Citrus Sinensis ID: 036120

Local Sequence Feature Prediction

Prediction and (Method)Result
Residue Number Marker
Protein Sequence ?
Secondary Structure (PSIPRED) ?
Secondary Structure Prediction (SSPRO) ?
Coil and Loop (DISEMBL) ?
Flexible Loop (DISEMBL) ?
Low Complexity Region (SEG) ?
Disordered region (IsUnstruct) ?
Disordered Region (DISOPRED) ?
Disordered Region (DISEMBL) ?
Disordered Region (DISPRO) ?
Transmembrane Helix (TMHMM) ?
Transmembrane Helix (HMMTOP) ?
Transmembrane Helix (MEMSAT) ?
TM Helix, Signal Peptide (MEMSAT_SVM) ?
TM Helix, Signal Peptide (Phobius) ?
Signal Peptide (SignalP HMM Mode) ?
Signal Peptide (SignalP NN Mode) ?
Coiled Coils (COILS) ?
Positional Conservation ?
 
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510-------520-------530-------540-------550-------560-------570-------580-------590-------600-------610-------620-------630-------640-------650-------660-------670-------680-------690-------700-------710-------720-------730-------740-------750-------760-------770-------78
MMLSGDEDEEKWLAEGIAGVQHNAFYMHRALDSNNLREALKYSAQMLSELRTSKLSPHKYYELYMRAFDELRKLEMFFKDESRHGVSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKEAPAKEVLKDLVEMCRGVQHPIRGLFLRSYLAQVSRDKLPDIGSEYERDAETVMDAVEFVLQNFTEMNKLWVRMQHQGPGRVREKREKERNELRDLVGKNLHVLSQIEGVDLEMYKENVLPRVLEQVVNCKDELAQYYLMDCIIQVFPDEYHLQTLETLLGACPQLQPTVDIKTVLSRLMDRLSNYAVSSADVLPEFLQVEAFAKLSNAIGKVIDAQVDMPIVGAISLYVSLLTFTLRVHPDRLDYVDQVLGACVKKLSSAPKLEDSRATKQVVALLSAPLDKYNDILMDHLDDGTNKVMAMVIIQSIMKNSTCISTAEKVEVLFELIKGLIKDLDGAAQDELDEEDFKEEQNSVARLIHMLYNDDSEEMLKIICTVRKHIMTGGPKRLPFTVPPLVFSALRLVRQLQNQDGDVAGEEEPATPKKIFQLLNQTIETLLYVPSPEMALRLYLQCAEAANDCDLEPVAYEFFTQAFMLYEEEIADSKAQVTAIHLIIGTLQRISVFGIENRDTLTHKATGYSARLLKKPDQCRAVYACSHLFWVDDQDGIKDGERVLLCLKRALRIANAAQQMANVARGSSGPVVLFVEILNKYLYFFEKGNTQITASAIQSLIELITSEMQSESTTLDPADNAFFASTKRYIEFQKKKGGAMGEKYDPINV
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHcccccHHHHHHHHHcccHHHHHHHHHHHHHHcccHHHHHcHHHHHHHcccccccccHHHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHcHHHHHHHHHHcccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHccccccccHHHHHHHHHHHHHHHccccHHHHHHHHHHHccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHcccccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHHcccccccccccccc
cccccHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHcccccHEEEEEEEcEEEEEcccccHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHccccccccccHHHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHccHHHHHHHHHHHcccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHccccccEEEccHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHHHHHEHHHHcccccccHHHHHHHHHHHHHHHHcccccccHHHHHHHHHHHHHHHHHHccccccccccccccc
MMLSGDEDEEKWLAEGIAGVQHNAFYMHRALDSNNLREALKYSAQMLSELrtsklsphkYYELYMRAFDELRKLEMFFkdesrhgvsiIDLYELVQHAGNILPRLYLLCTVGsvyikskeapAKEVLKDLVEMCRGVQHPIRGLFLRSYLAQvsrdklpdigseyeRDAETVMDAVEFVLQNFTEMNKLWVRMQhqgpgrvreKREKERNELRDLVGKNLHVLsqiegvdlemykenvlPRVLEQVVNCKDELAQYYLMDCIiqvfpdeyhLQTLETLLgacpqlqptvdIKTVLSRLMDRLSnyavssadvlpeFLQVEAFAKLSNAIGKVIDAQVDMPIVGAISLYVSLLTFTlrvhpdrldYVDQVLGACVKKlssapkledsrATKQVVALLSAPLDKYNDILMDHLDDGTNKVMAMVIIQSIMKNSTCISTAEKVEVLFELIKGLIKDLDgaaqdeldeeDFKEEQNSVARLIHMLYNDDSEEMLKIICTVRKhimtggpkrlpftvpplVFSALRLVRQLQNqdgdvageeepatpKKIFQLLNQTIETllyvpspeMALRLYLQCAEaandcdlepvaYEFFTQAFMLYEEEIADSKAQVTAIHLIIGTLQrisvfgienrdtlthkatgysarllkkpdqcravyacshlfwvddqdgikdGERVLLCLKRALRIANAAQQMANvargssgpVVLFVEILNKYLYFFEKGNTQITASAIQSLIELITSEmqsesttldpadnaffASTKRYIEFQKkkggamgekydpinv
MMLSGDEDEEKWLAEGIAGVQHNAFYMHRALDSNNLREALKYSAQMLSELrtsklsphkyYELYMRAFDELRKLEMFFKDESRHGVSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKEAPAKEVLKDLVEMCRGVQHPIRGLFLRSYLAQVSRDKLPDIGSEYERDAETVMDAVEFVLQNFTEMNKLWVRmqhqgpgrvrekreKERNElrdlvgknlhvlsqiegvdlEMYKENVLPRVLEQVVNCKDELAQYYLMDCIIQVFPDEYHLQTLETLLGACPQLQPTVDIKTVLSRLMDRLSNYAVSSADVLPEFLQVEAFAKLSNAIGKVIDAQVDMPIVGAISLYVSLLTFTLRVHPDRLDYVDQVLGACVKKlssapkledsraTKQVVALLSAPLDKYNDILMDHLDDGTNKVMAMVIIQSIMKNSTCISTAEKVEVLFELIKGLIKDLDGAAQDELDEEDFKEEQNSVARLIHMLYNDDSEEMLKIICTVRKHIMTGGPKRLPFTVPPLVFSALRLVRQLQNQDGDVAGEEEPATPKKIFQLLNQTIETLLYVPSPEMALRLYLQCAEAANDCDLEPVAYEFFTQAFMLYEEEIADSKAQVTAIHLIIGTLQRISVFGIENRDTLTHKATGYSARLLKKPDQCRAVYACSHLfwvddqdgiKDGERVLLCLKRALRIANAAQQManvargssgPVVLFVEILNKYLYFFEKGNTQITASAIQSLIELITSEMQSESTTLDPADNAFFASTKRYIEFQkkkggamgekydpinv
MMLSGDEDEEKWLAEGIAGVQHNAFYMHRALDSNNLREALKYSAQMLSELRTSKLSPHKYYELYMRAFDELRKLEMFFKDESRHGVSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKEAPAKEVLKDLVEMCRGVQHPIRGLFLRSYLAQVSRDKLPDIGSEYERDAETVMDAVEFVLQNFTEMNKLWVRMQHQGPGrvrekrekernelrDLVGKNLHVLSQIEGVDLEMYKENVLPRVLEQVVNCKDELAQYYLMDCIIQVFPDEYHLQTLETLLGACPQLQPTVDIKTVLSRLMDRLSNYAVSSADVLPEFLQVEAFAKLSNAIGKVIDAQVDMPIVGAISLYVSLLTFTLRVHPDRLDYVDQVLGACVKKLSSAPKLEDSRATKQVVALLSAPLDKYNDILMDHLDDGTNKVMAMVIIQSIMKNSTCISTAEKVEVLFELIKGLIKDLDGAAQDELDEEDFKEEQNSVARLIHMLYNDDSEEMLKIICTVRKHIMTGGPKRLPFTVPPLVFSALRLVRQLQNQDGDVAGEEEPATPKKIFQLLNQTIETLLYVPSPEMALRLYLQCAEAANDCDLEPVAYEFFTQAFMLYEEEIADSKAQVTAIHLIIGTLQRISVFGIENRDTLTHKATGYSARLLKKPDQCRAVYACSHLFWVDDQDGIKDGERVLLCLKRALRIANAAQQMANVARGSSGPVVLFVEILNKYLYFFEKGNTQITASAIQSLIELITSEMQSESTTLDPADNAFFASTKRYIEFQKKKGGAMGEKYDPINV
***********WLAEGIAGVQHNAFYMHRALDSNNLREALKYSAQMLSELRTSKLSPHKYYELYMRAFDELRKLEMFFKDESRHGVSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKEAPAKEVLKDLVEMCRGVQHPIRGLFLRSYLAQVSRDKLPDIGSEYERDAETVMDAVEFVLQNFTEMNKLWVRM********************DLVGKNLHVLSQIEGVDLEMYKENVLPRVLEQVVNCKDELAQYYLMDCIIQVFPDEYHLQTLETLLGACPQLQPTVDIKTVLSRLMDRLSNYAVSSADVLPEFLQVEAFAKLSNAIGKVIDAQVDMPIVGAISLYVSLLTFTLRVHPDRLDYVDQVLGACVKKLS**********TKQVVALLSAPLDKYNDILMDHLDDGTNKVMAMVIIQSIMKNSTCISTAEKVEVLFELIKGLIKDLDG*****************VARLIHMLYNDDSEEMLKIICTVRKHIMTGGPKRLPFTVPPLVFSALRLVRQL*****************KIFQLLNQTIETLLYVPSPEMALRLYLQCAEAANDCDLEPVAYEFFTQAFMLYEEEIADSKAQVTAIHLIIGTLQRISVFGIENRDTLTHKATGYSARLLKKPDQCRAVYACSHLFWVDDQDGIKDGERVLLCLKRALRIANAAQQMANVARGSSGPVVLFVEILNKYLYFFEKGNTQITASAIQSLIELIT***************AFFASTKRYIE******************
****G*E*EEKWLAEGIAGVQHNAFYMHRALDSNNLREALKYSAQMLSELRTSKLSPHKYYELYMRAFDELRKLEMFFKDESRHGVSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKEAPAKEVLKDLVEMCRGVQHPIRGLFLRSYLAQVSRDKLPDIGSEYERDAETVMDAVEFVLQNFTEMNKLWVRMQ****************ELRDLVGKNLHVLSQIEGVDLEMYKENVLPRVLEQVVNCKDELAQYYLMDCIIQVFPDEYHLQTLETLLGACPQLQPTVDIKTVLSRLMDRLSNYAV************EAFAKLSNAIGK***********GAISLYVSLLTFTLRVHPDRLDYVDQVLGACVKKLSSAP***DSRATKQVVALLSAPLDKYNDILMDHLDDGTNKVMAMVIIQSIMKNSTCISTAEKVEVLFELIKGLI****************KEEQNSVARLIHMLYNDDSEEMLKIICTVRKHIMTGGPKRLPFTVPPLVFSALRLVRQLQN**********PATPKKIFQLLNQTIETLLYVPSPEMALRLYLQCAEAANDCDLEPVAYEFFTQAFMLYEEEIADSKAQVTAIHLIIGTLQRISVFGIENRDTLTHKATGYSARLLKKPDQCRAVYACSHLFWVDDQ***K*GERVLLCLKRALRIANAAQQMANVARGSSGPVVLFVEILNKYLYFFEKGNTQITASAIQSLIELIT****************FFASTKRYI************KYDPINV
**********KWLAEGIAGVQHNAFYMHRALDSNNLREALKYSAQMLSELRTSKLSPHKYYELYMRAFDELRKLEMFFKDESRHGVSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKEAPAKEVLKDLVEMCRGVQHPIRGLFLRSYLAQVSRDKLPDIGSEYERDAETVMDAVEFVLQNFTEMNKLWVRMQ****************ELRDLVGKNLHVLSQIEGVDLEMYKENVLPRVLEQVVNCKDELAQYYLMDCIIQVFPDEYHLQTLETLLGACPQLQPTVDIKTVLSRLMDRLSNYAVSSADVLPEFLQVEAFAKLSNAIGKVIDAQVDMPIVGAISLYVSLLTFTLRVHPDRLDYVDQVLGACVKKLSSAPKLEDSRATKQVVALLSAPLDKYNDILMDHLDDGTNKVMAMVIIQSIMKNSTCISTAEKVEVLFELIKGLIKDLDGAAQDELDEEDFKEEQNSVARLIHMLYNDDSEEMLKIICTVRKHIMTGGPKRLPFTVPPLVFSALRLVRQLQNQDGDVAGEEEPATPKKIFQLLNQTIETLLYVPSPEMALRLYLQCAEAANDCDLEPVAYEFFTQAFMLYEEEIADSKAQVTAIHLIIGTLQRISVFGIENRDTLTHKATGYSARLLKKPDQCRAVYACSHLFWVDDQDGIKDGERVLLCLKRALRIANAAQQMANVARGSSGPVVLFVEILNKYLYFFEKGNTQITASAIQSLIELITSEMQSESTTLDPADNAFFASTKRYIEFQKKKGGAMGEKYDPINV
****GDEDEEKWLAEGIAGVQHNAFYMHRALDSNNLREALKYSAQMLSELRTSKLSPHKYYELYMRAFDELRKLEMFFKDESRHGVSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKEAPAKEVLKDLVEMCRGVQHPIRGLFLRSYLAQVSRDKLPDIGSEYERDAETVMDAVEFVLQNFTEMNKLWVRMQHQGPGRVREKREKERNELRDLVGKNLHVLSQIEGVDLEMYKENVLPRVLEQVVNCKDELAQYYLMDCIIQVFPDEYHLQTLETLLGACPQLQPTVDIKTVLSRLMDRLSNYAVSSADVLPEFLQVEAFAKLSNAIGKVIDAQVDMPIVGAISLYVSLLTFTLRVHPDRLDYVDQVLGACVKKLSSAPKLEDSRATKQVVALLSAPLDKYNDILMDHLDDGTNKVMAMVIIQSIMKNSTCISTAEKVEVLFELIKGLIKDLDGAAQDELDEEDFKEEQNSVARLIHMLYNDDSEEMLKIICTVRKHIMTGGPKRLPFTVPPLVFSALRLVRQLQNQDGDVAGEEEPATPKKIFQLLNQTIETLLYVPSPEMALRLYLQCAEAANDCDLEPVAYEFFTQAFMLYEEEIADSKAQVTAIHLIIGTLQRISVFGIENRDTLTHKATGYSARLLKKPDQCRAVYACSHLFWVDDQDGIKDGERVLLCLKRALRIANAAQQMANVARGSSGPVVLFVEILNKYLYFFEKGNTQITASAIQSLIELITSEMQSESTTLDPADNAFFASTKRYIEFQKK**************
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MMLSGDEDEEKWLAEGIAGVQHNAFYMHRALDSNNLREALKYSAQMLSELRTSKLSPHKYYELYMRAFDELRKLEMFFKDESRHGVSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKEAPAKEVLKDLVEMCRGVQHPIRGLFLRSYLAQVSRDKLPDIGSEYERDAETVMDAVEFVLQNFTEMNKLWVRMQHQGPGRVREKREKERNELRDLVGKNLHVLSQIEGVDLEMYKENVLPRVLEQVVNCKDELAQYYLMDCIIQVFPDEYHLQTLETLLGACPQLQPTVDIKTVLSRLMDRLSNYAVSSADVLPEFLQVEAFAKLSNAIGKVIDAQVDMPIVGAISLYVSLLTFTLRVHPDRLDYVDQVLGACVKKLSSAPKLEDSRATKQVVALLSAPLDKYNDILMDHLDDGTNKVMAMVIIQSIMKNSTCISTAEKVEVLFELIKGLIKDLDGAAQDELDEEDFKEEQNSVARLIHMLYNDDSEEMLKIICTVRKHIMTGGPKRLPFTVPPLVFSALRLVRQLQNQDGDVAGEEEPATPKKIFQLLNQTIETLLYVPSPEMALRLYLQCAEAANDCDLEPVAYEFFTQAFMLYEEEIADSKAQVTAIHLIIGTLQRISVFGIENRDTLTHKATGYSARLLKKPDQCRAVYACSHLFWVDDQDGIKDGERVLLCLKRALRIANAAQQMANVARGSSGPVVLFVEILNKYLYFFEKGNTQITASAIQSLIELITSEMQSESTTLDPADNAFFASTKRYIEFQKKKGGAMGEKYDPINV
no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST ?

