhcCCCCCEEeCcCCcCccc----CCcccc--CCCCCCEEeCCCCcCcc----cCCccc-cCCCCCCE
Q 036117          551 LS----GVLTSNWGKCTNLSNFRISGNRIKGG----IPAELG--NLTYLQNLDIFDNQLTG----KIPAQL-FRSSFLIR  615 (641)
Q Consensus       551 ~~----~~~~~~~~~l~~L~~L~L~~n~l~~~----~p~~l~--~l~~L~~L~L~~n~l~~----~ip~~l-~~~~~L~~  615 (641)
                      ++    ..+|..+..+++|++|+|++|.+++.    +|..+.  .+++|++|+|++|.+++    .+|..+ ..+++|+.
T Consensus       228 l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~  307 (386)
T 2ca6_A          228 FTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLF  307 (386)
T ss_dssp             CHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCE
T ss_pred             CCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceE
Confidence            64    34555566666666666666666544    344442  26666666666666665    356555 34566666


Q ss_pred             EeCcCCCCcccCc
Q 036117          616 LNLRRNQLSDKIP  628 (641)
Q Consensus       616 l~l~~n~l~~~~p  628 (641)
                      |++++|++++..|
T Consensus       308 L~l~~N~l~~~~~  320 (386)
T 2ca6_A          308 LELNGNRFSEEDD  320 (386)
T ss_dssp             EECTTSBSCTTSH
T ss_pred             EEccCCcCCcchh
Confidence            6666666665553

>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A

Probab=99.88  E-value=1.3e-21  Score=192.65  Aligned_cols=205  Identities=22%  Similarity=0.178  Sum_probs=174.8

Q ss_pred             hhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCC
Q 036117          347 SLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFN  426 (641)
Q Consensus       347 ~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~  426 (641)
                      .+..++++++++++++.++.              +|..+  .++++.|++++|.+++..+..|..+++|+.|++++|.++
T Consensus         5 ~~~~l~~l~~l~~~~~~l~~--------------ip~~~--~~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~   68 (290)
T 1p9a_G            5 EVSKVASHLEVNCDKRNLTA--------------LPPDL--PKDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT   68 (290)
T ss_dssp             EEECSTTCCEEECTTSCCSS--------------CCSCC--CTTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC
T ss_pred             cccccCCccEEECCCCCCCc--------------CCCCC--CCCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccC
Confidence            46677888888877776654              34433  268999999999999888889999999999999999998


Q ss_pred             ccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccccCCCCCceEeccCCcccCC
Q 036117          427 GSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGP  506 (641)
Q Consensus       427 ~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~  506 (641)
                      +. +. ...+++|++|++++|.+. .+|..+..+.      +|++|++++|++++..+..+..+++|+.|++++|++.+.
T Consensus        69 ~~-~~-~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~------~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~  139 (290)
T 1p9a_G           69 KL-QV-DGTLPVLGTLDLSHNQLQ-SLPLLGQTLP------ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTL  139 (290)
T ss_dssp             EE-EC-CSCCTTCCEEECCSSCCS-SCCCCTTTCT------TCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCC
T ss_pred             cc-cC-CCCCCcCCEEECCCCcCC-cCchhhccCC------CCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCcc
Confidence            54 33 278899999999999997 6777776666      899999999999976667899999999999999999977


Q ss_pred             CccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcc
Q 036117          507 IPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKG  577 (641)
Q Consensus       507 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~  577 (641)
                      .+..|..+++|+.|++++|++.+..+..+..+++|+.|++++|+++ .+|..+...++|+.+++++|++..
T Consensus       140 ~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C  209 (290)
T 1p9a_G          140 PPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (290)
T ss_dssp             CTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             ChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence            7777889999999999999999777777888999999999999999 667778888899999999999864

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.88  E-value=4.5e-22  Score=198.71  Aligned_cols=226  Identities=15%  Similarity=0.129  Sum_probs=177.1

Q ss_pred             CCCCEEEccCCcCcCCchh---hhhCCCCCCeEecccCcCCccCcccc--cCCCCCCEEEccCCcCcccCC----cchhc
Q 036117          389 PKLEYLYLFDNKFSGPIPQ---QIGNLTNLFDLQLANNFFNGSIPSTI--GNLSSLVKLSLSSNQLTGTLP----PEIGN  459 (641)
Q Consensus       389 ~~L~~L~L~~n~l~~~~~~---~~~~l~~L~~L~l~~n~l~~~~~~~l--~~l~~L~~L~ls~n~l~~~~~----~~~~~  459 (641)
                      ..++.+.+.++.++.....   .+..+++|++|++++|.+.+..|..+  ..+++|++|++++|.+.+..+    ..+..
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            4578888888877533111   12245679999999999988888777  889999999999999886555    22233


Q ss_pred             CCCCCCCCCccEEEccCCcccccCCccccCCCCCceEeccCCcccCC--C--ccccccCCCCcEEECCCCcCcccc--Cc
Q 036117          460 SKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGP--I--PESLWNCTGLTRVRLEQNRLDGDI--TN  533 (641)
Q Consensus       460 ~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~--~--~~~l~~~~~L~~L~l~~n~l~~~~--~~  533 (641)
                      ++      +|++|++++|.+++..+..+..+++|++|++++|++.+.  +  +..+..+++|++|++++|+++...  +.
T Consensus       144 ~~------~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~  217 (310)
T 4glp_A          144 KP------GLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMETPTGVCA  217 (310)
T ss_dssp             CS------CCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCCHHHHHH
T ss_pred             cc------CCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCchHHHHH
Confidence            44      899999999999877778888999999999999987642  2  233467899999999999996322  12


Q ss_pred             -ccCCCCCCcEEeCCCCcccccCChhhhcC---CCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCccccC
Q 036117          534 -ALGIYPDLQYIDLGDNQLSGVLTSNWGKC---TNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFR  609 (641)
Q Consensus       534 -~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l---~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~  609 (641)
                       .++.+++|++||+++|++++..|..+..+   ++|++|++++|+++ .+|..+.  ++|++|+|++|++++ +|. +..
T Consensus       218 ~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~-~~~-~~~  292 (310)
T 4glp_A          218 ALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNR-APQ-PDE  292 (310)
T ss_dssp             HHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCS-CCC-TTS
T ss_pred             HHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCC-Cch-hhh
Confidence             34678999999999999998878777776   69999999999998 6777764  799999999999985 454 567


Q ss_pred             CCCCCEEeCcCCCCcc
Q 036117          610 SSFLIRLNLRRNQLSD  625 (641)
Q Consensus       610 ~~~L~~l~l~~n~l~~  625 (641)
                      +++|+.|++++|+++.
T Consensus       293 l~~L~~L~L~~N~l~~  308 (310)
T 4glp_A          293 LPEVDNLTLDGNPFLV  308 (310)
T ss_dssp             CCCCSCEECSSTTTSC
T ss_pred             CCCccEEECcCCCCCC
Confidence            8999999999999874

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.88  E-value=9.2e-24  Score=213.96  Aligned_cols=198  Identities=17%  Similarity=0.206  Sum_probs=118.1

Q ss_pred             CCCEEEccCccccccCchhhhcC--CCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCC-c
Q 036117          329 NLTFLELSINNLTGSLPLSLASL--RQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGP-I  405 (641)
Q Consensus       329 ~L~~L~l~~n~l~~~~~~~l~~~--~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~-~  405 (641)
                      .++.++++++.+.   +..+..+  +.++.+++++|.+             .+..+. +..+++|++|++++|.+++. +
T Consensus        48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l-------------~~~~~~-~~~~~~L~~L~L~~~~l~~~~~  110 (336)
T 2ast_B           48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFM-------------DQPLAE-HFSPFRVQHMDLSNSVIEVSTL  110 (336)
T ss_dssp             TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEE-------------CSCCCS-CCCCBCCCEEECTTCEECHHHH
T ss_pred             hheeeccccccCC---HHHHHhhhhccceEEEcCCccc-------------cccchh-hccCCCCCEEEccCCCcCHHHH
Confidence            4788888887776   4555555  6777777555543             333333 44678888888888887755 6


Q ss_pred             hhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCC-cCccc-CCcchhcCCCCCCCCCccEEEccCC-ccccc
Q 036117          406 PQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSN-QLTGT-LPPEIGNSKSDFGPRFLRNVSFSYN-NFSGK  482 (641)
Q Consensus       406 ~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n-~l~~~-~~~~~~~~~~~~~~~~L~~L~ls~n-~l~~~  482 (641)
                      +..+..+++|++|++++|.+.+..+..+..+++|++|++++| .+++. ++..+..++      +|++|++++| .+++.
T Consensus       111 ~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~------~L~~L~l~~~~~l~~~  184 (336)
T 2ast_B          111 HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS------RLDELNLSWCFDFTEK  184 (336)
T ss_dssp             HHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT------TCCEEECCCCTTCCHH
T ss_pred             HHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCC------CCCEEcCCCCCCcChH
Confidence            667777888888888888877667777777788888888877 45542 444444454      5666666666 55542


Q ss_pred             -CCccccCCC-CCceEeccCCc--cc-CCCccccccCCCCcEEECCCCc-CccccCcccCCCCCCcEEeCCCC
Q 036117          483 -LPPGICRGG-NLIYLTANVNK--LV-GPIPESLWNCTGLTRVRLEQNR-LDGDITNALGIYPDLQYIDLGDN  549 (641)
Q Consensus       483 -~~~~~~~~~-~L~~L~l~~n~--~~-~~~~~~l~~~~~L~~L~l~~n~-l~~~~~~~~~~l~~L~~L~Ls~n  549 (641)
                       ++..+..++ +|+.|++++|.  +. +.+|..+.++++|++|++++|. +++..+..++.+++|++|++++|
T Consensus       185 ~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~  257 (336)
T 2ast_B          185 HVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRC  257 (336)
T ss_dssp             HHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTC
T ss_pred             HHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCC
Confidence             344444455 55555555552  22 2233334444444444444444 33333334444444444444444

>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}

Probab=99.88  E-value=1.5e-23  Score=214.22  Aligned_cols=260  Identities=18%  Similarity=0.127  Sum_probs=174.3

Q ss_pred             eeeccCccCCCCCCcCCCCCCCCCEEEccCccccccCc----hhhhcCC-CCCeEeCCcccccccceeecccccccccCC
Q 036117          308 RLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLP----LSLASLR-QISELGISNNQLSEIISLQLQMNDLSGKLP  382 (641)
Q Consensus       308 ~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~----~~l~~~~-~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~  382 (641)
                      .++++.+.+.+.+|..+...++|++|++++|.+++..+    ..+..++ +|++|++++|.++..             .+
T Consensus         2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~-------------~~   68 (362)
T 3goz_A            2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFK-------------NS   68 (362)
T ss_dssp             EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGS-------------CH
T ss_pred             ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHH-------------HH
Confidence            35677777877777766666678888888888887666    6667777 788888766665432             22


Q ss_pred             cCCCC-----CCCCCEEEccCCcCcCCchhhh----hCC-CCCCeEecccCcCCccCccc----ccC-CCCCCEEEccCC
Q 036117          383 PEIGL-----LPKLEYLYLFDNKFSGPIPQQI----GNL-TNLFDLQLANNFFNGSIPST----IGN-LSSLVKLSLSSN  447 (641)
Q Consensus       383 ~~l~~-----~~~L~~L~L~~n~l~~~~~~~~----~~l-~~L~~L~l~~n~l~~~~~~~----l~~-l~~L~~L~ls~n  447 (641)
                      ..+..     +++|++|++++|++++..+..+    ..+ ++|++|++++|.+++..+..    +.. .++|++|++++|
T Consensus        69 ~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N  148 (362)
T 3goz_A           69 DELVQILAAIPANVTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGN  148 (362)
T ss_dssp             HHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTS
T ss_pred             HHHHHHHhccCCCccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCC
Confidence            22332     2788888888888887666544    334 78888888888887654433    333 358888888888


Q ss_pred             cCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCcccc----CC-CCCceEeccCCcccCC----Ccccccc-CCCC
Q 036117          448 QLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGIC----RG-GNLIYLTANVNKLVGP----IPESLWN-CTGL  517 (641)
Q Consensus       448 ~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~----~~-~~L~~L~l~~n~~~~~----~~~~l~~-~~~L  517 (641)
                      .+++..+..+...- ...+++|++|++++|++++..+..+.    .+ ++|+.|++++|.+.+.    ++..+.. .++|
T Consensus       149 ~l~~~~~~~l~~~l-~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L  227 (362)
T 3goz_A          149 DLGIKSSDELIQIL-AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHV  227 (362)
T ss_dssp             CGGGSCHHHHHHHH-HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTC
T ss_pred             cCCHHHHHHHHHHH-hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCc
Confidence            88754443332110 00012688888888888766554333    34 5888888888888753    3444544 4588


Q ss_pred             cEEECCCCcCccccC----cccCCCCCCcEEeCCCCcccccCC-------hhhhcCCCCCEEeCcCCcCcccCCc
Q 036117          518 TRVRLEQNRLDGDIT----NALGIYPDLQYIDLGDNQLSGVLT-------SNWGKCTNLSNFRISGNRIKGGIPA  581 (641)
Q Consensus       518 ~~L~l~~n~l~~~~~----~~~~~l~~L~~L~Ls~n~~~~~~~-------~~~~~l~~L~~L~L~~n~l~~~~p~  581 (641)
                      ++|++++|.+.+..+    ..+..+++|++|++++|.+.+..+       ..+..+++|++|++++|++.+..+.
T Consensus       228 ~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~~  302 (362)
T 3goz_A          228 VSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHSI  302 (362)
T ss_dssp             CEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGCH
T ss_pred             eEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcchH
Confidence            888888888876433    345677888888888888543322       3456677888888888888765443

>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A

Probab=99.88  E-value=4.5e-23  Score=208.90  Aligned_cols=234  Identities=18%  Similarity=0.204  Sum_probs=152.5

Q ss_pred             CCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCcc-CcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCC
Q 036117          389 PKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGS-IPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPR  467 (641)
Q Consensus       389 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~  467 (641)
                      +.++.+++++|.+.+..+. +..+++|++|++++|.+.+. ++..+..+++|++|++++|.+++..+..+..++      
T Consensus        70 ~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~------  142 (336)
T 2ast_B           70 QGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNS------  142 (336)
T ss_dssp             TTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCT------
T ss_pred             ccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCC------
Confidence            5677777777777665554 44567777777777776654 566677777777777777777666666666655      


Q ss_pred             CccEEEccCC-ccccc-CCccccCCCCCceEeccCC-cccCC-CccccccCC-CCcEEECCCC--cCc-cccCcccCCCC
Q 036117          468 FLRNVSFSYN-NFSGK-LPPGICRGGNLIYLTANVN-KLVGP-IPESLWNCT-GLTRVRLEQN--RLD-GDITNALGIYP  539 (641)
Q Consensus       468 ~L~~L~ls~n-~l~~~-~~~~~~~~~~L~~L~l~~n-~~~~~-~~~~l~~~~-~L~~L~l~~n--~l~-~~~~~~~~~l~  539 (641)
                      +|++|++++| .+++. ++..+..+++|+.|++++| .+.+. ++..+..++ +|++|++++|  .++ +.++..+..++
T Consensus       143 ~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~~~~~~l~~~~~~~~  222 (336)
T 2ast_B          143 NLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCP  222 (336)
T ss_dssp             TCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCT
T ss_pred             CCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCcccCCHHHHHHHHhhCC
Confidence            6777777777 46542 5555666777777777777 66543 455566677 7777777777  344 34455556677


Q ss_pred             CCcEEeCCCCc-ccccCChhhhcCCCCCEEeCcCCc-CcccCCccccCCCCCCEEeCCCCcCcccCCccccCC-CCCCEE
Q 036117          540 DLQYIDLGDNQ-LSGVLTSNWGKCTNLSNFRISGNR-IKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRS-SFLIRL  616 (641)
Q Consensus       540 ~L~~L~Ls~n~-~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~-~~L~~l  616 (641)
                      +|++|++++|. +++..+..+..+++|++|++++|. +.......++++++|++|++++| +..   ..+..+ ..++.|
T Consensus       223 ~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~-i~~---~~~~~l~~~l~~L  298 (336)
T 2ast_B          223 NLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI-VPD---GTLQLLKEALPHL  298 (336)
T ss_dssp             TCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-SCT---TCHHHHHHHSTTS
T ss_pred             CCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-cCH---HHHHHHHhhCcce
Confidence            77777777777 666666677777777777777774 22222224666777777777777 321   122333 336666


Q ss_pred             eCcCCCCcccCcccccC
Q 036117          617 NLRRNQLSDKIPAEIGK  633 (641)
Q Consensus       617 ~l~~n~l~~~~p~~~~~  633 (641)
                      ++++|++++..|..++.
T Consensus       299 ~l~~n~l~~~~~~~~~~  315 (336)
T 2ast_B          299 QINCSHFTTIARPTIGN  315 (336)
T ss_dssp             EESCCCSCCTTCSSCSS
T ss_pred             EEecccCccccCCcccc
Confidence            67777777777766554

>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A

Probab=99.87  E-value=1.5e-23  Score=216.53  Aligned_cols=242  Identities=21%  Similarity=0.235  Sum_probs=145.7

Q ss_pred             CCCcCCCCCCCCCEEEccCccccccCch----hhhcCCCCCeEeCCcccccccceeecccccccccCCcCC-------CC
Q 036117          319 SIPKELGFCANLTFLELSINNLTGSLPL----SLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEI-------GL  387 (641)
Q Consensus       319 ~~~~~l~~~~~L~~L~l~~n~l~~~~~~----~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l-------~~  387 (641)
                      .++..+..+++|++|++++|.+++..+.    .+..+++|++|++++|.+..+          .+.+|..+       ..
T Consensus        23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l----------~~~~~~~~~~l~~~l~~   92 (386)
T 2ca6_A           23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRV----------KDEIPEALRLLLQALLK   92 (386)
T ss_dssp             TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSC----------GGGSHHHHHHHHHHHTT
T ss_pred             HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCcc----------ccchhHHHHHHHHHHhh
Confidence            3555677889999999999999876444    466899999999888765433          34444444       67


Q ss_pred             CCCCCEEEccCCcCcC----CchhhhhCCCCCCeEecccCcCCccCccc----ccCC---------CCCCEEEccCCcCc
Q 036117          388 LPKLEYLYLFDNKFSG----PIPQQIGNLTNLFDLQLANNFFNGSIPST----IGNL---------SSLVKLSLSSNQLT  450 (641)
Q Consensus       388 ~~~L~~L~L~~n~l~~----~~~~~~~~l~~L~~L~l~~n~l~~~~~~~----l~~l---------~~L~~L~ls~n~l~  450 (641)
                      +++|++|++++|.+++    .++..+..+++|++|++++|.+.+..+..    +..+         ++|++|++++|.++
T Consensus        93 ~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~  172 (386)
T 2ca6_A           93 CPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLE  172 (386)
T ss_dssp             CTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCT
T ss_pred             CCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCC
Confidence            8999999999999997    47778899999999999999997543333    3333         78888888888776


Q ss_pred             -ccCC---cchhcCCCCCCCCCccEEEccCCccccc-----CCccccCCCCCceEeccCCccc----CCCccccccCCCC
Q 036117          451 -GTLP---PEIGNSKSDFGPRFLRNVSFSYNNFSGK-----LPPGICRGGNLIYLTANVNKLV----GPIPESLWNCTGL  517 (641)
Q Consensus       451 -~~~~---~~~~~~~~~~~~~~L~~L~ls~n~l~~~-----~~~~~~~~~~L~~L~l~~n~~~----~~~~~~l~~~~~L  517 (641)
                       +.++   ..+..++      +|++|++++|.++..     .+..+..+++|+.|++++|.+.    +.+|..+..+++|
T Consensus       173 ~~~~~~l~~~l~~~~------~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L  246 (386)
T 2ca6_A          173 NGSMKEWAKTFQSHR------LLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNL  246 (386)
T ss_dssp             GGGHHHHHHHHHHCT------TCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTC
T ss_pred             cHHHHHHHHHHHhCC------CcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCc
Confidence             2333   2333444      566666666665421     2223444444555555544443    2334444444444


Q ss_pred             cEEECCCCcCccc----cCccc--CCCCCCcEEeCCCCcccc----cCChhh-hcCCCCCEEeCcCCcCc
Q 036117          518 TRVRLEQNRLDGD----ITNAL--GIYPDLQYIDLGDNQLSG----VLTSNW-GKCTNLSNFRISGNRIK  576 (641)
Q Consensus       518 ~~L~l~~n~l~~~----~~~~~--~~l~~L~~L~Ls~n~~~~----~~~~~~-~~l~~L~~L~L~~n~l~  576 (641)
                      ++|++++|.+.+.    ++..+  +.+++|++|+|++|.+++    .+|..+ .++++|++|++++|+++
T Consensus       247 ~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~  316 (386)
T 2ca6_A          247 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  316 (386)
T ss_dssp             CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             CEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCC
Confidence            4444444444332    22222  124444444444444443    233333 23344444444444444

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.87  E-value=1.9e-21  Score=187.79  Aligned_cols=189  Identities=25%  Similarity=0.319  Sum_probs=125.0

Q ss_pred             CCccccceeeCCCCCEEEEEcCCCCCccccCCcCCCCCCCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCc
Q 036117           50 GPCNWNGIQCNEVGSISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIP  129 (641)
Q Consensus        50 ~~c~~~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p  129 (641)
                      +||.|.|+.|..  ..++++++++.+. .+| ..+.  +++++|++++|.+.+..+..+..+++|++|++++|.+++..|
T Consensus         3 ~Cp~~~gC~C~~--~~~~l~~~~~~l~-~~p-~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~   76 (251)
T 3m19_A            3 TCETVTGCTCNE--GKKEVDCQGKSLD-SVP-SGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSA   76 (251)
T ss_dssp             -CHHHHSSEEEG--GGTEEECTTCCCS-SCC-SCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCT
T ss_pred             cCCCCCceEcCC--CCeEEecCCCCcc-ccC-CCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCH
Confidence            578999999952  3456788888776 344 2332  578888888888887777778888888888888888887777


Q ss_pred             cccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEeccccCCCCCCcccCCCCCCCEEEcCCCCCCCCch-hhcCCCC
Q 036117          130 PEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPS-FIAECSK  208 (641)
Q Consensus       130 ~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~-~l~~~~~  208 (641)
                      ..+..+++|++|++++|.+++..+..|..+++|++|++++|.+++..+..|..+++|++|++++|.+..++. .+..+++
T Consensus        77 ~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~  156 (251)
T 3m19_A           77 GVFDDLTELGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTN  156 (251)
T ss_dssp             TTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred             hHhccCCcCCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcC
Confidence            677778888888888888776666667777777777777777776666666666666666666666655544 3445555


Q ss_pred             CcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCccc
Q 036117          209 LMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFE  245 (641)
Q Consensus       209 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~  245 (641)
                      |++|++++|.+. .++...+..+++|++|++++|.+.
T Consensus       157 L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~  192 (251)
T 3m19_A          157 LQTLSLSTNQLQ-SVPHGAFDRLGKLQTITLFGNQFD  192 (251)
T ss_dssp             CCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSCCBC
T ss_pred             CCEEECCCCcCC-ccCHHHHhCCCCCCEEEeeCCcee
Confidence            555555555544 223233344444444444444443

>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A

Probab=99.86  E-value=7e-21  Score=183.78  Aligned_cols=181  Identities=21%  Similarity=0.214  Sum_probs=150.4

Q ss_pred             CCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccccCCCC
Q 036117          413 TNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGN  492 (641)
Q Consensus       413 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~  492 (641)
                      ...+.++++++.+. .+|..+.  +.+++|++++|.+.+..+..+..+.      +|++|++++|.+++..+..+..+++
T Consensus        14 ~~~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~------~L~~L~L~~n~l~~~~~~~~~~l~~   84 (251)
T 3m19_A           14 EGKKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLT------KLTWLNLDYNQLQTLSAGVFDDLTE   84 (251)
T ss_dssp             GGGTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCT------TCCEEECTTSCCCCCCTTTTTTCTT
T ss_pred             CCCeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcc------cCCEEECCCCcCCccCHhHhccCCc
Confidence            45678899988887 5665543  6889999999998877777777776      8999999999888777777888889


Q ss_pred             CceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcC
Q 036117          493 LIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISG  572 (641)
Q Consensus       493 L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~  572 (641)
                      |+.|++++|++.+..+..+..+++|++|++++|++.+..+..++.+++|++|++++|++++..+..++.+++|++|++++
T Consensus        85 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~  164 (251)
T 3m19_A           85 LGTLGLANNQLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLST  164 (251)
T ss_dssp             CCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEECCCCcccccChhHhcccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCC
Confidence            99999999988877777788888899999999988877777778888999999999988877777788888899999999


Q ss_pred             CcCcccCCccccCCCCCCEEeCCCCcCccc
Q 036117          573 NRIKGGIPAELGNLTYLQNLDIFDNQLTGK  602 (641)
Q Consensus       573 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  602 (641)
                      |++++..+..+..+++|+.|++++|++.+.
T Consensus       165 N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~  194 (251)
T 3m19_A          165 NQLQSVPHGAFDRLGKLQTITLFGNQFDCS  194 (251)
T ss_dssp             SCCSCCCTTTTTTCTTCCEEECCSCCBCTT
T ss_pred             CcCCccCHHHHhCCCCCCEEEeeCCceeCC
Confidence            988877777888888899999999988765

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=1.9e-21  Score=186.34  Aligned_cols=197  Identities=17%  Similarity=0.167  Sum_probs=114.0

Q ss_pred             CCCEEEccCCcCcCCchhhhhCCCCCCeEecccCc-CCccCcccccCCCCCCEEEccC-CcCcccCCcchhcCCCCCCCC
Q 036117          390 KLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNF-FNGSIPSTIGNLSSLVKLSLSS-NQLTGTLPPEIGNSKSDFGPR  467 (641)
Q Consensus       390 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~-l~~~~~~~l~~l~~L~~L~ls~-n~l~~~~~~~~~~~~~~~~~~  467 (641)
                      ++++|++++|++++..+..|..+++|++|++++|. +++..+..|..+++|++|++++ |.+++..+             
T Consensus        32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~-------------   98 (239)
T 2xwt_C           32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDP-------------   98 (239)
T ss_dssp             TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECT-------------
T ss_pred             cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCH-------------
Confidence            55666666666655444455555666666666654 5433334455555555555555 55543333             


Q ss_pred             CccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCc---EEECCCC-cCccccCcccCCCCCCc-
Q 036117          468 FLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLT---RVRLEQN-RLDGDITNALGIYPDLQ-  542 (641)
Q Consensus       468 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~---~L~l~~n-~l~~~~~~~~~~l~~L~-  542 (641)
                                       ..+..+++|+.|++++|++.+ +|. +..+++|+   +|++++| .+.+..+..|..+++|+ 
T Consensus        99 -----------------~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~  159 (239)
T 2xwt_C           99 -----------------DALKELPLLKFLGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETL  159 (239)
T ss_dssp             -----------------TSEECCTTCCEEEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEE
T ss_pred             -----------------HHhCCCCCCCEEeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhccee
Confidence                             334444555555555555443 333 45555555   6666666 66655555566677777 


Q ss_pred             EEeCCCCcccccCChhhhcCCCCCEEeCcCCc-CcccCCccccCC-CCCCEEeCCCCcCcccCCccccCCCCCCEEeCcC
Q 036117          543 YIDLGDNQLSGVLTSNWGKCTNLSNFRISGNR-IKGGIPAELGNL-TYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRR  620 (641)
Q Consensus       543 ~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~-l~~~~p~~l~~l-~~L~~L~L~~n~l~~~ip~~l~~~~~L~~l~l~~  620 (641)
                      .|++++|+++...+..+.. ++|++|++++|+ +++..+..|..+ ++|++|++++|+++ .+|..  .++.|+.|++++
T Consensus       160 ~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~-~l~~~--~~~~L~~L~l~~  235 (239)
T 2xwt_C          160 TLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVT-ALPSK--GLEHLKELIARN  235 (239)
T ss_dssp             EEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCC-CCCCT--TCTTCSEEECTT
T ss_pred             EEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCccc-cCChh--HhccCceeeccC
Confidence            7777777766333333333 667777777774 665555666777 77777777777776 45544  456677777766


Q ss_pred             CC
Q 036117          621 NQ  622 (641)
Q Consensus       621 n~  622 (641)
                      +.
T Consensus       236 ~~  237 (239)
T 2xwt_C          236 TW  237 (239)
T ss_dssp             C-
T ss_pred             cc
Confidence            53

>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*

Probab=99.86  E-value=6.1e-21  Score=182.85  Aligned_cols=203  Identities=16%  Similarity=0.189  Sum_probs=140.4

Q ss_pred             cCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCc-CcCCchhhhhCCCCCCeEecc
Q 036117          343 SLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNK-FSGPIPQQIGNLTNLFDLQLA  421 (641)
Q Consensus       343 ~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~  421 (641)
                      .+|. +  .+++++|++++|+++             +..+..+..+++|++|++++|+ +++..+..|..+++|++|+++
T Consensus        25 ~ip~-~--~~~l~~L~l~~n~l~-------------~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~   88 (239)
T 2xwt_C           25 RIPS-L--PPSTQTLKLIETHLR-------------TIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIR   88 (239)
T ss_dssp             SCCC-C--CTTCCEEEEESCCCS-------------EECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEE
T ss_pred             ccCC-C--CCcccEEEEeCCcce-------------EECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECC
Confidence            5665 3  237777776555544             4445578889999999999997 887777789999999999999


Q ss_pred             c-CcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCcc---EEEccCC-cccccCCccccCCCCCceE
Q 036117          422 N-NFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLR---NVSFSYN-NFSGKLPPGICRGGNLIYL  496 (641)
Q Consensus       422 ~-n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~---~L~ls~n-~l~~~~~~~~~~~~~L~~L  496 (641)
                      + |.+++..+..|..+++|++|++++|.+++ +|. +..+.      +|+   +|++++| .++                
T Consensus        89 ~~n~l~~i~~~~f~~l~~L~~L~l~~n~l~~-lp~-~~~l~------~L~~L~~L~l~~N~~l~----------------  144 (239)
T 2xwt_C           89 NTRNLTYIDPDALKELPLLKFLGIFNTGLKM-FPD-LTKVY------STDIFFILEITDNPYMT----------------  144 (239)
T ss_dssp             EETTCCEECTTSEECCTTCCEEEEEEECCCS-CCC-CTTCC------BCCSEEEEEEESCTTCC----------------
T ss_pred             CCCCeeEcCHHHhCCCCCCCEEeCCCCCCcc-ccc-ccccc------ccccccEEECCCCcchh----------------
Confidence            9 99997666789999999999999999874 554 44433      444   5555555 444                


Q ss_pred             eccCCcccCCCccccccCCCCc-EEECCCCcCccccCcccCCCCCCcEEeCCCCc-ccccCChhhhcC-CCCCEEeCcCC
Q 036117          497 TANVNKLVGPIPESLWNCTGLT-RVRLEQNRLDGDITNALGIYPDLQYIDLGDNQ-LSGVLTSNWGKC-TNLSNFRISGN  573 (641)
Q Consensus       497 ~l~~n~~~~~~~~~l~~~~~L~-~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-~~~~~~~~~~~l-~~L~~L~L~~n  573 (641)
                              +..+..|.++++|+ +|++++|++....+..+.. ++|+.|++++|+ +++..+..+..+ ++|++|++++|
T Consensus       145 --------~i~~~~~~~l~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N  215 (239)
T 2xwt_C          145 --------SIPVNAFQGLCNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQT  215 (239)
T ss_dssp             --------EECTTTTTTTBSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTC
T ss_pred             --------hcCcccccchhcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCC
Confidence                    33334455566666 6666666666333333333 677777777774 766666667777 77777777777


Q ss_pred             cCcccCCccccCCCCCCEEeCCCC
Q 036117          574 RIKGGIPAELGNLTYLQNLDIFDN  597 (641)
Q Consensus       574 ~l~~~~p~~l~~l~~L~~L~L~~n  597 (641)
                      +++ .+|..  .+++|+.|+++++
T Consensus       216 ~l~-~l~~~--~~~~L~~L~l~~~  236 (239)
T 2xwt_C          216 SVT-ALPSK--GLEHLKELIARNT  236 (239)
T ss_dssp             CCC-CCCCT--TCTTCSEEECTTC
T ss_pred             ccc-cCChh--HhccCceeeccCc
Confidence            776 34433  5667777777765

>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}

Probab=99.85  E-value=2.2e-21  Score=193.64  Aligned_cols=223  Identities=17%  Similarity=0.136  Sum_probs=136.5

Q ss_pred             CCCCEEECCCCCCCccCch---hccCCCCCCEEECCCCcCCCCCcccc--CCCCCCCEEEcccccCCCCCC----hhccC
Q 036117           88 PNLTALNLNMNNLVGSIPA---GIGNATKLILLDLSSNNLTNPIPPEI--GYLSDLRVLLLYNNSLTGQIP----HQLSN  158 (641)
Q Consensus        88 ~~L~~L~L~~n~~~~~~~~---~l~~l~~L~~L~L~~n~l~~~~p~~l--~~l~~L~~L~l~~n~~~~~~~----~~l~~  158 (641)
                      ..++.+.+.++.+......   .+..+++|++|++++|.+.+..|..+  ..+++|++|++++|.+++..+    ..+..
T Consensus        64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~  143 (310)
T 4glp_A           64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL  143 (310)
T ss_dssp             CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred             cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence            3567788887776532111   12234668888888888888888777  788888888888888886544    34457


Q ss_pred             CCCCcEEEeccccCCCCCCcccCCCCCCCEEEcCCCCCCC---Cch--hhcCCCCCcEEEeeCCcCCCCCCh---hhhcC
Q 036117          159 LQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEK---FPS--FIAECSKLMFLDLSDNLIMGHIPI---EQLTH  230 (641)
Q Consensus       159 l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~---l~~--~l~~~~~L~~L~l~~~~~~~~~~~---~~l~~  230 (641)
                      +++|++|++++|.+.+..+..+..+++|++|++++|.+..   ++.  .+..+++|++|++++|.++ .++.   ..+..
T Consensus       144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~~  222 (310)
T 4glp_A          144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAALAAA  222 (310)
T ss_dssp             CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHHHHHH
T ss_pred             ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHHHHhc
Confidence            8888888888888887777777788888888888877532   221  2345666666666666664 2221   12345


Q ss_pred             CCCCcEEeccCCcccccCCcccCCC---CCCCEEEcCCCcCCccCCcccCCCCcccEeeeecccccccCccccCCCCCCC
Q 036117          231 LENLEYLNLTKNSFEGEIPREIKTF---PKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQ  307 (641)
Q Consensus       231 l~~L~~L~l~~n~~~~~~~~~l~~l---~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~  307 (641)
                      +++|++|++++|.+++..|..+..+   ++|++|++++|.++ .+|..+.  ++|++|++++|++++. | .+..+++|+
T Consensus       223 l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~Ls~N~l~~~-~-~~~~l~~L~  297 (310)
T 4glp_A          223 GVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLDLSSNRLNRA-P-QPDELPEVD  297 (310)
T ss_dssp             TCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEECCSCCCCSC-C-CTTSCCCCS
T ss_pred             CCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEECCCCcCCCC-c-hhhhCCCcc
Confidence            5666666666666665545554444   45666666666555 3444332  4555555555554432 1 123334444


Q ss_pred             eeeccCccC
Q 036117          308 RLNLKSAGL  316 (641)
Q Consensus       308 ~L~l~~~~~  316 (641)
                      .|++++|.+
T Consensus       298 ~L~L~~N~l  306 (310)
T 4glp_A          298 NLTLDGNPF  306 (310)
T ss_dssp             CEECSSTTT
T ss_pred             EEECcCCCC
Confidence            444444443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=1.1e-20  Score=187.96  Aligned_cols=172  Identities=27%  Similarity=0.398  Sum_probs=82.2

Q ss_pred             CCCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCC
Q 036117          385 IGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDF  464 (641)
Q Consensus       385 l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~  464 (641)
                      +..+++|++|++++|.+++..+  +..+++|++|++++|.+.+ ++ .+..+++|++|++++|.+++ ++. +..++   
T Consensus        59 ~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~-~~-~~~~l~~L~~L~l~~n~l~~-~~~-l~~l~---  129 (308)
T 1h6u_A           59 VQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-VS-AIAGLQSIKTLDLTSTQITD-VTP-LAGLS---  129 (308)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-CG-GGTTCTTCCEEECTTSCCCC-CGG-GTTCT---
T ss_pred             hhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCC-ch-hhcCCCCCCEEECCCCCCCC-chh-hcCCC---
Confidence            4445566666666666654333  5556666666666666553 22 35555566666666665543 221 33333   


Q ss_pred             CCCCccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEE
Q 036117          465 GPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYI  544 (641)
Q Consensus       465 ~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  544 (641)
                         +|++|++++|.+++. +. +..+++|+.|++++|++.+..+  +..+++|+.|++++|++.+..+  +..+++|++|
T Consensus       130 ---~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L  200 (308)
T 1h6u_A          130 ---NLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSDLTP--LANLSKLTTLKADDNKISDISP--LASLPNLIEV  200 (308)
T ss_dssp             ---TCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEE
T ss_pred             ---CCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCCCChh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEE
Confidence               455555555555422 11 4444444445444444442211  4444444444444444443222  3444444444


Q ss_pred             eCCCCcccccCChhhhcCCCCCEEeCcCCcCc
Q 036117          545 DLGDNQLSGVLTSNWGKCTNLSNFRISGNRIK  576 (641)
Q Consensus       545 ~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~  576 (641)
                      ++++|++++..+  +..+++|++|++++|+++
T Consensus       201 ~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~  230 (308)
T 1h6u_A          201 HLKNNQISDVSP--LANTSNLFIVTLTNQTIT  230 (308)
T ss_dssp             ECTTSCCCBCGG--GTTCTTCCEEEEEEEEEE
T ss_pred             EccCCccCcccc--ccCCCCCCEEEccCCeee
Confidence            444444443321  344444444444444443

>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1

Probab=99.85  E-value=3.5e-20  Score=184.39  Aligned_cols=195  Identities=22%  Similarity=0.365  Sum_probs=130.6

Q ss_pred             CCCCCCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCc
Q 036117           84 FSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAW  163 (641)
Q Consensus        84 ~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~  163 (641)
                      +..+++|++|++++|.+.. ++ .+..+++|++|++++|.+++. +. +..+++|++|++++|.+++.  ..+..+++|+
T Consensus        37 ~~~l~~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~-~~-~~~l~~L~~L~L~~n~l~~~--~~~~~l~~L~  110 (308)
T 1h6u_A           37 QADLDGITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDL-AP-LKNLTKITELELSGNPLKNV--SAIAGLQSIK  110 (308)
T ss_dssp             HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCC-GG-GTTCCSCCEEECCSCCCSCC--GGGTTCTTCC
T ss_pred             HHHcCCcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCC-hh-HccCCCCCEEEccCCcCCCc--hhhcCCCCCC
Confidence            3356677777777777663 33 466777777777777777743 33 77777777777777777643  3566777777


Q ss_pred             EEEeccccCCCCCCcccCCCCCCCEEEcCCCCCCCCchhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCc
Q 036117          164 LLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNS  243 (641)
Q Consensus       164 ~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~  243 (641)
                      +|++++|.+.+..  .+..+++|++|++++|.+..++. +..+++|++|++++|.+.+ ++.  +..+++|++|++++|.
T Consensus       111 ~L~l~~n~l~~~~--~l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-~~~--l~~l~~L~~L~l~~n~  184 (308)
T 1h6u_A          111 TLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNISP-LAGLTNLQYLSIGNAQVSD-LTP--LANLSKLTTLKADDNK  184 (308)
T ss_dssp             EEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCGG-GGGCTTCCEEECCSSCCCC-CGG--GTTCTTCCEEECCSSC
T ss_pred             EEECCCCCCCCch--hhcCCCCCCEEECCCCccCcCcc-ccCCCCccEEEccCCcCCC-Chh--hcCCCCCCEEECCCCc
Confidence            7777777776643  26677777777777777766655 6677777777777777663 332  4667777777777777


Q ss_pred             ccccCCcccCCCCCCCEEEcCCCcCCccCCcccCCCCcccEeeeecccccc
Q 036117          244 FEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHG  294 (641)
Q Consensus       244 ~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~  294 (641)
                      +++..+  +..+++|++|++++|.+.+..  .+..+++|++|++++|.+++
T Consensus       185 l~~~~~--l~~l~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~  231 (308)
T 1h6u_A          185 ISDISP--LASLPNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN  231 (308)
T ss_dssp             CCCCGG--GGGCTTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred             cCcChh--hcCCCCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence            764322  666777777777777776443  26667777777777777654

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.84  E-value=4.8e-20  Score=172.49  Aligned_cols=184  Identities=22%  Similarity=0.222  Sum_probs=146.6

Q ss_pred             CccccceeeCCCCCEEEEEcCCCCCccccCCcCCCCCCCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCcc
Q 036117           51 PCNWNGIQCNEVGSISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPP  130 (641)
Q Consensus        51 ~c~~~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~  130 (641)
                      .|.|+++.|...+           +. .+|   ..-.++|++|++++|.+.+..+..+..+++|++|++++|.+++..+.
T Consensus         6 ~C~~~~v~c~~~~-----------l~-~~p---~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~   70 (208)
T 2o6s_A            6 SCSGTTVECYSQG-----------RT-SVP---TGIPAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNG   70 (208)
T ss_dssp             EEETTEEECCSSC-----------CS-SCC---SCCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTT
T ss_pred             EECCCEEEecCCC-----------cc-CCC---CCCCCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChh
Confidence            4789999997422           11 222   22246899999999999877777788999999999999999976666


Q ss_pred             ccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEeccccCCCCCCcccCCCCCCCEEEcCCCCCCCCchh-hcCCCCC
Q 036117          131 EIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSF-IAECSKL  209 (641)
Q Consensus       131 ~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~-l~~~~~L  209 (641)
                      .|..+++|++|++++|.+++..+..+.++++|++|++++|.+.+..+..|..+++|++|++++|.+..++.. +..+++|
T Consensus        71 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L  150 (208)
T 2o6s_A           71 VFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSL  150 (208)
T ss_dssp             TTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTC
T ss_pred             hcCCCCCcCEEECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCc
Confidence            678999999999999999877777788999999999999999888888888888999999998888777654 6778888


Q ss_pred             cEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCcccccCCcccCCCCC
Q 036117          210 MFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPK  257 (641)
Q Consensus       210 ~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~  257 (641)
                      ++|++++|.+.        ..++.|++|+++.|.++|.+|..++.++.
T Consensus       151 ~~L~l~~N~~~--------~~~~~l~~L~~~~n~~~g~ip~~~~~l~~  190 (208)
T 2o6s_A          151 QYIWLHDNPWD--------CTCPGIRYLSEWINKHSGVVRNSAGSVAP  190 (208)
T ss_dssp             CEEECCSCCBC--------CCTTTTHHHHHHHHHCTTTBBCTTSSBCT
T ss_pred             cEEEecCCCee--------cCCCCHHHHHHHHHhCCceeeccCccccC
Confidence            88888888665        34567788888888888888877766544

>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}

Probab=99.83  E-value=3.8e-20  Score=173.18  Aligned_cols=180  Identities=17%  Similarity=0.137  Sum_probs=99.7

Q ss_pred             CeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccccCCCCCce
Q 036117          416 FDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIY  495 (641)
Q Consensus       416 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~  495 (641)
                      +.++++++.++ .+|..+  .+++++|++++|.+++..+..+..+.      +|++|++++|++++..+..+..+++|++
T Consensus        10 ~~v~c~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~------~L~~L~l~~n~l~~~~~~~~~~l~~L~~   80 (208)
T 2o6s_A           10 TTVECYSQGRT-SVPTGI--PAQTTYLDLETNSLKSLPNGVFDELT------SLTQLYLGGNKLQSLPNGVFNKLTSLTY   80 (208)
T ss_dssp             TEEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCT------TCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred             CEEEecCCCcc-CCCCCC--CCCCcEEEcCCCccCcCChhhhcccc------cCcEEECCCCccCccChhhcCCCCCcCE
Confidence            45566666655 334322  34666777777666644443444444      5666666666665433334455566666


Q ss_pred             EeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcC
Q 036117          496 LTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRI  575 (641)
Q Consensus       496 L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l  575 (641)
                      |++++|++.+..+..+..+++|++|++++|++.+..+..+..+++|++|++++|++++..+..+..+++|++|++++|++
T Consensus        81 L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~  160 (208)
T 2o6s_A           81 LNLSTNQLQSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPW  160 (208)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCB
T ss_pred             EECCCCcCCccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHHhccCCCccEEEecCCCe
Confidence            66666665544444455556666666666665554444455556666666666665555444455555666666666655


Q ss_pred             cccCCccccCCCCCCEEeCCCCcCcccCCccccCCC
Q 036117          576 KGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSS  611 (641)
Q Consensus       576 ~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~~  611 (641)
                      .+       .+++|+.|+++.|+++|.+|.+++.++
T Consensus       161 ~~-------~~~~l~~L~~~~n~~~g~ip~~~~~l~  189 (208)
T 2o6s_A          161 DC-------TCPGIRYLSEWINKHSGVVRNSAGSVA  189 (208)
T ss_dssp             CC-------CTTTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred             ec-------CCCCHHHHHHHHHhCCceeeccCcccc
Confidence            42       233455555556666555555555443

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.82  E-value=6.7e-20  Score=195.57  Aligned_cols=187  Identities=26%  Similarity=0.338  Sum_probs=104.2

Q ss_pred             CCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCc
Q 036117          390 KLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFL  469 (641)
Q Consensus       390 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L  469 (641)
                      +++.|++++|.+++ +|..+  +++|+.|++++|.++ .+|   ..+++|++|++++|.+++ +|. +..        +|
T Consensus        60 ~L~~L~Ls~n~L~~-lp~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--------~L  122 (571)
T 3cvr_A           60 QFSELQLNRLNLSS-LPDNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--------SL  122 (571)
T ss_dssp             TCSEEECCSSCCSC-CCSCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--------TC
T ss_pred             CccEEEeCCCCCCc-cCHhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--------CC
Confidence            66667777666664 44433  256666666666666 444   335666666666666664 444 322        46


Q ss_pred             cEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCC
Q 036117          470 RNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDN  549 (641)
Q Consensus       470 ~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n  549 (641)
                      ++|++++|++++ +|.   .+++|+.|++++|++.+ +|.   .+++|++|++++|++++ +|. +.  ++|+.|++++|
T Consensus       123 ~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~L~~-lp~-l~--~~L~~L~Ls~N  190 (571)
T 3cvr_A          123 KHLDVDNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEVLSVRNNQLTF-LPE-LP--ESLEALDVSTN  190 (571)
T ss_dssp             CEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC-CC--TTCCEEECCSS
T ss_pred             CEEECCCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCEEECCCCCCCC-cch-hh--CCCCEEECcCC
Confidence            666666666654 444   45566666666666654 443   34556666666666654 333 33  56666666666