Original result of BLAST against SWISS-PROT Database

ID ?Alignment graph ?Length ? Definition ? RBH(Q2H) ? RBH(H2Q) ? Q cover ? H cover ? Identity ? E-value ?
Query779 2.2.26 [Sep-21-2011]
F4I0P8790 Vacuolar protein sorting- yes no 0.996 0.982 0.827 0.0
Q7X659787 Vacuolar protein sorting- no no 0.996 0.986 0.721 0.0
A8R7K9790 Vacuolar protein sorting- no no 0.987 0.973 0.683 0.0
Q9EQH3796 Vacuolar protein sorting- yes no 0.973 0.952 0.451 1e-173
Q2HJG5796 Vacuolar protein sorting- yes no 0.973 0.952 0.451 1e-173
Q96QK1796 Vacuolar protein sorting- yes no 0.973 0.952 0.45 1e-173
Q54C24781 Vacuolar sorting protein yes no 0.958 0.956 0.431 1e-169
O74552836 Vacuolar protein sorting- yes no 0.922 0.860 0.335 1e-116
P34110 944 Vacuolar protein sorting- yes no 0.451 0.372 0.414 3e-71
>sp|F4I0P8|VP35B_ARATH Vacuolar protein sorting-associated protein 35B OS=Arabidopsis thaliana GN=VPS35B PE=1 SV=1 Back     alignment and function desciption
 Score = 1360 bits (3520), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 652/788 (82%), Positives = 717/788 (90%), Gaps = 12/788 (1%)

Query: 3   LSGDEDEEKWLAEGIAGVQHNAFYMHRALDSNNLREALKYSAQMLSELRTSKLSPHKYYE 62
           L+G EDE+KWLAEGIAG+QHNAF+MHRALD+NNLRE LKYSA MLSELRTSKLSP KYY+
Sbjct: 4   LAGVEDEDKWLAEGIAGIQHNAFFMHRALDANNLREVLKYSALMLSELRTSKLSPQKYYD 63

Query: 63  LYMRAFDELRKLEMFFKDESRHGVSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKEAP 122
           LYMRAFD+LR+LE+FFKDESRHG+ ++DLYELVQHAGNILPR+YLLCTVGSVYIKSK+AP
Sbjct: 64  LYMRAFDQLRQLEIFFKDESRHGLPVVDLYELVQHAGNILPRMYLLCTVGSVYIKSKQAP 123

Query: 123 AKEVLKDLVEMCRGVQHPIRGLFLRSYLAQVSRDKLPDIGSEYERDAETVMDAVEFVLQN 182
           +K+VLKDLVEMCRGVQHPIRGLFLRSYLAQVSRDKLP+IGS+YE DA TVMDAVEFVLQN
Sbjct: 124 SKDVLKDLVEMCRGVQHPIRGLFLRSYLAQVSRDKLPEIGSDYEGDANTVMDAVEFVLQN 183

Query: 183 FTEMNKLWVRMQHQGPGRVREKREKERNELRDLVGKNLHVLSQIEGVDLEMYKENVLPRV 242
           FTEMNKLWVR+QHQGPG VREK+EKERNELRDLVGKNLHVL QIEGVDLEMYKE VLPRV
Sbjct: 184 FTEMNKLWVRIQHQGPGTVREKQEKERNELRDLVGKNLHVLGQIEGVDLEMYKETVLPRV 243

Query: 243 LEQVVNCKDELAQYYLMDCIIQVFPDEYHLQTLETLLGACPQLQPTVDIKTVLSRLMDRL 302
           LEQVVNCKD+LAQYYLM+CIIQVFPDEYHLQTLETLL AC QL PTVD K VL++LMDRL
Sbjct: 244 LEQVVNCKDKLAQYYLMECIIQVFPDEYHLQTLETLLAACTQLMPTVDTKIVLTQLMDRL 303

Query: 303 SNYAVSSADVLPEFLQVEAFAKLSNAIGKVIDAQVDMPIVGAISLYVSLLTFTLRVHPDR 362
           SNYA SS DVL EFLQVEAFAKLSNAIGKVID Q++MPIVGA++L+VSLLTFTLRVHPDR
Sbjct: 304 SNYAASSPDVLHEFLQVEAFAKLSNAIGKVIDTQLEMPIVGAMTLFVSLLTFTLRVHPDR 363

Query: 363 LDYVDQVLGACVKKLSSAPKLEDSRATKQVVALLSAPLDKYNDI-----------LMDHL 411
           LDYVDQVLGACV KLSS PKLED+RA KQVVALLSAPL+KY+DI           +MDHL
Sbjct: 364 LDYVDQVLGACVVKLSSVPKLEDARAMKQVVALLSAPLEKYSDIVTALTLSNYPRVMDHL 423

Query: 412 DDGTNKVMAMVIIQSIMKNSTCISTAEKVEVLFELIKGLIKDLDGAAQDELDEEDFKEEQ 471
           DDGTNKVMAM+IIQSIMK  +CISTA+KVEVLFELIKGLIKDLD    +ELDEEDF+EEQ
Sbjct: 424 DDGTNKVMAMLIIQSIMKTDSCISTADKVEVLFELIKGLIKDLDETNAEELDEEDFQEEQ 483

Query: 472 NSVARLIHMLYNDDSEEMLKIICTVRKHIMTGGPKRLPFTVPPLVFSALRLVRQLQNQDG 531
           NSVARLIHML N++ EEMLKIIC VR+H+MTGGP+RLPFTVPPLVFSA+RLVRQL++Q G
Sbjct: 484 NSVARLIHMLDNEEPEEMLKIICVVRRHLMTGGPRRLPFTVPPLVFSAVRLVRQLESQGG 543

Query: 532 DVAGEEEPATPKKIFQLLNQTIETLLYVPSPEMALRLYLQCAEAANDCDLEPVAYEFFTQ 591
           D+AGE+  ATP+KIFQ+LNQTIE L  VP PE+ALRLYLQCAEAA+DCDLEPVAYEFFTQ
Sbjct: 544 DIAGEDS-ATPRKIFQILNQTIEVLTSVPCPELALRLYLQCAEAASDCDLEPVAYEFFTQ 602

Query: 592 AFMLYEEEIADSKAQVTAIHLIIGTLQRISVFGIENRDTLTHKATGYSARLLKKPDQCRA 651
           AFMLYEEEIADSKAQVTAIHLI+GTLQRI+VFG+ENRDTLTHKATGYSARLLKKPDQCRA
Sbjct: 603 AFMLYEEEIADSKAQVTAIHLIVGTLQRINVFGVENRDTLTHKATGYSARLLKKPDQCRA 662

Query: 652 VYACSHLFWVDDQDGIKDGERVLLCLKRALRIANAAQQMANVARGSSGPVVLFVEILNKY 711
           VYACSHLFWVDD DGIKDGERVLLCL+RALRIANAAQQMA+  RGSSGPV LFVEILNKY
Sbjct: 663 VYACSHLFWVDDPDGIKDGERVLLCLRRALRIANAAQQMASATRGSSGPVTLFVEILNKY 722

Query: 712 LYFFEKGNTQITASAIQSLIELITSEMQSESTTLDPADNAFFASTKRYIEFQKKKGGAMG 771
           +YFFEKGN  IT S IQSLIELI +EMQS++       + FF ST RYI+F K+KGG MG
Sbjct: 723 IYFFEKGNPHITPSDIQSLIELINNEMQSDNGNTTIHSDPFFTSTLRYIKFIKQKGGLMG 782

Query: 772 EKYDPINV 779
           EKYDPI +
Sbjct: 783 EKYDPIKL 790
Plays a role in vesicular protein sorting. Component of the membrane-associated retromer complex which is essential in endosome-to-Golgi retrograde transport. Also involved in the efficient sorting of seed storage proteins globulin 12S and albumin 2S. The VPS29-VPS26-VPS35 subcomplex may be involved in recycling of specific cargos from endosome to the plasma membrane.
Arabidopsis thaliana (taxid: 3702)
>sp|Q7X659|VP35A_ARATH Vacuolar protein sorting-associated protein 35A OS=Arabidopsis thaliana GN=VPS35A PE=2 SV=1 Back     alignment and function description
>sp|A8R7K9|VP35C_ARATH Vacuolar protein sorting-associated protein 35C OS=Arabidopsis thaliana GN=VPS35C PE=2 SV=1 Back     alignment and function description
>sp|Q9EQH3|VPS35_MOUSE Vacuolar protein sorting-associated protein 35 OS=Mus musculus GN=Vps35 PE=1 SV=1 Back     alignment and function description
>sp|Q2HJG5|VPS35_BOVIN Vacuolar protein sorting-associated protein 35 OS=Bos taurus GN=VPS35 PE=2 SV=1 Back     alignment and function description
>sp|Q96QK1|VPS35_HUMAN Vacuolar protein sorting-associated protein 35 OS=Homo sapiens GN=VPS35 PE=1 SV=2 Back     alignment and function description
>sp|Q54C24|VPS35_DICDI Vacuolar sorting protein 35 OS=Dictyostelium discoideum GN=vps35 PE=3 SV=1 Back     alignment and function description
>sp|O74552|VPS35_SCHPO Vacuolar protein sorting-associated protein 35 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) GN=vps35 PE=1 SV=2 Back     alignment and function description
>sp|P34110|VPS35_YEAST Vacuolar protein sorting-associated protein 35 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=VPS35 PE=1 SV=2 Back     alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST ?

Original result of BLAST against Nonredundant Database

GI ?Alignment Graph ?Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query779
225457911790 PREDICTED: vacuolar protein sorting-asso 0.989 0.975 0.882 0.0
225457913787 PREDICTED: vacuolar protein sorting-asso 0.985 0.975 0.873 0.0
317106600790 JHL20J20.15 [Jatropha curcas] 1.0 0.986 0.837 0.0
224085912790 predicted protein [Populus trichocarpa] 1.0 0.986 0.845 0.0
449437192803 PREDICTED: vacuolar protein sorting-asso 1.0 0.970 0.821 0.0
224061981789 predicted protein [Populus trichocarpa] 0.998 0.986 0.851 0.0
125546075793 hypothetical protein OsI_13933 [Oryza sa 0.993 0.976 0.821 0.0
297842331791 hypothetical protein ARALYDRAFT_895460 [ 0.997 0.982 0.827 0.0
356553365797 PREDICTED: vacuolar protein sorting-asso 1.0 0.977 0.831 0.0
356564375798 PREDICTED: vacuolar protein sorting-asso 1.0 0.976 0.837 0.0
>gi|225457911|ref|XP_002272227.1| PREDICTED: vacuolar protein sorting-associated protein 35 isoform 1 [Vitis vinifera] Back     alignment and taxonomy information
 Score = 1452 bits (3758), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 690/782 (88%), Positives = 742/782 (94%), Gaps = 11/782 (1%)

Query: 7   EDEEKWLAEGIAGVQHNAFYMHRALDSNNLREALKYSAQMLSELRTSKLSPHKYYELYMR 66
           EDE+KWLAEGIAG+QHNAFYMHR++DSNNLRE LKYSAQMLSELRTS+LSPHKYYELYMR
Sbjct: 7   EDEDKWLAEGIAGIQHNAFYMHRSVDSNNLREVLKYSAQMLSELRTSRLSPHKYYELYMR 66

Query: 67  AFDELRKLEMFFKDESRHGVSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKEAPAKEV 126
           AFDELRKLE+FFKDESRHG SIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKEAP K+V
Sbjct: 67  AFDELRKLEIFFKDESRHGCSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKEAPPKDV 126

Query: 127 LKDLVEMCRGVQHPIRGLFLRSYLAQVSRDKLPDIGSEYERDAETVMDAVEFVLQNFTEM 186
           LKDLVEMCRG+QHPIRGLFLRSYL+QVSRDKLPDIGS+YE DA+TVMDAVEFVLQNFTEM
Sbjct: 127 LKDLVEMCRGIQHPIRGLFLRSYLSQVSRDKLPDIGSDYEGDADTVMDAVEFVLQNFTEM 186

Query: 187 NKLWVRMQHQGPGRVREKREKERNELRDLVGKNLHVLSQIEGVDLEMYKENVLPRVLEQV 246
           NKLWVRMQHQGPGR +EK+EKER+ELRDLVGKNLHVLSQIEG+DLEMYK+ VLPRVLEQV
Sbjct: 187 NKLWVRMQHQGPGRAKEKQEKERSELRDLVGKNLHVLSQIEGIDLEMYKDTVLPRVLEQV 246

Query: 247 VNCKDELAQYYLMDCIIQVFPDEYHLQTLETLLGACPQLQPTVDIKTVLSRLMDRLSNYA 306
           VNCKDELAQYYLMDCIIQVFPDEYHLQTLETLLGACPQLQPTVDIKTVLS+LM+RLSNYA
Sbjct: 247 VNCKDELAQYYLMDCIIQVFPDEYHLQTLETLLGACPQLQPTVDIKTVLSQLMERLSNYA 306

Query: 307 VSSADVLPEFLQVEAFAKLSNAIGKVIDAQVDMPIVGAISLYVSLLTFTLRVHPDRLDYV 366
            SSA+VLP+FLQVEAFAKLS+AIGKVI+AQVDMP+ GAI+LYVSLLTFTLRVHPDRLDYV
Sbjct: 307 ASSAEVLPDFLQVEAFAKLSSAIGKVIEAQVDMPVFGAITLYVSLLTFTLRVHPDRLDYV 366