Q ss_pred             cccccCChhhhcCCCC-------CEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCccccCC
Q 036117          550 QLSGVLTSNWGKCTNL-------SNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRS  610 (641)
Q Consensus       550 ~~~~~~~~~~~~l~~L-------~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~  610 (641)
                      +++ .+|. +..  +|       +.|++++|+++ .+|..+..+++|+.|+|++|++++.+|..+..+
T Consensus       191 ~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~l  253 (571)
T 3cvr_A          191 LLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQQ  253 (571)
T ss_dssp             CCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHHH
T ss_pred             CCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHHh
Confidence            655 3333 332  44       55666666555 455555555666666666666655555554443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.81  E-value=1.7e-19  Score=183.19  Aligned_cols=221  Identities=18%  Similarity=0.120  Sum_probs=143.1

Q ss_pred             CCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCcc-ccCCCCCCCE-EEcccccCCCCCChhccCCCCCcEE
Q 036117           88 PNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPP-EIGYLSDLRV-LLLYNNSLTGQIPHQLSNLQNAWLL  165 (641)
Q Consensus        88 ~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~-~l~~l~~L~~-L~l~~n~~~~~~~~~l~~l~~L~~L  165 (641)
                      +++++|+|++|+++...+.+|.++++|++|+|++|.+.+.+|. +|.+++++++ +.+..|+++...|..|.++++|++|
T Consensus        30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L  109 (350)
T 4ay9_X           30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL  109 (350)
T ss_dssp             TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred             CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence            5677788888877754445677778888888888777655543 5677777664 4555677776667777777888888


Q ss_pred             EeccccCCCCCCcccCCCCCCCEEEcCC-CCCCCCch-hhcCC-CCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccC-
Q 036117          166 RIGANYLEDPDPVKFKGMASLTDLWLDY-NLLEKFPS-FIAEC-SKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTK-  241 (641)
Q Consensus       166 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~-~~~~~l~~-~l~~~-~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~-  241 (641)
                      ++++|.+....+..+....++..+++.+ +.+..++. .+..+ ..++.|++++|.+. .++...+ ...+|+++++++ 
T Consensus       110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f-~~~~L~~l~l~~~  187 (350)
T 4ay9_X          110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAF-NGTQLDELNLSDN  187 (350)
T ss_dssp             EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSS-TTEEEEEEECTTC
T ss_pred             cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhc-cccchhHHhhccC
Confidence            8888877777766666667777777754 45555554 23333 35777788887776 5555443 345677777765 


Q ss_pred             CcccccCCcccCCCCCCCEEEcCCCcCCccCCcccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCc
Q 036117          242 NSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSA  314 (641)
Q Consensus       242 n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~  314 (641)
                      |.++...+..|..+++|++|++++|+++...+..   +.+|+.|.+.++.-...+| .+..+++|+.+++.++
T Consensus       188 n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L~~L~~l~~~~l~~lP-~l~~l~~L~~l~l~~~  256 (350)
T 4ay9_X          188 NNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENLKKLRARSTYNLKKLP-TLEKLVALMEASLTYP  256 (350)
T ss_dssp             TTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTCCEEECTTCTTCCCCC-CTTTCCSCCEEECSCH
T ss_pred             CcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccchHhhhccCCCcCcCC-CchhCcChhhCcCCCC
Confidence            4455333345677778888888888777433322   3445555544444334444 4667777888777654

>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}

Probab=99.81  E-value=8.2e-20  Score=194.91  Aligned_cols=196  Identities=25%  Similarity=0.328  Sum_probs=145.7

Q ss_pred             cccce-eeCCCCCEEEEEcCCCCCccccCCcCCCCCCCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccc
Q 036117           53 NWNGI-QCNEVGSISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPE  131 (641)
Q Consensus        53 ~~~gv-~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~  131 (641)
                      .|.|+ .|. .++++.|+++++.+.+ +| ..+  +++|++|++++|.++ .+|   ..+++|++|++++|.+++ +|. 
T Consensus        49 ~~~~l~~C~-~~~L~~L~Ls~n~L~~-lp-~~l--~~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-  117 (571)
T 3cvr_A           49 AVSLLKECL-INQFSELQLNRLNLSS-LP-DNL--PPQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-  117 (571)
T ss_dssp             HHHHHHHHH-HTTCSEEECCSSCCSC-CC-SCC--CTTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-
T ss_pred             hhhhccccc-cCCccEEEeCCCCCCc-cC-HhH--cCCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-
Confidence            68888 675 4689999999999886 66 334  478999999999998 566   457899999999999986 676 


Q ss_pred             cCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEeccccCCCCCCcccCCCCCCCEEEcCCCCCCCCchhhcCCCCCcE
Q 036117          132 IGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMF  211 (641)
Q Consensus       132 l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~~~~L~~  211 (641)
                      +..  +|++|++++|.+++ +|.   .+++|++|++++|.+++++.    .+++|++|++++|.+..+|. +.  ++|++
T Consensus       118 l~~--~L~~L~Ls~N~l~~-lp~---~l~~L~~L~Ls~N~l~~lp~----~l~~L~~L~Ls~N~L~~lp~-l~--~~L~~  184 (571)
T 3cvr_A          118 LPA--SLKHLDVDNNQLTM-LPE---LPALLEYINADNNQLTMLPE----LPTSLEVLSVRNNQLTFLPE-LP--ESLEA  184 (571)
T ss_dssp             CCT--TCCEEECCSSCCSC-CCC---CCTTCCEEECCSSCCSCCCC----CCTTCCEEECCSSCCSCCCC-CC--TTCCE
T ss_pred             hhc--CCCEEECCCCcCCC-CCC---cCccccEEeCCCCccCcCCC----cCCCcCEEECCCCCCCCcch-hh--CCCCE
Confidence            655  89999999999886 555   67888999999888887544    56788888888888877777 54  78888


Q ss_pred             EEeeCCcCCCCCChhhhcCCCCC-------cEEeccCCcccccCCcccCCCCCCCEEEcCCCcCCccCCcccCC
Q 036117          212 LDLSDNLIMGHIPIEQLTHLENL-------EYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGL  278 (641)
Q Consensus       212 L~l~~~~~~~~~~~~~l~~l~~L-------~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~  278 (641)
                      |++++|.++ .+|. + ..  +|       +.|++++|.++ .+|..+..+++|+.|++++|.+++..|..+..
T Consensus       185 L~Ls~N~L~-~lp~-~-~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~p~~l~~  252 (571)
T 3cvr_A          185 LDVSTNLLE-SLPA-V-PV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRIRESLSQ  252 (571)
T ss_dssp             EECCSSCCS-SCCC-C-C----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHHHHHHHH
T ss_pred             EECcCCCCC-chhh-H-HH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcCHHHHHH
Confidence            888888777 5554 2 22  45       67777777766 45666666666777777777666655554443

>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*

Probab=99.79  E-value=1.2e-18  Score=176.89  Aligned_cols=241  Identities=18%  Similarity=0.126  Sum_probs=146.5

Q ss_pred             CEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCch-hhh
Q 036117          331 TFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIP-QQI  409 (641)
Q Consensus       331 ~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~-~~~  409 (641)
                      ++++.++++++ .+|..+  .+++++|++++|+++.+             -+..|..+++|++|+|++|++.+.++ .+|
T Consensus        12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i-------------~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f   75 (350)
T 4ay9_X           12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVI-------------QKGAFSGFGDLEKIEISQNDVLEVIEADVF   75 (350)
T ss_dssp             TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEE-------------CTTSSTTCTTCCEEEEECCTTCCEECTTSB
T ss_pred             CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCc-------------CHHHHcCCCCCCEEECcCCCCCCccChhHh
Confidence            67777777777 566655  35677777666655433             23457778888888888888765554 456


Q ss_pred             hCCCCCCe-EecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCC-cccccCCccc
Q 036117          410 GNLTNLFD-LQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYN-NFSGKLPPGI  487 (641)
Q Consensus       410 ~~l~~L~~-L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n-~l~~~~~~~~  487 (641)
                      .+++++++ +.+.+|++....+..|..+++|++|++++|.+....+..+....      ++..+++.++ .+....+..+
T Consensus        76 ~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~------~l~~l~l~~~~~i~~l~~~~f  149 (350)
T 4ay9_X           76 SNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSL------QKVLLDIQDNINIHTIERNSF  149 (350)
T ss_dssp             CSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBS------SCEEEEEESCTTCCEECTTSS
T ss_pred             hcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccc------hhhhhhhccccccccccccch
Confidence            77777665 45566777766677778888888888888887644333333333      5667777553 4442222334


Q ss_pred             cCC-CCCceEeccCCcccCCCccccccCCCCcEEECCC-CcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCC
Q 036117          488 CRG-GNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQ-NRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNL  565 (641)
Q Consensus       488 ~~~-~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L  565 (641)
                      ..+ ..++.|++++|++.. +|.......+|+++++++ |.+....+..|+.+++|++||+++|+++...+..   +.+|
T Consensus       150 ~~~~~~l~~L~L~~N~i~~-i~~~~f~~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~~---~~~L  225 (350)
T 4ay9_X          150 VGLSFESVILWLNKNGIQE-IHNSAFNGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSYG---LENL  225 (350)
T ss_dssp             TTSBSSCEEEECCSSCCCE-ECTTSSTTEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSSS---CTTC
T ss_pred             hhcchhhhhhccccccccC-CChhhccccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChhh---hccc
Confidence            443 346667777777763 333333445677777764 4444333345667777777777777776443333   3445


Q ss_pred             CEEeCcCCcCcccCCccccCCCCCCEEeCCCCc
Q 036117          566 SNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQ  598 (641)
Q Consensus       566 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~  598 (641)
                      +.|.+.++.-.+.+|. +.++++|+.++++++.
T Consensus       226 ~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~~~~  257 (350)
T 4ay9_X          226 KKLRARSTYNLKKLPT-LEKLVALMEASLTYPS  257 (350)
T ss_dssp             CEEECTTCTTCCCCCC-TTTCCSCCEEECSCHH
T ss_pred             hHhhhccCCCcCcCCC-chhCcChhhCcCCCCc
Confidence            5555555544445553 5667777777776543

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.78  E-value=2.5e-18  Score=161.95  Aligned_cols=156  Identities=16%  Similarity=0.215  Sum_probs=102.9

Q ss_pred             CEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCC-ccccCCCCCceEeccCCcccCCCccccccCCCCc
Q 036117          440 VKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLP-PGICRGGNLIYLTANVNKLVGPIPESLWNCTGLT  518 (641)
Q Consensus       440 ~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~-~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~  518 (641)
                      +.+++++|.++ .+|..+..        .+++|++++|.+++..+ ..+..++.|+.|++++|++.+..+..|.++++|+
T Consensus        14 ~~l~~s~n~l~-~iP~~~~~--------~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~   84 (220)
T 2v70_A           14 TTVDCSNQKLN-KIPEHIPQ--------YTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVN   84 (220)
T ss_dssp             TEEECCSSCCS-SCCSCCCT--------TCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             CEeEeCCCCcc-cCccCCCC--------CCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCC
Confidence            46777777765 45544322        46677777777765543 3356667777777777776665555666677777


Q ss_pred             EEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCc
Q 036117          519 RVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQ  598 (641)
Q Consensus       519 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~  598 (641)
                      +|++++|++.+..+..|+.+++|++|++++|++++..|..+..+++|++|+|++|++++..|..|..+++|++|++++|+
T Consensus        85 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~  164 (220)
T 2v70_A           85 EILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANP  164 (220)
T ss_dssp             EEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCC
T ss_pred             EEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcC
Confidence            77777777766666666667777777777777776666666667777777777777766666666677777777777776


Q ss_pred             CcccCC
Q 036117          599 LTGKIP  604 (641)
Q Consensus       599 l~~~ip  604 (641)
                      +.+..+
T Consensus       165 l~c~c~  170 (220)
T 2v70_A          165 FNCNCY  170 (220)
T ss_dssp             EECSGG
T ss_pred             CcCCCc
Confidence            665433

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.77  E-value=3.8e-18  Score=160.64  Aligned_cols=153  Identities=14%  Similarity=0.177  Sum_probs=106.4

Q ss_pred             CEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcE
Q 036117          440 VKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTR  519 (641)
Q Consensus       440 ~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~  519 (641)
                      +.++.+++.++ .+|..+.        +.+++|++++|.+++..+..+..+++|+.|++++|++.+..|..|.++++|++
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--------~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~   84 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--------ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNS   84 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--------TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCE
T ss_pred             CEEEcCCCCcC-cCCCccC--------cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCE
Confidence            46777777665 4554432        16777777777777555556667777777777777777666677777777777


Q ss_pred             EECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcC
Q 036117          520 VRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQL  599 (641)
Q Consensus       520 L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l  599 (641)
                      |++++|++.+..+..|..+++|++|++++|++++..|..+..+++|++|+|++|++++..+..+..+++|+.|+|++|++
T Consensus        85 L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B           85 LVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             EECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence            77777777755555566777777777777777776677777777777777777777766666677777777777777776


Q ss_pred             cc
Q 036117          600 TG  601 (641)
Q Consensus       600 ~~  601 (641)
                      ..
T Consensus       165 ~c  166 (220)
T 2v9t_B          165 IC  166 (220)
T ss_dssp             EC
T ss_pred             CC
Confidence            53

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.77  E-value=3.5e-18  Score=184.53  Aligned_cols=171  Identities=23%  Similarity=0.263  Sum_probs=97.6

Q ss_pred             CCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCC
Q 036117          387 LLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGP  466 (641)
Q Consensus       387 ~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~  466 (641)
                      .++.|+.|++++|.+... + .+..+++|+.|+|++|.+.+..+  +..+++|+.|++++|.+.+ +| .+..+.     
T Consensus        41 ~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~-l~-~l~~l~-----  109 (605)
T 1m9s_A           41 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLFLDENKIKD-LS-SLKDLK-----  109 (605)
T ss_dssp             HHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCC-CT-TSTTCT-----
T ss_pred             cCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEECcCCCCCC-Ch-hhccCC-----
Confidence            456667777777766533 2 36666777777777776664333  6666677777777766653 22 344444     


Q ss_pred             CCccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeC
Q 036117          467 RFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDL  546 (641)
Q Consensus       467 ~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  546 (641)
                       +|++|++++|.+.+ + ..+..+++|+.|++++|++.+.  ..+..+++|+.|+|++|.+.+..+  +..+++|+.|+|
T Consensus       110 -~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~L  182 (605)
T 1m9s_A          110 -KLKSLSLEHNGISD-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISDIVP--LAGLTKLQNLYL  182 (605)
T ss_dssp             -TCCEEECTTSCCCC-C-GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred             -CCCEEEecCCCCCC-C-ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCCcCCCchh--hccCCCCCEEEC
Confidence             56666666666653 2 3355556666666666655543  345555556666666655554443  555555566666


Q ss_pred             CCCcccccCChhhhcCCCCCEEeCcCCcCcc
Q 036117          547 GDNQLSGVLTSNWGKCTNLSNFRISGNRIKG  577 (641)
Q Consensus       547 s~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~  577 (641)
                      ++|++++.  ..+..+++|+.|+|++|++.+
T Consensus       183 s~N~i~~l--~~l~~l~~L~~L~L~~N~l~~  211 (605)
T 1m9s_A          183 SKNHISDL--RALAGLKNLDVLELFSQECLN  211 (605)
T ss_dssp             CSSCCCBC--GGGTTCTTCSEEECCSEEEEC
T ss_pred             cCCCCCCC--hHHccCCCCCEEEccCCcCcC
Confidence            65555543  235555555555555555543

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.76  E-value=2.2e-18  Score=169.86  Aligned_cols=189  Identities=22%  Similarity=0.257  Sum_probs=139.2

Q ss_pred             CCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCcc
Q 036117          391 LEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLR  470 (641)
Q Consensus       391 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~  470 (641)
                      +..+.+..+.+.+..+  +..+++|+.|++++|.+.. ++ .+..+++|++|++++|.+++.. . +..+.      +|+
T Consensus        26 ~~~~~l~~~~~~~~~~--~~~l~~L~~L~l~~~~i~~-~~-~~~~l~~L~~L~L~~n~l~~~~-~-l~~l~------~L~   93 (291)
T 1h6t_A           26 TIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIK-P-LANLK------NLG   93 (291)
T ss_dssp             HHHHHTTCSCTTSEEC--HHHHHTCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCG-G-GTTCT------TCC
T ss_pred             HHHHHhcCCCcccccc--hhhcCcccEEEccCCCccc-Ch-hHhcCCCCCEEEccCCccCCCc-c-cccCC------CCC
Confidence            3444566666654432  3467788899999888874 33 3777888999999988887533 3 66666      788


Q ss_pred             EEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCc
Q 036117          471 NVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQ  550 (641)
Q Consensus       471 ~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~  550 (641)
                      +|++++|.+++  ++.+..+++|+.|++++|++.+.  ..+..+++|+.|++++|++.+.  ..++.+++|+.|++++|+
T Consensus        94 ~L~l~~n~l~~--~~~l~~l~~L~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~  167 (291)
T 1h6t_A           94 WLFLDENKVKD--LSSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQ  167 (291)
T ss_dssp             EEECCSSCCCC--GGGGTTCTTCCEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSC
T ss_pred             EEECCCCcCCC--ChhhccCCCCCEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCc
Confidence            88888888864  23477788888888888887753  3577788888888888888754  467778888888888888


Q ss_pred             ccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcc
Q 036117          551 LSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTG  601 (641)
Q Consensus       551 ~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  601 (641)
                      +++..+  +..+++|++|++++|.+++ +| .+..+++|+.|++++|++..
T Consensus       168 l~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          168 ISDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CCCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred             cccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence            876654  7778888888888888874 33 37788888888888888764

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.76  E-value=1e-17  Score=158.77  Aligned_cols=155  Identities=18%  Similarity=0.113  Sum_probs=95.3

Q ss_pred             CCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCc
Q 036117          439 LVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLT  518 (641)
Q Consensus       439 L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~  518 (641)
                      -+.++.+++.+. .+|..+.        ++|++|++++|.+++..|..+..+++|+.|++++|++....+..|..+++|+
T Consensus        21 ~~~v~c~~~~l~-~ip~~~~--------~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~   91 (229)
T 3e6j_A           21 GTTVDCRSKRHA-SVPAGIP--------TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLT   91 (229)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--------TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCC
T ss_pred             CCEeEccCCCcC-ccCCCCC--------CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcC
Confidence            445666666654 4454332        1566666666666665566666666666666666666544444556666666


Q ss_pred             EEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCc
Q 036117          519 RVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQ  598 (641)
Q Consensus       519 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~  598 (641)
                      .|++++|++.+..+..|..+++|++|++++|+++ .+|..+..+++|++|++++|++++..+..+..+++|+.|++++|+
T Consensus        92 ~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~  170 (229)
T 3e6j_A           92 VLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNP  170 (229)
T ss_dssp             EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSC
T ss_pred             EEECCCCcCCccChhHhCcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCC
Confidence            6666666666555555666666666666666666 455566666666666666666665544556666666666666666


Q ss_pred             CcccC
Q 036117          599 LTGKI  603 (641)
Q Consensus       599 l~~~i  603 (641)
                      +.+..
T Consensus       171 ~~c~c  175 (229)
T 3e6j_A          171 WDCEC  175 (229)
T ss_dssp             BCTTB
T ss_pred             ccCCc
Confidence            65443

>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}

Probab=99.76  E-value=7.5e-18  Score=158.60  Aligned_cols=152  Identities=18%  Similarity=0.199  Sum_probs=80.9

Q ss_pred             eEecccCcCCccCcccccCCCCCCEEEccCCcCcccCC-cchhcCCCCCCCCCccEEEccCCcccccCCccccCCCCCce
Q 036117          417 DLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLP-PEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIY  495 (641)
Q Consensus       417 ~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~-~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~  495 (641)
                      .+++++|.++ .+|..+  .+.+++|++++|.+++..+ ..+..+.      +|++|++++|++++..+..+..+++|+.
T Consensus        15 ~l~~s~n~l~-~iP~~~--~~~~~~L~L~~N~l~~~~~~~~~~~l~------~L~~L~L~~N~i~~i~~~~~~~l~~L~~   85 (220)
T 2v70_A           15 TVDCSNQKLN-KIPEHI--PQYTAELRLNNNEFTVLEATGIFKKLP------QLRKINFSNNKITDIEEGAFEGASGVNE   85 (220)
T ss_dssp             EEECCSSCCS-SCCSCC--CTTCSEEECCSSCCCEECCCCCGGGCT------TCCEEECCSSCCCEECTTTTTTCTTCCE
T ss_pred             EeEeCCCCcc-cCccCC--CCCCCEEEcCCCcCCccCchhhhccCC------CCCEEECCCCcCCEECHHHhCCCCCCCE
Confidence            5555555554 234332  1234555555555554433 2234444      5555555555555444445555555555


Q ss_pred             EeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcC
Q 036117          496 LTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRI  575 (641)
Q Consensus       496 L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l  575 (641)
                      |++++|++.+..+..|..+++|++|++++|++.+..+..+..+++|+.|++++|++++..|..+..+++|++|++++|++
T Consensus        86 L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l  165 (220)
T 2v70_A           86 ILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPF  165 (220)
T ss_dssp             EECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCE
T ss_pred             EECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCC
Confidence            55555555555445555555555555555555555555555555555555555555555555555555555555555555


Q ss_pred             cc
Q 036117          576 KG  577 (641)
Q Consensus       576 ~~  577 (641)
                      .+
T Consensus       166 ~c  167 (220)
T 2v70_A          166 NC  167 (220)
T ss_dssp             EC
T ss_pred             cC
Confidence            43

>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A

Probab=99.76  E-value=7.5e-18  Score=165.98  Aligned_cols=172  Identities=23%  Similarity=0.362  Sum_probs=83.7

Q ss_pred             CCCCCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcE
Q 036117           85 SAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWL  164 (641)
Q Consensus        85 ~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~  164 (641)
                      +.+++|++|++++|.+.+. + .+..+++|++|++++|.+++..+  +..+++|++|++++|.+++.  ..+..+++|++
T Consensus        43 ~~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~  116 (291)
T 1h6t_A           43 NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKDL--SSLKDLKKLKS  116 (291)
T ss_dssp             HHHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCG--GGGTTCTTCCE
T ss_pred             hhcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCCC--hhhccCCCCCE
Confidence            3455566666666655532 2 25556666666666666654322  55556666666666655431  22444555555


Q ss_pred             EEeccccCCCCCCcccCCCCCCCEEEcCCCCCCCCchhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCcc
Q 036117          165 LRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSF  244 (641)
Q Consensus       165 L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~  244 (641)
                      |++++|.+.+.  ..+..+++|++|++++|.+..+ ..+                         ..+++|++|++++|.+
T Consensus       117 L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~-~~l-------------------------~~l~~L~~L~L~~N~l  168 (291)
T 1h6t_A          117 LSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI-TVL-------------------------SRLTKLDTLSLEDNQI  168 (291)
T ss_dssp             EECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC-GGG-------------------------GGCTTCSEEECCSSCC
T ss_pred             EECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc-hhh-------------------------ccCCCCCEEEccCCcc
Confidence            55555544432  2233344444444444444333 223                         4444455555555444


Q ss_pred             cccCCcccCCCCCCCEEEcCCCcCCccCCcccCCCCcccEeeeecccccc
Q 036117          245 EGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHG  294 (641)
Q Consensus       245 ~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~  294 (641)
                      ++..+  +..+++|++|++++|.+++ ++ .+..+++|+.|++++|.+..
T Consensus       169 ~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~  214 (291)
T 1h6t_A          169 SDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN  214 (291)
T ss_dssp             CCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred             ccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence            43222  4445555555555555542 22 24555555555555555543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.75  E-value=6.6e-18  Score=172.12  Aligned_cols=176  Identities=22%  Similarity=0.138  Sum_probs=97.5

Q ss_pred             CeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchh-cCCCCCCCCCccEEEccCCcccccCCccccCCCCCc
Q 036117          416 FDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIG-NSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLI  494 (641)
Q Consensus       416 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~-~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~  494 (641)
                      +.++++++.+. .+|..+.  +.++.|++++|.+++..+..+. .+.      +|++|++++|++++..+..+..++.|+
T Consensus        21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~------~L~~L~L~~N~i~~i~~~~~~~l~~L~   91 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLT------NLHSLLLSHNHLNFISSEAFVPVPNLR   91 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCT------TCCEEECCSSCCCEECTTTTTTCTTCC
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhccc------ccCEEECCCCcCCccChhhccCCCCCC
Confidence            45666666666 3454332  3466667776666654444443 444      566666666666554445555566666


Q ss_pred             eEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhh---hcCCCCCEEeCc
Q 036117          495 YLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNW---GKCTNLSNFRIS  571 (641)
Q Consensus       495 ~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~---~~l~~L~~L~L~  571 (641)
                      .|++++|++.+..+..|..+++|+.|++++|++.+..+..|..+++|+.|+|++|++++..+..+   ..+++|+.|+|+
T Consensus        92 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~  171 (361)
T 2xot_A           92 YLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLS  171 (361)
T ss_dssp             EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECC
T ss_pred             EEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECC
Confidence            66666666554444455556666666666666655555555556666666666666554333333   345555666666


Q ss_pred             CCcCcccCCccccCCCC--CCEEeCCCCcCc
Q 036117          572 GNRIKGGIPAELGNLTY--LQNLDIFDNQLT  600 (641)
Q Consensus       572 ~n~l~~~~p~~l~~l~~--L~~L~L~~n~l~  600 (641)
                      +|++++..+..+..++.  ++.|+|++|++.
T Consensus       172 ~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~  202 (361)
T 2xot_A          172 SNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE  202 (361)
T ss_dssp             SSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred             CCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence            66555433344555544  255555555554

>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A

Probab=99.74  E-value=2.3e-17  Score=155.24  Aligned_cols=152  Identities=17%  Similarity=0.191  Sum_probs=101.2

Q ss_pred             CeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccccCCCCCce
Q 036117          416 FDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIY  495 (641)
Q Consensus       416 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~  495 (641)
                      +.++++++.++ .+|..+.  +++++|++++|.+++..+..+..+.      +|++|++++|++++..|..+..+++|++
T Consensus        14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~------~L~~L~Ls~N~i~~~~~~~~~~l~~L~~   84 (220)
T 2v9t_B           14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYK------KLRRIDLSNNQISELAPDAFQGLRSLNS   84 (220)
T ss_dssp             TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCT------TCCEEECCSSCCCEECTTTTTTCSSCCE
T ss_pred             CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCC------CCCEEECCCCcCCCcCHHHhhCCcCCCE
Confidence            45666666666 4454332  5677777777777655555555555      6777777777776666666777777777


Q ss_pred             EeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcC
Q 036117          496 LTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRI  575 (641)
Q Consensus       496 L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l  575 (641)
                      |++++|++....+..|..+++|++|++++|++.+..+..|..+++|+.|+|++|++++..+..+..+++|++|++++|++
T Consensus        85 L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~  164 (220)
T 2v9t_B           85 LVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPF  164 (220)
T ss_dssp             EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCE
T ss_pred             EECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCc
Confidence            77777777654445566677777777777777766666677777777777777777766666666677777777777766


Q ss_pred             c
Q 036117          576 K  576 (641)
Q Consensus       576 ~  576 (641)
                      .
T Consensus       165 ~  165 (220)
T 2v9t_B          165 I  165 (220)
T ss_dssp             E
T ss_pred             C
Confidence            5

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.74  E-value=1.5e-17  Score=153.81  Aligned_cols=151  Identities=17%  Similarity=0.159  Sum_probs=102.8

Q ss_pred             CccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCC
Q 036117          468 FLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLG  547 (641)
Q Consensus       468 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls  547 (641)
                      +|++|++++|.++ .+| .+..+++|+.|++++|.+.  .+..+..+++|++|++++|++.+..+..++.+++|++|+++
T Consensus        45 ~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls  120 (197)
T 4ezg_A           45 SLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS  120 (197)
T ss_dssp             TCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred             CccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence            4555555555544 333 4555566666666666443  22356677778888888887777677777778888888888


Q ss_pred             CCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCccccCCCCCCEEeCcCCCCcc
Q 036117          548 DNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSD  625 (641)
Q Consensus       548 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~~~L~~l~l~~n~l~~  625 (641)
                      +|++++..+..+..+++|++|++++|+..+.+| .+..+++|++|++++|.+++ ++ .+..+++|+.|++++|++.+
T Consensus       121 ~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~  195 (197)
T 4ezg_A          121 HSAHDDSILTKINTLPKVNSIDLSYNGAITDIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG  195 (197)
T ss_dssp             SSBCBGGGHHHHTTCSSCCEEECCSCTBCCCCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred             CCccCcHhHHHHhhCCCCCEEEccCCCCccccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence            888877777777888888888888887333455 57788888888888888874 54 66777888888888888753

>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A

Probab=99.74  E-value=1.2e-17  Score=180.42  Aligned_cols=224  Identities=19%  Similarity=0.193  Sum_probs=176.9

Q ss_pred             CCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCc
Q 036117          390 KLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFL  469 (641)
Q Consensus       390 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L  469 (641)
                      .+..+.+..+.+.+..+  +..++.|+.|++++|.+.. ++ .+..+++|+.|++++|.+.+..+  +..+.      +|
T Consensus        22 ~l~~l~l~~~~i~~~~~--~~~L~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~------~L   89 (605)
T 1m9s_A           22 ETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKS-VQ-GIQYLPNVTKLFLNGNKLTDIKP--LTNLK------NL   89 (605)
T ss_dssp             HHHHHHTTCSCTTSEEC--HHHHTTCCCCBCTTCCCCC-CT-TGGGCTTCCEEECTTSCCCCCGG--GGGCT------TC
T ss_pred             HHHHHhccCCCcccccc--hhcCCCCCEEECcCCCCCC-Ch-HHccCCCCCEEEeeCCCCCCChh--hccCC------CC
Confidence            45566677777775543  4678899999999999874 44 58889999999999999985443  66776      89


Q ss_pred             cEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCC
Q 036117          470 RNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDN  549 (641)
Q Consensus       470 ~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n  549 (641)
                      +.|++++|.+.+ + +.+..+++|+.|++++|++.+.  ..+..+++|+.|+|++|.+.+.  ..++.+++|+.|+|++|
T Consensus        90 ~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N  163 (605)
T 1m9s_A           90 GWLFLDENKIKD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDN  163 (605)
T ss_dssp             CEEECCSSCCCC-C-TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTCSEEECCSSCCCCC--GGGGSCTTCSEEECCSS
T ss_pred             CEEECcCCCCCC-C-hhhccCCCCCEEEecCCCCCCC--ccccCCCccCEEECCCCccCCc--hhhcccCCCCEEECcCC
Confidence            999999999974 3 3788899999999999999853  4588999999999999999865  67889999999999999


Q ss_pred             cccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCccccC-------------CCCCCEE
Q 036117          550 QLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFR-------------SSFLIRL  616 (641)
Q Consensus       550 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~-------------~~~L~~l  616 (641)
                      .+++..|  +..+++|+.|+|++|++.+.  ..+..+++|+.|+|++|++.+.....+..             ....+.+
T Consensus       164 ~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~p~~~~~~l~~~~~l~~l~g~~~~~~~i  239 (605)
T 1m9s_A          164 QISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNKPINHQSNLVVPNTVKNTDGSLVTPEII  239 (605)
T ss_dssp             CCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECCCCCCCSSCEEECCCBCSSSCBCCCSEE
T ss_pred             cCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCCcccccccEEecccccccCCCCcCchhc
Confidence            9998766  88999999999999999864  46899999999999999998642222111             2233444


Q ss_pred             eCcCCCCcccCcccccCCC
Q 036117          617 NLRRNQLSDKIPAEIGKLS  635 (641)
Q Consensus       617 ~l~~n~l~~~~p~~~~~l~  635 (641)
                      ...++...|.+|+.+..++
T Consensus       240 ~~~g~~~~~~i~~~l~~~~  258 (605)
T 1m9s_A          240 SDDGDYEKPNVKWHLPEFT  258 (605)
T ss_dssp             STTCEEETTEEECCCSSCC
T ss_pred             ccCCcccCCcceecccccc
Confidence            4555556667777666554

>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}

Probab=99.73  E-value=6.8e-17  Score=153.15  Aligned_cols=157  Identities=24%  Similarity=0.277  Sum_probs=87.0

Q ss_pred             CCCccccceeeCCCCCEEEEEcCCCCCccccCCcCCCCCCCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCC
Q 036117           49 SGPCNWNGIQCNEVGSISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPI  128 (641)
Q Consensus        49 ~~~c~~~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~  128 (641)
                      ...|.|+++.|+.. +          +. .+| ..+  .++|++|+|++|.+.+..|..+..+++|++|++++|.+....
T Consensus        16 ~~~Cs~~~v~c~~~-~----------l~-~ip-~~~--~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~   80 (229)
T 3e6j_A           16 QCSCSGTTVDCRSK-R----------HA-SVP-AGI--PTNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALP   80 (229)
T ss_dssp             TCEEETTEEECTTS-C----------CS-SCC-SCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred             CCEEeCCEeEccCC-C----------cC-ccC-CCC--CCCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcC
Confidence            46899999999742 1          11 223 111  256666666666666655666666666666666666665443


Q ss_pred             ccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEeccccCCCCCCcccCCCCCCCEEEcCCCCCCCCchhhcCCCC
Q 036117          129 PPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSK  208 (641)
Q Consensus       129 p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~~~~  208 (641)
                      +..|..+++|++|++++|.+++..                        +..|..+++|++|++++|.+..+|..+..+++
T Consensus        81 ~~~~~~l~~L~~L~Ls~N~l~~l~------------------------~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~  136 (229)
T 3e6j_A           81 VGVFDSLTQLTVLDLGTNQLTVLP------------------------SAVFDRLVHLKELFMCCNKLTELPRGIERLTH  136 (229)
T ss_dssp             TTTTTTCTTCCEEECCSSCCCCCC------------------------TTTTTTCTTCCEEECCSSCCCSCCTTGGGCTT
T ss_pred             hhhcccCCCcCEEECCCCcCCccC------------------------hhHhCcchhhCeEeccCCcccccCcccccCCC
Confidence            344555555666665555555443                        34444445555555555555555555555555


Q ss_pred             CcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCccc
Q 036117          209 LMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFE  245 (641)
Q Consensus       209 L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~  245 (641)
                      |++|++++|.+. .++...+..+++|+.|++++|.+.
T Consensus       137 L~~L~L~~N~l~-~~~~~~~~~l~~L~~L~l~~N~~~  172 (229)
T 3e6j_A          137 LTHLALDQNQLK-SIPHGAFDRLSSLTHAYLFGNPWD  172 (229)
T ss_dssp             CSEEECCSSCCC-CCCTTTTTTCTTCCEEECTTSCBC
T ss_pred             CCEEECCCCcCC-ccCHHHHhCCCCCCEEEeeCCCcc
Confidence            555555555554 333333455555555555555544

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.72  E-value=5.4e-20  Score=197.49  Aligned_cols=216  Identities=17%  Similarity=0.128  Sum_probs=121.9

Q ss_pred             CCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCC
Q 036117          386 GLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFG  465 (641)
Q Consensus       386 ~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~  465 (641)
                      ..++.|+.|++++|+++ .+|..++.+++|+.|++++|......+..+           ..+...+..|..+..+.    
T Consensus       346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll-----------~~~~~~~~~~~~l~~l~----  409 (567)
T 1dce_A          346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLM-----------RALDPLLYEKETLQYFS----  409 (567)
T ss_dssp             STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHH-----------HHHCTGGGHHHHHHHHH----
T ss_pred             ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHH-----------HhcccccCCHHHHHHHH----
Confidence            34567777777777775 567777777777777775543111111100           01112233344444444    


Q ss_pred             CCCccEEE-ccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEE
Q 036117          466 PRFLRNVS-FSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYI  544 (641)
Q Consensus       466 ~~~L~~L~-ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L  544 (641)
                        +|+.|+ ++.|.+.           .|..+.+++|.+....+      ..|+.|++++|.+++ +|. ++.+++|+.|
T Consensus       410 --~L~~L~~l~~n~~~-----------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L  468 (567)
T 1dce_A          410 --TLKAVDPMRAAYLD-----------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHL  468 (567)
T ss_dssp             --HHHHHCGGGHHHHH-----------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEE
T ss_pred             --hcccCcchhhcccc-----------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEe
Confidence              455554 3333221           23333344444432111      236666666666664 344 6666777777


Q ss_pred             eCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccC-CccccCCCCCCEEeCcCCCC
Q 036117          545 DLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKI-PAQLFRSSFLIRLNLRRNQL  623 (641)
Q Consensus       545 ~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i-p~~l~~~~~L~~l~l~~n~l  623 (641)
                      ++++|.++ .+|..++.+++|+.|+|++|++++ +| .++++++|++|+|++|.+++.+ |..+..+++|+.|++++|++
T Consensus       469 ~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l  545 (567)
T 1dce_A          469 DLSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSL  545 (567)
T ss_dssp             ECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGG
T ss_pred             ecCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcC
Confidence            77777766 556667777777777777777764 45 6667777777777777776554 66677777777777777777


Q ss_pred             cccCccc---ccCCCCCcCCC
Q 036117          624 SDKIPAE---IGKLSRLQYLD  641 (641)
Q Consensus       624 ~~~~p~~---~~~l~~L~~l~  641 (641)
                      ++..|..   +..+++|+.||
T Consensus       546 ~~~~~~~~~l~~~lp~L~~L~  566 (567)
T 1dce_A          546 CQEEGIQERLAEMLPSVSSIL  566 (567)
T ss_dssp             GGSSSCTTHHHHHCTTCSEEE
T ss_pred             CCCccHHHHHHHHCcccCccC
Confidence            6654422   23356665543

>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*

Probab=99.72  E-value=3.7e-20  Score=198.82  Aligned_cols=191  Identities=18%  Similarity=0.132  Sum_probs=129.5

Q ss_pred             CCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccccCC
Q 036117          411 NLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRG  490 (641)
Q Consensus       411 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~  490 (641)
                      .++.|+.|++++|.+. .+|..++.+++|+.|++++|......|..            +     ..+...+..|..+..+
T Consensus       347 ~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~l------------l-----~~~~~~~~~~~~l~~l  408 (567)
T 1dce_A          347 TDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILL------------M-----RALDPLLYEKETLQYF  408 (567)
T ss_dssp             TTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHH------------H-----HHHCTGGGHHHHHHHH
T ss_pred             cCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHH------------H-----HhcccccCCHHHHHHH
Confidence            4556666666666655 45655666666666665443211111100            0     0112334455566666


Q ss_pred             CCCceEe-ccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEe
Q 036117          491 GNLIYLT-ANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFR  569 (641)
Q Consensus       491 ~~L~~L~-l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~  569 (641)
                      ++|+.|+ ++.|.+.           .|..+.+++|.+.+..+      ..|+.|++++|.+++ +|. ++.+++|+.|+
T Consensus       409 ~~L~~L~~l~~n~~~-----------~L~~l~l~~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~  469 (567)
T 1dce_A          409 STLKAVDPMRAAYLD-----------DLRSKFLLENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLD  469 (567)
T ss_dssp             HHHHHHCGGGHHHHH-----------HHHHHHHHHHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEE
T ss_pred             HhcccCcchhhcccc-----------hhhhhhhhcccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEee
Confidence            6666666 4444332           23344455555553222      248899999999886 565 88899999999


Q ss_pred             CcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCccccCCCCCCEEeCcCCCCcccC-cccccCCCCCcCCC
Q 036117          570 ISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKI-PAEIGKLSRLQYLD  641 (641)
Q Consensus       570 L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~~~L~~l~l~~n~l~~~~-p~~~~~l~~L~~l~  641 (641)
                      +++|.++ .+|..++++++|+.|+|++|.+++ +| .+..+++|+.|++++|++++.. |..++.+++|+.||
T Consensus       470 Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~  539 (567)
T 1dce_A          470 LSHNRLR-ALPPALAALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLN  539 (567)
T ss_dssp             CCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEE
T ss_pred             cCccccc-ccchhhhcCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEE
Confidence            9999998 788899999999999999999985 77 7888999999999999998887 89999999888764

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.71  E-value=4.6e-17  Score=165.83  Aligned_cols=177  Identities=19%  Similarity=0.147  Sum_probs=149.3

Q ss_pred             CEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCccccc-CCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCcc
Q 036117          392 EYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIG-NLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLR  470 (641)
Q Consensus       392 ~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~-~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~  470 (641)
                      +.++++++.++ .+|..+.  +.++.|++++|.+++..+..+. .+++|++|++++|.+++..+..+..+.      +|+
T Consensus        21 ~~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~------~L~   91 (361)
T 2xot_A           21 NILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVP------NLR   91 (361)
T ss_dssp             TEEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCT------TCC
T ss_pred             CEEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCC------CCC
Confidence            68999999888 4565443  4689999999999977777777 899999999999999877777777777      899


Q ss_pred             EEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCccc---CCCCCCcEEeCC
Q 036117          471 NVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNAL---GIYPDLQYIDLG  547 (641)
Q Consensus       471 ~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~---~~l~~L~~L~Ls  547 (641)
                      +|++++|++++..+..+..+++|+.|++++|++.+..|..|..+++|+.|++++|++.+..+..+   ..+++|+.|+|+
T Consensus        92 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~  171 (361)
T 2xot_A           92 YLDLSSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLS  171 (361)
T ss_dssp             EEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECC
T ss_pred             EEECCCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECC
Confidence            99999999987777778899999999999999998888889999999999999999987555555   578999999999


Q ss_pred             CCcccccCChhhhcCCC--CCEEeCcCCcCcc
Q 036117          548 DNQLSGVLTSNWGKCTN--LSNFRISGNRIKG  577 (641)
Q Consensus       548 ~n~~~~~~~~~~~~l~~--L~~L~L~~n~l~~  577 (641)
                      +|++++..+..+..++.  ++.|++++|++..
T Consensus       172 ~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C  203 (361)
T 2xot_A          172 SNKLKKLPLTDLQKLPAWVKNGLYLHNNPLEC  203 (361)
T ss_dssp             SSCCCCCCHHHHHHSCHHHHTTEECCSSCEEC
T ss_pred             CCCCCccCHHHhhhccHhhcceEEecCCCccC
Confidence            99999777778888877  4889999999864

>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}

Probab=99.71  E-value=6.7e-17  Score=149.46  Aligned_cols=152  Identities=18%  Similarity=0.226  Sum_probs=101.7

Q ss_pred             CCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCC
Q 036117          436 LSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCT  515 (641)
Q Consensus       436 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~  515 (641)
                      +++|++|++++|.+. .+| .+..++      +|++|++++|.++  .+..+..+++|+.|++++|++.+..+..+..++
T Consensus        43 l~~L~~L~l~~n~i~-~l~-~l~~l~------~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~  112 (197)
T 4ezg_A           43 MNSLTYITLANINVT-DLT-GIEYAH------NIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLT  112 (197)
T ss_dssp             HHTCCEEEEESSCCS-CCT-TGGGCT------TCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCT
T ss_pred             cCCccEEeccCCCcc-ChH-HHhcCC------CCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCC
Confidence            344445555554444 333 233333      4555555555332  233556667777777777777766667777888


Q ss_pred             CCcEEECCCCcCccccCcccCCCCCCcEEeCCCCc-ccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeC
Q 036117          516 GLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQ-LSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDI  594 (641)
Q Consensus       516 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L  594 (641)
                      +|++|++++|++.+..+..++.+++|++|++++|+ ++ .++ .+..+++|++|++++|++++ ++ .+..+++|+.|++
T Consensus       113 ~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l  188 (197)
T 4ezg_A          113 SLTLLDISHSAHDDSILTKINTLPKVNSIDLSYNGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYA  188 (197)
T ss_dssp             TCCEEECCSSBCBGGGHHHHTTCSSCCEEECCSCTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEE
T ss_pred             CCCEEEecCCccCcHhHHHHhhCCCCCEEEccCCCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEe
Confidence            88888888888887777778888888888888887 55 444 57888888888888888875 33 6788888888888


Q ss_pred             CCCcCcc
Q 036117          595 FDNQLTG  601 (641)
Q Consensus       595 ~~n~l~~  601 (641)
                      ++|++.+
T Consensus       189 ~~N~i~~  195 (197)
T 4ezg_A          189 FSQTIGG  195 (197)
T ss_dssp             CBC----
T ss_pred             eCcccCC
Confidence            8888753

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.69  E-value=2.6e-18  Score=190.35  Aligned_cols=231  Identities=20%  Similarity=0.194  Sum_probs=126.1

Q ss_pred             cHHHHHHHHHHHhcCCCC---CCCCCCCCCCCCCCccccceeeCCCCCEEEEEcCCCCCccccCCcCCCCCCCCCEE---
Q 036117           20 AQKEAKALLNWKSSLVSS---SLPSWTAINSNSGPCNWNGIQCNEVGSISEINLANSGLDGTLDGFDFSAFPNLTAL---   93 (641)
Q Consensus        20 ~~~~~~~l~~~~~~~~~~---~~~~W~~~~~~~~~c~~~gv~c~~~~~v~~l~l~~~~~~~~~~~~~~~~l~~L~~L---   93 (641)
                      .+.++.++.++..++..+   .-..|....  ...+.|.++.+. .++++.+++..+.+... + ..+.....|+.+   
T Consensus       130 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~s-~~~~~~l~L~~n~~~~~-~-~~~l~~l~Ls~~~i~  204 (727)
T 4b8c_D          130 VDCTKQALMEMADTLTDSKTAKKQQPTGDS--TPSGTATNSAVS-TPLTPKIELFANGKDEA-N-QALLQHKKLSQYSID  204 (727)
T ss_dssp             --CCCHHHHHHHHHHHHHHTTC----------------------------------------------------------
T ss_pred             cccchhhhhhhhhhcccccCcccCCCcCCC--CccccCCCceec-CCccceEEeeCCCCCcc-h-hhHhhcCccCccccc
Confidence            345667788877655221   133554432  345678888776 47899999988887642 2 222222222222   


Q ss_pred             --ECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEecccc
Q 036117           94 --NLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANY  171 (641)
Q Consensus        94 --~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~  171 (641)
                        +++.|.+. ..+..+..++.|++|+|++|.+. .+|..+..+++|++|+|++|.++ .+|..|.++++|++|+|++|.
T Consensus       205 ~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~  281 (727)
T 4b8c_D          205 EDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNR  281 (727)
T ss_dssp             ------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSC
T ss_pred             Ccccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCc
Confidence              23333333 45777889999999999999998 67877889999999999999998 788899999999999999999


Q ss_pred             CCCCCCcccCCCCCCCEEEcCCCCCCCCchhhcCCCCCcEEEeeCCcCCCCCChhhhcCC-CCCcEEeccCCcccccCCc
Q 036117          172 LEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHL-ENLEYLNLTKNSFEGEIPR  250 (641)
Q Consensus       172 ~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l-~~L~~L~l~~n~~~~~~~~  250 (641)
                      ++. .+..|..+++|++|+|++|.++.+|..+..+++|++|++++|.+.+.++..+ ... .....+++++|.+++.+|.
T Consensus       282 l~~-lp~~~~~l~~L~~L~L~~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~-~~~~~~~~~l~l~~N~l~~~~p~  359 (727)
T 4b8c_D          282 LTS-LPAELGSCFQLKYFYFFDNMVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKIL-TEKSVTGLIFYLRDNRPEIPLPH  359 (727)
T ss_dssp             CSS-CCSSGGGGTTCSEEECCSSCCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHH-HHHHHHHHHHHHHHCCCCCCCCC
T ss_pred             CCc-cChhhcCCCCCCEEECCCCCCCccChhhhcCCCccEEeCCCCccCCCChHHH-hhcchhhhHHhhccCcccCcCcc
Confidence            984 4777899999999999999999999889999999999999999986665443 222 2223477888888877665


Q ss_pred             ccCCCCCCCEEEcCCC
Q 036117          251 EIKTFPKLRHLKLGQN  266 (641)
Q Consensus       251 ~l~~l~~L~~L~L~~~  266 (641)
                      .      |+.|+++.|
T Consensus       360 ~------l~~l~l~~n  369 (727)
T 4b8c_D          360 E------RRFIEINTD  369 (727)
T ss_dssp             C---------------
T ss_pred             c------cceeEeecc
Confidence            3      445555555

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.67  E-value=1.1e-16  Score=155.09  Aligned_cols=171  Identities=19%  Similarity=0.279  Sum_probs=141.7

Q ss_pred             CCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccccCC
Q 036117          411 NLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRG  490 (641)
Q Consensus       411 ~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~  490 (641)
                      .+.++..++++++.+.+ ++ .+..+++|++|++++|.++ .++ .+..+.      +|++|++++|++++. +. +..+
T Consensus        17 ~l~~l~~l~l~~~~i~~-~~-~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~------~L~~L~L~~N~i~~~-~~-l~~l   84 (263)
T 1xeu_A           17 GLANAVKQNLGKQSVTD-LV-SQKELSGVQNFNGDNSNIQ-SLA-GMQFFT------NLKELHLSHNQISDL-SP-LKDL   84 (263)
T ss_dssp             HHHHHHHHHHTCSCTTS-EE-CHHHHTTCSEEECTTSCCC-CCT-TGGGCT------TCCEEECCSSCCCCC-GG-GTTC
T ss_pred             HHHHHHHHHhcCCCccc-cc-chhhcCcCcEEECcCCCcc-cch-HHhhCC------CCCEEECCCCccCCC-hh-hccC
Confidence            34567788899999884 33 5778999999999999987 455 566666      899999999999854 44 8899


Q ss_pred             CCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeC
Q 036117          491 GNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRI  570 (641)
Q Consensus       491 ~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L  570 (641)
                      ++|+.|++++|++.+ +|. +.. ++|+.|++++|++.+.  ..++.+++|+.|++++|++++. + .+..+++|++|++
T Consensus        85 ~~L~~L~L~~N~l~~-l~~-~~~-~~L~~L~L~~N~l~~~--~~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L  157 (263)
T 1xeu_A           85 TKLEELSVNRNRLKN-LNG-IPS-ACLSRLFLDNNELRDT--DSLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDL  157 (263)
T ss_dssp             SSCCEEECCSSCCSC-CTT-CCC-SSCCEEECCSSCCSBS--GGGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEEC
T ss_pred             CCCCEEECCCCccCC-cCc-ccc-CcccEEEccCCccCCC--hhhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEEC
Confidence            999999999999985 343 233 8999999999999864  3588999999999999999875 3 6889999999999


Q ss_pred             cCCcCcccCCccccCCCCCCEEeCCCCcCccc
Q 036117          571 SGNRIKGGIPAELGNLTYLQNLDIFDNQLTGK  602 (641)
Q Consensus       571 ~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  602 (641)
                      ++|++++.  ..+..+++|+.|++++|++.+.
T Consensus       158 ~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~  187 (263)
T 1xeu_A          158 HGNEITNT--GGLTRLKKVNWIDLTGQKCVNE  187 (263)
T ss_dssp             TTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred             CCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence            99999866  6688999999999999999854

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.67  E-value=4.5e-16  Score=143.07  Aligned_cols=161  Identities=18%  Similarity=0.233  Sum_probs=128.9

Q ss_pred             ccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCcc-ccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCC
Q 036117          469 LRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPE-SLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLG  547 (641)
Q Consensus       469 L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~-~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls  547 (641)
                      -++++++++.++ .+|..+..  .++.|++++|++.+..+. .+..+++|++|++++|++++..|..|+.+++|++|+++
T Consensus        10 ~~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls   86 (192)
T 1w8a_A           10 GTTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLG   86 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred             CCEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECC
Confidence            478999999985 77776644  899999999999866654 48899999999999999998889999999999999999


Q ss_pred             CCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCc-cccCCCCCCEEeCcCCCCccc
Q 036117          548 DNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPA-QLFRSSFLIRLNLRRNQLSDK  626 (641)
Q Consensus       548 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~-~l~~~~~L~~l~l~~n~l~~~  626 (641)
                      +|++++..+..+..+++|++|++++|++++..|..+..+++|++|+|++|++.+..+. ++..  .++...+..+.....
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~--~l~~~~~~~~~~~C~  164 (192)
T 1w8a_A           87 ENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAE--WLRKKSLNGGAARCG  164 (192)
T ss_dssp             SCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHH--HHHHHCCSGGGCBBC
T ss_pred             CCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHH--HHHHcCCCCCCCCCC
Confidence            9999998888899999999999999999988899999999999999999999877652 2211  122223444444445


Q ss_pred             CcccccCC
Q 036117          627 IPAEIGKL  634 (641)
Q Consensus       627 ~p~~~~~l  634 (641)
                      .|..+...
T Consensus       165 ~P~~l~~~  172 (192)
T 1w8a_A          165 APSKVRDV  172 (192)
T ss_dssp             SSTTTTTS
T ss_pred             CChHHcCC
Confidence            55554443

>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}

Probab=99.67  E-value=5.8e-17  Score=156.99  Aligned_cols=122  Identities=20%  Similarity=0.298  Sum_probs=55.4

Q ss_pred             CCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEec
Q 036117           89 NLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIG  168 (641)
Q Consensus        89 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~  168 (641)
                      +++.++++++.+++. + .+..+++|++|++++|.++. ++ .+..+++|++|++++|.+++..+  +.++++|++|+++
T Consensus        20 ~l~~l~l~~~~i~~~-~-~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~   93 (263)
T 1xeu_A           20 NAVKQNLGKQSVTDL-V-SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN   93 (263)
T ss_dssp             HHHHHHHTCSCTTSE-E-CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred             HHHHHHhcCCCcccc-c-chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence            344444555554422 2 34455555555555555552 33 34555555555555555553322  4455555555555


Q ss_pred             cccCCCCCCcccCCCCCCCEEEcCCCCCCCCchhhcCCCCCcEEEeeCCcCC
Q 036117          169 ANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIM  220 (641)
Q Consensus       169 ~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~  220 (641)
                      +|.+++....  .. ++|++|++++|.+..++ .+..+++|++|++++|.+.
T Consensus        94 ~N~l~~l~~~--~~-~~L~~L~L~~N~l~~~~-~l~~l~~L~~L~Ls~N~i~  141 (263)
T 1xeu_A           94 RNRLKNLNGI--PS-ACLSRLFLDNNELRDTD-SLIHLKNLEILSIRNNKLK  141 (263)
T ss_dssp             SSCCSCCTTC--CC-SSCCEEECCSSCCSBSG-GGTTCTTCCEEECTTSCCC
T ss_pred             CCccCCcCcc--cc-CcccEEEccCCccCCCh-hhcCcccccEEECCCCcCC
Confidence            5554443221  11 44444444444443332 2334444444444444433

>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}

Probab=99.66  E-value=4.3e-17  Score=180.60  Aligned_cols=183  Identities=20%  Similarity=0.180  Sum_probs=120.5

Q ss_pred             cCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccccCCCCCceEeccCCcccCCC
Q 036117          428 SIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPI  507 (641)
Q Consensus       428 ~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~  507 (641)
                      ..+..+..++.|+.|++++|.+. .+|..+..+.      +|++|+|++|.++ .+|..+..+++|+.|++++|++. .+
T Consensus       215 ~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~------~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~l  285 (727)
T 4b8c_D          215 MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYD------FLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT-SL  285 (727)
T ss_dssp             -------CCCCCCEEECTTSCCS-CCCGGGGGCC------SCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS-SC
T ss_pred             cChhhhccCCCCcEEECCCCCCC-CCChhhcCCC------CCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC-cc
Confidence            45667788888999999998887 7777777776      8999999999888 88888889999999999999988 77


Q ss_pred             ccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCC-CCEEeCcCCcCcccCCccccCC
Q 036117          508 PESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTN-LSNFRISGNRIKGGIPAELGNL  586 (641)
Q Consensus       508 ~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~-L~~L~L~~n~l~~~~p~~l~~l  586 (641)
                      |..+.++++|++|+|++|.+. .+|..|+.+++|+.|+|++|++++.+|..+..+.. +..+++++|.+++.+|..    
T Consensus       286 p~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~----  360 (727)
T 4b8c_D          286 PAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE----  360 (727)
T ss_dssp             CSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC----
T ss_pred             ChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc----
Confidence            888999999999999999887 67878999999999999999999988888765432 234789999999888864    


Q ss_pred             CCCCEEeCCCC--------cCcccCCccccCCCCCCEEeCcCCCCccc
Q 036117          587 TYLQNLDIFDN--------QLTGKIPAQLFRSSFLIRLNLRRNQLSDK  626 (641)
Q Consensus       587 ~~L~~L~L~~n--------~l~~~ip~~l~~~~~L~~l~l~~n~l~~~  626 (641)
                        |+.|++++|        .+.+.++..+..+..+....+++|-+.+.
T Consensus       361 --l~~l~l~~n~~~~~~~~~l~~~~~~~~~~l~~~~~~~ls~Nil~~~  406 (727)
T 4b8c_D          361 --RRFIEINTDGEPQREYDSLQQSTEHLATDLAKRTFTVLSYNTLCQH  406 (727)
T ss_dssp             -------------------------------------------CCCGG
T ss_pred             --cceeEeecccccccccCCccccccchhhcccccceeeeeccccccc
Confidence              556667766        33333344445566667778888887643

>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7

Probab=99.65  E-value=8.7e-16  Score=141.14  Aligned_cols=170  Identities=15%  Similarity=0.224  Sum_probs=130.6

Q ss_pred             CEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCc-cccCCCCCceEeccCCcccCCCccccccCCCCc
Q 036117          440 VKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPP-GICRGGNLIYLTANVNKLVGPIPESLWNCTGLT  518 (641)
Q Consensus       440 ~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~-~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~  518 (641)
                      ++++++++.++ .+|..+..        ++++|++++|.+++..+. .+..++.|+.|++++|++.+..|..|.++++|+
T Consensus        11 ~~l~~s~~~l~-~ip~~~~~--------~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   81 (192)
T 1w8a_A           11 TTVDCTGRGLK-EIPRDIPL--------HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQ   81 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCCT--------TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred             CEEEcCCCCcC-cCccCCCC--------CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCC
Confidence            78999999885 67765432        699999999999866554 488899999999999999988888999999999


Q ss_pred             EEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCcc-ccCCCCCCEEeCCCC
Q 036117          519 RVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAE-LGNLTYLQNLDIFDN  597 (641)
Q Consensus       519 ~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~-l~~l~~L~~L~L~~n  597 (641)
                      +|++++|++.+..+..|+.+++|++|++++|++++..|..+..+++|++|++++|++.+..+-. +.  ..++...+..+
T Consensus        82 ~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~--~~l~~~~~~~~  159 (192)
T 1w8a_A           82 ELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFA--EWLRKKSLNGG  159 (192)
T ss_dssp             EEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHH--HHHHHHCCSGG
T ss_pred             EEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHH--HHHHHcCCCCC
Confidence            9999999999888888999999999999999999999999999999999999999998664421 11  11222334445


Q ss_pred             cCcccCCccccCCCCCCEEeCcCCCC
Q 036117          598 QLTGKIPAQLFRSSFLIRLNLRRNQL  623 (641)
Q Consensus       598 ~l~~~ip~~l~~~~~L~~l~l~~n~l  623 (641)
                      ......|..+..   ....++..+.+
T Consensus       160 ~~~C~~P~~l~~---~~l~~l~~~~~  182 (192)
T 1w8a_A          160 AARCGAPSKVRD---VQIKDLPHSEF  182 (192)
T ss_dssp             GCBBCSSTTTTT---SBGGGSCTTTC
T ss_pred             CCCCCCChHHcC---CChhhCcHhhc
Confidence            555455654433   23335555554

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.64  E-value=7.4e-16  Score=138.51  Aligned_cols=137  Identities=23%  Similarity=0.218  Sum_probs=103.7

Q ss_pred             CCCceEeccCCccc-CCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEe
Q 036117          491 GNLIYLTANVNKLV-GPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFR  569 (641)
Q Consensus       491 ~~L~~L~l~~n~~~-~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~  569 (641)
                      +.++.|++++|++. +.+|..+..+++|++|++++|.+.+.  ..++.+++|++|++++|++++.+|..+..+++|++|+
T Consensus        24 ~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~  101 (168)
T 2ell_A           24 AAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLN  101 (168)
T ss_dssp             TSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEE
T ss_pred             ccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEe
Confidence            56777777777776 56676677778888888888887755  6677788888888888888877777777788888888


Q ss_pred             CcCCcCcccC-CccccCCCCCCEEeCCCCcCcccCC---ccccCCCCCCEEeCcCCCCcccCccc
Q 036117          570 ISGNRIKGGI-PAELGNLTYLQNLDIFDNQLTGKIP---AQLFRSSFLIRLNLRRNQLSDKIPAE  630 (641)
Q Consensus       570 L~~n~l~~~~-p~~l~~l~~L~~L~L~~n~l~~~ip---~~l~~~~~L~~l~l~~n~l~~~~p~~  630 (641)
                      +++|.+++.. +..+..+++|++|++++|++++..+   ..+..+++|+.|++++|.+. .+|..
T Consensus       102 Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~  165 (168)
T 2ell_A          102 LSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS  165 (168)
T ss_dssp             CBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred             ccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence            8888887532 2678888888888888888874433   36777888888888888876 44543

>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A

Probab=99.63  E-value=5.3e-16  Score=139.48  Aligned_cols=135  Identities=19%  Similarity=0.216  Sum_probs=86.7

Q ss_pred             CccEEEccCCccc-ccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeC
Q 036117          468 FLRNVSFSYNNFS-GKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDL  546 (641)
Q Consensus       468 ~L~~L~ls~n~l~-~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L  546 (641)
                      ++++|++++|.++ +.+|..+..+++|+.|++++|.+.+.  ..+..+++|++|++++|++.+..|..+..+++|++|++
T Consensus        25 ~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L  102 (168)
T 2ell_A           25 AVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNL  102 (168)
T ss_dssp             SCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEEC
T ss_pred             cCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEec
Confidence            4555555555554 45555555566666666666665543  45666667777777777776656666566777777777


Q ss_pred             CCCcccccC-ChhhhcCCCCCEEeCcCCcCcccCC---ccccCCCCCCEEeCCCCcCcccCCc
Q 036117          547 GDNQLSGVL-TSNWGKCTNLSNFRISGNRIKGGIP---AELGNLTYLQNLDIFDNQLTGKIPA  605 (641)
Q Consensus       547 s~n~~~~~~-~~~~~~l~~L~~L~L~~n~l~~~~p---~~l~~l~~L~~L~L~~n~l~~~ip~  605 (641)
                      ++|++++.. +..+..+++|++|++++|++++..+   ..+..+++|++|++++|.+. .+|.
T Consensus       103 s~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~  164 (168)
T 2ell_A          103 SGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPD  164 (168)
T ss_dssp             BSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCS
T ss_pred             cCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hccc
Confidence            777776542 2566677777777777777764444   36677777777777777765 4554

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.62  E-value=9.7e-16  Score=134.70  Aligned_cols=127  Identities=24%  Similarity=0.240  Sum_probs=84.3

Q ss_pred             CCCceEeccCCccc-CCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEe
Q 036117          491 GNLIYLTANVNKLV-GPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFR  569 (641)
Q Consensus       491 ~~L~~L~l~~n~~~-~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~  569 (641)
                      ++++.|++++|.+. +.+|..+..+++|++|++++|.+.+.  ..++.+++|++|++++|.+++.+|..+..+++|++|+
T Consensus        17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~   94 (149)
T 2je0_A           17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHLN   94 (149)
T ss_dssp             GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEEE
T ss_pred             ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEEE
Confidence            44556666666655 45555566666777777777766654  5566677777777777777766666666677777777


Q ss_pred             CcCCcCccc-CCccccCCCCCCEEeCCCCcCcccCC---ccccCCCCCCEEeCc
Q 036117          570 ISGNRIKGG-IPAELGNLTYLQNLDIFDNQLTGKIP---AQLFRSSFLIRLNLR  619 (641)
Q Consensus       570 L~~n~l~~~-~p~~l~~l~~L~~L~L~~n~l~~~ip---~~l~~~~~L~~l~l~  619 (641)
                      +++|++++. .+..++.+++|++|++++|++++..+   ..+..+++|+.|+++
T Consensus        95 ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~  148 (149)
T 2je0_A           95 LSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGY  148 (149)
T ss_dssp             CTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTB
T ss_pred             CCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCC
Confidence            777777653 33667777777777777777764433   356667777777765

>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A

Probab=99.61  E-value=6.7e-16  Score=135.72  Aligned_cols=126  Identities=20%  Similarity=0.331  Sum_probs=113.9

Q ss_pred             CCCCcEEECCCCcCc-cccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEE
Q 036117          514 CTGLTRVRLEQNRLD-GDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNL  592 (641)
Q Consensus       514 ~~~L~~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L  592 (641)
                      .++++.|++++|.+. +.+|..++.+++|++|++++|.+++.  ..++.+++|++|++++|.+++.+|..++.+++|++|
T Consensus        16 ~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L   93 (149)
T 2je0_A           16 PSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTHL   93 (149)
T ss_dssp             GGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCEE
T ss_pred             CccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCEE
Confidence            367999999999998 78888889999999999999999976  678999999999999999998789888889999999


Q ss_pred             eCCCCcCccc-CCccccCCCCCCEEeCcCCCCcccCc---ccccCCCCCcCCC
Q 036117          593 DIFDNQLTGK-IPAQLFRSSFLIRLNLRRNQLSDKIP---AEIGKLSRLQYLD  641 (641)
Q Consensus       593 ~L~~n~l~~~-ip~~l~~~~~L~~l~l~~n~l~~~~p---~~~~~l~~L~~l~  641 (641)
                      ++++|.+++. .|..+..+++|++|++++|++++..+   ..++.+++|+.||
T Consensus        94 ~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~  146 (149)
T 2je0_A           94 NLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLD  146 (149)
T ss_dssp             ECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEET
T ss_pred             ECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCccccc
Confidence            9999999863 34788999999999999999998776   5789999999876

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.60  E-value=1.2e-15  Score=153.25  Aligned_cols=101  Identities=15%  Similarity=0.118  Sum_probs=47.0

Q ss_pred             CCCCCEEEcCCCcCCccCCcccCCCCcccEeeeecccccccCccccCCCCCCC-eeeccCccCCCCCCcCCCCCCCCCEE
Q 036117          255 FPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQ-RLNLKSAGLNSSIPKELGFCANLTFL  333 (641)
Q Consensus       255 l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~l~~~~~L~~L  333 (641)
                      +++|+++++++|.++......|..+++|+.+++.+| +....+.+|.++++|+ .+++.+ .+....+..|..|++|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            445555555555444333334445555555555444 3333344444555554 555444 3333333444444555555


Q ss_pred             EccCccccccCchhhhcCCCCCeE
Q 036117          334 ELSINNLTGSLPLSLASLRQISEL  357 (641)
Q Consensus       334 ~l~~n~l~~~~~~~l~~~~~L~~L  357 (641)
                      +++.|+++...+.+|..+++|+.+
T Consensus       303 ~l~~n~i~~I~~~aF~~~~~L~~l  326 (329)
T 3sb4_A          303 LATGDKITTLGDELFGNGVPSKLI  326 (329)
T ss_dssp             EECSSCCCEECTTTTCTTCCCCEE
T ss_pred             EeCCCccCccchhhhcCCcchhhh
Confidence            544444443333444444444444

>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}

Probab=99.59  E-value=1.5e-15  Score=152.55  Aligned_cols=100  Identities=12%  Similarity=0.105  Sum_probs=48.2

Q ss_pred             CCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCC-EEeCCCCcCcccCCccccCCCCCCEE
Q 036117          538 YPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQ-NLDIFDNQLTGKIPAQLFRSSFLIRL  616 (641)
Q Consensus       538 l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~-~L~L~~n~l~~~ip~~l~~~~~L~~l  616 (641)
                      +++|+.+++++|+++...+.+|.++++|+++++.+| +....+..|.++++|+ .+++.+ .++..-+..|..|++|+.+
T Consensus       225 ~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l  302 (329)
T 3sb4_A          225 MPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAIEFGAFMGCDNLRYV  302 (329)
T ss_dssp             CTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEECTTTTTTCTTEEEE
T ss_pred             cCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEEchhhhhCCccCCEE
Confidence            445555555555554444444555555555555554 4333334455555555 555554 3432222344445555555


Q ss_pred             eCcCCCCcccCcccccCCCCCcC
Q 036117          617 NLRRNQLSDKIPAEIGKLSRLQY  639 (641)
Q Consensus       617 ~l~~n~l~~~~p~~~~~l~~L~~  639 (641)
                      ++++|+++..-+..|.++++|+.
T Consensus       303 ~l~~n~i~~I~~~aF~~~~~L~~  325 (329)
T 3sb4_A          303 LATGDKITTLGDELFGNGVPSKL  325 (329)
T ss_dssp             EECSSCCCEECTTTTCTTCCCCE
T ss_pred             EeCCCccCccchhhhcCCcchhh
Confidence            55555555444445555555543

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.59  E-value=1.4e-14  Score=131.28  Aligned_cols=134  Identities=21%  Similarity=0.247  Sum_probs=99.3

Q ss_pred             CccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCC
Q 036117          468 FLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLG  547 (641)
Q Consensus       468 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls  547 (641)
                      ..+.++++++.++ .+|..+  .+.++.|++++|++.+..+..+..+++|++|++++|++.+..+..++.+++|++|+++
T Consensus         8 ~~~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~   84 (177)
T 2o6r_A            8 SGTEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLH   84 (177)
T ss_dssp             ETTEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECC
Confidence            3567888888876 455443  3578888888888876655667777888888888888876666667778888888888


Q ss_pred             CCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCC
Q 036117          548 DNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIP  604 (641)
Q Consensus       548 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip  604 (641)
                      +|++++..+..+..+++|++|++++|.+++..+..+..+++|++|++++|++.+..|
T Consensus        85 ~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           85 ENKLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CCCccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            888887766667777888888888888875555556777888888888888776554

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.58  E-value=1.7e-14  Score=132.48  Aligned_cols=128  Identities=23%  Similarity=0.264  Sum_probs=85.9

Q ss_pred             cEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCC
Q 036117          470 RNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDN  549 (641)
Q Consensus       470 ~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n  549 (641)
                      +.++++++.++ .+|..+.  +.++.|++++|++. .+|..+.++++|+.|++++|.+++..+..|..+++|++|++++|
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            35555555554 4444332  45666666666665 55566677777777777777777666666777777777777777


Q ss_pred             cccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcc
Q 036117          550 QLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTG  601 (641)
Q Consensus       550 ~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~  601 (641)
                      ++++..+..+..+++|++|+|++|+++...+..|..+++|+.|++++|++..
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            7777666677777777777777777775555557777777777777777654

>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}

Probab=99.57  E-value=1.8e-14  Score=130.52  Aligned_cols=132  Identities=22%  Similarity=0.279  Sum_probs=67.5

Q ss_pred             ceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCC
Q 036117          494 IYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGN  573 (641)
Q Consensus       494 ~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n  573 (641)
                      +.++++++++. .+|..+  .++|+.|++++|++.+..+..++.+++|++|++++|++++..+..+..+++|++|++++|
T Consensus        10 ~~l~~~~~~l~-~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N   86 (177)
T 2o6r_A           10 TEIRCNSKGLT-SVPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHEN   86 (177)
T ss_dssp             TEEECCSSCCS-SCCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEecCCCCc-cCCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCC
Confidence            44555555544 233222  245555555555555444444555555555555555555444444555555555555555


Q ss_pred             cCcccCCccccCCCCCCEEeCCCCcCcccCCccccCCCCCCEEeCcCCCCcccCc
Q 036117          574 RIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIP  628 (641)
Q Consensus       574 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~~~L~~l~l~~n~l~~~~p  628 (641)
                      ++++..+..+..+++|++|++++|.+++..+..+..+++|+.|++++|++.+..|
T Consensus        87 ~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~  141 (177)
T 2o6r_A           87 KLQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP  141 (177)
T ss_dssp             CCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCHH
T ss_pred             CccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCCCeeccCc
Confidence            5554444445555555555555555553222223445555555555555554433

>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}

Probab=99.56  E-value=2.6e-14  Score=131.15  Aligned_cols=128  Identities=22%  Similarity=0.288  Sum_probs=114.1

Q ss_pred             ceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCC
Q 036117          494 IYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGN  573 (641)
Q Consensus       494 ~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n  573 (641)
                      +.++++++++. .+|..+.  +++++|++++|.+. .+|..+..+++|+.|++++|++++..+..|.++++|++|+|++|
T Consensus        13 ~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N   88 (193)
T 2wfh_A           13 TVVRCSNKGLK-VLPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYN   88 (193)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             CEEEcCCCCCC-cCCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCC
Confidence            57899999887 6665543  68999999999998 67788999999999999999999998899999999999999999


Q ss_pred             cCcccCCccccCCCCCCEEeCCCCcCcccCCccccCCCCCCEEeCcCCCCcc
Q 036117          574 RIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSD  625 (641)
Q Consensus       574 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~~~L~~l~l~~n~l~~  625 (641)
                      ++++..|..|..+++|++|+|++|.+++..+..+..+++|+.|++++|++..
T Consensus        89 ~l~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~C  140 (193)
T 2wfh_A           89 RLRCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGANPLYC  140 (193)
T ss_dssp             CCCBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCEEC
T ss_pred             ccCEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCCCeec
Confidence            9998888899999999999999999995444567889999999999999864

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.54  E-value=4e-13  Score=137.72  Aligned_cols=266  Identities=11%  Similarity=0.109  Sum_probs=179.2

Q ss_pred             CCCCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEE
Q 036117           86 AFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLL  165 (641)
Q Consensus        86 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L  165 (641)
                      .+..++.+.+..+ ++..-..+|.++ +|+.+++..+ ++..-..+|.++ +|+.+.+.. .+....+.+|.++++|+.+
T Consensus       111 ~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l  185 (401)
T 4fdw_A          111 ILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA  185 (401)
T ss_dssp             ECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred             ecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence            3466777777543 443445566664 6777777665 544444556664 577777775 5555566677788888888


Q ss_pred             EeccccCCCCCCcccCCCCCCCEEEcCCCCCCCCc-hhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCcc
Q 036117          166 RIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFP-SFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSF  244 (641)
Q Consensus       166 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~-~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~  244 (641)
                      ++++|.+..+....|. +.+|+.+.+..+ +..++ ..|.++++|+.+++..+ +. .++...|.+ .+|+.+.+. +.+
T Consensus       186 ~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~~~-l~-~I~~~aF~~-~~L~~i~lp-~~i  259 (401)
T 4fdw_A          186 DLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIPEN-VS-TIGQEAFRE-SGITTVKLP-NGV  259 (401)
T ss_dssp             ECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECCTT-CC-EECTTTTTT-CCCSEEEEE-TTC
T ss_pred             ecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecCCC-cc-Ccccccccc-CCccEEEeC-CCc
Confidence            8877777777777776 477888887643 55554 35677778888888764 33 455555566 678888883 445


Q ss_pred             cccCCcccCCCCCCCEEEcCCCcCC-----ccCCcccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCccCCCC
Q 036117          245 EGEIPREIKTFPKLRHLKLGQNKLT-----GTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSS  319 (641)
Q Consensus       245 ~~~~~~~l~~l~~L~~L~L~~~~l~-----~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~  319 (641)
                      +......|..|++|+.+.+.++.+.     ......|..+++|+.+.+.+ .+......+|.++++|+.+.+..+ +...
T Consensus       260 ~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~~c~~L~~l~lp~~-l~~I  337 (401)
T 4fdw_A          260 TNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLGGNRKVTQLTIPAN-VTQI  337 (401)
T ss_dssp             CEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTTTCCSCCEEEECTT-CCEE
T ss_pred             cEEChhHhhCCCCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhcCCCCccEEEECcc-ccEE
Confidence            5455667788888888888776554     23445677788888888874 466566667888888888888544 5555


Q ss_pred             CCcCCCCCCCCCEEEccCccccccCchhhhcCC-CCCeEeCCccccc
Q 036117          320 IPKELGFCANLTFLELSINNLTGSLPLSLASLR-QISELGISNNQLS  365 (641)
Q Consensus       320 ~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~-~L~~L~l~~n~~~  365 (641)
                      ...+|..+ +|+.+++.+|......+..+..++ .++.+.+..+.+.
T Consensus       338 ~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~  383 (401)
T 4fdw_A          338 NFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE  383 (401)
T ss_dssp             CTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred             cHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence            56677788 888888888877765556666664 6777877766544

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.53  E-value=4e-14  Score=128.10  Aligned_cols=134  Identities=13%  Similarity=0.144  Sum_probs=98.0

Q ss_pred             ccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCC
Q 036117          487 ICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLS  566 (641)
Q Consensus       487 ~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~  566 (641)
                      +..+..|+.|++++|++. .+|......++|++|++++|.+.+.  ..++.+++|++|++++|++++..+..+..+++|+
T Consensus        15 ~~~~~~L~~L~l~~n~l~-~i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~   91 (176)
T 1a9n_A           15 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   91 (176)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             cCCcCCceEEEeeCCCCc-hhHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCC
Confidence            445666777777777666 3343222234788888888888764  5677788888888888888866555568888888


Q ss_pred             EEeCcCCcCcccCCc--cccCCCCCCEEeCCCCcCcccCCcc----ccCCCCCCEEeCcCCCCcc
Q 036117          567 NFRISGNRIKGGIPA--ELGNLTYLQNLDIFDNQLTGKIPAQ----LFRSSFLIRLNLRRNQLSD  625 (641)
Q Consensus       567 ~L~L~~n~l~~~~p~--~l~~l~~L~~L~L~~n~l~~~ip~~----l~~~~~L~~l~l~~n~l~~  625 (641)
                      +|++++|++. .+|.  .+..+++|+.|++++|++. .+|..    +..++.|+.|++++|....
T Consensus        92 ~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~~  154 (176)
T 1a9n_A           92 ELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLKE  154 (176)
T ss_dssp             EEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHHH
T ss_pred             EEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHHH
Confidence            8888888885 4555  6788888888888888887 56664    7778888888888887653

>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A

Probab=99.50  E-value=1.4e-12  Score=133.71  Aligned_cols=270  Identities=11%  Similarity=0.043  Sum_probs=147.6

Q ss_pred             CCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEeccccCCCCCCcccCCCCCCCEE
Q 036117          110 NATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDL  189 (641)
Q Consensus       110 ~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L  189 (641)
                      .+..++.+.+..+ ++..-..+|.++ +|+.+.+..+ ++.....+|.++ +|+.+.+.. .+..+....|.++++|+.+
T Consensus       111 ~~~~l~~i~ip~~-i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~~-~L~~i~lp~-~l~~I~~~aF~~c~~L~~l  185 (401)
T 4fdw_A          111 ILKGYNEIILPNS-VKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFNS-TVQEIVFPS-TLEQLKEDIFYYCYNLKKA  185 (401)
T ss_dssp             ECSSCSEEECCTT-CCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTTC-CCCEEECCT-TCCEECSSTTTTCTTCCEE
T ss_pred             ecCCccEEEECCc-cCEehHhhcccC-CccEEEeCCC-ccEECHHhcCCC-CceEEEeCC-CccEehHHHhhCcccCCee
Confidence            3466666666543 443344556664 6777777655 555555666664 577777775 5666667777777777777


Q ss_pred             EcCCCCCCCCchhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCcccccCCcccCCCCCCCEEEcCCCcCC
Q 036117          190 WLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLT  269 (641)
Q Consensus       190 ~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~  269 (641)
                      ++..|.+..++.....+.+|+.+.+..+ +. .++...|.++++|+.+++..+ ++......|.. .+|+.+.+.. .+.
T Consensus       186 ~l~~n~l~~I~~~aF~~~~L~~l~lp~~-l~-~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp~-~i~  260 (401)
T 4fdw_A          186 DLSKTKITKLPASTFVYAGIEEVLLPVT-LK-EIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLPN-GVT  260 (401)
T ss_dssp             ECTTSCCSEECTTTTTTCCCSEEECCTT-CC-EECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEET-TCC
T ss_pred             ecCCCcceEechhhEeecccCEEEeCCc-hh-eehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeCC-Ccc
Confidence            7777777777665555677777777643 33 555556667777777777653 33333444544 4666666632 344


Q ss_pred             ccCCcccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCccCCCCCCcCCCCCCCCCEEEccCccccccCchhhh
Q 036117          270 GTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLA  349 (641)
Q Consensus       270 ~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~  349 (641)
                      ......|..+++|+.+.+.++.+...                   .........|..|++|+.+++.+ .+......+|.
T Consensus       261 ~I~~~aF~~c~~L~~l~l~~~~~~~~-------------------~~~~I~~~aF~~c~~L~~l~l~~-~i~~I~~~aF~  320 (401)
T 4fdw_A          261 NIASRAFYYCPELAEVTTYGSTFNDD-------------------PEAMIHPYCLEGCPKLARFEIPE-SIRILGQGLLG  320 (401)
T ss_dssp             EECTTTTTTCTTCCEEEEESSCCCCC-------------------TTCEECTTTTTTCTTCCEECCCT-TCCEECTTTTT
T ss_pred             EEChhHhhCCCCCCEEEeCCccccCC-------------------cccEECHHHhhCCccCCeEEeCC-ceEEEhhhhhc
Confidence            33344555666666666655543300                   00012223344444555555442 23333334444


Q ss_pred             cCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCCchhhhhCCC-CCCeEecccCc
Q 036117          350 SLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLT-NLFDLQLANNF  424 (641)
Q Consensus       350 ~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~-~L~~L~l~~n~  424 (641)
                      .|++|+.+.+..+ ++.+             -...|..+ +|+.+++.+|.........|.+++ .++.+.+..+.
T Consensus       321 ~c~~L~~l~lp~~-l~~I-------------~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~  381 (401)
T 4fdw_A          321 GNRKVTQLTIPAN-VTQI-------------NFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES  381 (401)
T ss_dssp             TCCSCCEEEECTT-CCEE-------------CTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred             CCCCccEEEECcc-ccEE-------------cHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence            5555555554322 1111             12344455 566666666655544444455553 55566665544

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.48  E-value=1.8e-16  Score=146.73  Aligned_cols=150  Identities=21%  Similarity=0.214  Sum_probs=115.0

Q ss_pred             CccEEEccCCcccccCCc------cccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCC
Q 036117          468 FLRNVSFSYNNFSGKLPP------GICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDL  541 (641)
Q Consensus       468 ~L~~L~ls~n~l~~~~~~------~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L  541 (641)
                      .++.++++.+.+++.+|.      .+..+++|+.|++++|++.+ +| .+.++++|++|++++|.+. .+|..+..+++|
T Consensus        19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L   95 (198)
T 1ds9_A           19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL   95 (198)
T ss_dssp             CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC
T ss_pred             cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC
Confidence            577777777777777665      78888888888888888875 56 7788888888888888887 456666667888


Q ss_pred             cEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCC-ccccCCCCCCEEeCCCCcCcccCCcc----------ccCC
Q 036117          542 QYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIP-AELGNLTYLQNLDIFDNQLTGKIPAQ----------LFRS  610 (641)
Q Consensus       542 ~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~ip~~----------l~~~  610 (641)
                      ++|++++|++++. | .+..+++|++|++++|++++..+ ..+..+++|++|++++|++.+.+|..          +..+
T Consensus        96 ~~L~L~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l  173 (198)
T 1ds9_A           96 EELWISYNQIASL-S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRL  173 (198)
T ss_dssp             SEEEEEEEECCCH-H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHC
T ss_pred             CEEECcCCcCCcC-C-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhC
Confidence            8888888888863 3 57788888888888888874322 46788888888888888887666543          6677


Q ss_pred             CCCCEEeCcCCCCc
Q 036117          611 SFLIRLNLRRNQLS  624 (641)
Q Consensus       611 ~~L~~l~l~~n~l~  624 (641)
                      +.|+.||  +|+++
T Consensus       174 ~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          174 PNLKKLD--GMPVD  185 (198)
T ss_dssp             SSCSEEC--CGGGT
T ss_pred             CCcEEEC--CcccC
Confidence            8888776  56554

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.48  E-value=2.5e-12  Score=132.44  Aligned_cols=333  Identities=14%  Similarity=0.080  Sum_probs=162.0

Q ss_pred             ccccCCcccCCCCCCCEEEcCCCcCCccCCcccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCccCCCCCCcC
Q 036117          244 FEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKE  323 (641)
Q Consensus       244 ~~~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~  323 (641)
                      ++.....+|.+|.+|+++.+..+ ++......|.++++|+.+++.++ +.......|.++.+|+.+.+..+ +.......
T Consensus        59 VtsIg~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~a  135 (394)
T 4fs7_A           59 VVSIGYAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEA  135 (394)
T ss_dssp             EEEECTTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTT
T ss_pred             EeEhHHHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeeccee
Confidence            44445566777788888887643 54344455777777777777544 33334445666666666554332 21222223


Q ss_pred             CCCCCCCCEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcC
Q 036117          324 LGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSG  403 (641)
Q Consensus       324 l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~  403 (641)
                      +..+..+.......  .......                                     .+..+++|+.+.+.++. ..
T Consensus       136 F~~~~~~~~~~~~~--~~~i~~~-------------------------------------aF~~c~~L~~i~l~~~~-~~  175 (394)
T 4fs7_A          136 FKGCDFKEITIPEG--VTVIGDE-------------------------------------AFATCESLEYVSLPDSM-ET  175 (394)
T ss_dssp             TTTCCCSEEECCTT--CCEECTT-------------------------------------TTTTCTTCCEEECCTTC-CE
T ss_pred             eecccccccccCcc--ccccchh-------------------------------------hhcccCCCcEEecCCcc-ce
Confidence            33332221111111  1111122                                     34444555555554332 11


Q ss_pred             CchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccC
Q 036117          404 PIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKL  483 (641)
Q Consensus       404 ~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~  483 (641)
                      ....+|.++.+|+.+++..+ +.......|.++..|+.+.+..+...  +.+......      .|+.+.+.... +..-
T Consensus       176 I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~--i~~~~~~~~------~l~~i~ip~~~-~~i~  245 (394)
T 4fs7_A          176 LHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYY--LGDFALSKT------GVKNIIIPDSF-TELG  245 (394)
T ss_dssp             ECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCE--ECTTTTTTC------CCCEEEECTTC-CEEC
T ss_pred             eccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceE--eehhhcccC------CCceEEECCCc-eecc
Confidence            23334555555555555443 22222334455555555544443221  011111111      45555443321 1112


Q ss_pred             CccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCC
Q 036117          484 PPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCT  563 (641)
Q Consensus       484 ~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~  563 (641)
                      ...+..+..++.+.+..+... .....+..+..++.+......+.   ...|..+.+|+.+.+.++ +......+|.+++
T Consensus       246 ~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~  320 (394)
T 4fs7_A          246 KSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYGSVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCT  320 (394)
T ss_dssp             SSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEECSSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCT
T ss_pred             cccccccccceeEEcCCCcce-eeccccccccccceeccCceeec---cccccccccccccccccc-cceechhhhcCCC
Confidence            233445555666655544322 22344556666666665544322   234555666666666544 4444455666666


Q ss_pred             CCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccC-CccccCCCCCCEEeCcCCCCcccCcccccCCCCCcC
Q 036117          564 NLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKI-PAQLFRSSFLIRLNLRRNQLSDKIPAEIGKLSRLQY  639 (641)
Q Consensus       564 ~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i-p~~l~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~  639 (641)
                      +|+.+++..+ ++..-..+|.++++|+.+++..+ ++ .| ...+..|++|+.+++..+-  ..+...|.++++|+.
T Consensus       321 ~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~-~I~~~aF~~C~~L~~i~lp~~~--~~~~~~F~~c~~L~~  392 (394)
T 4fs7_A          321 SLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LR-KIGANAFQGCINLKKVELPKRL--EQYRYDFEDTTKFKW  392 (394)
T ss_dssp             TCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CC-EECTTTBTTCTTCCEEEEEGGG--GGGGGGBCTTCEEEE
T ss_pred             CCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-cc-EehHHHhhCCCCCCEEEECCCC--EEhhheecCCCCCcE
Confidence            7777776543 44344456666777777777655 44 33 3455566677777765442  133455666666553

>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}

Probab=99.48  E-value=1.9e-12  Score=133.43  Aligned_cols=62  Identities=10%  Similarity=-0.006  Sum_probs=31.6

Q ss_pred             chhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEec
Q 036117          105 PAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIG  168 (641)
Q Consensus       105 ~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~  168 (641)
                      ..+|.+|++|+.+++..+ ++..-..+|.+|++|+.+++..+ ++.....+|.++++|+.+.+.
T Consensus        64 ~~AF~~c~~L~~i~lp~~-i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p  125 (394)
T 4fs7_A           64 YAAFQGCRKVTEIKIPST-VREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLP  125 (394)
T ss_dssp             TTTTTTCTTEEEEECCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCC
T ss_pred             HHHhhCCCCceEEEeCCC-ccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhccc
Confidence            345666666666666532 43333345556666666666433 333334455555555554443

>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4

Probab=99.48  E-value=6.1e-14  Score=126.88  Aligned_cols=127  Identities=20%  Similarity=0.193  Sum_probs=108.5

Q ss_pred             ccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCC
Q 036117          510 SLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYL  589 (641)
Q Consensus       510 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  589 (641)
                      .+.++++|+.|++++|++.. ++......++|+.|++++|.+++.  ..+..+++|++|++++|.+++..+..+..+++|
T Consensus        14 ~~~~~~~L~~L~l~~n~l~~-i~~~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L   90 (176)
T 1a9n_A           14 QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   90 (176)
T ss_dssp             EEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             hcCCcCCceEEEeeCCCCch-hHHhhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence            46778999999999999985 454334445999999999999976  578999999999999999996655656999999


Q ss_pred             CEEeCCCCcCcccCCc--cccCCCCCCEEeCcCCCCcccCccc----ccCCCCCcCCC
Q 036117          590 QNLDIFDNQLTGKIPA--QLFRSSFLIRLNLRRNQLSDKIPAE----IGKLSRLQYLD  641 (641)
Q Consensus       590 ~~L~L~~n~l~~~ip~--~l~~~~~L~~l~l~~n~l~~~~p~~----~~~l~~L~~l~  641 (641)
                      ++|++++|.+. .+|.  .+..+++|+.|++++|+++ .+|..    ++.+++|+.||
T Consensus        91 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld  146 (176)
T 1a9n_A           91 TELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLD  146 (176)
T ss_dssp             CEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEET
T ss_pred             CEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeC
Confidence            99999999996 6776  7889999999999999998 56664    88999998876

>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A

Probab=99.45  E-value=7.2e-16  Score=142.64  Aligned_cols=153  Identities=17%  Similarity=0.252  Sum_probs=88.3

Q ss_pred             CCCCCCEEEccCCcCcccCCc------chhcCCCCCCCCCccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCc
Q 036117          435 NLSSLVKLSLSSNQLTGTLPP------EIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIP  508 (641)
Q Consensus       435 ~l~~L~~L~ls~n~l~~~~~~------~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~  508 (641)
                      ..+.++.++++++.+.+.+|.      .+..+.      +|++|++++|.+++ +| .+..+++|+.|++++|++. .+|
T Consensus        16 ~~~~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~------~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~   86 (198)
T 1ds9_A           16 ERKSVVATEAEKVELHGMIPPIEKMDATLSTLK------ACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIE   86 (198)
T ss_dssp             HTTCCCCTTCSEEECCBCCTTCCCCHHHHHHTT------TCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCS
T ss_pred             hcccccCcchheeEeccccCcHhhhhHHHhcCC------CCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-ccc
Confidence            344555555555555555554      555555      56666666666654 44 5556666666666666665 455


Q ss_pred             cccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCC-hhhhcCCCCCEEeCcCCcCcccCCcc-----
Q 036117          509 ESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLT-SNWGKCTNLSNFRISGNRIKGGIPAE-----  582 (641)
Q Consensus       509 ~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~-~~~~~l~~L~~L~L~~n~l~~~~p~~-----  582 (641)
                      ..+..+++|++|++++|++.+. + .++.+++|+.|++++|++++..+ ..+..+++|++|++++|++.+..|..     
T Consensus        87 ~~~~~~~~L~~L~L~~N~l~~l-~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~  164 (198)
T 1ds9_A           87 NLDAVADTLEELWISYNQIASL-S-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSE  164 (198)
T ss_dssp             SHHHHHHHCSEEEEEEEECCCH-H-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHH
T ss_pred             chhhcCCcCCEEECcCCcCCcC-C-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHH
Confidence            5555556666666666666542 2 35556666666666666654322 34556666666666666665544432     


Q ss_pred             -----ccCCCCCCEEeCCCCcCc
Q 036117          583 -----LGNLTYLQNLDIFDNQLT  600 (641)
Q Consensus       583 -----l~~l~~L~~L~L~~n~l~  600 (641)
                           +..+++|+.||  ++.++
T Consensus       165 ~~~~~~~~l~~L~~Ld--~~~i~  185 (198)
T 1ds9_A          165 YRIEVVKRLPNLKKLD--GMPVD  185 (198)
T ss_dssp             HHHHHHHHCSSCSEEC--CGGGT
T ss_pred             HHHHHHHhCCCcEEEC--CcccC
Confidence                 55566666665  44443

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.40  E-value=1.7e-12  Score=116.42  Aligned_cols=108  Identities=19%  Similarity=0.230  Sum_probs=89.5

Q ss_pred             CceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcC
Q 036117          493 LIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISG  572 (641)
Q Consensus       493 L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~  572 (641)
                      .+.+++++|++. .+|..+.  ++|++|++++|++.+..+..|+.+++|++|+|++|++++..+..+..+++|++|+|++
T Consensus        11 ~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~   87 (170)
T 3g39_A           11 GTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLND   87 (170)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred             CCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCC
Confidence            468888888887 4665543  7888999999999888888888899999999999998877777788888999999999


Q ss_pred             CcCcccCCccccCCCCCCEEeCCCCcCcccC
Q 036117          573 NRIKGGIPAELGNLTYLQNLDIFDNQLTGKI  603 (641)
Q Consensus       573 n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i  603 (641)
                      |++++..+..|..+++|++|+|++|++.+..
T Consensus        88 N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c  118 (170)
T 3g39_A           88 NQLKSIPRGAFDNLKSLTHIWLLNNPWDCAC  118 (170)
T ss_dssp             SCCCCCCTTTTTTCTTCCEEECCSSCBCTTB
T ss_pred             CccCEeCHHHhcCCCCCCEEEeCCCCCCCCc
Confidence            9988766667888899999999999887543