Query: 367 DQVLGACVKKLSSAPKLEDSRATKQVVALLSAPLDKYNDI-----------LMDHLDDGT 415
           DQVLGACVKKLS  PKLEDS+ATKQ+VALLSAPL+KYNDI           +MDHLD+GT
Sbjct: 367 DQVLGACVKKLSGKPKLEDSKATKQIVALLSAPLEKYNDIVTALTLSNYPRVMDHLDNGT 426

Query: 416 NKVMAMVIIQSIMKNSTCISTAEKVEVLFELIKGLIKDLDGAAQDELDEEDFKEEQNSVA 475
           NK+MAMVIIQSIMKNSTCISTA+KVE LFELIKGLIKDLDG   DELDEEDFK+EQNSVA
Sbjct: 427 NKIMAMVIIQSIMKNSTCISTADKVEALFELIKGLIKDLDGFPVDELDEEDFKDEQNSVA 486

Query: 476 RLIHMLYNDDSEEMLKIICTVRKHIMTGGPKRLPFTVPPLVFSALRLVRQLQNQDGDVAG 535
           RLIHM YNDD EEMLKIICTV+KHIMTGG +RLPFTVPPL+FSALRLVR+LQ Q+GDV G
Sbjct: 487 RLIHMFYNDDPEEMLKIICTVKKHIMTGGLRRLPFTVPPLIFSALRLVRRLQGQEGDVVG 546

Query: 536 EEEPATPKKIFQLLNQTIETLLYVPSPEMALRLYLQCAEAANDCDLEPVAYEFFTQAFML 595
           EEEPATPKKIFQLLNQTIE L  VPSPE+ALRLYLQCAEAANDCDLEPVAYEFFTQAF+L
Sbjct: 547 EEEPATPKKIFQLLNQTIEALSSVPSPELALRLYLQCAEAANDCDLEPVAYEFFTQAFIL 606

Query: 596 YEEEIADSKAQVTAIHLIIGTLQRISVFGIENRDTLTHKATGYSARLLKKPDQCRAVYAC 655
           YEEEIADSKAQVTAIHLIIGTLQR++VFG+ENRDTLTHKATGYSA+LLKKPDQCRAVYAC
Sbjct: 607 YEEEIADSKAQVTAIHLIIGTLQRMNVFGVENRDTLTHKATGYSAKLLKKPDQCRAVYAC 666

Query: 656 SHLFWVDDQDGIKDGERVLLCLKRALRIANAAQQMANVARGSSGPVVLFVEILNKYLYFF 715
           SHLFWVDDQDGIKDGERV+LCLKRALRIANAAQQMA VARGSSGPV+LFVEILNKY+YFF
Sbjct: 667 SHLFWVDDQDGIKDGERVMLCLKRALRIANAAQQMATVARGSSGPVILFVEILNKYIYFF 726

Query: 716 EKGNTQITASAIQSLIELITSEMQSESTTLDPADNAFFASTKRYIEFQKKKGGAMGEKYD 775
           EKGN+Q+T+SAIQ LIELITSEMQSESTT DP  +AFFAST RYI+FQK+KGGAMGEKYD
Sbjct: 727 EKGNSQVTSSAIQGLIELITSEMQSESTTPDPPSDAFFASTMRYIQFQKQKGGAMGEKYD 786

Query: 776 PI 777
            I
Sbjct: 787 SI 788

Source: Vitis vinifera

Species: Vitis vinifera

Genus: Vitis

Family: Vitaceae

Order: Vitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota
>gi|225457913|ref|XP_002272268.1| PREDICTED: vacuolar protein sorting-associated protein 35 isoform 2 [Vitis vinifera] Back     alignment and taxonomy information
>gi|317106600|dbj|BAJ53108.1| JHL20J20.15 [Jatropha curcas] Back     alignment and taxonomy information
>gi|224085912|ref|XP_002307736.1| predicted protein [Populus trichocarpa] gi|222857185|gb|EEE94732.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|449437192|ref|XP_004136376.1| PREDICTED: vacuolar protein sorting-associated protein 35B-like [Cucumis sativus] gi|449515522|ref|XP_004164798.1| PREDICTED: vacuolar protein sorting-associated protein 35B-like [Cucumis sativus] Back     alignment and taxonomy information
>gi|224061981|ref|XP_002300695.1| predicted protein [Populus trichocarpa] gi|222842421|gb|EEE79968.1| predicted protein [Populus trichocarpa] Back     alignment and taxonomy information
>gi|125546075|gb|EAY92214.1| hypothetical protein OsI_13933 [Oryza sativa Indica Group] Back     alignment and taxonomy information
>gi|297842331|ref|XP_002889047.1| hypothetical protein ARALYDRAFT_895460 [Arabidopsis lyrata subsp. lyrata] gi|297334888|gb|EFH65306.1| hypothetical protein ARALYDRAFT_895460 [Arabidopsis lyrata subsp. lyrata] Back     alignment and taxonomy information
>gi|356553365|ref|XP_003545027.1| PREDICTED: vacuolar protein sorting-associated protein 35-like [Glycine max] Back     alignment and taxonomy information
>gi|356564375|ref|XP_003550430.1| PREDICTED: vacuolar protein sorting-associated protein 35-like [Glycine max] Back     alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST ?

Original result of BLAST against Gene Ontology (AMIGO)

ID ? Alignment graph ? Length ? Definition ? Q cover ? H cover ? Identity ? E-value ?
Query779
TAIR|locus:2204390790 VPS35B "AT1G75850" [Arabidopsi 0.996 0.982 0.812 0.0
TAIR|locus:2827896787 VPS35A "AT2G17790" [Arabidopsi 0.996 0.986 0.708 2.8e-304
TAIR|locus:2080888790 VPS35C "AT3G51310" [Arabidopsi 0.987 0.973 0.668 2.7e-283
UNIPROTKB|F1NVF0796 VPS35 "Uncharacterized protein 0.982 0.961 0.437 1.2e-161
ZFIN|ZDB-GENE-030131-2042854 vps35 "vacuolar protein sortin 0.982 0.895 0.427 2.9e-158
MGI|MGI:1890467796 Vps35 "vacuolar protein sortin 0.982 0.961 0.432 9.9e-158
UNIPROTKB|Q2HJG5796 VPS35 "Vacuolar protein sortin 0.982 0.961 0.432 1.6e-157
UNIPROTKB|Q96QK1796 VPS35 "Vacuolar protein sortin 0.982 0.961 0.431 3.3e-157
UNIPROTKB|E2QRX1796 VPS35 "Uncharacterized protein 0.982 0.961 0.431 4.3e-157
RGD|1589784796 Vps35 "vacuolar protein sortin 0.982 0.961 0.430 4.3e-157
TAIR|locus:2204390 VPS35B "AT1G75850" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
 Score = 3284 (1161.1 bits), Expect = 0., P = 0.
 Identities = 640/788 (81%), Positives = 704/788 (89%)

Query:     3 LSGDEDEEKWLAEGIAGVQHNAFYMHRALDSNNLREALKYSAQMLSELRTSKLSPHKYYE 62
             L+G EDE+KWLAEGIAG+QHNAF+MHRALD+NNLRE LKYSA MLSELRTSKLSP KYY+
Sbjct:     4 LAGVEDEDKWLAEGIAGIQHNAFFMHRALDANNLREVLKYSALMLSELRTSKLSPQKYYD 63

Query:    63 LYMRAFDELRKLEMFFKDESRHGVSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKEAP 122
             LYMRAFD+LR+LE+FFKDESRHG+ ++DLYELVQHAGNILPR+YLLCTVGSVYIKSK+AP
Sbjct:    64 LYMRAFDQLRQLEIFFKDESRHGLPVVDLYELVQHAGNILPRMYLLCTVGSVYIKSKQAP 123

Query:   123 AKEVLKDLVEMCRGVQHPIRGLFLRSYLAQVSRDKLPDIGSEYERDAETVMDAVEFVLQN 182
             +K+VLKDLVEMCRGVQHPIRGLFLRSYLAQVSRDKLP+IGS+YE DA TVMDAVEFVLQN
Sbjct:   124 SKDVLKDLVEMCRGVQHPIRGLFLRSYLAQVSRDKLPEIGSDYEGDANTVMDAVEFVLQN 183

Query:   183 FTEMNKLWVRMQHQGPGXXXXXXXXXXXXXXDLVGKNLHVLSQIEGVDLEMYKENVLPRV 242
             FTEMNKLWVR+QHQGPG              DLVGKNLHVL QIEGVDLEMYKE VLPRV
Sbjct:   184 FTEMNKLWVRIQHQGPGTVREKQEKERNELRDLVGKNLHVLGQIEGVDLEMYKETVLPRV 243

Query:   243 LEQVVNCKDELAQYYLMDCIIQVFPDEYHLQTLETLLGACPQLQPTVDIKTVLSRLMDRL 302
             LEQVVNCKD+LAQYYLM+CIIQVFPDEYHLQTLETLL AC QL PTVD K VL++LMDRL
Sbjct:   244 LEQVVNCKDKLAQYYLMECIIQVFPDEYHLQTLETLLAACTQLMPTVDTKIVLTQLMDRL 303

Query:   303 SNYAVSSADVLPEFLQVEAFAKLSNAIGKVIDAQVDMPIVGAISLYVSLLTFTLRVHPDR 362
             SNYA SS DVL EFLQVEAFAKLSNAIGKVID Q++MPIVGA++L+VSLLTFTLRVHPDR
Sbjct:   304 SNYAASSPDVLHEFLQVEAFAKLSNAIGKVIDTQLEMPIVGAMTLFVSLLTFTLRVHPDR 363

Query:   363 LDYVDQVLGACVKKLSSAPKLEDSRATKQVVALLSAPLDKYNDIL-----------MDHL 411
             LDYVDQVLGACV KLSS PKLED+RA KQVVALLSAPL+KY+DI+           MDHL
Sbjct:   364 LDYVDQVLGACVVKLSSVPKLEDARAMKQVVALLSAPLEKYSDIVTALTLSNYPRVMDHL 423

Query:   412 DDGTNKVMAMVIIQSIMKNSTCISTAEKVEVLFELIKGLIKDLDGAAQDELDEEDFKEEQ 471
             DDGTNKVMAM+IIQSIMK  +CISTA+KVEVLFELIKGLIKDLD    +ELDEEDF+EEQ
Sbjct:   424 DDGTNKVMAMLIIQSIMKTDSCISTADKVEVLFELIKGLIKDLDETNAEELDEEDFQEEQ 483

Query:   472 NSVARLIHMLYNDDSEEMLKIICTVRKHIMTGGPKRLPFTVPPLVFSALRLVRQLQNQDG 531
             NSVARLIHML N++ EEMLKIIC VR+H+MTGGP+RLPFTVPPLVFSA+RLVRQL++Q G
Sbjct:   484 NSVARLIHMLDNEEPEEMLKIICVVRRHLMTGGPRRLPFTVPPLVFSAVRLVRQLESQGG 543

Query:   532 DVAGEEEPATPKKIFQLLNQTIETLLYVPSPEMALRLYLQCAEAANDCDLEPVAYEFFTQ 591
             D+AGE+  ATP+KIFQ+LNQTIE L  VP PE+ALRLYLQCAEAA+DCDLEPVAYEFFTQ
Sbjct:   544 DIAGEDS-ATPRKIFQILNQTIEVLTSVPCPELALRLYLQCAEAASDCDLEPVAYEFFTQ 602

Query:   592 AFMLYEEEIADSKAQVTAIHLIIGTLQRISVFGIENRDTLTHKATGYSARLLKKPDQCRA 651
             AFMLYEEEIADSKAQVTAIHLI+GTLQRI+VFG+ENRDTLTHKATGYSARLLKKPDQCRA
Sbjct:   603 AFMLYEEEIADSKAQVTAIHLIVGTLQRINVFGVENRDTLTHKATGYSARLLKKPDQCRA 662

Query:   652 VYACSHLFWVDDQDGIKDGERVLLCLKRALRIANAAQQMANVARGSSGPVVLFVEILNKY 711
             VYACSHLFWVDD DGIKDGERVLLCL+RALRIANAAQQMA+  RGSSGPV LFVEILNKY
Sbjct:   663 VYACSHLFWVDDPDGIKDGERVLLCLRRALRIANAAQQMASATRGSSGPVTLFVEILNKY 722

Query:   712 LYFFEKGNTQITASAIQSLIELITSEMQSESTTLDPADNAFFASTKRYIEFQKKKGGAMG 771
             +YFFEKGN  IT S IQSLIELI +EMQS++       + FF ST RYI+F K+KGG MG
Sbjct:   723 IYFFEKGNPHITPSDIQSLIELINNEMQSDNGNTTIHSDPFFTSTLRYIKFIKQKGGLMG 782

Query:   772 EKYDPINV 779
             EKYDPI +
Sbjct:   783 EKYDPIKL 790
GO:0006886 "intracellular protein transport" evidence=ISS
GO:0042147 "retrograde transport, endosome to Golgi" evidence=ISS
TAIR|locus:2827896 VPS35A "AT2G17790" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
TAIR|locus:2080888 VPS35C "AT3G51310" [Arabidopsis thaliana (taxid:3702)] Back     alignment and assigned GO terms
UNIPROTKB|F1NVF0 VPS35 "Uncharacterized protein" [Gallus gallus (taxid:9031)] Back     alignment and assigned GO terms
ZFIN|ZDB-GENE-030131-2042 vps35 "vacuolar protein sorting 35 (yeast)" [Danio rerio (taxid:7955)] Back     alignment and assigned GO terms
MGI|MGI:1890467 Vps35 "vacuolar protein sorting 35" [Mus musculus (taxid:10090)] Back     alignment and assigned GO terms
UNIPROTKB|Q2HJG5 VPS35 "Vacuolar protein sorting-associated protein 35" [Bos taurus (taxid:9913)] Back     alignment and assigned GO terms
UNIPROTKB|Q96QK1 VPS35 "Vacuolar protein sorting-associated protein 35" [Homo sapiens (taxid:9606)] Back     alignment and assigned GO terms
UNIPROTKB|E2QRX1 VPS35 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)] Back     alignment and assigned GO terms
RGD|1589784 Vps35 "vacuolar protein sorting 35 homolog (S. cerevisiae)" [Rattus norvegicus (taxid:10116)] Back     alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries ?

Original result of BLAST against SWISS-PROT

ID ?Name ?Annotated EC number ?Identity ?Query coverage ?Hit coverage ?RBH(Q2H) ?RBH(H2Q) ?
Q2HJG5VPS35_BOVINNo assigned EC number0.45120.97300.9522yesno
Q96QK1VPS35_HUMANNo assigned EC number0.450.97300.9522yesno
F4I0P8VP35B_ARATHNo assigned EC number0.82740.99610.9822yesno
Q9EQH3VPS35_MOUSENo assigned EC number0.45120.97300.9522yesno
Q54C24VPS35_DICDINo assigned EC number0.43110.95890.9564yesno
O74552VPS35_SCHPONo assigned EC number0.33530.92290.8600yesno
Q7X659VP35A_ARATHNo assigned EC number0.72150.99610.9860nono

EC Number Prediction by Ezypred Server ?

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software ?

No EC number assignment, probably not an enzyme!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING ?

Original result from the STRING server

Fail to connect to STRING server

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against CDD database part I

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query779
pfam03635741 pfam03635, Vps35, Vacuolar protein sorting-associa 0.0
>gnl|CDD|217651 pfam03635, Vps35, Vacuolar protein sorting-associated protein 35 Back     alignment and domain information 
 Score = 1090 bits (2821), Expect = 0.0
 Identities = 419/750 (55%), Positives = 524/750 (69%), Gaps = 31/750 (4%)

Query: 11  KWLAEGIAGVQHNAFYMHRALDSNNLREALKYSAQMLSELRTSKLSPHKYYELYMRAFDE 70
           K L E IA V+  +F M R LD   L +ALK+++ MLSELRTS LSP +YYELYM+ FDE
Sbjct: 1   KLLEEAIAVVKQQSFLMKRCLDQGKLMDALKHASNMLSELRTSSLSPKQYYELYMKVFDE 60

Query: 71  LRKLEMFFKDESRHGVSIIDLYELVQHAGNILPRLYLLCTVGSVYIKSKEAPAKEVLKDL 130
           L+ L  +  DE   G  + DLYELVQ+AGNI+PRLYLL TVGSVYIKSK+APAKE+LKD+
Sbjct: 61  LQYLSTYLVDEHPKGHHLADLYELVQYAGNIVPRLYLLITVGSVYIKSKDAPAKEILKDM 120

Query: 131 VEMCRGVQHPIRGLFLRSYLAQVSRDKLPDIGSEYERDAETVMDAVEFVLQNFTEMNKLW 190
           VEMCRGVQHP RGLFLR YL+Q ++DKLPD GS  E    TV D++EF+L NF EMNKLW
Sbjct: 121 VEMCRGVQHPTRGLFLRYYLSQRTKDKLPDTGSYEEGGGGTVQDSIEFLLTNFIEMNKLW 180

Query: 191 VRMQHQGPGRVREKREKERNELRDLVGKNLHVLSQIEGVDLEMYKENVLPRVLEQVVNCK 250
           VR+QHQGP R REKREKER ELR LVG NL  LSQ+EGVDLEMYKE +LPR+LEQVVNC+
Sbjct: 181 VRLQHQGPSREREKREKERKELRILVGSNLVRLSQLEGVDLEMYKETILPRILEQVVNCR 240

Query: 251 DELAQYYLMDCIIQVFPDEYHLQTLETLLGACPQLQPTVDIKTVLSRLMDRLSNYAVSSA 310
           D LAQ YL++ IIQVFPDE+HL TL+TLL AC QL P VD+K +L  LMDRL+ YA  S 
Sbjct: 241 DVLAQEYLLEVIIQVFPDEFHLATLDTLLSACLQLNPGVDVKKILITLMDRLAAYAERSN 300

Query: 311 DVLP------EFLQVEAFAKLSNAIGKVIDAQVDMPIVGAISLYVSLLTFTLRVHPDRLD 364
           + +       E   V+ F    N + K+I A+ D+P+   I+L VSLL  TL+ +PDRLD
Sbjct: 301 EGVAEVESTKEEEDVDLFEVFWNQLVKLIKARPDLPLQDIIALLVSLLNLTLKCYPDRLD 360

Query: 365 YVDQVLGACVKKLS--SAPKLEDSRATKQVVALLSAPLDKYNDI-----------LMDHL 411
           YVDQVLG  V+K+S     KL  S   +++V LL AP+  Y +I           L+  L
Sbjct: 361 YVDQVLGFAVEKVSNYLGAKLNSSEIEQEIVRLLLAPISTYKNILTALELPNYQPLLSSL 420

Query: 412 DDGTNKVMAMVIIQSIMKNSTCISTAEKVEVLFELIKGLIKDLDGAAQDELDEEDFKEEQ 471
           D  T K +A+ II +I+KN+T I+T + VE LFELI  LIKD      DEL+ E+F EEQ
Sbjct: 421 DYSTRKSVALAIIDNILKNNTLITTLDDVERLFELISPLIKDQPDQPSDELETEEFAEEQ 480

Query: 472 NSVARLIHMLYNDDSEEMLKIICTVRKHIMTGGPKRLPFTVPPLVFSALRLVRQLQNQDG 531
             VARLIH++ +DD E+  KI+ TVRKH+  GGP+R+ +T+P LVF+ALRL R+L++Q+ 
Sbjct: 481 EKVARLIHLIRSDDVEKQFKILNTVRKHLGKGGPERIRYTLPTLVFAALRLARRLKSQEK 540