>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D

Probab=99.39  E-value=2.2e-12  Score=115.65  Aligned_cols=108  Identities=21%  Similarity=0.225  Sum_probs=90.2

Q ss_pred             CccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCC
Q 036117          468 FLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLG  547 (641)
Q Consensus       468 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls  547 (641)
                      ..+.+++++|.++ .+|..+.  +.++.|++++|++.+..|..|.++++|++|++++|++.+..+..|..+++|++|+|+
T Consensus        10 ~~~~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~   86 (170)
T 3g39_A           10 SGTTVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN   86 (170)
T ss_dssp             ETTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred             CCCEEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence            4678889988887 5676553  788899999999988878888888999999999999887777778888999999999


Q ss_pred             CCcccccCChhhhcCCCCCEEeCcCCcCccc
Q 036117          548 DNQLSGVLTSNWGKCTNLSNFRISGNRIKGG  578 (641)
Q Consensus       548 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~  578 (641)
                      +|++++..+..+..+++|++|+|++|++.+.
T Consensus        87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~  117 (170)
T 3g39_A           87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWDCA  117 (170)
T ss_dssp             SSCCCCCCTTTTTTCTTCCEEECCSSCBCTT
T ss_pred             CCccCEeCHHHhcCCCCCCEEEeCCCCCCCC
Confidence            9998877777788888999999999988744

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.36  E-value=4.4e-12  Score=114.04  Aligned_cols=105  Identities=19%  Similarity=0.302  Sum_probs=87.3

Q ss_pred             ceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCC
Q 036117          494 IYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGN  573 (641)
Q Consensus       494 ~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n  573 (641)
                      +.++++++++. .+|..+.  ++|++|++++|++.+..+..|+.+++|++|+|++|++++..+..+..+++|++|+|++|
T Consensus        15 ~~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N   91 (174)
T 2r9u_A           15 TLVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDN   91 (174)
T ss_dssp             SEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred             cEEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCC
Confidence            67888888885 6676554  78899999999998888888888999999999999988776667788889999999999


Q ss_pred             cCcccCCccccCCCCCCEEeCCCCcCcc
Q 036117          574 RIKGGIPAELGNLTYLQNLDIFDNQLTG  601 (641)
Q Consensus       574 ~l~~~~p~~l~~l~~L~~L~L~~n~l~~  601 (641)
                      ++++..+..|..+++|++|+|++|++..
T Consensus        92 ~l~~l~~~~~~~l~~L~~L~L~~N~~~c  119 (174)
T 2r9u_A           92 HLKSIPRGAFDNLKSLTHIYLYNNPWDC  119 (174)
T ss_dssp             CCCCCCTTTTTTCTTCSEEECCSSCBCT
T ss_pred             ccceeCHHHhccccCCCEEEeCCCCccc
Confidence            9886665668888999999999998874

>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}

Probab=99.35  E-value=8.7e-12  Score=112.09  Aligned_cols=86  Identities=26%  Similarity=0.256  Sum_probs=40.5

Q ss_pred             CCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEeccccCCCCCCcccCCCCCCCEEEc
Q 036117          112 TKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWL  191 (641)
Q Consensus       112 ~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l  191 (641)
                      ++|++|++++|.+++..|..|+.+++|++|++++|++++..+..|.++++|++|++++|.+..+.+..|..+++|++|++
T Consensus        33 ~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L  112 (174)
T 2r9u_A           33 TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNHLKSIPRGAFDNLKSLTHIYL  112 (174)
T ss_dssp             TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEEC
T ss_pred             CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCccceeCHHHhccccCCCEEEe
Confidence            34444444444444444444444444555555544444333333444444444444444444444444444455555555


Q ss_pred             CCCCCC
Q 036117          192 DYNLLE  197 (641)
Q Consensus       192 ~~~~~~  197 (641)
                      ++|.+.
T Consensus       113 ~~N~~~  118 (174)
T 2r9u_A          113 YNNPWD  118 (174)
T ss_dssp             CSSCBC
T ss_pred             CCCCcc
Confidence            555443

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.29  E-value=1.4e-13  Score=139.65  Aligned_cols=189  Identities=16%  Similarity=0.098  Sum_probs=120.7

Q ss_pred             CCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccc-cCCCCCceEeccCCcccCCCcccc---
Q 036117          436 LSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGI-CRGGNLIYLTANVNKLVGPIPESL---  511 (641)
Q Consensus       436 l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~-~~~~~L~~L~l~~n~~~~~~~~~l---  511 (641)
                      .+.|++|++++|.++......+...-. ...++|++|++++|.+++.....+ ..+++|+.|++++|.+.......+   
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~-~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~  149 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLG-SGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDL  149 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHS-SCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHh-hCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHH
Confidence            467899999999987543333332200 011279999999998865433322 234578888998888865433333   


Q ss_pred             --ccCCCCcEEECCCCcCccc----cCcccCCCCCCcEEeCCCCcccccC----ChhhhcCCCCCEEeCcCCcCccc---
Q 036117          512 --WNCTGLTRVRLEQNRLDGD----ITNALGIYPDLQYIDLGDNQLSGVL----TSNWGKCTNLSNFRISGNRIKGG---  578 (641)
Q Consensus       512 --~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~~~~~~----~~~~~~l~~L~~L~L~~n~l~~~---  578 (641)
                        ...++|++|++++|.++..    ++..+...++|++|+|++|.+++..    +..+...++|++|+|++|.+++.   
T Consensus       150 L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~  229 (372)
T 3un9_A          150 LLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAAL  229 (372)
T ss_dssp             HHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHH
T ss_pred             HHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHH
Confidence              2467888888888888642    3444567788888888888887543    45566777888888888888643   


Q ss_pred             -CCccccCCCCCCEEeCCCCcCcccCCccccCC---C--CCCEEe--CcCCCCcc
Q 036117          579 -IPAELGNLTYLQNLDIFDNQLTGKIPAQLFRS---S--FLIRLN--LRRNQLSD  625 (641)
Q Consensus       579 -~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~---~--~L~~l~--l~~n~l~~  625 (641)
                       ++..+...++|++|+|++|.+++.-...+..+   .  .++.+.  +..|.++.
T Consensus       230 ~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~  284 (372)
T 3un9_A          230 ALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSE  284 (372)
T ss_dssp             HHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHH
T ss_pred             HHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCH
Confidence             33445566888888888888875544444332   1  166666  66666543

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.28  E-value=1.3e-09  Score=112.05  Aligned_cols=132  Identities=14%  Similarity=0.194  Sum_probs=83.0

Q ss_pred             ccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCC
Q 036117          485 PGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTN  564 (641)
Q Consensus       485 ~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~  564 (641)
                      ..+.++..|+.+.+..+... ....+|.+|+.|+.+.+. +.+.......|..+.+|+.++|..+ ++.....+|.+|.+
T Consensus       259 ~aF~~c~~L~~i~lp~~~~~-I~~~aF~~c~~L~~i~l~-~~i~~I~~~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~  335 (394)
T 4gt6_A          259 HAFDSCAYLASVKMPDSVVS-IGTGAFMNCPALQDIEFS-SRITELPESVFAGCISLKSIDIPEG-ITQILDDAFAGCEQ  335 (394)
T ss_dssp             TTTTTCSSCCEEECCTTCCE-ECTTTTTTCTTCCEEECC-TTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTT
T ss_pred             ceeeecccccEEecccccce-ecCcccccccccccccCC-CcccccCceeecCCCCcCEEEeCCc-ccEehHhHhhCCCC
Confidence            34566777777777554332 334567778888888875 3455445567778888888888754 55556677888888


Q ss_pred             CCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCccccCCCCCCEEeCcCCCC
Q 036117          565 LSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQL  623 (641)
Q Consensus       565 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~~~L~~l~l~~n~l  623 (641)
                      |+.+.+..+ ++..-..+|.++++|+.+++.++....   ..+..+..|+.+.+..+.+
T Consensus       336 L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~L~~i~i~~~~~  390 (394)
T 4gt6_A          336 LERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSGLQNLPVAPGSI  390 (394)
T ss_dssp             CCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCCC----------
T ss_pred             CCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCCCCEEEeCCCCE
Confidence            888888654 554455678888888888888876542   3456677788887776654

>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}

Probab=99.26  E-value=2.3e-13  Score=138.13  Aligned_cols=184  Identities=17%  Similarity=0.127  Sum_probs=129.5

Q ss_pred             CCCCCeEecccCcCCccCccc----cc-CCCCCCEEEccCCcCcccCCcchh-cCCCCCCCCCccEEEccCCcccccCCc
Q 036117          412 LTNLFDLQLANNFFNGSIPST----IG-NLSSLVKLSLSSNQLTGTLPPEIG-NSKSDFGPRFLRNVSFSYNNFSGKLPP  485 (641)
Q Consensus       412 l~~L~~L~l~~n~l~~~~~~~----l~-~l~~L~~L~ls~n~l~~~~~~~~~-~~~~~~~~~~L~~L~ls~n~l~~~~~~  485 (641)
                      .+.|+.|++++|.++......    +. ..++|++|++++|.+++.....+. .+.      +|++|++++|.+++....
T Consensus        71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~------~L~~L~Ls~n~l~~~~~~  144 (372)
T 3un9_A           71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFL------RARKLGLQLNSLGPEACK  144 (372)
T ss_dssp             HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHH------TEEEEECCSSCCCHHHHH
T ss_pred             HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHH------hccHhhcCCCCCCHHHHH
Confidence            468999999999987543332    32 236999999999998754333332 223      699999999998764433


Q ss_pred             cc-----cCCCCCceEeccCCcccC----CCccccccCCCCcEEECCCCcCccc----cCcccCCCCCCcEEeCCCCccc
Q 036117          486 GI-----CRGGNLIYLTANVNKLVG----PIPESLWNCTGLTRVRLEQNRLDGD----ITNALGIYPDLQYIDLGDNQLS  552 (641)
Q Consensus       486 ~~-----~~~~~L~~L~l~~n~~~~----~~~~~l~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~~~  552 (641)
                      .+     ...+.|+.|++++|.+..    .++..+..+++|++|++++|.+...    ++..+...+.|++|+|++|.++
T Consensus       145 ~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~  224 (372)
T 3un9_A          145 DLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAG  224 (372)
T ss_dssp             HHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCC
T ss_pred             HHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCC
Confidence            33     246789999999999865    2344567789999999999999753    3556677889999999999998


Q ss_pred             cc----CChhhhcCCCCCEEeCcCCcCcccCCccccCC---CC--CCEEe--CCCCcCcc
Q 036117          553 GV----LTSNWGKCTNLSNFRISGNRIKGGIPAELGNL---TY--LQNLD--IFDNQLTG  601 (641)
Q Consensus       553 ~~----~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l---~~--L~~L~--L~~n~l~~  601 (641)
                      +.    ++..+...++|++|+|++|.+++.....+..+   ..  ++.+.  +..+.+..
T Consensus       225 ~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~g~~~L~~~~~~~~~~L~~l~~ll~~~~~~~  284 (372)
T 3un9_A          225 DTAALALARAAREHPSLELLHLYFNELSSEGRQVLRDLGGAAEGGARVVVSLTEGTAVSE  284 (372)
T ss_dssp             HHHHHHHHHHHHHCSSCCEEECTTSSCCHHHHHHHHHCC------CEEECCCC----CHH
T ss_pred             HHHHHHHHHHHHhCCCCCEEeccCCCCCHHHHHHHHHHhcCCCccchhhHhhhcCCccCH
Confidence            64    33455667999999999999976544444333   21  67776  67776653

>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}

Probab=99.25  E-value=1e-09  Score=112.83  Aligned_cols=157  Identities=10%  Similarity=0.143  Sum_probs=83.4

Q ss_pred             CCCCCcccCCCC-CCCEEEcCCCCCCCCc-hhhcCCCCCcEEEeeCCc---CCCCCChhhhcCCCCCcEEeccCCccccc
Q 036117          173 EDPDPVKFKGMA-SLTDLWLDYNLLEKFP-SFIAECSKLMFLDLSDNL---IMGHIPIEQLTHLENLEYLNLTKNSFEGE  247 (641)
Q Consensus       173 ~~~~~~~l~~l~-~L~~L~l~~~~~~~l~-~~l~~~~~L~~L~l~~~~---~~~~~~~~~l~~l~~L~~L~l~~n~~~~~  247 (641)
                      +.+...+|.++. .|+.+.+..+ ++.+. ..|.+|++|+.+.+..+.   ++ .+....|..+..|+.+.+..+ ++..
T Consensus        52 t~Ig~~aF~~~~~~L~sI~iP~s-vt~Ig~~AF~~C~~L~~i~~~~n~p~~l~-~Ig~~aF~~c~~L~~i~~~~~-~~~I  128 (394)
T 4gt6_A           52 SKIGDRVFCNYKYVLTSVQIPDT-VTEIGSNAFYNCTSLKRVTIQDNKPSCVK-KIGRQAFMFCSELTDIPILDS-VTEI  128 (394)
T ss_dssp             EEECTTTTTTCCSCCCEEEECTT-CCEECTTTTTTCTTCCEEEEGGGCCCCCC-EECTTTTTTCTTCCBCGGGTT-CSEE
T ss_pred             eEcCHhhccCCCCcCEEEEECCC-eeEEhHHHhhCCccCceEeecCCCCCeee-EechhhchhcccceeeccCCc-ccee
Confidence            344556777774 5888887653 44443 356777888888776653   32 445555667777777666443 3334


Q ss_pred             CCcccCCCCCCCEEEcCCCcCCccCCcccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCccCCCCCCcCCCCC
Q 036117          248 IPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFC  327 (641)
Q Consensus       248 ~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~  327 (641)
                      ....|..+.+|+.+.+... +.......+..+..|+.+.+.++ +......+|.+ ..|+.+.+..+-. ......+..+
T Consensus       129 ~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~l~~i~ip~~~~-~i~~~af~~c  204 (394)
T 4gt6_A          129 DSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TALTQIHIPAKVT-RIGTNAFSEC  204 (394)
T ss_dssp             CTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CCCSEEEECTTCC-EECTTTTTTC
T ss_pred             hhhhhhhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cceeEEEECCccc-ccccchhhhc
Confidence            4455667777777777543 22233344556666666666543 22222223322 3455555543211 1222334444


Q ss_pred             CCCCEEEcc
Q 036117          328 ANLTFLELS  336 (641)
Q Consensus       328 ~~L~~L~l~  336 (641)
                      ..++.....
T Consensus       205 ~~l~~~~~~  213 (394)
T 4gt6_A          205 FALSTITSD  213 (394)
T ss_dssp             TTCCEEEEC
T ss_pred             cccceeccc
Confidence            455444443

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.12  E-value=1.6e-10  Score=116.83  Aligned_cols=103  Identities=17%  Similarity=0.166  Sum_probs=58.8

Q ss_pred             EEEccCC-cccccCCccccCCCCCceEeccC-CcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCC
Q 036117          471 NVSFSYN-NFSGKLPPGICRGGNLIYLTANV-NKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGD  548 (641)
Q Consensus       471 ~L~ls~n-~l~~~~~~~~~~~~~L~~L~l~~-n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~  548 (641)
                      .++++++ .++ .+|. +..+++|+.|++++ |++.+..+..|.++++|+.|+|++|++.+..+..|+.+++|+.|+|++
T Consensus        12 ~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~   89 (347)
T 2ifg_A           12 GLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSF   89 (347)
T ss_dssp             CEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCS
T ss_pred             EEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCC
Confidence            4466665 555 3555 55556666666654 555555555555666666666666666655555555666666666666


Q ss_pred             CcccccCChhhhcCCCCCEEeCcCCcCc
Q 036117          549 NQLSGVLTSNWGKCTNLSNFRISGNRIK  576 (641)
Q Consensus       549 n~~~~~~~~~~~~l~~L~~L~L~~n~l~  576 (641)
                      |++++..+..+..++ |+.|+|.+|++.
T Consensus        90 N~l~~~~~~~~~~~~-L~~l~l~~N~~~  116 (347)
T 2ifg_A           90 NALESLSWKTVQGLS-LQELVLSGNPLH  116 (347)
T ss_dssp             SCCSCCCSTTTCSCC-CCEEECCSSCCC
T ss_pred             CccceeCHHHcccCC-ceEEEeeCCCcc
Confidence            666554444444443 666666666554

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.10  E-value=2.6e-10  Score=115.26  Aligned_cols=106  Identities=20%  Similarity=0.144  Sum_probs=91.7

Q ss_pred             ceEeccCC-cccCCCccccccCCCCcEEECCC-CcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCc
Q 036117          494 IYLTANVN-KLVGPIPESLWNCTGLTRVRLEQ-NRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRIS  571 (641)
Q Consensus       494 ~~L~l~~n-~~~~~~~~~l~~~~~L~~L~l~~-n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~  571 (641)
                      ..++.+++ ++. .+|. +..+++|++|+|++ |.+.+..+..|+.+++|+.|+|++|++++..|..|.++++|++|+|+
T Consensus        11 ~~v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~   88 (347)
T 2ifg_A           11 SGLRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLS   88 (347)
T ss_dssp             SCEECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECC
T ss_pred             CEEEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCC
Confidence            35688887 676 5787 89999999999996 99998888889999999999999999999999999999999999999


Q ss_pred             CCcCcccCCccccCCCCCCEEeCCCCcCccc
Q 036117          572 GNRIKGGIPAELGNLTYLQNLDIFDNQLTGK  602 (641)
Q Consensus       572 ~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  602 (641)
                      +|++++..+..+..++ |+.|+|.+|++...
T Consensus        89 ~N~l~~~~~~~~~~~~-L~~l~l~~N~~~c~  118 (347)
T 2ifg_A           89 FNALESLSWKTVQGLS-LQELVLSGNPLHCS  118 (347)
T ss_dssp             SSCCSCCCSTTTCSCC-CCEEECCSSCCCCC
T ss_pred             CCccceeCHHHcccCC-ceEEEeeCCCccCC
Confidence            9999976666676666 99999999998743

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.97  E-value=8.1e-08  Score=98.11  Aligned_cols=62  Identities=11%  Similarity=0.066  Sum_probs=34.8

Q ss_pred             CCCCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccC
Q 036117          384 EIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSS  446 (641)
Q Consensus       384 ~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~  446 (641)
                      .+..+.+|+.+.+.++.++.....+|.+|.+|+.+.+..+ ++..-..+|.+|.+|+.+.+..
T Consensus       281 aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~  342 (379)
T 4h09_A          281 LCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPK  342 (379)
T ss_dssp             TTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCT
T ss_pred             ccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECC
Confidence            3455566666666655555444555666666666666543 3323334566666666666644

>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}

Probab=98.90  E-value=2.7e-07  Score=94.24  Aligned_cols=97  Identities=13%  Similarity=0.095  Sum_probs=52.3

Q ss_pred             ccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCC
Q 036117          487 ICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLS  566 (641)
Q Consensus       487 ~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~  566 (641)
                      +.++..|+.+.+..+ +......+|.+|++|+.+.+.++.+......+|.++.+|+.++|..+ ++.....+|.+|++|+
T Consensus       259 F~~~~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~  336 (379)
T 4h09_A          259 LQNCTALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALS  336 (379)
T ss_dssp             TTTCTTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCC
T ss_pred             cceeehhcccccccc-ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCC
Confidence            334444444444322 22122234566666666666666565555556666666777666543 4444455666777777


Q ss_pred             EEeCcCCcCcccCCccccCC
Q 036117          567 NFRISGNRIKGGIPAELGNL  586 (641)
Q Consensus       567 ~L~L~~n~l~~~~p~~l~~l  586 (641)
                      .+.+..+ ++..-..+|.++
T Consensus       337 ~i~ip~~-v~~I~~~aF~~c  355 (379)
T 4h09_A          337 TISYPKS-ITLIESGAFEGS  355 (379)
T ss_dssp             CCCCCTT-CCEECTTTTTTS
T ss_pred             EEEECCc-cCEEchhHhhCC
Confidence            7766543 333334445544

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.86  E-value=1.4e-09  Score=109.29  Aligned_cols=60  Identities=12%  Similarity=0.089  Sum_probs=28.7

Q ss_pred             ccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCcccc--CCCCCceEecc
Q 036117          431 STIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGIC--RGGNLIYLTAN  499 (641)
Q Consensus       431 ~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~--~~~~L~~L~l~  499 (641)
                      ..+..+|+|+.|.+++|.-. .++. +. .      ++|++|++..|.++......+.  .+++|+.|+++
T Consensus       166 ~ll~~~P~L~~L~L~g~~~l-~l~~-~~-~------~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~  227 (362)
T 2ra8_A          166 PVLDAMPLLNNLKIKGTNNL-SIGK-KP-R------PNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLY  227 (362)
T ss_dssp             HHHHTCTTCCEEEEECCBTC-BCCS-CB-C------TTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEE
T ss_pred             HHHhcCCCCcEEEEeCCCCc-eecc-cc-C------CCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEe
Confidence            44455666777766665211 1111 11 1      2566666666555433222222  45566666553

>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}

Probab=98.82  E-value=1.9e-09  Score=108.29  Aligned_cols=150  Identities=15%  Similarity=0.225  Sum_probs=100.2

Q ss_pred             CccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccc--cCCCCcEEECCC--CcCccc-----cCccc--C
Q 036117          468 FLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLW--NCTGLTRVRLEQ--NRLDGD-----ITNAL--G  536 (641)
Q Consensus       468 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~--~~~~L~~L~l~~--n~l~~~-----~~~~~--~  536 (641)
                      +|+.|++++|.-. .++. + ..++|+.|++..|.+.......+.  .+++|+.|+|+.  +...+.     +...+  .
T Consensus       173 ~L~~L~L~g~~~l-~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~  249 (362)
T 2ra8_A          173 LLNNLKIKGTNNL-SIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKD  249 (362)
T ss_dssp             TCCEEEEECCBTC-BCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTT
T ss_pred             CCcEEEEeCCCCc-eecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcC
Confidence            8999999887311 3333 3 378999999988887544333343  689999998853  221111     11122  3


Q ss_pred             CCCCCcEEeCCCCcccccCChhhh---cCCCCCEEeCcCCcCccc----CCccccCCCCCCEEeCCCCcCcccCCccccC
Q 036117          537 IYPDLQYIDLGDNQLSGVLTSNWG---KCTNLSNFRISGNRIKGG----IPAELGNLTYLQNLDIFDNQLTGKIPAQLFR  609 (641)
Q Consensus       537 ~l~~L~~L~Ls~n~~~~~~~~~~~---~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~  609 (641)
                      .+|+|+.|++++|.+.+..+..+.   .+++|++|+|+.|.+.+.    ++..+..+++|+.|+|++|.++...-..+..
T Consensus       250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~  329 (362)
T 2ra8_A          250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK  329 (362)
T ss_dssp             TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred             CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence            578999999999988765444443   478899999999988763    3444566789999999999887543333332


Q ss_pred             -CCCCCEEeCcCCC
Q 036117          610 -SSFLIRLNLRRNQ  622 (641)
Q Consensus       610 -~~~L~~l~l~~n~  622 (641)
                       +  ...++++.++
T Consensus       330 al--g~~~~~~~~~  341 (362)
T 2ra8_A          330 SL--PMKIDVSDSQ  341 (362)
T ss_dssp             HC--CSEEECCSBC
T ss_pred             Hc--CCEEEecCCc
Confidence             2  3557888776

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.57  E-value=2.3e-08  Score=90.51  Aligned_cols=115  Identities=18%  Similarity=0.174  Sum_probs=77.6

Q ss_pred             ccccCCCCcEEECCCC-cCccc----cCcccCCCCCCcEEeCCCCccccc----CChhhhcCCCCCEEeCcCCcCccc--
Q 036117          510 SLWNCTGLTRVRLEQN-RLDGD----ITNALGIYPDLQYIDLGDNQLSGV----LTSNWGKCTNLSNFRISGNRIKGG--  578 (641)
Q Consensus       510 ~l~~~~~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~Ls~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~--  578 (641)
                      .+...++|++|++++| .+...    +...+...+.|++|+|++|++...    +...+...++|++|+|++|.+.+.  
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence            4555677777777777 66532    334555667788888888877653    234455567788888888887643  


Q ss_pred             --CCccccCCCCCCEEeC--CCCcCccc----CCccccCCCCCCEEeCcCCCCc
Q 036117          579 --IPAELGNLTYLQNLDI--FDNQLTGK----IPAQLFRSSFLIRLNLRRNQLS  624 (641)
Q Consensus       579 --~p~~l~~l~~L~~L~L--~~n~l~~~----ip~~l~~~~~L~~l~l~~n~l~  624 (641)
                        +...+...++|++|+|  ++|.+...    +...+...++|++|++++|.+.
T Consensus       111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence              3455666778888888  77888654    3344455678888888888774

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.50  E-value=1.8e-08  Score=95.77  Aligned_cols=66  Identities=29%  Similarity=0.382  Sum_probs=33.4

Q ss_pred             CCCCCcEEeCCCCcccc--cCChhhhcCCCCCEEeCcCCcCcccCCccccCCC--CCCEEeCCCCcCcccCC
Q 036117          537 IYPDLQYIDLGDNQLSG--VLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLT--YLQNLDIFDNQLTGKIP  604 (641)
Q Consensus       537 ~l~~L~~L~Ls~n~~~~--~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~--~L~~L~L~~n~l~~~ip  604 (641)
                      .++.|+.|+|++|++++  .++..+..+++|+.|+|++|.+.+.  ..+..+.  +|++|+|++|++.+.+|
T Consensus       168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~  237 (267)
T 3rw6_A          168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFR  237 (267)
T ss_dssp             HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred             hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccC
Confidence            35555666666665554  2334445555555555555555533  2222222  55555555555554444

>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1

Probab=98.44  E-value=4.7e-08  Score=88.43  Aligned_cols=115  Identities=19%  Similarity=0.182  Sum_probs=74.5

Q ss_pred             cccCCCCCceEeccCC-cccCC----CccccccCCCCcEEECCCCcCccc----cCcccCCCCCCcEEeCCCCccccc--
Q 036117          486 GICRGGNLIYLTANVN-KLVGP----IPESLWNCTGLTRVRLEQNRLDGD----ITNALGIYPDLQYIDLGDNQLSGV--  554 (641)
Q Consensus       486 ~~~~~~~L~~L~l~~n-~~~~~----~~~~l~~~~~L~~L~l~~n~l~~~----~~~~~~~l~~L~~L~Ls~n~~~~~--  554 (641)
                      .+...+.|++|++++| .+...    +...+...++|++|+|++|.+...    +...+...+.|++|+|++|.+++.  
T Consensus        31 ~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~  110 (185)
T 1io0_A           31 IQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGI  110 (185)
T ss_dssp             HHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHH
T ss_pred             HHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHH
Confidence            3444566666666666 55431    233455567777888887777542    234445567788888888887754  


Q ss_pred             --CChhhhcCCCCCEEeC--cCCcCccc----CCccccCCCCCCEEeCCCCcCc
Q 036117          555 --LTSNWGKCTNLSNFRI--SGNRIKGG----IPAELGNLTYLQNLDIFDNQLT  600 (641)
Q Consensus       555 --~~~~~~~l~~L~~L~L--~~n~l~~~----~p~~l~~l~~L~~L~L~~n~l~  600 (641)
                        +...+...++|++|+|  ++|.+...    +...+...++|++|+|++|.+.
T Consensus       111 ~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~  164 (185)
T 1io0_A          111 LALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG  164 (185)
T ss_dssp             HHHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred             HHHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence              3445666678888888  77877643    3344555678888888888775

>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A

Probab=98.34  E-value=1e-07  Score=90.55  Aligned_cols=80  Identities=23%  Similarity=0.278  Sum_probs=43.6

Q ss_pred             hcCCCCCEEeCcCCcCcc--cCCccccCCCCCCEEeCCCCcCcccCCccccCCC--CCCEEeCcCCCCcccCcc------
Q 036117          560 GKCTNLSNFRISGNRIKG--GIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSS--FLIRLNLRRNQLSDKIPA------  629 (641)
Q Consensus       560 ~~l~~L~~L~L~~n~l~~--~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~~--~L~~l~l~~n~l~~~~p~------  629 (641)
                      .+++.|+.|+|++|++++  .+|..++.+++|+.|+|++|.+.+.  ..+..+.  .|++|++++|++++.+|.      
T Consensus       167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~  244 (267)
T 3rw6_A          167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYIS  244 (267)
T ss_dssp             HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHH
T ss_pred             hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHH
Confidence            345566666666666654  3344455566666666666666532  2223332  566666666666655542      


Q ss_pred             -cccCCCCCcCCC
Q 036117          630 -EIGKLSRLQYLD  641 (641)
Q Consensus       630 -~~~~l~~L~~l~  641 (641)
                       .+..+++|+.||
T Consensus       245 ~il~~~P~L~~LD  257 (267)
T 3rw6_A          245 AIRERFPKLLRLD  257 (267)
T ss_dssp             HHHHHCTTCCEES
T ss_pred             HHHHHCcccCeEC
Confidence             244555555554

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.12  E-value=5.6e-07  Score=79.07  Aligned_cols=84  Identities=8%  Similarity=-0.005  Sum_probs=48.5

Q ss_pred             CCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCc-ccccCChhhhcC----CCCCEEeCcCCc-CcccCCccccCCCC
Q 036117          515 TGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQ-LSGVLTSNWGKC----TNLSNFRISGNR-IKGGIPAELGNLTY  588 (641)
Q Consensus       515 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~-~~~~~~~~~~~l----~~L~~L~L~~n~-l~~~~p~~l~~l~~  588 (641)
                      ..|+.|++++|.++..-...+..+++|++|+|++|. +++.....+..+    ++|++|+|++|. +++.--..+..+++
T Consensus        61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~  140 (176)
T 3e4g_A           61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN  140 (176)
T ss_dssp             CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred             ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence            456666666666655544555666666666666664 555444444442    356666666664 54433344555666


Q ss_pred             CCEEeCCCCc
Q 036117          589 LQNLDIFDNQ  598 (641)
Q Consensus       589 L~~L~L~~n~  598 (641)
                      |+.|+|++|+
T Consensus       141 L~~L~L~~c~  150 (176)
T 3e4g_A          141 LKYLFLSDLP  150 (176)
T ss_dssp             CCEEEEESCT
T ss_pred             CCEEECCCCC
Confidence            6666666664

>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A

Probab=98.10  E-value=8.3e-07  Score=77.98  Aligned_cols=83  Identities=8%  Similarity=0.035  Sum_probs=40.2

Q ss_pred             CCceEeccCCcccCCCccccccCCCCcEEECCCCc-CccccCcccCCC----CCCcEEeCCCCc-ccccCChhhhcCCCC
Q 036117          492 NLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNR-LDGDITNALGIY----PDLQYIDLGDNQ-LSGVLTSNWGKCTNL  565 (641)
Q Consensus       492 ~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~-l~~~~~~~~~~l----~~L~~L~Ls~n~-~~~~~~~~~~~l~~L  565 (641)
                      .|+.||+++|.++..--..+.+|++|+.|+|++|. ++..-...++.+    ++|++|+|++|. +++.....+.++++|
T Consensus        62 ~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~L  141 (176)
T 3e4g_A           62 KIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRNL  141 (176)
T ss_dssp             CEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTTC
T ss_pred             eEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCCC
Confidence            45555555555444333344555555555555553 333222233332    245555555553 554444444555555


Q ss_pred             CEEeCcCCc
Q 036117          566 SNFRISGNR  574 (641)
Q Consensus       566 ~~L~L~~n~  574 (641)
                      ++|++++|+
T Consensus       142 ~~L~L~~c~  150 (176)
T 3e4g_A          142 KYLFLSDLP  150 (176)
T ss_dssp             CEEEEESCT
T ss_pred             CEEECCCCC
Confidence            555555554

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.40  E-value=0.00012  Score=65.53  Aligned_cols=112  Identities=12%  Similarity=0.126  Sum_probs=69.1

Q ss_pred             ccCCCCcEEECCCC-cCcc----ccCcccCCCCCCcEEeCCCCccccc----CChhhhcCCCCCEEeCcCCcCccc----
Q 036117          512 WNCTGLTRVRLEQN-RLDG----DITNALGIYPDLQYIDLGDNQLSGV----LTSNWGKCTNLSNFRISGNRIKGG----  578 (641)
Q Consensus       512 ~~~~~L~~L~l~~n-~l~~----~~~~~~~~l~~L~~L~Ls~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~----  578 (641)
                      .+-+.|++|+|++| ++..    .+...+.....|+.|+|++|++.+.    +.+.+..-++|++|+|++|.+.+.    
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a  117 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR  117 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence            44466777777764 5543    2344556667777888888777643    233445567788888888877543    


Q ss_pred             CCccccCCCCCCEEeCCCC---cCccc----CCccccCCCCCCEEeCcCCCC
Q 036117          579 IPAELGNLTYLQNLDIFDN---QLTGK----IPAQLFRSSFLIRLNLRRNQL  623 (641)
Q Consensus       579 ~p~~l~~l~~L~~L~L~~n---~l~~~----ip~~l~~~~~L~~l~l~~n~l  623 (641)
                      +-+.+..-+.|++|+|++|   .+...    +...+..-++|..|+++.|..
T Consensus       118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~  169 (197)
T 1pgv_A          118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASM  169 (197)
T ss_dssp             HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCH
T ss_pred             HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCc
Confidence            2234555567888888765   33322    333444557788888876654

>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1

Probab=97.11  E-value=0.00019  Score=64.20  Aligned_cols=65  Identities=20%  Similarity=0.230  Sum_probs=34.5

Q ss_pred             CCCCCCCEEECCCC-CCCcc----CchhccCCCCCCEEECCCCcCCCC----CccccCCCCCCCEEEcccccCC
Q 036117           85 SAFPNLTALNLNMN-NLVGS----IPAGIGNATKLILLDLSSNNLTNP----IPPEIGYLSDLRVLLLYNNSLT  149 (641)
Q Consensus        85 ~~l~~L~~L~L~~n-~~~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~l~~n~~~  149 (641)
                      ..-+.|++|+|+++ .+.+.    +..++..-+.|++|+|++|.+.+.    +...+..-+.|++|+|++|.+.
T Consensus        38 ~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig  111 (197)
T 1pgv_A           38 EDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLT  111 (197)
T ss_dssp             TTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCC
T ss_pred             hcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCC
Confidence            34456666666664 55432    334455556666666666666533    2222333455555666555554

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.31  E-value=0.0089  Score=49.73  Aligned_cols=56  Identities=16%  Similarity=0.150  Sum_probs=29.1

Q ss_pred             EEECCCCcCc-cccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCc
Q 036117          519 RVRLEQNRLD-GDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIK  576 (641)
Q Consensus       519 ~L~l~~n~l~-~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~  576 (641)
                      .++.+++.++ ..+|..  -.++|+.|+|++|+++...+..|..+++|+.|+|++|++.
T Consensus        12 ~v~Cs~~~L~~~~vP~~--lp~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           12 LVDCGRRGLTWASLPTA--FPVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             EEECCSSCCCTTTSCSC--CCTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             EEEeCCCCCccccCCCC--CCcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            4455555443 223322  1234566666666666555555555666666666666553

>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*

Probab=96.03  E-value=0.011  Score=49.08  Aligned_cols=57  Identities=19%  Similarity=0.315  Sum_probs=46.4

Q ss_pred             cEEeCCCCccc-ccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCc
Q 036117          542 QYIDLGDNQLS-GVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLT  600 (641)
Q Consensus       542 ~~L~Ls~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  600 (641)
                      ..++.++++++ ..+|..+  .++|++|+|++|+++...+..|..+++|+.|+|++|++.
T Consensus        11 ~~v~Cs~~~L~~~~vP~~l--p~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~   68 (130)
T 3rfe_A           11 TLVDCGRRGLTWASLPTAF--PVDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR   68 (130)
T ss_dssp             TEEECCSSCCCTTTSCSCC--CTTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred             CEEEeCCCCCccccCCCCC--CcCCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence            47888999886 3556443  347999999999999776777899999999999999886

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	641
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-21
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	4e-16
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	2e-15
d2omza2	384	c.10.2.1 (A:33-416) Internalin A {Listeria monocyt	6e-14
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	8e-21
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-14
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	9e-13
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	3e-12
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	6e-12
d1ogqa_	313	c.10.2.8 (A:) Polygalacturonase inhibiting protein	2e-08
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	7e-18
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	4e-16
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	6e-15
d1xkua_	305	c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 99	2e-07
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-15
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	3e-14
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	4e-14
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	9e-12
d1ozna_	284	c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 recept	2e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-11
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-10
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	7e-10
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-09
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	2e-08
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	6e-07
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	1e-06
d1p9ag_	266	c.10.2.7 (G:) von Willebrand factor binding domain	3e-06
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	6e-08
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	1e-04
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.003
d1xwdc1	242	c.10.2.7 (C:18-259) Follicle-stimulating hormone r	0.004
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-08
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	6e-06
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-05
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	2e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	3e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	7e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	8e-04
d1jl5a_	353	c.10.2.6 (A:) Leucine rich effector protein YopM {	0.002
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	1e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	9e-07
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-06
d2astb2	284	c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p1	2e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	2e-07
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	5e-06
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	4e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	9e-05
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	1e-04
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.001
d1h6ua2	227	c.10.2.1 (A:36-262) Internalin H {Listeria monocyt	0.002
d1w8aa_	192	c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanoga	6e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	7e-07
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	2e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	3e-04
d1dcea3	124	c.10.2.2 (A:444-567) Rab geranylgeranyltransferase	6e-04
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	2e-06
d1h6ta2	210	c.10.2.1 (A:31-240) Internalin B {Listeria monocyt	0.004
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	1e-05
d1a9na_	162	c.10.2.4 (A:) Splicesomal U2A' protein {Human (Hom	9e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	3e-05
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	1e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	2e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	4e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	9e-04
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.001
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.002
d1z7xw1	460	c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (	0.003
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	9e-05
d2omxa2	199	c.10.2.1 (A:37-235) Internalin B {Listeria monocyt	0.003
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	2e-04
d2ifga3	156	c.10.2.7 (A:36-191) High affinity nerve growth fac	0.002
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	7e-04
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.002
d2ca6a1	344	c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal dom	0.004
d1koha1	162	c.10.2.3 (A:201-362) mRNA export factor tap {Human	0.002

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 93.1 bits (230), Expect = 6e-21
 Identities = 69/384 (17%), Positives = 127/384 (33%), Gaps = 34/384 (8%)

Query: 82  FDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVL 141
           F  +A        L   N+  ++     +  ++  L      + +     + YL++L  +
Sbjct: 16  FTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKS--IDGVEYLNNLTQI 71

Query: 142 LLYNNSLTGQIP-HQLSNLQ----NAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLL 196
              NN LT   P   L+ L     N   +          +        +          L
Sbjct: 72  NFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNL 131

Query: 197 EKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSF------EGEIPR 250
                     + +  +     L             +     NLT          +     
Sbjct: 132 TNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS 191

Query: 251 EIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLN 310
            +     L  L    N+++   P  I   +NL+ L  + N        +L +L  L  L+
Sbjct: 192 VLAKLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASLTNLTDLD 247

Query: 311 LKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISEL-------GISNNQ 363
           L +  +++  P  L     LT L+L  N ++   PL+  +     EL           + 
Sbjct: 248 LANNQISNLAP--LSGLTKLTELKLGANQISNISPLAGLTALTNLELNENQLEDISPISN 305

Query: 364 LSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANN 423
           L  +  L L  N++S      +  L KL+ L+  +NK S      + NLTN+  L   +N
Sbjct: 306 LKNLTYLTLYFNNISD--ISPVSSLTKLQRLFFANNKVSD--VSSLANLTNINWLSAGHN 361

Query: 424 FFNGSIPSTIGNLSSLVKLSLSSN 447
             +   P  + NL+ + +L L+  
Sbjct: 362 QISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 78.5 bits (192), Expect = 4e-16
 Identities = 74/391 (18%), Positives = 129/391 (32%), Gaps = 28/391 (7%)

Query: 231 LENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHEN 290
           L       L K +    +        ++  L+  +  +     D +  L+NL  + F  N
Sbjct: 21  LAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFSNN 76

Query: 291 LFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLAS 350
               + P  L NL +L  + + +  +    P           L  +       L      
Sbjct: 77  QLTDITP--LKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLKNLTNL 134

Query: 351 LRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIG 410
            R        ++  +      LQ      ++     L        L  +         + 
Sbjct: 135 NRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISVLA 194

Query: 411 NLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLR 470
            LTNL  L   NN  +   P  I   ++L +LSL+ NQL       + +  +      L 
Sbjct: 195 KLTNLESLIATNNQISDITPLGIL--TNLDELSLNGNQLKD--IGTLASLTN------LT 244

Query: 471 NVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGD 530
           ++  + N  S   P        L  L    N++    P  L   T LT + L +N+L+  
Sbjct: 245 DLDLANNQISNLAPLSGLT--KLTELKLGANQISNISP--LAGLTALTNLELNENQLEDI 300

Query: 531 ITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQ 590
                    +L Y+ L  N +S +  S     T L     + N++     + L NLT + 
Sbjct: 301 SPI--SNLKNLTYLTLYFNNISDI--SPVSSLTKLQRLFFANNKVSD--VSSLANLTNIN 354

Query: 591 NLDIFDNQLTGKIPAQLFRSSFLIRLNLRRN 621
            L    NQ++   P  L   + + +L L   
Sbjct: 355 WLSAGHNQISDLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 76.2 bits (186), Expect = 2e-15
 Identities = 86/441 (19%), Positives = 144/441 (32%), Gaps = 76/441 (17%)

Query: 157 SNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSD 216
           + L       +G   +   D V    +  +T L  D   ++     +   + L  ++ S+
Sbjct: 19  TALAEKMKTVLGKTNV--TDTVSQTDLDQVTTLQADRLGIKSI-DGVEYLNNLTQINFSN 75

Query: 217 NLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEI 276
           N +    P++ LT L ++        +                      N     I    
Sbjct: 76  NQLTDITPLKNLTKLVDILM------NNNQIADITPLANLTNLTGLTLFNNQITDIDPLK 129

Query: 277 GLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELS 336
            L +   +      +        +  L  L  L   S G   +  K L     L  L++S
Sbjct: 130 NLTNLNRLELSSNTISD------ISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDIS 183

Query: 337 INNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYL 396
            N ++    L+   L  +  L  +NNQ+S+I  L +  N               L+ L L
Sbjct: 184 SNKVSDISVLA--KLTNLESLIATNNQISDITPLGILTN---------------LDELSL 226

Query: 397 FDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPE 456
             N+        + +LTNL DL LANN  +   P  +  L+ L +L L +NQ++   P  
Sbjct: 227 NGNQLKD--IGTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISPL- 281

Query: 457 IGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTG 516
                           +   N    +    I    NL YLT   N +    P        
Sbjct: 282 ---------AGLTALTNLELNENQLEDISPISNLKNLTYLTLYFNNISDISP-------- 324

Query: 517 LTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIK 576
                             +     LQ +   +N++S V  S+    TN++      N+I 
Sbjct: 325 ------------------VSSLTKLQRLFFANNKVSDV--SSLANLTNINWLSAGHNQIS 364

Query: 577 GGIPAELGNLTYLQNLDIFDN 597
              P  L NLT +  L + D 
Sbjct: 365 DLTP--LANLTRITQLGLNDQ 383

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]} Length = 384

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

 Score = 71.6 bits (174), Expect = 6e-14
 Identities = 70/390 (17%), Positives = 128/390 (32%), Gaps = 30/390 (7%)

Query: 253 KTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLK 312
               +     LG+  +T T+      L  +  L+        +    +  L  L ++N  
Sbjct: 19  TALAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKSI--DGVEYLNNLTQINFS 74

Query: 313 SAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQL 372
           +  L    P  L     L  + ++ N     +               +N          L
Sbjct: 75  NNQLTDITP--LKNLTKLVDILMNNNQ-IADITPLANLTNLTGLTLFNNQITDIDPLKNL 131

Query: 373 QMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPST 432
              +        I  +  L  L        G     +  L NL  L+  +   N     +
Sbjct: 132 TNLNRLELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDIS 191

Query: 433 I-GNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGG 491
           +   L++L  L  ++NQ++   P  I  +        L  +S + N         +    
Sbjct: 192 VLAKLTNLESLIATNNQISDITPLGILTN--------LDELSLNGNQLKD--IGTLASLT 241

Query: 492 NLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQL 551
           NL  L    N++    P  L   T LT ++L  N++         +       +L  N+ 
Sbjct: 242 NLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNIS----PLAGLTALTNLELNEN 295

Query: 552 SGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSS 611
                S      NL+   +  N I    P  + +LT LQ L   +N+++    + L   +
Sbjct: 296 QLEDISPISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFANNKVSD--VSSLANLT 351

Query: 612 FLIRLNLRRNQLSDKIPAEIGKLSRLQYLD 641
            +  L+   NQ+SD  P  +  L+R+  L 
Sbjct: 352 NINWLSAGHNQISDLTP--LANLTRITQLG 379

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 91.4 bits (225), Expect = 8e-21
 Identities = 69/296 (23%), Positives = 118/296 (39%), Gaps = 11/296 (3%)

Query: 23  EAKALLNWKSSLVS-SSLPSWTAINSNSGPCNWNGIQCN---EVGSISEINLANSGLDGT 78
           + +ALL  K  L + ++L SW    ++     W G+ C+   +   ++ ++L+   L   
Sbjct: 7   DKQALLQIKKDLGNPTTLSSWLP-TTDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKP 65

Query: 79  LDGFD-FSAFPNLTALNL-NMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLS 136
                  +  P L  L +  +NNLVG IP  I   T+L  L ++  N++  IP  +  + 
Sbjct: 66  YPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIK 125

Query: 137 DLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLT-DLWLDYNL 195
            L  L    N+L+G +P  +S+L N   +    N +    P  +   + L   + +  N 
Sbjct: 126 TLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNR 185

Query: 196 LEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTF 255
           L            L F+DLS N++ G   +   +             +       ++   
Sbjct: 186 LTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSD--KNTQKIHLAKNSLAFDLGKVGLS 243

Query: 256 PKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNL 311
             L  L L  N++ GT+P  +  L  L  L    N   G IP   GNL+R      
Sbjct: 244 KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIP-QGGNLQRFDVSAY 298

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 70.9 bits (172), Expect = 6e-14
 Identities = 67/268 (25%), Positives = 101/268 (37%), Gaps = 13/268 (4%)

Query: 360 SNNQLSEIISLQLQMNDLSGK--LPPEIGLLPKLEYLYLFDN-KFSGPIPQQIGNLTNLF 416
           ++ Q   + +L L   +L     +P  +  LP L +LY+       GPIP  I  LT L 
Sbjct: 45  TDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLH 104

Query: 417 DLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSY 476
            L + +   +G+IP  +  + +LV L  S N L+GTLPP I +         L  ++F  
Sbjct: 105 YLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISS------LPNLVGITFDG 158

Query: 477 NNFSGKLPPGICRGGNLIYLTANV-NKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNAL 535
           N  SG +P        L        N+L G IP +  N             +     + L
Sbjct: 159 NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN--LAFVDLSRNMLEGDASVL 216