Query: 532 DVAGEEEPATPKKIFQLLNQTIETLL-YVPSPEMALRLYLQCAEAANDCDLEPVAYEFFT 590
               ++  A  KKIF+ ++ TI  L    P+ E+AL+LYLQCA  A+ C LE +AYEFFT
Sbjct: 541 K--DDKWDAKIKKIFKFIHSTISILYNVAPAAELALKLYLQCAIVADQCGLEEIAYEFFT 598

Query: 591 QAFMLYEEEIADSKAQVTAIHLIIGTLQRISVFGIENRDTLTHKATGYSARLLKKPDQCR 650
           QAF +YEE I+DSKAQ  AI LII TLQR      EN +TL  K   Y+++LLKKPDQCR
Sbjct: 599 QAFTIYEESISDSKAQFQAIVLIISTLQRTRSLPEENYETLATKLALYASKLLKKPDQCR 658

Query: 651 AVYACSHLFWVDDQDGI--KDGERVLLCLKRALRIANAAQQMANVARGSSGPVVLFVEIL 708
           AVY CSHLFW  +  G   +DG+RVL CL++ALRIA++          +S  V LFVEIL
Sbjct: 659 AVYLCSHLFWATELSGEFYRDGKRVLECLQKALRIADSCMD-------NSQSVQLFVEIL 711

Query: 709 NKYLYFFEKGNTQITASAIQSLIELITSEM 738
           N+YLY+FEKGNT +T   I  LIELI   +
Sbjct: 712 NRYLYYFEKGNTHVTVKYINGLIELIQENL 741

Vacuolar protein sorting-associated protein (Vps) 35 is one of around 50 proteins involved in protein trafficking. In particular, Vps35 assembles into a retromer complex with at least four other proteins Vps5, Vps17, Vps26 and Vps29. Vps35 contains a central region of weaker sequence similarity, thought to indicate the presence of at least three domains. Length = 741

Conserved Domains Detected by HHsearch ?

Original result of HHsearch against CDD database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query 779
PF03635762 Vps35: Vacuolar protein sorting-associated protein 100.0
KOG1107760 consensus Membrane coat complex Retromer, subunit 100.0
KOG3682930 consensus Predicted membrane protein (associated w 99.91
KOG1107760 consensus Membrane coat complex Retromer, subunit 99.64
>PF03635 Vps35: Vacuolar protein sorting-associated protein 35 ; InterPro: IPR005378 The movement of lipid and protein components between intracellular organelles requires the regulated interactions of many molecules Back     alignment and domain information 
Probab=100.00  E-value=1.5e-242  Score=2109.27  Aligned_cols=720  Identities=57%  Similarity=0.906  Sum_probs=228.4

Q ss_pred             HHHHHHHHHHHHhHHHHHHhhchhcHHHHHHHHHHHHHhhhcCCCCCchhHHHHHHHHHhHHHHHHHHHhhhhCCCCchh
Q 036120           11 KWLAEGIAGVQHNAFYMHRALDSNNLREALKYSAQMLSELRTSKLSPHKYYELYMRAFDELRKLEMFFKDESRHGVSIID   90 (779)
Q Consensus        11 k~L~ea~~~Vk~qa~~Mkr~Ld~~~L~dALkhas~mL~ELRts~LsPK~YYeLYm~V~d~L~~L~~yl~d~~~~g~~l~d   90 (779)
                      |||+||+++||+||++||||||+++|||||||||+||+||||++||||+||||||+|||+|++|+.||.|+|++|++++|
T Consensus         1 k~L~ea~~~vk~qa~~Mkr~Ld~~~l~~aLk~as~mL~ELRt~~LsPk~YYeLYm~vfd~L~~L~~~l~~~~~~~~~l~d   80 (762)
T PF03635_consen    1 KLLEEALSVVKQQAFLMKRCLDNNKLMDALKHASNMLSELRTSSLSPKQYYELYMQVFDELRHLSSYLKDEHKKGRKLAD   80 (762)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CcHHHHHHHHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHhccCCCCchHHHHHHHHHHHhHHHHHHHHHHhccCCCcHHH
Confidence            79999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHHHhcchhHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHhhcccchhHHHHHHHHHHHhccccCCCCCCccccCCc
Q 036120           91 LYELVQHAGNILPRLYLLCTVGSVYIKSKEAPAKEVLKDLVEMCRGVQHPIRGLFLRSYLAQVSRDKLPDIGSEYERDAE  170 (779)
Q Consensus        91 LYE~VQyagnIlPRLYLmItVGs~yik~~~~p~~eILkDLvEMcRGVQhPiRGLFLR~YL~q~~k~~LPd~~s~~e~~~g  170 (779)
                      |||+||||||||||||||||||++||+++++|++||||||+|||||||||+|||||||||+|+|||+|||+++ +++++|
T Consensus        81 LYE~VQyagnIvPRLYLmitVG~~yi~~~~~~~~eilkDlvEMcrGVQhP~RGLFLR~YL~q~~k~~LP~~~~-~~~~~g  159 (762)
T PF03635_consen   81 LYELVQYAGNIVPRLYLMITVGSVYIKSKEAPAKEILKDLVEMCRGVQHPIRGLFLRYYLSQMTKDKLPDTGS-EEGNGG  159 (762)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HHHHHHhcCChhhhHHHHHHHHHHHHhCCcccHHHHHHHHHHHHhccccchhHHHHHHHHHHHhhhhCCCCCC-CCCCCC
Confidence            9999999999999999999999999999999999999999999999999999999999999999999999865 678999


Q ss_pred             ChhhhHHHHHHhHHHHHHHHHHHhhcCCCchhHhHHHHHHHHHHHhhhhhHHhhcccCCChHHHhhhhchHHHHHHHhcC
Q 036120          171 TVMDAVEFVLQNFTEMNKLWVRMQHQGPGRVREKREKERNELRDLVGKNLHVLSQIEGVDLEMYKENVLPRVLEQVVNCK  250 (779)
Q Consensus       171 ~~~dsi~Fll~NF~EMNKLWVRlQhqG~~rere~R~~ER~eL~iLVG~NLvrLSqLegv~~~~Y~~~iLP~iLeqIv~C~  250 (779)
                      ++.|||+||++||+||||||||||||||+|||+||++||+|||+||||||||||||||+|+++|++.|||+||||||+||
T Consensus       160 ~~~dsi~Fll~NF~EMNKLWVRlqhqg~srer~~R~~ER~eL~iLVG~NLvrLSqLeg~~~~~Y~~~iLP~ileqiv~c~  239 (762)
T PF03635_consen  160 DVNDSIDFLLTNFIEMNKLWVRLQHQGHSREREKREKERKELRILVGSNLVRLSQLEGVDLEMYKEKILPRILEQIVQCR  239 (762)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cHHHHHHHHHHHHHHHHHHHHHHhcccCchhHHHHHHHHHHHHHHHHHHHHHHHHccCCCHHHHHHHhhHHHHHHHHhcC
Confidence            99999999999999999999999999999999999999999999999999999999999999999999999999999999


Q ss_pred             CcchhhHhHhhhHhccCchhhHHhHHHHHhhccCCCCCCCHHHHHHHHHHHHhhhhhhccCCCcch-----------hch
Q 036120          251 DELAQYYLMDCIIQVFPDEYHLQTLETLLGACPQLQPTVDIKTVLSRLMDRLSNYAVSSADVLPEF-----------LQV  319 (779)
Q Consensus       251 D~iAQeYLmd~IIQvFPDEfHL~TL~~lL~a~~~L~~~V~i~~Il~~Li~RL~~y~~~~~~~~~~~-----------~~~  319 (779)
                      |++|||||||||||||||||||+||++||++|++|+|+||+++|+++|||||++|+.++++..++.           .++
T Consensus       240 D~lAQeYL~d~iIQvFPDefHL~TL~~lL~~~~~L~~~V~i~~il~~Li~RL~~y~~~~~~~~~~~~~~~~~~~~~~~~~  319 (762)
T PF03635_consen  240 DVLAQEYLMDVIIQVFPDEFHLQTLDELLSACLQLQPGVNIKEILISLIDRLANYAEREPESESEFESEKEEEEEIPEDV  319 (762)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cHHHHHHHHHHHHHHCCcHHHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHhccccccccchhhhhcccchhhh
Confidence            999999999999999999999999999999999999999999999999999999999887754321           279


Q ss_pred             HHHHHHHHHHHHHHhhCCCCchhhHHHHHHHHHHhhHHhcCCcchhHHHHHHHHHHHhccCC---CCCChHHHHHHHHHH
Q 036120          320 EAFAKLSNAIGKVIDAQVDMPIVGAISLYVSLLTFTLRVHPDRLDYVDQVLGACVKKLSSAP---KLEDSRATKQVVALL  396 (779)
Q Consensus       320 ~lF~~F~~~i~~l~~~~~~l~~~~~~~l~~sll~l~l~~yp~~~~~vd~il~~~~~~l~~~~---~~~~~~~~~~l~~LL  396 (779)
                      ++|++||+++.++++++|++|+++++++++||++|+++|||++++|||.+|++|++++++.+   ...++++.+.|++||
T Consensus       320 ~lF~~f~~~~~~l~~~~~~l~~~~~i~l~~sll~l~l~~yp~~~~~vd~vl~~~~~~l~~~~~~~~~~~~~~~~~L~~LL  399 (762)
T PF03635_consen  320 DLFEVFWDQLSKLIEARPDLPLEDIISLLVSLLNLSLKCYPDNLDYVDKVLKFCAEKLSNIGDSGKNHSSEAQKELVKLL  399 (762)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             hHHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhcccccccccHHHHHHHHHHH
Confidence            99999999999999999999999999999999999999999999999999999999998873   334557888999999