Query: 536 GIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIF 595
                                   G   NL+   +  NRI G +P  L  L +L +L++ 
Sbjct: 217 FGSDKNTQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVS 276

Query: 596 DNQLTGKIPAQLFRSSFLIRLNLRRNQL 623
            N L G+IP Q              N+ 
Sbjct: 277 FNNLCGEIP-QGGNLQRFDVSAYANNKC 303

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 67.5 bits (163), Expect = 9e-13
 Identities = 60/279 (21%), Positives = 101/279 (36%), Gaps = 23/279 (8%)

Query: 212 LDLSDNLIMGHIPI-EQLTHLENLEYLNLTKN-SFEGEIPREIKTFPKLRHLKLGQNKLT 269
           LDLS   +    PI   L +L  L +L +    +  G IP  I    +L +L +    ++
Sbjct: 55  LDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVS 114

Query: 270 GTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCAN 329
           G IPD +  +  L  L+F  N   G +P S+ +L  L  +      ++ +IP   G  + 
Sbjct: 115 GAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSK 174

Query: 330 LTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLP 389
           L        N          +   ++ + +S N L    S+    +              
Sbjct: 175 LFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKN------------ 222

Query: 390 KLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQL 449
                             ++G   NL  L L NN   G++P  +  L  L  L++S N L
Sbjct: 223 --TQKIHLAKNSLAFDLGKVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNL 280

Query: 450 TGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGIC 488
            G + P+ GN +           +++ N      P   C
Sbjct: 281 CGEI-PQGGNLQR------FDVSAYANNKCLCGSPLPAC 312

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 65.9 bits (159), Expect = 3e-12
 Identities = 58/278 (20%), Positives = 103/278 (37%), Gaps = 22/278 (7%)

Query: 329 NLTFLELSINNLTGSLPL--SLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIG 386
            +  L+LS  NL    P+  SLA+L  ++ L I                +L G +PP I 
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGIN------------NLVGPIPPAIA 98

Query: 387 LLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSS 446
            L +L YLY+     SG IP  +  +  L  L  + N  +G++P +I +L +LV ++   
Sbjct: 99  KLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDG 158

Query: 447 NQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGP 506
           N+++G +P   G+    F    +     +           +        +      ++  
Sbjct: 159 NRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFG 218

Query: 507 IPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLS 566
             ++                  G   N          +DL +N++ G L     +   L 
Sbjct: 219 SDKNTQKIHLAKNSLAFDLGKVGLSKNL-------NGLDLRNNRIYGTLPQGLTQLKFLH 271

Query: 567 NFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIP 604
           +  +S N + G IP + GNL         +N+     P
Sbjct: 272 SLNVSFNNLCGEIP-QGGNLQRFDVSAYANNKCLCGSP 308

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 64.8 bits (156), Expect = 6e-12
 Identities = 58/256 (22%), Positives = 89/256 (34%), Gaps = 13/256 (5%)

Query: 390 KLEYLYLFDNKFSG--PIPQQIGNLTNLFDLQLANN-FFNGSIPSTIGNLSSLVKLSLSS 446
           ++  L L         PIP  + NL  L  L +       G IP  I  L+ L  L ++ 
Sbjct: 51  RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITH 110

Query: 447 NQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGP 506
                               + L  + FSYN  SG LPP I    NL+ +T + N++ G 
Sbjct: 111 TN------VSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGA 164

Query: 507 IPESLWNCTGLTR-VRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNL 565
           IP+S  + + L   + + +NRL G I                +                 
Sbjct: 165 IPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLAFVDLSRNMLEGDASVLFGSDKNTQ 224

Query: 566 SNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSD 625
                  +         L       +L   +N++ G +P  L +  FL  LN+  N L  
Sbjct: 225 KIHLAKNSLAFDLGKVGLSKNLNGLDLR--NNRIYGTLPQGLTQLKFLHSLNVSFNNLCG 282

Query: 626 KIPAEIGKLSRLQYLD 641
           +IP + G L R     
Sbjct: 283 EIP-QGGNLQRFDVSA 297

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]} Length = 313

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

 Score = 54.0 bits (128), Expect = 2e-08
 Identities = 22/67 (32%), Positives = 30/67 (44%), Gaps = 1/67 (1%)

Query: 87  FPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNN 146
             NL  L+L  N + G++P G+     L  L++S NNL   I P+ G L    V    NN
Sbjct: 243 SKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEI-PQGGNLQRFDVSAYANN 301

Query: 147 SLTGQIP 153
                 P
Sbjct: 302 KCLCGSP 308

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 82.4 bits (202), Expect = 7e-18
 Identities = 58/262 (22%), Positives = 96/262 (36%), Gaps = 17/262 (6%)

Query: 386 GLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLS 445
            L P    L L +NK +        NL NL  L L NN  +   P     L  L +L LS
Sbjct: 28  DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 87

Query: 446 SNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVG 505
            NQL   LP ++  +  +             + F+            ++ L  N  K  G
Sbjct: 88  KNQLK-ELPEKMPKTLQELRVHENEITKVRKSVFN------GLNQMIVVELGTNPLKSSG 140

Query: 506 PIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNL 565
               +      L+ +R+    +    T   G+ P L  + L  N+++ V  ++     NL
Sbjct: 141 IENGAFQGMKKLSYIRIADTNIT---TIPQGLPPSLTELHLDGNKITKVDAASLKGLNNL 197

Query: 566 SNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSD 625
           +   +S N I       L N  +L+ L + +N+L  K+P  L    ++  + L  N +S 
Sbjct: 198 AKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISA 256

Query: 626 ------KIPAEIGKLSRLQYLD 641
                   P    K +    + 
Sbjct: 257 IGSNDFCPPGYNTKKASYSGVS 278

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 77.4 bits (189), Expect = 4e-16
 Identities = 46/278 (16%), Positives = 84/278 (30%), Gaps = 13/278 (4%)

Query: 88  PNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNS 147
           P+   L+L  N +         N   L  L L +N ++   P     L  L  L L  N 
Sbjct: 31  PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQ 90

Query: 148 LTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECS 207
           L          LQ   +       +          M  +                     
Sbjct: 91  LKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMK 150

Query: 208 KLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNK 267
           KL ++ ++D  I   IP        +L  L+L  N         +K    L  L L  N 
Sbjct: 151 KLSYIRIADTNIT-TIPQGLPP---SLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNS 206

Query: 268 LTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNS------SIP 321
           ++      +    +L  L  + N     +P  L + + +Q + L +  +++        P
Sbjct: 207 ISAVDNGSLANTPHLRELHLNNNKLVK-VPGGLADHKYIQVVYLHNNNISAIGSNDFCPP 265

Query: 322 KELGFCANLTFLELSINNLTGS--LPLSLASLRQISEL 357
                 A+ + + L  N +      P +   +   + +
Sbjct: 266 GYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAV 303

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 73.5 bits (179), Expect = 6e-15
 Identities = 52/264 (19%), Positives = 90/264 (34%), Gaps = 17/264 (6%)

Query: 247 EIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRL 306
           ++P+++   P    L L  NK+T     +   L NL  L    N    + P +   L +L
Sbjct: 24  KVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 307 QRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSE 366
           +RL L    L     K       L   E  I  +  S+   L  +  +            
Sbjct: 82  ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI 141

Query: 367 IISL-----QLQMNDLSGKLPPEI--GLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQ 419
                    +L    ++      I  GL P L  L+L  NK +      +  L NL  L 
Sbjct: 142 ENGAFQGMKKLSYIRIADTNITTIPQGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLG 201

Query: 420 LANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNF 479
           L+ N  +     ++ N   L +L L++N+L       +         ++++ V    NN 
Sbjct: 202 LSFNSISAVDNGSLANTPHLRELHLNNNKL-------VKVPGGLADHKYIQVVYLHNNNI 254

Query: 480 SGKLPPGICRGGNLIYLTANVNKL 503
           S  +              A+ + +
Sbjct: 255 SA-IGSNDFCPPGYNTKKASYSGV 277

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]} Length = 305

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

 Score = 51.2 bits (121), Expect = 2e-07
 Identities = 33/183 (18%), Positives = 55/183 (30%), Gaps = 28/183 (15%)

Query: 482 KLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDL 541
           K+P  +    +   L    NK+         N   L  + L  N++      A      L
Sbjct: 24  KVPKDL--PPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKL 81

Query: 542 QYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIK-----------------------GG 578
           + + L  NQL  +          L        +++                       G 
Sbjct: 82  ERLYLSKNQLKELPEKMPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGI 141

Query: 579 IPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIPAEIGKLSRLQ 638
                  +  L  + I D  +T  IP  L  S  L  L+L  N+++    A +  L+ L 
Sbjct: 142 ENGAFQGMKKLSYIRIADTNIT-TIPQGLPPS--LTELHLDGNKITKVDAASLKGLNNLA 198

Query: 639 YLD 641
            L 
Sbjct: 199 KLG 201

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 74.8 bits (182), Expect = 2e-15
 Identities = 59/258 (22%), Positives = 97/258 (37%), Gaps = 7/258 (2%)

Query: 87  FPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNN 146
                 + L+ N +     A       L +L L SN L          L+ L  L L +N
Sbjct: 31  PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDN 90

Query: 147 SLTGQI-PHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKF-PSFIA 204
           +    + P     L     L +    L++  P  F+G+A+L  L+L  N L+        
Sbjct: 91  AQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFR 150

Query: 205 ECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLG 264
           +   L  L L  N I   +P      L +L+ L L +N      P   +   +L  L L 
Sbjct: 151 DLGNLTHLFLHGNRISS-VPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLF 209

Query: 265 QNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKEL 324
            N L+    + +  L  L+ L  ++N +      +      LQ+    S+ +  S+P+ L
Sbjct: 210 ANNLSALPTEALAPLRALQYLRLNDNPWVCDCR-ARPLWAWLQKFRGSSSEVPCSLPQRL 268

Query: 325 GFCANLTFLELSINNLTG 342
              A      L+ N+L G
Sbjct: 269 ---AGRDLKRLAANDLQG 283

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.4 bits (173), Expect = 3e-14
 Identities = 49/258 (18%), Positives = 84/258 (32%), Gaps = 8/258 (3%)

Query: 386 GLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLS 445
           G+    + ++L  N+ S           NL  L L +N       +    L+ L +L LS
Sbjct: 29  GIPAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLS 88

Query: 446 SNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVG 505
            N    ++ P   +         L  +           P        L YL    N L  
Sbjct: 89  DNAQLRSVDPATFHG-----LGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQA 143

Query: 506 PIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNL 565
              ++  +   LT + L  NR+      A      L  + L  N+++ V    +     L
Sbjct: 144 LPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRL 203

Query: 566 SNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSD 625
               +  N +       L  L  LQ L + DN       A+    ++L +     +++  
Sbjct: 204 MTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRARPLW-AWLQKFRGSSSEVPC 262

Query: 626 KIPAEIG--KLSRLQYLD 641
            +P  +    L RL   D
Sbjct: 263 SLPQRLAGRDLKRLAAND 280

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 71.0 bits (172), Expect = 4e-14
 Identities = 56/306 (18%), Positives = 92/306 (30%), Gaps = 41/306 (13%)

Query: 117 LDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPD 176
                  L   +P  I   +  + + L+ N ++          +N  +L           
Sbjct: 16  TSCPQQGLQA-VPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILW---------- 62

Query: 177 PVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEY 236
                             L     +     + L  LDLSDN  +  +       L  L  
Sbjct: 63  -------------LHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHT 109

Query: 237 LNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLI 296
           L+L +   +   P   +    L++L L  N L     D    L NL  L  H N    + 
Sbjct: 110 LHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVP 169

Query: 297 PSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISE 356
             +   L  L RL L    +    P        L  L L  NNL+     +LA LR +  
Sbjct: 170 ERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQY 229

Query: 357 LGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLF 416
           L +++N                        L   L+      ++    +PQ++    +L 
Sbjct: 230 LRLNDNPWVCDCRA--------------RPLWAWLQKFRGSSSEVPCSLPQRLAGR-DLK 274

Query: 417 DLQLAN 422
            L   +
Sbjct: 275 RLAAND 280

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 64.1 bits (154), Expect = 9e-12
 Identities = 56/268 (20%), Positives = 88/268 (32%), Gaps = 22/268 (8%)

Query: 233 NLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLF 292
             + + L  N          +    L  L L  N L          L+ LE L+  +N  
Sbjct: 33  ASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQ 92

Query: 293 HGLI-PSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASL 351
              + P++   L RL  L+L   GL    P      A L +L L  N L      +   L
Sbjct: 93  LRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDL 152

Query: 352 RQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGN 411
             ++ L +  N++S +                    L  L+ L L  N+ +   P    +
Sbjct: 153 GNLTHLFLHGNRISSVP-------------ERAFRGLHSLDRLLLHQNRVAHVHPHAFRD 199

Query: 412 LTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRN 471
           L  L  L L  N  +      +  L +L  L L+ N              +     +L+ 
Sbjct: 200 LGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR-------ARPLWAWLQK 252

Query: 472 VSFSYNNFSGKLPPGICRGGNLIYLTAN 499
              S +     LP  +  G +L  L AN
Sbjct: 253 FRGSSSEVPCSLPQRL-AGRDLKRLAAN 279

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.7 bits (135), Expect = 2e-09
 Identities = 40/195 (20%), Positives = 65/195 (33%), Gaps = 6/195 (3%)

Query: 77  GTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLS 136
            ++D   F     L  L+L+   L    P        L  L L  N L          L 
Sbjct: 94  RSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLG 153

Query: 137 DLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYN-L 195
           +L  L L+ N ++         L +   L +  N +    P  F+ +  L  L+L  N L
Sbjct: 154 NLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNL 213

Query: 196 LEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTF 255
                  +A    L +L L+DN  +       L     L+    + +     +P+ +   
Sbjct: 214 SALPTEALAPLRALQYLRLNDNPWVCDCRARPL--WAWLQKFRGSSSEVPCSLPQRLA-- 269

Query: 256 PKLRHLKLGQNKLTG 270
                 +L  N L G
Sbjct: 270 -GRDLKRLAANDLQG 283

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 62.4 bits (150), Expect = 2e-11
 Identities = 45/211 (21%), Positives = 67/211 (31%), Gaps = 7/211 (3%)

Query: 83  DFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLL 142
           + S   +   +N +  NL  ++P  +   T +  L LS N L       +   + L  L 
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLPKDTTI--LHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 143 LYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSF 202
           L    LT         L     L +  N L+    +     A          L       
Sbjct: 62  LDRAELTKLQVDG--TLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGA 119

Query: 203 IAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLK 262
           +    +L  L L  N  +  +P   LT    LE L+L  N+        +     L  L 
Sbjct: 120 LRGLGELQELYLKGN-ELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLL 178

Query: 263 LGQNKLTGTIPDEIGLLSNLEILEFHENLFH 293
           L +N L  TIP        L     H N + 
Sbjct: 179 LQENSLY-TIPKGFFGSHLLPFAFLHGNPWL 208

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 60.5 bits (145), Expect = 1e-10
 Identities = 46/206 (22%), Positives = 68/206 (33%), Gaps = 11/206 (5%)

Query: 108 IGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRI 167
           +      + ++    NLT  +PP++    D  +L L  N L       L        L  
Sbjct: 6   VSKVASHLEVNCDKRNLTA-LPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQL-- 60

Query: 168 GANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIM--GHIPI 225
               L+  +  K +   +L  L        +  S       L  L + D        +P+
Sbjct: 61  ---NLDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPL 117

Query: 226 EQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEIL 285
             L  L  L+ L L  N  +   P  +   PKL  L L  N LT      +  L NL+ L
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177

Query: 286 EFHENLFHGLIPSSLGNLRRLQRLNL 311
              EN  +  IP        L    L
Sbjct: 178 LLQENSLYT-IPKGFFGSHLLPFAFL 202

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.8 bits (138), Expect = 7e-10
 Identities = 49/211 (23%), Positives = 75/211 (35%), Gaps = 8/211 (3%)

Query: 58  QCNEVGSISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILL 117
           + ++V S  E+N     L             + T L+L+ N L     A +   T+L  L
Sbjct: 5   EVSKVASHLEVNCDKRNLTALPPDL----PKDTTILHLSENLLYTFSLATLMPYTRLTQL 60

Query: 118 DLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDP 177
           +L             G L  L  L L +N L          L    +L +  N L     
Sbjct: 61  NLDRAE--LTKLQVDGTLPVLGTLDLSHNQLQSLPLLG-QTLPALTVLDVSFNRLTSLPL 117

Query: 178 VKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYL 237
              +G+  L +L+L  N L+  P  +   +  +      N  +  +P   L  LENL+ L
Sbjct: 118 GALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTL 177

Query: 238 NLTKNSFEGEIPREIKTFPKLRHLKLGQNKL 268
            L +NS    IP+       L    L  N  
Sbjct: 178 LLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.4 bits (137), Expect = 1e-09
 Identities = 37/207 (17%), Positives = 62/207 (29%), Gaps = 12/207 (5%)

Query: 251 EIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLN 310
           E+        +   +  LT  +P ++    +  IL   ENL +    ++L    RL +LN
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 311 LKSAGLNSSIP-------KELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQ 363
           L  A L              L    N       +     +L +   S  +++ L +   +
Sbjct: 62  LDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121

Query: 364 LSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFD-NKFSGPIPQQIGNLTNLFDLQLAN 422
               +       +    LPP +              N  +      +  L NL  L L  
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181

Query: 423 NFFNGSIPSTIGNLSSLVKLSLSSNQL 449
           N    +IP        L    L  N  
Sbjct: 182 NSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.2 bits (126), Expect = 2e-08
 Identities = 36/216 (16%), Positives = 65/216 (30%), Gaps = 13/216 (6%)

Query: 408 QIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPR 467
           ++  + +  ++         ++P  +        L LS N L       +          
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTR----- 56

Query: 468 FLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRL 527
            L  ++      +     G      ++      +  +  +P        LT + +  NRL
Sbjct: 57  -LTQLNLDRAELTKLQVDGTLP---VLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRL 112

Query: 528 DGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLT 587
                 AL    +LQ + L  N+L  +          L    ++ N +       L  L 
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE 172

Query: 588 YLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQL 623
            L  L + +N L   IP   F S  L    L  N  
Sbjct: 173 NLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.9 bits (115), Expect = 6e-07
 Identities = 36/210 (17%), Positives = 66/210 (31%), Gaps = 13/210 (6%)

Query: 432 TIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGG 491
            +  ++S ++++     LT  LPP++        P+    +  S N         +    
Sbjct: 5   EVSKVASHLEVNCDKRNLT-ALPPDL--------PKDTTILHLSENLLYTFSLATLMPYT 55

Query: 492 NLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQL 551
            L  L  +  +        +     +       +     +       P L  +D+  N+L
Sbjct: 56  RLTQLNLDRAE---LTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRL 112

Query: 552 SGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSS 611
           + +          L    + GN +K   P  L     L+ L + +N LT      L    
Sbjct: 113 TSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLE 172

Query: 612 FLIRLNLRRNQLSDKIPAEIGKLSRLQYLD 641
            L  L L+ N L   IP        L +  
Sbjct: 173 NLDTLLLQENSLYT-IPKGFFGSHLLPFAF 201

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.2 bits (113), Expect = 1e-06
 Identities = 39/213 (18%), Positives = 68/213 (31%), Gaps = 42/213 (19%)

Query: 299 SLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELG 358
            +  +     +N     L +++P +L    + T L LS N L      +L    ++++L 
Sbjct: 5   EVSKVASHLEVNCDKRNL-TALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLN 61

Query: 359 ISNNQLSEIISLQ--------------------------------LQMNDLSGKLPPEIG 386
           +   +L+++                                    +  N L+      + 
Sbjct: 62  LDRAELTKLQVDGTLPVLGTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTSLPLGALR 121

Query: 387 LLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSS 446
            L +L+ LYL  N+     P  +     L  L LANN         +  L +L  L L  
Sbjct: 122 GLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQE 181

Query: 447 NQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNF 479
           N L  T+P     S        L       N +
Sbjct: 182 NSLY-TIPKGFFGSHL------LPFAFLHGNPW 207

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 266

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.6 bits (109), Expect = 3e-06
 Identities = 37/212 (17%), Positives = 64/212 (30%), Gaps = 13/212 (6%)

Query: 362 NQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLA 421
           ++++  + +     +L+  LPP++        L+L +N         +   T L  L L 
Sbjct: 7   SKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLD 63

Query: 422 NNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSG 481
                       G L  L         L  +                L  +  S+N  + 
Sbjct: 64  RAELT--KLQVDGTLPVL-------GTLDLSHNQLQSLPLLGQTLPALTVLDVSFNRLTS 114

Query: 482 KLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDL 541
                +   G L  L    N+L    P  L     L ++ L  N L       L    +L
Sbjct: 115 LPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENL 174

Query: 542 QYIDLGDNQLSGVLTSNWGKCTNLSNFRISGN 573
             + L +N L   +   +     L    + GN
Sbjct: 175 DTLLLQENSLY-TIPKGFFGSHLLPFAFLHGN 205

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.8 bits (122), Expect = 6e-08
 Identities = 30/237 (12%), Positives = 54/237 (22%), Gaps = 10/237 (4%)

Query: 89  NLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSL 148
           +        + +   IP+ +      I L      L            DL  + +  N +
Sbjct: 9   SNRVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 65

Query: 149 TGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLE----KFPSFIA 204
              I   + +                               +L  +            I 
Sbjct: 66  LEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIH 125

Query: 205 ECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLG 264
              K++     +  I        +        L L KN  +                   
Sbjct: 126 SLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSD 185

Query: 265 QNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIP 321
            N L     D     S   IL+      H L    L NL++L+  +  +      +P
Sbjct: 186 NNNLEELPNDVFHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYN---LKKLP 239

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (96), Expect = 1e-04
 Identities = 31/259 (11%), Positives = 66/259 (25%), Gaps = 33/259 (12%)

Query: 117 LDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNL---QNAWLLRIGANYLE 173
                + +T  IP ++    +   L      L        S     +   + +     + 
Sbjct: 13  FLCQESKVTE-IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVI 69

Query: 174 DPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLEN 233
           + D            +    NLL   P        L +L +S+  I     + ++  L+ 
Sbjct: 70  EADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQK 129

Query: 234 LEYLNLT-KNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLF 292
           +        N    E    +    +   L L +N +              E+     N  
Sbjct: 130 VLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNL 189

Query: 293 HGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLR 352
             L             L++                        S   +       L +L+
Sbjct: 190 EELPNDVFHGASGPVILDI------------------------SRTRIHSLPSYGLENLK 225

Query: 353 QISELGISNNQLSEIISLQ 371
           ++     S   L ++ +L+
Sbjct: 226 KLRAR--STYNLKKLPTLE 242

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (85), Expect = 0.003
 Identities = 27/220 (12%), Positives = 55/220 (25%), Gaps = 8/220 (3%)

Query: 405 IPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDF 464
           IP  +    N  +L+                   L K+ +S N +       I       
Sbjct: 23  IPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV----LEVIEADVFSN 76

Query: 465 GPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGL--TRVRL 522
            P+         NN     P       NL YL  +   +         +        ++ 
Sbjct: 77  LPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQD 136

Query: 523 EQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAE 582
             N    +  + +G+  +   + L  N +  +    +             N ++      
Sbjct: 137 NINIHTIERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDV 196

Query: 583 LGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQ 622
               +    LDI   ++       L     L   +    +
Sbjct: 197 FHGASGPVILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 242

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.8 bits (83), Expect = 0.004
 Identities = 24/213 (11%), Positives = 55/213 (25%), Gaps = 2/213 (0%)

Query: 386 GLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLS 445
            L      L     K             +L  ++++ N     I + + +    +     
Sbjct: 26  DLPRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEI-- 83

Query: 446 SNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVG 505
             +    L      +  +        +S +       +         L+ +  N+N    
Sbjct: 84  RIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTI 143

Query: 506 PIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNL 565
                +        + L +N +      A       +     +N L  +    +   +  
Sbjct: 144 ERNSFVGLSFESVILWLNKNGIQEIHNCAFNGTQLDELNLSDNNNLEELPNDVFHGASGP 203

Query: 566 SNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQ 598
               IS  RI       L NL  L+    ++ +
Sbjct: 204 VILDISRTRIHSLPSYGLENLKKLRARSTYNLK 236

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 52.1 bits (123), Expect = 8e-08
 Identities = 55/340 (16%), Positives = 87/340 (25%), Gaps = 42/340 (12%)

Query: 89  NLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSL 148
               L LN   L  S+P    +   L  L  S N+LT  +P     L    +L+  NN  
Sbjct: 39  QAHELELNNLGL-SSLPELPPH---LESLVASCNSLTE-LPELPQSLK--SLLVDNNNLK 91

Query: 149 TGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSK 208
                  L         ++                     L    +L        A  ++
Sbjct: 92  ALSDLPPLLEYLGVSNNQLEKLPELQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQ 151

Query: 209 LMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKL 268
           L  L    NL            L+ L  L L+  S         +         L     
Sbjct: 152 LEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYA 211

Query: 269 TGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRL-------------NLKSAG 315
              +   +  L          + +   +P    +L  L                      
Sbjct: 212 DNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNA 271

Query: 316 LNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMN 375
            ++ I        +L  L +S N L   LP     L     L  S N L+E+        
Sbjct: 272 SSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPRLE---RLIASFNHLAEVPE------ 321

Query: 376 DLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNL 415
                      L   L+ L++  N      P    ++ +L
Sbjct: 322 -----------LPQNLKQLHVEYNPLRE-FPDIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 46.4 bits (108), Expect = 6e-06
 Identities = 23/87 (26%), Positives = 34/87 (39%), Gaps = 10/87 (11%)

Query: 220 MGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLL 279
             +          +LE LN++ N    E+P      P+L  L    N L   +P+   L 
Sbjct: 272 SSNEIRSLCDLPPSLEELNVSNNKLI-ELPALP---PRLERLIASFNHLA-EVPE---LP 323

Query: 280 SNLEILEFHENLFHGL--IPSSLGNLR 304
            NL+ L    N       IP S+ +LR
Sbjct: 324 QNLKQLHVEYNPLREFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 45.2 bits (105), Expect = 2e-05
 Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 10/95 (10%)

Query: 190 WLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIP 249
           +       +  S       L  L++S+N ++  +P         LE L  + N    E+P
Sbjct: 267 YYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELP----ALPPRLERLIASFNHLA-EVP 320

Query: 250 REIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEI 284
                   L+ L +  N L    PD    + +L +
Sbjct: 321 ELP---QNLKQLHVEYNPLR-EFPDIPESVEDLRM 351

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.8 bits (104), Expect = 2e-05
 Identities = 20/89 (22%), Positives = 30/89 (33%), Gaps = 9/89 (10%)

Query: 371 QLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIP 430
              +N  S ++     L P LE L + +NK    +P     L  L     + N     +P
Sbjct: 266 LYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPRLERLI---ASFNHLA-EVP 320

Query: 431 STIGNLSSLVKLSLSSNQLTGTLPPEIGN 459
               NL     L +  N L    P    +
Sbjct: 321 ELPQNLKQ---LHVEYNPLR-EFPDIPES 345

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 44.4 bits (103), Expect = 3e-05
 Identities = 20/90 (22%), Positives = 34/90 (37%), Gaps = 9/90 (10%)

Query: 170 NYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLT 229
           N   +          SL +L +  N L + P+      +L  L  S N +   +P     
Sbjct: 270 NASSNEIRSLCDLPPSLEELNVSNNKLIELPALP---PRLERLIASFNHL-AEVP----E 321

Query: 230 HLENLEYLNLTKNSFEGEIPREIKTFPKLR 259
             +NL+ L++  N    E P   ++   LR
Sbjct: 322 LPQNLKQLHVEYNPLR-EFPDIPESVEDLR 350

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.7 bits (96), Expect = 2e-04
 Identities = 52/314 (16%), Positives = 89/314 (28%), Gaps = 22/314 (7%)

Query: 326 FCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISL--QLQMNDLSGKLPP 383
                  LEL+   L+ SLP     L     L  S N L+E+  L   L+   +      
Sbjct: 36  LDRQAHELELNNLGLS-SLPELPPHLE---SLVASCNSLTELPELPQSLKSLLVDNNNLK 91

Query: 384 EIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLS 443
            +  LP L       N     +P+               +  N S+        SL  ++
Sbjct: 92  ALSDLPPLLEYLGVSNNQLEKLPEL-----QNSSFLKIIDVDNNSLKKLPDLPPSLEFIA 146

Query: 444 LSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKL 503
             +NQL      +     +                 S +           +    N+  L
Sbjct: 147 AGNNQLEELPELQNLPFLTAIYADNNSLKKLPDLPLSLESIVAGNNILEELPELQNLPFL 206

Query: 504 VGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCT 563
                ++    T        +     D       Y               V  + +   +
Sbjct: 207 TTIYADNNLLKTLPDLPPSLEALNVRDN------YLTDLPELPQSLTFLDVSENIFSGLS 260

Query: 564 NLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQL 623
            L       N     I +       L+ L++ +N+L  ++PA   R   L RL    N L
Sbjct: 261 ELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLI-ELPALPPR---LERLIASFNHL 316

Query: 624 SDKIPAEIGKLSRL 637
           ++ +P     L +L
Sbjct: 317 AE-VPELPQNLKQL 329

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 41.0 bits (94), Expect = 3e-04
 Identities = 28/164 (17%), Positives = 50/164 (30%), Gaps = 12/164 (7%)

Query: 29  NWKSSLVSSSLPSWTAINSNSGPCNWNGIQCNEVGSISEINLANSGLDGTLDGFDFSAFP 88
                L +    +         P +   +   +        L  S     +    FS   
Sbjct: 201 QNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLS 260

Query: 89  NLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSL 148
            L      +N     I +       L  L++S+N L   +P        L  L+   N L
Sbjct: 261 ELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPR---LERLIASFNHL 316

Query: 149 TGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLD 192
             ++P    NL+    L +  N L +   +      S+ DL ++
Sbjct: 317 A-EVPELPQNLKQ---LHVEYNPLREFPDI----PESVEDLRMN 352

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.8 bits (91), Expect = 7e-04
 Identities = 50/309 (16%), Positives = 83/309 (26%), Gaps = 18/309 (5%)

Query: 185 SLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSF 244
            L  L    N L + P        L  L + +N +     +  L     +    L K   
Sbjct: 59  HLESLVASCNSLTELPELP---QSLKSLLVDNNNLKALSDLPPLLEYLGVSNNQLEKLPE 115

Query: 245 EGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLR 304
                           LK   +          G     E+ E     F   I +   +L+
Sbjct: 116 LQNSSFLKIIDVDNNSLKKLPDLPPSLEFIAAGNNQLEELPELQNLPFLTAIYADNNSLK 175

Query: 305 RLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQL 364
           +L  L L    + +                L+      +L  +L  L    E     +  
Sbjct: 176 KLPDLPLSLESIVAGNNILEELPELQNLPFLTTIYADNNLLKTLPDLPPSLEALNVRDNY 235

Query: 365 SEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNF 424
              +    Q              L +L     + N  S  I        +L +L ++NN 
Sbjct: 236 LTDLPELPQSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNK 295

Query: 425 FNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLP 484
               +P+    L    +L  S N L   +P    N         L+ +   YN    + P
Sbjct: 296 LI-ELPALPPRLE---RLIASFNHLA-EVPELPQN---------LKQLHVEYNPLR-EFP 340

Query: 485 PGICRGGNL 493
                  +L
Sbjct: 341 DIPESVEDL 349

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 39.8 bits (91), Expect = 8e-04
 Identities = 16/90 (17%), Positives = 30/90 (33%), Gaps = 8/90 (8%)

Query: 512 WNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRIS 571
              + L       N    +I +   + P L+ +++ +N+L  +          L     S
Sbjct: 257 SGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIELPAL----PPRLERLIAS 312

Query: 572 GNRIKGGIPAELGNLTYLQNLDIFDNQLTG 601
            N +   +P    NL     L +  N L  
Sbjct: 313 FNHLA-EVPELPQNLKQ---LHVEYNPLRE 338

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]} Length = 353

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

 Score = 38.7 bits (88), Expect = 0.002
 Identities = 22/95 (23%), Positives = 33/95 (34%), Gaps = 10/95 (10%)

Query: 260 HLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSS 319
                 N  +  I     L  +LE L    N     +P+       L+RL      L + 
Sbjct: 264 PNLYYLNASSNEIRSLCDLPPSLEELNVSNNKLIE-LPALPPR---LERLIASFNHL-AE 318

Query: 320 IPKELGFCANLTFLELSINNLTG--SLPLSLASLR 352
           +P+      NL  L +  N L     +P S+  LR
Sbjct: 319 VPELPQ---NLKQLHVEYNPLREFPDIPESVEDLR 350

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.3 bits (121), Expect = 1e-07
 Identities = 30/230 (13%), Positives = 71/230 (30%), Gaps = 12/230 (5%)

Query: 89  NLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLT-NPIPPEIGYLSDLRVLLLYNNS 147
            + A     + +   +     +  ++  +DLS++ +  + +   +   S L+ L L    
Sbjct: 24  GVIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLR 82

Query: 148 LTGQIPHQLSNLQNAWLLRIGANYLEDPDPVK---------FKGMASLTDLWLDYNLLEK 198
           L+  I + L+   N   L +          ++          +   S    + + ++   
Sbjct: 83  LSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVA 142

Query: 199 FPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKL 258
                   ++L       NL    +          +          + +  +E      L
Sbjct: 143 VAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYL 202

Query: 259 RHLKL-GQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQ 307
           +HL L     +      E+G +  L+ L+    +  G +      L  LQ
Sbjct: 203 QHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHLQ 252

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.6 bits (114), Expect = 9e-07
 Identities = 41/272 (15%), Positives = 85/272 (31%), Gaps = 13/272 (4%)

Query: 376 DLSGK--LPPEIGLLPK--LEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNG-SIP 430
           DL+GK   P   G L    +       +    P+ +   +   +  + L+N+     ++ 
Sbjct: 6   DLTGKNLHPDVTGRLLSQGVIAFRCPRSFMDQPLAEH-FSPFRVQHMDLSNSVIEVSTLH 64

Query: 431 STIGNLSSLVKLSLSSNQLTGTLPPEIGNSKS--DFGPRFLRNVSFSYNNFSGKLPPGIC 488
             +   S L  LSL   +L+  +   +  + +            S             + 
Sbjct: 65  GILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLD 124

Query: 489 RGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGD 548
                         +   +       T L      +N    D++  +   P+L ++DL D
Sbjct: 125 ELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSD 184

Query: 549 NQL-SGVLTSNWGKCTNLSNFRISG-NRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQ 606
           + +        + +   L +  +S    I      ELG +  L+ L +F     G +   
Sbjct: 185 SVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQL- 243

Query: 607 LFRSSFLIRLNLRRNQLSDKIPAEIGKLSRLQ 638
           L  +  L  L +  +  +      IG     +
Sbjct: 244 LKEA--LPHLQINCSHFTTIARPTIGNKKNQE 273

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (112), Expect = 2e-06
 Identities = 38/259 (14%), Positives = 81/259 (31%), Gaps = 14/259 (5%)

Query: 185 SLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSF 244
            +       + +++  +      ++  +DLS+++I        L+    L+ L+L     
Sbjct: 24  GVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRL 83

Query: 245 EGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLR 304
              I   +     L  L L                +   +L     L    +        
Sbjct: 84  SDPIVNTLAKNSNLVRLNLSGC-------SGFSEFALQTLLSSCSRLDELNLSWCFDFTE 136

Query: 305 RLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQL 364
           +  ++ +       +     G+  NL   +LS         + L     +        + 
Sbjct: 137 KHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF 196

Query: 365 SEIISLQ----LQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQL 420
            ++  LQ     +  D+  +   E+G +P L+ L +F     G +      L +   LQ+
Sbjct: 197 FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPH---LQI 253

Query: 421 ANNFFNGSIPSTIGNLSSL 439
             + F      TIGN  + 
Sbjct: 254 NCSHFTTIARPTIGNKKNQ 272

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.8 bits (112), Expect = 2e-06
 Identities = 39/231 (16%), Positives = 72/231 (31%), Gaps = 13/231 (5%)

Query: 64  SISEINLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNN 123
            +  ++L+NS ++ +      S    L  L+L    L   I   +   + L+ L+LS  +
Sbjct: 47  RVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCS 106

Query: 124 LTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLED--------- 174
             +    +    S  R+  L  +         +          I    L           
Sbjct: 107 GFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSD 166

Query: 175 -PDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLEN 233
               V+        DL     L         + + L  L LS    +    + +L  +  
Sbjct: 167 LSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPT 226

Query: 234 LEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEI 284
           L+ L +     +G +    +  P   HL++  +  T      IG   N EI
Sbjct: 227 LKTLQVFGIVPDGTLQLLKEALP---HLQINCSHFTTIARPTIGNKKNQEI 274

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]} Length = 284

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.3 bits (103), Expect = 2e-05
 Identities = 45/262 (17%), Positives = 87/262 (33%), Gaps = 14/262 (5%)

Query: 117 LDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPD 176
           LDL+  NL   +   +     +       + +   +    S  +   +    +       
Sbjct: 5   LDLTGKNLHPDVTGRL-LSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTL 63

Query: 177 PVKFKGMASLTDLWLDYN-LLEKFPSFIAECSKLMFLDLSDN-LIMGHIPIEQLTHLENL 234
                  + L +L L+   L +   + +A+ S L+ L+LS             L+    L
Sbjct: 64  HGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRL 123

Query: 235 EYLNL------TKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFH 288
           + LNL      T+   +  +    +T  +L      +N     +   +    NL  L+  
Sbjct: 124 DELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLS 183

Query: 289 EN-LFHGLIPSSLGNLRRLQRLNLKS-AGLNSSIPKELGFCANLTFLELSINNLTGSLPL 346
           ++ +           L  LQ L+L     +      ELG    L  L++      G+L L
Sbjct: 184 DSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQL 243

Query: 347 SLASLRQISELGISNNQLSEII 368
              +L     L I+ +  + I 
Sbjct: 244 LKEALPH---LQINCSHFTTIA 262

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 50.0 bits (118), Expect = 2e-07
 Identities = 39/226 (17%), Positives = 67/226 (29%), Gaps = 18/226 (7%)

Query: 86  AFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYN 145
           A  N   +    +N+  ++     +   +  L      +T      + YL++L  L L +
Sbjct: 17  ALANAIKIAAGKSNVTDTVT--QADLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72

Query: 146 NSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAE 205
           N +       L NL     L +  N L++   +         DL           + ++ 
Sbjct: 73  NQI--TDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSN 130

Query: 206 CSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQ 265
              L         I     +  L +L                         KL  LK   
Sbjct: 131 LQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLAN--------LSKLTTLKADD 182

Query: 266 NKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNL 311
           NK++   P  +  L NL  +    N    + P  L N   L  + L
Sbjct: 183 NKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL 224

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 45.8 bits (107), Expect = 5e-06
 Identities = 34/227 (14%), Positives = 70/227 (30%), Gaps = 18/227 (7%)

Query: 110 NATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGA 169
                I +    +N+T+ +      L  +  L  +   +T      +  L N   L +  
Sbjct: 17  ALANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKD 72

Query: 170 NYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLT 229
           N + D  P+K     +  +L  +        + +     L         +     +  L 
Sbjct: 73  NQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQ 132

Query: 230 HLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHE 289
            L          +   G    +  +    +                +  LS L  L+  +
Sbjct: 133 VLYLDLNQITNISPLAGLTNLQYLSIGNAQVS----------DLTPLANLSKLTTLKADD 182

Query: 290 NLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELS 336
           N    + P  L +L  L  ++LK+  ++   P  L   +NL  + L+
Sbjct: 183 NKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 43.1 bits (100), Expect = 4e-05
 Identities = 38/230 (16%), Positives = 71/230 (30%), Gaps = 36/230 (15%)

Query: 207 SKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQN 266
           +  + +    + +   +    L  +  L        + EG     ++    L  L+L  N
Sbjct: 19  ANAIKIAAGKSNVTDTVTQADLDGITTLSAFGTGVTTIEG-----VQYLNNLIGLELKDN 73

Query: 267 KLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLN--------- 317
           ++T   P +         L  +       I                +             
Sbjct: 74  QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133

Query: 318 -----SSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQL 372
                + I              LSI N   S    LA+L +++ L   +N++S+I     
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDI----- 188

Query: 373 QMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLAN 422
                       +  LP L  ++L +N+ S   P  + N +NLF + L N
Sbjct: 189 ----------SPLASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTN 226

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.9 bits (97), Expect = 9e-05
 Identities = 42/225 (18%), Positives = 76/225 (33%), Gaps = 20/225 (8%)

Query: 158 NLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDN 217
            L NA  +  G + + D   V    +  +T L      +      +   + L+ L+L DN
Sbjct: 17  ALANAIKIAAGKSNVTDT--VTQADLDGITTLSAFGTGVTTIEG-VQYLNNLIGLELKDN 73

Query: 218 LIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIG 277
            I    P++ LT +  LE       +       +      L   ++        + +   
Sbjct: 74  QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133

Query: 278 LLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLTFLELSI 337
           L  +L  +     L                   L       S    L   + LT L+   
Sbjct: 134 LYLDLNQITNISPLAG-----------LTNLQYLSIGNAQVSDLTPLANLSKLTTLKADD 182

Query: 338 NNLTGSLPLSLASLRQISELGISNNQLSEIISL----QLQMNDLS 378
           N ++   PL+  SL  + E+ + NNQ+S++  L     L +  L+
Sbjct: 183 NKISDISPLA--SLPNLIEVHLKNNQISDVSPLANTSNLFIVTLT 225

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.6 bits (96), Expect = 1e-04
 Identities = 35/226 (15%), Positives = 63/226 (27%), Gaps = 29/226 (12%)

Query: 411 NLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLR 470
            L N   +    +    ++  T  +L  +  LS     +T      +    +      L 
Sbjct: 17  ALANAIKIAAGKSNVTDTV--TQADLDGITTLSAFGTGVTTI--EGVQYLNN------LI 66

Query: 471 NVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPE--------------SLWNCTG 516
            +    N  +   P         + L+ N  K V  I                +      
Sbjct: 67  GLELKDNQITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLA 126

Query: 517 LTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIK 576
                         ITN   +        L          +     + L+  +   N+I 
Sbjct: 127 GLSNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKIS 186

Query: 577 GGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQ 622
              P  L +L  L  + + +NQ++   P  L  +S L  + L  NQ
Sbjct: 187 DISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTL-TNQ 227

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.9 bits (89), Expect = 0.001
 Identities = 37/218 (16%), Positives = 68/218 (31%), Gaps = 19/218 (8%)

Query: 68  INLANSGLDGTLDGFDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNP 127
           I    S +  T+     +    +T L+     +  +I  G+     LI L+L  N +T+ 
Sbjct: 24  IAAGKSNVTDTVT---QADLDGITTLSAFGTGVT-TIE-GVQYLNNLIGLELKDNQITDL 78

Query: 128 IPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLT 187
            P +           L   +      + L N+     L+           +      +  
Sbjct: 79  APLK----------NLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGL 128

Query: 188 DLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGE 247
                  L     + I+  + L  L            +  L +L  L  L    N     
Sbjct: 129 SNLQVLYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDI 188

Query: 248 IPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEIL 285
            P  + + P L  + L  N+++   P  +   SNL I+
Sbjct: 189 SP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIV 222

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]} Length = 227

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

 Score = 38.1 bits (87), Expect = 0.002
 Identities = 32/201 (15%), Positives = 68/201 (33%), Gaps = 7/201 (3%)

Query: 255 FPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSA 314
                 +  G++ +T T+      L  +  L         +    +  L  L  L LK  
Sbjct: 18  LANAIKIAAGKSNVTDTVTQA--DLDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDN 73

Query: 315 GL-NSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQ 373
            + + +  K L     L      + N++    L       ++   I++      +S    
Sbjct: 74  QITDLAPLKNLTKITELELSGNPLKNVSAIAGLQSIKTLDLTSTQITDVTPLAGLSNLQV 133

Query: 374 MNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTI 433
           +     ++     L       YL            + NL+ L  L+  +N  +   P  +
Sbjct: 134 LYLDLNQITNISPLAGLTNLQYLSIGNAQVSDLTPLANLSKLTTLKADDNKISDISP--L 191

Query: 434 GNLSSLVKLSLSSNQLTGTLP 454
            +L +L+++ L +NQ++   P
Sbjct: 192 ASLPNLIEVHLKNNQISDVSP 212

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]} Length = 192

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

 Score = 47.9 bits (112), Expect = 6e-07
 Identities = 38/180 (21%), Positives = 66/180 (36%), Gaps = 6/180 (3%)

Query: 185 SLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSF 244
             T +      L++ P  I        L L+DN +           L +L  L L +N  
Sbjct: 9   EGTTVDCTGRGLKEIPRDIP--LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQL 66

Query: 245 EGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLR 304
            G  P   +    ++ L+LG+NK+          L  L+ L  ++N    ++P S  +L 
Sbjct: 67  TGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLN 126

Query: 305 RLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQL 364
            L  LNL S   N +      F   L    L+        P   + +R +    + +++ 
Sbjct: 127 SLTSLNLASNPFNCNCH-LAWFAEWLRKKSLNGGAARCGAP---SKVRDVQIKDLPHSEF 182

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 46.2 bits (109), Expect = 7e-07
 Identities = 34/148 (22%), Positives = 52/148 (35%), Gaps = 31/148 (20%)

Query: 117 LDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPD 176
           L L+  +LT  +   +  L  +  L L +N L    P  L+ L+   +L+   N LE+ D
Sbjct: 3   LHLAHKDLT--VLCHLEQLLLVTHLDLSHNRLRALPPA-LAALRCLEVLQASDNALENVD 59

Query: 177 PVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEY 236
            V                             +L  L L +N +     I+ L     L  
Sbjct: 60  GVAN-------------------------LPRLQELLLCNNRLQQSAAIQPLVSCPRLVL 94

Query: 237 LNLTKNSF---EGEIPREIKTFPKLRHL 261
           LNL  NS    EG   R  +  P +  +
Sbjct: 95  LNLQGNSLCQEEGIQERLAEMLPSVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 39.7 bits (92), Expect = 2e-04
 Identities = 23/125 (18%), Positives = 46/125 (36%), Gaps = 9/125 (7%)

Query: 165 LRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIP 224
           L +    L        + +  +T L L +N L   P  +   + L  L++          
Sbjct: 3   LHLAHKDLTVLCH--LEQLLLVTHLDLSHNRLRALPPAL---AALRCLEVLQASDNALEN 57

Query: 225 IEQLTHLENLEYLNLTKNSFEG-EIPREIKTFPKLRHLKLGQNKLT---GTIPDEIGLLS 280
           ++ + +L  L+ L L  N  +     + + + P+L  L L  N L    G       +L 
Sbjct: 58  VDGVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEMLP 117

Query: 281 NLEIL 285
           ++  +
Sbjct: 118 SVSSI 122

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 38.9 bits (90), Expect = 3e-04
 Identities = 26/119 (21%), Positives = 39/119 (32%), Gaps = 17/119 (14%)

Query: 333 LELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLE 392
           L L+  +LT      L  L  ++ L +S+N+L  +              PP +  L  LE
Sbjct: 3   LHLAHKDLTV--LCHLEQLLLVTHLDLSHNRLRAL--------------PPALAALRCLE 46