Q ss_pred             HcchhhhHHH-----------HHccCCcchhHHHHHHHHHHHHhcCccccCHHHHHHHHHHhHHHHhcCCCCcccc----
Q 036120          397 SAPLDKYNDI-----------LMDHLDDGTNKVMAMVIIQSIMKNSTCISTAEKVEVLFELIKGLIKDLDGAAQDE----  461 (779)
Q Consensus       397 ~~pl~~~~~~-----------ll~~l~~~~rk~va~~il~~~l~~~~~i~s~~~~~~ll~~~~~Li~~~~~~~~~~----  461 (779)
                      +.|+++|.+.           |++.||+++||+||..|+++++++++.|+|+++++.+|++++||++|+++.+.++    
T Consensus       400 ~~Pi~~~~~i~~vL~L~~y~~Ll~~L~~~~rk~IA~~Ii~~iL~~~~~Ist~e~v~~ll~li~pLi~d~~d~~~~~~~~~  479 (762)
T PF03635_consen  400 TLPIDSYFSILTVLSLENYPPLLSLLPYETRKQIALEIIDNILENNTIISTPEEVDNLLELISPLIKDQDDQPSSEPDLK  479 (762)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             HhHHhhcccHHHHHcCccHHHHHHhCChHHHHHHHHHHHHHHHhCCCccCCHHHHHHHHHHHHHHhhCCCCCCCcccccc
Confidence            9999887555           9999999999999999999999999999999999999999999999998877653    


Q ss_pred             CChhhHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhccCCccccccccHHHHHHHHHHHHhhhccCCC-------C
Q 036120          462 LDEEDFKEEQNSVARLIHMLYNDDSEEMLKIICTVRKHIMTGGPKRLPFTVPPLVFSALRLVRQLQNQDGDV-------A  534 (779)
Q Consensus       462 ~~~~~~~~eQ~~var~vhli~~~d~~~~~~il~~~r~~~~~gg~~ri~~t~P~Li~~~l~L~~~~~~~~~~~-------~  534 (779)
                      .++++|.+||++|||+||+++++||+.||++|..+|+||++||++|++||||||||++|||+|+++..+...       .
T Consensus       480 ~~~eef~eeQ~~varliHLi~~~D~d~~~~iL~~~rk~~~~Gg~~ri~~TlP~LIf~~lkL~r~~~~~~~~~~~~~~~~~  559 (762)
T PF03635_consen  480 EDSEEFAEEQELVARLIHLIRSDDPDQQFEILNIARKHFGNGGPKRIRYTLPPLIFAALKLARRIKDLKQKYPNNAIKDD  559 (762)
T ss_dssp             -----TCCCHHHHHHHHHHCTTSSHHHHHHHHHHHHHHHCTT-SSSHHHHCHHHHHHHHHHHHHHHCCC---------CT
T ss_pred             CchHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhCCCceeeeeHHHHHHHHHHHHHHHHHhhccchhhccccc
Confidence            478899999999999999999999999999999999999999999999999999999999999999764110       0


Q ss_pred             CCCCCCChhHHHHHHHHHHHHhhCCC-ChHHHHHHHHHHHHHhhhCCCchhHHHHHHHHHHhhhccccCcHHHHHHHHHH
Q 036120          535 GEEEPATPKKIFQLLNQTIETLLYVP-SPEMALRLYLQCAEAANDCDLEPVAYEFFTQAFMLYEEEIADSKAQVTAIHLI  613 (779)
Q Consensus       535 ~~~~~~~~k~if~fv~~~i~~L~~~~-~~~lalkL~Lq~A~~Ad~~~~~~iaYeFf~qAf~iyEe~isdS~~Q~~al~~i  613 (779)
                      .++...+++++|+|+|++|++|.+.. .|++++|||||||.+||+++++++|||||+|||+||||+|+|||+|++||.+|
T Consensus       560 ~~~~~~~~~kifkfi~~~i~~L~~~~~~~~lalkL~Lq~A~~AD~~~~e~iaYEFf~QAf~iYEE~IsDSk~Q~~aL~~i  639 (762)
T PF03635_consen  560 DEDWEKKCKKIFKFIHQCISALYQIHPSSELALKLYLQAAIVADQCGLEEIAYEFFSQAFTIYEEEISDSKAQFQALTLI  639 (762)
T ss_dssp             -TTHHHHHHHHHHHHHHHHHHHHHTT---HHHHHHHHHHHHHHHHH--TTHHHHHHHHHHHHHHHH--SHHHHHHHHHHH
T ss_pred             hhhHHHHHHHHHHHHHHHHHHHHhccCchhhhHHHHHHHHHHHHhhCcHHHHHHHHHHHHHHHHhhccchHHHHHHHHHH
Confidence            11111367899999999999997544 47999999999999999999999999999999999999999999999999999


Q ss_pred             HHHHHhhcCCCccchHHHHHHHHHHHHhccCchhhHHHHHHhhhhcCCCCC-----CCCcchhhHHHHHHHHHHHHHHHH
Q 036120          614 IGTLQRISVFGIENRDTLTHKATGYSARLLKKPDQCRAVYACSHLFWVDDQ-----DGIKDGERVLLCLKRALRIANAAQ  688 (779)
Q Consensus       614 i~tL~~~~~~~~e~y~~L~tk~t~~askLLKK~dQcrav~~cshLfw~~~~-----~~~~d~krVleCLqkslkiAd~~~  688 (779)
                      ||||+++|+|++||||+|+||||+||||||||||||||||+||||||+++.     ..+||||||+|||||||||||+||
T Consensus       640 i~tL~~~r~~~~Enyd~L~tk~t~yasKLLKK~DQCRaV~~CSHLfW~~~~~~~~~~~~rd~krVlECLQKaLriAds~m  719 (762)
T PF03635_consen  640 IGTLQKTRSFSEENYDTLITKCTLYASKLLKKPDQCRAVYLCSHLFWSTEISEETGSFYRDGKRVLECLQKALRIADSCM  719 (762)
T ss_dssp             HHHHCC-----HHHHHHHHHHHHHHHHC-SSHHHHHHHHHHCHHHHHT-B-TTTTT-B---HHHHHHHHHHHHHHHHCSS
T ss_pred             HHHHHHhcCCChhhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCCccccccccChHHHHHHHHHHHHHHHHHh
Confidence            999999999999999999999999999999999999999999999999853     469999999999999999999999


Q ss_pred             HHhhhccCCCCchhHHHHHHhhhhhhhccCCCcccHHHHHHHHHHHHhhh
Q 036120          689 QMANVARGSSGPVVLFVEILNKYLYFFEKGNTQITASAIQSLIELITSEM  738 (779)
Q Consensus       689 d~~~~~~~~~~~~~LfveILn~~lyf~~~~~~~it~~~in~LI~lI~~~l  738 (779)
                      |       +.++++|||||||+|+|||++||++||++||||||++|++|+
T Consensus       720 d-------~~~~~~LfveILn~ylyf~~~~~~~vt~~~in~LIelI~~~~  762 (762)
T PF03635_consen  720 D-------PSQSVQLFVEILNRYLYFFEKGNEEVTVKYINGLIELIKENL  762 (762)
T ss_dssp             S-------HHHHHHHHHHHHHHHHHHHTTT-TTS-HCHHHHHHHHHHCC-
T ss_pred             C-------cchhHHHHHHHHHHHHHhhhcCCCccCHHHHHHHHHHHhcCC
Confidence            9       999999999999999999999999999999999999999985

Vacuolar protein sorting-associated protein (Vps)5 is a yeast protein that is a subunit of a large multimeric complex, termed the retromer complex, involved in retrograde transport of proteins from endosomes to the trans-Golgi network. Sorting nexin (SNX) 1 and SNX2 are its mammalian orthologs []. To carry out its biological functions, Vps5 forms the retromer complex with at least four other proteins: Vps17, Vps26, Vps29, and Vps35.Vps35 contains a central region of weaker sequence similarity, thought to indicate the presence of at least three domains [].; PDB: 2R17_C.
>KOG1107 consensus Membrane coat complex Retromer, subunit VPS35 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information
>KOG3682 consensus Predicted membrane protein (associated with esophageal cancer in humans) [Function unknown] Back     alignment and domain information
>KOG1107 consensus Membrane coat complex Retromer, subunit VPS35 [Intracellular trafficking, secretion, and vesicular transport] Back     alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST ?

Original result of BLAST against Protein Data Bank

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query779
2r17_C298 Functional Architecture Of The Retromer Cargo-Recog 1e-55
>pdb|2R17|C Chain C, Functional Architecture Of The Retromer Cargo-Recognition Complex Length = 298 Back     alignment and structure 
Iteration: 1

 Score =  214 bits (546), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 129/301 (42%), Positives = 180/301 (59%), Gaps = 20/301 (6%)
Query: 466 DFKEEQNSVARLIHMLYNDDSEEMLKIICTVRKHIMTGGPKRLPFTVPPLVFSALRLV-R 524
           DF +EQ+ V R IH+L ++D ++   I+ T RKH   GG +R+ FT+PPLVF+A +L  R
Sbjct: 1   DFADEQSLVGRFIHLLRSEDPDQQYLILNTARKHFGAGGNQRIRFTLPPLVFAAYQLAFR 60
Query: 525 QLQNQDGDVAGEEEPATPKKIFQLLNQTIETLLYVPSPEMALRLYLQCAEAANDCDLE-- 582
             +N   D   E++    +KIF   +QTI  L+     E+ LRL+LQ A AA +   E  
Sbjct: 61  YKENSKVDDKWEKKC---QKIFSFAHQTISALIKAELAELPLRLFLQGALAAGEIGFENH 117
Query: 583 -PVAYEFFTQAFMLYEEEIADSKAQVTAIHLIIGTLQRISVFGIENRDTLTHKATGYSAR 641
             VAYEF +QAF LYE+EI+DSKAQ+ AI LIIGT +R   F  EN + L  +    +++
Sbjct: 118 ETVAYEFXSQAFSLYEDEISDSKAQLAAITLIIGTFERXKCFSEENHEPLRTQCALAASK 177
Query: 642 LLKKPDQCRAVYACSHLFWVD---DQDG--IKDGERVLLCLKRALRIANAAQQMANVARG 696
           LLKKPDQ RAV  C+HLFW     D++G  +  G+RV  CLK+AL+IAN           
Sbjct: 178 LLKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVXECLKKALKIANQCXD------- 230
Query: 697 SSGPVVLFVEILNKYLYFFEKGNTQITASAIQSLIELITSEMQS-ESTTLDPADNAFFAS 755
            S  V LF+EILN+Y+YF+EK N  +T   +  LI+ I  ++ + ES+      N  F +
Sbjct: 231 PSLQVQLFIEILNRYIYFYEKENDAVTIQVLNQLIQKIREDLPNLESSEETEQINKHFHN 290
Query: 756 T 756
           T
Sbjct: 291 T 291

Structure Templates Detected by RPS-BLAST ?