Query: 393 YLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTG 451
            L   DN                  L   N     +    + +   LV L+L  N L  
Sbjct: 47  VLQASDNALENVDGVANLPRLQELLLC-NNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQ 104

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 124

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 37.8 bits (87), Expect = 6e-04
 Identities = 27/119 (22%), Positives = 43/119 (36%), Gaps = 6/119 (5%)

Query: 93  LNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQI 152
           L+L   +L  ++   +     +  LDLS N L    PP +  L  L VL   +N+L    
Sbjct: 3   LHLAHKDL--TVLCHLEQLLLVTHLDLSHNRLRAL-PPALAALRCLEVLQASDNALENVD 59

Query: 153 PHQLSNLQNAWLLRIGANYLED-PDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLM 210
                NL     L +  N L+             L  L L  N L +        ++++
Sbjct: 60  GVA--NLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQERLAEML 116

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 46.9 bits (110), Expect = 2e-06
 Identities = 40/205 (19%), Positives = 79/205 (38%), Gaps = 16/205 (7%)

Query: 82  FDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVL 141
           F   AF      NL   ++  ++         +  +  +++++ +     I YL ++  L
Sbjct: 18  FSDDAFAETIKDNLKKKSVTDAVT--QNELNSIDQIIANNSDIKSVQG--IQYLPNVTKL 73

Query: 142 LLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPS 201
            L  N LT      L+NL+N   L +  N ++D   +K              +      +
Sbjct: 74  FLNGNKLTDI--KPLANLKNLGWLFLDENKVKDLSSLKDLKK---LKSLSLEHNGISDIN 128

Query: 202 FIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHL 261
            +    +L  L L +N I     + +LT L+ L   +   +         +    KL++L
Sbjct: 129 GLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIV-----PLAGLTKLQNL 183

Query: 262 KLGQNKLTGTIPDEIGLLSNLEILE 286
            L +N ++      +  L NL++LE
Sbjct: 184 YLSKNHISD--LRALAGLKNLDVLE 206

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 210

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 36.9 bits (84), Expect = 0.004
 Identities = 32/186 (17%), Positives = 64/186 (34%), Gaps = 7/186 (3%)

Query: 271 TIPDEIGLLSNLEILE--FHENLFHGLI--PSSLGNLRRLQRLNLKSAGLNSSIPKELGF 326
           T+P  I  + + +       +NL    +    +   L  + ++   ++ + S     + +
Sbjct: 9   TVPTPIKQIFSDDAFAETIKDNLKKKSVTDAVTQNELNSIDQIIANNSDIKSVQG--IQY 66

Query: 327 CANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIG 386
             N+T L L+ N LT   PL+         L  +  +    +    ++  LS +      
Sbjct: 67  LPNVTKLFLNGNKLTDIKPLANLKNLGWLFLDENKVKDLSSLKDLKKLKSLSLEHNGISD 126

Query: 387 LLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNG-SIPSTIGNLSSLVKLSLS 445
           +   +    L            I  L+ L  L   +   N  S    +  L+ L  L LS
Sbjct: 127 INGLVHLPQLESLYLGNNKITDITVLSRLTKLDTLSLEDNQISDIVPLAGLTKLQNLYLS 186

Query: 446 SNQLTG 451
            N ++ 
Sbjct: 187 KNHISD 192

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.8 bits (102), Expect = 1e-05
 Identities = 26/151 (17%), Positives = 50/151 (33%), Gaps = 9/151 (5%)

Query: 166 RIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPI 225
           ++ A  +E     ++       +L L    +    +  A   +   +D SDN I     +
Sbjct: 2   KLTAELIEQAA--QYTNAVRDRELDLRGYKIPVIENLGATLDQFDAIDFSDNEIR---KL 56

Query: 226 EQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTG-TIPDEIGLLSNLEI 284
           +    L  L+ L +  N          +  P L  L L  N L      D +  L +L  
Sbjct: 57  DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTY 116

Query: 285 LEFHENLFHGLI---PSSLGNLRRLQRLNLK 312
           L    N            +  + +++ L+ +
Sbjct: 117 LCILRNPVTNKKHYRLYVIYKVPQVRVLDFQ 147

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 9e-05
 Identities = 20/136 (14%), Positives = 41/136 (30%), Gaps = 7/136 (5%)

Query: 110 NATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGA 169
           NA +   LDL    +   I      L     +   +N +          L+    L +  
Sbjct: 16  NAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRKLDGF--PLLRRLKTLLVNN 72

Query: 170 NYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIA----ECSKLMFLDLSDNLIMGHIPI 225
           N +        + +  LT+L L  N L +          +    + +  +      H  +
Sbjct: 73  NRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTNKKHYRL 132

Query: 226 EQLTHLENLEYLNLTK 241
             +  +  +  L+  K
Sbjct: 133 YVIYKVPQVRVLDFQK 148

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.0 bits (104), Expect = 2e-05
 Identities = 18/86 (20%), Positives = 33/86 (38%), Gaps = 9/86 (10%)

Query: 84  FSAFPNLTALNLNMNNL----VGSIPAGIGNATKLILLDLSSNNLTNPIPPEIG-----Y 134
                 L  L L   ++      S+ A +     L  LDLS+N L +    ++       
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424

Query: 135 LSDLRVLLLYNNSLTGQIPHQLSNLQ 160
              L  L+LY+   + ++  +L  L+
Sbjct: 425 GCLLEQLVLYDIYWSEEMEDRLQALE 450

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (103), Expect = 3e-05
 Identities = 13/91 (14%), Positives = 29/91 (31%), Gaps = 5/91 (5%)

Query: 540 DLQYIDLGDNQLSGV-LTSNWGKCTNLSNFRISGNRIKG----GIPAELGNLTYLQNLDI 594
           D+Q +D+   +LS                 R+    +       I + L     L  L++
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 595 FDNQLTGKIPAQLFRSSFLIRLNLRRNQLSD 625
             N+L       + +        +++  L +
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (98), Expect = 1e-04
 Identities = 19/88 (21%), Positives = 32/88 (36%), Gaps = 10/88 (11%)

Query: 564 NLSNFRISGNRIK-GGIPAELGNLTYLQNLDIFDNQLTGK----IPAQLFRSSFLIRLNL 618
           ++ +  I    +        L  L   Q + + D  LT      I + L  +  L  LNL
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 619 RRNQLSDKIPAEIGKL-----SRLQYLD 641
           R N+L D     + +       ++Q L 
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLS 90

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (98), Expect = 1e-04
 Identities = 13/79 (16%), Positives = 28/79 (35%), Gaps = 9/79 (11%)

Query: 538 YPDLQYIDLGDNQLSGV----LTSNWGKCTNLSNFRISGNRIKGGIPAELG-----NLTY 588
              L+ + L D  +S      L +      +L    +S N +      +L          
Sbjct: 368 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCL 427

Query: 589 LQNLDIFDNQLTGKIPAQL 607
           L+ L ++D   + ++  +L
Sbjct: 428 LEQLVLYDIYWSEEMEDRL 446

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (98), Expect = 1e-04
 Identities = 16/82 (19%), Positives = 29/82 (35%), Gaps = 9/82 (10%)

Query: 562 CTNLSNFRISGNRIKG----GIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRS-----SF 612
            + L    ++   +       + A L     L+ LD+ +N L      QL  S       
Sbjct: 368 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCL 427

Query: 613 LIRLNLRRNQLSDKIPAEIGKL 634
           L +L L     S+++   +  L
Sbjct: 428 LEQLVLYDIYWSEEMEDRLQAL 449

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 2e-04
 Identities = 13/70 (18%), Positives = 22/70 (31%), Gaps = 4/70 (5%)

Query: 212 LDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGE----IPREIKTFPKLRHLKLGQNK 267
           LD+    +      E L  L+  + + L            I   ++  P L  L L  N+
Sbjct: 7   LDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNE 66

Query: 268 LTGTIPDEIG 277
           L       + 
Sbjct: 67  LGDVGVHCVL 76

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (96), Expect = 2e-04
 Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 13/95 (13%)

Query: 180 FKGMASLTDLWLDYNLL-----EKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLEN- 233
            +  + L  LWL    +         + +     L  LDLS+N +     ++ +  +   
Sbjct: 365 GQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQP 424

Query: 234 ---LEYLNLTKNSFEGEIPREI----KTFPKLRHL 261
              LE L L    +  E+   +    K  P LR +
Sbjct: 425 GCLLEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.5 bits (95), Expect = 2e-04
 Identities = 10/91 (10%), Positives = 28/91 (30%), Gaps = 5/91 (5%)

Query: 233 NLEYLNLTKNSFEGEIPREI-KTFPKLRHLKLGQNKLTG----TIPDEIGLLSNLEILEF 287
           +++ L++           E+     + + ++L    LT      I   + +   L  L  
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 288 HENLFHGLIPSSLGNLRRLQRLNLKSAGLNS 318
             N    +    +    +     ++   L +
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQN 93

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 4e-04
 Identities = 15/104 (14%), Positives = 32/104 (30%), Gaps = 15/104 (14%)

Query: 329 NLTFLELSINNLTGS-LPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGL 387
           ++  L++    L+ +     L  L+Q   + + +  L+E              +   + +
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARC---------KDISSALRV 53

Query: 388 LPKLEYLYLFDNKFSGPIPQQIG-----NLTNLFDLQLANNFFN 426
            P L  L L  N+        +          +  L L N    
Sbjct: 54  NPALAELNLRSNELGDVGVHCVLQGLQTPSCKIQKLSLQNCCLT 97

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (94), Expect = 4e-04
 Identities = 12/75 (16%), Positives = 27/75 (36%), Gaps = 5/75 (6%)

Query: 391 LEYLYLFDNKFS-GPIPQQIGNLTNLFDLQLANNFFNG----SIPSTIGNLSSLVKLSLS 445
           ++ L +   + S     + +  L     ++L +          I S +    +L +L+L 
Sbjct: 4   IQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLR 63

Query: 446 SNQLTGTLPPEIGNS 460
           SN+L       +   
Sbjct: 64  SNELGDVGVHCVLQG 78

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (93), Expect = 4e-04
 Identities = 18/90 (20%), Positives = 26/90 (28%), Gaps = 5/90 (5%)

Query: 281 NLEILEFHEN-LFHGLIPSSLGNLRRLQRLNLKSAGLN----SSIPKELGFCANLTFLEL 335
           +++ L+     L        L  L++ Q + L   GL       I   L     L  L L
Sbjct: 3   DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNL 62

Query: 336 SINNLTGSLPLSLASLRQISELGISNNQLS 365
             N L       +    Q     I    L 
Sbjct: 63  RSNELGDVGVHCVLQGLQTPSCKIQKLSLQ 92

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (91), Expect = 9e-04
 Identities = 16/92 (17%), Positives = 30/92 (32%), Gaps = 12/92 (13%)

Query: 206 CSKLMFLDLSDNLIMGHIPI---EQLTHLENLEYLNLTKNSFEGEIPREI-----KTFPK 257
            S L  L L+D  +           L    +L  L+L+ N        ++     +    
Sbjct: 368 GSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCL 427

Query: 258 LRHLKLGQNKLTGTIPDEIGLLS----NLEIL 285
           L  L L     +  + D +  L     +L ++
Sbjct: 428 LEQLVLYDIYWSEEMEDRLQALEKDKPSLRVI 459

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (90), Expect = 0.001
 Identities = 14/95 (14%), Positives = 25/95 (26%), Gaps = 9/95 (9%)

Query: 220 MGHIPIEQLTHLENLEYLNLTKNSFEGE----IPREIKTFPKLRHLKLGQNKLTGTIPDE 275
           +  +          L  L L            +   +     LR L L  N L      +
Sbjct: 357 VRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQ 416

Query: 276 IG-----LLSNLEILEFHENLFHGLIPSSLGNLRR 305
           +          LE L  ++  +   +   L  L +
Sbjct: 417 LVESVRQPGCLLEQLVLYDIYWSEEMEDRLQALEK 451

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (88), Expect = 0.002
 Identities = 9/54 (16%), Positives = 16/54 (29%), Gaps = 4/54 (7%)

Query: 84  FSAFPNLTALNLNMNNL----VGSIPAGIGNATKLILLDLSSNNLTNPIPPEIG 133
                    + L+   L       I + +     L  L+L SN L +     + 
Sbjct: 23  LPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVL 76

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (88), Expect = 0.002
 Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 9/81 (11%)

Query: 302 NLRRLQRLNLKSAGLN----SSIPKELGFCANLTFLELSINNLTGSLPLSLA-SLRQ--- 353
               L+ L L    ++    SS+   L    +L  L+LS N L  +  L L  S+RQ   
Sbjct: 367 PGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGC 426

Query: 354 -ISELGISNNQLSEIISLQLQ 373
            + +L + +   SE +  +LQ
Sbjct: 427 LLEQLVLYDIYWSEEMEDRLQ 447

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]} Length = 460

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.4 bits (87), Expect = 0.003
 Identities = 23/102 (22%), Positives = 40/102 (39%), Gaps = 12/102 (11%)

Query: 315 GLNSSIPKELGFCANLTFLELSINNLTG----SLPLSLASLRQISELGISNNQLSEIISL 370
           G+           + L  L L+  +++     SL  +L +   + EL +SNN L +   L
Sbjct: 356 GVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGIL 415

Query: 371 QLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNL 412
           QL  +               LE L L+D  +S  +  ++  L
Sbjct: 416 QLVESVRQPG--------CLLEQLVLYDIYWSEEMEDRLQAL 449

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 41.6 bits (96), Expect = 9e-05
 Identities = 35/204 (17%), Positives = 65/204 (31%), Gaps = 16/204 (7%)

Query: 82  FDFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVL 141
           F  +A        L   N+  ++     +  ++  L      + +     + YL++L  +
Sbjct: 12  FTDTALAEKMKTVLGKTNVTDTVS--QTDLDQVTTLQADRLGIKSI--DGVEYLNNLTQI 67

Query: 142 LLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPS 201
              NN LT         L+N   L            +      +       +N       
Sbjct: 68  NFSNNQLTDIT-----PLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDID 122

Query: 202 FIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHL 261
            +   + L  L+LS N I     +  LT         L  +S +    + +     L  L
Sbjct: 123 PLKNLTNLNRLELSSNTISDISALSGLTS-----LQQLNFSSNQVTDLKPLANLTTLERL 177

Query: 262 KLGQNKLTGTIPDEIGLLSNLEIL 285
            +  NK++      +  L+NLE L
Sbjct: 178 DISSNKVSD--ISVLAKLTNLESL 199

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]} Length = 199

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

 Score = 37.3 bits (85), Expect = 0.003
 Identities = 29/181 (16%), Positives = 58/181 (32%), Gaps = 7/181 (3%)

Query: 272 IPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFCANLT 331
             D    L+        +      +  +  +L ++  L     G+ S     + +  NLT
Sbjct: 12  FTDTA--LAEKMKTVLGKTNVTDTVSQT--DLDQVTTLQADRLGIKS--IDGVEYLNNLT 65

Query: 332 FLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKL 391
            +  S N LT   PL   +      +  +       ++    +  L+        + P  
Sbjct: 66  QINFSNNQLTDITPLKNLTKLVDILMNNNQIADITPLANLTNLTGLTLFNNQITDIDPLK 125

Query: 392 EYLYLFD-NKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLT 450
               L      S  I             QL  +    +    + NL++L +L +SSN+++
Sbjct: 126 NLTNLNRLELSSNTISDISALSGLTSLQQLNFSSNQVTDLKPLANLTTLERLDISSNKVS 185

Query: 451 G 451
            
Sbjct: 186 D 186

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.2 bits (92), Expect = 2e-04
 Identities = 23/141 (16%), Positives = 40/141 (28%), Gaps = 2/141 (1%)

Query: 185 SLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSF 244
             + L    +        +     L  L + +   + H+ +  L  L  L  L + K+  
Sbjct: 9   GSSGLRCTRDGALDSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGL 68

Query: 245 EGEIPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFH-GLIPSSLGNL 303
               P      P+L  L L  N L  ++  +     +L+ L    N  H       L   
Sbjct: 69  RFVAPDAFHFTPRLSRLNLSFNALE-SLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRW 127

Query: 304 RRLQRLNLKSAGLNSSIPKEL 324
                  +    L       L
Sbjct: 128 EEEGLGGVPEQKLQCHGQGPL 148

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 156

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.5 bits (85), Expect = 0.002
 Identities = 24/141 (17%), Positives = 42/141 (29%), Gaps = 2/141 (1%)

Query: 117 LDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQL-SNLQNAWLLRIGANYLEDP 175
           L  + +   +     +    +L  L + N      +  +    L     L I  + L   
Sbjct: 13  LRCTRDGALD-SLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFV 71

Query: 176 DPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLE 235
            P  F     L+ L L +N LE       +   L  L LS N +     +  L   E   
Sbjct: 72  APDAFHFTPRLSRLNLSFNALESLSWKTVQGLSLQELVLSGNPLHCSCALRWLQRWEEEG 131

Query: 236 YLNLTKNSFEGEIPREIKTFP 256
              + +   +      +   P
Sbjct: 132 LGGVPEQKLQCHGQGPLAHMP 152

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 39.9 bits (91), Expect = 7e-04
 Identities = 36/305 (11%), Positives = 78/305 (25%), Gaps = 23/305 (7%)

Query: 88  PNLTALNLNMNNL----VGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLL 143
            ++  + L+ N +       +   I +   L + + S              L  L   LL
Sbjct: 31  DSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALL 90

Query: 144 YNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWL----DYNLLEKF 199
               L        +    A    I       P    +     L                 
Sbjct: 91  KCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAV 150

Query: 200 PSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLR 259
                    L  +    N +      E     ++   L+  K    G  P  I+      
Sbjct: 151 NKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEG 210

Query: 260 HLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSS 319
                + K+     +    L +  +    ++  +                 L + G  ++
Sbjct: 211 LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDC-------LLSARG-AAA 262

Query: 320 IPKELGFCAN--LTFLELSINNLTGSLPLSLAS-----LRQISELGISNNQLSEIISLQL 372
           +        N  L  L L  N +      +L +     +  +  L ++ N+ SE   +  
Sbjct: 263 VVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVD 322

Query: 373 QMNDL 377
           ++ ++
Sbjct: 323 EIREV 327

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 38.7 bits (88), Expect = 0.002
 Identities = 35/319 (10%), Positives = 77/319 (24%), Gaps = 20/319 (6%)

Query: 296 IPSSLGNLRRLQRLNLKSAGLN----SSIPKELGFCANLTFLELSINNLTGSLPLSLASL 351
           + + L     ++ + L    +       + + +    +L   E S             +L
Sbjct: 23  VFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEAL 82

Query: 352 RQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGN 411
           R + +  +   +L  +          + +   +              N   GP       
Sbjct: 83  RLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIA 142

Query: 412 LTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRN 471
                            + S I   + L   S+     T      +   K          
Sbjct: 143 RALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEG 202

Query: 472 VSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDI 531
           +          L          +      +     +  +L +   L  + L    L    
Sbjct: 203 IEHLLLEG---LAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARG 259

Query: 532 TNALGIY------PDLQYIDLGDNQLSG-----VLTSNWGKCTNLSNFRISGNRIK--GG 578
             A+           LQ + L  N++       + T    K  +L    ++GNR      
Sbjct: 260 AAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 319

Query: 579 IPAELGNLTYLQNLDIFDN 597
           +  E+  +   +     D 
Sbjct: 320 VVDEIREVFSTRGRGELDE 338

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]} Length = 344

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

 Score = 37.6 bits (85), Expect = 0.004
 Identities = 51/344 (14%), Positives = 103/344 (29%), Gaps = 30/344 (8%)

Query: 308 RLNLKSAGLN---------SSIPKELGFCANLTFLELSINNLTG----SLPLSLASLRQI 354
           R +++   L           S+   L    ++  + LS N +       L  ++AS + +
Sbjct: 2   RFSIEGKSLKLDAITTEDEKSVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDL 61

Query: 355 SELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTN 414
                S+     +     +       L   +   PKL  + L DN F     + + +  +
Sbjct: 62  EIAEFSDIFTGRVKDEIPEAL---RLLLQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLS 118

Query: 415 LFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSF 474
                      N  +    G   +     L+ N+     PP                  +
Sbjct: 119 KHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEW 178

Query: 475 SYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNA 534
           +    S +L   +    N I      + L+  +           +     +     +  A
Sbjct: 179 AKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA 238

Query: 535 LGIYPDLQYIDLGDNQLSGVLTSNWGKC------TNLSNFRISGNRIKGGIPAEL----- 583
           L  +P+L+ + L D  LS    +             L   R+  N I+      L     
Sbjct: 239 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVID 298

Query: 584 GNLTYLQNLDIFDNQLT--GKIPAQLFRSSFLIRLNLRRNQLSD 625
             +  L  L++  N+ +    +  ++ R  F  R     ++L D
Sbjct: 299 EKMPDLLFLELNGNRFSEEDDVVDEI-REVFSTRGRGELDELDD 341

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]} Length = 162

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.1 bits (85), Expect = 0.002
 Identities = 29/144 (20%), Positives = 48/144 (33%), Gaps = 12/144 (8%)

Query: 151 QIPHQLSNLQNAWLLRIGANYL-EDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKL 209
           Q+   +S   +     +    L  DPD            L    ++            +L
Sbjct: 11  QLKLIMSKRYDGSQQALDLKGLRSDPD---LVAQNIDVVLNRRSSMAATLRIIEENIPEL 67

Query: 210 MFLDLSDNLIMGHIPIEQ-LTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKL 268
           + L+LS+N +     +   +    NL+ LNL+ N  + E   +     KL  L L  N L
Sbjct: 68  LSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSL 127

Query: 269 TGTIPDE-------IGLLSNLEIL 285
           + T  D+             L  L
Sbjct: 128 SDTFRDQSTYISAIRERFPKLLRL 151

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	641
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	100.0
d1ogqa_	313	Polygalacturonase inhibiting protein PGIP {Kidney	99.97
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d2omza2	384	Internalin A {Listeria monocytogenes [TaxId: 1639]	99.95
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.92
d1xkua_	305	Decorin {Cow (Bos taurus) [TaxId: 9913]}	99.91
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.9
d1ozna_	284	Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Huma	99.89
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.87
d1p9ag_	266	von Willebrand factor binding domain of glycoprote	99.85
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.81
d1jl5a_	353	Leucine rich effector protein YopM {Yersinia pesti	99.79
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.77
d1z7xw1	460	Ribonuclease inhibitor {Human (Homo sapiens) [TaxI	99.74
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.72
d1h6ua2	227	Internalin H {Listeria monocytogenes [TaxId: 1639]	99.71
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.67
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.67
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.67
d1xwdc1	242	Follicle-stimulating hormone receptor {Human (Homo	99.66
d1h6ta2	210	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d2omxa2	199	Internalin B {Listeria monocytogenes [TaxId: 1639]	99.65
d1w8aa_	192	Slit {Fruit fly (Drosophila melanogaster) [TaxId:	99.65
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.58
d2astb2	284	Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sa	99.57
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.53
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.52
d1a9na_	162	Splicesomal U2A' protein {Human (Homo sapiens) [Ta	99.51
d2ca6a1	344	Rna1p (RanGAP1), N-terminal domain {Fission yeast	99.49
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.45
d1dcea3	124	Rab geranylgeranyltransferase alpha-subunit, C-ter	99.45
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.27
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.26
d2ifga3	156	High affinity nerve growth factor receptor, N-term	99.22
d1m9la_	198	Outer arm dynein light chain 1 {Green algae (Chlam	99.2
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.44
d1koha1	162	mRNA export factor tap {Human (Homo sapiens) [TaxI	98.28
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.85
d1pgva_	167	Tropomodulin C-terminal domain {nematode (Caenorha	97.65
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.4
d1io0a_	166	Tropomodulin C-terminal domain {Chicken (Gallus ga	97.08

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=100.00  E-value=2.2e-36  Score=301.05  Aligned_cols=291  Identities=26%  Similarity=0.444  Sum_probs=197.8

Q ss_pred             cCcHHHHHHHHHHHhcCCCCC-CCCCCCCCCCCCCcc--ccceeeCCC---CCEEEEEcCCCCCccc--cCCcCCCCCCC
Q 036117           18 ISAQKEAKALLNWKSSLVSSS-LPSWTAINSNSGPCN--WNGIQCNEV---GSISEINLANSGLDGT--LDGFDFSAFPN   89 (641)
Q Consensus        18 ~~~~~~~~~l~~~~~~~~~~~-~~~W~~~~~~~~~c~--~~gv~c~~~---~~v~~l~l~~~~~~~~--~~~~~~~~l~~   89 (641)
                      -|.++|++||++||+++..+. +++|...   +|||.  |.||.|+..   +||++|+|+++++.|.  +| ..++++++
T Consensus         2 ~c~~~e~~aLl~~k~~~~~~~~l~sW~~~---~d~C~~~w~gv~C~~~~~~~~v~~L~L~~~~l~g~~~lp-~~l~~L~~   77 (313)
T d1ogqa_           2 LCNPQDKQALLQIKKDLGNPTTLSSWLPT---TDCCNRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIP-SSLANLPY   77 (313)
T ss_dssp             CSCHHHHHHHHHHHHHTTCCGGGTTCCTT---SCTTTTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECC-GGGGGCTT
T ss_pred             CCCHHHHHHHHHHHHHCCCCCcCCCCCCC---CCCCCCcCCCeEEeCCCCcEEEEEEECCCCCCCCCCCCC-hHHhcCcc
Confidence            488999999999999997665 7899754   79994  999999863   4799999999888763  45 66777777


Q ss_pred             CCEEECCC-CCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEec
Q 036117           90 LTALNLNM-NNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIG  168 (641)
Q Consensus        90 L~~L~L~~-n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~  168 (641)
                      |++|+|++ |.+.|.+|..++++++|++|++++|++.+..+..+..+.+|+++++++|.+.+.+|..+.+++++++++++
T Consensus        78 L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~l~~N~~~~~~p~~l~~l~~L~~l~l~  157 (313)
T d1ogqa_          78 LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSISSLPNLVGITFD  157 (313)
T ss_dssp             CSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEECC
T ss_pred             ccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccccccccccccCchhhccCcccceeecc
Confidence            77777775 66777777777777777777777777776666667777777777777777766677777777777777776


Q ss_pred             cccCCCCCCcccCCCCCCCEEEcCCCCCCCCchhhcCCCCC-cEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCccccc
Q 036117          169 ANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKL-MFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGE  247 (641)
Q Consensus       169 ~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~~~~L-~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~  247 (641)
                      +|.+.+..                       |..+..+.++ +.+++++|.+.+..+.. +..+.. ..++++.+...+.
T Consensus       158 ~n~l~~~i-----------------------p~~~~~l~~l~~~l~~~~n~l~~~~~~~-~~~l~~-~~l~l~~~~~~~~  212 (313)
T d1ogqa_         158 GNRISGAI-----------------------PDSYGSFSKLFTSMTISRNRLTGKIPPT-FANLNL-AFVDLSRNMLEGD  212 (313)
T ss_dssp             SSCCEEEC-----------------------CGGGGCCCTTCCEEECCSSEEEEECCGG-GGGCCC-SEEECCSSEEEEC
T ss_pred             cccccccc-----------------------cccccccccccccccccccccccccccc-cccccc-ccccccccccccc
Confidence            66665444                       4444444443 55555555555444432 233332 3566666666666


Q ss_pred             CCcccCCCCCCCEEEcCCCcCCccCCcccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCccCCCCCCcCCCCC
Q 036117          248 IPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFC  327 (641)
Q Consensus       248 ~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~  327 (641)
                      +|..+..+++++.+++.++.+.+.++ .+..+++|+.|++++|++++.+|..+.++++|++|++++|+++|.+|. ++.+
T Consensus       213 ~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~iP~-~~~L  290 (313)
T d1ogqa_         213 ASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQ-GGNL  290 (313)
T ss_dssp             CGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCC-STTG
T ss_pred             cccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCcccccCCC-cccC
Confidence            66666666666666666666664433 355666666666666666666666666666666666666666665553 4556


Q ss_pred             CCCCEEEccCcc
Q 036117          328 ANLTFLELSINN  339 (641)
Q Consensus       328 ~~L~~L~l~~n~  339 (641)
                      ++|+.+++++|+
T Consensus       291 ~~L~~l~l~~N~  302 (313)
T d1ogqa_         291 QRFDVSAYANNK  302 (313)
T ss_dssp             GGSCGGGTCSSS
T ss_pred             CCCCHHHhCCCc
Confidence            666666666665

>d1ogqa_ c.10.2.8 (A:) Polygalacturonase inhibiting protein PGIP {Kidney bean (Phaseolus vulgaris) [TaxId: 3885]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Polygalacturonase inhibiting protein PGIP
domain: Polygalacturonase inhibiting protein PGIP
species: Kidney bean (Phaseolus vulgaris) [TaxId: 3885]

Probab=99.97  E-value=4.5e-30  Score=255.05  Aligned_cols=253  Identities=32%  Similarity=0.480  Sum_probs=203.6

Q ss_pred             cceeecccccccc--cCCcCCCCCCCCCEEEccC-CcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEE
Q 036117          367 IISLQLQMNDLSG--KLPPEIGLLPKLEYLYLFD-NKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLS  443 (641)
Q Consensus       367 l~~l~l~~~~l~~--~~~~~l~~~~~L~~L~L~~-n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~  443 (641)
                      ++.++++++.+.|  .+|+.++.+++|++|++++ |+++|.+|..++++++|++|++++|.+.+..+..+..+++|++++
T Consensus        52 v~~L~L~~~~l~g~~~lp~~l~~L~~L~~L~Ls~~N~l~g~iP~~i~~L~~L~~L~Ls~N~l~~~~~~~~~~~~~L~~l~  131 (313)
T d1ogqa_          52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD  131 (313)
T ss_dssp             EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE
T ss_pred             EEEEECCCCCCCCCCCCChHHhcCccccccccccccccccccccccccccccchhhhccccccccccccccchhhhcccc
Confidence            3344455555554  3667777777888888875 677777888888888888888888888877777777888888888


Q ss_pred             ccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccccCCCCC-ceEeccCCcccCCCccccccCCCCcEEEC
Q 036117          444 LSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNL-IYLTANVNKLVGPIPESLWNCTGLTRVRL  522 (641)
Q Consensus       444 ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L-~~L~l~~n~~~~~~~~~l~~~~~L~~L~l  522 (641)
                      +++|.+.+.+|..+..++      .++.+++++|.+.+.+|..+..+..+ +.+++++|++.+..|..+.++..+ .+++
T Consensus       132 l~~N~~~~~~p~~l~~l~------~L~~l~l~~n~l~~~ip~~~~~l~~l~~~l~~~~n~l~~~~~~~~~~l~~~-~l~l  204 (313)
T d1ogqa_         132 FSYNALSGTLPPSISSLP------NLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLNLA-FVDL  204 (313)
T ss_dssp             CCSSEEESCCCGGGGGCT------TCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCCCS-EEEC
T ss_pred             cccccccccCchhhccCc------ccceeeccccccccccccccccccccccccccccccccccccccccccccc-cccc
Confidence            888888878888887777      78888888888888888887777665 778888888888888777776544 7888


Q ss_pred             CCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCccc
Q 036117          523 EQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGK  602 (641)
Q Consensus       523 ~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~  602 (641)
                      +++...+.+|..++.++.++.+++++|.+.+.++ .++.+++|+.|++++|+++|.+|..++++++|++|+|++|+++|.
T Consensus       205 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~l~~~~~-~~~~~~~L~~L~Ls~N~l~g~iP~~l~~L~~L~~L~Ls~N~l~g~  283 (313)
T d1ogqa_         205 SRNMLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGE  283 (313)
T ss_dssp             CSSEEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEE
T ss_pred             cccccccccccccccccccccccccccccccccc-ccccccccccccCccCeecccCChHHhCCCCCCEEECcCCccccc
Confidence            8888888888888889999999999999887655 577888999999999999999999999999999999999999998


Q ss_pred             CCccccCCCCCCEEeCcCCC-Cccc-Cc
Q 036117          603 IPAQLFRSSFLIRLNLRRNQ-LSDK-IP  628 (641)
Q Consensus       603 ip~~l~~~~~L~~l~l~~n~-l~~~-~p  628 (641)
                      +|. +.++++|+.+++++|+ ++|. +|
T Consensus       284 iP~-~~~L~~L~~l~l~~N~~l~g~plp  310 (313)
T d1ogqa_         284 IPQ-GGNLQRFDVSAYANNKCLCGSPLP  310 (313)
T ss_dssp             CCC-STTGGGSCGGGTCSSSEEESTTSS
T ss_pred             CCC-cccCCCCCHHHhCCCccccCCCCC
Confidence            985 5778889999999997 5664 55

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=6.6e-26  Score=231.93  Aligned_cols=209  Identities=26%  Similarity=0.327  Sum_probs=132.0

Q ss_pred             CCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCC
Q 036117          389 PKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRF  468 (641)
Q Consensus       389 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~  468 (641)
                      +.........|...  ....+..+++++.+++++|.+++..+  +..+++|+++++++|.+++ + +.+..+.      +
T Consensus       175 ~~~~~~~~~~~~~~--~~~~~~~l~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~-~~l~~l~------~  242 (384)
T d2omza2         175 TTLERLDISSNKVS--DISVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLT------N  242 (384)
T ss_dssp             TTCCEEECCSSCCC--CCGGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCT------T
T ss_pred             cccccccccccccc--cccccccccccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC-c-chhhccc------c
Confidence            33444444444332  22334556666666666666654322  3445666666666666652 2 2344444      6


Q ss_pred             ccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCC
Q 036117          469 LRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGD  548 (641)
Q Consensus       469 L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~  548 (641)
                      |+.+++++|.+++..  .+..++.|+.++++++++.+..  .+..++.++.+.+++|.+.+  ...+..+++++.|++++
T Consensus       243 L~~L~l~~n~l~~~~--~~~~~~~L~~L~l~~~~l~~~~--~~~~~~~l~~l~~~~n~l~~--~~~~~~~~~l~~L~ls~  316 (384)
T d2omza2         243 LTDLDLANNQISNLA--PLSGLTKLTELKLGANQISNIS--PLAGLTALTNLELNENQLED--ISPISNLKNLTYLTLYF  316 (384)
T ss_dssp             CSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCSC--CGGGGGCTTCSEEECCS
T ss_pred             cchhccccCccCCCC--cccccccCCEeeccCcccCCCC--cccccccccccccccccccc--ccccchhcccCeEECCC
Confidence            667777766665422  2556677777777777766432  25667777777777777764  23456677788888888


Q ss_pred             CcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCccccCCCCCCEEeCcCC
Q 036117          549 NQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRN  621 (641)
Q Consensus       549 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~~~L~~l~l~~n  621 (641)
                      |++++..  .+..+++|++|++++|++++ ++ .++++++|++|++++|++++..|  +..+++|++|+|++|
T Consensus       317 n~l~~l~--~l~~l~~L~~L~L~~n~l~~-l~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         317 NNISDIS--PVSSLTKLQRLFFANNKVSD-VS-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             SCCSCCG--GGGGCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCCCCc--ccccCCCCCEEECCCCCCCC-Ch-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            8777653  36777888888888887763 33 57778888888888888775433  667778888888776

>d2omza2 c.10.2.1 (A:33-416) Internalin A {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin A
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.95  E-value=1.7e-25  Score=228.86  Aligned_cols=187  Identities=27%  Similarity=0.339  Sum_probs=103.9

Q ss_pred             CCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCC
Q 036117          389 PKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRF  468 (641)
Q Consensus       389 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~  468 (641)
                      ++++.+++++|.+++..|  +..+++|++|++++|.+++ + ..+..+++|+.+++++|.+++..  .+..++      +
T Consensus       197 ~~~~~l~l~~n~i~~~~~--~~~~~~L~~L~l~~n~l~~-~-~~l~~l~~L~~L~l~~n~l~~~~--~~~~~~------~  264 (384)
T d2omza2         197 TNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKD-I-GTLASLTNLTDLDLANNQISNLA--PLSGLT------K  264 (384)
T ss_dssp             TTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCC-C-GGGGGCTTCSEEECCSSCCCCCG--GGTTCT------T
T ss_pred             cccceeeccCCccCCCCc--ccccCCCCEEECCCCCCCC-c-chhhcccccchhccccCccCCCC--cccccc------c
Confidence            334444444444443322  2233444444444444432 1 12334444444444444443221  122222      4


Q ss_pred             ccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCC
Q 036117          469 LRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGD  548 (641)
Q Consensus       469 L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~  548 (641)
                      |++|+++++++++. + .+..++.++.++++.|.+.+.  ..+..+++++.|++++|++.+..  .+..+++|++|++++
T Consensus       265 L~~L~l~~~~l~~~-~-~~~~~~~l~~l~~~~n~l~~~--~~~~~~~~l~~L~ls~n~l~~l~--~l~~l~~L~~L~L~~  338 (384)
T d2omza2         265 LTELKLGANQISNI-S-PLAGLTALTNLELNENQLEDI--SPISNLKNLTYLTLYFNNISDIS--PVSSLTKLQRLFFAN  338 (384)
T ss_dssp             CSEEECCSSCCCCC-G-GGTTCTTCSEEECCSSCCSCC--GGGGGCTTCSEEECCSSCCSCCG--GGGGCTTCCEEECCS
T ss_pred             CCEeeccCcccCCC-C-ccccccccccccccccccccc--cccchhcccCeEECCCCCCCCCc--ccccCCCCCEEECCC
Confidence            55555555544321 1 244455666666666665532  23566777777777777776543  256777888888888


Q ss_pred             CcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCC
Q 036117          549 NQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDN  597 (641)
Q Consensus       549 n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n  597 (641)
                      |++++. + .+.++++|++|++++|++++..|  ++++++|++|+|++|
T Consensus       339 n~l~~l-~-~l~~l~~L~~L~l~~N~l~~l~~--l~~l~~L~~L~L~~N  383 (384)
T d2omza2         339 NKVSDV-S-SLANLTNINWLSAGHNQISDLTP--LANLTRITQLGLNDQ  383 (384)
T ss_dssp             SCCCCC-G-GGGGCTTCCEEECCSSCCCBCGG--GTTCTTCSEEECCCE
T ss_pred             CCCCCC-h-hHcCCCCCCEEECCCCcCCCChh--hccCCCCCEeeCCCC
Confidence            877743 3 57778888888888888875543  778888888888876

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.92  E-value=4e-23  Score=203.63  Aligned_cols=272  Identities=25%  Similarity=0.319  Sum_probs=150.7

Q ss_pred             CCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEecc
Q 036117           90 LTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGA  169 (641)
Q Consensus        90 L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~  169 (641)
                      .++++-++.+++ .+|..+.  +++++|++++|+++...+.+|.++++|++|++++|.+....|..|.+           
T Consensus        12 ~~~~~C~~~~L~-~lP~~l~--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~-----------   77 (305)
T d1xkua_          12 LRVVQCSDLGLE-KVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAP-----------   77 (305)
T ss_dssp             TTEEECTTSCCC-SCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTT-----------
T ss_pred             CCEEEecCCCCC-ccCCCCC--CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhC-----------
Confidence            444555555554 3344332  34555555555555333334555555555555555555444444444           


Q ss_pred             ccCCCCCCcccCCCCCCCEEEcCCCCCCCCchhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCccc--cc
Q 036117          170 NYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFE--GE  247 (641)
Q Consensus       170 n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~--~~  247 (641)
                                   +++|++|++++|++..+|..  ....++.|++.+|.+. .++...+........++...+...  ..
T Consensus        78 -------------l~~L~~L~l~~n~l~~l~~~--~~~~l~~L~~~~n~l~-~l~~~~~~~~~~~~~l~~~~n~~~~~~~  141 (305)
T d1xkua_          78 -------------LVKLERLYLSKNQLKELPEK--MPKTLQELRVHENEIT-KVRKSVFNGLNQMIVVELGTNPLKSSGI  141 (305)
T ss_dssp             -------------CTTCCEEECCSSCCSBCCSS--CCTTCCEEECCSSCCC-BBCHHHHTTCTTCCEEECCSSCCCGGGB
T ss_pred             -------------CCccCEecccCCccCcCccc--hhhhhhhhhccccchh-hhhhhhhhccccccccccccccccccCC
Confidence                         44455555555544444432  2245556666665555 344444455556666666555322  23


Q ss_pred             CCcccCCCCCCCEEEcCCCcCCccCCcccCCCCcccEeeeecccccccCccccCCCCCCCeeeccCccCCCCCCcCCCCC
Q 036117          248 IPREIKTFPKLRHLKLGQNKLTGTIPDEIGLLSNLEILEFHENLFHGLIPSSLGNLRRLQRLNLKSAGLNSSIPKELGFC  327 (641)
Q Consensus       248 ~~~~l~~l~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~l~~~  327 (641)
                      .+..+..+++|+.+++++|.+. .++..  .+++|++|++++|...+..+..+..++.++.|++++|.+.+..+..+..+
T Consensus       142 ~~~~~~~l~~L~~l~l~~n~l~-~l~~~--~~~~L~~L~l~~n~~~~~~~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l  218 (305)
T d1xkua_         142 ENGAFQGMKKLSYIRIADTNIT-TIPQG--LPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGSLANT  218 (305)
T ss_dssp             CTTGGGGCTTCCEEECCSSCCC-SCCSS--CCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTTGGGS
T ss_pred             CccccccccccCccccccCCcc-ccCcc--cCCccCEEECCCCcCCCCChhHhhcccccccccccccccccccccccccc
Confidence            3445566667777777777665 33332  24667777777777666666666677777777777777766666666667


Q ss_pred             CCCCEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCc
Q 036117          328 ANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFS  402 (641)
Q Consensus       328 ~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~  402 (641)
                      ++|++|++++|+++ .+|..+..+++|++|++++|+++.+..     ..+.  .+......++|+.|++++|.+.
T Consensus       219 ~~L~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~-----~~f~--~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         219 PHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGS-----NDFC--PPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             TTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCT-----TSSS--CSSCCTTSCCCSEEECCSSSSC
T ss_pred             ccceeeeccccccc-ccccccccccCCCEEECCCCccCccCh-----hhcc--CcchhcccCCCCEEECCCCcCc
Confidence            77777777777776 456666667777777766666654311     1110  0122334566677777777654

>d1xkua_ c.10.2.7 (A:) Decorin {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Decorin
species: Cow (Bos taurus) [TaxId: 9913]

Probab=99.91  E-value=8.2e-23  Score=201.38  Aligned_cols=247  Identities=18%  Similarity=0.245  Sum_probs=135.8

Q ss_pred             CCCCeeeccCccCCCCCCcCCCCCCCCCEEEccCccccccCchhhhcCCCCCeEeCCcccccccceeecccccccccCCc
Q 036117          304 RRLQRLNLKSAGLNSSIPKELGFCANLTFLELSINNLTGSLPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPP  383 (641)
Q Consensus       304 ~~L~~L~l~~~~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~  383 (641)
                      +++++|++++|++....+..+..+++|++|++++|.+....|..+..++.|+.|++++|+++.+              |.
T Consensus        31 ~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~l~~n~~~~i~~~~f~~l~~L~~L~l~~n~l~~l--------------~~   96 (305)
T d1xkua_          31 PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSKNQLKEL--------------PE   96 (305)
T ss_dssp             TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCSBC--------------CS
T ss_pred             CCCCEEECcCCcCCCcChhHhhccccccccccccccccccchhhhhCCCccCEecccCCccCcC--------------cc
Confidence            3455555555555444444455555666666666665554555555566666666555554432              11


Q ss_pred             CCCCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCC--ccCcccccCCCCCCEEEccCCcCcccCCcchhcCC
Q 036117          384 EIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFN--GSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSK  461 (641)
Q Consensus       384 ~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~--~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~  461 (641)
                      .  ..+.++.|++.+|.+.+..+..+.....+..++...|...  ...+..+..+++|+++++++|.+. .+|..+  ..
T Consensus        97 ~--~~~~l~~L~~~~n~l~~l~~~~~~~~~~~~~l~~~~n~~~~~~~~~~~~~~l~~L~~l~l~~n~l~-~l~~~~--~~  171 (305)
T d1xkua_          97 K--MPKTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNIT-TIPQGL--PP  171 (305)
T ss_dssp             S--CCTTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCC-SCCSSC--CT
T ss_pred             c--hhhhhhhhhccccchhhhhhhhhhccccccccccccccccccCCCccccccccccCccccccCCcc-ccCccc--CC
Confidence            1  2345677777777777666666666667777777666443  223445666667777777776654 233221  11


Q ss_pred             CCCCCCCccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCC
Q 036117          462 SDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDL  541 (641)
Q Consensus       462 ~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L  541 (641)
                            ++++|++++|..++..                        +..+.+++.+++|++++|.+.+..+..+..+++|
T Consensus       172 ------~L~~L~l~~n~~~~~~------------------------~~~~~~~~~l~~L~~s~n~l~~~~~~~~~~l~~L  221 (305)
T d1xkua_         172 ------SLTELHLDGNKITKVD------------------------AASLKGLNNLAKLGLSFNSISAVDNGSLANTPHL  221 (305)
T ss_dssp             ------TCSEEECTTSCCCEEC------------------------TGGGTTCTTCCEEECCSSCCCEECTTTGGGSTTC
T ss_pred             ------ccCEEECCCCcCCCCC------------------------hhHhhccccccccccccccccccccccccccccc
Confidence                  4555555555544444                        4444455555555555555555445555555555


Q ss_pred             cEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCC------ccccCCCCCCEEeCCCCcCc
Q 036117          542 QYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIP------AELGNLTYLQNLDIFDNQLT  600 (641)
Q Consensus       542 ~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p------~~l~~l~~L~~L~L~~n~l~  600 (641)
                      ++|+|++|+++ .+|..+..+++|++|++++|+++....      .....+.+|+.|+|++|++.
T Consensus       222 ~~L~L~~N~L~-~lp~~l~~l~~L~~L~Ls~N~i~~i~~~~f~~~~~~~~~~~L~~L~L~~N~~~  285 (305)
T d1xkua_         222 RELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQ  285 (305)
T ss_dssp             CEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSC
T ss_pred             eeeeccccccc-ccccccccccCCCEEECCCCccCccChhhccCcchhcccCCCCEEECCCCcCc
Confidence            55555555555 334455555566666666655553222      22344567777777777764

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.90  E-value=5.4e-23  Score=200.24  Aligned_cols=238  Identities=19%  Similarity=0.169  Sum_probs=152.9

Q ss_pred             CCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCC-cCcccCCcchhcCCCCCCCC
Q 036117          389 PKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSN-QLTGTLPPEIGNSKSDFGPR  467 (641)
Q Consensus       389 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n-~l~~~~~~~~~~~~~~~~~~  467 (641)
                      +++++|+|++|+++...+..|.++++|++|++++|.+.+..+..+..++.++.+++..+ .+....+..+..++      
T Consensus        32 ~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~l~------  105 (284)
T d1ozna_          32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLG------  105 (284)
T ss_dssp             TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCT------
T ss_pred             CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccccccccccccccccccccchhhcccc------
Confidence            34566666666666555555666666666666666666555555566666666655433 33333344455554      


Q ss_pred             CccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCC
Q 036117          468 FLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLG  547 (641)
Q Consensus       468 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls  547 (641)
                      +|++|++++|.+....+..+...+.|+.+++++|++.+..+.+|..+++|+.|++++|++.+..+..|..+++|+.++++
T Consensus       106 ~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l~~l~~~~f~~l~~L~~l~l~  185 (284)
T d1ozna_         106 RLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLH  185 (284)
T ss_dssp             TCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred             cCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcccccchhhhccccccchhhhh
Confidence            66667776666654445555566677777777777765555666677777777777777776666677777777777777


Q ss_pred             CCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCccccCCCCCCEEeCcCCCCcccC
Q 036117          548 DNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKI  627 (641)
Q Consensus       548 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~~~L~~l~l~~n~l~~~~  627 (641)
                      +|++++..|..|..+++|++|++++|.+.+..|..|+.+++|++|++++|++.+..+. .+-...++.+....+++....
T Consensus       186 ~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~~-~~l~~~l~~~~~~~~~~~C~~  264 (284)
T d1ozna_         186 QNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRA-RPLWAWLQKFRGSSSEVPCSL  264 (284)
T ss_dssp             SSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGG-HHHHHHHHHCCSEECCCBEEE
T ss_pred             hccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCccc-hHHHHHHHhCcCCCCceEeCC
Confidence            7777777777777777777777777777766666777777777777777777644331 111133455555666666666


Q ss_pred             cccccC
Q 036117          628 PAEIGK  633 (641)
Q Consensus       628 p~~~~~  633 (641)
                      |..+.+
T Consensus       265 p~~l~g  270 (284)
T d1ozna_         265 PQRLAG  270 (284)
T ss_dssp             SGGGTT
T ss_pred             chHHcC
Confidence            666655

>d1ozna_ c.10.2.7 (A:) Reticulon 4 receptor (Nogo-66 receptor, Ngr) {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Reticulon 4 receptor (Nogo-66 receptor, Ngr)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.89  E-value=4.4e-22  Score=193.73  Aligned_cols=227  Identities=19%  Similarity=0.141  Sum_probs=196.3

Q ss_pred             EEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEE
Q 036117          393 YLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNV  472 (641)
Q Consensus       393 ~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L  472 (641)
                      .++.++++++ .+|..+.  +.+++|+|++|.++...+..|.+++.|+++++++|.+.+..+..+....      .++.+
T Consensus        15 ~v~c~~~~L~-~iP~~ip--~~~~~L~Ls~N~i~~i~~~~f~~l~~L~~L~ls~n~l~~i~~~~~~~~~------~~~~l   85 (284)
T d1ozna_          15 TTSCPQQGLQ-AVPVGIP--AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLA------LLEQL   85 (284)
T ss_dssp             EEECCSSCCS-SCCTTCC--TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT------TCCEE
T ss_pred             EEEcCCCCCC-ccCCCCC--CCCCEEECcCCcCCCCCHHHhhccccccccccccccccccccccccccc------ccccc
Confidence            4566666666 5565443  5789999999999966667899999999999999999877766666665      78888


Q ss_pred             EccC-CcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcc
Q 036117          473 SFSY-NNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQL  551 (641)
Q Consensus       473 ~ls~-n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~  551 (641)
                      .... +.+....+..+.++++|++|++++|.+....+..+..+++|+.+++++|++++..+..|..+++|+.|++++|++
T Consensus        86 ~~~~~~~~~~l~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~L~~l~l~~N~l~~i~~~~f~~~~~L~~L~l~~N~l  165 (284)
T d1ozna_          86 DLSDNAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRI  165 (284)
T ss_dssp             ECCSCTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred             ccccccccccccchhhcccccCCEEecCCcccccccccccchhcccchhhhccccccccChhHhccccchhhcccccCcc
Confidence            7764 455555577789999999999999999877777888899999999999999987788899999999999999999


Q ss_pred             cccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCccccCCCCCCEEeCcCCCCcccCc
Q 036117          552 SGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIP  628 (641)
Q Consensus       552 ~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~~~L~~l~l~~n~l~~~~p  628 (641)
                      ++..+..+..+++|+++++++|++++..|..|+++++|++|++++|.+.+..|..+..+++|+.|++++|++....+
T Consensus       166 ~~l~~~~f~~l~~L~~l~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~i~~~~~~~~~~~~~L~~L~l~~N~l~C~C~  242 (284)
T d1ozna_         166 SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCR  242 (284)
T ss_dssp             CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGG
T ss_pred             cccchhhhccccccchhhhhhccccccChhHhhhhhhcccccccccccccccccccccccccCEEEecCCCCCCCcc
Confidence            99889999999999999999999999999999999999999999999997777888899999999999999976543

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.87  E-value=3.5e-21  Score=185.12  Aligned_cols=200  Identities=20%  Similarity=0.181  Sum_probs=142.3

Q ss_pred             CCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCC
Q 036117          388 LPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPR  467 (641)
Q Consensus       388 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~  467 (641)
                      ...+.+++.+++.++ .+|..+.  +++++|+|++|.+++..+..|.++++|++|++++|.++. +|. +..++      
T Consensus         9 ~~~~~~v~C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~~-l~~-~~~l~------   77 (266)
T d1p9ag_           9 VASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQV-DGTLP------   77 (266)
T ss_dssp             STTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EEC-CSCCT------
T ss_pred             cCCCeEEEccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhccccccccccccccccc-ccc-ccccc------
Confidence            455667788888887 4565443  578888888888886555678888888888888888763 322 23333      


Q ss_pred             CccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCC
Q 036117          468 FLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLG  547 (641)
Q Consensus       468 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls  547 (641)
                      +|++|++++|+++ ..+..+..++.|+.|++++|.+.+..+..+..+.+++.|++++|.+....+..+..++.++.++++
T Consensus        78 ~L~~L~Ls~N~l~-~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~  156 (266)
T d1p9ag_          78 VLGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLA  156 (266)
T ss_dssp             TCCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred             ccccccccccccc-ccccccccccccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccc
Confidence            7888888888776 345566667777777777777766666666667777777777777776666666667777777777


Q ss_pred             CCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCc
Q 036117          548 DNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLT  600 (641)
Q Consensus       548 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  600 (641)
                      +|++++..+..+..+++|++|+|++|+++ .+|..+..+++|+.|+|++|++.
T Consensus       157 ~N~l~~~~~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~  208 (266)
T d1p9ag_         157 NNNLTELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWL  208 (266)
T ss_dssp             TSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBC
T ss_pred             cccccccCccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCC
Confidence            77777666666777777777777777776 66666667777777777777665

>d1p9ag_ c.10.2.7 (G:) von Willebrand factor binding domain of glycoprotein Ib alpha {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: von Willebrand factor binding domain of glycoprotein Ib alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.85  E-value=2.9e-20  Score=178.55  Aligned_cols=193  Identities=23%  Similarity=0.188  Sum_probs=160.0

Q ss_pred             cccccccccCCcCCCCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcc
Q 036117          372 LQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTG  451 (641)
Q Consensus       372 l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~  451 (641)
                      .++++++ .+|+.+.  +++++|+|++|++++..+..|..+++|++|++++|.++ .++ .+..+++|++|++++|++.+
T Consensus        17 C~~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~l~~~~f~~l~~L~~L~L~~N~l~-~l~-~~~~l~~L~~L~Ls~N~l~~   91 (266)
T d1p9ag_          17 CDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELT-KLQ-VDGTLPVLGTLDLSHNQLQS   91 (266)
T ss_dssp             CTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCC-EEE-CCSCCTTCCEEECCSSCCSS
T ss_pred             ccCCCCC-eeCcCcC--cCCCEEECcCCcCCCcCHHHhhcccccccccccccccc-ccc-cccccccccccccccccccc
Confidence            3333444 3465543  57999999999998777788999999999999999987 344 35788999999999999873


Q ss_pred             cCCcchhcCCCCCCCCCccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCcccc
Q 036117          452 TLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDI  531 (641)
Q Consensus       452 ~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~  531 (641)
                       .+..+..++      +|+.|++++|.+....+..+..+.+++.+++++|.+....+..+..++.++.+++++|++++..
T Consensus        92 -~~~~~~~l~------~L~~L~l~~~~~~~~~~~~~~~l~~l~~L~l~~n~l~~l~~~~~~~l~~l~~l~l~~N~l~~~~  164 (266)
T d1p9ag_          92 -LPLLGQTLP------ALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELP  164 (266)
T ss_dssp             -CCCCTTTCT------TCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCC
T ss_pred             -ccccccccc------ccccccccccccceeeccccccccccccccccccccceeccccccccccchhcccccccccccC
Confidence             455666666      8999999999988766777788899999999999998777777888999999999999999888


Q ss_pred             CcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcc
Q 036117          532 TNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKG  577 (641)
Q Consensus       532 ~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~  577 (641)
                      +..|+.+++|++|+|++|+++ .+|+.+..+++|+.|+|++|++..
T Consensus       165 ~~~~~~l~~L~~L~Ls~N~L~-~lp~~~~~~~~L~~L~L~~Np~~C  209 (266)
T d1p9ag_         165 AGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC  209 (266)
T ss_dssp             TTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred             ccccccccccceeecccCCCc-ccChhHCCCCCCCEEEecCCCCCC
Confidence            888899999999999999998 778888889999999999998863

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.81  E-value=1.8e-17  Score=166.34  Aligned_cols=97  Identities=31%  Similarity=0.349  Sum_probs=60.9

Q ss_pred             CCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCC-CCCcEEEe
Q 036117           89 NLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNL-QNAWLLRI  167 (641)
Q Consensus        89 ~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l-~~L~~L~l  167 (641)
                      ++++|||+++.++ .+|+.   .++|++|++++|+++ .+|..+   .+|++|++++|.++. ++    .+ +.|++|++
T Consensus        39 ~l~~LdLs~~~L~-~lp~~---~~~L~~L~Ls~N~l~-~lp~~~---~~L~~L~l~~n~l~~-l~----~lp~~L~~L~L  105 (353)
T d1jl5a_          39 QAHELELNNLGLS-SLPEL---PPHLESLVASCNSLT-ELPELP---QSLKSLLVDNNNLKA-LS----DLPPLLEYLGV  105 (353)
T ss_dssp             TCSEEECTTSCCS-CCCSC---CTTCSEEECCSSCCS-SCCCCC---TTCCEEECCSSCCSC-CC----SCCTTCCEEEC
T ss_pred             CCCEEEeCCCCCC-CCCCC---CCCCCEEECCCCCCc-ccccch---hhhhhhhhhhcccch-hh----hhccccccccc
Confidence            6788888888887 56653   467888888888887 566543   567888888877662 22    12 24666666


Q ss_pred             ccccCCCCCCcccCCCCCCCEEEcCCCCCCCCc
Q 036117          168 GANYLEDPDPVKFKGMASLTDLWLDYNLLEKFP  200 (641)
Q Consensus       168 ~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~  200 (641)
                      ++|.+....  .+..+++|++|+++++.+...+
T Consensus       106 ~~n~l~~lp--~~~~l~~L~~L~l~~~~~~~~~  136 (353)
T d1jl5a_         106 SNNQLEKLP--ELQNSSFLKIIDVDNNSLKKLP  136 (353)
T ss_dssp             CSSCCSSCC--CCTTCTTCCEEECCSSCCSCCC
T ss_pred             ccccccccc--chhhhccceeeccccccccccc
Confidence            666655443  2344555555555555554433

>d1jl5a_ c.10.2.6 (A:) Leucine rich effector protein YopM {Yersinia pestis [TaxId: 632]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Leucine rich effector protein YopM
domain: Leucine rich effector protein YopM
species: Yersinia pestis [TaxId: 632]

Probab=99.79  E-value=4e-16  Score=156.21  Aligned_cols=183  Identities=22%  Similarity=0.279  Sum_probs=81.4

Q ss_pred             CCCCCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCC
Q 036117          385 IGLLPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDF  464 (641)
Q Consensus       385 l~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~  464 (641)
                      +..++.++.+++.+|...... .   .....+.+...++.+. .++ .+..++.++.+++++|... .++....      
T Consensus       158 l~~l~~l~~L~l~~n~~~~~~-~---~~~~~~~l~~~~~~~~-~~~-~~~~l~~L~~l~l~~n~~~-~~~~~~~------  224 (353)
T d1jl5a_         158 LQNLPFLTAIYADNNSLKKLP-D---LPLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK-TLPDLPP------  224 (353)
T ss_dssp             CTTCTTCCEEECCSSCCSSCC-C---CCTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS-SCCSCCT------
T ss_pred             ccccccceecccccccccccc-c---cccccccccccccccc-ccc-ccccccccccccccccccc-ccccccc------
Confidence            344555666666665544221 1   1122333444433332 222 2345566666666666543 2222111      


Q ss_pred             CCCCccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccC-CCCcEEECCCCcCccccCcccCCCCCCcE
Q 036117          465 GPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNC-TGLTRVRLEQNRLDGDITNALGIYPDLQY  543 (641)
Q Consensus       465 ~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~  543 (641)
                         ++..+.+.++.+... +.   ....+...++..+.+.+     +..+ ......++..+.+.+.    ...+++|++
T Consensus       225 ---~l~~~~~~~~~~~~~-~~---~~~~l~~~~~~~~~~~~-----l~~l~~~~~~~~~~~~~~~~~----~~~~~~L~~  288 (353)
T d1jl5a_         225 ---SLEALNVRDNYLTDL-PE---LPQSLTFLDVSENIFSG-----LSELPPNLYYLNASSNEIRSL----CDLPPSLEE  288 (353)
T ss_dssp             ---TCCEEECCSSCCSCC-CC---CCTTCCEEECCSSCCSE-----ESCCCTTCCEEECCSSCCSEE----CCCCTTCCE
T ss_pred             ---ccccccccccccccc-cc---ccccccccccccccccc-----cccccchhcccccccCccccc----cccCCCCCE
Confidence               355555555554321 11   12233344443333221     1111 2233444554444422    123456666


Q ss_pred             EeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCc
Q 036117          544 IDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPA  605 (641)
Q Consensus       544 L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~  605 (641)
                      |++++|+++ .+|..   +++|+.|++++|+++ .+|..   +++|++|++++|+++ .+|.
T Consensus       289 L~Ls~N~l~-~lp~~---~~~L~~L~L~~N~L~-~l~~~---~~~L~~L~L~~N~L~-~lp~  341 (353)
T d1jl5a_         289 LNVSNNKLI-ELPAL---PPRLERLIASFNHLA-EVPEL---PQNLKQLHVEYNPLR-EFPD  341 (353)
T ss_dssp             EECCSSCCS-CCCCC---CTTCCEEECCSSCCS-CCCCC---CTTCCEEECCSSCCS-SCCC
T ss_pred             EECCCCccC-ccccc---cCCCCEEECCCCcCC-ccccc---cCCCCEEECcCCcCC-CCCc
Confidence            666666655 33322   345666666666665 34432   345666666666654 4553

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=9.1e-21  Score=198.05  Aligned_cols=109  Identities=19%  Similarity=0.203  Sum_probs=49.1

Q ss_pred             CCCEEEcCCCCCCCC--chhhcCCCCCcEEEeeCCcCCCCCC---hhhhcCCCCCcEEeccCCcccccC----CcccC-C
Q 036117          185 SLTDLWLDYNLLEKF--PSFIAECSKLMFLDLSDNLIMGHIP---IEQLTHLENLEYLNLTKNSFEGEI----PREIK-T  254 (641)
Q Consensus       185 ~L~~L~l~~~~~~~l--~~~l~~~~~L~~L~l~~~~~~~~~~---~~~l~~l~~L~~L~l~~n~~~~~~----~~~l~-~  254 (641)
                      +|++|++++++++..  ...+..+++++.|++++|.++..-.   ...+..+++|++|++++|.++...    ...+. .
T Consensus         3 ~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~~   82 (460)
T d1z7xw1           3 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQTP   82 (460)
T ss_dssp             EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCST
T ss_pred             CCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhcC
Confidence            355666666655332  3334445555666666665541100   112345555556666555554211    11111 1


Q ss_pred             CCCCCEEEcCCCcCCcc----CCcccCCCCcccEeeeeccccc
Q 036117          255 FPKLRHLKLGQNKLTGT----IPDEIGLLSNLEILEFHENLFH  293 (641)
Q Consensus       255 l~~L~~L~L~~~~l~~~----~~~~l~~~~~L~~L~l~~n~~~  293 (641)
                      ..+|++|++++|.+++.    ++..+..+++|++|++++|.+.
T Consensus        83 ~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~  125 (460)
T d1z7xw1          83 SCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLG  125 (460)
T ss_dssp             TCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCH
T ss_pred             CCCCCEEECCCCCccccccccccchhhccccccccccccccch
Confidence            23455555555555432    1222344455555555555443

>d1z7xw1 c.10.1.1 (W:1-460) Ribonuclease inhibitor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Ribonuclease inhibitor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.74  E-value=3.6e-20  Score=193.42  Aligned_cols=385  Identities=18%  Similarity=0.156  Sum_probs=232.8

Q ss_pred             CCCcEEeccCCcccccC-CcccCCCCCCCEEEcCCCcCCcc----CCcccCCCCcccEeeeecccccccC----ccccC-
Q 036117          232 ENLEYLNLTKNSFEGEI-PREIKTFPKLRHLKLGQNKLTGT----IPDEIGLLSNLEILEFHENLFHGLI----PSSLG-  301 (641)
Q Consensus       232 ~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~L~~~~l~~~----~~~~l~~~~~L~~L~l~~n~~~~~~----~~~l~-  301 (641)
                      .+|++||++++++++.. ...+..+++++.|+|++|.++..    +...+..+++|++|++++|.++...    ...+. 
T Consensus         2 ~~l~~ld~~~~~i~~~~~~~l~~~l~~l~~L~L~~~~i~~~~~~~l~~~L~~~~~L~~LdLs~N~i~~~~~~~l~~~l~~   81 (460)
T d1z7xw1           2 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQT   81 (460)
T ss_dssp             EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTCS
T ss_pred             CCCCEEEeeCCcCChHHHHHHHHhCCCCCEEEeCCCCCCHHHHHHHHHHHhcCCCCCEEECcCCcCChHHHHHHHHHHhc
Confidence            35789999999887532 33456678889999999987632    2334567888999999888875321    12222 


Q ss_pred             CCCCCCeeeccCccCCCC----CCcCCCCCCCCCEEEccCccccccCchhhh----c-CCCCCeEeCCcccccccceeec
Q 036117          302 NLRRLQRLNLKSAGLNSS----IPKELGFCANLTFLELSINNLTGSLPLSLA----S-LRQISELGISNNQLSEIISLQL  372 (641)
Q Consensus       302 ~l~~L~~L~l~~~~~~~~----~~~~l~~~~~L~~L~l~~n~l~~~~~~~l~----~-~~~L~~L~l~~n~~~~l~~l~l  372 (641)
                      ...+|++|++++|.+++.    ++..+..+++|++|++++|.+.......+.    . .............+....    
T Consensus        82 ~~~~L~~L~L~~n~it~~~~~~l~~~l~~~~~L~~L~L~~N~i~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~----  157 (460)
T d1z7xw1          82 PSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAAS----  157 (460)
T ss_dssp             TTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGG----
T ss_pred             CCCCCCEEECCCCCccccccccccchhhccccccccccccccchhhhhhhhhhcccccccccccccccccccchhh----
Confidence            234688888888877543    234566778888888888877643222221    1 111222222222111000    


Q ss_pred             ccccccccCCcCCCCCCCCCEEEccCCcCcCCch----hhh-hCCCCCCeEecccCcCCcc----CcccccCCCCCCEEE
Q 036117          373 QMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGPIP----QQI-GNLTNLFDLQLANNFFNGS----IPSTIGNLSSLVKLS  443 (641)
Q Consensus       373 ~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~~~----~~~-~~l~~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~  443 (641)
                           ...+...+.....++.++++++.......    ..+ ........+++..+.+...    ....+...+.++.++
T Consensus       158 -----~~~~~~~l~~~~~~~~~~ls~~~~~~~~~~~~~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~l~  232 (460)
T d1z7xw1         158 -----CEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELA  232 (460)
T ss_dssp             -----HHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEE
T ss_pred             -----hcccccccccccccccccccccccccccccccccccccccccccccccccccccchhhhcccccccccccccccc
Confidence                 00000112234567788887776543211    111 1233556677777665421    122344567888888


Q ss_pred             ccCCcCcccC-----CcchhcCCCCCCCCCccEEEccCCccccc----CCccccCCCCCceEeccCCcccCCCccc----
Q 036117          444 LSSNQLTGTL-----PPEIGNSKSDFGPRFLRNVSFSYNNFSGK----LPPGICRGGNLIYLTANVNKLVGPIPES----  510 (641)
Q Consensus       444 ls~n~l~~~~-----~~~~~~~~~~~~~~~L~~L~ls~n~l~~~----~~~~~~~~~~L~~L~l~~n~~~~~~~~~----  510 (641)
                      +++|.+....     +......      ..++.+++++|.+...    ....+...+.++.+++++|.+.......    
T Consensus       233 ~~~n~~~~~~~~~~~~~~~~~~------~~l~~l~l~~n~i~~~~~~~~~~~l~~~~~l~~l~l~~n~i~~~~~~~l~~~  306 (460)
T d1z7xw1         233 LGSNKLGDVGMAELCPGLLHPS------SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCET  306 (460)
T ss_dssp             CCSSBCHHHHHHHHHHHHTSTT------CCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHH
T ss_pred             hhhccccccccchhhccccccc------ccccccccccccccccccccccccccccccccccccccccccccccchhhcc
Confidence            8888764321     1111112      2688888888877543    2233456778888888888875432221    


Q ss_pred             c-ccCCCCcEEECCCCcCccccC----cccCCCCCCcEEeCCCCcccccCC----hhhh-cCCCCCEEeCcCCcCccc--
Q 036117          511 L-WNCTGLTRVRLEQNRLDGDIT----NALGIYPDLQYIDLGDNQLSGVLT----SNWG-KCTNLSNFRISGNRIKGG--  578 (641)
Q Consensus       511 l-~~~~~L~~L~l~~n~l~~~~~----~~~~~l~~L~~L~Ls~n~~~~~~~----~~~~-~l~~L~~L~L~~n~l~~~--  578 (641)
                      + .....|+.+++++|.+.....    ..+...++|++|+|++|++++...    +.+. ..+.|++|+|++|++++.  
T Consensus       307 l~~~~~~L~~l~l~~~~l~~~~~~~l~~~~~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~L~Ls~n~i~~~~~  386 (460)
T d1z7xw1         307 LLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSC  386 (460)
T ss_dssp             HTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHH
T ss_pred             ccccccccccccccccchhhhhhhhcccccccccchhhhheeeecccCcccchhhhhhhcccCCCCEEECCCCCCChHHH
Confidence            1 234678899999988875432    233456789999999998875422    2332 356799999999998643  


Q ss_pred             --CCccccCCCCCCEEeCCCCcCcccCCccc----c-CCCCCCEEeCcCCCCcccCcccc
Q 036117          579 --IPAELGNLTYLQNLDIFDNQLTGKIPAQL----F-RSSFLIRLNLRRNQLSDKIPAEI  631 (641)
Q Consensus       579 --~p~~l~~l~~L~~L~L~~n~l~~~ip~~l----~-~~~~L~~l~l~~n~l~~~~p~~~  631 (641)
                        ++..+..+++|++|+|++|+++......+    . ....|+.|++++|++.+..+..+
T Consensus       387 ~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~l~~~l~~~~~~L~~l~l~~~~~~~~~~~~l  446 (460)
T d1z7xw1         387 SSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQLVLYDIYWSEEMEDRL  446 (460)
T ss_dssp             HHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCEEECTTCCCCHHHHHHH
T ss_pred             HHHHHHHhcCCCCCEEECCCCcCCHHHHHHHHHHHHhCCCccCEEECCCCCCCHHHHHHH
Confidence              44556677899999999999876533333    2 23479999999999886665444

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.72  E-value=4.9e-17  Score=151.84  Aligned_cols=186  Identities=23%  Similarity=0.357  Sum_probs=83.0

Q ss_pred             CCCCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCC
Q 036117          388 LPKLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPR  467 (641)
Q Consensus       388 ~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~  467 (641)
                      +.+|++|++.+|.++..  ..+..+++|++|++++|.+.+..+  +..+++++++++++|.++ .+              
T Consensus        40 l~~L~~L~l~~~~i~~l--~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~-~i--------------  100 (227)
T d1h6ua2          40 LDGITTLSAFGTGVTTI--EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLK-NV--------------  100 (227)
T ss_dssp             HHTCCEEECTTSCCCCC--TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCS-CC--------------
T ss_pred             cCCcCEEECCCCCCCcc--hhHhcCCCCcEeecCCceeecccc--cccccccccccccccccc-cc--------------
Confidence            34455555555555422  234455555555555555543211  444555555555555443 11              


Q ss_pred             CccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCC
Q 036117          468 FLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLG  547 (641)
Q Consensus       468 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls  547 (641)
                                       ..+..++.|+.++++++...+..  .+...+.+..+.++++.+....  .+..+++|+.|+++
T Consensus       101 -----------------~~l~~l~~L~~l~l~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~--~~~~~~~L~~L~l~  159 (227)
T d1h6ua2         101 -----------------SAIAGLQSIKTLDLTSTQITDVT--PLAGLSNLQVLYLDLNQITNIS--PLAGLTNLQYLSIG  159 (227)
T ss_dssp             -----------------GGGTTCTTCCEEECTTSCCCCCG--GGTTCTTCCEEECCSSCCCCCG--GGGGCTTCCEEECC
T ss_pred             -----------------ccccccccccccccccccccccc--hhccccchhhhhchhhhhchhh--hhcccccccccccc
Confidence                             12333444444444444333211  1233344444454444443221  13344455555555


Q ss_pred             CCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCccccCCCCCCEEeCc
Q 036117          548 DNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLR  619 (641)
Q Consensus       548 ~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~~~L~~l~l~  619 (641)
                      +|.+.+..  .++++++|++|++++|++++ ++ .++++++|++|+|++|+++ .+| .+..+++|+.|+++
T Consensus       160 ~n~~~~~~--~l~~l~~L~~L~Ls~n~l~~-l~-~l~~l~~L~~L~Ls~N~lt-~i~-~l~~l~~L~~L~ls  225 (227)
T d1h6ua2         160 NAQVSDLT--PLANLSKLTTLKADDNKISD-IS-PLASLPNLIEVHLKNNQIS-DVS-PLANTSNLFIVTLT  225 (227)
T ss_dssp             SSCCCCCG--GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCCEEECTTSCCC-BCG-GGTTCTTCCEEEEE
T ss_pred             ccccccch--hhcccccceecccCCCccCC-Ch-hhcCCCCCCEEECcCCcCC-CCc-ccccCCCCCEEEee
Confidence            55444321  24445555555555555542 22 2445555555555555554 233 24445555555544

>d1h6ua2 c.10.2.1 (A:36-262) Internalin H {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin H
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.71  E-value=8.4e-17  Score=150.22  Aligned_cols=81  Identities=23%  Similarity=0.345  Sum_probs=37.6

Q ss_pred             CCCCCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcE
Q 036117           85 SAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWL  164 (641)
Q Consensus        85 ~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~  164 (641)
                      +.+.+|++|++.+|++++ + ..++.+++|++|++++|.+++..|  +..+++|+++++++|.++. + ..+.++++|++
T Consensus        38 ~~l~~L~~L~l~~~~i~~-l-~~l~~l~~L~~L~ls~n~i~~~~~--l~~l~~l~~l~~~~n~~~~-i-~~l~~l~~L~~  111 (227)
T d1h6ua2          38 ADLDGITTLSAFGTGVTT-I-EGVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKN-V-SAIAGLQSIKT  111 (227)
T ss_dssp             HHHHTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSC-C-GGGTTCTTCCE
T ss_pred             HHcCCcCEEECCCCCCCc-c-hhHhcCCCCcEeecCCceeecccc--ccccccccccccccccccc-c-ccccccccccc
Confidence            334455555555555542 2 234555555555555555543221  4455555555555554432 1 12344444444


Q ss_pred             EEecccc
Q 036117          165 LRIGANY  171 (641)
Q Consensus       165 L~l~~n~  171 (641)
                      ++++++.
T Consensus       112 l~l~~~~  118 (227)
T d1h6ua2         112 LDLTSTQ  118 (227)
T ss_dssp             EECTTSC
T ss_pred             ccccccc
Confidence            4444443

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=6.3e-16  Score=140.70  Aligned_cols=148  Identities=24%  Similarity=0.343  Sum_probs=71.7

Q ss_pred             CCCCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEE
Q 036117           86 AFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLL  165 (641)
Q Consensus        86 ~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L  165 (641)
                      .++++++|+++++.+.. + +.++.+++|++|++++|++++. + .++++++|++|++++|.+... + .+.++++|+++
T Consensus        38 ~l~~l~~L~l~~~~i~~-l-~~l~~l~nL~~L~Ls~N~l~~~-~-~l~~l~~L~~L~l~~n~~~~~-~-~l~~l~~L~~L  111 (199)
T d2omxa2          38 DLDQVTTLQADRLGIKS-I-DGVEYLNNLTQINFSNNQLTDI-T-PLKNLTKLVDILMNNNQIADI-T-PLANLTNLTGL  111 (199)
T ss_dssp             HHTTCCEEECTTSCCCC-C-TTGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCCC-G-GGTTCTTCSEE
T ss_pred             HhcCCCEEECCCCCCCC-c-cccccCCCcCcCccccccccCc-c-cccCCcccccccccccccccc-c-ccccccccccc
Confidence            34555666666665552 2 2355566666666666666543 2 155666666666666555422 1 24555555555


Q ss_pred             EeccccCCCCCCcccCCCCCCCEEEcCCCCCCCCchhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCccc
Q 036117          166 RIGANYLEDPDPVKFKGMASLTDLWLDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFE  245 (641)
Q Consensus       166 ~l~~n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~  245 (641)
                      +++++.....  ..+..+++|+.|++++|.+..++ .+..+++|++|++.+|.+++ ++  .+.++++|++|++++|+++
T Consensus       112 ~l~~~~~~~~--~~~~~l~~L~~L~l~~n~l~~~~-~l~~~~~L~~L~l~~n~l~~-l~--~l~~l~~L~~L~ls~N~i~  185 (199)
T d2omxa2         112 TLFNNQITDI--DPLKNLTNLNRLELSSNTISDIS-ALSGLTSLQQLNFSSNQVTD-LK--PLANLTTLERLDISSNKVS  185 (199)
T ss_dssp             ECCSSCCCCC--GGGTTCTTCSEEECCSSCCCCCG-GGTTCTTCSEEECCSSCCCC-CG--GGTTCTTCCEEECCSSCCC
T ss_pred             cccccccccc--cccchhhhhHHhhhhhhhhcccc-cccccccccccccccccccC-Cc--cccCCCCCCEEECCCCCCC
Confidence            5555544432  22444445555555555444433 24444444444444444431 11  1234444444444444443

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.67  E-value=5.7e-16  Score=142.26  Aligned_cols=164  Identities=26%  Similarity=0.359  Sum_probs=82.5

Q ss_pred             CCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEeccccCCCCCCcccCCCCCCCEEE
Q 036117          111 ATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLW  190 (641)
Q Consensus       111 l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~  190 (641)
                      +..|++|++++|.+++. + .+..+++|++|++++|++++. + .++.+++|++|++++|+++++.  .+.++++|+.|+
T Consensus        45 L~~L~~L~l~~~~i~~l-~-~l~~l~~L~~L~L~~n~i~~l-~-~~~~l~~L~~L~l~~n~i~~l~--~l~~l~~L~~L~  118 (210)
T d1h6ta2          45 LNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDI-K-PLANLKNLGWLFLDENKVKDLS--SLKDLKKLKSLS  118 (210)
T ss_dssp             HHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCC-G-GGTTCTTCCEEECCSSCCCCGG--GGTTCTTCCEEE
T ss_pred             hcCccEEECcCCCCCCc-h-hHhhCCCCCEEeCCCccccCc-c-ccccCccccccccccccccccc--cccccccccccc
Confidence            34455555555555432 1 244455555555555555432 1 2344555555555555444321  344555555555


Q ss_pred             cCCCCCCCCchhhcCCCCCcEEEeeCCcCCCCCChhhhcCCCCCcEEeccCCcccccCCcccCCCCCCCEEEcCCCcCCc
Q 036117          191 LDYNLLEKFPSFIAECSKLMFLDLSDNLIMGHIPIEQLTHLENLEYLNLTKNSFEGEIPREIKTFPKLRHLKLGQNKLTG  270 (641)
Q Consensus       191 l~~~~~~~l~~~l~~~~~L~~L~l~~~~~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~L~~~~l~~  270 (641)
                      +++|.+..++ .+..+++++.+++++|.+.+. +  .+..+++|+++++++|++++ ++ .+..+++|++|++++|.++.
T Consensus       119 l~~~~~~~~~-~l~~l~~l~~l~~~~n~l~~~-~--~~~~l~~L~~l~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i~~  192 (210)
T d1h6ta2         119 LEHNGISDIN-GLVHLPQLESLYLGNNKITDI-T--VLSRLTKLDTLSLEDNQISD-IV-PLAGLTKLQNLYLSKNHISD  192 (210)
T ss_dssp             CTTSCCCCCG-GGGGCTTCCEEECCSSCCCCC-G--GGGGCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCB
T ss_pred             cccccccccc-ccccccccccccccccccccc-c--cccccccccccccccccccc-cc-cccCCCCCCEEECCCCCCCC
Confidence            5555554443 255555666666666655421 1  23455566666666665553 22 25555666666666665552


Q ss_pred             cCCcccCCCCcccEeeee
Q 036117          271 TIPDEIGLLSNLEILEFH  288 (641)
Q Consensus       271 ~~~~~l~~~~~L~~L~l~  288 (641)
                       ++ .+..+++|++|+++
T Consensus       193 -l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         193 -LR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             -CG-GGTTCTTCSEEEEE
T ss_pred             -Ch-hhcCCCCCCEEEcc
Confidence             22 35555566665554

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.67  E-value=8.6e-17  Score=145.61  Aligned_cols=173  Identities=14%  Similarity=0.187  Sum_probs=106.7

Q ss_pred             CCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccC-CccccCCCCCceEeccCCcccCCCccccccCCCC
Q 036117          439 LVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKL-PPGICRGGNLIYLTANVNKLVGPIPESLWNCTGL  517 (641)
Q Consensus       439 L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~-~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L  517 (641)
                      .++++.+++.++ .+|..+.        +.+++|++++|++++.+ +..+..+++|+.|++++|++.+..+..+..+++|
T Consensus        10 ~~~v~Cs~~~L~-~iP~~lp--------~~l~~L~Ls~N~i~~~~~~~~f~~l~~L~~L~L~~N~i~~~~~~~~~~~~~L   80 (192)
T d1w8aa_          10 GTTVDCTGRGLK-EIPRDIP--------LHTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHI   80 (192)
T ss_dssp             TTEEECTTSCCS-SCCSCCC--------TTCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTC
T ss_pred             CCEEEEeCCCcC-ccCCCCC--------CCCCEEEeCCCCCcccccccccCCCceEeeeecccccccccccccccccccc
Confidence            346677777666 5565432        15777777777776533 3445666777777777777766666666667777


Q ss_pred             cEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCC
Q 036117          518 TRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDN  597 (641)
Q Consensus       518 ~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n  597 (641)
                      ++|++++|++.+..+..|..+++|++|+|++|++++..+..|..+++|++|+|++|++....+.. .-...++.+.+..+
T Consensus        81 ~~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~-~~~~~l~~~~l~~~  159 (192)
T d1w8aa_          81 QELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLA-WFAEWLRKKSLNGG  159 (192)
T ss_dssp             CEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGH-HHHHHHHHHCCSGG
T ss_pred             ceeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchH-HHhhhhhhhcccCC
Confidence            77777777777666666677777777777777777666666667777777777777665322111 11123445556666


Q ss_pred             cCcccCCccccCCCCCCEEeCcCCCCc
Q 036117          598 QLTGKIPAQLFRSSFLIRLNLRRNQLS  624 (641)
Q Consensus       598 ~l~~~ip~~l~~~~~L~~l~l~~n~l~  624 (641)
                      .+....|..+   ..++.++|+.|.+.
T Consensus       160 ~~~c~~p~~l---~~~~l~~L~~n~l~  183 (192)
T d1w8aa_         160 AARCGAPSKV---RDVQIKDLPHSEFK  183 (192)
T ss_dssp             GCBBCSSTTT---TTSBGGGSCTTTCC
T ss_pred             CeEeCCChhh---cCCEeeecCHhhCc
Confidence            6665555433   33445566666664

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=3.5e-16  Score=147.65  Aligned_cols=181  Identities=13%  Similarity=0.064  Sum_probs=80.4

Q ss_pred             CCCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCccC-cccccCCCCCCEEEccC-CcCcccCCcchhcCCCCCCCC
Q 036117          390 KLEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGSI-PSTIGNLSSLVKLSLSS-NQLTGTLPPEIGNSKSDFGPR  467 (641)
Q Consensus       390 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~-~~~l~~l~~L~~L~ls~-n~l~~~~~~~~~~~~~~~~~~  467 (641)
                      ++++|++++|+++...+..|.++++|++|++++|.+...+ +..|..++.++++.+.. |.+....+..+..++      
T Consensus        30 ~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~~n~l~~~~~~~~~~l~------  103 (242)
T d1xwdc1          30 NAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLP------  103 (242)
T ss_dssp             CCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEECCTTCCEECTTSEECCT------
T ss_pred             CCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccccccccccccccccccc------
Confidence            4555555555555433344555555666665555554332 23345555555555443 233333333333333      


Q ss_pred             CccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCC-CCCcEEeC
Q 036117          468 FLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIY-PDLQYIDL  546 (641)
Q Consensus       468 ~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~L  546 (641)
                      +|+++++++|.+....+  ..                     .+..++.+..+...++.+....+..+..+ ..++.|++
T Consensus       104 ~L~~l~l~~~~l~~~~~--~~---------------------~~~~l~~l~~~~~~n~~l~~i~~~~~~~~~~~l~~L~l  160 (242)
T d1xwdc1         104 NLQYLLISNTGIKHLPD--VH---------------------KIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWL  160 (242)
T ss_dssp             TCCEEEEESCCCCSCCC--CT---------------------TTCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEEC
T ss_pred             cccccccchhhhccccc--cc---------------------ccccccccccccccccccccccccccccccccceeeec
Confidence            44444444444331111  01                     11222333333333444433333333333 24555555


Q ss_pred             CCCcccccCChhhhcCCCCCEE-eCcCCcCcccCCccccCCCCCCEEeCCCCcCc
Q 036117          547 GDNQLSGVLTSNWGKCTNLSNF-RISGNRIKGGIPAELGNLTYLQNLDIFDNQLT  600 (641)
Q Consensus       547 s~n~~~~~~~~~~~~l~~L~~L-~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~  600 (641)
                      ++|+++...+..+ ..++++++ .+++|+++...+..|.++++|++|+|++|+++
T Consensus       161 ~~n~l~~i~~~~~-~~~~l~~~~~l~~n~l~~l~~~~f~~l~~L~~L~Ls~N~l~  214 (242)
T d1xwdc1         161 NKNGIQEIHNCAF-NGTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIH  214 (242)
T ss_dssp             CSSCCCEECTTTT-TTCCEEEEECTTCTTCCCCCTTTTTTSCCCSEEECTTSCCC
T ss_pred             ccccccccccccc-cchhhhccccccccccccccHHHhcCCCCCCEEECCCCcCC
Confidence            5555554333322 22333333 34445555333334556666666666666665

>d1xwdc1 c.10.2.7 (C:18-259) Follicle-stimulating hormone receptor {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Follicle-stimulating hormone receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=4.6e-16  Score=146.82  Aligned_cols=106  Identities=19%  Similarity=0.233  Sum_probs=64.2

Q ss_pred             CEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCC-ChhccCCCCCcEEEecc
Q 036117           91 TALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQI-PHQLSNLQNAWLLRIGA  169 (641)
Q Consensus        91 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~-~~~l~~l~~L~~L~l~~  169 (641)
                      ++++.++..++ .+|..+.  +++++|++++|.++...+.+|.++++|++|++++|.+...+ +..|.++++++++.+..
T Consensus        11 ~~i~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~l~~~~f~~l~~L~~L~ls~n~~~~~i~~~~f~~l~~l~~l~~~~   87 (242)
T d1xwdc1          11 RVFLCQESKVT-EIPSDLP--RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEK   87 (242)
T ss_dssp             SEEEEESCSCS-SCCSCSC--SCCSEEEEESCCCCEECTTTTTTCTTCCEEEEESCTTCCEECSSSEESCTTCCEEEEEC
T ss_pred             CEEEEeCCCCC-CcCCCCC--CCCCEEECcCCcCCccChhHhhccchhhhhhhccccccceeeccccccccccccccccc
Confidence            45666666666 4554432  46777777777776444445677777777777777665433 34566677777766543


Q ss_pred             -ccCCCCCCcccCCCCCCCEEEcCCCCCCCC
Q 036117          170 -NYLEDPDPVKFKGMASLTDLWLDYNLLEKF  199 (641)
Q Consensus       170 -n~~~~~~~~~l~~l~~L~~L~l~~~~~~~l  199 (641)
                       |.+....+..|.++++|++++++++.+...
T Consensus        88 ~n~l~~~~~~~~~~l~~L~~l~l~~~~l~~~  118 (242)
T d1xwdc1          88 ANNLLYINPEAFQNLPNLQYLLISNTGIKHL  118 (242)
T ss_dssp             CTTCCEECTTSEECCTTCCEEEEESCCCCSC
T ss_pred             cccccccccccccccccccccccchhhhccc
Confidence             445555555555666666666655555433

>d1h6ta2 c.10.2.1 (A:31-240) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=8e-16  Score=141.24  Aligned_cols=121  Identities=29%  Similarity=0.369  Sum_probs=61.8

Q ss_pred             CCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEE
Q 036117          489 RGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNF  568 (641)
Q Consensus       489 ~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L  568 (641)
                      .+++|+.|++++|++.+ +| .+..+++|+.|++++|.+..  ...+..++.++.+++++|.+++.  ..+..+++|+++
T Consensus        88 ~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~l~~~~~~~--~~~l~~l~~l~~l~~~~n~l~~~--~~~~~l~~L~~l  161 (210)
T d1h6ta2          88 NLKNLGWLFLDENKVKD-LS-SLKDLKKLKSLSLEHNGISD--INGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTL  161 (210)
T ss_dssp             TCTTCCEEECCSSCCCC-GG-GGTTCTTCCEEECTTSCCCC--CGGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEE
T ss_pred             cCccccccccccccccc-cc-cccccccccccccccccccc--ccccccccccccccccccccccc--cccccccccccc
Confidence            34444444444444432 22 24445555555555555432  12344555555666655555432  234455566666


Q ss_pred             eCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCccccCCCCCCEEeCc
Q 036117          569 RISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLR  619 (641)
Q Consensus       569 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~~~L~~l~l~  619 (641)
                      ++++|++++ ++ .+.++++|++|++++|+++ .+| .+..+++|++|+|+
T Consensus       162 ~l~~n~l~~-i~-~l~~l~~L~~L~Ls~N~i~-~l~-~l~~l~~L~~L~Ls  208 (210)
T d1h6ta2         162 SLEDNQISD-IV-PLAGLTKLQNLYLSKNHIS-DLR-ALAGLKNLDVLELF  208 (210)
T ss_dssp             ECCSSCCCC-CG-GGTTCTTCCEEECCSSCCC-BCG-GGTTCTTCSEEEEE
T ss_pred             ccccccccc-cc-cccCCCCCCEEECCCCCCC-CCh-hhcCCCCCCEEEcc
Confidence            666666553 22 2555666666666666655 344 35555666666654

>d2omxa2 c.10.2.1 (A:37-235) Internalin B {Listeria monocytogenes [TaxId: 1639]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Internalin LRR domain
domain: Internalin B
species: Listeria monocytogenes [TaxId: 1639]

Probab=99.65  E-value=1.4e-15  Score=138.42  Aligned_cols=142  Identities=30%  Similarity=0.392  Sum_probs=83.8

Q ss_pred             ccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCC
Q 036117          487 ICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLS  566 (641)
Q Consensus       487 ~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~  566 (641)
                      +..+++|++|++++|++.+..|  +.++++|++|++++|.+....  .++.++.|+.|++++|.+...  ..+..+++|+
T Consensus        58 l~~l~nL~~L~Ls~N~l~~~~~--l~~l~~L~~L~l~~n~~~~~~--~l~~l~~L~~L~l~~~~~~~~--~~~~~l~~L~  131 (199)
T d2omxa2          58 VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADIT--PLANLTNLTGLTLFNNQITDI--DPLKNLTNLN  131 (199)
T ss_dssp             GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGTTCTTCSEEECCSSCCCCC--GGGTTCTTCS
T ss_pred             cccCCCcCcCccccccccCccc--ccCCccccccccccccccccc--ccccccccccccccccccccc--cccchhhhhH
Confidence            3445555555555555543222  556666666666666655322  255666677777766665543  2355666777


Q ss_pred             EEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCccccCCCCCCEEeCcCCCCcccCcccccCCCCCcCC
Q 036117          567 NFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLRRNQLSDKIPAEIGKLSRLQYL  640 (641)
Q Consensus       567 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~~~L~~l~l~~n~l~~~~p~~~~~l~~L~~l  640 (641)
                      .|++++|++.. + ..+..+++|++|++++|.+++ ++ .+..+++|++|++++|++++ +| .++++++|+.|
T Consensus       132 ~L~l~~n~l~~-~-~~l~~~~~L~~L~l~~n~l~~-l~-~l~~l~~L~~L~ls~N~i~~-i~-~l~~L~~L~~L  199 (199)
T d2omxa2         132 RLELSSNTISD-I-SALSGLTSLQQLNFSSNQVTD-LK-PLANLTTLERLDISSNKVSD-IS-VLAKLTNLESL  199 (199)
T ss_dssp             EEECCSSCCCC-C-GGGTTCTTCSEEECCSSCCCC-CG-GGTTCTTCCEEECCSSCCCC-CG-GGGGCTTCSEE
T ss_pred             Hhhhhhhhhcc-c-ccccccccccccccccccccC-Cc-cccCCCCCCEEECCCCCCCC-Cc-cccCCCCCCcC
Confidence            77777776652 2 246666777777777777663 33 35666777777777777654 33 35666666653

>d1w8aa_ c.10.2.7 (A:) Slit {Fruit fly (Drosophila melanogaster) [TaxId: 7227]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: Slit
species: Fruit fly (Drosophila melanogaster) [TaxId: 7227]

Probab=99.65  E-value=1.7e-16  Score=143.56  Aligned_cols=172  Identities=16%  Similarity=0.210  Sum_probs=98.8