Original result of RPS-BLAST against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? E-value ?
Query779
2r17_C298 Vacuolar protein sorting-associated protein 35; pr 1e-114
1vt4_I 1221 APAF-1 related killer DARK; drosophila apoptosome, 9e-17
>2r17_C Vacuolar protein sorting-associated protein 35; protein transport, membrane, phosphorylation; 2.80A {Homo sapiens} Length = 298 Back     alignment and structure
 Score =  346 bits (889), Expect = e-114
 Identities = 123/307 (40%), Positives = 180/307 (58%), Gaps = 18/307 (5%)

Query: 466 DFKEEQNSVARLIHMLYNDDSEEMLKIICTVRKHIMTGGPKRLPFTVPPLVFSALRLVRQ 525
           DF +EQ+ V R IH+L ++D ++   I+ T RKH   GG +R+ FT+PPLVF+A +L  +
Sbjct: 1   DFADEQSLVGRFIHLLRSEDPDQQYLILNTARKHFGAGGNQRIRFTLPPLVFAAYQLAFR 60

Query: 526 LQNQDGDVAGEEEPATPKKIFQLLNQTIETLLYVPSPEMALRLYLQCAEAANDCDLE--- 582
            +        ++     +KIF   +QTI  L+     E+ LRL+LQ A AA +   E   
Sbjct: 61  YKENSKV--DDKWEKKCQKIFSFAHQTISALIKAELAELPLRLFLQGALAAGEIGFENHE 118

Query: 583 PVAYEFFTQAFMLYEEEIADSKAQVTAIHLIIGTLQRISVFGIENRDTLTHKATGYSARL 642
            VAYEF +QAF LYE+EI+DSKAQ+ AI LIIGT +R+  F  EN + L  +    +++L
Sbjct: 119 TVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKCFSEENHEPLRTQCALAASKL 178

Query: 643 LKKPDQCRAVYACSHLFWV-----DDQDGIKDGERVLLCLKRALRIANAAQQMANVARGS 697
           LKKPDQ RAV  C+HLFW       + + +  G+RV+ CLK+AL+IAN            
Sbjct: 179 LKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCMD-------P 231

Query: 698 SGPVVLFVEILNKYLYFFEKGNTQITASAIQSLIELITSEMQS-ESTTLDPADNAFFAST 756
           S  V LF+EILN+Y+YF+EK N  +T   +  LI+ I  ++ + ES+      N  F +T
Sbjct: 232 SLQVQLFIEILNRYIYFYEKENDAVTIQVLNQLIQKIREDLPNLESSEETEQINKHFHNT 291

Query: 757 KRYIEFQ 763
             ++  +
Sbjct: 292 LEHLRLR 298
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221 Back     alignment and structure

Structure Templates Detected by HHsearch ?

Original result of HHsearch against PDB70 database

ID ?Alignment Graph ?Length ? Definition ? Probability ?
Query779
2r17_C298 Vacuolar protein sorting-associated protein 35; pr 100.0
>2r17_C Vacuolar protein sorting-associated protein 35; protein transport, membrane, phosphorylation; 2.80A {Homo sapiens} Back     alignment and structure
Probab=100.00  E-value=5.7e-93  Score=754.81  Aligned_cols=289  Identities=42%  Similarity=0.687  Sum_probs=268.3

Q ss_pred             hHHHHHHHHHHHHHhhcCCCHHHHHHHHHHHHHHHhccCCccccccccHHHHHHHHHHHHhhhccCCCCCCCCCCChhHH
Q 036120          466 DFKEEQNSVARLIHMLYNDDSEEMLKIICTVRKHIMTGGPKRLPFTVPPLVFSALRLVRQLQNQDGDVAGEEEPATPKKI  545 (779)
Q Consensus       466 ~~~~eQ~~var~vhli~~~d~~~~~~il~~~r~~~~~gg~~ri~~t~P~Li~~~l~L~~~~~~~~~~~~~~~~~~~~k~i  545 (779)
                      ||.+||++|||+||+++++||+.||+||..+|+||++||++|++||+|||||++|+|+|+++..+..+..|+  ..++++
T Consensus         1 ef~eeQ~~varliHli~~~d~d~~f~il~~~rk~~~~gg~~Ri~~TlPpLvf~~l~L~r~~~~~~~~d~~~~--~~~~ki   78 (298)
T 2r17_C            1 DFADEQSLVGRFIHLLRSEDPDQQYLILNTARKHFGAGGNQRIRFTLPPLVFAAYQLAFRYKENSKVDDKWE--KKCQKI   78 (298)
T ss_dssp             CTTTTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHTTCSSSHHHHHHHHHHHHHHHHHHHHTTTTTCSSHH--HHHHHH
T ss_pred             CcHHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHhCCccceeecccHHHHHHHHHHHHHHhcccchhhHH--HHHHHH
Confidence            478999999999999999999999999999999999999999999999999999999999987643222222  346799


Q ss_pred             HHHHHHHHHHhhCCCChHHHHHHHHHHHHHhhhCCC---chhHHHHHHHHHHhhhccccCcHHHHHHHHHHHHHHHhhcC
Q 036120          546 FQLLNQTIETLLYVPSPEMALRLYLQCAEAANDCDL---EPVAYEFFTQAFMLYEEEIADSKAQVTAIHLIIGTLQRISV  622 (779)
Q Consensus       546 f~fv~~~i~~L~~~~~~~lalkL~Lq~A~~Ad~~~~---~~iaYeFf~qAf~iyEe~isdS~~Q~~al~~ii~tL~~~~~  622 (779)
                      |+|+|++|+.|+..+.|+++||||||||.+||++|+   +++|||||+|||+||||+|+|||+|++||.+|||||+++|+
T Consensus        79 f~fv~~~i~~L~~~~~~elalrL~Lq~A~~ad~~~~~~~e~iaYEFf~qAf~iYEe~IsdSk~Q~~al~~ii~tL~~~~~  158 (298)
T 2r17_C           79 FSFAHQTISALIKAELAELPLRLFLQGALAAGEIGFENHETVAYEFMSQAFSLYEDEISDSKAQLAAITLIIGTFERMKC  158 (298)
T ss_dssp             HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCCTTHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHTTCCC
T ss_pred             HHHHHHHHHHHhcccchHHHHHHHHHHHHHHHHhCccchhHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHccC
Confidence            999999999996557799999999999999999999   99999999999999999999999999999999999999999


Q ss_pred             CCccchHHHHHHHHHHHHhccCchhhHHHHHHhhhhcCCC-----CCCCCcchhhHHHHHHHHHHHHHHHHHHhhhccCC
Q 036120          623 FGIENRDTLTHKATGYSARLLKKPDQCRAVYACSHLFWVD-----DQDGIKDGERVLLCLKRALRIANAAQQMANVARGS  697 (779)
Q Consensus       623 ~~~e~y~~L~tk~t~~askLLKK~dQcrav~~cshLfw~~-----~~~~~~d~krVleCLqkslkiAd~~~d~~~~~~~~  697 (779)
                      |++||||+|+||||+||||||||||||||||+||||||++     +.+++||||||+|||||||||||+|||       +
T Consensus       159 f~~enye~L~tk~t~~askLLKK~dQcraV~~cshLfW~~~~~~~~~~~~rd~krVleCLqkaLkiA~~~~d-------~  231 (298)
T 2r17_C          159 FSEENHEPLRTQCALAASKLLKKPDQGRAVSTCAHLFWSGRNTDKNGEELHGGKRVMECLKKALKIANQCMD-------P  231 (298)
T ss_dssp             CCHHHHHHHHHHHHHHHHTCSSHHHHHHHHHHTHHHHHTCBCTTTTTCBCCCHHHHHHHHHHHHHHHHHSCC-------H
T ss_pred             CCHhhHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHhcCCCccccchhhccchHHHHHHHHHHHHHHHHHhC-------h
Confidence            9999999999999999999999999999999999999984     234689999999999999999999999       8


Q ss_pred             CCchhHHHHHHhhhhhhhccCCCcccHHHHHHHHHHHHhhhccCC-CCCchhHHHHHHHHHHHHHHH
Q 036120          698 SGPVVLFVEILNKYLYFFEKGNTQITASAIQSLIELITSEMQSES-TTLDPADNAFFASTKRYIEFQ  763 (779)
Q Consensus       698 ~~~~~LfveILn~~lyf~~~~~~~it~~~in~LI~lI~~~l~~~~-~~~~~~~~~~f~~T~~yI~~~  763 (779)
                      .++++|||||||+|+|||++||++||++||||||++|++|+.+++ +++.+++..||+||++||+.|
T Consensus       232 ~~~v~LfveILn~ylyff~~g~~~Vt~~~in~LI~lI~~~l~~~~~~~~~~~~~~~f~~tl~yI~~~  298 (298)
T 2r17_C          232 SLQVQLFIEILNRYIYFYEKENDAVTIQVLNQLIQKIREDLPNLESSEETEQINKHFHNTLEHLRLR  298 (298)
T ss_dssp             HHHHHHHHHHHHHHHHHHTTTCTTSCHHHHHHHHHHHHTTTTSSCCCHHHHHHHHHHHHHHHHTTCC
T ss_pred             hhHHHHHHHHHHHHHhhhhCCCCcccHHHHHHHHHHHHHHhhcccCccchHHHHHHHHHHHHHHhcC
Confidence            899999999999999999999999999999999999999997765 344588999999999999854

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST ?

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch ?

Original result of HHsearch against SCOP70(version1.75) database

No hit with probability above 80.00