Q ss_pred             CeEecccCcCCccCcccccCCCCCCEEEccCCcCcccC-CcchhcCCCCCCCCCccEEEccCCcccccCCccccCCCCCc
Q 036117          416 FDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQLTGTL-PPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLI  494 (641)
Q Consensus       416 ~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~l~~~~-~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~  494 (641)
                      +.++.+++.++ .+|+.+.  +.+++|++++|.+++.+ +..+..+.      +|++|++++|.+....+..+..++.|+
T Consensus        11 ~~v~Cs~~~L~-~iP~~lp--~~l~~L~Ls~N~i~~~~~~~~f~~l~------~L~~L~L~~N~i~~~~~~~~~~~~~L~   81 (192)
T d1w8aa_          11 TTVDCTGRGLK-EIPRDIP--LHTTELLLNDNELGRISSDGLFGRLP------HLVKLELKRNQLTGIEPNAFEGASHIQ   81 (192)
T ss_dssp             TEEECTTSCCS-SCCSCCC--TTCSEEECCSCCCCSBCCSCSGGGCT------TCCEEECCSSCCCCBCTTTTTTCTTCC
T ss_pred             CEEEEeCCCcC-ccCCCCC--CCCCEEEeCCCCCcccccccccCCCc------eEeeeeccccccccccccccccccccc
Confidence            45666666665 4554332  45666666666665433 33344444      666666666666655566666666666


Q ss_pred             eEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCc
Q 036117          495 YLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNR  574 (641)
Q Consensus       495 ~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~  574 (641)
                      .|++++|++....|.+|.++++|++|+|++|++++..+..|..+++|++|+|++|++.......+. ...++.+.+..+.
T Consensus        82 ~L~Ls~N~l~~l~~~~F~~l~~L~~L~L~~N~l~~i~~~~f~~l~~L~~l~L~~N~~~~~~~~~~~-~~~l~~~~l~~~~  160 (192)
T d1w8aa_          82 ELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWF-AEWLRKKSLNGGA  160 (192)
T ss_dssp             EEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHH-HHHHHHHCCSGGG
T ss_pred             eeeeccccccccCHHHHhCCCcccccccCCccccccCHHHhcCCcccccccccccccccccchHHH-hhhhhhhcccCCC
Confidence            666666666655555666666666666666666666666666666666666666666543222111 1234445555555


Q ss_pred             CcccCCccccCCCCCCEEeCCCCcCc
Q 036117          575 IKGGIPAELGNLTYLQNLDIFDNQLT  600 (641)
Q Consensus       575 l~~~~p~~l~~l~~L~~L~L~~n~l~  600 (641)
                      ++...|..   +..++.++|+.|.+.
T Consensus       161 ~~c~~p~~---l~~~~l~~L~~n~l~  183 (192)
T d1w8aa_         161 ARCGAPSK---VRDVQIKDLPHSEFK  183 (192)
T ss_dssp             CBBCSSTT---TTTSBGGGSCTTTCC
T ss_pred             eEeCCChh---hcCCEeeecCHhhCc
Confidence            55555533   334455566666654

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=9.9e-16  Score=147.69  Aligned_cols=235  Identities=17%  Similarity=0.181  Sum_probs=167.4

Q ss_pred             CCEEEccCCcCcCCchhhhhCCCCCCeEecccCcCCcc-CcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCc
Q 036117          391 LEYLYLFDNKFSGPIPQQIGNLTNLFDLQLANNFFNGS-IPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFL  469 (641)
Q Consensus       391 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L  469 (641)
                      ...+.++...+..... ......+|++|++++|.+.+. +...+..+++|++|++++|.+.+..+..+...+      +|
T Consensus        25 ~~~lrl~~~~~~~~~~-~~~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~------~L   97 (284)
T d2astb2          25 VIAFRCPRSFMDQPLA-EHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNS------NL   97 (284)
T ss_dssp             CSEEECTTCEECSCCC-SCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCT------TC
T ss_pred             ceEeeccccccccchh-hhccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCC------CC
Confidence            4566666655443322 233456899999999988754 456678899999999999999877777777766      89


Q ss_pred             cEEEccCCc-cccc-CCccccCCCCCceEeccCCcc-cCC-Cccccc-cCCCCcEEECCCCc--Cccc-cCcccCCCCCC
Q 036117          470 RNVSFSYNN-FSGK-LPPGICRGGNLIYLTANVNKL-VGP-IPESLW-NCTGLTRVRLEQNR--LDGD-ITNALGIYPDL  541 (641)
Q Consensus       470 ~~L~ls~n~-l~~~-~~~~~~~~~~L~~L~l~~n~~-~~~-~~~~l~-~~~~L~~L~l~~n~--l~~~-~~~~~~~l~~L  541 (641)
                      ++|++++|. +++. +......+++|++|++++|.. ... +...+. .++.|+.|+++++.  ++.. +......+|+|
T Consensus        98 ~~L~Ls~c~~itd~~l~~l~~~~~~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L  177 (284)
T d2astb2          98 VRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNL  177 (284)
T ss_dssp             SEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTC
T ss_pred             cCccccccccccccccchhhHHHHhccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccc
Confidence            999999964 5432 222345689999999999753 321 222233 35789999999863  3332 23334568999


Q ss_pred             cEEeCCCCc-ccccCChhhhcCCCCCEEeCcCC-cCcccCCccccCCCCCCEEeCCCCcCcccCCccccCCCCCCEEeCc
Q 036117          542 QYIDLGDNQ-LSGVLTSNWGKCTNLSNFRISGN-RIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFRSSFLIRLNLR  619 (641)
Q Consensus       542 ~~L~Ls~n~-~~~~~~~~~~~l~~L~~L~L~~n-~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~~~~L~~l~l~  619 (641)
                      ++|++++|. +++..+..+.++++|++|++++| .+++.....++++++|+.|++++|--.+.++.-...   +..|++.
T Consensus       178 ~~L~L~~~~~itd~~~~~l~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~---lp~L~i~  254 (284)
T d2astb2         178 VHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEA---LPHLQIN  254 (284)
T ss_dssp             SEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHH---STTSEES
T ss_pred             cccccccccCCCchhhhhhcccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCCCCHHHHHHHHHh---Ccccccc
Confidence            999999975 78778888999999999999996 577666677889999999999998222222222223   4445678


Q ss_pred             CCCCcccCcccccCCC
Q 036117          620 RNQLSDKIPAEIGKLS  635 (641)
Q Consensus       620 ~n~l~~~~p~~~~~l~  635 (641)
                      .+++++..+..+++..
T Consensus       255 ~~~ls~~~~~~~~~~~  270 (284)
T d2astb2         255 CSHFTTIARPTIGNKK  270 (284)
T ss_dssp             CCCSCCTTCSSCSSTT
T ss_pred             CccCCCCCCCccCccc
Confidence            8888887777766543

>d2astb2 c.10.1.3 (B:2136-2419) Cyclin A/CDK2-associated p19, Skp2 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Cyclin A/CDK2-associated p19, Skp2
domain: Cyclin A/CDK2-associated p19, Skp2
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=4.1e-15  Score=143.29  Aligned_cols=215  Identities=16%  Similarity=0.166  Sum_probs=154.7

Q ss_pred             CCCCCCCEEEccCCcCcCC-chhhhhCCCCCCeEecccCcCCccCcccccCCCCCCEEEccCCc-CcccC-CcchhcCCC
Q 036117          386 GLLPKLEYLYLFDNKFSGP-IPQQIGNLTNLFDLQLANNFFNGSIPSTIGNLSSLVKLSLSSNQ-LTGTL-PPEIGNSKS  462 (641)
Q Consensus       386 ~~~~~L~~L~L~~n~l~~~-~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~ls~n~-l~~~~-~~~~~~~~~  462 (641)
                      ....+|++|+++++.+++. +...+..+++|++|++++|.+.+..+..+.++++|++|++++|. +++.. ......++ 
T Consensus        43 ~~~~~L~~LdLs~~~i~~~~l~~l~~~c~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~Ls~c~~itd~~l~~l~~~~~-  121 (284)
T d2astb2          43 FSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCS-  121 (284)
T ss_dssp             CCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCT-
T ss_pred             ccCCCCCEEECCCCccCHHHHHHHHHhCCCcccccccccCCCcHHHHHHhcCCCCcCccccccccccccccchhhHHHH-
Confidence            3456899999999988754 34557789999999999999988778888899999999999974 44321 12223445 


Q ss_pred             CCCCCCccEEEccCCc-cccc-CCcccc-CCCCCceEeccCCc--ccC-CCccccccCCCCcEEECCCC-cCccccCccc
Q 036117          463 DFGPRFLRNVSFSYNN-FSGK-LPPGIC-RGGNLIYLTANVNK--LVG-PIPESLWNCTGLTRVRLEQN-RLDGDITNAL  535 (641)
Q Consensus       463 ~~~~~~L~~L~ls~n~-l~~~-~~~~~~-~~~~L~~L~l~~n~--~~~-~~~~~l~~~~~L~~L~l~~n-~l~~~~~~~~  535 (641)
                           +|++|++++|. +++. +...+. .++.|+.|+++++.  +.. .+.....+|++|++|++++| .+++.....+
T Consensus       122 -----~L~~L~ls~c~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~i~~~~l~~l~~~~~~L~~L~L~~~~~itd~~~~~l  196 (284)
T d2astb2         122 -----RLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEF  196 (284)
T ss_dssp             -----TCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGG
T ss_pred             -----hccccccccccccccccchhhhcccccccchhhhcccccccccccccccccccccccccccccccCCCchhhhhh
Confidence                 89999999974 4332 222233 35789999999864  322 22333567999999999987 4676777888


Q ss_pred             CCCCCCcEEeCCCC-cccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCccccC
Q 036117          536 GIYPDLQYIDLGDN-QLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQLFR  609 (641)
Q Consensus       536 ~~l~~L~~L~Ls~n-~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~l~~  609 (641)
                      ..+++|++|++++| .+++.....++++++|++|++++|--.+.++.....++.|   ++..+++++..+..++.
T Consensus       197 ~~~~~L~~L~L~~C~~i~~~~l~~L~~~~~L~~L~l~~~~~d~~l~~l~~~lp~L---~i~~~~ls~~~~~~~~~  268 (284)
T d2astb2         197 FQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGIVPDGTLQLLKEALPHL---QINCSHFTTIARPTIGN  268 (284)
T ss_dssp             GGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTSSCTTCHHHHHHHSTTS---EESCCCSCCTTCSSCSS
T ss_pred             cccCcCCEEECCCCCCCChHHHHHHhcCCCCCEEeeeCCCCHHHHHHHHHhCccc---cccCccCCCCCCCccCc
Confidence            89999999999996 5887777788999999999999982222222222445555   45777787655555544

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.53  E-value=1.5e-15  Score=151.33  Aligned_cols=256  Identities=18%  Similarity=0.198  Sum_probs=133.4

Q ss_pred             CchhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCCcCcCC----------chhhhhCCC
Q 036117          344 LPLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDNKFSGP----------IPQQIGNLT  413 (641)
Q Consensus       344 ~~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n~l~~~----------~~~~~~~l~  413 (641)
                      +...+.....+++|++++|.+..-..         ..+...+...++|+.++++++.....          +...+..++
T Consensus        23 l~~~L~~~~~l~~L~Ls~n~i~~~~~---------~~l~~~l~~~~~L~~l~l~~~~~~~~~~~~~~~~~~l~~~l~~~~   93 (344)
T d2ca6a1          23 VFAVLLEDDSVKEIVLSGNTIGTEAA---------RWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCP   93 (344)
T ss_dssp             TSHHHHHCSCCCEEECTTSEECHHHH---------HHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCT
T ss_pred             HHHHHhhCCCCCEEECcCCcCCHHHH---------HHHHHHHHhCCCCCEEECCCCcccccccccchHHHHHHHHHhhCC
Confidence            34455666677777766665432100         01123345566777777776543311          112234556


Q ss_pred             CCCeEecccCcCCcc----CcccccCCCCCCEEEccCCcCcccCCcchhcCCCCCCCCCccEEEccCCcccccCCccccC
Q 036117          414 NLFDLQLANNFFNGS----IPSTIGNLSSLVKLSLSSNQLTGTLPPEIGNSKSDFGPRFLRNVSFSYNNFSGKLPPGICR  489 (641)
Q Consensus       414 ~L~~L~l~~n~l~~~----~~~~l~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~  489 (641)
                      +|+.|++++|.+...    +...+..+++|++|++++|.+.......+...        +..+         ........
T Consensus        94 ~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~--------l~~~---------~~~~~~~~  156 (344)
T d2ca6a1          94 KLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARA--------LQEL---------AVNKKAKN  156 (344)
T ss_dssp             TCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHH--------HHHH---------HHHHHHHT
T ss_pred             Ccccccccccccccccccchhhhhcccccchheeccccccccccccccccc--------cccc---------cccccccc
Confidence            666666666666532    22334455666666666666542211111000        0000         00001123


Q ss_pred             CCCCceEeccCCcccCC----CccccccCCCCcEEECCCCcCccc-----cCcccCCCCCCcEEeCCCCccccc----CC
Q 036117          490 GGNLIYLTANVNKLVGP----IPESLWNCTGLTRVRLEQNRLDGD-----ITNALGIYPDLQYIDLGDNQLSGV----LT  556 (641)
Q Consensus       490 ~~~L~~L~l~~n~~~~~----~~~~l~~~~~L~~L~l~~n~l~~~-----~~~~~~~l~~L~~L~Ls~n~~~~~----~~  556 (641)
                      .+.|+.+.+++|++...    +...+..++.|++|++++|++...     +...+..++.|+.|++++|.++..    +.
T Consensus       157 ~~~L~~l~l~~n~i~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~g~~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~  236 (344)
T d2ca6a1         157 APPLRSIICGRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALA  236 (344)
T ss_dssp             CCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHH
T ss_pred             Ccccceeecccccccccccccccchhhhhhhhcccccccccccccccccchhhhhcchhhhccccccccccccccccccc
Confidence            34555555555554321    222345566677777777766532     233455667777777777776543    23


Q ss_pred             hhhhcCCCCCEEeCcCCcCcccCC----ccccC--CCCCCEEeCCCCcCccc----CCcccc-CCCCCCEEeCcCCCCcc
Q 036117          557 SNWGKCTNLSNFRISGNRIKGGIP----AELGN--LTYLQNLDIFDNQLTGK----IPAQLF-RSSFLIRLNLRRNQLSD  625 (641)
Q Consensus       557 ~~~~~l~~L~~L~L~~n~l~~~~p----~~l~~--l~~L~~L~L~~n~l~~~----ip~~l~-~~~~L~~l~l~~n~l~~  625 (641)
                      ..+..++.|++|++++|.+.+...    ..+..  .+.|++|++++|++...    +...+. .++.|+.|++++|.+..
T Consensus       237 ~~l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~~  316 (344)
T d2ca6a1         237 IALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSE  316 (344)
T ss_dssp             HHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCT
T ss_pred             ccccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCCC
Confidence            445666777777777777654322    22222  35677788888877543    223332 45677788888877753

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=8.7e-15  Score=127.49  Aligned_cols=127  Identities=13%  Similarity=0.091  Sum_probs=88.9

Q ss_pred             ccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCC
Q 036117          487 ICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLS  566 (641)
Q Consensus       487 ~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~  566 (641)
                      +.++..+++|++++|++. .++..+..+++|+.|++++|++...  ..+..+++|++|++++|+++...+..+..+++|+
T Consensus        14 ~~n~~~lr~L~L~~n~I~-~i~~~~~~l~~L~~L~Ls~N~i~~l--~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L~   90 (162)
T d1a9na_          14 YTNAVRDRELDLRGYKIP-VIENLGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLT   90 (162)
T ss_dssp             EECTTSCEEEECTTSCCC-SCCCGGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCC
T ss_pred             ccCcCcCcEEECCCCCCC-ccCccccccccCCEEECCCCCCCcc--CCcccCcchhhhhcccccccCCCccccccccccc
Confidence            456667788888888876 4455556677888888888877743  3467778888888888887766665666778888


Q ss_pred             EEeCcCCcCcccCC-ccccCCCCCCEEeCCCCcCcccCCc----cccCCCCCCEEe
Q 036117          567 NFRISGNRIKGGIP-AELGNLTYLQNLDIFDNQLTGKIPA----QLFRSSFLIRLN  617 (641)
Q Consensus       567 ~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~ip~----~l~~~~~L~~l~  617 (641)
                      .|++++|++..... ..+..+++|++|++++|+++ ..|.    .+..+++|+.||
T Consensus        91 ~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~-~~~~~r~~~i~~lp~L~~LD  145 (162)
T d1a9na_          91 ELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLD  145 (162)
T ss_dssp             EEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEET
T ss_pred             cceeccccccccccccccccccccchhhcCCCccc-cccchHHHHHHHCCCcCeeC
Confidence            88888887763211 35677778888888888776 3442    355667777766

>d1a9na_ c.10.2.4 (A:) Splicesomal U2A' protein {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: U2A'-like
domain: Splicesomal U2A' protein
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=1e-14  Score=127.08  Aligned_cols=113  Identities=19%  Similarity=0.139  Sum_probs=66.6

Q ss_pred             CCCCCCCCCEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCC
Q 036117           83 DFSAFPNLTALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNA  162 (641)
Q Consensus        83 ~~~~l~~L~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L  162 (641)
                      .+.+...+|+|+|++|+++. ++..+..+++|++|++++|.++. + +.+..+++|++|++++|+++...+..+..+++|
T Consensus        13 ~~~n~~~lr~L~L~~n~I~~-i~~~~~~l~~L~~L~Ls~N~i~~-l-~~~~~l~~L~~L~ls~N~i~~l~~~~~~~l~~L   89 (162)
T d1a9na_          13 QYTNAVRDRELDLRGYKIPV-IENLGATLDQFDAIDFSDNEIRK-L-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL   89 (162)
T ss_dssp             EEECTTSCEEEECTTSCCCS-CCCGGGGTTCCSEEECCSSCCCE-E-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred             hccCcCcCcEEECCCCCCCc-cCccccccccCCEEECCCCCCCc-c-CCcccCcchhhhhcccccccCCCcccccccccc
Confidence            35556667777777777763 35555667777777777777663 3 246666777777777777665444445556666


Q ss_pred             cEEEeccccCCCCCC-cccCCCCCCCEEEcCCCCCCC
Q 036117          163 WLLRIGANYLEDPDP-VKFKGMASLTDLWLDYNLLEK  198 (641)
Q Consensus       163 ~~L~l~~n~~~~~~~-~~l~~l~~L~~L~l~~~~~~~  198 (641)
                      ++|++++|++.+... ..+..+++|++|++++|++..
T Consensus        90 ~~L~L~~N~i~~~~~l~~l~~l~~L~~L~l~~N~i~~  126 (162)
T d1a9na_          90 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVTN  126 (162)
T ss_dssp             CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGGG
T ss_pred             ccceeccccccccccccccccccccchhhcCCCcccc
Confidence            666666666554322 334444444444444444433

>d2ca6a1 c.10.1.2 (A:2-345) Rna1p (RanGAP1), N-terminal domain {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: Rna1p (RanGAP1), N-terminal domain
domain: Rna1p (RanGAP1), N-terminal domain
species: Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]

Probab=99.49  E-value=7.7e-15  Score=146.09  Aligned_cols=249  Identities=20%  Similarity=0.183  Sum_probs=132.6

Q ss_pred             CCCCCCCCEEEccCccccccC----chhhhcCCCCCeEeCCcccccccceeecccccccccCCcCCCCCCCCCEEEccCC
Q 036117          324 LGFCANLTFLELSINNLTGSL----PLSLASLRQISELGISNNQLSEIISLQLQMNDLSGKLPPEIGLLPKLEYLYLFDN  399 (641)
Q Consensus       324 l~~~~~L~~L~l~~n~l~~~~----~~~l~~~~~L~~L~l~~n~~~~l~~l~l~~~~l~~~~~~~l~~~~~L~~L~L~~n  399 (641)
                      +.....+++|++++|.+....    ...+...+.|+.++++++........   .......+...+..+++|++|++++|
T Consensus        27 L~~~~~l~~L~Ls~n~i~~~~~~~l~~~l~~~~~L~~l~l~~~~~~~~~~~---~~~~~~~l~~~l~~~~~L~~L~L~~n  103 (344)
T d2ca6a1          27 LLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDE---IPEALRLLLQALLKCPKLHTVRLSDN  103 (344)
T ss_dssp             HHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGG---SHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred             HhhCCCCCEEECcCCcCCHHHHHHHHHHHHhCCCCCEEECCCCcccccccc---cchHHHHHHHHHhhCCCccccccccc
Confidence            444566667777766665432    23344556777777666543321100   00000012234566789999999999


Q ss_pred             cCcCC----chhhhhCCCCCCeEecccCcCCccCccc-------------ccCCCCCCEEEccCCcCcccCCc----chh
Q 036117          400 KFSGP----IPQQIGNLTNLFDLQLANNFFNGSIPST-------------IGNLSSLVKLSLSSNQLTGTLPP----EIG  458 (641)
Q Consensus       400 ~l~~~----~~~~~~~l~~L~~L~l~~n~l~~~~~~~-------------l~~l~~L~~L~ls~n~l~~~~~~----~~~  458 (641)
                      .+++.    +...+..+++|++|++++|.+.......             ....+.|+.+++++|.+......    .+.
T Consensus       104 ~i~~~~~~~l~~~l~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~~~~~~~~~~L~~l~l~~n~i~~~~~~~l~~~l~  183 (344)
T d2ca6a1         104 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQ  183 (344)
T ss_dssp             CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHH
T ss_pred             ccccccccchhhhhcccccchheecccccccccccccccccccccccccccccCcccceeecccccccccccccccchhh
Confidence            98865    3344567899999999999875321111             12456777777777766532211    122


Q ss_pred             cCCCCCCCCCccEEEccCCcccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccc----cCcc
Q 036117          459 NSKSDFGPRFLRNVSFSYNNFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGD----ITNA  534 (641)
Q Consensus       459 ~~~~~~~~~~L~~L~ls~n~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~----~~~~  534 (641)
                      ...      .+++|++++|.++....                   ...+...+..+++|+.|++++|++...    +...
T Consensus       184 ~~~------~L~~L~L~~n~i~~~g~-------------------~~~l~~~l~~~~~L~~L~Ls~N~i~~~g~~~L~~~  238 (344)
T d2ca6a1         184 SHR------LLHTVKMVQNGIRPEGI-------------------EHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIA  238 (344)
T ss_dssp             HCT------TCCEEECCSSCCCHHHH-------------------HHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHH
T ss_pred             hhh------hhccccccccccccccc-------------------ccchhhhhcchhhhccccccccccccccccccccc
Confidence            222      45555555555432100                   000122344555666666666655422    2334


Q ss_pred             cCCCCCCcEEeCCCCcccccCChhh----hc--CCCCCEEeCcCCcCccc----CCcccc-CCCCCCEEeCCCCcCc
Q 036117          535 LGIYPDLQYIDLGDNQLSGVLTSNW----GK--CTNLSNFRISGNRIKGG----IPAELG-NLTYLQNLDIFDNQLT  600 (641)
Q Consensus       535 ~~~l~~L~~L~Ls~n~~~~~~~~~~----~~--l~~L~~L~L~~n~l~~~----~p~~l~-~l~~L~~L~L~~n~l~  600 (641)
                      +..+++|++|++++|.+++.....+    ..  .+.|++|++++|.+...    +...+. +.++|+.|+|++|.+.
T Consensus       239 l~~~~~L~~L~Ls~n~i~~~g~~~l~~~l~~~~~~~L~~L~ls~N~i~~~~~~~l~~~l~~~~~~L~~L~l~~N~~~  315 (344)
T d2ca6a1         239 LKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFS  315 (344)
T ss_dssp             GGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSC
T ss_pred             ccccccchhhhhhcCccCchhhHHHHHHhhhccCCCCCEEECCCCcCChHHHHHHHHHHHccCCCCCEEECCCCcCC
Confidence            4556666666666666654322222    21  24566666666665432    222232 4566777777777664

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.45  E-value=2.3e-13  Score=112.30  Aligned_cols=79  Identities=28%  Similarity=0.348  Sum_probs=39.2

Q ss_pred             CEEECCCCCCCccCchhccCCCCCCEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEeccc
Q 036117           91 TALNLNMNNLVGSIPAGIGNATKLILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGAN  170 (641)
Q Consensus        91 ~~L~L~~n~~~~~~~~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n  170 (641)
                      |+|+|++|+++ .++ .+..+++|++|++++|.++ .+|..++.+++|++|++++|.+++. | .+..+++|+++++++|
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l-~-~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D-GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G-GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhccccccccccccccc-C-ccccccccCeEECCCC
Confidence            34555555554 222 2455555555555555555 3444455555555555555555422 2 2444444444444444


Q ss_pred             cCCC
Q 036117          171 YLED  174 (641)
Q Consensus       171 ~~~~  174 (641)
                      ++.+
T Consensus        76 ~i~~   79 (124)
T d1dcea3          76 RLQQ   79 (124)
T ss_dssp             CCCS
T ss_pred             ccCC
Confidence            4443

>d1dcea3 c.10.2.2 (A:444-567) Rab geranylgeranyltransferase alpha-subunit, C-terminal domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
domain: Rab geranylgeranyltransferase alpha-subunit, C-terminal domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.45  E-value=3e-13  Score=111.66  Aligned_cols=101  Identities=27%  Similarity=0.371  Sum_probs=75.0

Q ss_pred             CEEECCCCcCCCCCccccCCCCCCCEEEcccccCCCCCChhccCCCCCcEEEeccccCCCCCCcccCCCCCCCEEEcCCC
Q 036117          115 ILLDLSSNNLTNPIPPEIGYLSDLRVLLLYNNSLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYN  194 (641)
Q Consensus       115 ~~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~  194 (641)
                      |+|++++|.++ .++ .++.+++|++|++++|+++ .+|..+..+++|++|++++|.+++..  .+..+++|++|++++|
T Consensus         1 R~L~Ls~n~l~-~l~-~l~~l~~L~~L~ls~N~l~-~lp~~~~~l~~L~~L~l~~N~i~~l~--~~~~l~~L~~L~l~~N   75 (124)
T d1dcea3           1 RVLHLAHKDLT-VLC-HLEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENVD--GVANLPRLQELLLCNN   75 (124)
T ss_dssp             SEEECTTSCCS-SCC-CGGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCCG--GGTTCSSCCEEECCSS
T ss_pred             CEEEcCCCCCC-CCc-ccccCCCCCEEECCCCccC-cchhhhhhhhcccccccccccccccC--ccccccccCeEECCCC
Confidence            57889999888 444 4788888899999888887 46777888888888888888887653  4677777777777777


Q ss_pred             CCCCCch--hhcCCCCCcEEEeeCCcCC
Q 036117          195 LLEKFPS--FIAECSKLMFLDLSDNLIM  220 (641)
Q Consensus       195 ~~~~l~~--~l~~~~~L~~L~l~~~~~~  220 (641)
                      .+..++.  .+..+++|++|++++|.+.
T Consensus        76 ~i~~~~~~~~l~~~~~L~~L~l~~N~i~  103 (124)
T d1dcea3          76 RLQQSAAIQPLVSCPRLVLLNLQGNSLC  103 (124)
T ss_dssp             CCCSSSTTGGGGGCTTCCEEECTTSGGG
T ss_pred             ccCCCCCchhhcCCCCCCEEECCCCcCC
Confidence            7766552  4566666677776666654

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.27  E-value=5.7e-14  Score=126.78  Aligned_cols=144  Identities=22%  Similarity=0.189  Sum_probs=88.6

Q ss_pred             CccEEEccCC--cccccCCccccCCCCCceEeccCCcccCCCccccccCCCCcEEECCCCcCccccCcccCCCCCCcEEe
Q 036117          468 FLRNVSFSYN--NFSGKLPPGICRGGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYID  545 (641)
Q Consensus       468 ~L~~L~ls~n--~l~~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~  545 (641)
                      ..+.+++.+.  .+. .++..+..+++|+.|++++|++. .++ .+..+++|+.|++++|.+.. ++.....++.|+.|+
T Consensus        24 ~~~~~~l~~~~~~i~-~l~~sl~~L~~L~~L~Ls~n~I~-~i~-~l~~l~~L~~L~Ls~N~i~~-i~~~~~~~~~L~~L~   99 (198)
T d1m9la_          24 EAEKVELHGMIPPIE-KMDATLSTLKACKHLALSTNNIE-KIS-SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELW   99 (198)
T ss_dssp             TCSCEECCBCCTTCC-CCHHHHHHTTTCCEEECSEEEES-CCC-CHHHHTTCCEEECCEEEECS-CSSHHHHHHHCCEEE
T ss_pred             ccceeeeecccCchh-hhhhHHhcccccceeECcccCCC-Ccc-cccCCccccChhhccccccc-ccccccccccccccc
Confidence            3555665543  122 34556667777777777777776 333 46677777777777777653 343344455677777


Q ss_pred             CCCCcccccCChhhhcCCCCCEEeCcCCcCcccCC-ccccCCCCCCEEeCCCCcCcccCCcc----------ccCCCCCC
Q 036117          546 LGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIP-AELGNLTYLQNLDIFDNQLTGKIPAQ----------LFRSSFLI  614 (641)
Q Consensus       546 Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p-~~l~~l~~L~~L~L~~n~l~~~ip~~----------l~~~~~L~  614 (641)
                      +++|+++..  ..+..+++|+.|++++|+++.... ..+..+++|+.|++++|++....+..          +..+++|+
T Consensus       100 l~~N~i~~l--~~~~~l~~L~~L~L~~N~i~~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~~~~~~r~~vi~~lp~L~  177 (198)
T d1m9la_         100 ISYNQIASL--SGIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLK  177 (198)
T ss_dssp             CSEEECCCH--HHHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSSHHHHHHCTTTTHHHHHHHHHHHCSSCC
T ss_pred             ccccccccc--ccccccccccccccccchhccccccccccCCCccceeecCCCccccCcccccchhhHHHHHHHHCCCcC
Confidence            777777643  346667777777777777763211 34667777777777777765433321          34456666


Q ss_pred             EEe
Q 036117          615 RLN  617 (641)
Q Consensus       615 ~l~  617 (641)
                      .||
T Consensus       178 ~LD  180 (198)
T d1m9la_         178 KLD  180 (198)
T ss_dssp             EES
T ss_pred             EeC
Confidence            655

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.26  E-value=1.4e-11  Score=105.95  Aligned_cols=144  Identities=15%  Similarity=0.025  Sum_probs=94.6

Q ss_pred             CCCCceEeccCCcccCCCccccccCCCCcEEECCCC-cCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEE
Q 036117          490 GGNLIYLTANVNKLVGPIPESLWNCTGLTRVRLEQN-RLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNF  568 (641)
Q Consensus       490 ~~~L~~L~l~~n~~~~~~~~~l~~~~~L~~L~l~~n-~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L  568 (641)
                      +...+.++.+++++. ..|..+..+++|++|++++| .+....+..|..+++|+.|++++|+++...+.+|..+++|++|
T Consensus         7 c~~~~~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L   85 (156)
T d2ifga3           7 PHGSSGLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRL   85 (156)
T ss_dssp             CSSSSCEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEE
T ss_pred             cCCCCeEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccce
Confidence            334455666666655 45566777788888888765 4776666778888888888888888888778888888888888


Q ss_pred             eCcCCcCcccCCccccCCCCCCEEeCCCCcCcccC-CccccCCCCCCEEeCcCCCCcccCcccccCCC
Q 036117          569 RISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKI-PAQLFRSSFLIRLNLRRNQLSDKIPAEIGKLS  635 (641)
Q Consensus       569 ~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~i-p~~l~~~~~L~~l~l~~n~l~~~~p~~~~~l~  635 (641)
                      +|++|+++...+..+.. .+|+.|+|++|++...- -.++..+.......+..+++.-.-|..+..++
T Consensus        86 ~Ls~N~l~~l~~~~~~~-~~l~~L~L~~Np~~C~C~~~~l~~~~~~~~~~~~~~~~~C~~p~~l~~~p  152 (156)
T d2ifga3          86 NLSFNALESLSWKTVQG-LSLQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQGPLAHMP  152 (156)
T ss_dssp             ECCSSCCSCCCSTTTCS-CCCCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSSCSSCCC
T ss_pred             eccCCCCcccChhhhcc-ccccccccCCCcccCCchHHHHHHHHHhccCccCcCCcEECcChHHCcCC
Confidence            88888888444444444 46888888888885211 11222222222334445566555665555554

>d2ifga3 c.10.2.7 (A:36-191) High affinity nerve growth factor receptor, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: Ngr ectodomain-like
domain: High affinity nerve growth factor receptor, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.22  E-value=1.9e-11  Score=105.15  Aligned_cols=103  Identities=22%  Similarity=0.120  Sum_probs=50.4

Q ss_pred             EEECCCCcCCCCCccccCCCCCCCEEEcccc-cCCCCCChhccCCCCCcEEEeccccCCCCCCcccCCCCCCCEEEcCCC
Q 036117          116 LLDLSSNNLTNPIPPEIGYLSDLRVLLLYNN-SLTGQIPHQLSNLQNAWLLRIGANYLEDPDPVKFKGMASLTDLWLDYN  194 (641)
Q Consensus       116 ~L~L~~n~l~~~~p~~l~~l~~L~~L~l~~n-~~~~~~~~~l~~l~~L~~L~l~~n~~~~~~~~~l~~l~~L~~L~l~~~  194 (641)
                      .++.+++.+. ..|..+..+++|++|+++++ .++...+..|.++++|+.|++++|+++.+.+..|.++++|++|++++|
T Consensus        12 ~l~c~~~~~~-~~p~~l~~l~~l~~L~l~~n~~l~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~Ls~N   90 (156)
T d2ifga3          12 GLRCTRDGAL-DSLHHLPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN   90 (156)
T ss_dssp             CEECCSSCCC-TTTTTSCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred             eEEecCCCCc-cCcccccCccccCeeecCCCccccccCchhhccccccCcceeeccccCCcccccccccccccceeccCC
Confidence            3444444433 23334444444555554433 244333344555555555555555555555555555555555555555


Q ss_pred             CCCCCchhhcCCCCCcEEEeeCCcC
Q 036117          195 LLEKFPSFIAECSKLMFLDLSDNLI  219 (641)
Q Consensus       195 ~~~~l~~~l~~~~~L~~L~l~~~~~  219 (641)
                      .+..+|.......+|++|++++|.+
T Consensus        91 ~l~~l~~~~~~~~~l~~L~L~~Np~  115 (156)
T d2ifga3          91 ALESLSWKTVQGLSLQELVLSGNPL  115 (156)
T ss_dssp             CCSCCCSTTTCSCCCCEEECCSSCC
T ss_pred             CCcccChhhhccccccccccCCCcc
Confidence            5555554444444566666666655

>d1m9la_ c.10.3.1 (A:) Outer arm dynein light chain 1 {Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: Outer arm dynein light chain 1
family: Outer arm dynein light chain 1
domain: Outer arm dynein light chain 1
species: Green algae (Chlamydomonas reinhardtii) [TaxId: 3055]

Probab=99.20  E-value=3.2e-13  Score=121.77  Aligned_cols=109  Identities=22%  Similarity=0.225  Sum_probs=48.1

Q ss_pred             ccccCCCCcEEECCCCcCccccCcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCccccCCCCC
Q 036117          510 SLWNCTGLTRVRLEQNRLDGDITNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYL  589 (641)
Q Consensus       510 ~l~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L  589 (641)
                      .+..+++|++|++++|.+... + .+..+++|+.|++++|+++. ++.....+++|++|++++|+++..  ..+..+++|
T Consensus        43 sl~~L~~L~~L~Ls~n~I~~i-~-~l~~l~~L~~L~Ls~N~i~~-i~~~~~~~~~L~~L~l~~N~i~~l--~~~~~l~~L  117 (198)
T d1m9la_          43 TLSTLKACKHLALSTNNIEKI-S-SLSGMENLRILSLGRNLIKK-IENLDAVADTLEELWISYNQIASL--SGIEKLVNL  117 (198)
T ss_dssp             HHHHTTTCCEEECSEEEESCC-C-CHHHHTTCCEEECCEEEECS-CSSHHHHHHHCCEEECSEEECCCH--HHHHHHHHS
T ss_pred             HHhcccccceeECcccCCCCc-c-cccCCccccChhhccccccc-cccccccccccccccccccccccc--ccccccccc
Confidence            344445555555555544421 1 24444455555555554442 222233334455555555544421  224444445


Q ss_pred             CEEeCCCCcCcccCC--ccccCCCCCCEEeCcCCCCc
Q 036117          590 QNLDIFDNQLTGKIP--AQLFRSSFLIRLNLRRNQLS  624 (641)
Q Consensus       590 ~~L~L~~n~l~~~ip--~~l~~~~~L~~l~l~~n~l~  624 (641)
                      +.|++++|+++ .++  ..+..+++|+.|++++|++.
T Consensus       118 ~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~L~~N~l~  153 (198)
T d1m9la_         118 RVLYMSNNKIT-NWGEIDKLAALDKLEDLLLAGNPLY  153 (198)
T ss_dssp             SEEEESEEECC-CHHHHHHHTTTTTCSEEEECSSHHH
T ss_pred             cccccccchhc-cccccccccCCCccceeecCCCccc
Confidence            55555555444 222  23444445555555555444

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=1e-08  Score=88.43  Aligned_cols=82  Identities=27%  Similarity=0.261  Sum_probs=47.1

Q ss_pred             CCCCCCcEEeCCCCcccccC--ChhhhcCCCCCEEeCcCCcCcccCCccccCCCCCCEEeCCCCcCcccCCcc-------
Q 036117          536 GIYPDLQYIDLGDNQLSGVL--TSNWGKCTNLSNFRISGNRIKGGIPAELGNLTYLQNLDIFDNQLTGKIPAQ-------  606 (641)
Q Consensus       536 ~~l~~L~~L~Ls~n~~~~~~--~~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~ip~~-------  606 (641)
                      ..++.|++|++++|+++...  +..+..+++|+.|++++|.++...+-.......|++|++++|++.+.....       
T Consensus        62 ~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~~i  141 (162)
T d1koha1          62 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYISAI  141 (162)
T ss_dssp             HHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHHHH
T ss_pred             HhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHHHH
Confidence            45667777777777766432  344566677777777777776432222233345677777777766443321       


Q ss_pred             ccCCCCCCEEe
Q 036117          607 LFRSSFLIRLN  617 (641)
Q Consensus       607 l~~~~~L~~l~  617 (641)
                      +..+++|+.||
T Consensus       142 ~~~~P~L~~LD  152 (162)
T d1koha1         142 RERFPKLLRLD  152 (162)
T ss_dssp             HTTSTTCCEET
T ss_pred             HHHCCCCCEEC
Confidence            33456666554

>d1koha1 c.10.2.3 (A:201-362) mRNA export factor tap {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: L domain-like
family: mRNA export factor tap
domain: mRNA export factor tap
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=4.7e-08  Score=84.05  Aligned_cols=84  Identities=21%  Similarity=0.204  Sum_probs=58.3

Q ss_pred             ccccCCCCcEEECCCCcCcccc--CcccCCCCCCcEEeCCCCcccccCChhhhcCCCCCEEeCcCCcCcccCCc------
Q 036117          510 SLWNCTGLTRVRLEQNRLDGDI--TNALGIYPDLQYIDLGDNQLSGVLTSNWGKCTNLSNFRISGNRIKGGIPA------  581 (641)
Q Consensus       510 ~l~~~~~L~~L~l~~n~l~~~~--~~~~~~l~~L~~L~Ls~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~------  581 (641)
                      ....++.|++|++++|+++...  +..+..+++|+.|++++|.++...+-.......|+.|++++|++......      
T Consensus        60 ~~~~~~~L~~L~Ls~N~i~~l~~~~~~~~~l~~L~~L~Ls~N~i~~l~~l~~l~~~~L~~L~L~~Npl~~~~~~~~~y~~  139 (162)
T d1koha1          60 IEENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSERELDKIKGLKLEELWLDGNSLSDTFRDQSTYIS  139 (162)
T ss_dssp             HHHHCTTCCCCCCCSSCCCCCSGGGTHHHHSTTCCCCCCTTSCCCCGGGHHHHTTCCCSSCCCTTSTTSSSSSSHHHHHH
T ss_pred             HHHhCCCCCEeeCCCccccCCchhHHHHhhCCcccccccccCccccchhhhhhhccccceeecCCCCcCcCcccchhHHH
Confidence            3456778888888888887532  34456788888888888888865443334455688888888888755432      


Q ss_pred             -cccCCCCCCEEe
Q 036117          582 -ELGNLTYLQNLD  593 (641)
Q Consensus       582 -~l~~l~~L~~L~  593 (641)
                       .+..+|+|+.||
T Consensus       140 ~i~~~~P~L~~LD  152 (162)
T d1koha1         140 AIRERFPKLLRLD  152 (162)
T ss_dssp             HHHTTSTTCCEET
T ss_pred             HHHHHCCCCCEEC
Confidence             256678888875

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.85  E-value=6.1e-06  Score=70.77  Aligned_cols=109  Identities=11%  Similarity=0.123  Sum_probs=61.8

Q ss_pred             CCCCcEEECCCC-cCccc----cCcccCCCCCCcEEeCCCCccccc----CChhhhcCCCCCEEeCcCCcCccc----CC
Q 036117          514 CTGLTRVRLEQN-RLDGD----ITNALGIYPDLQYIDLGDNQLSGV----LTSNWGKCTNLSNFRISGNRIKGG----IP  580 (641)
Q Consensus       514 ~~~L~~L~l~~n-~l~~~----~~~~~~~l~~L~~L~Ls~n~~~~~----~~~~~~~l~~L~~L~L~~n~l~~~----~p  580 (641)
                      .++|++|+|+++ .+...    +...+...+.|++|+|++|.+...    +.+.+...++|++|+|++|.+.+.    +-
T Consensus        14 ~~~L~~L~L~~~~~i~~~~~~~l~~~L~~n~~L~~L~Ls~n~l~~~~~~~la~~L~~n~~L~~L~L~~n~i~~~g~~~l~   93 (167)
T d1pgva_          14 DTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLL   93 (167)
T ss_dssp             CSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHH
T ss_pred             CCCCcEEEeCCCCCCCHHHHHHHHHHHhhCCccceeeccccccchhHHHHHhhhhhhcccccceeeehhhcchHHHHHHH
Confidence            455666666653 34322    233455566677777777766532    223444556777777777776532    22


Q ss_pred             ccccCCCCCCEEeCCCCcCcc---c----CCccccCCCCCCEEeCcCCC
Q 036117          581 AELGNLTYLQNLDIFDNQLTG---K----IPAQLFRSSFLIRLNLRRNQ  622 (641)
Q Consensus       581 ~~l~~l~~L~~L~L~~n~l~~---~----ip~~l~~~~~L~~l~l~~n~  622 (641)
                      ..+...++|++|++++|.+..   .    +...+...++|+.|+++.+.
T Consensus        94 ~aL~~n~sL~~L~l~~n~~~~~g~~~~~~l~~~L~~n~sL~~l~l~~~~  142 (167)
T d1pgva_          94 RSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS  142 (167)
T ss_dssp             HHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred             HHHHhCCcCCEEECCCCcCCCccHHHHHHHHHHHHhCCCccEeeCcCCC
Confidence            345556777777777765431   1    23344455777777776654

>d1pgva_ c.10.1.1 (A:) Tropomodulin C-terminal domain {nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.65  E-value=1.7e-05  Score=67.90  Aligned_cols=13  Identities=15%  Similarity=-0.077  Sum_probs=6.6

Q ss_pred             CCCCCCEEeCCCC
Q 036117          585 NLTYLQNLDIFDN  597 (641)
Q Consensus       585 ~l~~L~~L~L~~n  597 (641)
                      ..++|+.|+++.+
T Consensus       129 ~n~sL~~l~l~~~  141 (167)
T d1pgva_         129 ENESLLRVGISFA  141 (167)
T ss_dssp             HCSSCCEEECCCC
T ss_pred             hCCCccEeeCcCC
Confidence            3455555555444

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.40  E-value=4.1e-05  Score=65.41  Aligned_cols=112  Identities=18%  Similarity=0.183  Sum_probs=69.0

Q ss_pred             ccCCCCcEEECCC-CcCccc----cCcccCCCCCCcEEeCCCCcccccC----ChhhhcCCCCCEEeCcCCcCccc----
Q 036117          512 WNCTGLTRVRLEQ-NRLDGD----ITNALGIYPDLQYIDLGDNQLSGVL----TSNWGKCTNLSNFRISGNRIKGG----  578 (641)
Q Consensus       512 ~~~~~L~~L~l~~-n~l~~~----~~~~~~~l~~L~~L~Ls~n~~~~~~----~~~~~~l~~L~~L~L~~n~l~~~----  578 (641)
                      .+.++|++|++++ +.++..    +...+...+.|++|++++|.++...    ...+...++++.+++++|.+...    
T Consensus        14 ~~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~~~g~~~   93 (166)
T d1io0a_          14 NNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA   93 (166)
T ss_dssp             TTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred             hcCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhccccccchhHHH
Confidence            3456677777776 345322    2344556777888888887766432    23445567788888888776432    


Q ss_pred             CCccccCCCCCCEEeC--CCCcCccc----CCccccCCCCCCEEeCcCCCC
Q 036117          579 IPAELGNLTYLQNLDI--FDNQLTGK----IPAQLFRSSFLIRLNLRRNQL  623 (641)
Q Consensus       579 ~p~~l~~l~~L~~L~L--~~n~l~~~----ip~~l~~~~~L~~l~l~~n~l  623 (641)
                      +...+...++|+.++|  ++|.+...    +...+...+.|+.|+++.++.
T Consensus        94 l~~~l~~~~~L~~l~L~l~~n~i~~~~~~~La~~L~~n~~L~~L~l~~~~~  144 (166)
T d1io0a_          94 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ  144 (166)
T ss_dssp             HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred             HHHHHHhCccccEEeeccCCCcCcHHHHHHHHHHHHhCCCcCEEeCcCCCC
Confidence            2345566677876544  45666432    344455678888888877654

>d1io0a_ c.10.1.1 (A:) Tropomodulin C-terminal domain {Chicken (Gallus gallus) [TaxId: 9031]}

class: Alpha and beta proteins (a/b)
fold: Leucine-rich repeat, LRR (right-handed beta-alpha superhelix)
superfamily: RNI-like
family: 28-residue LRR
domain: Tropomodulin C-terminal domain
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.08  E-value=3.4e-05  Score=65.97  Aligned_cols=64  Identities=17%  Similarity=0.232  Sum_probs=31.0

Q ss_pred             CCCCCCEEECCC-CCCCcc----CchhccCCCCCCEEECCCCcCCCC----CccccCCCCCCCEEEcccccCC
Q 036117           86 AFPNLTALNLNM-NNLVGS----IPAGIGNATKLILLDLSSNNLTNP----IPPEIGYLSDLRVLLLYNNSLT  149 (641)
Q Consensus        86 ~l~~L~~L~L~~-n~~~~~----~~~~l~~l~~L~~L~L~~n~l~~~----~p~~l~~l~~L~~L~l~~n~~~  149 (641)
                      +.+.|++|++++ +.++..    +..++...++|++|++++|.++..    +...+...+.++.+++++|.+.
T Consensus        15 ~~~~L~~L~L~~~~~i~~~~~~~l~~al~~n~~L~~L~Ls~n~l~~~~~~~L~~~l~~~~~l~~l~l~~~~~~   87 (166)
T d1io0a_          15 NDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS   87 (166)
T ss_dssp             TCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred             cCCCCcEEEcCCCCCCCHHHHHHHHHHHhcCCccCeeeccCCcccHHHHHHHHHHHhhcccchhhhhcccccc
Confidence            445666666665 334322    223344556666666666655432    1122233445555555555443